Query 002761
Match_columns 883
No_of_seqs 701 out of 4330
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:34:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8.2E-69 1.8E-73 668.7 46.0 535 20-596 149-788 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.1E-64 4.6E-69 615.6 45.3 501 22-595 86-624 (697)
3 PLN03218 maturation of RBCL 1; 100.0 1.1E-60 2.3E-65 591.7 59.8 500 19-582 366-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.8E-59 3.9E-64 580.8 60.2 499 21-583 435-960 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 8.1E-58 1.7E-62 570.0 48.3 504 20-573 48-646 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-54 2.4E-59 530.2 45.7 420 20-499 120-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 2.1E-18 4.6E-23 214.1 56.3 469 21-545 395-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.6E-17 3.4E-22 206.3 59.4 415 79-548 373-800 (899)
9 PRK11788 tetratricopeptide rep 99.8 6.4E-17 1.4E-21 183.8 36.6 300 79-399 45-354 (389)
10 PRK11788 tetratricopeptide rep 99.8 2.7E-16 5.9E-21 178.7 33.3 311 30-368 42-366 (389)
11 PRK15174 Vi polysaccharide exp 99.6 4.4E-11 9.5E-16 145.4 46.4 328 28-393 47-382 (656)
12 KOG4422 Uncharacterized conser 99.6 1.2E-10 2.6E-15 126.6 41.5 321 11-349 105-462 (625)
13 PRK15174 Vi polysaccharide exp 99.6 3.2E-11 6.9E-16 146.6 41.8 327 76-451 49-378 (656)
14 TIGR00990 3a0801s09 mitochondr 99.5 6.2E-10 1.4E-14 134.8 47.1 367 26-451 130-568 (615)
15 KOG4422 Uncharacterized conser 99.5 2.8E-10 6.1E-15 123.8 37.1 389 76-498 122-554 (625)
16 PRK11447 cellulose synthase su 99.5 2.6E-09 5.7E-14 138.1 53.5 400 78-511 278-757 (1157)
17 PRK11447 cellulose synthase su 99.5 8.8E-10 1.9E-14 142.5 48.1 386 21-460 301-747 (1157)
18 TIGR00990 3a0801s09 mitochondr 99.5 2.1E-09 4.6E-14 130.2 46.6 364 78-494 136-570 (615)
19 PRK10049 pgaA outer membrane p 99.3 3.1E-08 6.8E-13 122.8 44.2 333 82-460 62-460 (765)
20 KOG4626 O-linked N-acetylgluco 99.3 2.3E-09 4.9E-14 121.2 27.6 346 21-393 114-486 (966)
21 KOG4626 O-linked N-acetylgluco 99.2 9E-09 2E-13 116.4 30.2 359 54-460 116-489 (966)
22 PRK10049 pgaA outer membrane p 99.2 1.7E-07 3.7E-12 116.4 45.0 340 22-400 48-461 (765)
23 PF13041 PPR_2: PPR repeat fam 99.2 2.4E-11 5.2E-16 96.7 6.5 50 206-255 1-50 (50)
24 PF13041 PPR_2: PPR repeat fam 99.2 3.3E-11 7.1E-16 95.9 6.9 50 102-151 1-50 (50)
25 PRK14574 hmsH outer membrane p 99.2 3E-07 6.6E-12 113.2 44.4 369 77-494 76-512 (822)
26 PRK09782 bacteriophage N4 rece 99.1 3.1E-07 6.6E-12 115.4 39.8 334 32-392 385-740 (987)
27 PRK14574 hmsH outer membrane p 99.1 1.7E-06 3.7E-11 106.7 42.9 343 33-392 44-479 (822)
28 KOG4318 Bicoid mRNA stability 99.1 3.6E-08 7.8E-13 115.8 26.0 261 90-401 11-273 (1088)
29 PRK10747 putative protoheme IX 99.1 2.9E-07 6.4E-12 105.6 33.7 284 80-391 95-389 (398)
30 KOG2002 TPR-containing nuclear 99.0 1.5E-05 3.3E-10 95.4 46.0 157 300-498 629-801 (1018)
31 PRK09782 bacteriophage N4 rece 99.0 4.4E-06 9.5E-11 105.1 42.4 361 28-460 318-710 (987)
32 PF13429 TPR_15: Tetratricopep 99.0 1.8E-09 3.8E-14 117.8 10.9 259 109-389 13-274 (280)
33 PF13429 TPR_15: Tetratricopep 99.0 2.8E-09 6.1E-14 116.2 11.4 253 79-347 18-275 (280)
34 PRK10747 putative protoheme IX 99.0 1.6E-06 3.5E-11 99.5 34.4 252 79-348 128-389 (398)
35 TIGR00540 hemY_coli hemY prote 98.9 2.2E-06 4.8E-11 98.8 34.4 292 79-391 94-398 (409)
36 KOG4318 Bicoid mRNA stability 98.9 2.1E-08 4.6E-13 117.6 16.5 245 43-332 14-283 (1088)
37 TIGR02521 type_IV_pilW type IV 98.9 1.8E-06 3.8E-11 89.1 27.4 200 104-311 31-231 (234)
38 TIGR02521 type_IV_pilW type IV 98.8 1.8E-06 3.9E-11 89.0 26.9 196 141-346 33-229 (234)
39 TIGR00540 hemY_coli hemY prote 98.8 5.8E-06 1.3E-10 95.3 33.6 259 79-347 128-397 (409)
40 PRK12370 invasion protein regu 98.7 4E-06 8.7E-11 100.4 29.2 249 83-348 275-534 (553)
41 COG3071 HemY Uncharacterized e 98.7 3.5E-05 7.6E-10 84.7 32.7 289 80-392 95-390 (400)
42 KOG2076 RNA polymerase III tra 98.7 0.00012 2.6E-09 87.5 37.1 325 79-451 150-509 (895)
43 KOG2076 RNA polymerase III tra 98.6 0.00041 9E-09 83.0 40.7 361 23-393 139-556 (895)
44 KOG1155 Anaphase-promoting com 98.6 4.5E-05 9.8E-10 85.0 29.4 248 119-391 242-494 (559)
45 PRK12370 invasion protein regu 98.6 6.1E-05 1.3E-09 90.3 31.8 265 102-393 254-536 (553)
46 COG2956 Predicted N-acetylgluc 98.6 5.6E-05 1.2E-09 81.0 27.4 294 81-398 47-353 (389)
47 KOG1126 DNA-binding cell divis 98.6 1.1E-05 2.3E-10 93.6 23.5 280 119-458 334-622 (638)
48 PF12854 PPR_1: PPR repeat 98.5 9.9E-08 2.1E-12 69.4 4.5 32 238-269 2-33 (34)
49 KOG2002 TPR-containing nuclear 98.5 0.0002 4.3E-09 86.2 34.3 338 94-457 442-801 (1018)
50 KOG0495 HAT repeat protein [RN 98.5 0.0049 1.1E-07 71.7 43.5 375 78-492 488-877 (913)
51 KOG1840 Kinesin light chain [C 98.5 5.7E-05 1.2E-09 88.0 27.5 241 104-347 199-477 (508)
52 COG3071 HemY Uncharacterized e 98.5 0.00036 7.9E-09 76.9 31.5 255 78-348 127-389 (400)
53 KOG1126 DNA-binding cell divis 98.4 4.5E-05 9.7E-10 88.5 25.2 281 83-393 333-621 (638)
54 PF12854 PPR_1: PPR repeat 98.4 2.1E-07 4.4E-12 67.8 4.0 34 202-235 1-34 (34)
55 COG2956 Predicted N-acetylgluc 98.4 0.00015 3.3E-09 77.8 26.5 183 82-270 82-276 (389)
56 KOG1915 Cell cycle control pro 98.4 0.004 8.6E-08 70.0 37.2 337 21-394 105-538 (677)
57 KOG1840 Kinesin light chain [C 98.4 0.00011 2.4E-09 85.7 26.0 242 139-390 199-477 (508)
58 KOG1155 Anaphase-promoting com 98.3 0.00071 1.5E-08 75.8 30.4 288 79-389 237-533 (559)
59 KOG2003 TPR repeat-containing 98.3 0.00019 4.1E-09 79.4 24.4 259 78-350 428-690 (840)
60 PRK11189 lipoprotein NlpI; Pro 98.3 0.00039 8.5E-09 76.6 26.7 227 116-356 38-272 (296)
61 PRK11189 lipoprotein NlpI; Pro 98.2 0.0011 2.4E-08 73.1 29.1 231 82-326 39-276 (296)
62 PF12569 NARP1: NMDA receptor- 98.2 0.0013 2.9E-08 77.5 31.0 259 113-394 13-293 (517)
63 KOG2047 mRNA splicing factor [ 98.2 0.016 3.5E-07 67.5 36.8 336 49-401 76-514 (835)
64 KOG0547 Translocase of outer m 98.2 0.011 2.3E-07 67.1 34.4 292 78-393 124-492 (606)
65 KOG2003 TPR repeat-containing 98.2 0.00047 1E-08 76.3 23.3 88 79-168 247-338 (840)
66 cd05804 StaR_like StaR_like; a 98.1 0.011 2.3E-07 66.4 34.6 261 78-348 52-335 (355)
67 KOG2047 mRNA splicing factor [ 98.1 0.046 1E-06 63.8 40.9 317 23-348 248-614 (835)
68 PF12569 NARP1: NMDA receptor- 98.1 0.0031 6.7E-08 74.4 29.6 290 79-391 14-333 (517)
69 KOG1156 N-terminal acetyltrans 98.0 0.062 1.3E-06 63.0 37.6 201 79-288 51-260 (700)
70 cd05804 StaR_like StaR_like; a 98.0 0.04 8.7E-07 61.8 36.4 303 81-393 18-337 (355)
71 KOG3617 WD40 and TPR repeat-co 98.0 0.0039 8.5E-08 73.7 28.0 363 22-448 725-1116(1416)
72 KOG1173 Anaphase-promoting com 97.9 0.0061 1.3E-07 70.1 27.9 286 101-416 241-534 (611)
73 KOG0495 HAT repeat protein [RN 97.9 0.089 1.9E-06 61.7 47.5 297 81-402 452-755 (913)
74 KOG1129 TPR repeat-containing 97.9 0.0009 1.9E-08 71.9 18.6 230 107-349 226-458 (478)
75 KOG1129 TPR repeat-containing 97.9 0.00067 1.4E-08 72.9 17.6 218 81-310 235-456 (478)
76 KOG3616 Selective LIM binding 97.9 0.0038 8.2E-08 72.8 24.7 195 144-388 737-933 (1636)
77 PF04733 Coatomer_E: Coatomer 97.8 0.00054 1.2E-08 75.2 17.2 149 148-311 111-264 (290)
78 TIGR00756 PPR pentatricopeptid 97.8 2.1E-05 4.6E-10 56.6 4.2 34 105-138 1-34 (35)
79 KOG1070 rRNA processing protei 97.8 0.0048 1E-07 77.0 25.9 213 161-395 1446-1666(1710)
80 TIGR00756 PPR pentatricopeptid 97.8 2.4E-05 5.2E-10 56.3 4.1 33 210-242 2-34 (35)
81 PF04733 Coatomer_E: Coatomer 97.8 0.001 2.2E-08 73.1 18.4 248 78-349 10-265 (290)
82 COG3063 PilF Tfp pilus assembl 97.8 0.0052 1.1E-07 63.7 21.6 187 78-270 44-234 (250)
83 KOG1173 Anaphase-promoting com 97.8 0.014 3.1E-07 67.1 26.8 258 78-348 253-517 (611)
84 KOG3616 Selective LIM binding 97.7 0.021 4.6E-07 66.9 27.8 137 216-389 740-876 (1636)
85 COG3063 PilF Tfp pilus assembl 97.7 0.023 5E-07 59.0 24.7 207 106-325 37-245 (250)
86 PF13812 PPR_3: Pentatricopept 97.7 6E-05 1.3E-09 54.2 4.2 33 105-137 2-34 (34)
87 KOG1915 Cell cycle control pro 97.6 0.2 4.4E-06 56.8 38.0 383 82-517 86-486 (677)
88 KOG3617 WD40 and TPR repeat-co 97.6 0.18 3.9E-06 60.4 33.2 229 79-347 738-994 (1416)
89 PF13812 PPR_3: Pentatricopept 97.6 8.5E-05 1.8E-09 53.4 4.1 33 209-241 2-34 (34)
90 PRK04841 transcriptional regul 97.6 0.11 2.4E-06 66.1 35.1 304 79-394 419-762 (903)
91 KOG3785 Uncharacterized conser 97.6 0.2 4.3E-06 54.9 37.7 405 78-556 66-541 (557)
92 KOG0547 Translocase of outer m 97.5 0.014 3E-07 66.1 21.9 222 79-310 336-564 (606)
93 KOG1070 rRNA processing protei 97.5 0.039 8.5E-07 69.3 27.5 230 101-341 1454-1692(1710)
94 TIGR03302 OM_YfiO outer membra 97.5 0.012 2.5E-07 62.2 20.1 184 103-311 32-231 (235)
95 PF01535 PPR: PPR repeat; Int 97.4 0.00014 3.1E-09 50.9 3.5 30 365-394 2-31 (31)
96 PF01535 PPR: PPR repeat; Int 97.4 0.00013 2.9E-09 51.1 3.1 29 210-238 2-30 (31)
97 KOG1174 Anaphase-promoting com 97.4 0.37 8E-06 54.0 33.5 272 100-392 190-467 (564)
98 KOG2376 Signal recognition par 97.4 0.49 1.1E-05 55.3 35.3 179 276-490 336-515 (652)
99 TIGR03302 OM_YfiO outer membra 97.4 0.021 4.5E-07 60.3 20.5 188 138-350 32-233 (235)
100 KOG1156 N-terminal acetyltrans 97.3 0.58 1.3E-05 55.2 35.0 323 81-456 121-470 (700)
101 KOG0985 Vesicle coat protein c 97.3 0.79 1.7E-05 56.4 38.9 130 220-386 1060-1189(1666)
102 PLN02789 farnesyltranstransfer 97.3 0.11 2.3E-06 58.0 26.4 215 108-333 41-268 (320)
103 PLN02789 farnesyltranstransfer 97.3 0.099 2.1E-06 58.3 26.0 211 148-376 46-268 (320)
104 PRK04841 transcriptional regul 97.3 0.13 2.8E-06 65.5 30.5 266 79-349 462-760 (903)
105 KOG4340 Uncharacterized conser 97.2 0.076 1.6E-06 56.9 21.5 92 107-201 13-106 (459)
106 KOG4340 Uncharacterized conser 97.2 0.043 9.4E-07 58.7 19.6 193 72-277 13-210 (459)
107 PF10037 MRP-S27: Mitochondria 97.2 0.0034 7.4E-08 71.8 12.6 123 134-256 61-186 (429)
108 KOG1128 Uncharacterized conser 97.1 0.034 7.4E-07 65.9 20.3 189 175-400 400-589 (777)
109 PF08579 RPM2: Mitochondrial r 97.1 0.0052 1.1E-07 56.9 10.8 80 176-255 28-116 (120)
110 PF06239 ECSIT: Evolutionarily 97.1 0.004 8.6E-08 64.2 11.2 95 50-154 43-153 (228)
111 KOG2376 Signal recognition par 97.1 0.93 2E-05 53.0 33.7 185 73-270 16-251 (652)
112 KOG1174 Anaphase-promoting com 97.1 0.73 1.6E-05 51.7 30.5 291 78-393 205-501 (564)
113 PF10037 MRP-S27: Mitochondria 97.1 0.0061 1.3E-07 69.8 13.8 117 175-293 68-186 (429)
114 PF08579 RPM2: Mitochondrial r 97.0 0.0066 1.4E-07 56.2 10.7 77 75-151 31-116 (120)
115 PRK15359 type III secretion sy 97.0 0.028 6.1E-07 55.0 16.0 102 107-211 27-128 (144)
116 PRK15179 Vi polysaccharide bio 96.8 0.1 2.2E-06 64.0 22.1 132 136-270 83-215 (694)
117 COG5010 TadD Flp pilus assembl 96.8 0.058 1.3E-06 57.0 17.1 124 106-231 102-225 (257)
118 PF06239 ECSIT: Evolutionarily 96.8 0.0086 1.9E-07 61.8 10.5 105 206-336 45-154 (228)
119 PRK15179 Vi polysaccharide bio 96.8 0.15 3.4E-06 62.5 23.2 147 170-328 82-230 (694)
120 PRK10370 formate-dependent nit 96.8 0.048 1E-06 56.5 16.3 118 83-202 53-173 (198)
121 TIGR02552 LcrH_SycD type III s 96.8 0.054 1.2E-06 51.6 15.3 96 105-201 18-113 (135)
122 COG4783 Putative Zn-dependent 96.7 0.31 6.6E-06 55.8 23.0 116 117-234 319-434 (484)
123 COG5010 TadD Flp pilus assembl 96.7 0.36 7.8E-06 51.2 22.1 158 108-270 70-229 (257)
124 KOG1128 Uncharacterized conser 96.7 0.031 6.7E-07 66.2 15.6 239 67-332 395-635 (777)
125 PF09295 ChAPs: ChAPs (Chs5p-A 96.7 0.043 9.4E-07 62.6 16.0 125 140-270 170-295 (395)
126 PRK10370 formate-dependent nit 96.7 0.17 3.6E-06 52.5 19.1 117 152-270 52-171 (198)
127 KOG3060 Uncharacterized conser 96.6 0.93 2E-05 48.1 24.0 188 118-311 26-219 (289)
128 PF09295 ChAPs: ChAPs (Chs5p-A 96.6 0.087 1.9E-06 60.2 17.9 122 178-311 174-296 (395)
129 KOG0985 Vesicle coat protein c 96.6 1 2.3E-05 55.4 27.0 160 104-294 1104-1263(1666)
130 PF04840 Vps16_C: Vps16, C-ter 96.6 0.4 8.7E-06 53.4 22.8 111 244-389 178-288 (319)
131 KOG3081 Vesicle coat complex C 96.6 0.16 3.4E-06 54.0 18.2 118 112-238 116-237 (299)
132 PF09976 TPR_21: Tetratricopep 96.5 0.094 2E-06 51.2 15.1 114 152-267 24-142 (145)
133 TIGR02552 LcrH_SycD type III s 96.5 0.1 2.2E-06 49.8 15.1 93 176-270 20-112 (135)
134 KOG1125 TPR repeat-containing 96.5 0.19 4.1E-06 58.5 19.3 256 114-385 295-564 (579)
135 PRK14720 transcript cleavage f 96.5 0.32 6.9E-06 60.7 22.7 220 103-350 30-253 (906)
136 KOG1914 mRNA cleavage and poly 96.4 2.8 6.2E-05 48.7 33.7 153 224-392 347-501 (656)
137 PF09976 TPR_21: Tetratricopep 96.4 0.15 3.2E-06 49.8 15.8 124 106-233 14-143 (145)
138 PRK14720 transcript cleavage f 96.4 1.1 2.4E-05 56.1 26.5 234 20-291 28-268 (906)
139 COG4783 Putative Zn-dependent 96.4 0.8 1.7E-05 52.6 23.2 216 79-310 212-435 (484)
140 KOG3081 Vesicle coat complex C 96.3 1.1 2.4E-05 47.8 22.5 251 113-392 17-271 (299)
141 PRK15359 type III secretion sy 96.3 0.1 2.2E-06 51.1 14.3 92 144-236 29-120 (144)
142 cd00189 TPR Tetratricopeptide 96.3 0.063 1.4E-06 45.6 11.4 89 110-199 6-94 (100)
143 KOG1125 TPR repeat-containing 96.2 0.57 1.2E-05 54.6 21.4 253 78-344 294-566 (579)
144 cd00189 TPR Tetratricopeptide 96.2 0.075 1.6E-06 45.0 11.2 89 179-269 6-94 (100)
145 KOG2053 Mitochondrial inherita 96.1 1.8 4E-05 52.9 25.6 221 151-393 21-256 (932)
146 PF05843 Suf: Suppressor of fo 95.9 0.1 2.2E-06 57.2 13.3 25 245-269 109-133 (280)
147 PF05843 Suf: Suppressor of fo 95.8 0.21 4.6E-06 54.6 15.0 144 105-253 2-150 (280)
148 KOG0624 dsRNA-activated protei 95.6 4.8 0.0001 44.5 30.9 162 215-393 162-337 (504)
149 PRK02603 photosystem I assembl 95.5 0.5 1.1E-05 47.5 15.4 91 104-194 35-127 (172)
150 KOG2053 Mitochondrial inherita 95.4 8.3 0.00018 47.5 27.2 187 79-270 53-253 (932)
151 TIGR02795 tol_pal_ybgF tol-pal 95.4 0.39 8.5E-06 44.1 13.4 21 111-131 9-29 (119)
152 KOG1914 mRNA cleavage and poly 95.3 1.4 3.1E-05 51.0 19.5 181 86-270 310-499 (656)
153 PLN03088 SGT1, suppressor of 95.3 0.29 6.4E-06 55.4 14.3 85 116-201 14-98 (356)
154 PRK10866 outer membrane biogen 95.2 4.6 9.9E-05 43.3 22.6 178 149-347 42-239 (243)
155 TIGR02795 tol_pal_ybgF tol-pal 95.2 0.42 9.2E-06 43.8 13.0 98 248-348 7-104 (119)
156 PF14938 SNAP: Soluble NSF att 95.1 2.6 5.6E-05 46.1 20.7 134 175-310 116-264 (282)
157 PRK02603 photosystem I assembl 95.1 0.81 1.7E-05 46.0 15.5 82 176-258 38-121 (172)
158 CHL00033 ycf3 photosystem I as 95.0 0.55 1.2E-05 46.9 14.1 94 104-197 35-137 (168)
159 KOG3060 Uncharacterized conser 94.9 5.5 0.00012 42.5 20.9 189 188-393 27-221 (289)
160 KOG1538 Uncharacterized conser 94.9 4.6 0.0001 47.8 22.1 99 26-129 559-657 (1081)
161 PF12895 Apc3: Anaphase-promot 94.8 0.073 1.6E-06 46.7 6.2 19 146-164 32-50 (84)
162 PF12688 TPR_5: Tetratrico pep 94.6 1.2 2.6E-05 42.4 14.3 86 114-199 11-101 (120)
163 KOG0624 dsRNA-activated protei 94.3 11 0.00023 41.9 26.7 192 146-350 162-371 (504)
164 PLN03088 SGT1, suppressor of 94.3 1.3 2.8E-05 50.3 16.2 92 77-170 10-101 (356)
165 CHL00033 ycf3 photosystem I as 94.2 1.5 3.3E-05 43.7 15.0 91 175-266 37-136 (168)
166 KOG1127 TPR repeat-containing 94.2 7.6 0.00017 48.4 22.7 180 154-347 473-657 (1238)
167 KOG2280 Vacuolar assembly/sort 94.2 13 0.00028 45.1 24.1 251 102-389 505-796 (829)
168 KOG3941 Intermediate in Toll s 93.9 0.3 6.6E-06 52.2 9.2 89 81-188 84-173 (406)
169 PF14559 TPR_19: Tetratricopep 93.8 0.26 5.6E-06 41.0 7.2 51 151-201 3-53 (68)
170 PRK10153 DNA-binding transcrip 93.8 3.5 7.6E-05 49.2 19.2 145 133-283 331-489 (517)
171 KOG1538 Uncharacterized conser 93.7 5.6 0.00012 47.1 19.5 55 319-390 746-800 (1081)
172 PF12895 Apc3: Anaphase-promot 93.7 0.16 3.6E-06 44.4 6.0 77 153-232 3-82 (84)
173 KOG1127 TPR repeat-containing 93.5 18 0.00039 45.3 24.2 285 79-393 572-880 (1238)
174 KOG3785 Uncharacterized conser 93.5 15 0.00032 40.9 32.7 295 117-463 164-497 (557)
175 KOG0548 Molecular co-chaperone 93.4 20 0.00043 42.0 28.0 102 79-183 12-114 (539)
176 PF12921 ATP13: Mitochondrial 93.4 0.65 1.4E-05 44.5 10.1 79 209-288 3-96 (126)
177 KOG0548 Molecular co-chaperone 93.3 21 0.00046 41.8 25.2 101 113-218 11-114 (539)
178 PRK10153 DNA-binding transcrip 93.0 4.9 0.00011 48.0 18.8 136 99-238 332-483 (517)
179 PF03704 BTAD: Bacterial trans 92.8 0.88 1.9E-05 44.2 10.3 58 107-165 65-122 (146)
180 KOG3941 Intermediate in Toll s 92.7 1.1 2.5E-05 47.9 11.3 106 205-336 64-174 (406)
181 PF12688 TPR_5: Tetratrico pep 92.7 2.9 6.2E-05 39.7 13.2 86 148-235 10-102 (120)
182 KOG2796 Uncharacterized conser 92.6 13 0.00028 39.9 18.7 275 23-321 69-359 (366)
183 KOG4162 Predicted calmodulin-b 92.6 31 0.00068 42.1 42.5 261 80-348 238-541 (799)
184 PF14559 TPR_19: Tetratricopep 92.3 0.46 1E-05 39.4 6.6 51 81-132 3-53 (68)
185 PF14938 SNAP: Soluble NSF att 92.3 20 0.00043 39.1 25.2 150 106-270 96-264 (282)
186 PF12921 ATP13: Mitochondrial 92.1 1.3 2.8E-05 42.5 10.1 50 204-253 48-98 (126)
187 KOG0553 TPR repeat-containing 92.1 1.6 3.5E-05 47.4 11.7 98 114-215 91-189 (304)
188 PF13525 YfiO: Outer membrane 91.9 9 0.0002 39.7 17.0 172 149-340 15-198 (203)
189 KOG4162 Predicted calmodulin-b 91.7 39 0.00085 41.3 34.6 341 22-392 356-783 (799)
190 KOG2796 Uncharacterized conser 91.6 3.3 7.1E-05 44.2 12.9 143 175-327 179-326 (366)
191 PF13432 TPR_16: Tetratricopep 91.3 0.9 2E-05 37.4 7.2 50 150-199 8-57 (65)
192 PRK15363 pathogenicity island 91.3 5.4 0.00012 39.7 13.6 87 113-201 44-131 (157)
193 PRK10866 outer membrane biogen 91.1 24 0.00053 37.7 22.5 167 111-297 39-229 (243)
194 PF03704 BTAD: Bacterial trans 91.1 1.3 2.7E-05 43.1 9.2 58 176-234 65-122 (146)
195 PF13170 DUF4003: Protein of u 91.0 29 0.00062 38.4 20.6 132 189-326 78-223 (297)
196 PF04840 Vps16_C: Vps16, C-ter 90.8 31 0.00068 38.5 31.4 112 209-347 178-289 (319)
197 PRK15363 pathogenicity island 90.3 4.8 0.0001 40.0 12.2 85 150-235 46-130 (157)
198 PF13414 TPR_11: TPR repeat; P 89.9 1.9 4.2E-05 35.8 8.1 60 140-199 4-64 (69)
199 COG5107 RNA14 Pre-mRNA 3'-end 89.8 6.4 0.00014 44.9 14.0 130 208-349 397-531 (660)
200 COG5107 RNA14 Pre-mRNA 3'-end 89.8 8.1 0.00018 44.2 14.8 148 139-294 397-549 (660)
201 PF13432 TPR_16: Tetratricopep 89.8 1.5 3.4E-05 36.0 7.4 56 180-237 4-60 (65)
202 smart00299 CLH Clathrin heavy 89.7 12 0.00027 35.8 14.8 82 145-234 13-95 (140)
203 PF13525 YfiO: Outer membrane 88.7 28 0.00061 35.9 17.5 181 181-383 13-198 (203)
204 PF13424 TPR_12: Tetratricopep 88.6 1.4 3E-05 37.7 6.4 59 175-233 7-71 (78)
205 PRK10803 tol-pal system protei 88.1 5.9 0.00013 43.0 12.3 96 142-237 146-246 (263)
206 smart00299 CLH Clathrin heavy 88.0 24 0.00052 33.8 15.5 119 79-219 17-136 (140)
207 PF13414 TPR_11: TPR repeat; P 88.0 2.5 5.3E-05 35.1 7.5 65 103-168 2-67 (69)
208 PLN03098 LPA1 LOW PSII ACCUMUL 87.8 12 0.00027 43.2 15.0 66 277-349 72-141 (453)
209 PF13170 DUF4003: Protein of u 87.7 28 0.00062 38.4 17.4 154 20-186 57-229 (297)
210 PF07035 Mic1: Colon cancer-as 87.2 28 0.00062 35.0 15.5 136 89-238 14-150 (167)
211 PRK10803 tol-pal system protei 87.1 9.5 0.00021 41.4 13.1 95 175-271 145-245 (263)
212 PF04053 Coatomer_WDAD: Coatom 86.1 29 0.00062 40.7 17.2 58 319-393 346-403 (443)
213 PF08631 SPO22: Meiosis protei 85.7 58 0.0013 35.4 24.0 166 175-347 86-273 (278)
214 PLN03098 LPA1 LOW PSII ACCUMUL 85.2 11 0.00023 43.7 12.7 64 103-168 74-141 (453)
215 PF13424 TPR_12: Tetratricopep 85.0 2.9 6.4E-05 35.6 6.5 60 141-200 7-73 (78)
216 PF13371 TPR_9: Tetratricopept 84.8 5.5 0.00012 33.3 8.1 21 179-199 35-55 (73)
217 PF04053 Coatomer_WDAD: Coatom 84.0 34 0.00075 40.0 16.6 28 243-270 347-374 (443)
218 COG4235 Cytochrome c biogenesi 83.9 39 0.00085 37.0 15.7 98 138-237 155-256 (287)
219 KOG0553 TPR repeat-containing 83.4 9.1 0.0002 41.8 10.5 95 184-286 92-188 (304)
220 PF08631 SPO22: Meiosis protei 82.9 77 0.0017 34.5 25.4 223 80-308 4-271 (278)
221 PF13371 TPR_9: Tetratricopept 82.6 5.4 0.00012 33.4 7.1 57 113-170 4-60 (73)
222 PF10602 RPN7: 26S proteasome 81.9 38 0.00083 34.4 14.1 94 175-270 38-140 (177)
223 PF14432 DYW_deaminase: DYW fa 81.8 0.42 9.1E-06 45.1 -0.1 47 531-593 2-48 (116)
224 PHA02875 ankyrin repeat protei 81.3 21 0.00046 41.0 13.7 211 76-321 6-231 (413)
225 PRK10635 bacterioferritin; Pro 80.7 1.7 3.6E-05 43.4 3.6 81 745-842 30-114 (158)
226 PF10300 DUF3808: Protein of u 79.5 1.2E+02 0.0026 35.8 19.3 19 252-270 314-332 (468)
227 COG4700 Uncharacterized protei 79.3 80 0.0017 32.5 18.8 124 136-263 86-213 (251)
228 PF04184 ST7: ST7 protein; In 79.1 51 0.0011 38.7 15.0 57 179-235 265-322 (539)
229 COG0457 NrfG FOG: TPR repeat [ 78.5 66 0.0014 31.0 27.0 219 84-311 38-264 (291)
230 KOG1130 Predicted G-alpha GTPa 77.7 46 0.00099 38.0 13.7 263 75-348 23-343 (639)
231 PF04931 DNA_pol_phi: DNA poly 77.7 1.3 2.9E-05 55.5 2.4 13 246-258 287-299 (784)
232 KOG1585 Protein required for f 77.4 1.1E+02 0.0023 32.9 15.6 42 86-129 75-116 (308)
233 COG3629 DnrI DNA-binding trans 76.5 21 0.00046 38.9 10.7 77 175-252 155-236 (280)
234 PF06524 NOA36: NOA36 protein; 75.5 1.1 2.4E-05 47.0 0.7 9 504-512 179-187 (314)
235 COG4235 Cytochrome c biogenesi 74.4 48 0.001 36.3 12.7 103 241-350 154-257 (287)
236 PF04097 Nic96: Nup93/Nic96; 74.0 2.2E+02 0.0048 34.9 20.7 90 215-311 265-355 (613)
237 PF10446 DUF2457: Protein of u 73.8 0.86 1.9E-05 51.6 -0.7 16 711-726 186-201 (458)
238 KOG0943 Predicted ubiquitin-pr 73.7 1.6 3.5E-05 54.3 1.4 11 847-857 1949-1959(3015)
239 COG0457 NrfG FOG: TPR repeat [ 73.0 92 0.002 30.0 30.9 222 117-349 36-265 (291)
240 PF07035 Mic1: Colon cancer-as 72.8 1.1E+02 0.0024 30.9 16.7 101 229-346 15-115 (167)
241 PF10300 DUF3808: Protein of u 72.4 2.1E+02 0.0045 33.8 20.6 180 157-348 175-375 (468)
242 PRK15331 chaperone protein Sic 72.1 40 0.00087 33.8 10.6 86 80-167 48-133 (165)
243 COG5406 Nucleosome binding fac 71.8 5.2 0.00011 47.1 4.8 113 557-682 872-996 (1001)
244 COG3629 DnrI DNA-binding trans 71.2 50 0.0011 36.1 12.0 94 54-148 137-236 (280)
245 COG1729 Uncharacterized protei 70.1 61 0.0013 35.1 12.1 96 141-237 144-244 (262)
246 PHA02875 ankyrin repeat protei 70.1 30 0.00065 39.7 10.9 209 30-280 6-230 (413)
247 KOG4570 Uncharacterized conser 69.6 38 0.00082 37.3 10.4 50 188-237 115-164 (418)
248 KOG0543 FKBP-type peptidyl-pro 68.6 61 0.0013 37.0 12.2 94 141-236 259-354 (397)
249 PF09205 DUF1955: Domain of un 68.0 1.2E+02 0.0027 29.5 13.0 139 81-240 14-152 (161)
250 COG4700 Uncharacterized protei 67.7 1.6E+02 0.0034 30.5 18.5 129 205-342 86-215 (251)
251 KOG4555 TPR repeat-containing 67.4 1.2E+02 0.0025 29.6 11.9 92 77-170 51-146 (175)
252 PF10602 RPN7: 26S proteasome 66.9 72 0.0016 32.4 11.6 57 142-198 39-98 (177)
253 KOG2114 Vacuolar assembly/sort 66.3 1.6E+02 0.0034 36.8 15.6 177 72-270 337-517 (933)
254 PF09205 DUF1955: Domain of un 64.9 1.4E+02 0.0031 29.1 14.4 61 209-270 87-147 (161)
255 KOG1920 IkappaB kinase complex 64.8 4.3E+02 0.0093 34.5 31.7 116 240-390 932-1053(1265)
256 KOG3130 Uncharacterized conser 64.3 8.7 0.00019 42.9 4.5 40 595-640 240-279 (514)
257 PF13762 MNE1: Mitochondrial s 63.3 1.6E+02 0.0034 29.0 13.0 115 20-152 11-128 (145)
258 PF13428 TPR_14: Tetratricopep 63.3 15 0.00032 27.8 4.5 34 364-400 2-35 (44)
259 PF13176 TPR_7: Tetratricopept 63.0 14 0.00031 26.7 4.1 26 365-390 1-26 (36)
260 PRK15331 chaperone protein Sic 63.0 55 0.0012 32.9 9.5 86 115-201 48-133 (165)
261 COG1729 Uncharacterized protei 62.7 93 0.002 33.7 11.8 100 245-351 144-246 (262)
262 PF04184 ST7: ST7 protein; In 59.8 3.6E+02 0.0078 32.0 17.3 61 284-348 263-323 (539)
263 PF13512 TPR_18: Tetratricopep 59.6 69 0.0015 31.4 9.3 51 151-201 22-75 (142)
264 PF09613 HrpB1_HrpK: Bacterial 59.3 1.7E+02 0.0038 29.2 12.2 17 184-200 55-71 (160)
265 PF04097 Nic96: Nup93/Nic96; 59.0 1.9E+02 0.0041 35.5 15.2 42 26-67 114-158 (613)
266 PF13929 mRNA_stabil: mRNA sta 58.7 2.8E+02 0.0062 30.5 15.4 144 107-253 134-288 (292)
267 KOG3241 Uncharacterized conser 58.5 5.8 0.00013 39.4 1.7 20 606-625 129-148 (227)
268 PF11838 ERAP1_C: ERAP1-like C 57.6 2.9E+02 0.0063 30.2 19.8 79 189-270 146-228 (324)
269 PF13281 DUF4071: Domain of un 56.8 3.5E+02 0.0077 31.0 20.6 32 318-349 303-334 (374)
270 KOG2610 Uncharacterized conser 56.6 3.3E+02 0.0072 30.6 19.0 151 116-268 115-272 (491)
271 COG4105 ComL DNA uptake lipopr 56.5 2.9E+02 0.0062 29.8 20.2 57 286-348 173-232 (254)
272 KOG4570 Uncharacterized conser 56.4 87 0.0019 34.7 10.2 100 169-270 59-162 (418)
273 KOG2041 WD40 repeat protein [G 56.2 4.7E+02 0.01 32.2 27.7 56 206-270 850-905 (1189)
274 KOG4555 TPR repeat-containing 56.2 2E+02 0.0044 28.0 12.1 90 113-203 52-145 (175)
275 PF13176 TPR_7: Tetratricopept 55.5 25 0.00054 25.4 4.3 25 106-130 1-25 (36)
276 KOG0543 FKBP-type peptidyl-pro 54.5 1.9E+02 0.0041 33.1 12.9 121 147-270 216-353 (397)
277 COG3118 Thioredoxin domain-con 53.2 3.5E+02 0.0076 29.9 15.6 51 79-130 144-194 (304)
278 PRK11906 transcriptional regul 52.6 4.5E+02 0.0097 30.9 16.6 61 138-198 337-397 (458)
279 PHA03100 ankyrin repeat protei 52.5 1.8E+02 0.0039 33.9 13.4 214 28-267 37-271 (480)
280 KOG0276 Vesicle coat complex C 52.2 87 0.0019 37.5 10.0 149 186-389 599-747 (794)
281 PF13762 MNE1: Mitochondrial s 52.1 1.7E+02 0.0036 28.9 10.6 79 143-221 43-128 (145)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 52.0 72 0.0016 29.2 7.3 45 122-166 25-69 (103)
283 PF00637 Clathrin: Region in C 51.5 5.3 0.00011 38.5 0.2 13 209-221 43-55 (143)
284 KOG1550 Extracellular protein 50.8 4E+02 0.0086 32.2 16.0 116 85-204 228-359 (552)
285 KOG2297 Predicted translation 49.6 4.1E+02 0.0088 29.6 19.1 217 21-263 109-341 (412)
286 PRK11906 transcriptional regul 49.4 4.9E+02 0.011 30.5 15.5 161 105-268 252-432 (458)
287 PF04931 DNA_pol_phi: DNA poly 49.2 6.1 0.00013 49.8 0.3 10 591-600 624-633 (784)
288 PF13428 TPR_14: Tetratricopep 49.0 54 0.0012 24.7 5.5 21 180-200 8-28 (44)
289 PF02284 COX5A: Cytochrome c o 48.9 68 0.0015 29.6 6.8 59 122-181 28-87 (108)
290 KOG2041 WD40 repeat protein [G 47.3 6.4E+02 0.014 31.2 22.6 258 84-392 678-952 (1189)
291 KOG1189 Global transcriptional 46.9 11 0.00023 45.6 1.8 17 663-679 927-943 (960)
292 COG4105 ComL DNA uptake lipopr 46.9 4E+02 0.0088 28.7 21.0 188 175-392 37-233 (254)
293 PF13374 TPR_10: Tetratricopep 46.1 44 0.00096 24.1 4.6 25 210-234 4-28 (42)
294 KOG2114 Vacuolar assembly/sort 45.3 7.4E+02 0.016 31.3 17.6 179 141-347 336-517 (933)
295 KOG0276 Vesicle coat complex C 45.0 1.1E+02 0.0025 36.6 9.5 133 106-270 616-748 (794)
296 PF13281 DUF4071: Domain of un 44.7 5.4E+02 0.012 29.5 20.4 32 277-311 302-333 (374)
297 PF13374 TPR_10: Tetratricopep 44.2 51 0.0011 23.7 4.7 27 105-131 3-29 (42)
298 cd00923 Cyt_c_Oxidase_Va Cytoc 43.7 94 0.002 28.5 6.8 47 224-270 23-69 (103)
299 KOG2406 MADS box transcription 43.6 1.6E+02 0.0035 34.5 10.2 52 365-417 232-284 (635)
300 KOG0550 Molecular chaperone (D 42.4 6E+02 0.013 29.5 17.8 119 148-270 178-314 (486)
301 PF00637 Clathrin: Region in C 42.3 5.7 0.00012 38.3 -1.2 82 145-233 13-95 (143)
302 KOG1550 Extracellular protein 42.1 5.6E+02 0.012 30.9 15.5 155 79-239 259-428 (552)
303 PF13934 ELYS: Nuclear pore co 41.8 4.5E+02 0.0097 27.8 14.0 25 15-40 19-43 (226)
304 PF02284 COX5A: Cytochrome c o 41.7 1E+02 0.0022 28.5 6.8 45 226-270 28-72 (108)
305 PHA02876 ankyrin repeat protei 41.7 6.4E+02 0.014 31.1 16.4 110 233-361 360-477 (682)
306 PF11848 DUF3368: Domain of un 40.3 59 0.0013 25.5 4.5 39 471-513 7-45 (48)
307 PHA02989 ankyrin repeat protei 40.3 2.2E+02 0.0047 33.7 11.6 193 36-254 13-226 (494)
308 COG1747 Uncharacterized N-term 40.3 7.1E+02 0.015 29.7 20.9 162 175-349 68-234 (711)
309 KOG1189 Global transcriptional 40.1 13 0.00027 45.1 1.0 21 716-737 929-949 (960)
310 COG3118 Thioredoxin domain-con 39.7 5.6E+02 0.012 28.3 18.3 120 148-270 143-263 (304)
311 KOG2280 Vacuolar assembly/sort 39.1 8.6E+02 0.019 30.3 29.9 342 81-491 401-795 (829)
312 PTZ00415 transmission-blocking 38.9 10 0.00022 49.6 -0.0 6 802-807 362-367 (2849)
313 PF05470 eIF-3c_N: Eukaryotic 38.8 21 0.00046 43.2 2.6 12 806-817 340-351 (595)
314 PF13929 mRNA_stabil: mRNA sta 38.6 5.8E+02 0.013 28.2 15.9 135 155-291 144-289 (292)
315 PF13512 TPR_18: Tetratricopep 38.5 3.9E+02 0.0085 26.2 12.2 73 79-151 20-94 (142)
316 COG2178 Predicted RNA-binding 37.9 2.8E+02 0.006 28.8 9.9 97 248-348 34-149 (204)
317 COG2178 Predicted RNA-binding 37.5 2.6E+02 0.0056 29.0 9.6 125 300-452 20-148 (204)
318 PF10366 Vps39_1: Vacuolar sor 37.3 1.4E+02 0.003 27.8 7.3 27 106-132 41-67 (108)
319 TIGR02561 HrpB1_HrpK type III 37.3 4E+02 0.0088 26.4 10.6 18 184-201 55-72 (153)
320 PHA02989 ankyrin repeat protei 37.3 2.9E+02 0.0064 32.6 12.0 142 90-243 17-175 (494)
321 PF11207 DUF2989: Protein of u 36.8 2.5E+02 0.0054 29.3 9.6 74 260-339 123-197 (203)
322 TIGR02561 HrpB1_HrpK type III 36.3 4.4E+02 0.0096 26.2 10.9 47 298-350 25-74 (153)
323 PF09397 Ftsk_gamma: Ftsk gamm 35.6 28 0.00062 29.3 2.2 38 826-863 5-55 (65)
324 PF11207 DUF2989: Protein of u 35.4 2.5E+02 0.0053 29.3 9.3 77 185-263 119-198 (203)
325 PHA03100 ankyrin repeat protei 34.7 2.9E+02 0.0064 32.1 11.4 159 185-360 117-283 (480)
326 KOG2610 Uncharacterized conser 34.2 7.3E+02 0.016 28.0 15.8 150 81-234 115-273 (491)
327 smart00843 Ftsk_gamma This dom 33.7 34 0.00074 28.6 2.3 37 826-862 4-53 (63)
328 COG5406 Nucleosome binding fac 33.5 16 0.00034 43.3 0.4 19 712-730 975-993 (1001)
329 PF05764 YL1: YL1 nuclear prot 33.3 30 0.00065 37.0 2.5 19 757-775 176-194 (240)
330 cd01041 Rubrerythrin Rubreryth 33.2 53 0.0012 31.5 4.0 68 770-848 45-112 (134)
331 PRK09687 putative lyase; Provi 32.8 6.9E+02 0.015 27.3 29.4 203 101-331 65-278 (280)
332 KOG1832 HIV-1 Vpr-binding prot 32.7 14 0.00031 45.4 -0.1 10 547-556 1271-1280(1516)
333 KOG1999 RNA polymerase II tran 32.5 36 0.00079 42.5 3.2 49 760-824 162-214 (1024)
334 PF11663 Toxin_YhaV: Toxin wit 32.3 39 0.00085 32.7 2.8 35 182-218 104-138 (140)
335 KOG2423 Nucleolar GTPase [Gene 32.2 68 0.0015 36.5 5.0 14 504-517 411-424 (572)
336 COG3947 Response regulator con 32.1 2.3E+02 0.0049 31.3 8.7 55 145-199 285-339 (361)
337 KOG0403 Neoplastic transformat 32.1 8.9E+02 0.019 28.4 17.2 69 323-401 512-580 (645)
338 PF14669 Asp_Glu_race_2: Putat 31.9 6.1E+02 0.013 26.4 14.7 63 324-388 136-206 (233)
339 PF14669 Asp_Glu_race_2: Putat 31.5 6.2E+02 0.013 26.4 15.7 171 98-268 2-206 (233)
340 PF09613 HrpB1_HrpK: Bacterial 31.5 5.5E+02 0.012 25.8 13.9 104 80-192 21-128 (160)
341 KOG1130 Predicted G-alpha GTPa 31.5 8.8E+02 0.019 28.2 13.3 266 113-394 26-346 (639)
342 PF13431 TPR_17: Tetratricopep 31.0 60 0.0013 23.3 3.0 18 175-192 15-32 (34)
343 COG4785 NlpI Lipoprotein NlpI, 31.0 6.7E+02 0.015 26.7 17.5 179 152-350 78-267 (297)
344 PF00515 TPR_1: Tetratricopept 30.9 91 0.002 21.6 4.0 25 176-200 4-28 (34)
345 TIGR00754 bfr bacterioferritin 30.5 44 0.00095 33.0 3.0 66 770-843 50-115 (157)
346 COG5108 RPO41 Mitochondrial DN 30.5 2.1E+02 0.0046 34.8 8.7 75 213-290 33-113 (1117)
347 PRK09687 putative lyase; Provi 30.2 7.5E+02 0.016 27.0 24.6 123 242-392 141-263 (280)
348 PF05285 SDA1: SDA1; InterPro 30.2 23 0.0005 39.7 1.0 11 726-736 195-205 (324)
349 KOG2897 DNA-binding protein YL 29.3 32 0.00068 38.6 1.8 16 629-644 53-68 (390)
350 cd01052 DPSL DPS-like protein, 29.3 88 0.0019 30.2 4.9 67 769-836 49-119 (148)
351 COG4455 ImpE Protein of avirul 28.7 3.2E+02 0.007 29.0 8.8 75 178-253 6-82 (273)
352 KOG3130 Uncharacterized conser 28.1 18 0.00039 40.6 -0.3 18 556-573 183-200 (514)
353 COG4649 Uncharacterized protei 28.1 6.8E+02 0.015 25.8 16.0 126 77-202 66-196 (221)
354 PF10579 Rapsyn_N: Rapsyn N-te 28.0 1E+02 0.0023 27.1 4.4 50 332-387 18-67 (80)
355 KOG4648 Uncharacterized conser 27.9 3.2E+02 0.007 30.7 9.1 84 113-207 106-197 (536)
356 PF11663 Toxin_YhaV: Toxin wit 27.9 59 0.0013 31.5 3.1 34 373-414 105-138 (140)
357 PF00515 TPR_1: Tetratricopept 27.7 1.5E+02 0.0033 20.4 4.6 27 106-132 3-29 (34)
358 PF11848 DUF3368: Domain of un 27.6 1.8E+02 0.0038 22.8 5.3 32 116-147 14-45 (48)
359 COG4455 ImpE Protein of avirul 27.6 3.2E+02 0.007 29.0 8.5 55 109-164 6-60 (273)
360 TIGR02508 type_III_yscG type I 27.6 4.3E+02 0.0093 24.6 8.3 50 114-169 49-98 (115)
361 KOG4648 Uncharacterized conser 27.5 1.6E+02 0.0034 33.1 6.6 78 289-389 106-184 (536)
362 PF05944 Phage_term_smal: Phag 27.4 1.1E+02 0.0024 29.6 5.0 80 778-862 5-84 (132)
363 PF10579 Rapsyn_N: Rapsyn N-te 26.9 1.5E+02 0.0033 26.0 5.2 45 185-229 18-64 (80)
364 PF07163 Pex26: Pex26 protein; 26.9 4.2E+02 0.0091 29.1 9.5 89 285-386 88-181 (309)
365 KOG0550 Molecular chaperone (D 26.6 1.1E+03 0.023 27.6 17.8 151 217-393 178-351 (486)
366 PF03115 Astro_capsid: Astrovi 26.5 22 0.00047 44.2 0.0 12 638-649 676-687 (787)
367 KOG2063 Vacuolar assembly/sort 26.1 1.5E+03 0.032 29.1 17.7 27 106-132 506-532 (877)
368 TIGR02508 type_III_yscG type I 26.0 5.2E+02 0.011 24.0 8.5 86 224-324 21-106 (115)
369 PF07079 DUF1347: Protein of u 25.9 1.1E+03 0.025 27.7 26.0 282 79-392 16-327 (549)
370 PF07719 TPR_2: Tetratricopept 25.4 1.3E+02 0.0028 20.5 4.0 24 177-200 5-28 (34)
371 COG4649 Uncharacterized protei 24.9 7.7E+02 0.017 25.3 15.7 130 140-270 60-194 (221)
372 cd08819 CARD_MDA5_2 Caspase ac 24.8 3.9E+02 0.0086 24.0 7.4 38 220-262 48-85 (88)
373 PF07079 DUF1347: Protein of u 24.7 1.2E+03 0.026 27.5 31.2 195 175-389 263-521 (549)
374 PHA02537 M terminase endonucle 24.5 60 0.0013 34.5 2.8 89 768-862 31-119 (230)
375 KOG0127 Nucleolar protein fibr 24.4 25 0.00054 41.1 -0.0 10 817-826 493-502 (678)
376 PRK08561 rps15p 30S ribosomal 24.4 1.9E+02 0.0042 28.5 6.0 71 532-605 28-108 (151)
377 KOG1832 HIV-1 Vpr-binding prot 24.3 30 0.00065 42.8 0.6 9 554-562 1312-1320(1516)
378 TIGR02710 CRISPR-associated pr 24.2 7.2E+02 0.016 28.6 11.4 51 79-129 140-196 (380)
379 PF11846 DUF3366: Domain of un 24.1 2.7E+02 0.0059 28.2 7.6 55 292-350 120-174 (193)
380 KOG1920 IkappaB kinase complex 24.0 1.8E+03 0.039 29.3 22.3 116 205-347 932-1053(1265)
381 PF04147 Nop14: Nop14-like fam 24.0 35 0.00077 43.3 1.2 23 722-747 425-447 (840)
382 KOG1513 Nuclear helicase MOP-3 23.7 1.1E+03 0.024 29.8 13.1 73 471-556 575-652 (1300)
383 COG3947 Response regulator con 23.7 1E+03 0.022 26.4 14.6 102 275-390 222-340 (361)
384 COG3898 Uncharacterized membra 23.7 1.2E+03 0.026 27.1 27.6 288 142-459 85-397 (531)
385 KOG2270 Serine/threonine prote 23.3 71 0.0015 36.5 3.2 20 381-400 215-234 (520)
386 KOG4483 Uncharacterized conser 22.5 43 0.00093 37.7 1.3 59 671-742 363-424 (528)
387 PF10555 MraY_sig1: Phospho-N- 22.5 16 0.00034 20.8 -1.0 10 786-795 2-11 (13)
388 PF07163 Pex26: Pex26 protein; 22.3 7E+02 0.015 27.5 10.2 85 110-196 89-181 (309)
389 COG0735 Fur Fe2+/Zn2+ uptake r 22.2 3.1E+02 0.0068 26.8 7.2 43 163-205 10-52 (145)
390 PF13431 TPR_17: Tetratricopep 22.1 1.3E+02 0.0029 21.4 3.4 23 102-124 11-33 (34)
391 PF06025 DUF913: Domain of Unk 22.0 58 0.0013 37.3 2.3 62 773-839 74-136 (379)
392 PF05320 Pox_RNA_Pol_19: Poxvi 21.8 39 0.00085 33.1 0.8 12 659-670 28-39 (167)
393 KOG0403 Neoplastic transformat 21.7 3E+02 0.0064 32.1 7.6 89 177-270 513-609 (645)
394 PF07721 TPR_4: Tetratricopept 21.6 1.3E+02 0.0027 20.0 3.0 23 366-388 4-26 (26)
395 cd00907 Bacterioferritin Bacte 21.0 1.3E+02 0.0028 29.2 4.4 24 770-793 49-72 (153)
396 PF10366 Vps39_1: Vacuolar sor 21.0 1.2E+02 0.0025 28.3 3.7 26 366-391 42-67 (108)
397 PF04147 Nop14: Nop14-like fam 21.0 41 0.00089 42.7 0.9 9 788-796 537-545 (840)
398 PRK14951 DNA polymerase III su 20.8 1.4E+03 0.03 28.1 13.8 29 177-206 255-283 (618)
399 PRK10564 maltose regulon perip 20.6 1.6E+02 0.0035 32.5 5.2 43 101-143 253-296 (303)
400 PF09670 Cas_Cas02710: CRISPR- 20.3 1.3E+03 0.027 26.5 12.7 54 78-132 140-197 (379)
401 COG1747 Uncharacterized N-term 20.1 1.5E+03 0.033 27.1 19.8 163 102-270 64-232 (711)
402 PHA02876 ankyrin repeat protei 20.0 1.7E+03 0.036 27.4 15.1 52 26-77 145-198 (682)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.2e-69 Score=668.71 Aligned_cols=535 Identities=14% Similarity=0.138 Sum_probs=432.2
Q ss_pred CCCHHHHHHHHHHHHhCCChhhH----HHHHHcCCCCChhHHHHHHHHHHccCChHHH--------------------HH
Q 002761 20 QTGVVPIRSAMSSPEKKTRRKKQ----QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFM--------------------EE 75 (883)
Q Consensus 20 ~pd~~syn~LI~~~~k~g~~~~A----~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~--------------------~~ 75 (883)
.||+++||++|++|++.|++++| .+|...|+.||.+||+++|++|++.+.+..+ ..
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 68999999999999999999999 6677779999999999999999877655433 33
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002761 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155 (883)
Q Consensus 76 L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~ 155 (883)
+..|+++|+++.|.++|++|. .||.++||+||.+|++.|++++|+++|++|...|+.||.+||+++|.+|++.|++
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 457899999999999999997 6888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761 156 TKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234 (883)
Q Consensus 156 ~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M 234 (883)
+.|.++|..|.+.|+.|+. +||+||.+|+++|++++|.++|++|.. ||.++||+||.+|++.|++++|+++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999988888887 888877777777777777777666643 45555555555555555555555555555
Q ss_pred HHc-----------------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC
Q 002761 235 EAA-----------------------------------GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 279 (883)
Q Consensus 235 ~~~-----------------------------------G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd 279 (883)
.+. |+.|+..+||+||++|+++|++++|.++|++|. .||
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~d 454 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP------EKD 454 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC------CCC
Confidence 544 455556677788888888889999999999888 688
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCc-----
Q 002761 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK----- 354 (883)
Q Consensus 280 ~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~----- 354 (883)
.++||+||.+|+++| +.++|+.+|++|.. +++||.+||+++|.+|++.|.++.+.+++..|.+.+..++
T Consensus 455 ~vs~~~mi~~~~~~g---~~~eA~~lf~~m~~---~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 455 VISWTSIIAGLRLNN---RCFEALIFFRQMLL---TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred eeeHHHHHHHHHHCC---CHHHHHHHHHHHHh---CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 899999999999999 66799999999986 6999999999999999999999999999999988776543
Q ss_pred -cccccCCCCc----------------HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceeh-----hhhHHHHHH
Q 002761 355 -VLHNEGNFGD----------------PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMIL-----SRKYRTLVS 412 (883)
Q Consensus 355 -~~~~~~~~~d----------------tYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~-----~~~y~~Ll~ 412 (883)
++.+|.+|+. +||+||.+|+++|+.++|+++|++|.+.|+ .|+..++ +|...++++
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~--~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV--NPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCcccHHHHHHHHhhcChHH
Confidence 3344555554 799999999999999999999999999998 4554441 244445555
Q ss_pred HHhhhhHHhh-hhcchHHH-----HHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHHHhhch-HH-
Q 002761 413 SWIEPLQEEA-ELGYEIDY-----IARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGK-KY- 484 (883)
Q Consensus 413 ~~~~~~~~m~-~~g~~~D~-----l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~-~~- 484 (883)
.+.+.+..|. .+|+.|+. +...+.++|++++|.++++.| +++||..+| .++++.|+.++. +.
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~-------~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVW-------GALLNACRIHRHVELG 676 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHH-------HHHHHHHHHcCChHHH
Confidence 5566777776 45555542 223344499999999999855 799999888 666667777653 33
Q ss_pred ---HHHHHH-HHhcCCCccccC------CChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHHHhhCCCCChhh
Q 002761 485 ---HRKLLR-TLQNEGPAVLGD------VSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGT 554 (883)
Q Consensus 485 ---A~~Ll~-eM~~~G~~~lls------~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~ef~~~g~~~~~~ 554 (883)
|.++++ ++.+.+.|++++ ++|+...+++..|++ ++++|.|||||+++++.+|.|.+++.+||++
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~------~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~ 750 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE------NGLTVDPGCSWVEVKGKVHAFLTDDESHPQI 750 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH------cCCCCCCCccEEEECCEEEEEecCCCCCcch
Confidence 444554 446788888766 799999999999998 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcchhhchhHHHHHHH
Q 002761 555 RNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELI 596 (883)
Q Consensus 555 ~~~l~~~l~~~~~~~~~~G~~lyvp~~~~~~~~vdee~~~~~ 596 (883)
.+ ||..|+.+.+.++..| |+|+++.++++.+||.++.+
T Consensus 751 ~~-i~~~l~~l~~~~~~~g---~~~~~~~~~~~~~~~k~~~~ 788 (857)
T PLN03077 751 KE-INTVLEGFYEKMKASG---LAGSESSSMDEIEVSKDDIF 788 (857)
T ss_pred HH-HHHHHHHHHHHHHhCC---cCCCcchhccccHHHHHHHH
Confidence 99 9999999999999999 99999988865555555444
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-64 Score=615.57 Aligned_cols=501 Identities=17% Similarity=0.175 Sum_probs=443.1
Q ss_pred CHHHHHHHHHHHHhCCChhhHH----HHHHc-CCCCChhHHHHHHHHHHccCChHHHHHHH-------------------
Q 002761 22 GVVPIRSAMSSPEKKTRRKKQQ----RRQQK-HGDSLLSTNGSVVSAAEQGLRLIFMEELM------------------- 77 (883)
Q Consensus 22 d~~syn~LI~~~~k~g~~~~A~----~M~~~-gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~------------------- 77 (883)
+.++||++|.+|.+.|++++|. .|... ++.||.+||++++.+|++.+.+..+..++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 4568999999999999999994 44443 47899999999999999988776554443
Q ss_pred -HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002761 78 -QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156 (883)
Q Consensus 78 -~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~ 156 (883)
.|+++|+++.|.++|++|. .||.++||+||.+|++.|++++|+++|++|...|+.||..||++++.+|++.|...
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 6889999999999999997 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761 157 KGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235 (883)
Q Consensus 157 ~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~ 235 (883)
.+.++|..+.+.|+.|+. +||+||++|+++|++++|.++|++|.. +|.++||+||.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999998 999999999999999999999999965 788999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC
Q 002761 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315 (883)
Q Consensus 236 ~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~g 315 (883)
+.|+.||.+||+++|.+|++.|+++.|.+++..|. +.|+.||..+||+||.+|++.| +.++|.++|++|.+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~--~~g~~~d~~~~~~Li~~y~k~G---~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI--RTGFPLDIVANTALVDLYSKWG---RMEDARNVFDRMPR---- 388 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH--HhCCCCCeeehHHHHHHHHHCC---CHHHHHHHHHhCCC----
Confidence 99999999999999999999999999999999999 7899999999999999999999 66799999999853
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCC
Q 002761 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK-DNQ 394 (883)
Q Consensus 316 i~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~-~Gi 394 (883)
||.+|||+||.+|++.|+.++|.++|++|.+.|+.|+.. ||+++|.+|++.|.+++|.++|+.|.+ .|+
T Consensus 389 --~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~--------T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 389 --KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV--------TFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred --CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH--------HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999999999999888888766 799999999999999999999999976 466
Q ss_pred CCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHH
Q 002761 395 PVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFK 474 (883)
Q Consensus 395 ~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~ 474 (883)
.|+.. +|+|++|.+++ .|++++|.++++ ++++.|+..+| +.++.
T Consensus 459 --~p~~~---------------------~y~~li~~l~r----~G~~~eA~~~~~---~~~~~p~~~~~------~~Ll~ 502 (697)
T PLN03081 459 --KPRAM---------------------HYACMIELLGR----EGLLDEAYAMIR---RAPFKPTVNMW------AALLT 502 (697)
T ss_pred --CCCcc---------------------chHhHHHHHHh----cCCHHHHHHHHH---HCCCCCCHHHH------HHHHH
Confidence 56553 57778888888 999999999997 56899998776 24555
Q ss_pred HHHHhhchHHHHHHHHHHhcC-----CCccccC------CChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHH
Q 002761 475 QRCLEDGKKYHRKLLRTLQNE-----GPAVLGD------VSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEE 543 (883)
Q Consensus 475 ~~c~~g~~~~A~~Ll~eM~~~-----G~~~lls------~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~e 543 (883)
+++..|+.+.|..+++++.+. +.|.++. ++|+....++..|++ ++++|.|||||+++.+.+|.
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~------~g~~k~~g~s~i~~~~~~~~ 576 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR------KGLSMHPACTWIEVKKQDHS 576 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH------cCCccCCCeeEEEECCeEEE
Confidence 566777889999998887543 3343333 688888888888887 88999999999999999999
Q ss_pred HhhCCCCChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhhchhHHHHHH
Q 002761 544 LDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDEL 595 (883)
Q Consensus 544 f~~~g~~~~~~~~~l~~~l~~~~~~~~~~G~~lyvp~~~~~~~~vdee~~~~ 595 (883)
|.+++..||.+.+ ||+.|.++...++..| |+|+++.+++++++|.++-
T Consensus 577 f~~~d~~h~~~~~-i~~~l~~l~~~~~~~g---y~~~~~~~~~~~~~~~~~~ 624 (697)
T PLN03081 577 FFSGDRLHPQSRE-IYQKLDELMKEISEYG---YVAEENELLPDVDEDEEKV 624 (697)
T ss_pred EccCCCCCccHHH-HHHHHHHHHHHHHHcC---CCCCcchhhccccHHHHHH
Confidence 9999999999988 9999999999999999 9999999999998776653
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-60 Score=591.68 Aligned_cols=500 Identities=14% Similarity=0.135 Sum_probs=423.7
Q ss_pred CCCCHHHHHHHHHHHHhCCChhhH----HHHHHcCC-CCChhHHHHHHHHHHccCChH----------------HHHHHH
Q 002761 19 SQTGVVPIRSAMSSPEKKTRRKKQ----QRRQQKHG-DSLLSTNGSVVSAAEQGLRLI----------------FMEELM 77 (883)
Q Consensus 19 ~~pd~~syn~LI~~~~k~g~~~~A----~~M~~~gv-~Pd~~ty~~ll~a~~~~~~~~----------------~~~~L~ 77 (883)
..++...|..++..|++.|++++| .+|.+.|+ .|+..+++.++.+|++.+.+. +...|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 367788899999999999999999 45555564 577888888888888776543 333445
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK 157 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~ 157 (883)
.+++.|+++.|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|...|+.||.+||++||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 68888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761 158 GLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAK--GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234 (883)
Q Consensus 158 A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~--~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M 234 (883)
|.++|+.|.+.|+.||. +||+||.+|++.|++++|.++|++|.. .|+.||.+||++||.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999998 999999999999999999999999976 678899999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314 (883)
Q Consensus 235 ~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~ 314 (883)
.+.|+.|+..+||+||.+|++.|++++|.++|++|. ..|+.||.+||++||.+|++.| +.++|+++|++|.+ .
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~--~~Gv~PD~~TynsLI~a~~k~G---~~eeA~~l~~eM~k--~ 678 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK--KKGVKPDEVFFSALVDVAGHAG---DLDKAFEILQDARK--Q 678 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHH--c
Confidence 999999999999999999999999999999999999 7899999999999999999999 66699999999998 6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 002761 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 394 (883)
Q Consensus 315 gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi 394 (883)
|+.||..||++||.+|++.|++++|.++|+.|.+.+..|++. +||+||.+|++.|++++|+++|++|...|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv--------tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS--------TMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999998877777765 699999999999999999999999999987
Q ss_pred CCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHH
Q 002761 395 PVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFK 474 (883)
Q Consensus 395 ~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~ 474 (883)
.|+..+ |+.++.+|++ .|.+++|..++..|.+.|+.||. .+|++++..+..
T Consensus 751 --~Pd~~T----y~sLL~a~~k---------------------~G~le~A~~l~~~M~k~Gi~pd~--~tynsLIglc~~ 801 (1060)
T PLN03218 751 --CPNTIT----YSILLVASER---------------------KDDADVGLDLLSQAKEDGIKPNL--VMCRCITGLCLR 801 (1060)
T ss_pred --CCCHHH----HHHHHHHHHH---------------------CCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHH
Confidence 555544 7777665543 89999999999999999999998 445555532221
Q ss_pred HHHHh-------------------hchHHHHHHHHHHhcCCCccccCCChhHHHHHHHHHHhhhcCCCccccCcccchHH
Q 002761 475 QRCLE-------------------DGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKM 535 (883)
Q Consensus 475 ~~c~~-------------------g~~~~A~~Ll~eM~~~G~~~lls~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ 535 (883)
.+.+. .....|..+|++|.+.|+.| +..+|..|+.++++.+. +.
T Consensus 802 ~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P----d~~T~~~vL~cl~~~~~-------------~~ 864 (1060)
T PLN03218 802 RFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP----TMEVLSQVLGCLQLPHD-------------AT 864 (1060)
T ss_pred HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhccccc-------------HH
Confidence 11111 12367999999999999999 99999999988766333 55
Q ss_pred HHHHHHHHHhhCCC-CChhhHHHHHHHHHH-------HHHHHHhcCCCCCCCCCc
Q 002761 536 VVSELKEELDAQGL-PTDGTRNVLYQRVQK-------ARRINRSRGRPLWVPPVE 582 (883)
Q Consensus 536 ev~~l~~ef~~~g~-~~~~~~~~l~~~l~~-------~~~~~~~~G~~lyvp~~~ 582 (883)
.+..++++|...+. +|..+|.+|+..+++ +-..|...| .+|+++
T Consensus 865 ~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~G---i~p~~~ 916 (1060)
T PLN03218 865 LRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLG---VVPSVS 916 (1060)
T ss_pred HHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcC---CCCCcc
Confidence 67788888887776 777799989888753 345666799 888876
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-59 Score=580.78 Aligned_cols=499 Identities=16% Similarity=0.186 Sum_probs=419.7
Q ss_pred CCHHHHHHHHHHHHhCCChhhH----HHHHHcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002761 21 TGVVPIRSAMSSPEKKTRRKKQ----QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMI 96 (883)
Q Consensus 21 pd~~syn~LI~~~~k~g~~~~A----~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~ 96 (883)
||.++||++|++|++.|+++.| .+|.+.|+.||.++|+++|++|+ ++|+++.|.++|++|.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~---------------k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA---------------KSGKVDAMFEVFHEMV 499 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------------hCcCHHHHHHHHHHHH
Confidence 5566666666666666666666 34444566666666666666655 4588899999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCChhH
Q 002761 97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQ 174 (883)
Q Consensus 97 ~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~--~g~~pdv 174 (883)
+.|+.||.++||+||.+|++.|++++|+++|++|...|+.||.+||++||.+|++.|++++|.++|.+|.+ .|+.|+.
T Consensus 500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 6889998
Q ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002761 175 -AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253 (883)
Q Consensus 175 -tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y 253 (883)
+||+||.+|+++|++++|.++|++|.+.|+.|+.++||+||.+|++.|++++|.++|++|.+.|+.||.+||++||++|
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHc
Q 002761 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333 (883)
Q Consensus 254 ~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~ 333 (883)
++.|++++|.++|+.|. +.|+.||..+||+||.+|++.| +.++|.++|++|.+ .|+.||.+||++||.+|++.
T Consensus 660 ~k~G~~eeA~~l~~eM~--k~G~~pd~~tynsLI~ay~k~G---~~eeA~~lf~eM~~--~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 660 GHAGDLDKAFEILQDAR--KQGIKLGTVSYSSLMGACSNAK---NWKKALELYEDIKS--IKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HhCCCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999 8999999999999999999999 77799999999998 69999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHH
Q 002761 334 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSS 413 (883)
Q Consensus 334 G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~ 413 (883)
|++++|.++|++|.+.++.|+.. ||++||.+|++.|++++|.++|.+|.+.|+ .|+..+ |++++.-
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~--------Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi--~pd~~t----ynsLIgl 798 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTI--------TYSILLVASERKDDADVGLDLLSQAKEDGI--KPNLVM----CRCITGL 798 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCCHHH----HHHHHHH
Confidence 99999999999999988888766 799999999999999999999999999998 566655 7777754
Q ss_pred HhhhhHHhhhhcchHHHH--HHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHHHhhchHHHHHHHHH
Q 002761 414 WIEPLQEEAELGYEIDYI--ARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRT 491 (883)
Q Consensus 414 ~~~~~~~m~~~g~~~D~l--~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~~~A~~Ll~e 491 (883)
|...+......+..+-.+ +......+..++|..+|++|.+.|+.||..+| + .+|.++|+.++...+..++++
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~--~----~vL~cl~~~~~~~~~~~m~~~ 872 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL--S----QVLGCLQLPHDATLRNRLIEN 872 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH--H----HHHHHhcccccHHHHHHHHHH
Confidence 443222211111100000 01111234568899999999999999998555 4 444446888889999999999
Q ss_pred HhcCCCccccCCChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHHHhhCCCCChhh-----------------
Q 002761 492 LQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGT----------------- 554 (883)
Q Consensus 492 M~~~G~~~lls~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~ef~~~g~~~~~~----------------- 554 (883)
|...+..| +..+|+.++.++++. ..++..++++|...|+.+.-.
T Consensus 873 m~~~~~~~----~~~~y~~Li~g~~~~---------------~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~~a 933 (1060)
T PLN03218 873 LGISADSQ----KQSNLSTLVDGFGEY---------------DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFA 933 (1060)
T ss_pred hccCCCCc----chhhhHHHHHhhccC---------------hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcchh
Confidence 99999888 999999999987541 235888999999999833322
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 002761 555 -RNVLYQRVQKARRINRSRGRPLWVPPVEE 583 (883)
Q Consensus 555 -~~~l~~~l~~~~~~~~~~G~~lyvp~~~~ 583 (883)
.-.|...|..+.+...+ | -..|.+-.
T Consensus 934 a~~~l~~wl~~~~~~~~~-g--~~lp~~~~ 960 (1060)
T PLN03218 934 AEVYLLTILKGLKHRLAA-G--AKLPNVTI 960 (1060)
T ss_pred HHHHHHHHHHHHHHHHhc-c--CcCCccee
Confidence 23455667776666655 4 26676654
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.1e-58 Score=569.98 Aligned_cols=504 Identities=13% Similarity=0.094 Sum_probs=393.1
Q ss_pred CCCHHHHHHHHHHHHhCCChhhH----HHHHHcCCCCChhHHHHHHHHHHccCChHHHHH--------------------
Q 002761 20 QTGVVPIRSAMSSPEKKTRRKKQ----QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEE-------------------- 75 (883)
Q Consensus 20 ~pd~~syn~LI~~~~k~g~~~~A----~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~-------------------- 75 (883)
+++..++|++|.+|++.|++++| ..|.+.|+.|+..+|+.++++|.+.+.+..+..
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 46788899999999999999999 566667999999999999999987766544333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002761 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155 (883)
Q Consensus 76 L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~ 155 (883)
+..|++.|+++.|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|++.+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 335789999999999999998 6888999999999999999999999999999889999888887777777666666
Q ss_pred HHHHHHHHHHHHcCCChhH--------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Q 002761 156 TKGLEILAAMEKINYDIRQ--------------------------------AWLILVEELVRNKYLEDANKVFLRGAKGG 203 (883)
Q Consensus 156 ~~A~~l~~~m~~~g~~pdv--------------------------------tyn~LI~~y~k~G~~eeA~~lf~~M~~~g 203 (883)
..+.++|..|.+.|+.|++ +||+||.+|++.|++++|.++|.+|.+.|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 6666666666666655554 45555555555555555566666666667
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHH
Q 002761 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY 283 (883)
Q Consensus 204 i~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~ty 283 (883)
+.||.+||+++|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||.++|
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~d~~s~ 357 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME------TKDAVSW 357 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC------CCCeeeH
Confidence 7777777777777777777777777777777777888888889999999999999999999999999 7899999
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccc------c
Q 002761 284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL------H 357 (883)
Q Consensus 284 n~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~------~ 357 (883)
|+||.+|++.| +.++|+++|++|.+ .|+.||..||+++|.+|++.|++++|.++|+.|.+.|..+... .
T Consensus 358 n~li~~~~~~g---~~~~A~~lf~~M~~--~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 358 TAMISGYEKNG---LPDKALETYALMEQ--DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHH--hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 99999999999 66699999999998 6999999999999999999999999999999999888766543 2
Q ss_pred ccCCCCc-----------------HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhh----
Q 002761 358 NEGNFGD-----------------PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE---- 416 (883)
Q Consensus 358 ~~~~~~d-----------------tYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~---- 416 (883)
+|.++++ +||+||.+|+++|+.++|+.+|++|.. ++ +|+..+ |.+++.+|.+
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~--~pd~~t----~~~lL~a~~~~g~l 505 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL--KPNSVT----LIAALSACARIGAL 505 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC--CCCHhH----HHHHHHHHhhhchH
Confidence 2222222 555555556555666666666666643 33 444433 5555554432
Q ss_pred -----hhHHhhhhcchH-----HHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHHHhhchHHHH
Q 002761 417 -----PLQEEAELGYEI-----DYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHR 486 (883)
Q Consensus 417 -----~~~~m~~~g~~~-----D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~~~A~ 486 (883)
....+...|..+ +.+..++++.|.+++|..+|+.| .||..+| | .+|.++|+.|+.++|.
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~--n----~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSW--N----ILLTGYVAHGKGSMAV 574 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhH--H----HHHHHHHHcCCHHHHH
Confidence 223333344333 34556677789999999888854 6777555 3 6677799999999999
Q ss_pred HHHHHHhcCCCccccCCChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHHHh-hCCC-CChhhHHHHHHHHHH
Q 002761 487 KLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELD-AQGL-PTDGTRNVLYQRVQK 564 (883)
Q Consensus 487 ~Ll~eM~~~G~~~lls~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~ef~-~~g~-~~~~~~~~l~~~l~~ 564 (883)
++|++|.+.|+.| +..||..++.++.+.|. +.++..++++|. ..|+ |...+|.++...+.+
T Consensus 575 ~lf~~M~~~g~~P----d~~T~~~ll~a~~~~g~-------------v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 575 ELFNRMVESGVNP----DEVTFISLLCACSRSGM-------------VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred HHHHHHHHcCCCC----CcccHHHHHHHHhhcCh-------------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 9999999999999 99999999999988776 788999999999 5677 777799999999999
Q ss_pred HHHHHHhcC
Q 002761 565 ARRINRSRG 573 (883)
Q Consensus 565 ~~~~~~~~G 573 (883)
.++..++..
T Consensus 638 ~G~~~eA~~ 646 (857)
T PLN03077 638 AGKLTEAYN 646 (857)
T ss_pred CCCHHHHHH
Confidence 888877765
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-54 Score=530.18 Aligned_cols=420 Identities=14% Similarity=0.114 Sum_probs=385.4
Q ss_pred CCCHHHHHHHHHHHHhCCChhhH----HHHHHcCCCCChhHHHHHHHHHHccCChHHHHHH----------------HHH
Q 002761 20 QTGVVPIRSAMSSPEKKTRRKKQ----QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEEL----------------MQH 79 (883)
Q Consensus 20 ~pd~~syn~LI~~~~k~g~~~~A----~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L----------------~~~ 79 (883)
.||..+|+++|.+|++.+.++.| ..|.+.|+.||.++||.++++|++.+.++.+..+ .+|
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~ 199 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHH
Confidence 57999999999999999999888 6677779999999999999999999987655554 479
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002761 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159 (883)
Q Consensus 80 ~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~ 159 (883)
++.|++++|..+|++|.+.|+.|+..+|+++|.+|++.|..+.+.+++..|.+.|+.||..+|++||.+|++.|++++|.
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761 160 EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238 (883)
Q Consensus 160 ~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G 238 (883)
++|+.|.. +++ +||+||.+|++.|++++|.++|++|.+.|+.||.+||+++|.+|++.|++++|.+++..|.+.|
T Consensus 280 ~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 280 CVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99999965 355 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 002761 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318 (883)
Q Consensus 239 ~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P 318 (883)
+.||..+||+||++|+++|++++|.++|++|. .||.+|||+||.+|+++| +.++|+++|++|.+ .|+.|
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~------~~d~~t~n~lI~~y~~~G---~~~~A~~lf~~M~~--~g~~P 424 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMP------RKNLISWNALIAGYGNHG---RGTKAVEMFERMIA--EGVAP 424 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC------CCCeeeHHHHHHHHHHcC---CHHHHHHHHHHHHH--hCCCC
Confidence 99999999999999999999999999999999 799999999999999999 77799999999998 79999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 002761 319 NVKTYALLVECFTKYCAVTEAIRHFRALQN-YEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397 (883)
Q Consensus 319 d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~-~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~ 397 (883)
|.+||+++|.+|++.|.+++|.++|+.|.+ .++.|+.. +|++||++|+++|++++|.++|++| ++.
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~--------~y~~li~~l~r~G~~~eA~~~~~~~-----~~~ 491 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM--------HYACMIELLGREGLLDEAYAMIRRA-----PFK 491 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc--------chHhHHHHHHhcCCHHHHHHHHHHC-----CCC
Confidence 999999999999999999999999999985 57777766 5999999999999999999999987 346
Q ss_pred CcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHH
Q 002761 398 PRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRC 477 (883)
Q Consensus 398 p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c 477 (883)
|+..+ |++|+.+|.. .|.++.|...++.+. ++.|+. ..+|+ .++..||
T Consensus 492 p~~~~----~~~Ll~a~~~---------------------~g~~~~a~~~~~~l~--~~~p~~-~~~y~----~L~~~y~ 539 (697)
T PLN03081 492 PTVNM----WAALLTACRI---------------------HKNLELGRLAAEKLY--GMGPEK-LNNYV----VLLNLYN 539 (697)
T ss_pred CCHHH----HHHHHHHHHH---------------------cCCcHHHHHHHHHHh--CCCCCC-CcchH----HHHHHHH
Confidence 66654 8888876654 899999999998774 556752 23455 4455699
Q ss_pred HhhchHHHHHHHHHHhcCCCcc
Q 002761 478 LEDGKKYHRKLLRTLQNEGPAV 499 (883)
Q Consensus 478 ~~g~~~~A~~Ll~eM~~~G~~~ 499 (883)
+.|++++|.+++++|.+.|+..
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999863
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=2.1e-18 Score=214.09 Aligned_cols=469 Identities=14% Similarity=0.078 Sum_probs=284.9
Q ss_pred CCHHHHHHHHHHHHhCCChhhHHHHHHc--CCCCCh-hHHHHHHHHHHccCChHHHH-------------------HHHH
Q 002761 21 TGVVPIRSAMSSPEKKTRRKKQQRRQQK--HGDSLL-STNGSVVSAAEQGLRLIFME-------------------ELMQ 78 (883)
Q Consensus 21 pd~~syn~LI~~~~k~g~~~~A~~M~~~--gv~Pd~-~ty~~ll~a~~~~~~~~~~~-------------------~L~~ 78 (883)
.+...|..+...+...|++++|.+.++. ...|+. .....++..+.+.+.+.-+. ....
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 474 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 3455666666666777777766444433 122221 22222333343333332211 1123
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A 158 (883)
+...|+++.|...|+++.+.. +.+...+..+...+...|++++|.++|+++.... +.+..++..+...+.+.|+.++|
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHH
Confidence 556677777777777776543 3345566667777777777777777777776543 23566677777777777777777
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238 (883)
Q Consensus 159 ~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G 238 (883)
..++.++.+.+......+..+...|.+.|++++|..+++.+.... +.+..+|..+..+|.+.|++++|...|+.+.+..
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777777766543322266677777777777777777777776532 3455677777777777777777777777776543
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 002761 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318 (883)
Q Consensus 239 ~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P 318 (883)
+.+...+..+...|.+.|++++|..+|+++.. ..+.+..+|+.+...+...| +.++|.++++.+.+ ...+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~---~~~~ 701 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALE---LKPDNTEAQIGLAQLLLAAK---RTESAKKIAKSLQK---QHPK 701 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh---hCcC
Confidence 23556667777777777777777777777662 12335667777777777777 55577777777765 2234
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCC
Q 002761 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPP 398 (883)
Q Consensus 319 d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p 398 (883)
+..++..+...+.+.|++++|...|+.+......+ .++..+...|.+.|++++|.+.+.++.... |.
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~ 768 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS----------QNAIKLHRALLASGNTAEAVKTLEAWLKTH---PN 768 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc----------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC
Confidence 55566666667777777777777777776543322 134566777777777777777777776654 33
Q ss_pred cceehhhhHHHHHH---------HHhhhhHHhhhhc----chHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceec
Q 002761 399 RAMILSRKYRTLVS---------SWIEPLQEEAELG----YEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIY 465 (883)
Q Consensus 399 ~~~~~~~~y~~Ll~---------~~~~~~~~m~~~g----~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty 465 (883)
+... +..+.. .+...+....... .....+++.+...|. .+|..+++.... ..|+....
T Consensus 769 ~~~~----~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~-- 839 (899)
T TIGR02917 769 DAVL----RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAI-- 839 (899)
T ss_pred CHHH----HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHH--
Confidence 3322 111111 1222222222111 112245566666777 778888875543 34443222
Q ss_pred cchHHHHHHHHHHhhchHHHHHHHHHHhcCCCccccCCChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHHHh
Q 002761 466 SNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELD 545 (883)
Q Consensus 466 ~~li~~~l~~~c~~g~~~~A~~Ll~eM~~~G~~~lls~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~ef~ 545 (883)
...+...+...|+.++|..+++++.+.+.. +...+..+...+++.|+ +.++...+..|+
T Consensus 840 ---~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~~ 898 (899)
T TIGR02917 840 ---LDTLGWLLVEKGEADRALPLLRKAVNIAPE-----AAAIRYHLALALLATGR-------------KAEARKELDKLL 898 (899)
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHcCC-------------HHHHHHHHHHHh
Confidence 123344467778888899999888776643 56777777777887666 556666665553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=1.6e-17 Score=206.34 Aligned_cols=415 Identities=11% Similarity=0.016 Sum_probs=218.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A 158 (883)
+.+.|++++|..+|+++.+.. +.+...|..+...+...|++++|.+.|..+...... +......++..+.+.|++++|
T Consensus 373 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 373 YLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHH
Confidence 455566666666666666543 234455666666666666666666666666544321 223344455566666666666
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238 (883)
Q Consensus 159 ~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G 238 (883)
..++..+.+.......+|+.+...|.+.|++++|...|.++.+.. +.+...+..+...+...|++++|.++|+.+....
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 529 (899)
T TIGR02917 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529 (899)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 666666655432222256666666666666666666666665432 1233455556666666666666666666665543
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 002761 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318 (883)
Q Consensus 239 ~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P 318 (883)
+.+..+++.+...|.+.|+.++|..+|+++.. . .+.+...+..+...|.+.| +.++|+.+++.+.. ....
T Consensus 530 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~---~~~~ 599 (899)
T TIGR02917 530 -PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE--L-NPQEIEPALALAQYYLGKG---QLKKALAILNEAAD---AAPD 599 (899)
T ss_pred -cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CccchhHHHHHHHHHHHCC---CHHHHHHHHHHHHH---cCCC
Confidence 22455566666666666666666666666541 1 1334455556666666666 44466666666654 2334
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCC
Q 002761 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPP 398 (883)
Q Consensus 319 d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p 398 (883)
+..+|..+..+|.+.|++++|...|+.+.+...... ..|..+...|.+.|++++|...|+++.+.. |.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~ 667 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA---------LALLLLADAYAVMKNYAKAITSLKRALELK---PD 667 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC
Confidence 455566666666666666666666666654322111 134556666666666666666666665443 22
Q ss_pred cceehhhhHHHHHHHH---------hhhhHHhhhh----cchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceec
Q 002761 399 RAMILSRKYRTLVSSW---------IEPLQEEAEL----GYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIY 465 (883)
Q Consensus 399 ~~~~~~~~y~~Ll~~~---------~~~~~~m~~~----g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty 465 (883)
+... +..+.... ...+..+... ......++..+...|..++|..++..+.... |+...+
T Consensus 668 ~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~-- 739 (899)
T TIGR02917 668 NTEA----QIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA-- 739 (899)
T ss_pred CHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH--
Confidence 2211 11111111 1111111100 0011234444555677777777776554432 333222
Q ss_pred cchHHHHHHHHHHhhchHHHHHHHHHHhcCCCccccCCChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHHHh
Q 002761 466 SNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELD 545 (883)
Q Consensus 466 ~~li~~~l~~~c~~g~~~~A~~Ll~eM~~~G~~~lls~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~ef~ 545 (883)
..+...+++.|+..+|.+.++.+.+.... +...+..+-..+.+.|+ +.++...+..+.
T Consensus 740 ----~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~la~~~~~~g~-------------~~~A~~~~~~~~ 797 (899)
T TIGR02917 740 ----IKLHRALLASGNTAEAVKTLEAWLKTHPN-----DAVLRTALAELYLAQKD-------------YDKAIKHYRTVV 797 (899)
T ss_pred ----HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCcC-------------HHHHHHHHHHHH
Confidence 13444566667777777777766543321 33344444344444333 555555555555
Q ss_pred hCC
Q 002761 546 AQG 548 (883)
Q Consensus 546 ~~g 548 (883)
...
T Consensus 798 ~~~ 800 (899)
T TIGR02917 798 KKA 800 (899)
T ss_pred HhC
Confidence 554
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=6.4e-17 Score=183.84 Aligned_cols=300 Identities=17% Similarity=0.097 Sum_probs=246.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL---HETLIALARLFGSKGLA 155 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd---~~ty~~LI~a~~~~g~~ 155 (883)
+...|+++.|...|.++.+.+ +.+..+|..+...|.+.|++++|..+++.+...+..++ ..++..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 456789999999999999874 34567899999999999999999999999987643322 35688899999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHH
Q 002761 156 TKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD----EIYDLMIAEDCKAGDHSNALEIA 231 (883)
Q Consensus 156 ~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~----~tyn~LI~a~~k~g~~eeA~~lf 231 (883)
+.|..+|.++.+.......+++.++..|.+.|++++|..+|+.+.+.+..+.. ..|..+...+.+.|++++|...|
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999864333338999999999999999999999999886533322 34667888889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761 232 YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311 (883)
Q Consensus 232 ~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~ 311 (883)
+++.+.. +.+...+..+...|.+.|++++|.++|+++. ..+-.....+++.++.+|++.| +.++|...|+++.+
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g---~~~~A~~~l~~~~~ 277 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVE--EQDPEYLSEVLPKLMECYQALG---DEAEGLEFLRRALE 277 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHChhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Confidence 9998764 2346688889999999999999999999988 3221222467899999999999 66699999999987
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHH---cCCHHHHHHHHHH
Q 002761 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR---EGRIIELLEALEA 388 (883)
Q Consensus 312 ~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~---~G~~~eA~~lf~~ 388 (883)
..|+...+..+...+.+.|++++|..+|+.+.+.. |... +++.++..++. .|+..+|+.+|++
T Consensus 278 ----~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~--------~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 278 ----EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLR--------GFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred ----hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHH--------HHHHHHHHhhhccCCccchhHHHHHHH
Confidence 45887778889999999999999999999887643 2222 46778888775 5699999999999
Q ss_pred HhhCCCCCCCc
Q 002761 389 MAKDNQPVPPR 399 (883)
Q Consensus 389 M~~~Gi~i~p~ 399 (883)
|.++++...|+
T Consensus 344 ~~~~~~~~~p~ 354 (389)
T PRK11788 344 LVGEQLKRKPR 354 (389)
T ss_pred HHHHHHhCCCC
Confidence 99999865554
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=2.7e-16 Score=178.72 Aligned_cols=311 Identities=13% Similarity=0.067 Sum_probs=245.0
Q ss_pred HHHHHhCCChhhHHHHHHc--CCCCChh-HHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---
Q 002761 30 MSSPEKKTRRKKQQRRQQK--HGDSLLS-TNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPG--- 103 (883)
Q Consensus 30 I~~~~k~g~~~~A~~M~~~--gv~Pd~~-ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd--- 103 (883)
...+...|.+++|...+.. ...|+.. ++..+... +.+.|+++.|..+++.+...+..++
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~---------------~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 106 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNL---------------FRRRGEVDRAIRIHQNLLSRPDLTREQR 106 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHH---------------HHHcCcHHHHHHHHHHHhcCCCCCHHHH
Confidence 3345677899999666654 2345432 33333333 4556888999999999987542222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChh----H-HHHH
Q 002761 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR----Q-AWLI 178 (883)
Q Consensus 104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pd----v-tyn~ 178 (883)
...|+.+...|.+.|++++|..+|.++... -.++..+++.++..+.+.|++++|.+.+..+.+.+..+. . .|..
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 356889999999999999999999999875 335678899999999999999999999999998765432 2 4567
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002761 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258 (883)
Q Consensus 179 LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~ 258 (883)
+...|.+.|++++|..+|+++.+.. +.+..++..+...|.+.|++++|.++|+++...+......+++.+..+|++.|+
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 8888999999999999999998743 234568888999999999999999999999976433335678999999999999
Q ss_pred HHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH---cCC
Q 002761 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK---YCA 335 (883)
Q Consensus 259 ~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k---~G~ 335 (883)
+++|...|+.+.+ . .|+...++.+...|.+.| +.++|..+|.++.+ ..|+..+++.++..+.. .|+
T Consensus 265 ~~~A~~~l~~~~~--~--~p~~~~~~~la~~~~~~g---~~~~A~~~l~~~l~----~~P~~~~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 265 EAEGLEFLRRALE--E--YPGADLLLALAQLLEEQE---GPEAAQALLREQLR----RHPSLRGFHRLLDYHLAEAEEGR 333 (389)
T ss_pred HHHHHHHHHHHHH--h--CCCchHHHHHHHHHHHhC---CHHHHHHHHHHHHH----hCcCHHHHHHHHHHhhhccCCcc
Confidence 9999999999883 2 577777799999999999 66699999999986 47999999999988775 568
Q ss_pred HHHHHHHHHHHHhCCCCCccccccCCCCcHHHH
Q 002761 336 VTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 368 (883)
Q Consensus 336 ~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~ 368 (883)
.+++..+|+.|.+.++.+...+....||.+...
T Consensus 334 ~~~a~~~~~~~~~~~~~~~p~~~c~~cg~~~~~ 366 (389)
T PRK11788 334 AKESLLLLRDLVGEQLKRKPRYRCRNCGFTART 366 (389)
T ss_pred chhHHHHHHHHHHHHHhCCCCEECCCCCCCCcc
Confidence 999999999999876655544444455553333
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.58 E-value=4.4e-11 Score=145.37 Aligned_cols=328 Identities=11% Similarity=-0.004 Sum_probs=246.9
Q ss_pred HHHHHHHhCCChhhHHHHHHc--CCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 002761 28 SAMSSPEKKTRRKKQQRRQQK--HGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPR 105 (883)
Q Consensus 28 ~LI~~~~k~g~~~~A~~M~~~--gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~ 105 (883)
-++..+.+.|++.+|..+.+. ...|+..-...+ ........|+++.|...|+++.... +.+..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~--------------l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~ 111 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR--------------WVISPLASSQPDAVLQVVNKLLAVN-VCQPE 111 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH--------------HhhhHhhcCCHHHHHHHHHHHHHhC-CCChH
Confidence 345666677777777555442 222322211111 1112345799999999999998764 34567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 002761 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELV 184 (883)
Q Consensus 106 tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~ 184 (883)
.|..+...+.+.|++++|...|++.... .| +...+..+..++...|++++|...+..+......+...+..+. .+.
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~ 188 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFL 188 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHH
Confidence 7888889999999999999999998764 44 4667888899999999999999999988877655444443343 488
Q ss_pred HCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH---
Q 002761 185 RNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--- 261 (883)
Q Consensus 185 k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~--- 261 (883)
+.|++++|..+++.+......++...+..+..++.+.|++++|...|+...... +.+...++.+-..|.+.|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHH
Confidence 899999999999998775433445566667788999999999999999998764 3357788889999999999986
Q ss_pred -HHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 002761 262 -AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEA 339 (883)
Q Consensus 262 -A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~~k~G~~eeA 339 (883)
|...|+.... . -+.+...+..+...|.+.| +.++|+..+++... ..|+ ...+..+..+|.+.|++++|
T Consensus 268 ~A~~~~~~Al~--l-~P~~~~a~~~lg~~l~~~g---~~~eA~~~l~~al~----l~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 268 QAAEHWRHALQ--F-NSDNVRIVTLYADALIRTG---QNEKAIPLLQQSLA----THPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred HHHHHHHHHHh--h-CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 7999998772 1 1345678999999999999 66699999999886 4565 45566777899999999999
Q ss_pred HHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761 340 IRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393 (883)
Q Consensus 340 ~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G 393 (883)
...|+.+......... .+..+..+|...|+.++|...|++..+..
T Consensus 338 ~~~l~~al~~~P~~~~---------~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 338 SDEFVQLAREKGVTSK---------WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHhCccchH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998864332211 23445678899999999999999987764
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.2e-10 Score=126.60 Aligned_cols=321 Identities=13% Similarity=0.137 Sum_probs=241.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCChhhH----HHHHHcCCCCChhHHHHHHHHHH--ccCChHHHHH--HH-----
Q 002761 11 FISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQ----QRRQQKHGDSLLSTNGSVVSAAE--QGLRLIFMEE--LM----- 77 (883)
Q Consensus 11 ~~~~~~~p~~pd~~syn~LI~~~~k~g~~~~A----~~M~~~gv~Pd~~ty~~ll~a~~--~~~~~~~~~~--L~----- 77 (883)
|.+.+... +-.+.+=|.|+...+. |.+.++ ..|...|+..+...--.|+.-.+ ......|+.. ..
T Consensus 105 F~P~~l~~-~~~V~~E~nL~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~ 182 (625)
T KOG4422|consen 105 FRPRHLAD-PLQVETENNLLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNF 182 (625)
T ss_pred cCchhcCC-chhhcchhHHHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccc
Confidence 44444444 4556777888776665 455555 78888888888777666665543 2333333322 11
Q ss_pred -----HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002761 78 -----QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSK 152 (883)
Q Consensus 78 -----~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~ 152 (883)
.-.|.|.+.+ ++-+.. +.+..||.+||.|+|+--..+.|.+++++-.....+.+..+||.+|.+-.
T Consensus 183 ~E~S~~sWK~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-- 253 (625)
T KOG4422|consen 183 GEDSTSSWKSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-- 253 (625)
T ss_pred ccccccccccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--
Confidence 1223344333 333333 45778999999999999999999999999998888999999999998764
Q ss_pred CCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH-
Q 002761 153 GLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDA----NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSN- 226 (883)
Q Consensus 153 g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA----~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~ee- 226 (883)
+.....++.+|....+.||. |+|+++.+.++.|+++.| .+++.+|++-|+.|...+|..+|.-+++.++..+
T Consensus 254 --~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 254 --YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred --hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 34458999999999999999 999999999999988765 5677899999999999999999999999988754
Q ss_pred HHHHHHHHH----HcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC--CCCCC---HHHHHHHHHHHHHc
Q 002761 227 ALEIAYEME----AAGRMA----TTFHFNHLLSCQATCGIPEVAFATFENMEYGED--YMKPD---TETYNCVIQAYTRA 293 (883)
Q Consensus 227 A~~lf~~M~----~~G~~P----d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~--gi~pd---~~tyn~LI~ay~~~ 293 (883)
|..++.++. .+.++| |..-|.+-++.|.+..+.+.|.++..-.+.|+. -+.|+ .+-|.-+....|+.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 444444444 333444 455667788888899999999999888775322 23333 23466788888888
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002761 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349 (883)
Q Consensus 294 G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~ 349 (883)
. ..+..+..|..|+- +-+-|+..+...++.|..-.|.++---+++..++..
T Consensus 412 e---s~~~~~~~Y~~lVP--~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 412 E---SIDVTLKWYEDLVP--SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred H---HHHHHHHHHHHhcc--ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 8 56689999999987 578899999999999999999999999999888763
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.55 E-value=3.2e-11 Score=146.56 Aligned_cols=327 Identities=11% Similarity=0.058 Sum_probs=250.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 002761 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGL 154 (883)
Q Consensus 76 L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~ 154 (883)
+..+.+.|+++.|+.++......... +...+..+..++...|++++|...|+++... .| +...+..+...+.+.|+
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCC
Confidence 34566789999999999999876533 3445555667777899999999999999875 44 45678888889999999
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234 (883)
Q Consensus 155 ~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M 234 (883)
++.|...+.++.+........+..+...|...|++++|...++.+...... +...+..+ ..+...|++++|..+++.+
T Consensus 126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 999999999999875433338889999999999999999999988764322 22333333 3488899999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHhHhcc
Q 002761 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV-QDVAELLGMMVEDH 313 (883)
Q Consensus 235 ~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~-~eAl~lf~~M~~~~ 313 (883)
....-.++...+..+...|.+.|++++|...|+... ... +.+...++.+-..|...|+++.+ .+|...|++..+
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al--~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-- 278 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL--ARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-- 278 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH--hcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--
Confidence 877544555666677788999999999999999988 322 44677888899999999965411 148999999986
Q ss_pred CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761 314 KRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392 (883)
Q Consensus 314 ~gi~Pd-~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~ 392 (883)
+.|+ ...+..+...+...|++++|...++.......... ..+..+...|.+.|++++|+..|+++...
T Consensus 279 --l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~---------~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 279 --FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP---------YVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4565 56788888999999999999999999987543322 24667889999999999999999999876
Q ss_pred CCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHh
Q 002761 393 NQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRR 451 (883)
Q Consensus 393 Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m 451 (883)
+ |.+... +. .++..+...|..++|...++..
T Consensus 348 ~---P~~~~~----~~---------------------~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 348 K---GVTSKW----NR---------------------YAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred C---ccchHH----HH---------------------HHHHHHHHCCCHHHHHHHHHHH
Confidence 4 332211 00 1123334488888888888754
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.50 E-value=6.2e-10 Score=134.84 Aligned_cols=367 Identities=11% Similarity=-0.010 Sum_probs=262.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHc--CCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 002761 26 IRSAMSSPEKKTRRKKQQRRQQK--HGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPG 103 (883)
Q Consensus 26 yn~LI~~~~k~g~~~~A~~M~~~--gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd 103 (883)
+...-..|.+.|++++|...... .+.|+...|..+-. .|.+.|+++.|...+....+.. +.+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~---------------~~~~l~~~~~Ai~~~~~al~l~-p~~ 193 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAA---------------CHNALGDWEKVVEDTTAALELD-PDY 193 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHH---------------HHHHhCCHHHHHHHHHHHHHcC-CCC
Confidence 34556788899999999776665 45676554443322 3556688899999999988764 345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C---------------------------CC----CHHHHHHH------
Q 002761 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAG-V---------------------------RP----LHETLIAL------ 145 (883)
Q Consensus 104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~G-i---------------------------~P----d~~ty~~L------ 145 (883)
...|..+-.+|...|++++|+.-|......+ . .| ........
T Consensus 194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 273 (615)
T TIGR00990 194 SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRP 273 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC
Confidence 6788889999999999999987664432111 0 01 00000000
Q ss_pred ---------------------HHHH------HhcCCHHHHHHHHHHHHHcC-CChhH--HHHHHHHHHHHCCCHHHHHHH
Q 002761 146 ---------------------ARLF------GSKGLATKGLEILAAMEKIN-YDIRQ--AWLILVEELVRNKYLEDANKV 195 (883)
Q Consensus 146 ---------------------I~a~------~~~g~~~~A~~l~~~m~~~g-~~pdv--tyn~LI~~y~k~G~~eeA~~l 195 (883)
+..+ ...+.+++|...|+...+.+ ..|+. .|+.+...|...|++++|...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 274 KPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred CcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0000 12257889999999998875 34443 788888999999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC
Q 002761 196 FLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274 (883)
Q Consensus 196 f~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~ 274 (883)
|++..+. .|+ ..+|..+...+...|++++|...|+...+.. +-+..+|..+...|...|++++|...|++... .
T Consensus 354 ~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l 428 (615)
T TIGR00990 354 LSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--L 428 (615)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--c
Confidence 9998874 455 4688899999999999999999999998763 23578899999999999999999999998872 1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 002761 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353 (883)
Q Consensus 275 gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~ 353 (883)
.+.+...|..+...|.+.| +.++|+..|++..+ ..| +...|+.+-..+...|++++|...|+.........
T Consensus 429 -~P~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 429 -DPDFIFSHIQLGVTQYKEG---SIASSMATFRRCKK----NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred -CccCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 1345777888889999999 66699999999886 345 46778888889999999999999999987643221
Q ss_pred ccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHH
Q 002761 354 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIAR 433 (883)
Q Consensus 354 ~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~ 433 (883)
...+. .....++..+..|...|++++|..++++..... |.+... ...+++
T Consensus 501 ~~~~~--~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~---p~~~~a-------------------------~~~la~ 550 (615)
T TIGR00990 501 KPMYM--NVLPLINKALALFQWKQDFIEAENLCEKALIID---PECDIA-------------------------VATMAQ 550 (615)
T ss_pred ccccc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCcHHH-------------------------HHHHHH
Confidence 11100 000012333334555799999999999987654 222211 123556
Q ss_pred HHHhCCcHHHHHHHHHHh
Q 002761 434 YISEGGLTGERKRWVPRR 451 (883)
Q Consensus 434 ~~~~~G~~~eA~~l~~~m 451 (883)
.+...|..++|..+|+..
T Consensus 551 ~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 551 LLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 666799999999999854
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2.8e-10 Score=123.81 Aligned_cols=389 Identities=11% Similarity=0.049 Sum_probs=241.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHCC------------------
Q 002761 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYT---LNGDHEGAMHSLKRELSAG------------------ 134 (883)
Q Consensus 76 L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~---~~g~~~~A~~lf~~M~~~G------------------ 134 (883)
|......|.+..+.-+++.|...|+..+...--.|+..-+ ...-+-.-.+-|-.|...|
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E 201 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE 201 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh
Confidence 3445566888899999999999887666554444433222 1221212223333343222
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 002761 135 -VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212 (883)
Q Consensus 135 -i~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn 212 (883)
.+-+..||.++|.++|+-...+.|.+++.+........+. ++|.+|.+-+-. ...++..+|.+..++||..|||
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHH
Confidence 2346678999999999999999999999988877767777 999988764432 2278899999999999999999
Q ss_pred HHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHchh--CCCCCCC----CHH
Q 002761 213 LMIAEDCKAGDHSN----ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV-AFATFENMEY--GEDYMKP----DTE 281 (883)
Q Consensus 213 ~LI~a~~k~g~~ee----A~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~-A~~lf~~M~~--g~~gi~p----d~~ 281 (883)
+++++.++.|+++. |.+++.+|++-|+.|...+|..+|.-+++-++..+ |..+..++.. ..+.++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998765 56788899999999999999999999988887643 4444444432 0233444 445
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccc
Q 002761 282 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV---KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358 (883)
Q Consensus 282 tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~---~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~ 358 (883)
-|.+-+..|.+..+.+.+..+..+++.=... .-+.|+. +-|.-+....|.....+.-...|..|.-.-
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~-~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~-------- 428 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNW-KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA-------- 428 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce--------
Confidence 5666677777777444333333333322110 1123332 235667778888888888888888886321
Q ss_pred cCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHH-----HHH
Q 002761 359 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDY-----IAR 433 (883)
Q Consensus 359 ~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~-----l~~ 433 (883)
|++.+.+-..++.+..-.|+++-.-+++..|+..|.. +++.+...+. ..+......|+. +..
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght-----------~r~~l~eeil--~~L~~~k~hp~tp~r~Ql~~ 495 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT-----------FRSDLREEIL--MLLARDKLHPLTPEREQLQV 495 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh-----------hhHHHHHHHH--HHHhcCCCCCCChHHHHHHH
Confidence 2233334567788888889999999999999888752 4443333211 111111111110 000
Q ss_pred HH-HhCCcHHHHHHHH-HHhcCCCCCCCccceeccchHHHHHHHHHHhhchHHHHHHHHHHhcCCCc
Q 002761 434 YI-SEGGLTGERKRWV-PRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPA 498 (883)
Q Consensus 434 ~~-~~~G~~~eA~~l~-~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~~~A~~Ll~eM~~~G~~ 498 (883)
.. ..+-.+.++.+.- .+|++..+.| +.++.+..-+-|.|+.++|.++|.....+|..
T Consensus 496 ~~ak~aad~~e~~e~~~~R~r~~~~~~--------t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 496 AFAKCAADIKEAYESQPIRQRAQDWPA--------TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhccCCh--------hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 00 0011122222222 2343333333 33456666688999999999999977555544
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.48 E-value=2.6e-09 Score=138.13 Aligned_cols=400 Identities=11% Similarity=0.034 Sum_probs=240.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHH------------H
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLI------------A 144 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~------------~ 144 (883)
.+...|++++|...|++..+.. +-+...+..|-..|.+.|++++|...|++.....-.. +...+. .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 3667899999999999998764 3478889999999999999999999999987653221 111121 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH--------
Q 002761 145 LARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT-DEIYDLMI-------- 215 (883)
Q Consensus 145 LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI-------- 215 (883)
+-..+.+.|++++|...|.++.+........+..|-..|...|++++|.+.|++..+.. |+ ...+..+.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCH
Confidence 23456789999999999999998754333377888999999999999999999988632 33 23333332
Q ss_pred ----------------------------------HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 002761 216 ----------------------------------AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261 (883)
Q Consensus 216 ----------------------------------~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~ 261 (883)
..+...|++++|.+.|++..+.... +...+..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 2344567777777777777765322 45566677777888888888
Q ss_pred HHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH---------HHHHHHHHHH
Q 002761 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT---------YALLVECFTK 332 (883)
Q Consensus 262 A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~T---------y~~LI~a~~k 332 (883)
|...|+++.. .. +.+...+..+...+...+ +.++|+..++.+.. ....++... +..+...+..
T Consensus 514 A~~~l~~al~--~~-P~~~~~~~a~al~l~~~~---~~~~Al~~l~~l~~--~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 514 ADALMRRLAQ--QK-PNDPEQVYAYGLYLSGSD---RDRAALAHLNTLPR--AQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHHHHHHHHH--cC-CCCHHHHHHHHHHHHhCC---CHHHHHHHHHhCCc--hhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888887652 11 123333333333445555 44566666665532 111122111 1223445666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHH
Q 002761 333 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS 412 (883)
Q Consensus 333 ~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~ 412 (883)
.|+.++|..+++. .+..+ ..+..+...|.+.|+.++|+..|++..+.. |.+... +..+..
T Consensus 586 ~G~~~eA~~~l~~---~p~~~----------~~~~~La~~~~~~g~~~~A~~~y~~al~~~---P~~~~a----~~~la~ 645 (1157)
T PRK11447 586 SGKEAEAEALLRQ---QPPST----------RIDLTLADWAQQRGDYAAARAAYQRVLTRE---PGNADA----RLGLIE 645 (1157)
T ss_pred CCCHHHHHHHHHh---CCCCc----------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH----HHHHHH
Confidence 6777777766651 11111 124456667777777777777777776653 333321 222211
Q ss_pred H---------HhhhhHHhhhh----cchHHHHHHHHHhCCcHHHHHHHHHHhcCCC-CCCCccceeccchHHHHHHHHHH
Q 002761 413 S---------WIEPLQEEAEL----GYEIDYIARYISEGGLTGERKRWVPRRGKTP-LDPDAVGFIYSNPMETSFKQRCL 478 (883)
Q Consensus 413 ~---------~~~~~~~m~~~----g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g-~~Pd~~~~ty~~li~~~l~~~c~ 478 (883)
. +.+.+...... ......++......|+.++|..+++...... -.|..... ..+...+...+-.
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~--a~~~~~~a~~~~~ 723 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMES--ALVLRDAARFEAQ 723 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhh--HHHHHHHHHHHHH
Confidence 1 11111111110 0111235566667999999999999765432 22211000 0000111222445
Q ss_pred hhchHHHHHHHH-HHhcCCCccccCCChhHHHHH
Q 002761 479 EDGKKYHRKLLR-TLQNEGPAVLGDVSESDYVRV 511 (883)
Q Consensus 479 ~g~~~~A~~Ll~-eM~~~G~~~lls~~~~~~~~v 511 (883)
.|+.++|..+++ .|...|+.|...++..++..+
T Consensus 724 ~G~~~~A~~~y~~Al~~~~~~~~~p~~~~~~~~l 757 (1157)
T PRK11447 724 TGQPQQALETYKDAMVASGITPTRPQDNDTFTRL 757 (1157)
T ss_pred cCCHHHHHHHHHHHHhhcCCCCCCCCCchHHHHH
Confidence 678899999998 556667766443444555543
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.47 E-value=8.8e-10 Score=142.49 Aligned_cols=386 Identities=11% Similarity=0.055 Sum_probs=202.3
Q ss_pred CCHHHHHHHHHHHHhCCChhhHHHHHHcC--CCCChh---HHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHH
Q 002761 21 TGVVPIRSAMSSPEKKTRRKKQQRRQQKH--GDSLLS---TNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDM 95 (883)
Q Consensus 21 pd~~syn~LI~~~~k~g~~~~A~~M~~~g--v~Pd~~---ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M 95 (883)
.+...+..+-..|.+.|++++|...++.. ..|+.. .+..++.... -......-..+.+.|++++|...|++.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~---~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR---YWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh---HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 35556666666777777777775444431 223221 1222221100 000011112356789999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----
Q 002761 96 IAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD---- 171 (883)
Q Consensus 96 ~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~---- 171 (883)
.+.. +.+...+..+-..|...|++++|.+.|++..... +.+...+..+...+. .++.++|..++..+......
T Consensus 378 l~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 378 RQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH
Confidence 8764 3456778888889999999999999999887642 223444544544443 33455555555443221100
Q ss_pred ----hhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 002761 172 ----IRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH 245 (883)
Q Consensus 172 ----pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~t 245 (883)
... .+..+...|...|++++|...|++..+. .|+ ...+..+...|.+.|++++|...|+...+..-. +...
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~ 531 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQ 531 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHH
Confidence 001 2344455555566666666666655542 232 244445555555666666666666555543211 2222
Q ss_pred HHH--------------------------------------------HHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHH
Q 002761 246 FNH--------------------------------------------LLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 281 (883)
Q Consensus 246 yn~--------------------------------------------LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~ 281 (883)
+.. +...|...|+.++|..+++.- +.+..
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-------p~~~~ 604 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-------PPSTR 604 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-------CCCch
Confidence 222 233344455555555554411 22334
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccC
Q 002761 282 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG 360 (883)
Q Consensus 282 tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~ 360 (883)
.+..+...|.+.| +.++|+..|++..+ ..| +...+..+...|...|++++|...++.........
T Consensus 605 ~~~~La~~~~~~g---~~~~A~~~y~~al~----~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~------- 670 (1157)
T PRK11447 605 IDLTLADWAQQRG---DYAAARAAYQRVLT----REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS------- 670 (1157)
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC-------
Confidence 4455555666666 44466666666654 223 34555556666666666666666666554321111
Q ss_pred CCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCc
Q 002761 361 NFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGL 440 (883)
Q Consensus 361 ~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~ 440 (883)
..++..+...+.+.|++++|.++|++.....-..|+ .. .+. .....+++.....|.
T Consensus 671 --~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~-~~-----~~a----------------~~~~~~a~~~~~~G~ 726 (1157)
T PRK11447 671 --LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP-SM-----ESA----------------LVLRDAARFEAQTGQ 726 (1157)
T ss_pred --hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc-ch-----hhH----------------HHHHHHHHHHHHcCC
Confidence 112344555566666666666666666543311111 00 000 011123566667999
Q ss_pred HHHHHHHHHH-hcCCCCCCCc
Q 002761 441 TGERKRWVPR-RGKTPLDPDA 460 (883)
Q Consensus 441 ~~eA~~l~~~-m~~~g~~Pd~ 460 (883)
.++|...+.. |...|+.|..
T Consensus 727 ~~~A~~~y~~Al~~~~~~~~~ 747 (1157)
T PRK11447 727 PQQALETYKDAMVASGITPTR 747 (1157)
T ss_pred HHHHHHHHHHHHhhcCCCCCC
Confidence 9999999884 4455666543
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.45 E-value=2.1e-09 Score=130.24 Aligned_cols=364 Identities=16% Similarity=0.124 Sum_probs=261.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLAT 156 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~ 156 (883)
.+.+.|+++.|...|.+.... .|+...|..+-.+|.+.|++++|++.+...... .| +...|..+-.+|...|+++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHH
Confidence 478899999999999998864 688889999999999999999999999998775 45 4567888999999999999
Q ss_pred HHHHHHHHHHHcC-CC---------------------------hh-H-HHHHH---------------------------
Q 002761 157 KGLEILAAMEKIN-YD---------------------------IR-Q-AWLIL--------------------------- 179 (883)
Q Consensus 157 ~A~~l~~~m~~~g-~~---------------------------pd-v-tyn~L--------------------------- 179 (883)
+|..-|......+ +. |. . .+..+
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 9987664433211 00 00 0 00000
Q ss_pred ---HHHH------HHCCCHHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHH
Q 002761 180 ---VEEL------VRNKYLEDANKVFLRGAKGG-LRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT-TFHFN 247 (883)
Q Consensus 180 ---I~~y------~k~G~~eeA~~lf~~M~~~g-i~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd-~~tyn 247 (883)
+..+ ...+++++|...|+.....+ ..|+ ...|+.+-..+...|++++|...|+..... .|+ ...|.
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~ 369 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYI 369 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHH
Confidence 0000 12357889999999988754 2343 467888888889999999999999998875 344 56788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHH
Q 002761 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALL 326 (883)
Q Consensus 248 ~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~L 326 (883)
.+...|...|++++|...|+.... . -+.+...|..+...|...| +.++|+..|.+..+ +.|+ ...+..+
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~--~-~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~kal~----l~P~~~~~~~~l 439 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALK--L-NSEDPDIYYHRAQLHFIKG---EFAQAGKDYQKSID----LDPDFIFSHIQL 439 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----cCccCHHHHHHH
Confidence 888999999999999999998772 2 1345788888999999999 66699999999986 4454 5666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhh
Q 002761 327 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRK 406 (883)
Q Consensus 327 I~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~ 406 (883)
-.++.+.|++++|...|+...+... ..++.|+.+...|...|++++|+..|++..+..- ....+.. .
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~P---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p--~~~~~~~--~ 506 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFP---------EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK--ETKPMYM--N 506 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--ccccccc--c
Confidence 7889999999999999999876432 1233688899999999999999999999876541 1111110 0
Q ss_pred HHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHHHhhchHHHH
Q 002761 407 YRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHR 486 (883)
Q Consensus 407 y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~~~A~ 486 (883)
...++..+ ...+...|.+++|..+++.... +.|+... .+ ..+...+-+.|+.++|.
T Consensus 507 ~~~l~~~a-----------------~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~-a~----~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 507 VLPLINKA-----------------LALFQWKQDFIEAENLCEKALI--IDPECDI-AV----ATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHH-----------------HHHHHHhhhHHHHHHHHHHHHh--cCCCcHH-HH----HHHHHHHHHccCHHHHH
Confidence 00111111 0111226889999999986433 3465422 11 13444456678899999
Q ss_pred HHHHHHhc
Q 002761 487 KLLRTLQN 494 (883)
Q Consensus 487 ~Ll~eM~~ 494 (883)
++|++..+
T Consensus 563 ~~~e~A~~ 570 (615)
T TIGR00990 563 KLFERAAE 570 (615)
T ss_pred HHHHHHHH
Confidence 99986643
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.30 E-value=3.1e-08 Score=122.84 Aligned_cols=333 Identities=13% Similarity=0.038 Sum_probs=179.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002761 82 NRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161 (883)
Q Consensus 82 ~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l 161 (883)
.|+++.|..+|++..+.. +.+...+..+...+...|++++|+..+++.... .+.+.. +..+..++...|+.++|...
T Consensus 62 ~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 62 LKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence 355555555555554432 223444455555555555555555555555443 112233 55555555555555555555
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHCCCHH----------------------------------------------HHHHH
Q 002761 162 LAAMEKINYDIRQAWLILVEELVRNKYLE----------------------------------------------DANKV 195 (883)
Q Consensus 162 ~~~m~~~g~~pdvtyn~LI~~y~k~G~~e----------------------------------------------eA~~l 195 (883)
+.++.+........+..+...+.+.|..+ +|...
T Consensus 139 l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 139 MTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 55555543332223334444444444444 44445
Q ss_pred HHHHHhC-CCCCCHH-HH----HHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002761 196 FLRGAKG-GLRATDE-IY----DLMIAEDCKAGDHSNALEIAYEMEAAGRM-ATTFHFNHLLSCQATCGIPEVAFATFEN 268 (883)
Q Consensus 196 f~~M~~~-gi~pd~~-ty----n~LI~a~~k~g~~eeA~~lf~~M~~~G~~-Pd~~tyn~LI~~y~k~G~~e~A~~lf~~ 268 (883)
++.+.+. .-.|+.. .+ ...+.++...|++++|...|+.+.+.+-. |+..- -.+...|...|++++|..+|+.
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHH
Confidence 5555432 1112211 11 11133445667778888888887776532 33211 1245577777888888888877
Q ss_pred chhCCCCC-CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC---------CCCCCH---HHHHHHHHHHHHcCC
Q 002761 269 MEYGEDYM-KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK---------RLQPNV---KTYALLVECFTKYCA 335 (883)
Q Consensus 269 M~~g~~gi-~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~---------gi~Pd~---~Ty~~LI~a~~k~G~ 335 (883)
+....... ......+..+..++...| +.++|..++..+..... .-.|+. ..+..+...+...|+
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g---~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESE---NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcc---cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 65211110 011344555666777777 55577777777765100 011231 233445566777788
Q ss_pred HHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHh
Q 002761 336 VTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415 (883)
Q Consensus 336 ~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~ 415 (883)
+++|+.+++.+........ ..+..+...+...|++++|++.+++..... |.+..+ +.
T Consensus 375 ~~eA~~~l~~al~~~P~n~---------~l~~~lA~l~~~~g~~~~A~~~l~~al~l~---Pd~~~l----~~------- 431 (765)
T PRK10049 375 LPQAEMRARELAYNAPGNQ---------GLRIDYASVLQARGWPRAAENELKKAEVLE---PRNINL----EV------- 431 (765)
T ss_pred HHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCChHH----HH-------
Confidence 8888888877765332221 145677777778888888888888776654 443321 11
Q ss_pred hhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCc
Q 002761 416 EPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDA 460 (883)
Q Consensus 416 ~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~ 460 (883)
..+......|..++|+.+++.+.+ ..|+.
T Consensus 432 --------------~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~ 460 (765)
T PRK10049 432 --------------EQAWTALDLQEWRQMDVLTDDVVA--REPQD 460 (765)
T ss_pred --------------HHHHHHHHhCCHHHHHHHHHHHHH--hCCCC
Confidence 122334447899999999986644 44554
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.26 E-value=2.3e-09 Score=121.16 Aligned_cols=346 Identities=11% Similarity=0.092 Sum_probs=270.2
Q ss_pred CCHHHHHHHHHHHHhCCChhhHHHHHHcC--CCCCh-hHHHHHHHHHHccCChHHHHHHH-------------------H
Q 002761 21 TGVVPIRSAMSSPEKKTRRKKQQRRQQKH--GDSLL-STNGSVVSAAEQGLRLIFMEELM-------------------Q 78 (883)
Q Consensus 21 pd~~syn~LI~~~~k~g~~~~A~~M~~~g--v~Pd~-~ty~~ll~a~~~~~~~~~~~~L~-------------------~ 78 (883)
--.-+|..+-+.+-..|.+++|....+.+ .+|+- -.|..+-.++...++...+...+ -
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 34567888999999999999996666653 44533 33555656666665543332211 1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPG-PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL-HETLIALARLFGSKGLAT 156 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd-~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd-~~ty~~LI~a~~~~g~~~ 156 (883)
+...|++.+|..-+-+..+. .|. .+.|+.|-..+-..|++-.|+.-|.+... +.|+ ...|..|-..|...+.++
T Consensus 194 lka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcch
Confidence 33457777777777666554 343 46799999999999999999999998765 4565 457888889999999999
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761 157 KGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEME 235 (883)
Q Consensus 157 ~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~ 235 (883)
.|...+.+........-++|..|-..|-..|.++-|...|++..+ +.|+- ..||.|-.++-..|++.+|.+.+....
T Consensus 270 ~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 999999887765433334888888899999999999999999887 45765 799999999999999999999999888
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314 (883)
Q Consensus 236 ~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd-~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~ 314 (883)
... .-.....|.|-+.|...|.+++|.++|....+ +.|. ...+|.|...|-+.| ...+|+..+++.++
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~----v~p~~aaa~nNLa~i~kqqg---nl~~Ai~~Ykealr--- 416 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE----VFPEFAAAHNNLASIYKQQG---NLDDAIMCYKEALR--- 416 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh----hChhhhhhhhhHHHHHHhcc---cHHHHHHHHHHHHh---
Confidence 753 22456778899999999999999999998662 3444 467899999999999 55599999999875
Q ss_pred CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761 315 RLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393 (883)
Q Consensus 315 gi~Pd~-~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G 393 (883)
++|+- ..|+.+-..|-..|+++.|.+.+...... .|+.. +..+.|-..|-.+|++.+|+.-|++-+...
T Consensus 417 -I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~A-------eAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 417 -IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFA-------EAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred -cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHH-------HHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 88984 57888888999999999999999887653 33332 246889999999999999999999987664
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.23 E-value=9e-09 Score=116.43 Aligned_cols=359 Identities=14% Similarity=0.098 Sum_probs=253.7
Q ss_pred hhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002761 54 LSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA 133 (883)
Q Consensus 54 ~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~ 133 (883)
..+|+.+-+.+... |+++.|+.+++.+.+.. +-.+..|..+-.++...|+.+.|...|.+..+
T Consensus 116 ae~ysn~aN~~ker---------------g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq- 178 (966)
T KOG4626|consen 116 AEAYSNLANILKER---------------GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ- 178 (966)
T ss_pred HHHHHHHHHHHHHh---------------chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-
Confidence 34677777776555 67799999999998764 33577899999999999999999999988765
Q ss_pred CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHH
Q 002761 134 GVRPLHETLIALA-RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIY 211 (883)
Q Consensus 134 Gi~Pd~~ty~~LI-~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~ty 211 (883)
+.|+.+...+-+ ..+-..|++.+|...+-+.++.....-++|+.|-..+-..|++..|..-|.+... +.|+- -.|
T Consensus 179 -lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAY 255 (966)
T KOG4626|consen 179 -LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAY 255 (966)
T ss_pred -cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHH
Confidence 567666544333 3333468899999988888876544445899999899999999999999998876 55664 678
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC-HHHHHHHHHH
Q 002761 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMAT-TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQA 289 (883)
Q Consensus 212 n~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd-~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd-~~tyn~LI~a 289 (883)
-.|-..|...+.+++|...+...... .|+ .++|..|-..|-..|.++.|...+++... +.|+ ...||.|..+
T Consensus 256 iNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~----~~P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 256 INLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE----LQPNFPDAYNNLANA 329 (966)
T ss_pred hhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh----cCCCchHHHhHHHHH
Confidence 88888899999999998888776654 444 56677777788888999999988887662 2444 4678888889
Q ss_pred HHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHH
Q 002761 290 YTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 368 (883)
Q Consensus 290 y~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~ 368 (883)
+-..| ++.+|.+.+.+... +.|+ .-..+.|-..|...|.+++|..+|.........-. ...|.
T Consensus 330 Lkd~G---~V~ea~~cYnkaL~----l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a---------aa~nN 393 (966)
T KOG4626|consen 330 LKDKG---SVTEAVDCYNKALR----LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA---------AAHNN 393 (966)
T ss_pred HHhcc---chHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh---------hhhhh
Confidence 88888 67788888888875 5565 35667788888888999999988888765432222 24578
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcce-ehh---hhHHH--HHHHHhhhhHHhh----hhcchHHHHHHHHHhC
Q 002761 369 YLRALCREGRIIELLEALEAMAKDNQPVPPRAM-ILS---RKYRT--LVSSWIEPLQEEA----ELGYEIDYIARYISEG 438 (883)
Q Consensus 369 LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~-~~~---~~y~~--Ll~~~~~~~~~m~----~~g~~~D~l~~~~~~~ 438 (883)
|-..|-+.|++++|+.-|++..+- .|+.. .++ ..|.. -+++++..+..-. .+.-...-|+.....+
T Consensus 394 La~i~kqqgnl~~Ai~~YkealrI----~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs 469 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALRI----KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS 469 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc----CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence 888888899999998888887543 33321 111 11221 1222222211100 1111122366677889
Q ss_pred CcHHHHHHHHHHhcCCCCCCCc
Q 002761 439 GLTGERKRWVPRRGKTPLDPDA 460 (883)
Q Consensus 439 G~~~eA~~l~~~m~~~g~~Pd~ 460 (883)
|.+.+|..-++. ...++||.
T Consensus 470 Gni~~AI~sY~~--aLklkPDf 489 (966)
T KOG4626|consen 470 GNIPEAIQSYRT--ALKLKPDF 489 (966)
T ss_pred CCcHHHHHHHHH--HHccCCCC
Confidence 999999998873 23455554
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.23 E-value=1.7e-07 Score=116.39 Aligned_cols=340 Identities=9% Similarity=0.006 Sum_probs=223.3
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHc--CCCCChhH-HHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 002761 22 GVVPIRSAMSSPEKKTRRKKQQRRQQK--HGDSLLST-NGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAA 98 (883)
Q Consensus 22 d~~syn~LI~~~~k~g~~~~A~~M~~~--gv~Pd~~t-y~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~ 98 (883)
+...+..+...+.+.|++++|...++. ...|+... +..+. ..+...|++++|...+++..+.
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la---------------~~l~~~g~~~eA~~~l~~~l~~ 112 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI---------------LTLADAGQYDEALVKAKQLVSG 112 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH---------------HHHHHCCCHHHHHHHHHHHHHh
Confidence 344466666666666666666555543 12233221 11111 1345667778888888887765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH---------------------
Q 002761 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL-HETLIALARLFGSKGLAT--------------------- 156 (883)
Q Consensus 99 G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd-~~ty~~LI~a~~~~g~~~--------------------- 156 (883)
. +.+.. |..+..++...|++++|+..+++.... .|+ ...+..+..++...+..+
T Consensus 113 ~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~ 188 (765)
T PRK10049 113 A-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEA 188 (765)
T ss_pred C-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHH
Confidence 2 33444 777777777788888888888777764 333 333344444554444444
Q ss_pred -------------------------HHHHHHHHHHHc-CCChhH------HHHHHHHHHHHCCCHHHHHHHHHHHHhCCC
Q 002761 157 -------------------------KGLEILAAMEKI-NYDIRQ------AWLILVEELVRNKYLEDANKVFLRGAKGGL 204 (883)
Q Consensus 157 -------------------------~A~~l~~~m~~~-g~~pdv------tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi 204 (883)
.|...++.+.+. ...|+. .....+..+...|++++|...|+.+.+.+-
T Consensus 189 ~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~ 268 (765)
T PRK10049 189 DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ 268 (765)
T ss_pred HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Confidence 344444455432 112211 111113455677999999999999998753
Q ss_pred C-CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC-----
Q 002761 205 R-ATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA---TTFHFNHLLSCQATCGIPEVAFATFENMEYGED----- 274 (883)
Q Consensus 205 ~-pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~P---d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~----- 274 (883)
. |+. ..| +...|...|++++|..+|+.+....-.. ....+..|..++...|++++|..+++.+.....
T Consensus 269 ~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~ 346 (765)
T PRK10049 269 IIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL 346 (765)
T ss_pred CCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee
Confidence 2 332 232 5678999999999999999987653211 134566777789999999999999999883100
Q ss_pred ----CCCCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761 275 ----YMKPD---TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347 (883)
Q Consensus 275 ----gi~pd---~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~ 347 (883)
.-.|+ ...+..+...+...| +.++|+++|+++.. ...-+...+..+...+...|++++|+..++...
T Consensus 347 ~~~~~~~p~~~~~~a~~~~a~~l~~~g---~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 347 YGSPTSIPNDDWLQGQSLLSQVAKYSN---DLPQAEMRARELAY---NAPGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11233 234566777888999 66699999999986 233356677888889999999999999999998
Q ss_pred hCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcc
Q 002761 348 NYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 400 (883)
Q Consensus 348 ~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~ 400 (883)
........ .+-.+...+.+.|++++|..+++++.+.. |.+.
T Consensus 421 ~l~Pd~~~---------l~~~~a~~al~~~~~~~A~~~~~~ll~~~---Pd~~ 461 (765)
T PRK10049 421 VLEPRNIN---------LEVEQAWTALDLQEWRQMDVLTDDVVARE---PQDP 461 (765)
T ss_pred hhCCCChH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCH
Confidence 75432211 34566778999999999999999998865 5554
No 23
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=2.4e-11 Score=96.70 Aligned_cols=50 Identities=26% Similarity=0.454 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 002761 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255 (883)
Q Consensus 206 pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k 255 (883)
||+++||+||++|++.|++++|.++|++|.+.|+.||..|||+||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666654
No 24
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=3.3e-11 Score=95.90 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002761 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151 (883)
Q Consensus 102 pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~ 151 (883)
||+++||+||++|++.|++++|+++|++|.+.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.20 E-value=3e-07 Score=113.24 Aligned_cols=369 Identities=11% Similarity=0.022 Sum_probs=216.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002761 77 MQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156 (883)
Q Consensus 77 ~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~ 156 (883)
..+...|+.+.|+..+++..... .......-.+...|...|++++|+++|+++...... |...+..++..+...++.+
T Consensus 76 ~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~ 153 (822)
T PRK14574 76 QIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGG 153 (822)
T ss_pred HHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHH
Confidence 34455566666666666655100 111122222233555556666666666666554221 2444455566666666666
Q ss_pred HHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761 157 KGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEM 234 (883)
Q Consensus 157 ~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M 234 (883)
+|++.+..+.+.. |+. .+-.++..+...++..+|+..++++.+.. |+ ...+..++.++.+.|-...|.++..+-
T Consensus 154 eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 154 VVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 6666666665542 223 34333333333444444666666666532 33 344455555555555554444433311
Q ss_pred H--------------------HcC-----------------------------CCCCH-H----HHHHHHHHHHHcCCHH
Q 002761 235 E--------------------AAG-----------------------------RMATT-F----HFNHLLSCQATCGIPE 260 (883)
Q Consensus 235 ~--------------------~~G-----------------------------~~Pd~-~----tyn~LI~~y~k~G~~e 260 (883)
. +.+ -.|.. . ..--.+-++.+.|++.
T Consensus 230 p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 230 PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 1 000 00110 0 1112334567788999
Q ss_pred HHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC----CCCCHHHHHHHHHHHHHcCCH
Q 002761 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR----LQPNVKTYALLVECFTKYCAV 336 (883)
Q Consensus 261 ~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~g----i~Pd~~Ty~~LI~a~~k~G~~ 336 (883)
++.+.|+.|. ..+.+--..+--++.++|...+ +.++|..+|...... .+ ..++......|..+|...+++
T Consensus 310 ~vi~~y~~l~--~~~~~~P~y~~~a~adayl~~~---~P~kA~~l~~~~~~~-~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 310 DLIKEYEAME--AEGYKMPDYARRWAASAYIDRR---LPEKAAPILSSLYYS-DGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HHHHHHHHhh--hcCCCCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHhhc-cccccCCCcchHHHHHHHHHHHhcccH
Confidence 9999999999 6665544457778999999999 555999999998763 22 122344467899999999999
Q ss_pred HHHHHHHHHHHhCCCCCccccccC-----CCCc---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHH
Q 002761 337 TEAIRHFRALQNYEGGTKVLHNEG-----NFGD---PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYR 408 (883)
Q Consensus 337 eeA~~lf~~M~~~~~~~~~~~~~~-----~~~d---tYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~ 408 (883)
++|..+++.+.+.. |.....++ +.++ .+..++..+.-.|++.+|.+.++++.... |-|.-+
T Consensus 384 ~~A~~~l~~~~~~~--p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a---P~n~~l------ 452 (822)
T PRK14574 384 DKAYQFAVNYSEQT--PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA---PANQNL------ 452 (822)
T ss_pred HHHHHHHHHHHhcC--CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH------
Confidence 99999999998632 21111111 1222 56677888999999999999999997775 555422
Q ss_pred HHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHHHhhchHHHHHH
Q 002761 409 TLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKL 488 (883)
Q Consensus 409 ~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~~~A~~L 488 (883)
.. .++......|...+|+.+++... .+.|+.... .. +....+-..+.+..|.++
T Consensus 453 --~~-----------------~~A~v~~~Rg~p~~A~~~~k~a~--~l~P~~~~~-~~----~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 453 --RI-----------------ALASIYLARDLPRKAEQELKAVE--SLAPRSLIL-ER----AQAETAMALQEWHQMELL 506 (822)
T ss_pred --HH-----------------HHHHHHHhcCCHHHHHHHHHHHh--hhCCccHHH-HH----HHHHHHHhhhhHHHHHHH
Confidence 11 12233334899999999997443 347764221 11 333334455778888888
Q ss_pred HHHHhc
Q 002761 489 LRTLQN 494 (883)
Q Consensus 489 l~eM~~ 494 (883)
.+....
T Consensus 507 ~~~l~~ 512 (822)
T PRK14574 507 TDDVIS 512 (822)
T ss_pred HHHHHh
Confidence 876643
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.12 E-value=3.1e-07 Score=115.38 Aligned_cols=334 Identities=10% Similarity=-0.020 Sum_probs=239.3
Q ss_pred HHHhCCChhhHHHHHHcCCC------CChhHHHHHHHHHHccCChHHHHHHHHHHh----------cCChHHHHHHHHHH
Q 002761 32 SPEKKTRRKKQQRRQQKHGD------SLLSTNGSVVSAAEQGLRLIFMEELMQHAR----------NRDAPRVNDVIYDM 95 (883)
Q Consensus 32 ~~~k~g~~~~A~~M~~~gv~------Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k----------~G~~~~A~~lf~~M 95 (883)
...+.|+.++|.+++++... ++....+-++..+.+...+.....+..+.+ .|+...+....+..
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 44678889999888877443 223344467788888777555555544433 45554444444444
Q ss_pred HHC-CC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 002761 96 IAA-GL-SP--GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD 171 (883)
Q Consensus 96 ~~~-G~-~p--d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~ 171 (883)
... +. ++ +...|..+-.++.. +++.+|+..|.+.... .|+......+..++...|++++|...|+++......
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~ 541 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS 541 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 332 12 34 67788888887776 8999999988777654 477655445555667899999999999998665222
Q ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002761 172 IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250 (883)
Q Consensus 172 pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI 250 (883)
+..+..+...+.+.|++++|...|+...+.. |+. ..+..+...+...|++++|...|++..+. .|+...|..+-
T Consensus 542 -~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA 616 (987)
T PRK09782 542 -NEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARA 616 (987)
T ss_pred -cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 2356677788999999999999999998754 433 33444444555669999999999999875 46788899999
Q ss_pred HHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHH
Q 002761 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVEC 329 (883)
Q Consensus 251 ~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a 329 (883)
..+.+.|+.++|...|++... . -+.+...++.+-..+...| +.++|+..|.+..+ ..|+ ...+..+-.+
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~--l-~Pd~~~a~~nLG~aL~~~G---~~eeAi~~l~~AL~----l~P~~~~a~~nLA~a 686 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALE--L-EPNNSNYQAALGYALWDSG---DIAQSREMLERAHK----GLPDDPALIRQLAYV 686 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----hCCCCHHHHHHHHHH
Confidence 999999999999999998873 1 1345677888888999999 66699999999987 4564 5677888889
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392 (883)
Q Consensus 330 ~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~ 392 (883)
+...|++++|...|+...........+ .-..-....+..+++.|.+-+.+-...
T Consensus 687 l~~lGd~~eA~~~l~~Al~l~P~~a~i---------~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 687 NQRLDDMAATQHYARLVIDDIDNQALI---------TPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCchh---------hhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998654333222 223344555666677777666655433
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.07 E-value=1.7e-06 Score=106.73 Aligned_cols=343 Identities=11% Similarity=0.041 Sum_probs=239.4
Q ss_pred HHhCCChhhHHHHHHc--CCCCChh--HHHHHHHHHHccCChHHHHH-------------------HHHHHhcCChHHHH
Q 002761 33 PEKKTRRKKQQRRQQK--HGDSLLS--TNGSVVSAAEQGLRLIFMEE-------------------LMQHARNRDAPRVN 89 (883)
Q Consensus 33 ~~k~g~~~~A~~M~~~--gv~Pd~~--ty~~ll~a~~~~~~~~~~~~-------------------L~~~~k~G~~~~A~ 89 (883)
..+.|++..|...++. ...|+.. .+ .++..+...+....+.. ...+...|+++.|.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4567778888555554 3445531 22 44444444444332222 11466779999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002761 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169 (883)
Q Consensus 90 ~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g 169 (883)
.+|+++.+.. +-+...+..++..|...++.++|++.+.++... .|+...+-.++..+...++..+|.+.++++.+..
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999999875 345677778899999999999999999998764 6676666555444444566666999999999876
Q ss_pred CChhHHHHHHHHHHHHCCCHHHHHHHHHH------------------------------------------------HHh
Q 002761 170 YDIRQAWLILVEELVRNKYLEDANKVFLR------------------------------------------------GAK 201 (883)
Q Consensus 170 ~~pdvtyn~LI~~y~k~G~~eeA~~lf~~------------------------------------------------M~~ 201 (883)
......+.-++..+.+.|-...|.++..+ +..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 43323566666666666665555544432 221
Q ss_pred -CCCCCCH-H----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCC
Q 002761 202 -GGLRATD-E----IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275 (883)
Q Consensus 202 -~gi~pd~-~----tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~g 275 (883)
.+-.|.. . ..-=.+-++...|++.++.+.|+.|...|.+.-..+--++.++|...+..++|..+|..+.. ..+
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~-~~~ 358 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY-SDG 358 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh-ccc
Confidence 0111221 1 12234556788999999999999999999775666888999999999999999999999863 221
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC-----------CCCCCHHHH-HHHHHHHHHcCCHHHH
Q 002761 276 ----MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK-----------RLQPNVKTY-ALLVECFTKYCAVTEA 339 (883)
Q Consensus 276 ----i~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~-----------gi~Pd~~Ty-~~LI~a~~k~G~~eeA 339 (883)
..++......|..+|...+ +.++|..+++.+.+... ...||-..+ ..++..+.-.|++.+|
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e---~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESE---QLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcc---cHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 2335555788999999999 66699999999986201 122333333 4456788999999999
Q ss_pred HHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761 340 IRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392 (883)
Q Consensus 340 ~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~ 392 (883)
++.++.+....+.+.- ....+-+.+...|++.+|...++.....
T Consensus 436 e~~le~l~~~aP~n~~---------l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 436 QKKLEDLSSTAPANQN---------LRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999864332221 4678899999999999999999776554
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.06 E-value=3.6e-08 Score=115.77 Aligned_cols=261 Identities=11% Similarity=0.038 Sum_probs=174.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002761 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169 (883)
Q Consensus 90 ~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g 169 (883)
.++-.|...|+.||.+||..+|.-||..|+++.|- +|.-|.-..+..+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45566777888888888888888888888888887 8888887777778888888888888888877665
Q ss_pred CChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHH
Q 002761 170 YDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME-AAGRMATTFHFN 247 (883)
Q Consensus 170 ~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~-~~G~~Pd~~tyn 247 (883)
.|.. +|+.|..+|...|++.- |+...+ -.-.++..+..+|-......++..+. ..+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 4444 88888888888888766 332222 12234455566665555555544432 223444544
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 002761 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327 (883)
Q Consensus 248 ~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI 327 (883)
++|.-..-.|.++.+.+++..|.. .....|-.+ .|+-+..... ...++...... ..+ .|+..+|.+++
T Consensus 144 n~illlv~eglwaqllkll~~~Pv-sa~~~p~~v----fLrqnv~~nt-----pvekLl~~cks-l~e-~~~s~~l~a~l 211 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPV-SAWNAPFQV----FLRQNVVDNT-----PVEKLLNMCKS-LVE-APTSETLHAVL 211 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCc-ccccchHHH----HHHHhccCCc-----hHHHHHHHHHH-hhc-CCChHHHHHHH
Confidence 344445667788888888887773 222223333 2443333331 22233333332 134 69999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcce
Q 002761 328 ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM 401 (883)
Q Consensus 328 ~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~ 401 (883)
.+-.-+|+++.|..++.+|++.|....... |-.||-+ .|...-+..++.-|.+.|+. |...|
T Consensus 212 ~~alaag~~d~Ak~ll~emke~gfpir~Hy--------FwpLl~g---~~~~q~~e~vlrgmqe~gv~-p~seT 273 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHY--------FWPLLLG---INAAQVFEFVLRGMQEKGVQ-PGSET 273 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHHcCCCccccc--------chhhhhc---CccchHHHHHHHHHHHhcCC-CCcch
Confidence 999999999999999999998876543321 2234433 88889999999999999984 44433
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.06 E-value=2.9e-07 Score=105.64 Aligned_cols=284 Identities=10% Similarity=0.021 Sum_probs=211.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHH
Q 002761 80 ARNRDAPRVNDVIYDMIAAGLSPGPRS-FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI--ALARLFGSKGLAT 156 (883)
Q Consensus 80 ~k~G~~~~A~~lf~~M~~~G~~pd~~t-yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~--~LI~a~~~~g~~~ 156 (883)
.-.|+++.|.+.+....+.. +++.. |-....+..+.|+++.|...|.++.+ ..|+...+. .....+...|+++
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHH
Confidence 34699999998888776542 22333 33334444788999999999999976 456654443 3466888999999
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChHHHHH
Q 002761 157 KGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-------EIYDLMIAEDCKAGDHSNALE 229 (883)
Q Consensus 157 ~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-------~tyn~LI~a~~k~g~~eeA~~ 229 (883)
.|...++.+.+.......+...+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...+
T Consensus 171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 171 AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999887544448899999999999999999999999987655332 234444554445555566666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHh
Q 002761 230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309 (883)
Q Consensus 230 lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M 309 (883)
+++.+.+. .+.+......+...+...|+.++|..++++.. + ..||.. -.++.+.+..+ +..++++..+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l--~--~~~~~~--l~~l~~~l~~~---~~~~al~~~e~~ 320 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGL--K--RQYDER--LVLLIPRLKTN---NPEQLEKVLRQQ 320 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--h--cCCCHH--HHHHHhhccCC---ChHHHHHHHHHH
Confidence 66665443 34577888999999999999999999999887 3 244442 12445555567 566999999998
Q ss_pred HhccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q 002761 310 VEDHKRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 388 (883)
Q Consensus 310 ~~~~~gi~Pd~-~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~ 388 (883)
.+ -.||. ..+.++-..|.+.+++++|...|+...+....+ .+|-.|...+.+.|+.++|.+++++
T Consensus 321 lk----~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~----------~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 321 IK----QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA----------YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred Hh----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 86 34654 456777889999999999999999998743221 1467899999999999999999997
Q ss_pred Hhh
Q 002761 389 MAK 391 (883)
Q Consensus 389 M~~ 391 (883)
-..
T Consensus 387 ~l~ 389 (398)
T PRK10747 387 GLM 389 (398)
T ss_pred HHh
Confidence 643
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.5e-05 Score=95.41 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=79.4
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCH
Q 002761 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 379 (883)
Q Consensus 300 ~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~ 379 (883)
++|+++|.+.++ .-.-|...-|.+--.++..|++.+|..+|..+++... .+.++|-.+-+.|...|++
T Consensus 629 ~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~---------~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 629 EKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS---------DFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred HHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh---------hCCceeeeHHHHHHHHHHH
Confidence 345555555543 1122344444444455555555555555555554211 1122333455555555555
Q ss_pred HHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCC
Q 002761 380 IELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPD 459 (883)
Q Consensus 380 ~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd 459 (883)
..|+++|+.....-.+ ..+. -+...|+++....|.+.+|....- ...-+.|.
T Consensus 697 ~~AIqmYe~~lkkf~~-~~~~-------------------------~vl~~Lara~y~~~~~~eak~~ll--~a~~~~p~ 748 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYK-KNRS-------------------------EVLHYLARAWYEAGKLQEAKEALL--KARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cCCH-------------------------HHHHHHHHHHHHhhhHHHHHHHHH--HHHHhCCc
Confidence 5555555554433321 1111 124467788888999999988775 33445565
Q ss_pred ccceeccchHHHHHHHHHHh----------------hchHHHHHHHHHHhcCCCc
Q 002761 460 AVGFIYSNPMETSFKQRCLE----------------DGKKYHRKLLRTLQNEGPA 498 (883)
Q Consensus 460 ~~~~ty~~li~~~l~~~c~~----------------g~~~~A~~Ll~eM~~~G~~ 498 (883)
..+..||..+ ++...|.. +..+.|.++|.+|...+-.
T Consensus 749 ~~~v~FN~a~--v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 749 NTSVKFNLAL--VLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred cchHHhHHHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4444333222 12222322 2346888888888655544
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.99 E-value=4.4e-06 Score=105.14 Aligned_cols=361 Identities=13% Similarity=0.046 Sum_probs=210.7
Q ss_pred HHHHHHHhCCChhhHHHHHHcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 002761 28 SAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSF 107 (883)
Q Consensus 28 ~LI~~~~k~g~~~~A~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~ty 107 (883)
.++.-+.+++.+.-+.+++. +.|-... -.++... ....+...++...+..|.+.. +-+....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~r~~~-------------~~~~~~~~~~~~~~~~~y~~~-~~~~~~l 379 (987)
T PRK09782 318 ATLPVLLKEGQYDAAQKLLA--TLPANEM--LEERYAV-------------SVATRNKAEALRLARLLYQQE-PANLTRL 379 (987)
T ss_pred HHHHHHHhccHHHHHHHHhc--CCCcchH--HHHHHhh-------------ccccCchhHHHHHHHHHHhcC-CCCHHHH
Confidence 34667777777775555532 4443331 1222211 112244455555555555431 1122222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH---------------------
Q 002761 108 HGLVVAYTLNGDHEGAMHSLKRELSA-G-VRPLHETLIALARLFGSKGL---ATKGLEI--------------------- 161 (883)
Q Consensus 108 n~LI~a~~~~g~~~~A~~lf~~M~~~-G-i~Pd~~ty~~LI~a~~~~g~---~~~A~~l--------------------- 161 (883)
-.+--...+.|+.++|..+|+..... + -.++....+-++..|.+.+. ...+..+
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD 459 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh
Confidence 22333334566666666666665431 1 12233334455555555544 2222222
Q ss_pred -HHHHHHc-CCCh---hH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761 162 -LAAMEKI-NYDI---RQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235 (883)
Q Consensus 162 -~~~m~~~-g~~p---dv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~ 235 (883)
.....+. +..| +. .|..+-.++.. |+.++|...|.+.... .|+......+...+...|++++|...|+.+.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1111111 1112 23 66777777766 7888888877776653 3665443344444567888888888888875
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC
Q 002761 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315 (883)
Q Consensus 236 ~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~g 315 (883)
.. .|+...+..+...+.+.|+.++|...|+... ... +.+...+..+...+...| +.++|+..|.+..+
T Consensus 537 ~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL--~l~-P~~~~l~~~La~~l~~~G---r~~eAl~~~~~AL~---- 604 (987)
T PRK09782 537 LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAE--QRG-LGDNALYWWLHAQRYIPG---QPELALNDLTRSLN---- 604 (987)
T ss_pred cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcC-CccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHH----
Confidence 54 3444556666777888888888888888877 222 222223333333444557 55688888888875
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 002761 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP 395 (883)
Q Consensus 316 i~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~ 395 (883)
+.|+...|..+-.++.+.|++++|...|+........... .++.+-..+...|+.++|+..|++..+..
T Consensus 605 l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---------a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-- 673 (987)
T PRK09782 605 IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---------YQAALGYALWDSGDIAQSREMLERAHKGL-- 673 (987)
T ss_pred hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence 5677777888888888888888888888888765433222 46777788888888888888888887654
Q ss_pred CCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCc
Q 002761 396 VPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDA 460 (883)
Q Consensus 396 i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~ 460 (883)
|.+..+ ...++..+...|..++|...++... .+.|+.
T Consensus 674 -P~~~~a-------------------------~~nLA~al~~lGd~~eA~~~l~~Al--~l~P~~ 710 (987)
T PRK09782 674 -PDDPAL-------------------------IRQLAYVNQRLDDMAATQHYARLVI--DDIDNQ 710 (987)
T ss_pred -CCCHHH-------------------------HHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCC
Confidence 433321 1234555566888888888887443 345654
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.99 E-value=1.8e-09 Score=117.75 Aligned_cols=259 Identities=17% Similarity=0.142 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCC
Q 002761 109 GLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA-LARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNK 187 (883)
Q Consensus 109 ~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~-LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G 187 (883)
.+-..+.+.|++++|++++++-......|+...|-. +...+-..++.+.|...++++...+......+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 335556677888888888755443332344444433 33445556778888888888877654321256666666 5777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002761 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATF 266 (883)
Q Consensus 188 ~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G-~~Pd~~tyn~LI~~y~k~G~~e~A~~lf 266 (883)
++++|.+++...-+.. ++...+..++..+.+.++++++..+++...... ..++...|..+...|.+.|+.++|.++|
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888887776654432 455667777777888888888888887766432 3456677777777788888888888888
Q ss_pred HHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002761 267 ENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA 345 (883)
Q Consensus 267 ~~M~~g~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~ 345 (883)
++... ..| |....+.++..+...| +..++.+++....+ ....|...+..+-.+|...|+.++|..+|+.
T Consensus 170 ~~al~----~~P~~~~~~~~l~~~li~~~---~~~~~~~~l~~~~~---~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 170 RKALE----LDPDDPDARNALAWLLIDMG---DYDEAREALKRLLK---AAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHH----H-TT-HHHHHHHHHHHCTTC---HHHHHHHHHHHHHH---H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHH----cCCCCHHHHHHHHHHHHHCC---ChHHHHHHHHHHHH---HCcCHHHHHHHHHHHhccccccccccccccc
Confidence 77652 244 4666777777787777 45566666666654 2234445566777778888888888888888
Q ss_pred HHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761 346 LQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389 (883)
Q Consensus 346 M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M 389 (883)
..+....... ....+.+++.+.|+.++|.++..+.
T Consensus 240 ~~~~~p~d~~---------~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 240 ALKLNPDDPL---------WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHSTT-HH---------HHHHHHHHHT---------------
T ss_pred cccccccccc---------ccccccccccccccccccccccccc
Confidence 7753322211 2356777888888888888777665
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.96 E-value=2.8e-09 Score=116.19 Aligned_cols=253 Identities=14% Similarity=0.084 Sum_probs=111.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRS-FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK 157 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~t-yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~ 157 (883)
+.+.|+++.|+++++.-....-+|+... |..+-..+-..++++.|...++++...+-. +...+..++.. ...+++++
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccc
Confidence 5577999999999976544432344444 444445556678999999999999876544 55567777777 78999999
Q ss_pred HHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761 158 GLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235 (883)
Q Consensus 158 A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~-gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~ 235 (883)
|..++....+.. ++. .+..++..|.+.++++++..+++..... ..+.+...|..+...+.+.|+.++|.++++...
T Consensus 96 A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 96 ALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988776554 333 6778888999999999999999998753 245677889999999999999999999999998
Q ss_pred HcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761 236 AAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314 (883)
Q Consensus 236 ~~G~~P-d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~ 314 (883)
+.. | |....+.++..+...|+.+++.+++..... . ...|...|..+..+|...| +.++|+.+|.+..+
T Consensus 174 ~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~--~-~~~~~~~~~~la~~~~~lg---~~~~Al~~~~~~~~--- 242 (280)
T PF13429_consen 174 ELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLK--A-APDDPDLWDALAAAYLQLG---RYEEALEYLEKALK--- 242 (280)
T ss_dssp HH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH--H--HTSCCHCHHHHHHHHHHT----HHHHHHHHHHHHH---
T ss_pred HcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH--H-CcCHHHHHHHHHHHhcccc---cccccccccccccc---
Confidence 863 4 577889999999999999999999988773 1 1455667889999999999 66799999999886
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761 315 RLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQ 347 (883)
Q Consensus 315 gi~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~ 347 (883)
..| |..+...+..++...|+.++|..+.+...
T Consensus 243 -~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 243 -LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HSTT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccccc
Confidence 345 67777888999999999999999987664
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.96 E-value=1.6e-06 Score=99.53 Aligned_cols=252 Identities=15% Similarity=0.114 Sum_probs=197.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFH--GLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn--~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~ 156 (883)
..+.|+++.|...|.++.+. .|+...+- .....+...|+++.|...++++.+.. +-+...+..+...|.+.|+++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 35779999999999999864 46654333 33567888999999999999998765 235778889999999999999
Q ss_pred HHHHHHHHHHHcCCChhH--------HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 002761 157 KGLEILAAMEKINYDIRQ--------AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228 (883)
Q Consensus 157 ~A~~l~~~m~~~g~~pdv--------tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~ 228 (883)
.|..++..+.+.+..++. +|..++....+..+.+...++++.+... .+.+......+..++...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999998765332 3344455555556667777777776542 3456788889999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 002761 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308 (883)
Q Consensus 229 ~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~ 308 (883)
+++....+. .|+.. -.++.+.+..++.+++.+..+...+ ..+-|...+.++-..|.+.+ ++.+|.+.|+.
T Consensus 284 ~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk---~~P~~~~l~l~lgrl~~~~~---~~~~A~~~le~ 353 (398)
T PRK10747 284 QIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIK---QHGDTPLLWSTLGQLLMKHG---EWQEASLAFRA 353 (398)
T ss_pred HHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 999998874 44442 2234445566999999999998873 22345666888999999999 66799999999
Q ss_pred hHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002761 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348 (883)
Q Consensus 309 M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~ 348 (883)
..+ ..|+..+|..+-.++.+.|+.++|.++++.-..
T Consensus 354 al~----~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 354 ALK----QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 986 679999999999999999999999999987643
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.93 E-value=2.2e-06 Score=98.79 Aligned_cols=292 Identities=12% Similarity=0.048 Sum_probs=203.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPR-SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH--ETLIALARLFGSKGLA 155 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~-tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~--~ty~~LI~a~~~~g~~ 155 (883)
....|++..|.+.+....+. .|+.. .|-..-.++.+.|+++.|.+.|.+..+. .|+. ...-.....+...|++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCH
Confidence 55689999999999887765 45533 3334456677889999999999998764 3554 2344457788889999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HHcCChHHHHHHHH
Q 002761 156 TKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED---CKAGDHSNALEIAY 232 (883)
Q Consensus 156 ~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~---~k~g~~eeA~~lf~ 232 (883)
+.|...++.+.+.......++..+...|.+.|++++|.+++..+.+.++.+....-..-..++ ...+..+++.+.+.
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999875443488899999999999999999999999887543332212122222 33333333444555
Q ss_pred HHHHcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHH-HHHHHHHHHcCCcccHHHHHHHHHH
Q 002761 233 EMEAAGR---MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY-NCVIQAYTRAESYDRVQDVAELLGM 308 (883)
Q Consensus 233 ~M~~~G~---~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~ty-n~LI~ay~~~G~~d~~~eAl~lf~~ 308 (883)
.+..... +.+...+..+...+...|+.+.|..++++..+ . .||.... -.++..+..... +....+.+.++.
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~--~pd~~~~~~~~l~~~~~l~~-~~~~~~~~~~e~ 324 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--K--LGDDRAISLPLCLPIPRLKP-EDNEKLEKLIEK 324 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--h--CCCcccchhHHHHHhhhcCC-CChHHHHHHHHH
Confidence 5554421 13788899999999999999999999999873 2 3443321 013343333321 256688888888
Q ss_pred hHhccCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHH
Q 002761 309 MVEDHKRLQPNVK---TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 385 (883)
Q Consensus 309 M~~~~~gi~Pd~~---Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~l 385 (883)
..+ ..|+.. ...++-..|.+.|++++|.++|+........|+.. .+..+...+.+.|+.++|.++
T Consensus 325 ~lk----~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--------~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 325 QAK----NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--------DLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred HHH----hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--------HHHHHHHHHHHcCCHHHHHHH
Confidence 776 345544 44577778999999999999999533222222222 356899999999999999999
Q ss_pred HHHHhh
Q 002761 386 LEAMAK 391 (883)
Q Consensus 386 f~~M~~ 391 (883)
+++-..
T Consensus 393 ~~~~l~ 398 (409)
T TIGR00540 393 RQDSLG 398 (409)
T ss_pred HHHHHH
Confidence 998543
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.91 E-value=2.1e-08 Score=117.64 Aligned_cols=245 Identities=16% Similarity=0.066 Sum_probs=128.3
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002761 43 QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEG 122 (883)
Q Consensus 43 ~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~ 122 (883)
..|...|+.||.+||.++|..||.. |+++.|- +|.-|.-..+..+...|+.++.+..++++.+.
T Consensus 14 a~~e~~gi~PnRvtyqsLiarYc~~---------------gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~En 77 (1088)
T KOG4318|consen 14 ALHEISGILPNRVTYQSLIARYCTK---------------GDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAEN 77 (1088)
T ss_pred HHHHHhcCCCchhhHHHHHHHHccc---------------CCCcccc-chhhhhcccccccchhHHHHHhcccccccccC
Confidence 4566779999999999999998877 5556666 67767666666666777777777777776665
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HH-------HcCCChhH---------------HHHHH
Q 002761 123 AMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAA-ME-------KINYDIRQ---------------AWLIL 179 (883)
Q Consensus 123 A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~-m~-------~~g~~pdv---------------tyn~L 179 (883)
+. .|...||+.|+.+|...|++.. ++..++ |. ..|+.... --.++
T Consensus 78 pk-----------ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ 145 (1088)
T KOG4318|consen 78 PK-----------EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA 145 (1088)
T ss_pred CC-----------CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH
Confidence 54 5666777777777777776544 111111 11 11211100 01122
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC
Q 002761 180 VEELVRNKYLEDANKVFLRGAKGG-LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR-MATTFHFNHLLSCQATCG 257 (883)
Q Consensus 180 I~~y~k~G~~eeA~~lf~~M~~~g-i~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~-~Pd~~tyn~LI~~y~k~G 257 (883)
+....-.|.++.+.+++..|.... ..|-.+ +|+-+..... -..++.. |.+.+. .|+..+|.++++.-.-+|
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~-~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLN-MCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHH-HHHHhhcCCChHHHHHHHHHHHhcC
Confidence 223333344444444443332110 001111 1222222111 1112222 112112 356666666666666666
Q ss_pred CHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHH
Q 002761 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332 (883)
Q Consensus 258 ~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k 332 (883)
+++.|..++.+|+ +.|+.-+..-|-.||.| .+ .+.-+..+++.|.+ .|+.|+..|+.-.+..+.+
T Consensus 219 ~~d~Ak~ll~emk--e~gfpir~HyFwpLl~g---~~---~~q~~e~vlrgmqe--~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMK--EKGFPIRAHYFWPLLLG---IN---AAQVFEFVLRGMQE--KGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred chhhHHHHHHHHH--HcCCCcccccchhhhhc---Cc---cchHHHHHHHHHHH--hcCCCCcchhHHHHHhhhc
Confidence 6666666666666 56666555555555555 33 33344455555555 5666666666544444443
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.86 E-value=1.8e-06 Score=89.08 Aligned_cols=200 Identities=16% Similarity=0.051 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 002761 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEEL 183 (883)
Q Consensus 104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y 183 (883)
...+..+...|...|++++|...|++..... +.+...+..+...+...|+++.|...+.+..+........+..+...|
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3455556666666666666666666655432 223445555666666666666666666666655433223555666666
Q ss_pred HHCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002761 184 VRNKYLEDANKVFLRGAKGGLRA-TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262 (883)
Q Consensus 184 ~k~G~~eeA~~lf~~M~~~gi~p-d~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A 262 (883)
...|++++|...|.+.......+ ....+..+...+...|++++|...|........ .+...+..+...|.+.|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665432111 234455555666666666666666666655421 2344556666666666666666
Q ss_pred HHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311 (883)
Q Consensus 263 ~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~ 311 (883)
...|++.. .. ...+...+..+...+...| +.++|..++..+..
T Consensus 189 ~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQ--QT-YNQTAESLWLGIRIARALG---DVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHH--Hh-CCCCHHHHHHHHHHHHHHh---hHHHHHHHHHHHHh
Confidence 66666655 22 2334455555666666666 44466666655554
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.85 E-value=1.8e-06 Score=89.03 Aligned_cols=196 Identities=15% Similarity=0.039 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 002761 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220 (883)
Q Consensus 141 ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k 220 (883)
.+..+...+...|++++|...+.+..+........+..+...|...|++++|...|++..+.. +.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 344444455555555555555555444321111144444455555555555555555444422 1223344444445555
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccH
Q 002761 221 AGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 299 (883)
Q Consensus 221 ~g~~eeA~~lf~~M~~~G~~P-d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~ 299 (883)
.|++++|.+.|.........| ....+..+...|.+.|++++|...|++... . .+.+...|..+...+...| +.
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~~~la~~~~~~~---~~ 185 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--I-DPQRPESLLELAELYYLRG---QY 185 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CcCChHHHHHHHHHHHHcC---CH
Confidence 555555555555544322111 223334444445555555555555554441 1 1112334444445555555 33
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346 (883)
Q Consensus 300 ~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M 346 (883)
++|...+++... . ...+...+..+...+...|+.++|..+.+.+
T Consensus 186 ~~A~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 186 KDARAYLERYQQ--T-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345445554444 2 2234444444445555555555555554444
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.84 E-value=5.8e-06 Score=95.32 Aligned_cols=259 Identities=12% Similarity=0.023 Sum_probs=183.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGP--RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~--~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~ 156 (883)
+.+.|+.+.|...|.+..+.. |+. ...-+....+...|+++.|...++.+.+.. +-+...+..+...+.+.|+++
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 556799999999999987653 443 333445777888999999999999998875 226678889999999999999
Q ss_pred HHHHHHHHHHHcCCChhHHHH-HHHHHH---HHCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCChHHHHH
Q 002761 157 KGLEILAAMEKINYDIRQAWL-ILVEEL---VRNKYLEDANKVFLRGAKGG---LRATDEIYDLMIAEDCKAGDHSNALE 229 (883)
Q Consensus 157 ~A~~l~~~m~~~g~~pdvtyn-~LI~~y---~k~G~~eeA~~lf~~M~~~g---i~pd~~tyn~LI~a~~k~g~~eeA~~ 229 (883)
.|.+++..+.+.+..+...+. .-..++ ...+..+.+...+..+.... .+.+...+..+...+...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 999999999999765443332 111221 22222232333444444322 11377889999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Q 002761 230 IAYEMEAAGRMATTFHFNHLLSCQ--ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307 (883)
Q Consensus 230 lf~~M~~~G~~Pd~~tyn~LI~~y--~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~ 307 (883)
++++..+.........+- ++..+ ...++.+.+.+.++...+ ...-.|+.....++-..|.+.| +..+|.+.|+
T Consensus 285 ~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk-~~p~~~~~~ll~sLg~l~~~~~---~~~~A~~~le 359 (409)
T TIGR00540 285 IIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAK-NVDDKPKCCINRALGQLLMKHG---EFIEAADAFK 359 (409)
T ss_pred HHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHcc---cHHHHHHHHH
Confidence 999999864332211111 33333 345778888888877663 2222222245568888999999 6669999999
Q ss_pred HhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347 (883)
Q Consensus 308 ~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~ 347 (883)
.... ....||..++..+...+.+.|+.++|.+++++-.
T Consensus 360 ~a~a--~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 360 NVAA--CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhHH--hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4222 2467999999999999999999999999998764
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=98.75 E-value=4e-06 Score=100.44 Aligned_cols=249 Identities=10% Similarity=-0.005 Sum_probs=161.9
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002761 83 RDAPRVNDVIYDMIAAGLSPG-PRSFHGLVVAYTL---------NGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSK 152 (883)
Q Consensus 83 G~~~~A~~lf~~M~~~G~~pd-~~tyn~LI~a~~~---------~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~ 152 (883)
++++.|..+|++..+. .|+ ...|..+-.+|.. .+++++|...+++...... -+...+..+-..+...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence 3456888888888765 343 4455555444432 2347888888888776531 2566677777778888
Q ss_pred CCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHH
Q 002761 153 GLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIA 231 (883)
Q Consensus 153 g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf 231 (883)
|++++|...|++..+.+......|..+-..|...|++++|...|++..+.. |+. ..+..+...+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 899999999988888764433377788888888999999999998887743 443 23334445566688888898888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761 232 YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311 (883)
Q Consensus 232 ~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~ 311 (883)
++......+-+...+..+-..|...|+.++|...+.++.. ...-+...++.+...|+..|. .|...++.+.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~-----~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNSE-----RALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccHH-----HHHHHHHHHHH
Confidence 8877653222444567777788888999999998888662 112234445666666777772 55555555554
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002761 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348 (883)
Q Consensus 312 ~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~ 348 (883)
. ....|+...+..++ |.-.|+-+.+..+ +.+.+
T Consensus 502 ~-~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 502 S-EQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred H-hhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhc
Confidence 2 23344444444444 4445666666655 66654
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.73 E-value=3.5e-05 Score=84.75 Aligned_cols=289 Identities=10% Similarity=-0.014 Sum_probs=223.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002761 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159 (883)
Q Consensus 80 ~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~ 159 (883)
.-.|++..|+++..+-.+.+- -....|-.-..+--+.|+.+.|-.++.+..+.--.++...+-+..+.....|++..|.
T Consensus 95 l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 347999999999999877663 3345666667777788999999999998876533556667778888889999999999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHH
Q 002761 160 EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-------EIYDLMIAEDCKAGDHSNALEIAY 232 (883)
Q Consensus 160 ~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-------~tyn~LI~a~~k~g~~eeA~~lf~ 232 (883)
.-.+++.+.+..+..+......+|.+.|++.....+...|.+.|+--+. .+|+.+++-....+..+.-..-++
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999999998877779999999999999999999999999998876554 488888888777776666555666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhc
Q 002761 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312 (883)
Q Consensus 233 ~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~ 312 (883)
....+ .+-+...-.+++.-+.+||+.++|.++..+-. +.+..|... ..-.+.+-++.. .-++..++-.+.
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L--k~~~D~~L~----~~~~~l~~~d~~---~l~k~~e~~l~~ 323 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL--KRQWDPRLC----RLIPRLRPGDPE---PLIKAAEKWLKQ 323 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH--HhccChhHH----HHHhhcCCCCch---HHHHHHHHHHHh
Confidence 55433 34456677788899999999999999998877 566666632 223455556433 444444444442
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392 (883)
Q Consensus 313 ~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~ 392 (883)
.+-.| -.+.+|=.-|.+.+.+.+|..+|+...+. .+...+|+-+-++|.+.|...+|.+.+++-...
T Consensus 324 -h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~----------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 324 -HPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL----------RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred -CCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc----------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 34555 56777888899999999999999977652 233347999999999999999999999987643
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.67 E-value=0.00012 Score=87.47 Aligned_cols=325 Identities=15% Similarity=0.094 Sum_probs=229.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLATK 157 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~~ 157 (883)
+++ |++++|..++.+..+.. +.+...|-+|-..|-+.|+.++++..+-. ..-+.| |..-|..+-....+.|++..
T Consensus 150 far-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~ll--AAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLL--AAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHH--HHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 555 99999999999999876 56788999999999999999999887643 333444 66778888888899999999
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHH
Q 002761 158 GLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD----EIYDLMIAEDCKAGDHSNALEIAYE 233 (883)
Q Consensus 158 A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~----~tyn~LI~a~~k~g~~eeA~~lf~~ 233 (883)
|.-.|.+.++.....-..+--=+..|-+.|+...|..-|.+|.....+.|. .+--.++..|...++-+.|.+.+..
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999986433233344467889999999999999999875321122 2333456667778888999988887
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCC---------------------------CHHHHHH
Q 002761 234 MEAA-GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP---------------------------DTETYNC 285 (883)
Q Consensus 234 M~~~-G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~p---------------------------d~~tyn~ 285 (883)
.... +-..+...+|.++..|.+...++.|......+. .....+ +...+-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~--~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r- 382 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDR--NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR- 382 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHh--ccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-
Confidence 7662 223456678899999999999999998888777 322222 222211
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCC
Q 002761 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP--NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 363 (883)
Q Consensus 286 LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P--d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~ 363 (883)
+.-++.+.... ...+++ .+.... ..+.| +.-.|.-+..+|...|++.+|+.+|..+.+.......
T Consensus 383 l~icL~~L~~~-e~~e~l--l~~l~~--~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~-------- 449 (895)
T KOG2076|consen 383 LMICLVHLKER-ELLEAL--LHFLVE--DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA-------- 449 (895)
T ss_pred Hhhhhhccccc-chHHHH--HHHHHH--hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch--------
Confidence 12223333211 233343 333333 24333 3456778889999999999999999999875543331
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHH
Q 002761 364 DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGE 443 (883)
Q Consensus 364 dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~e 443 (883)
..|--+-.+|-..|..++|.+.|+...... |.+.- ..+ .|+......|..++
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~---p~~~D-------~Ri------------------~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILA---PDNLD-------ARI------------------TLASLYQQLGNHEK 501 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCchh-------hhh------------------hHHHHHHhcCCHHH
Confidence 247788899999999999999999998765 33221 000 13344455899999
Q ss_pred HHHHHHHh
Q 002761 444 RKRWVPRR 451 (883)
Q Consensus 444 A~~l~~~m 451 (883)
|.+.+..|
T Consensus 502 alEtL~~~ 509 (895)
T KOG2076|consen 502 ALETLEQI 509 (895)
T ss_pred HHHHHhcc
Confidence 99998754
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.65 E-value=0.00041 Score=83.02 Aligned_cols=361 Identities=12% Similarity=0.040 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHcCCC---CChhHHHHHHHHHHccCChHHHH------------------HHH-HHH
Q 002761 23 VVPIRSAMSSPEKKTRRKKQQRRQQKHGD---SLLSTNGSVVSAAEQGLRLIFME------------------ELM-QHA 80 (883)
Q Consensus 23 ~~syn~LI~~~~k~g~~~~A~~M~~~gv~---Pd~~ty~~ll~a~~~~~~~~~~~------------------~L~-~~~ 80 (883)
+...-...+-+.-.|++++|.+++..-++ -+...|-+|-..+...|+...+. .+. ...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 44444444444555999999777765332 23344666666665555443222 122 244
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHH
Q 002761 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL----IALARLFGSKGLAT 156 (883)
Q Consensus 81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty----~~LI~a~~~~g~~~ 156 (883)
+.|++.+|.-.|.+..+.. +++...+--=+..|-+.|+...|..-|.+|....-+.|..-+ -.+++.+...+.-+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 5677888888888888765 345444445566778889999999999888775332222222 23455566677778
Q ss_pred HHHHHHHHHHHcCCCh-hH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH----------------------HHHH
Q 002761 157 KGLEILAAMEKINYDI-RQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD----------------------EIYD 212 (883)
Q Consensus 157 ~A~~l~~~m~~~g~~p-dv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~----------------------~tyn 212 (883)
.|.+.+......+..- +. .+|++...|.+....+.|......+......+|. .+|+
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 8888888777633222 22 7888899999999999888888777652222222 1222
Q ss_pred H----HHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHH
Q 002761 213 L----MIAEDCKAGDHSNALEIAYEMEAAGRM--ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286 (883)
Q Consensus 213 ~----LI~a~~k~g~~eeA~~lf~~M~~~G~~--Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~L 286 (883)
. +.-++......+....+..-.....+. -+.-.|.-+.++|-..|++.+|..+|..+. .....-+.+.|--+
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~--~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT--NREGYQNAFVWYKL 455 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh--cCccccchhhhHHH
Confidence 1 222334444445555555555555533 356678889999999999999999999999 55555568899999
Q ss_pred HHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcH
Q 002761 287 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365 (883)
Q Consensus 287 I~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~-Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dt 365 (883)
-.+|-..| ..++|++.|...+. ..|+.. .-.+|-+-+-+.|+.++|.+.+..|..-+....-...+.+-...
T Consensus 456 a~c~~~l~---e~e~A~e~y~kvl~----~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 456 ARCYMELG---EYEEAIEFYEKVLI----LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred HHHHHHHh---hHHHHHHHHHHHHh----cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 99999999 55699999999986 556543 33455567888999999999998876322111000000000002
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761 366 LSLYLRALCREGRIIELLEALEAMAKDN 393 (883)
Q Consensus 366 Yn~LI~~y~~~G~~~eA~~lf~~M~~~G 393 (883)
---..+.|.+.|+.++-+..-..|....
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 2345677888899888777776665543
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.5e-05 Score=85.01 Aligned_cols=248 Identities=14% Similarity=0.063 Sum_probs=173.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C-hhH-HHHHHHHHHHHCCCHH-HHHH
Q 002761 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY-D-IRQ-AWLILVEELVRNKYLE-DANK 194 (883)
Q Consensus 119 ~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~-~-pdv-tyn~LI~~y~k~G~~e-eA~~ 194 (883)
..++++.=.......|+.-+...-+-...+.-...+++.|..+|+++.+... . .|. +|+.++-.--.+.++. -|..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 4445555555555555544443333333344445667777777777766532 1 123 5555443322222221 1222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC
Q 002761 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274 (883)
Q Consensus 195 lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~ 274 (883)
++.- .. --..|..++-+-|+-.++.++|...|+...+.+.. ....|+.+-+-|....+...|..-++... .
T Consensus 322 v~~i---dK--yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---d 392 (559)
T KOG1155|consen 322 VSNI---DK--YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAV---D 392 (559)
T ss_pred HHHh---cc--CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHH---h
Confidence 2221 11 22345556666777888999999999999887533 56788989999999999999999999876 2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 002761 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353 (883)
Q Consensus 275 gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~ 353 (883)
-.+.|-..|-.|-++|.-.+ ...-|+-.|++... ++| |...|.+|-.+|.+.+++++|.+.|......+...
T Consensus 393 i~p~DyRAWYGLGQaYeim~---Mh~YaLyYfqkA~~----~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMK---MHFYALYYFQKALE----LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred cCchhHHHHhhhhHHHHHhc---chHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 23678999999999999999 56689999999875 777 57889999999999999999999999988654332
Q ss_pred ccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002761 354 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391 (883)
Q Consensus 354 ~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~ 391 (883)
++.|..|-+.|-+-++.++|...|++-.+
T Consensus 466 ---------~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 ---------GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ---------hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23588999999999999999999987654
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=98.56 E-value=6.1e-05 Score=90.32 Aligned_cols=265 Identities=12% Similarity=-0.038 Sum_probs=178.0
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---------hcCCHHHHHHHHHHHH
Q 002761 102 PGPRSFHGLVVAYTLN-----GDHEGAMHSLKRELSAGVRPLH-ETLIALARLFG---------SKGLATKGLEILAAME 166 (883)
Q Consensus 102 pd~~tyn~LI~a~~~~-----g~~~~A~~lf~~M~~~Gi~Pd~-~ty~~LI~a~~---------~~g~~~~A~~l~~~m~ 166 (883)
.+...|...+.+-... +.+++|..+|++..+. .|+. ..|..+..++. ..+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4556676777764321 3467899999987764 5653 34544444333 2244789999999998
Q ss_pred HcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 002761 167 KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH 245 (883)
Q Consensus 167 ~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~t 245 (883)
+.......+|..+-..+...|++++|...|++..+.+ |+ ...|..+-..|...|++++|...++...+..-. +...
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 8764433488888888899999999999999988743 55 467888888999999999999999998876433 2223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHH
Q 002761 246 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324 (883)
Q Consensus 246 yn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~ 324 (883)
+..+...+...|++++|...+++.. ... .| +...+..+-..|...| +.++|...+.++.. ..|+..+..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l--~~~-~p~~~~~~~~la~~l~~~G---~~~eA~~~~~~~~~----~~~~~~~~~ 478 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELR--SQH-LQDNPILLSMQVMFLSLKG---KHELARKLTKEIST----QEITGLIAV 478 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHH--Hhc-cccCHHHHHHHHHHHHhCC---CHHHHHHHHHHhhh----ccchhHHHH
Confidence 3344555777899999999998876 221 24 3445677778888999 66699999988754 356555544
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761 325 -LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393 (883)
Q Consensus 325 -~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G 393 (883)
.+-..|+..| +.|...++.+.+.......- +..+-..|.-.|+-+.+..+ +++.+.|
T Consensus 479 ~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 479 NLLYAEYCQNS--ERALPTIREFLESEQRIDNN---------PGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC---------chHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4444667667 57888777766421110000 11233445556777777766 8887766
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=5.6e-05 Score=81.02 Aligned_cols=294 Identities=15% Similarity=0.116 Sum_probs=198.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCC
Q 002761 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH------ETLIALARLFGSKGL 154 (883)
Q Consensus 81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~------~ty~~LI~a~~~~g~ 154 (883)
-..+.+.|..+|-+|.+.. +-+..+--+|-+.|-+.|..+.|+++..-+..+ ||. ...--|-.-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 3467799999999999642 223445556778888999999999999888764 442 123456667888899
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHH
Q 002761 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD----EIYDLMIAEDCKAGDHSNALEI 230 (883)
Q Consensus 155 ~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~----~tyn~LI~a~~k~g~~eeA~~l 230 (883)
++.|..+|..+...+--....-..|+..|-+..++++|.++-.++.+.+-.+.. .-|--|...+....+++.|..+
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999998865433336778899999999999999999988875543332 2444555555567788999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761 231 AYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310 (883)
Q Consensus 231 f~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~ 310 (883)
+....+..-+ .+..--.+-+.+...|+++.|.+.++.+. +.+..--..+-..|..+|.+.| +.++....+..+.
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~--eQn~~yl~evl~~L~~~Y~~lg---~~~~~~~fL~~~~ 276 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVL--EQNPEYLSEVLEMLYECYAQLG---KPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence 9888776422 23333345567888999999999999988 3332223455778899999999 6678888888887
Q ss_pred hccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHH---HcCCHHHHHHHHH
Q 002761 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC---REGRIIELLEALE 387 (883)
Q Consensus 311 ~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~---~~G~~~eA~~lf~ 387 (883)
+. .++...-..|-.--....-.+.|..+...-.+.. |++. .+..||+.-. ..|+..+.+.+++
T Consensus 277 ~~----~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~--------gf~rl~~~~l~daeeg~~k~sL~~lr 342 (389)
T COG2956 277 ET----NTGADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMR--------GFHRLMDYHLADAEEGRAKESLDLLR 342 (389)
T ss_pred Hc----cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHH--------HHHHHHHhhhccccccchhhhHHHHH
Confidence 73 2332222333222222334455655554443322 2222 2445666543 3467888888999
Q ss_pred HHhhCCCCCCC
Q 002761 388 AMAKDNQPVPP 398 (883)
Q Consensus 388 ~M~~~Gi~i~p 398 (883)
.|....++-.|
T Consensus 343 ~mvge~l~~~~ 353 (389)
T COG2956 343 DMVGEQLRRKP 353 (389)
T ss_pred HHHHHHHhhcC
Confidence 99776654333
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=1.1e-05 Score=93.60 Aligned_cols=280 Identities=14% Similarity=0.105 Sum_probs=199.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--hhH-HHHHHHHHHHHCCCHH-HHHH
Q 002761 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD--IRQ-AWLILVEELVRNKYLE-DANK 194 (883)
Q Consensus 119 ~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~--pdv-tyn~LI~~y~k~G~~e-eA~~ 194 (883)
+..+|+.+|...... +.-......-+-++|...+++++|+.+|+.+.+...- -+. .|.+.+--+-+.=.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999885443 3334466677889999999999999999999876421 123 7777665443321111 1333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002761 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273 (883)
Q Consensus 195 lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~P-d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~ 273 (883)
+.+.+ +-...||-++-++|.-.++++.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+...
T Consensus 413 Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al--- 482 (638)
T KOG1126|consen 413 LIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL--- 482 (638)
T ss_pred HHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---
Confidence 33332 234589999999999999999999999988875 44 67888888888888899999999999887
Q ss_pred CCCCCCHHHHHH---HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002761 274 DYMKPDTETYNC---VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNY 349 (883)
Q Consensus 274 ~gi~pd~~tyn~---LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~ 349 (883)
..|...||+ |-..|.+.+ +.+.|.-.|++..+ +.|. .+....+-..+-+.|+.++|+++|+.....
T Consensus 483 ---~~~~rhYnAwYGlG~vy~Kqe---k~e~Ae~~fqkA~~----INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 483 ---GVDPRHYNAWYGLGTVYLKQE---KLEFAEFHFQKAVE----INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred ---cCCchhhHHHHhhhhheeccc---hhhHHHHHHHhhhc----CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 778888876 455688888 66699999998875 6674 555666777888999999999999998754
Q ss_pred CCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHH
Q 002761 350 EGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEID 429 (883)
Q Consensus 350 ~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D 429 (883)
.....+.- | -.+..+...++.++|+..|+++++. +|.++.+ |.
T Consensus 553 d~kn~l~~--------~-~~~~il~~~~~~~eal~~LEeLk~~---vP~es~v----~~--------------------- 595 (638)
T KOG1126|consen 553 DPKNPLCK--------Y-HRASILFSLGRYVEALQELEELKEL---VPQESSV----FA--------------------- 595 (638)
T ss_pred CCCCchhH--------H-HHHHHHHhhcchHHHHHHHHHHHHh---CcchHHH----HH---------------------
Confidence 33222211 2 2466677889999999999999775 3666543 22
Q ss_pred HHHHHHHhCCcHHHHHHHHHHhcCCCCCC
Q 002761 430 YIARYISEGGLTGERKRWVPRRGKTPLDP 458 (883)
Q Consensus 430 ~l~~~~~~~G~~~eA~~l~~~m~~~g~~P 458 (883)
++++.+..-|..+.|..-|.- .+.++|
T Consensus 596 llgki~k~~~~~~~Al~~f~~--A~~ldp 622 (638)
T KOG1126|consen 596 LLGKIYKRLGNTDLALLHFSW--ALDLDP 622 (638)
T ss_pred HHHHHHHHHccchHHHHhhHH--HhcCCC
Confidence 345555556666777665552 234455
No 48
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=9.9e-08 Score=69.42 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 002761 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENM 269 (883)
Q Consensus 238 G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M 269 (883)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 49
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.54 E-value=0.0002 Score=86.19 Aligned_cols=338 Identities=13% Similarity=0.070 Sum_probs=226.0
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 002761 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA---GVRPLH------ETLIALARLFGSKGLATKGLEILAA 164 (883)
Q Consensus 94 ~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~---Gi~Pd~------~ty~~LI~a~~~~g~~~~A~~l~~~ 164 (883)
.|...+-.+.+...|.+-..+...|.+.+|...|...... -..+|. .+--.+-+.+-..++.+.|.+.|..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3445565688899999999999999999999999987655 122333 2223344455556789999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCH
Q 002761 165 MEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA-GRMATT 243 (883)
Q Consensus 165 m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~-G~~Pd~ 243 (883)
+.+.....-..|--|..+.-..+...+|...+....... .-+...++.+-..+.+...+..|.+-|....+. -..+|.
T Consensus 522 Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~ 600 (1018)
T KOG2002|consen 522 ILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA 600 (1018)
T ss_pred HHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence 988754221244444433334467788988888876532 344556666666888888888888877666543 223677
Q ss_pred HHHHHHHHHHHH------------cCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761 244 FHFNHLLSCQAT------------CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311 (883)
Q Consensus 244 ~tyn~LI~~y~k------------~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~ 311 (883)
++.-+|-+.|.. .+..++|.++|.+.. ..-+.|...=|-+--.++..| ++.+|..+|.+..+
T Consensus 601 YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGIgiVLA~kg---~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 601 YSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL---RNDPKNMYAANGIGIVLAEKG---RFSEARDIFSQVRE 674 (1018)
T ss_pred hHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH---hcCcchhhhccchhhhhhhcc---CchHHHHHHHHHHH
Confidence 776666665542 356788999999887 233568888899999999999 55599999999988
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002761 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391 (883)
Q Consensus 312 ~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~ 391 (883)
. . .-+.-+|..+-++|...|++..|.++|+...+.....+-.+ ..+.|-.++-++|.+.+|.+.+..-..
T Consensus 675 a--~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~-------vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 675 A--T-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE-------VLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred H--H-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 2 23445778889999999999999999998876543222211 457899999999999999999888776
Q ss_pred CCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCC
Q 002761 392 DNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLD 457 (883)
Q Consensus 392 ~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~ 457 (883)
.. |.+.++ -+...-.+....+....... -.++-+ ...-+.+++|.++|..|...+-.
T Consensus 745 ~~---p~~~~v-~FN~a~v~kkla~s~lr~~k--~t~eev---~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 745 LA---PSNTSV-KFNLALVLKKLAESILRLEK--RTLEEV---LEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred hC---CccchH-HhHHHHHHHHHHHHHHhccc--ccHHHH---HHHHHHHHHHHHHHHHHHhcCCC
Confidence 64 344332 01111111111111100000 112211 22256689999999988776544
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.53 E-value=0.0049 Score=71.67 Aligned_cols=375 Identities=13% Similarity=0.074 Sum_probs=254.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSP--GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~p--d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~ 155 (883)
.+-+.|.+-.+..+......-|+.- --.||+.--..|.+.+.++-|..+|...++- ++-+...|......=-..|..
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcH
Confidence 3444566677777777777666533 2468888899999999999999999887653 344566777777777778889
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761 156 TKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235 (883)
Q Consensus 156 ~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~ 235 (883)
+.-..+|.+....-....+.|-.....+-.+|++..|..++....+..- -+...|-.-+.--..+..++.|..+|....
T Consensus 567 Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 567 ESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 9999999999887555555777777888889999999999998877542 245788888999999999999999998876
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHH-HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE-TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314 (883)
Q Consensus 236 ~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~-tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~ 314 (883)
. ..|+..+|.--++.---.+..++|.+++++..+ ..|+.. .|-.+-+.+-+.+ .++.|.+-|..=.+
T Consensus 646 ~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk----~fp~f~Kl~lmlGQi~e~~~---~ie~aR~aY~~G~k--- 713 (913)
T KOG0495|consen 646 S--ISGTERVWMKSANLERYLDNVEEALRLLEEALK----SFPDFHKLWLMLGQIEEQME---NIEMAREAYLQGTK--- 713 (913)
T ss_pred c--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH----hCCchHHHHHHHhHHHHHHH---HHHHHHHHHHhccc---
Confidence 5 457777777777777778899999999987662 245543 4555566677778 55677766665433
Q ss_pred CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761 315 RLQPNVKT-YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393 (883)
Q Consensus 315 gi~Pd~~T-y~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G 393 (883)
..|+..- |..|..-=-+.|.+-.|..+|+..+-++..... .|-..|.+=.+.|+.+.|..+..+-++.-
T Consensus 714 -~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~---------lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 714 -KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL---------LWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred -cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch---------hHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4566554 444555566788999999999998866554444 37789999999999999999988887764
Q ss_pred CCCCCcceehhhhHHHHHHH---------HhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCc-cce
Q 002761 394 QPVPPRAMILSRKYRTLVSS---------WIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDA-VGF 463 (883)
Q Consensus 394 i~i~p~~~~~~~~y~~Ll~~---------~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~-~~~ 463 (883)
|.+..+ |..-|-- .+..+....|..-+.=.+++.+-....++.|..||.+-. .+.||. ++|
T Consensus 784 ---p~sg~L----WaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Rav--k~d~d~GD~w 854 (913)
T KOG0495|consen 784 ---PSSGLL----WAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAV--KKDPDNGDAW 854 (913)
T ss_pred ---Cccchh----HHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCccchHH
Confidence 444332 2111110 001111111211122234555556777899999998543 344543 335
Q ss_pred eccchHHHHHHHH-HHhhchHHHHHHHHHH
Q 002761 464 IYSNPMETSFKQR-CLEDGKKYHRKLLRTL 492 (883)
Q Consensus 464 ty~~li~~~l~~~-c~~g~~~~A~~Ll~eM 492 (883)
+.+..+ .+.|..+.-..++...
T Consensus 855 -------a~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 855 -------AWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred -------HHHHHHHHHhCCHHHHHHHHHHH
Confidence 333333 3444444445555444
No 51
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.48 E-value=5.7e-05 Score=87.96 Aligned_cols=241 Identities=15% Similarity=0.084 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-C
Q 002761 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSA-----GV-RPLHET-LIALARLFGSKGLATKGLEILAAMEKI-----N-Y 170 (883)
Q Consensus 104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~-----Gi-~Pd~~t-y~~LI~a~~~~g~~~~A~~l~~~m~~~-----g-~ 170 (883)
..+...|-..|...|+++.|..+++.-.+. |. .|...+ .+.+-..|...+.+.+|..+|..+..- | -
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666889999999999999999886543 31 233333 344667888899999999999988752 2 2
Q ss_pred ChhH--HHHHHHHHHHHCCCHHHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHc---C
Q 002761 171 DIRQ--AWLILVEELVRNKYLEDANKVFLRGAK-----GGL-RATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAA---G 238 (883)
Q Consensus 171 ~pdv--tyn~LI~~y~k~G~~eeA~~lf~~M~~-----~gi-~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~---G 238 (883)
.|.+ +++.|-..|++.|++.+|...+++..+ .|. .|.+ .-++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 3444 788888899999999998888876542 122 2333 45777888899999999999999866432 1
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHchh----CCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHh
Q 002761 239 RMAT----TFHFNHLLSCQATCGIPEVAFATFENMEY----GEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMM 309 (883)
Q Consensus 239 ~~Pd----~~tyn~LI~~y~k~G~~e~A~~lf~~M~~----g~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M 309 (883)
+.++ .-+++.|-..|-+.|++++|.++|++..+ +..+..+ .-...|-|-..|.+.+.+. +|.++|.+-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~---~a~~l~~~~ 435 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE---EAEQLFEEA 435 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc---hHHHHHHHH
Confidence 2222 35789999999999999999999998764 1111122 2456778888998888544 777777763
Q ss_pred HhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761 310 VEDHKRLQPN----VKTYALLVECFTKYCAVTEAIRHFRALQ 347 (883)
Q Consensus 310 ~~~~~gi~Pd----~~Ty~~LI~a~~k~G~~eeA~~lf~~M~ 347 (883)
..-.+-+.|+ ..||..|...|...|+++.|.++.....
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2110123333 3678899999999999999999998876
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.47 E-value=0.00036 Score=76.93 Aligned_cols=255 Identities=17% Similarity=0.099 Sum_probs=199.7
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK 157 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~ 157 (883)
+.-..|+.+.+-..+.+..+.--.++...+-+.-......|+...|..-..++.+.+.. +........++|.+.|++..
T Consensus 127 AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 127 AAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHH
Confidence 34567999999999999987644677788888888899999999999999998876543 56778999999999999999
Q ss_pred HHHHHHHHHHcCCChh-------H-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002761 158 GLEILAAMEKINYDIR-------Q-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229 (883)
Q Consensus 158 A~~l~~~m~~~g~~pd-------v-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~ 229 (883)
...+...|.+.|.-.+ . +|+.+++-....+..+.-...++....+ .+-+...-.+++.-+.+.|+.++|.+
T Consensus 206 ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 206 LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHH
Confidence 9999999999987654 3 7888887777777666666667666542 33455666788889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHh
Q 002761 230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309 (883)
Q Consensus 230 lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M 309 (883)
+..+-.+.+..|+..++ -.+.+-++.+.=.+..+.-.. ..+..| -.+.+|-.-|.+++ .+.+|-..|+.-
T Consensus 285 ~i~~~Lk~~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~-~h~~~p--~L~~tLG~L~~k~~---~w~kA~~~leaA 354 (400)
T COG3071 285 IIEDALKRQWDPRLCRL----IPRLRPGDPEPLIKAAEKWLK-QHPEDP--LLLSTLGRLALKNK---LWGKASEALEAA 354 (400)
T ss_pred HHHHHHHhccChhHHHH----HhhcCCCCchHHHHHHHHHHH-hCCCCh--hHHHHHHHHHHHhh---HHHHHHHHHHHH
Confidence 99999999888872222 234455555554544444331 333445 66778888999999 667888888877
Q ss_pred HhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002761 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348 (883)
Q Consensus 310 ~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~ 348 (883)
.+ .+|+..+|+-+-.+|.+.|+..+|.+++++...
T Consensus 355 l~----~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 355 LK----LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred Hh----cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 65 789999999999999999999999999988764
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=4.5e-05 Score=88.52 Aligned_cols=281 Identities=14% Similarity=0.043 Sum_probs=208.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002761 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG--VRPLHETLIALARLFGSKGLATKGLE 160 (883)
Q Consensus 83 G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~G--i~Pd~~ty~~LI~a~~~~g~~~~A~~ 160 (883)
-+..+|...|...+..- .-+......+-.+|...+++++|.++|+..++.. ..-+..+|++++-.+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 44578999999966542 2233566677788999999999999999987653 223677899888766432 2222
Q ss_pred HHH-HHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761 161 ILA-AMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA-TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238 (883)
Q Consensus 161 l~~-~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~p-d~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G 238 (883)
.+. .+.........+|.++-++|.-.++.+.|.+.|++..+ +.| ..++|+.+-.-+.....++.|...|+....
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 222 23333222224999999999999999999999999887 446 568999888888999999999999987654
Q ss_pred CCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC
Q 002761 239 RMATTFHFNH---LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315 (883)
Q Consensus 239 ~~Pd~~tyn~---LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~g 315 (883)
.|...||+ |--.|.|.++++.|.--|+...+ - -+.+.+.-..+...+-+.| +.++|+++|++...
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--I-NP~nsvi~~~~g~~~~~~k---~~d~AL~~~~~A~~---- 551 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--I-NPSNSVILCHIGRIQHQLK---RKDKALQLYEKAIH---- 551 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--C-CccchhHHhhhhHHHHHhh---hhhHHHHHHHHHHh----
Confidence 46667776 45569999999999999998772 1 1346677777778888889 66699999999875
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761 316 LQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393 (883)
Q Consensus 316 i~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G 393 (883)
+.| |..+----...+...++.++|++.+++++..-..... .|-.+...|-+.|+.+.|+.-|--|....
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~---------v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESS---------VFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHH---------HHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 344 3333333445566789999999999999874333333 36688999999999999999998887665
No 54
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=2.1e-07 Score=67.76 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235 (883)
Q Consensus 202 ~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~ 235 (883)
+|+.||.+|||+||++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888887773
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=0.00015 Score=77.78 Aligned_cols=183 Identities=12% Similarity=0.141 Sum_probs=98.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002761 82 NRDAPRVNDVIYDMIAAGLSPGP------RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155 (883)
Q Consensus 82 ~G~~~~A~~lf~~M~~~G~~pd~------~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~ 155 (883)
.|.++.|.++...+..+ ||. ...-.|-.-|...|-++.|..+|..+...|-- -......|+..|-...+|
T Consensus 82 RGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW 157 (389)
T COG2956 82 RGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREW 157 (389)
T ss_pred cchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHH
Confidence 35566666666655552 321 23334445555566666666666665543311 123445566666666666
Q ss_pred HHHHHHHHHHHHcCCChh---H--HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCChHHHHH
Q 002761 156 TKGLEILAAMEKINYDIR---Q--AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD-LMIAEDCKAGDHSNALE 229 (883)
Q Consensus 156 ~~A~~l~~~m~~~g~~pd---v--tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn-~LI~a~~k~g~~eeA~~ 229 (883)
++|..+-.++.+.+-.+. + .|.-|-..+....+++.|..++.+..+.+ |+.+--+ .+-+.+...|+++.|.+
T Consensus 158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~ 235 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVE 235 (389)
T ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHH
Confidence 666666666655543332 1 35555555555666666666666655432 2222222 23344555666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 230 lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
.++...+.+..--..+...|..+|.+.|+.++....+..+.
T Consensus 236 ~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 236 ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666655444444455666666666666666666665554
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=0.004 Score=69.98 Aligned_cols=337 Identities=13% Similarity=0.050 Sum_probs=204.4
Q ss_pred CCHHHHHHHHHHHHhCCChhhHHHHHHcCCCCChhHHHHHHHHHHccCChH--HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 002761 21 TGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLI--FMEELMQHARNRDAPRVNDVIYDMIAA 98 (883)
Q Consensus 21 pd~~syn~LI~~~~k~g~~~~A~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~--~~~~L~~~~k~G~~~~A~~lf~~M~~~ 98 (883)
+++..|--.+..=-++..+..|..+++. +.....+++ +.+-++.--..|++..|.++|+.-...
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dR--------------Avt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w 170 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDR--------------AVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW 170 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHH--------------HHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 4444555555555666666666555542 221122211 222233444569999999999988754
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCChh--HH
Q 002761 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI-NYDIR--QA 175 (883)
Q Consensus 99 G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~-g~~pd--vt 175 (883)
.|+...|++.|.-=.+-+.++.|..++.+..- +.|++.+|.-..+.=-+.|.+..|+++|...+.. |-.-. ..
T Consensus 171 --~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~l 246 (677)
T KOG1915|consen 171 --EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEIL 246 (677)
T ss_pred --CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 89999999999999999999999999999875 4589888888877777888888888887766542 11000 01
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHH--------------------------------------------HhCCCCCCHHHH
Q 002761 176 WLILVEELVRNKYLEDANKVFLRG--------------------------------------------AKGGLRATDEIY 211 (883)
Q Consensus 176 yn~LI~~y~k~G~~eeA~~lf~~M--------------------------------------------~~~gi~pd~~ty 211 (883)
+++.-.-=.++..++.|.-+|.-. .+. -+-|--+|
T Consensus 247 fvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsW 325 (677)
T KOG1915|consen 247 FVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHH
Confidence 222221111222222222222110 000 11222334
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc-------------------------------------------CCCCCHHHHHH
Q 002761 212 DLMIAEDCKAGDHSNALEIAYEMEAA-------------------------------------------GRMATTFHFNH 248 (883)
Q Consensus 212 n~LI~a~~k~g~~eeA~~lf~~M~~~-------------------------------------------G~~Pd~~tyn~ 248 (883)
--.+.---..|+.+...++|+..... =++-..+||.-
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaK 405 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAK 405 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHH
Confidence 33444444444444444444444432 12223455555
Q ss_pred HHHHHH----HcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHH
Q 002761 249 LLSCQA----TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTY 323 (883)
Q Consensus 249 LI~~y~----k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty 323 (883)
+=-+|+ ++-++..|.+++.... |..|-.-+|..-|..=.+.+.+| .+..++.+-++ +.| |..+|
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AI----G~cPK~KlFk~YIelElqL~efD---RcRkLYEkfle----~~Pe~c~~W 474 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAI----GKCPKDKLFKGYIELELQLREFD---RCRKLYEKFLE----FSPENCYAW 474 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHh----ccCCchhHHHHHHHHHHHHhhHH---HHHHHHHHHHh----cChHhhHHH
Confidence 544554 4566677777766544 55677777777777777777444 66667777765 344 56667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 002761 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 394 (883)
Q Consensus 324 ~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi 394 (883)
.-.-.-=...|+.+.|..+|....+.+....... .|-+.|+-=...|.++.|..+++++++..-
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel-------lwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPEL-------LWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH-------HHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 6666666677888888888888776443111111 477888888899999999999999988764
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.36 E-value=0.00011 Score=85.69 Aligned_cols=242 Identities=14% Similarity=0.079 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-ChhH--HHHHHHHHHHHCCCHHHHHHHHHHHHh-----CC-C
Q 002761 139 HETLIALARLFGSKGLATKGLEILAAMEKI-----NY-DIRQ--AWLILVEELVRNKYLEDANKVFLRGAK-----GG-L 204 (883)
Q Consensus 139 ~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~-----g~-~pdv--tyn~LI~~y~k~G~~eeA~~lf~~M~~-----~g-i 204 (883)
..|...|...|...|+++.|..++....+. |. .|.+ ..+.+-..|...+++.+|..+|+++.. .| .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677999999999999999999988764 32 2333 456677789999999999999999864 12 2
Q ss_pred CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHchh-CCCC
Q 002761 205 RATD-EIYDLMIAEDCKAGDHSNALEIAYEMEA-----AGR-MATTF-HFNHLLSCQATCGIPEVAFATFENMEY-GEDY 275 (883)
Q Consensus 205 ~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~-----~G~-~Pd~~-tyn~LI~~y~k~G~~e~A~~lf~~M~~-g~~g 275 (883)
.|.+ .+++.|-.+|++.|++++|...++...+ .|. .|.+. -++.+...|+..+.+++|..++..... -..-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2333 6888888999999999998887776542 122 22332 356777889999999999998886542 0011
Q ss_pred CCCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc--C--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761 276 MKPD----TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH--K--RLQPN-VKTYALLVECFTKYCAVTEAIRHFRAL 346 (883)
Q Consensus 276 i~pd----~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~--~--gi~Pd-~~Ty~~LI~a~~k~G~~eeA~~lf~~M 346 (883)
+.++ .-+|+.|-..|.+.| +..+|.++|++.+... . +..+. ...++-|-..|.+.+.+++|.++|.+-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~g---k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMG---KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 1222 357999999999999 6669999998876420 1 11222 345677778999999999999999887
Q ss_pred HhC----CC-CCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002761 347 QNY----EG-GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390 (883)
Q Consensus 347 ~~~----~~-~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~ 390 (883)
... |. .|++.. +|..|...|.+.|+++.|.++.+...
T Consensus 436 ~~i~~~~g~~~~~~~~-------~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTY-------TYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHH-------HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 642 21 223322 79999999999999999999998875
No 58
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=0.00071 Score=75.75 Aligned_cols=288 Identities=9% Similarity=-0.008 Sum_probs=209.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV--RPLHETLIALARLFGSKGLAT 156 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi--~Pd~~ty~~LI~a~~~~g~~~ 156 (883)
+-.....+++..=.......|++-+...-+..-.+.-...+++.|..+|++..+... --|..||+.++-.--....+.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 444457788888888888888744444434444444566899999999999988731 126778888775543322222
Q ss_pred -HHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761 157 -KGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEM 234 (883)
Q Consensus 157 -~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M 234 (883)
.|..++ . -..+.| .|+.++-+-|+-.++.+.|...|++..+.+ |. ...|+.|-.-|....+...|.+-++..
T Consensus 317 ~LA~~v~-~--idKyR~-ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 317 YLAQNVS-N--IDKYRP-ETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHH-H--hccCCc-cceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 122211 1 122333 277788889999999999999999988743 44 478999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314 (883)
Q Consensus 235 ~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~ 314 (883)
.+-+ +.|-..|-.|-.+|.-.+...-|+-.|++... --+-|...|.+|-..|.+.+ +.++|++.|.....
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~---~~~eAiKCykrai~--- 460 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLN---RLEEAIKCYKRAIL--- 460 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhc---cHHHHHHHHHHHHh---
Confidence 8864 44888999999999999999999999998762 11448899999999999999 77799999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE-----GGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389 (883)
Q Consensus 315 gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~-----~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M 389 (883)
.-..+...+..|-..|-+.++..+|.+.|..-.+.. ..+..+. .---|-.-+-+.+++++|.......
T Consensus 461 ~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k-------a~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 461 LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK-------ARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH-------HHHHHHHHHHhhcchHHHHHHHHHH
Confidence 334467889999999999999999999998876521 1111110 0112455567778888777655444
No 59
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=0.00019 Score=79.40 Aligned_cols=259 Identities=14% Similarity=0.126 Sum_probs=180.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLV-VAYTLN-GDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI-~a~~~~-g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~ 155 (883)
.+.++|+++.|.+++.-..+..-..-...-|.|- -.|.+. .++..|...-+...... +-|....+.--+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4889999999999998887543222222222222 223333 35666766655443221 11222222222223456899
Q ss_pred HHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761 156 TKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234 (883)
Q Consensus 156 ~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M 234 (883)
+.|.+.+.+.+...-.... .||+=+ .+-+.|++++|+..|-++..- +.-+....-.+.+.|-...+...|.+++-+.
T Consensus 507 dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999999887655544 555433 467789999999999887541 1134455666777888888899998887554
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314 (883)
Q Consensus 235 ~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~ 314 (883)
... ++-|..+.+-|-+.|-+.|+-..|++.+-.-- +-++-|..|...|-.-|.... -.++++.+|++..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtq---f~ekai~y~ekaa---- 653 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQ---FSEKAINYFEKAA---- 653 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhH---HHHHHHHHHHHHH----
Confidence 332 44467888999999999999999998775533 345668888887888888877 5679999999874
Q ss_pred CCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhCC
Q 002761 315 RLQPNVKTYALLVE-CFTKYCAVTEAIRHFRALQNYE 350 (883)
Q Consensus 315 gi~Pd~~Ty~~LI~-a~~k~G~~eeA~~lf~~M~~~~ 350 (883)
-++|+..-|..+|. |+-+.|++.+|+.+++.+.++.
T Consensus 654 liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 654 LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 48999999998886 5567899999999999998654
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.27 E-value=0.00039 Score=76.63 Aligned_cols=227 Identities=13% Similarity=0.021 Sum_probs=155.9
Q ss_pred HcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHH
Q 002761 116 LNGDHEGAMHSLKRELSAG-VRPL--HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDA 192 (883)
Q Consensus 116 ~~g~~~~A~~lf~~M~~~G-i~Pd--~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA 192 (883)
..+..+.++.-+.++.... +.|+ ...|..+-..+.+.|+.+.|...|.+..+........|+.+-..|...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456677888888887543 3333 345777777889999999999999999987654334999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002761 193 NKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271 (883)
Q Consensus 193 ~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~ 271 (883)
...|+...+ +.|+ ..+|..+...+...|++++|.+.|+...+.. |+..........+...++.++|...|.....
T Consensus 118 ~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999987 3454 4788888888999999999999999988753 4433222222334456789999999976541
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhcc-CC--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH-KR--LQP-NVKTYALLVECFTKYCAVTEAIRHFRALQ 347 (883)
Q Consensus 272 g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~-~g--i~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~ 347 (883)
. ..|+...| . ..+...|+.+ ++ +.|..+.+.. .. +.| ...+|..+-..+.+.|++++|...|+...
T Consensus 194 --~-~~~~~~~~-~--~~~~~lg~~~---~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 194 --K-LDKEQWGW-N--IVEFYLGKIS---EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred --h-CCccccHH-H--HHHHHccCCC---HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 13332222 2 2233455443 22 3444554310 01 111 22467788889999999999999999998
Q ss_pred hCCCCCccc
Q 002761 348 NYEGGTKVL 356 (883)
Q Consensus 348 ~~~~~~~~~ 356 (883)
...+...+.
T Consensus 264 ~~~~~~~~e 272 (296)
T PRK11189 264 ANNVYNFVE 272 (296)
T ss_pred HhCCchHHH
Confidence 755444333
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.23 E-value=0.0011 Score=73.12 Aligned_cols=231 Identities=14% Similarity=0.071 Sum_probs=158.2
Q ss_pred cCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002761 82 NRDAPRVNDVIYDMIAAG-LSPG--PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158 (883)
Q Consensus 82 ~G~~~~A~~lf~~M~~~G-~~pd--~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A 158 (883)
.+..+.+..-+.++.... +.|+ ...|..+-..|.+.|+.++|...|++..... +.+...|+.+-..+...|+++.|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345577777777777543 2332 3567778888999999999999999988753 23578899999999999999999
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238 (883)
Q Consensus 159 ~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G 238 (883)
...|+...+.......+|..+...|...|++++|.+.|+...+. .|+..........+...+++++|...|.......
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999999876544448888889999999999999999998874 3544322222222345678999999997755432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC-CCC--CC-CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYG-EDY--MK-PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314 (883)
Q Consensus 239 ~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g-~~g--i~-pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~ 314 (883)
.|+...+ .+. +...|+...+ ..|..+.++ +.. +. .....|..+-..|.+.| +.++|+..|++...
T Consensus 196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g---~~~~A~~~~~~Al~--- 264 (296)
T PRK11189 196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLG---DLDEAAALFKLALA--- 264 (296)
T ss_pred -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH---
Confidence 3332222 222 3335555444 344444410 000 11 13457888999999999 66699999999987
Q ss_pred CCCCCHHHHHHH
Q 002761 315 RLQPNVKTYALL 326 (883)
Q Consensus 315 gi~Pd~~Ty~~L 326 (883)
.-.||.+-+...
T Consensus 265 ~~~~~~~e~~~~ 276 (296)
T PRK11189 265 NNVYNFVEHRYA 276 (296)
T ss_pred hCCchHHHHHHH
Confidence 334566555443
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.22 E-value=0.0013 Score=77.47 Aligned_cols=259 Identities=15% Similarity=0.088 Sum_probs=171.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCC----
Q 002761 113 AYTLNGDHEGAMHSLKRELSAGVRPLHE-TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNK---- 187 (883)
Q Consensus 113 a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~-ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G---- 187 (883)
.+...|++++|++.+..-. +.-+|.. .+......+.+.|+.++|..++..+++++.....-|..|..+..-..
T Consensus 13 il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3467788888888886532 2334544 44566777788888888888888888887543335566666653332
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002761 188 -YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH-SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265 (883)
Q Consensus 188 -~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~-eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~l 265 (883)
..+....+|+++...- |...+.-.+.-.+.....+ ..+...+..+..+|++ .+|+.|-..|.......-...+
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 4666777888776532 3333332232222222223 3445566777788865 4677777777766666666666
Q ss_pred HHHchhC--C----------CCCCCCHHHH--HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHH
Q 002761 266 FENMEYG--E----------DYMKPDTETY--NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECF 330 (883)
Q Consensus 266 f~~M~~g--~----------~gi~pd~~ty--n~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~ 330 (883)
+...... . ..-.|....| .-+...|-..| +.++|++++++.++ ..|+ +-.|..--..|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g---~~~~Al~~Id~aI~----htPt~~ely~~Karil 238 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG---DYEKALEYIDKAIE----HTPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHh----cCCCcHHHHHHHHHHH
Confidence 6654420 0 0123555444 55677788899 55699999999987 5677 45566667889
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 002761 331 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 394 (883)
Q Consensus 331 ~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi 394 (883)
-+.|++.+|....+..+........+ =+-.+.-+.|+|++++|.+++......+.
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyi---------NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYI---------NSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHH---------HHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999998765544333 24567788999999999999999987775
No 63
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.17 E-value=0.016 Score=67.50 Aligned_cols=336 Identities=11% Similarity=0.071 Sum_probs=178.6
Q ss_pred CCCCChhHHHHHHHHHHccCCh------HHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHH
Q 002761 49 HGDSLLSTNGSVVSAAEQGLRL------IFMEELMQHARNRDAPRVNDVIYDMIAA-GLSPGPRSFHGLVVAYTLNGDHE 121 (883)
Q Consensus 49 gv~Pd~~ty~~ll~a~~~~~~~------~~~~~L~~~~k~G~~~~A~~lf~~M~~~-G~~pd~~tyn~LI~a~~~~g~~~ 121 (883)
+..|....|.++=+.+.++-.+ -+..-+....+.|++......|+..... -+......|...|.-.-..|-++
T Consensus 76 ~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPe 155 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPE 155 (835)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChH
Confidence 6677777777776655444211 0111122355778888888888877653 23334456777777777778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CC------------------------
Q 002761 122 GAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI-------NY------------------------ 170 (883)
Q Consensus 122 ~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~-------g~------------------------ 170 (883)
-++.++++.++. ++..-.--|.-+++.+++++|.+.+...+.. |-
T Consensus 156 ts~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln 231 (835)
T KOG2047|consen 156 TSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN 231 (835)
T ss_pred HHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC
Confidence 888888877653 3334555666677777777777766655421 11
Q ss_pred -----------Chh-H--HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH-----------
Q 002761 171 -----------DIR-Q--AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS----------- 225 (883)
Q Consensus 171 -----------~pd-v--tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~e----------- 225 (883)
-+| . .|++|-+-|.+.|+++.|..+|++-...- .++.-|+.+.++|+.-..-.
T Consensus 232 vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~ 309 (835)
T KOG2047|consen 232 VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEE 309 (835)
T ss_pred HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 111 1 45555555666666666666555544321 23334444444444211100
Q ss_pred -----------HHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCC-----
Q 002761 226 -----------NALEIAYEMEAAGR-----------MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP----- 278 (883)
Q Consensus 226 -----------eA~~lf~~M~~~G~-----------~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~p----- 278 (883)
-.+.-|+.+...+. .-++.+|..-+. +..|+..+-..+|.+..+ .+.|
T Consensus 310 ~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~---~vdP~ka~G 384 (835)
T KOG2047|consen 310 SGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK---TVDPKKAVG 384 (835)
T ss_pred ccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH---ccCcccCCC
Confidence 00111111111100 001111111111 112344444455554441 1222
Q ss_pred -CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCc
Q 002761 279 -DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN---VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354 (883)
Q Consensus 279 -d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd---~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~ 354 (883)
-...|..+-.-|-.+| ..+.|..+|.+..+ -..+-- ..+|..--..=.+..+++.|+++.+.....+..+.
T Consensus 385 s~~~Lw~~faklYe~~~---~l~~aRvifeka~~--V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~ 459 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNG---DLDDARVIFEKATK--VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE 459 (835)
T ss_pred ChhhHHHHHHHHHHhcC---cHHHHHHHHHHhhc--CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh
Confidence 1234777778888888 55588888888765 122111 12233333333455677777777666554333222
Q ss_pred cccccCC---------CCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcce
Q 002761 355 VLHNEGN---------FGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM 401 (883)
Q Consensus 355 ~~~~~~~---------~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~ 401 (883)
+...-+. ....|+..++..-..|-++....+|+++....+- +|..+
T Consensus 460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii 514 (835)
T KOG2047|consen 460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQII 514 (835)
T ss_pred hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHH
Confidence 1111111 1117888889888999999999999999999883 66554
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.011 Score=67.06 Aligned_cols=292 Identities=14% Similarity=0.134 Sum_probs=174.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPG-PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE-TLIALARLFGSKGLA 155 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~pd-~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~-ty~~LI~a~~~~g~~ 155 (883)
.+.++|.+++|.+.+.+.... .|| ++.|...-.+|...|+++++.+--.+.++ +.|+.+ .+.---+++-..|++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhccH
Confidence 377899999999999999875 688 88999999999999999988876655443 445422 233333344444444
Q ss_pred HHH----------------------HHHHHHH--------HHcCCChhHHHHHHHHHHHHC------------CC-----
Q 002761 156 TKG----------------------LEILAAM--------EKINYDIRQAWLILVEELVRN------------KY----- 188 (883)
Q Consensus 156 ~~A----------------------~~l~~~m--------~~~g~~pdvtyn~LI~~y~k~------------G~----- 188 (883)
.+| .+++... .+.+-.|...-++.|..|... +.
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~ 279 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA 279 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence 433 2222211 010111211222233333210 00
Q ss_pred HHHHHHHHHHHHhCC----------------CCCCHH---------HHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCC
Q 002761 189 LEDANKVFLRGAKGG----------------LRATDE---------IYDLMIAE--DCKAGDHSNALEIAYEMEAAGRMA 241 (883)
Q Consensus 189 ~eeA~~lf~~M~~~g----------------i~pd~~---------tyn~LI~a--~~k~g~~eeA~~lf~~M~~~G~~P 241 (883)
+.++.+-+..-...| ..++.. .-..++.| +.-.|+.-.|...|+..+.....+
T Consensus 280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~ 359 (606)
T KOG0547|consen 280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF 359 (606)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc
Confidence 111111111110000 001111 11111111 223566677777777777664443
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-H
Q 002761 242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-V 320 (883)
Q Consensus 242 d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~ 320 (883)
+. .|--+-.+|....+.++....|+.... -..-.||+.....= .+.-.+ +.++|..=|++-+. +.|+ .
T Consensus 360 ~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~-ldp~n~dvYyHRgQ--m~flL~---q~e~A~aDF~Kai~----L~pe~~ 428 (606)
T KOG0547|consen 360 NS-LYIKRAAAYADENQSEKMWKDFNKAED-LDPENPDVYYHRGQ--MRFLLQ---QYEEAIADFQKAIS----LDPENA 428 (606)
T ss_pred ch-HHHHHHHHHhhhhccHHHHHHHHHHHh-cCCCCCchhHhHHH--HHHHHH---HHHHHHHHHHHHhh----cChhhh
Confidence 33 266667778888888888888888763 12224455444333 333344 55688888888865 6664 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761 321 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393 (883)
Q Consensus 321 ~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G 393 (883)
..|.-+-.+.-+.+.+++++..|++.+++ +..|++.||..-..+...++++.|.+.|+.-.+.-
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK---------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 56666666777889999999999999864 34566689999999999999999999999876553
No 65
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=0.00047 Score=76.33 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=59.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSP----GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~p----d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~ 154 (883)
|.+...+..|.+.++-....-... -....|.+-..+.+.|.++.|+.-|+...+. .||-.+--.|+-++...|+
T Consensus 247 ~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d 324 (840)
T KOG2003|consen 247 HFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGD 324 (840)
T ss_pred eeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCc
Confidence 777778888888776555431111 1234555666677888888888888776653 5777665555555556788
Q ss_pred HHHHHHHHHHHHHc
Q 002761 155 ATKGLEILAAMEKI 168 (883)
Q Consensus 155 ~~~A~~l~~~m~~~ 168 (883)
-+...+.|..|+..
T Consensus 325 ~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 325 AEKMKEAFQKLIDI 338 (840)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888888753
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.11 E-value=0.011 Score=66.41 Aligned_cols=261 Identities=13% Similarity=-0.034 Sum_probs=161.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTL----NGDHEGAMHSLKRELSAGVRPL-HETLIALARLFGSK 152 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~----~g~~~~A~~lf~~M~~~Gi~Pd-~~ty~~LI~a~~~~ 152 (883)
.+...|+++.|..++++..+.. +.+...++. ...+.. .+....+.+.+.. .....|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence 3556799999999999988753 334445553 222222 3455555555544 2223344 33445666788899
Q ss_pred CCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCChHHHHH
Q 002761 153 GLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL-RATD--EIYDLMIAEDCKAGDHSNALE 229 (883)
Q Consensus 153 g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi-~pd~--~tyn~LI~a~~k~g~~eeA~~ 229 (883)
|++++|...+++..+........+..+-..|...|++++|...+++.....- .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999997644333788899999999999999999998876421 2333 356678888999999999999
Q ss_pred HHHHHHHcCC-CCCHHHH-H--HHHHHHHHcCCHHHHHHH---HHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHH
Q 002761 230 IAYEMEAAGR-MATTFHF-N--HLLSCQATCGIPEVAFAT---FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302 (883)
Q Consensus 230 lf~~M~~~G~-~Pd~~ty-n--~LI~~y~k~G~~e~A~~l---f~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eA 302 (883)
+|+....... .+..... + .++.-+...|....+.+. ...-.....+ ....+..-....++...| +..+|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~---~~~~a 283 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAG---DKDAL 283 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCC---CHHHH
Confidence 9999864432 2222222 2 334444455544433333 2221100011 111122235666777778 56688
Q ss_pred HHHHHHhHhccCCCCC--CH----HHHHHHHH--HHHHcCCHHHHHHHHHHHHh
Q 002761 303 AELLGMMVEDHKRLQP--NV----KTYALLVE--CFTKYCAVTEAIRHFRALQN 348 (883)
Q Consensus 303 l~lf~~M~~~~~gi~P--d~----~Ty~~LI~--a~~k~G~~eeA~~lf~~M~~ 348 (883)
..++..+... ...+ .. .+-..++. ++...|+.++|...+.....
T Consensus 284 ~~~L~~l~~~--~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 284 DKLLAALKGR--ASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHH--HhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888652 1110 11 11122333 56689999999999987764
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.09 E-value=0.046 Score=63.83 Aligned_cols=317 Identities=11% Similarity=0.102 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHcCCC--CChhHHHHHHHHHHccCChHHHHHHH-HHHhcCC------hHHHHHHHH
Q 002761 23 VVPIRSAMSSPEKKTRRKKQQRRQQKHGD--SLLSTNGSVVSAAEQGLRLIFMEELM-QHARNRD------APRVNDVIY 93 (883)
Q Consensus 23 ~~syn~LI~~~~k~g~~~~A~~M~~~gv~--Pd~~ty~~ll~a~~~~~~~~~~~~L~-~~~k~G~------~~~A~~lf~ 93 (883)
-.-|++|.+-|.+.|++++|....+.++. -.+..|+.+.++|+..........+- +-...|+ ++-.+.-|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 46799999999999999999877776543 45556778888876543322222222 1112222 233444455
Q ss_pred HHHHCC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHH
Q 002761 94 DMIAAG-----------LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL------HETLIALARLFGSKGLAT 156 (883)
Q Consensus 94 ~M~~~G-----------~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd------~~ty~~LI~a~~~~g~~~ 156 (883)
.+...+ -+-++.+|..-+.. ..|+..+-...|.+.... +.|- ...|..+-+.|-..|+++
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 544332 12344555554443 356677778888777653 3332 235788888999999999
Q ss_pred HHHHHHHHHHHcCCChh---H-HHHHHHHHHHHCCCHHHHHHHHHHHHhC-----------CCCC------CHHHHHHHH
Q 002761 157 KGLEILAAMEKINYDIR---Q-AWLILVEELVRNKYLEDANKVFLRGAKG-----------GLRA------TDEIYDLMI 215 (883)
Q Consensus 157 ~A~~l~~~m~~~g~~pd---v-tyn~LI~~y~k~G~~eeA~~lf~~M~~~-----------gi~p------d~~tyn~LI 215 (883)
.|+.+|++..+-.+..- . +|..--.+=.+..+++.|+++.+....- +.++ +...|+..+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 99999999988665332 2 6666666667778888888887765321 1111 123455555
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHHHHcC
Q 002761 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAYTRAE 294 (883)
Q Consensus 216 ~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~-~tyn~LI~ay~~~G 294 (883)
+---..|-++....+++.+.+..+..-...-|- -..+-...-+++|++++++=. .---.|++ ..||+-+.-+.+.=
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI--~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQIIINY-AMFLEEHKYFEESFKAYERGI--SLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCC--ccCCCccHHHHHHHHHHHHHHHh
Confidence 555566777888888888887665422222221 111234456788888887644 22224554 35777666665532
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHh
Q 002761 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF--TKYCAVTEAIRHFRALQN 348 (883)
Q Consensus 295 ~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~--~k~G~~eeA~~lf~~M~~ 348 (883)
.--+.+.|..||++.++ |+.|...-+--|+-+= -+.|....|+.+++....
T Consensus 562 gg~klEraRdLFEqaL~---~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD---GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 12267788899999886 7777665444444321 235888888888888653
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.06 E-value=0.0031 Score=74.38 Aligned_cols=290 Identities=12% Similarity=0.027 Sum_probs=193.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-----
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGP-RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG-S----- 151 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~-~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~-~----- 151 (883)
+...|++++|+..+..-... -+|. ..+...-..|.+.|+.++|..++..+... .|+...|...+..+. -
T Consensus 14 l~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 56779999999999775433 3454 45566677888999999999999999986 467777665555554 1
Q ss_pred cCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002761 152 KGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYL-EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEI 230 (883)
Q Consensus 152 ~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~-eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~l 230 (883)
....+.-.++++++...-...+ +...+.-.+..-..+ ..+...+..+..+|++ .+|+.|-.-|....+..-..++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~-~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSD-APRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccHHHHHHHHHHHHHhCcccc-chhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 2256777888888876542222 111121111111122 2455566677778875 4566666667766566666666
Q ss_pred HHHHHHc----C----------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHc
Q 002761 231 AYEMEAA----G----------RMATTFHF--NHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRA 293 (883)
Q Consensus 231 f~~M~~~----G----------~~Pd~~ty--n~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd-~~tyn~LI~ay~~~ 293 (883)
+...... + -.|....| .-|-..|-..|++++|....+.... ..|+ +..|.+-...|-+.
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~----htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE----HTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHC
Confidence 6665432 1 13444444 5556678899999999999997662 2555 56788888889999
Q ss_pred CCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--ccccccCCCCcHH--HH
Q 002761 294 ESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT--KVLHNEGNFGDPL--SL 368 (883)
Q Consensus 294 G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~--~~~~~~~~~~dtY--n~ 368 (883)
| +..+|.+.++..+. +.+ |...=+-....+.++|++++|.+++....+.+..+ ++..+. ..| ..
T Consensus 242 G---~~~~Aa~~~~~Ar~----LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ----c~Wf~~e 310 (517)
T PF12569_consen 242 G---DLKEAAEAMDEARE----LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ----CMWFETE 310 (517)
T ss_pred C---CHHHHHHHHHHHHh----CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH----HHHHHHH
Confidence 9 56688888777765 333 55666667788999999999999999887765422 111100 012 34
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh
Q 002761 369 YLRALCREGRIIELLEALEAMAK 391 (883)
Q Consensus 369 LI~~y~~~G~~~eA~~lf~~M~~ 391 (883)
.-.+|.+.|++..|+..|....+
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 57889999999999988877743
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.00 E-value=0.062 Score=62.99 Aligned_cols=201 Identities=14% Similarity=0.056 Sum_probs=110.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLATK 157 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~~ 157 (883)
+...|+.++|....+.-.+.. ..+.+.|+.+--.+-...++++|++.|+..... .| |...+.-|--.-++.|+++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhh
Confidence 555666677776666555433 245566666665555666777777777665543 33 33444433333345566666
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHH------HHHcCChHHHHHH
Q 002761 158 GLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG-LRATDEIYDLMIAE------DCKAGDHSNALEI 230 (883)
Q Consensus 158 A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~g-i~pd~~tyn~LI~a------~~k~g~~eeA~~l 230 (883)
....-.++.+........|..+.-++--.|....|..+.++..+.. -.|+...|.-...- ..++|.+++|.+.
T Consensus 128 ~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 128 YLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 6666555555433222366666666777777777777777766543 23555555443333 2345555555555
Q ss_pred HHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHH
Q 002761 231 AYEMEAAGRMATTFHF-NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288 (883)
Q Consensus 231 f~~M~~~G~~Pd~~ty-n~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ 288 (883)
+..-... +. |-+.| -+--+.+.+.+++++|..++..+.. ..||.+-|+-.+.
T Consensus 208 L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~----rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 208 LLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLE----RNPDNLDYYEGLE 260 (700)
T ss_pred HHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh----hCchhHHHHHHHH
Confidence 4433322 11 22222 3444556677777777777776662 1455555554433
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.00 E-value=0.04 Score=61.79 Aligned_cols=303 Identities=12% Similarity=-0.043 Sum_probs=174.8
Q ss_pred hcCChHHHHHHHHHHHHCC-CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 002761 81 RNRDAPRVNDVIYDMIAAG-LSPGPRSF-HGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS----KGL 154 (883)
Q Consensus 81 k~G~~~~A~~lf~~M~~~G-~~pd~~ty-n~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~----~g~ 154 (883)
..|+.+.+...+....+.. ..++...- ......+...|++++|..++++..... +-|...+.. ...+.. .+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~ 95 (355)
T cd05804 18 LGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGM 95 (355)
T ss_pred hcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccC
Confidence 3456666665555554322 12232222 222334567899999999999987752 223334442 222222 344
Q ss_pred HHHHHHHHHHHHHcCCChhH--HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002761 155 ATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232 (883)
Q Consensus 155 ~~~A~~l~~~m~~~g~~pdv--tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~ 232 (883)
...+.+.+.. .....|+. ....+...+...|++++|...+++..+.. +.+...+..+-..|...|++++|...+.
T Consensus 96 ~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~ 172 (355)
T cd05804 96 RDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFME 172 (355)
T ss_pred chhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555544 22233433 44455678889999999999999998854 2345778888899999999999999999
Q ss_pred HHHHcCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCC-CCCHHHH-H--HHHHHHHHcCCcccHHHHHHH
Q 002761 233 EMEAAGR-MATT--FHFNHLLSCQATCGIPEVAFATFENMEYGEDYM-KPDTETY-N--CVIQAYTRAESYDRVQDVAEL 305 (883)
Q Consensus 233 ~M~~~G~-~Pd~--~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi-~pd~~ty-n--~LI~ay~~~G~~d~~~eAl~l 305 (883)
......- .|+. ..|..+...|...|++++|..+|++.. .... .+..... + .++.-+...|..+.....-.+
T Consensus 173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~ 250 (355)
T cd05804 173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI--APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDL 250 (355)
T ss_pred hhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh--ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHH
Confidence 8876532 2333 345678889999999999999999976 2221 2222221 2 334444444532211111111
Q ss_pred HHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHH--HHHHHcCCHHHHH
Q 002761 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYL--RALCREGRIIELL 383 (883)
Q Consensus 306 f~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI--~~y~~~G~~~eA~ 383 (883)
...-.....+ ............++...|+.+.|..++..+.......+... .....+-..++ -++.+.|+.++|.
T Consensus 251 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 251 ADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNK--QPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred HHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchh--hhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 1111110001 11112223566688899999999999999875222100000 00000112233 3455889999999
Q ss_pred HHHHHHhhCC
Q 002761 384 EALEAMAKDN 393 (883)
Q Consensus 384 ~lf~~M~~~G 393 (883)
+++..-...+
T Consensus 328 ~~L~~al~~a 337 (355)
T cd05804 328 ELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHH
Confidence 9998875543
No 71
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.0039 Score=73.75 Aligned_cols=363 Identities=12% Similarity=0.083 Sum_probs=212.0
Q ss_pred CHHHHHHHH--HHHHhCCChhhHHHHHHcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 002761 22 GVVPIRSAM--SSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAG 99 (883)
Q Consensus 22 d~~syn~LI--~~~~k~g~~~~A~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G 99 (883)
|.++--+|+ +-|..-|..+.|-+-.+ ..-+...|..+-+.|.+..+++.++.-+++.++.+-..| +++..+.|
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~--~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRA---lR~a~q~~ 799 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQ--FIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARA---LRRAQQNG 799 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHH--HHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHH---HHHHHhCC
Confidence 445555555 34566677777722221 123567789999999999999888877765544333332 33444432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHH
Q 002761 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLIL 179 (883)
Q Consensus 100 ~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~L 179 (883)
- +...-- -......|.+++|..+|++-++ |..|=+.|-..|.+++|.++-+.=-+-.+ ..||..-
T Consensus 800 ~--e~eakv--AvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL--r~Tyy~y 864 (1416)
T KOG3617|consen 800 E--EDEAKV--AVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL--RNTYYNY 864 (1416)
T ss_pred c--chhhHH--HHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh--hhhHHHH
Confidence 1 111111 1122466889999999987654 44555666778899998887553222222 2255555
Q ss_pred HHHHHHCCCHHHHHHHHHHH----------HhCC---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 002761 180 VEELVRNKYLEDANKVFLRG----------AKGG---------LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240 (883)
Q Consensus 180 I~~y~k~G~~eeA~~lf~~M----------~~~g---------i~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~ 240 (883)
-.-+-..++++.|++.|++- .... -..|...|.---.-+-..|.++.|+.+|.....
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 55555567777777766542 1111 012333344344444567888888888876543
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH
Q 002761 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320 (883)
Q Consensus 241 Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~ 320 (883)
|-+++...|-.|+.++|-++-++-. |....-.|.+.|-..| ++.+|..+|.+.+
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~esg--------d~AAcYhlaR~YEn~g---~v~~Av~FfTrAq---------- 994 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEESG--------DKAACYHLARMYENDG---DVVKAVKFFTRAQ---------- 994 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhcc--------cHHHHHHHHHHhhhhH---HHHHHHHHHHHHH----------
Confidence 6678888888999999998887644 6667777888899999 7779999988764
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHH--------HhhC
Q 002761 321 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA--------MAKD 392 (883)
Q Consensus 321 ~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~--------M~~~ 392 (883)
+|...|.-| |.+++++-+.-+..|............|.-+|--..-.+..|-++|.+.+|+++-=+ +..+
T Consensus 995 -afsnAIRlc-KEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 995 -AFSNAIRLC-KENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred -HHHHHHHHH-HhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 344555433 333333322222222210000000011111111223456778899999888876322 2233
Q ss_pred CCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHH
Q 002761 393 NQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWV 448 (883)
Q Consensus 393 Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~ 448 (883)
.+ .+++ -..|+..|.+.+....+|.-.+++|+. +..+.+|.++.
T Consensus 1073 DL--d~~s------Dp~ll~RcadFF~~~~qyekAV~lL~~----ar~~~~AlqlC 1116 (1416)
T KOG3617|consen 1073 DL--DAGS------DPKLLRRCADFFENNQQYEKAVNLLCL----AREFSGALQLC 1116 (1416)
T ss_pred hc--CCCC------CHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 33 2222 346788888888777777777777765 44455555544
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.0061 Score=70.08 Aligned_cols=286 Identities=11% Similarity=0.016 Sum_probs=205.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHH
Q 002761 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILV 180 (883)
Q Consensus 101 ~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI 180 (883)
.-++...-.-..-|-..+++.+.+++++..... .+++...+..-|.++...|+-.+-..+=..|++.-....++|-++-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 344555555566677789999999999988765 4556667777788888888887777777777776544445999998
Q ss_pred HHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHHc
Q 002761 181 EELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAA--G-RMATTFHFNHLLSCQATC 256 (883)
Q Consensus 181 ~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~--G-~~Pd~~tyn~LI~~y~k~ 256 (883)
--|.--|+..+|++.|.+-.. +.|.- ..|-..-.+|+-.|..++|...+...-+. | ..|..+ +---|.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY----lgmey~~t 393 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY----LGMEYMRT 393 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH----HHHHHHHh
Confidence 888888999999999998654 33333 67888889999999999999888765542 2 233332 22347788
Q ss_pred CCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC----CHHHHHHHHHHHHH
Q 002761 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP----NVKTYALLVECFTK 332 (883)
Q Consensus 257 G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P----d~~Ty~~LI~a~~k 332 (883)
+.++.|.+.|.+.. .-.+-|....+-+--...+.+ ...+|..+|+.-+..-+.+-+ -..|++.|-.+|-+
T Consensus 394 ~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~---~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 394 NNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYE---EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred ccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHh---hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 99999999998866 222446667777666666666 555899999887631011112 23456777789999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHH
Q 002761 333 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS 412 (883)
Q Consensus 333 ~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~ 412 (883)
.+.+++|+..|+...... .+..++|+++--.|...|+++.|.+.|++-+-.. |.+++ ...+++
T Consensus 468 l~~~~eAI~~~q~aL~l~---------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~---p~n~~-----~~~lL~ 530 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLS---------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK---PDNIF-----ISELLK 530 (611)
T ss_pred HhhHHHHHHHHHHHHHcC---------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC---CccHH-----HHHHHH
Confidence 999999999999987532 2333478999999999999999999999987654 55554 344555
Q ss_pred HHhh
Q 002761 413 SWIE 416 (883)
Q Consensus 413 ~~~~ 416 (883)
.+++
T Consensus 531 ~aie 534 (611)
T KOG1173|consen 531 LAIE 534 (611)
T ss_pred HHHH
Confidence 4443
No 73
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.93 E-value=0.089 Score=61.65 Aligned_cols=297 Identities=12% Similarity=0.083 Sum_probs=236.3
Q ss_pred hcCChHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 002761 81 RNRDAPRVNDVIYD----MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL--HETLIALARLFGSKGL 154 (883)
Q Consensus 81 k~G~~~~A~~lf~~----M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd--~~ty~~LI~a~~~~g~ 154 (883)
.+|+++.+.+++++ +...|+..+..-|-.=-.+|-..|.+-.+..+.+....-|+.-. ..||+.--..|.+.+.
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 46788888887765 44578888999998888889999999999999988888876542 4589999999999999
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234 (883)
Q Consensus 155 ~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M 234 (883)
++-|+.+|...++--..-...|......=-..|..+.-..+|++.... ++-..+.|-.....+-.+|++..|..++...
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~a 610 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQA 610 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999999998865443348888888777889999999999998874 4445578888888899999999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccC
Q 002761 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314 (883)
Q Consensus 235 ~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~ 314 (883)
.+..-. +...|-+-+..-..+..++.|..+|.+.. . ..|+...|.--+.----.+ ..++|++++++-++
T Consensus 611 f~~~pn-seeiwlaavKle~en~e~eraR~llakar--~--~sgTeRv~mKs~~~er~ld---~~eeA~rllEe~lk--- 679 (913)
T KOG0495|consen 611 FEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR--S--ISGTERVWMKSANLERYLD---NVEEALRLLEEALK--- 679 (913)
T ss_pred HHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh--c--cCCcchhhHHHhHHHHHhh---hHHHHHHHHHHHHH---
Confidence 877533 77889999999999999999999999877 3 3556666654444444455 56799999999886
Q ss_pred CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761 315 RLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393 (883)
Q Consensus 315 gi~Pd~~-Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G 393 (883)
.-|+-. .|..+-..+-..++++.|...|..=.+.- |..+. .|-.|...=-+.|.+..|..+|++-+-++
T Consensus 680 -~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--P~~ip-------LWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 680 -SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--PNSIP-------LWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred -hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--CCCch-------HHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 457754 45555568889999999999887665432 22222 47888888899999999999999998887
Q ss_pred CCCCCccee
Q 002761 394 QPVPPRAMI 402 (883)
Q Consensus 394 i~i~p~~~~ 402 (883)
|.+..+
T Consensus 750 ---Pk~~~l 755 (913)
T KOG0495|consen 750 ---PKNALL 755 (913)
T ss_pred ---CCcchh
Confidence 666655
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.0009 Score=71.90 Aligned_cols=230 Identities=11% Similarity=0.058 Sum_probs=164.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHH
Q 002761 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAW-LILVEELVR 185 (883)
Q Consensus 107 yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvty-n~LI~~y~k 185 (883)
=+.|-.+|.+.|.+.+|.+.|+.-... .|-..||-.|-++|.+..+...|+.+|.+-... ++-++|| .-+-..+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 366778888888888888888776554 566678888888888888888888888877664 3445544 445566777
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002761 186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265 (883)
Q Consensus 186 ~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~l 265 (883)
.++.++|.++|+...+.. ..++.+..++-.+|.-.++++-|+..++.+.+.|+. +...|+.+--+|.-.+.++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 788888888888877642 234566667777888888888888888888888876 666777777777777888888887
Q ss_pred HHHchhCCCCCCCCH--HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002761 266 FENMEYGEDYMKPDT--ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343 (883)
Q Consensus 266 f~~M~~g~~gi~pd~--~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf 343 (883)
|.+.. .---.|+. -.|-.+-......| +..-|.+.|+-... .-.-+...+|.|----.+.|++++|..++
T Consensus 381 f~RAl--stat~~~~aaDvWYNlg~vaV~iG---D~nlA~rcfrlaL~---~d~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 381 FQRAL--STATQPGQAADVWYNLGFVAVTIG---DFNLAKRCFRLALT---SDAQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred HHHHH--hhccCcchhhhhhhccceeEEecc---chHHHHHHHHHHhc---cCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 77655 22223433 23545555566677 44477777776664 22335778887777777889999999888
Q ss_pred HHHHhC
Q 002761 344 RALQNY 349 (883)
Q Consensus 344 ~~M~~~ 349 (883)
......
T Consensus 453 ~~A~s~ 458 (478)
T KOG1129|consen 453 NAAKSV 458 (478)
T ss_pred HHhhhh
Confidence 887653
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00067 Score=72.86 Aligned_cols=218 Identities=16% Similarity=0.080 Sum_probs=124.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 002761 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IALARLFGSKGLATKGL 159 (883)
Q Consensus 81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty-~~LI~a~~~~g~~~~A~ 159 (883)
+.|.+.+|.+.|..-... .|-+.||-.|-.+|.+-.++..|+.+|.+-.. ..|-.+|| .-..+.+-..++.++|.
T Consensus 235 rLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~~~~~a~ 310 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAMEQQEDAL 310 (478)
T ss_pred HhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHHhHHHHH
Confidence 345556666666655544 45555666666666666666666666665433 24544554 33445555566666666
Q ss_pred HHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761 160 EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238 (883)
Q Consensus 160 ~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G 238 (883)
++++...+... .++ ...++-.+|.-.++++-|++.|+++.+.|+ -+...|+.+--+|.-.++++-++.-|......-
T Consensus 311 ~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 311 QLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred HHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 66666665432 223 444455556666666666666666666665 344556655555666666666666666665544
Q ss_pred CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761 239 RMATT--FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310 (883)
Q Consensus 239 ~~Pd~--~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~ 310 (883)
-.|+. .+|-.|-......|++..|.+.|+-... .-.-+..++|.|----.+.| ++++|..+++...
T Consensus 389 t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~---~d~~h~ealnNLavL~~r~G---~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 389 TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT---SDAQHGEALNNLAVLAARSG---DILGARSLLNAAK 456 (478)
T ss_pred cCcchhhhhhhccceeEEeccchHHHHHHHHHHhc---cCcchHHHHHhHHHHHhhcC---chHHHHHHHHHhh
Confidence 43432 2344444555556666666666665541 11223455666665566666 4446666666544
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.87 E-value=0.0038 Score=72.81 Aligned_cols=195 Identities=15% Similarity=0.111 Sum_probs=145.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 002761 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD 223 (883)
Q Consensus 144 ~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~ 223 (883)
..|.+......+.+|..+++.+....... --|.-+-+-|+..|+++.|.++|-+- -.++-.|..|.++|+
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~s-~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTAS-GYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhcccc-ccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 34555666778889999988877654311 14667778899999999999999763 346778889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHH
Q 002761 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303 (883)
Q Consensus 224 ~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl 303 (883)
++.|.++-.+. .|....++.|-+-..-+-+.|++.+|.++|-.+. .|+.. |..|-++|..| +.+
T Consensus 807 w~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~------~p~~a-----iqmydk~~~~d---dmi 870 (1636)
T KOG3616|consen 807 WEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG------EPDKA-----IQMYDKHGLDD---DMI 870 (1636)
T ss_pred HHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc------CchHH-----HHHHHhhCcch---HHH
Confidence 99998886544 4555667778777777889999999999998887 77754 78899999554 777
Q ss_pred HHHHHhHhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHH
Q 002761 304 ELLGMMVEDHKRLQPN--VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381 (883)
Q Consensus 304 ~lf~~M~~~~~gi~Pd--~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~e 381 (883)
++..+-. |+ ..|...+-.-|-..|++..|...|-+... |.+-+++|-..+.+++
T Consensus 871 rlv~k~h-------~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-----------------~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 871 RLVEKHH-------GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-----------------FKAAVNMYKASELWED 926 (1636)
T ss_pred HHHHHhC-------hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-----------------HHHHHHHhhhhhhHHH
Confidence 7766542 33 34555666777788999999988866643 6677888888888888
Q ss_pred HHHHHHH
Q 002761 382 LLEALEA 388 (883)
Q Consensus 382 A~~lf~~ 388 (883)
|.++-+.
T Consensus 927 ayriakt 933 (1636)
T KOG3616|consen 927 AYRIAKT 933 (1636)
T ss_pred HHHHHhc
Confidence 8876543
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.85 E-value=0.00054 Score=75.20 Aligned_cols=149 Identities=16% Similarity=0.082 Sum_probs=76.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 002761 148 LFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK----AG 222 (883)
Q Consensus 148 a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k----~g 222 (883)
.+...|++++|++++..- .+. .....|..|.+.++++.|.+.|+.|.+. ..|. +...+..++.. ..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCch
Confidence 344456666666655421 112 4445566666666666666666666653 2332 22223333322 23
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHH
Q 002761 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302 (883)
Q Consensus 223 ~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eA 302 (883)
.+.+|..+|+++... +.++..+.|.+..++...|++++|.+++.+.. ... +.|..+...+|......|.. .+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al--~~~-~~~~d~LaNliv~~~~~gk~--~~~~ 255 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL--EKD-PNDPDTLANLIVCSLHLGKP--TEAA 255 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC--CC--CCHHHHHHHHHHHHHHTT-T--CHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH--Hhc-cCCHHHHHHHHHHHHHhCCC--hhHH
Confidence 466666666665443 44566666666666666666666666666544 111 22344444555555555532 1455
Q ss_pred HHHHHHhHh
Q 002761 303 AELLGMMVE 311 (883)
Q Consensus 303 l~lf~~M~~ 311 (883)
-+++.++..
T Consensus 256 ~~~l~qL~~ 264 (290)
T PF04733_consen 256 ERYLSQLKQ 264 (290)
T ss_dssp HHHHHHCHH
T ss_pred HHHHHHHHH
Confidence 566666665
No 78
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.84 E-value=2.1e-05 Score=56.55 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002761 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138 (883)
Q Consensus 105 ~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd 138 (883)
++||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999887
No 79
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.82 E-value=0.0048 Score=76.95 Aligned_cols=213 Identities=13% Similarity=0.072 Sum_probs=165.5
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761 161 ILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT-----DEIYDLMIAEDCKAGDHSNALEIAYEME 235 (883)
Q Consensus 161 l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd-----~~tyn~LI~a~~k~g~~eeA~~lf~~M~ 235 (883)
=|.+++.........|-..|.-....++++.|++++++.... |.+. ...|.++++.-.-.|.-+...++|++..
T Consensus 1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 345555544333348888888889999999999999988653 2111 2577888887777788888889999888
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC
Q 002761 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315 (883)
Q Consensus 236 ~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~g 315 (883)
+.. . -..+|..|...|.+.+..++|-++|+.|.+ .+.-....|...+..+.++. +.+.|..++.+..+
T Consensus 1525 qyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~K---KF~q~~~vW~~y~~fLl~~n---e~~aa~~lL~rAL~---- 1592 (1710)
T KOG1070|consen 1525 QYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLK---KFGQTRKVWIMYADFLLRQN---EAEAARELLKRALK---- 1592 (1710)
T ss_pred Hhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHH---HhcchhhHHHHHHHHHhccc---HHHHHHHHHHHHHh----
Confidence 753 1 245788999999999999999999999983 23346778999999999999 88899999999876
Q ss_pred CCCC--HHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761 316 LQPN--VKTY-ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392 (883)
Q Consensus 316 i~Pd--~~Ty-~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~ 392 (883)
+-|- .+-+ .-....-.+.|+.+.+..+|+..... |.+.-|.|+..|++=.++|..+.+..+|++....
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a---------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA---------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh---------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 4454 3222 33445566899999999999988753 4455568999999999999999999999999999
Q ss_pred CCC
Q 002761 393 NQP 395 (883)
Q Consensus 393 Gi~ 395 (883)
++.
T Consensus 1664 ~l~ 1666 (1710)
T KOG1070|consen 1664 KLS 1666 (1710)
T ss_pred CCC
Confidence 983
No 80
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.82 E-value=2.4e-05 Score=56.28 Aligned_cols=33 Identities=36% Similarity=0.483 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 002761 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT 242 (883)
Q Consensus 210 tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd 242 (883)
+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666655
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.80 E-value=0.001 Score=73.12 Aligned_cols=248 Identities=15% Similarity=0.100 Sum_probs=157.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK 157 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~ 157 (883)
.+.-.|++..+..-.+ .....-.......--+.++|...|+.+.++ .+.... -.|.......+...+....+-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 4455677777776555 222111112344556778888889877654 333333 36666666555444433344444
Q ss_pred HHHHHHHHHHcCCC-hhHHHH-HHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761 158 GLEILAAMEKINYD-IRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235 (883)
Q Consensus 158 A~~l~~~m~~~g~~-pdvtyn-~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~ 235 (883)
+..-+......... .+.++. ..-..|...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444333333322 222222 2234567789999999988653 456777889999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761 236 AAGRMATTFHFNHLLSCQA----TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311 (883)
Q Consensus 236 ~~G~~Pd~~tyn~LI~~y~----k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~ 311 (883)
+.. .|. +..-|..++. -...+.+|..+|+++. ..+.++..+.|.+..++...| +.++|.+++.+...
T Consensus 159 ~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~---~~~~~t~~~lng~A~~~l~~~---~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 159 QID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELS---DKFGSTPKLLNGLAVCHLQLG---HYEEAEELLEEALE 229 (290)
T ss_dssp CCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHH---CCS--SHHHHHHHHHHHHHCT----HHHHHHHHHHHCC
T ss_pred hcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH
Confidence 753 343 3333444443 3347999999999998 345678899999999999999 66699999988764
Q ss_pred ccCCCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhC
Q 002761 312 DHKRLQP-NVKTYALLVECFTKYCAV-TEAIRHFRALQNY 349 (883)
Q Consensus 312 ~~~gi~P-d~~Ty~~LI~a~~k~G~~-eeA~~lf~~M~~~ 349 (883)
..| |..|...+|.+....|+. +.+.+++..++..
T Consensus 230 ----~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 230 ----KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp ----C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ----hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 234 456777788888899988 6788899888753
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.78 E-value=0.0052 Score=63.69 Aligned_cols=187 Identities=12% Similarity=0.009 Sum_probs=113.7
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLAT 156 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~ 156 (883)
.|...|+...|..-++...+.. +-+..+|..+-..|-+.|..+.|.+-|++..+. .| +....|.--.-+|..|.++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCChH
Confidence 4666677777777777766653 234456666667777777777777777665543 23 3444555555566667777
Q ss_pred HHHHHHHHHHHcCCChh--HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHH
Q 002761 157 KGLEILAAMEKINYDIR--QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYE 233 (883)
Q Consensus 157 ~A~~l~~~m~~~g~~pd--vtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~ 233 (883)
+|.+.|++....-.-+. .+|..+.-+..+.|+.+.|...|.+-.+.. |+. .+.-.+.....+.|++-.|...++.
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 77777766665432222 266666666666677777777776665532 332 4455566666666777777666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 234 M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
....+. ++..+.-..|..--..|+.+.|.+.=..+.
T Consensus 199 ~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 199 YQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 666554 566666556666666666666655544444
No 83
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.014 Score=67.13 Aligned_cols=258 Identities=10% Similarity=0.035 Sum_probs=199.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK 157 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~ 157 (883)
.+...+++....++++...+.. +++...+..=|.++...|+..+-+.+=.+|... .+-...+|-++---|-..|...+
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 3667889999999999998765 566677777788999999888877777777664 34467889998888888899999
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761 158 GLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG--GL-RATDEIYDLMIAEDCKAGDHSNALEIAYEM 234 (883)
Q Consensus 158 A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~--gi-~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M 234 (883)
|++.|.............|-.+-+.|+-.|.-+.|...+...-+. |. .|. .|.. --|.+.+..+.|.+.|.+.
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LYlg--mey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LYLG--MEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HHHH--HHHHHhccHHHHHHHHHHH
Confidence 999999887665444458999999999999999999988775541 22 232 2222 3477889999999999887
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCC----CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM----KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310 (883)
Q Consensus 235 ~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi----~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~ 310 (883)
... .+-|..+.+-+--..-+.+.+.+|...|......-+.+ ..-..+++-|-.+|.+.+ +.++|+..|++.+
T Consensus 407 ~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~---~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 407 LAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN---KYEEAIDYYQKAL 482 (611)
T ss_pred Hhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh---hHHHHHHHHHHHH
Confidence 654 34467788888777788899999999998765200011 123456888888999999 6679999999988
Q ss_pred hccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002761 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348 (883)
Q Consensus 311 ~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~ 348 (883)
. -..-|..|+.++--.|...|+++.|...|.+..-
T Consensus 483 ~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 483 L---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred H---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 6 3445788888888899999999999999988763
No 84
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.74 E-value=0.021 Score=66.86 Aligned_cols=137 Identities=14% Similarity=0.159 Sum_probs=68.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC
Q 002761 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295 (883)
Q Consensus 216 ~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~ 295 (883)
.+...+..+.+|+.+++.++..... .--|.-+.+.|+..|+++.|.++|.+-- .++--|..|.++|
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~~- 805 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKAG- 805 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhccc-
Confidence 3344455566666666655544321 1224445556666666666666665432 1334455666666
Q ss_pred cccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHH
Q 002761 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 375 (883)
Q Consensus 296 ~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~ 375 (883)
++++|+++-.+- .|.......|.+-..-+-+.|++.+|.+++-.+.. | ...|.+|-+
T Consensus 806 --kw~da~kla~e~----~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p-------------~~aiqmydk 862 (1636)
T KOG3616|consen 806 --KWEDAFKLAEEC----HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----P-------------DKAIQMYDK 862 (1636)
T ss_pred --cHHHHHHHHHHh----cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----c-------------hHHHHHHHh
Confidence 555666554433 23333344444444445555666666655533221 0 134555566
Q ss_pred cCCHHHHHHHHHHH
Q 002761 376 EGRIIELLEALEAM 389 (883)
Q Consensus 376 ~G~~~eA~~lf~~M 389 (883)
+|..++.+++.++-
T Consensus 863 ~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 863 HGLDDDMIRLVEKH 876 (1636)
T ss_pred hCcchHHHHHHHHh
Confidence 66655555555443
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.69 E-value=0.023 Score=59.01 Aligned_cols=207 Identities=15% Similarity=0.053 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 002761 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELV 184 (883)
Q Consensus 106 tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~ 184 (883)
+.--|--+|.+.|+...|..-+++.++. .| +..+|..+...|-+.|..+.|.+-|+...+.......+.|..-..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 3445556788888888888888877764 34 34567777778888888888888888887765433337777777788
Q ss_pred HCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002761 185 RNKYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263 (883)
Q Consensus 185 k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~ 263 (883)
..|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|...|++-.+..-. ...+.-.+-...-+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 88888888888887766422222 256777777777788888888888877765322 3445566677777778888888
Q ss_pred HHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH
Q 002761 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325 (883)
Q Consensus 264 ~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~ 325 (883)
..++... ..+. ++..+.---|.---..| +...+-+.=.++.+ .-|...-|..
T Consensus 194 ~~~~~~~--~~~~-~~A~sL~L~iriak~~g---d~~~a~~Y~~qL~r----~fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQ--QRGG-AQAESLLLGIRIAKRLG---DRAAAQRYQAQLQR----LFPYSEEYQT 245 (250)
T ss_pred HHHHHHH--hccc-ccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHH----hCCCcHHHHh
Confidence 7777776 3333 66666666666666666 33355444444433 4455554443
No 86
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.66 E-value=6e-05 Score=54.17 Aligned_cols=33 Identities=24% Similarity=0.502 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002761 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP 137 (883)
Q Consensus 105 ~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P 137 (883)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 87
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.2 Score=56.79 Aligned_cols=383 Identities=11% Similarity=0.034 Sum_probs=249.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002761 82 NRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161 (883)
Q Consensus 82 ~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l 161 (883)
.+++..|.++|++..... ..+...|--.+..=.++..+..|..++++....=...|. .|---+..=-..|++..|+++
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHH
Confidence 567789999999998766 567778888888888999999999999997764222232 233344444567999999999
Q ss_pred HHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CC
Q 002761 162 LAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA-GR 239 (883)
Q Consensus 162 ~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~-G~ 239 (883)
|.+-.. ..|+. .|++.|+.=.+-..++.|..+++...- +.|++.+|---..-=-++|....|..+|....+. |-
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 998876 57888 999999999999999999999999986 5699999998888888999999999999877653 21
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC--HHHHHHHHHHHHHcCCcccHHHHHHH-----HHHhHh
Q 002761 240 -MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD--TETYNCVIQAYTRAESYDRVQDVAEL-----LGMMVE 311 (883)
Q Consensus 240 -~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd--~~tyn~LI~ay~~~G~~d~~~eAl~l-----f~~M~~ 311 (883)
.-+...|++....=.++..++.|.-+|.-.. ..++.+ ...|.....-=-+-|+..-+++++-- +..+++
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl---d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYAL---DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 1123445555555567888999999987655 223333 44455444444445544455565532 333443
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHH--------HHHcCCHHHHH
Q 002761 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA--------LCREGRIIELL 383 (883)
Q Consensus 312 ~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~--------y~~~G~~~eA~ 383 (883)
.-.-|--||--.+.--...|+.+...++|+..... ++|.... ..|--.|-. =....+.+.+.
T Consensus 317 ---~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ek------r~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 317 ---KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEK------RYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred ---hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHH------HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 22346667777777777889999999999988743 2221111 022222222 23457788888
Q ss_pred HHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccce
Q 002761 384 EALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGF 463 (883)
Q Consensus 384 ~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ 463 (883)
++|...+. + +|....+ +..+-- +.+.+-...-.+..|.+.+. ...|..|-...|
T Consensus 387 ~vyq~~l~--l-IPHkkFt----FaKiWl-----------------myA~feIRq~~l~~ARkiLG--~AIG~cPK~KlF 440 (677)
T KOG1915|consen 387 QVYQACLD--L-IPHKKFT----FAKIWL-----------------MYAQFEIRQLNLTGARKILG--NAIGKCPKDKLF 440 (677)
T ss_pred HHHHHHHh--h-cCcccch----HHHHHH-----------------HHHHHHHHHcccHHHHHHHH--HHhccCCchhHH
Confidence 88888876 2 2443332 222111 12222233555666777765 356778876444
Q ss_pred eccchHHHHHHHHHHhhchHHHHHHHHHHhcCCCccccCCChhHHHHHHHHHHh
Q 002761 464 IYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKK 517 (883)
Q Consensus 464 ty~~li~~~l~~~c~~g~~~~A~~Ll~eM~~~G~~~lls~~~~~~~~vi~~l~k 517 (883)
.+.|--=-+.+.++...+|++.-.+-+..-. ..|..|..+-..|..
T Consensus 441 ------k~YIelElqL~efDRcRkLYEkfle~~Pe~c--~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 441 ------KGYIELELQLREFDRCRKLYEKFLEFSPENC--YAWSKYAELETSLGD 486 (677)
T ss_pred ------HHHHHHHHHHhhHHHHHHHHHHHHhcChHhh--HHHHHHHHHHHHhhh
Confidence 1222222344667888888887765554310 146666666444443
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.18 Score=60.37 Aligned_cols=229 Identities=13% Similarity=0.051 Sum_probs=149.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C--------CCCCHHHHHHHHHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA-G--------VRPLHETLIALARLF 149 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~-G--------i~Pd~~ty~~LI~a~ 149 (883)
|.-.|+.+.|.+-..-++. ...|..|-+.|.+..+++-|.-.+..|... | -.|+ .+-.-+.-..
T Consensus 738 yvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 5667999999888877663 478999999999988888887777776522 1 1222 2222222233
Q ss_pred HhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002761 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229 (883)
Q Consensus 150 ~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~ 229 (883)
...|.+++|+.+|++-.+. ..|=..|-..|++++|.++-+.=-+-.++ .||..-..-+-..++.+.|++
T Consensus 811 ieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHH
Confidence 5678899999999887664 34445677789999999887653322221 455555555556677777777
Q ss_pred HHHHHH----------HcC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHH
Q 002761 230 IAYEME----------AAG---------RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 290 (883)
Q Consensus 230 lf~~M~----------~~G---------~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay 290 (883)
.|+.-. ... -..|...|.---..+-..|.++.|..+|...+ -|-+++...
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----------D~fs~VrI~ 948 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----------DYFSMVRIK 948 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----------hhhhheeeE
Confidence 766421 111 11133333333333445688888888877666 255677777
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347 (883)
Q Consensus 291 ~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~ 347 (883)
|-.| +.++|-++-++- -|....-.|-..|-..|++.+|..+|-...
T Consensus 949 C~qG---k~~kAa~iA~es--------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 949 CIQG---KTDKAARIAEES--------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eecc---CchHHHHHHHhc--------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8888 555776664442 255666677788888888888888887775
No 89
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.59 E-value=8.5e-05 Score=53.38 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 002761 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA 241 (883)
Q Consensus 209 ~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~P 241 (883)
.|||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345555555555555555555555555555544
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.59 E-value=0.11 Score=66.12 Aligned_cols=304 Identities=13% Similarity=0.017 Sum_probs=190.3
Q ss_pred HHhcCChHHHHHHHHHHHHCC--C----CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAG--L----SPGPR--SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH----ETLIALA 146 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G--~----~pd~~--tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~----~ty~~LI 146 (883)
+...|++++|..++......- . .+... ....+-..+...|++++|...+++....--..+. .+.+.+-
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 456788999998888775421 0 11111 1222233456789999999999887653111222 2345566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCChh-H-HHHHHHHHHHHCCCHHHHHHHHHHHHh----CCCC--C-CHHHHHH
Q 002761 147 RLFGSKGLATKGLEILAAMEKI----NYDIR-Q-AWLILVEELVRNKYLEDANKVFLRGAK----GGLR--A-TDEIYDL 213 (883)
Q Consensus 147 ~a~~~~g~~~~A~~l~~~m~~~----g~~pd-v-tyn~LI~~y~k~G~~eeA~~lf~~M~~----~gi~--p-d~~tyn~ 213 (883)
..+...|+++.|...+.+.... |-... . +++.+-..+...|+++.|...+++... .+.. + ....+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 6677899999999999887643 22111 2 556667788899999999999887654 2221 1 2344555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHchh--CCCCCCCCHHHH--HH
Q 002761 214 MIAEDCKAGDHSNALEIAYEMEAA--GRMA--TTFHFNHLLSCQATCGIPEVAFATFENMEY--GEDYMKPDTETY--NC 285 (883)
Q Consensus 214 LI~a~~k~g~~eeA~~lf~~M~~~--G~~P--d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~--g~~gi~pd~~ty--n~ 285 (883)
+...+...|++++|...+.+.... ...+ ....+..+...+...|+.+.|.+.+..... ...+........ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 666677889999999999887542 1112 233445566678899999999999888752 011111111011 11
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCccccc
Q 002761 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK---TYALLVECFTKYCAVTEAIRHFRALQNY----EGGTKVLHN 358 (883)
Q Consensus 286 LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~---Ty~~LI~a~~k~G~~eeA~~lf~~M~~~----~~~~~~~~~ 358 (883)
.+..+...| ..+.|..++..... ........ .+..+..++...|+.++|..++...... +......
T Consensus 659 ~~~~~~~~g---~~~~A~~~l~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a-- 731 (903)
T PRK04841 659 RLIYWQMTG---DKEAAANWLRQAPK--PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN-- 731 (903)
T ss_pred HHHHHHHCC---CHHHHHHHHHhcCC--CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH--
Confidence 224455577 55678777766543 11111111 1345556788899999999999988642 1111111
Q ss_pred cCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 002761 359 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 394 (883)
Q Consensus 359 ~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi 394 (883)
.++..+-.+|.+.|+.++|...+.+..+..-
T Consensus 732 -----~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 732 -----RNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 1355667788899999999999999987653
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.2 Score=54.94 Aligned_cols=405 Identities=10% Similarity=0.051 Sum_probs=211.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG---- 153 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g---- 153 (883)
.+.+.|++++|..++.-+.... .|+...+-.|-.++.-.|.+.+|..+-... .-+.-.-..|++.--+.+
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHH
Confidence 4667899999999999888754 566666666666666677777777654331 112222222222323333
Q ss_pred --------------------------CHHHHHHHHHHHHHcCCChhHHHH-HHHHHHHHCCCHHHHHHHHHHHHhCCCCC
Q 002761 154 --------------------------LATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRA 206 (883)
Q Consensus 154 --------------------------~~~~A~~l~~~m~~~g~~pdvtyn-~LI~~y~k~G~~eeA~~lf~~M~~~gi~p 206 (883)
.+.+|..++.+....+...- ..| .|--+|.+..-++-+.+++.--.+. ++-
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~-alNVy~ALCyyKlDYydvsqevl~vYL~q-~pd 217 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI-ALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPD 217 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh-hhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCC
Confidence 34455555555544322111 222 1223555666666666666555442 222
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------------------CCCCH-----HHHHHHHHHHHH
Q 002761 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG--------------------------RMATT-----FHFNHLLSCQAT 255 (883)
Q Consensus 207 d~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G--------------------------~~Pd~-----~tyn~LI~~y~k 255 (883)
+...-|.......+.=.-..|..-.+++.+.+ +-|.. ..--.|+--|.+
T Consensus 218 StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~ 297 (557)
T KOG3785|consen 218 STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN 297 (557)
T ss_pred cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc
Confidence 23444544443333211111222222222211 01110 111234445778
Q ss_pred cCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHH--HHHcC----CcccHHHHHHHHHHhHhccCCCCCCHHH-HHHHHH
Q 002761 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA--YTRAE----SYDRVQDVAELLGMMVEDHKRLQPNVKT-YALLVE 328 (883)
Q Consensus 256 ~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~a--y~~~G----~~d~~~eAl~lf~~M~~~~~gi~Pd~~T-y~~LI~ 328 (883)
.+++.+|..+...+. +.+..-| ++.| ++..| .-+...-|.+.|+-.-+ ++..-|.+. -.++.+
T Consensus 298 q~dVqeA~~L~Kdl~------PttP~Ey--ilKgvv~aalGQe~gSreHlKiAqqffqlVG~--Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 298 QNDVQEAISLCKDLD------PTTPYEY--ILKGVVFAALGQETGSREHLKIAQQFFQLVGE--SALECDTIPGRQSMAS 367 (557)
T ss_pred cccHHHHHHHHhhcC------CCChHHH--HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc--cccccccccchHHHHH
Confidence 888888888887776 3333223 2332 22222 22233345555543333 444444332 245556
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHH
Q 002761 329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYR 408 (883)
Q Consensus 329 a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~ 408 (883)
++.-.-.+++.+-+++.+........... | .+..+++..|++.+|.++|-+.....+ .+..+ |.
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn--------~-N~AQAk~atgny~eaEelf~~is~~~i--kn~~~-----Y~ 431 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFN--------L-NLAQAKLATGNYVEAEELFIRISGPEI--KNKIL-----YK 431 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhh--------h-HHHHHHHHhcChHHHHHHHhhhcChhh--hhhHH-----HH
Confidence 66666778888888888776444333331 2 467899999999999999987744433 33332 44
Q ss_pred HHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHH-HhhchHHHHH
Q 002761 409 TLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRC-LEDGKKYHRK 487 (883)
Q Consensus 409 ~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c-~~g~~~~A~~ 487 (883)
++ |++...+.|..+-|+.++-.+ .-.. ..| +|+ .+|..-| +.+.+-.|.+
T Consensus 432 s~--------------------LArCyi~nkkP~lAW~~~lk~---~t~~--e~f---sLL-qlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 432 SM--------------------LARCYIRNKKPQLAWDMMLKT---NTPS--ERF---SLL-QLIANDCYKANEFYYAAK 482 (557)
T ss_pred HH--------------------HHHHHHhcCCchHHHHHHHhc---CCch--hHH---HHH-HHHHHHHHHHHHHHHHHH
Confidence 43 445555588888888877432 2211 224 122 2333334 4566778888
Q ss_pred HHHHHhcCCCccccC-CChhHHHHHHHHHHhhhcCCCccccCcccchHHHHHHHHHHHhhCCCCChhhHH
Q 002761 488 LLRTLQNEGPAVLGD-VSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRN 556 (883)
Q Consensus 488 Ll~eM~~~G~~~lls-~~~~~~~~vi~~l~k~gk~~~~~v~K~~g~S~~ev~~l~~ef~~~g~~~~~~~~ 556 (883)
-|+++......|--. |......-+...++.. |..+.-...+.+.+|-+...+ +.++.-
T Consensus 483 AFd~lE~lDP~pEnWeGKRGACaG~f~~l~~~---------~~~~~p~~~~rEVvhllr~~~--nsq~E~ 541 (557)
T KOG3785|consen 483 AFDELEILDPTPENWEGKRGACAGLFRQLANH---------KTDPIPISQMREVVHLLRMKP--NSQCEF 541 (557)
T ss_pred hhhHHHccCCCccccCCccchHHHHHHHHHcC---------CCCCCchhHHHHHHHHHHhCC--CchHHH
Confidence 888887777666222 3334445555555541 222233445666777666555 444444
No 92
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.014 Score=66.15 Aligned_cols=222 Identities=12% Similarity=0.045 Sum_probs=130.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A 158 (883)
+.-+|+.-.|..-|+..+.....++. .|--+-..|+...+.++....|++....... |..+|..--..+.-.++++.|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 44467777777777777765422222 2555666677777777777777776554322 344554444444455667777
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238 (883)
Q Consensus 159 ~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G 238 (883)
..=|+..+......-..|--+--+.-|.+++++++..|++.+++ ++-....||..-..+...++++.|.+.|+......
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 77777766643221115555555666677777777777776653 44445677777777777777777777777665432
Q ss_pred CC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761 239 RM-------ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310 (883)
Q Consensus 239 ~~-------Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~ 310 (883)
-. +...+--+++-.- -.+++..|.+++++..+ - -+.....|-+|-..-.+.| ++++|+++|++-.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~-Dpkce~A~~tlaq~~lQ~~---~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--L-DPKCEQAYETLAQFELQRG---KIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--c-CchHHHHHHHHHHHHHHHh---hHHHHHHHHHHHH
Confidence 11 1112222222222 22667777777766551 0 1223456666766677777 5557777776643
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.51 E-value=0.039 Score=69.26 Aligned_cols=230 Identities=13% Similarity=0.065 Sum_probs=174.5
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH
Q 002761 101 SPG-PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL-----HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ 174 (883)
Q Consensus 101 ~pd-~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd-----~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv 174 (883)
.|| ...|-..|.-..+.++.++|.+++++.+.. +.+. ...|.++++.-...|.-+...++|+++.+. +.|-.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-CDAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cchHH
Confidence 454 567888999999999999999999988653 3221 235777777777778888899999999885 34445
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 002761 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM-ATTFHFNHLLSCQ 253 (883)
Q Consensus 175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~-Pd~~tyn~LI~~y 253 (883)
+|..|...|.+.+..++|-++|+.|.++ +.-....|...+..+.+.++-+.|..++.+..+.=-+ -.+-...-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 8999999999999999999999999874 2245588999999999999999999999887764211 1234445556666
Q ss_pred HHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH--HHHHHHHHHHH
Q 002761 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV--KTYALLVECFT 331 (883)
Q Consensus 254 ~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~--~Ty~~LI~a~~ 331 (883)
.++|+.+.+..+|+... ...+.-.-.|+..|..=.++| ....+..+|++... .++.|-. +.|.-.+..=-
T Consensus 1611 Fk~GDaeRGRtlfEgll---~ayPKRtDlW~VYid~eik~~---~~~~vR~lfeRvi~--l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLL---SAYPKRTDLWSVYIDMEIKHG---DIKYVRDLFERVIE--LKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred hhcCCchhhHHHHHHHH---hhCccchhHHHHHHHHHHccC---CHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHH
Confidence 78999999999999987 223446678999999999999 66689999999988 5676643 44555555444
Q ss_pred HcCCHHHHHH
Q 002761 332 KYCAVTEAIR 341 (883)
Q Consensus 332 k~G~~eeA~~ 341 (883)
..|+-..++.
T Consensus 1683 ~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1683 SHGDEKNVEY 1692 (1710)
T ss_pred hcCchhhHHH
Confidence 5555443333
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.46 E-value=0.012 Score=62.20 Aligned_cols=184 Identities=11% Similarity=0.014 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCh-hH--H
Q 002761 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH----ETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQ--A 175 (883)
Q Consensus 103 d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~----~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~p-dv--t 175 (883)
....+-.+...|.+.|++++|...|++.... .|+. .++..+..++.+.|+++.|...++.+.+..... .. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4456666666777777888888877776653 2321 355666677777778888888887777654321 11 3
Q ss_pred HHHHHHHHHHC--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 002761 176 WLILVEELVRN--------KYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246 (883)
Q Consensus 176 yn~LI~~y~k~--------G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~ty 246 (883)
+..+-..|.+. |+.+.|.+.|+.+... .|+. ..+..+... .. .... .. ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~~------~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRNR------LA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHHH------HH--------HHH
Confidence 33333444443 5677777777777653 2332 122111110 00 0000 00 001
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311 (883)
Q Consensus 247 n~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~ 311 (883)
-.+-..|.+.|++.+|...|........+-+.....+..+..+|.+.| +.++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg---~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG---LKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh
Confidence 134445666777777777776655200111223556666777777777 34466666666655
No 95
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.44 E-value=0.00014 Score=50.93 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 002761 365 PLSLYLRALCREGRIIELLEALEAMAKDNQ 394 (883)
Q Consensus 365 tYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi 394 (883)
|||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 699999999999999999999999999885
No 96
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.41 E-value=0.00013 Score=51.10 Aligned_cols=29 Identities=38% Similarity=0.649 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAG 238 (883)
Q Consensus 210 tyn~LI~a~~k~g~~eeA~~lf~~M~~~G 238 (883)
|||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 97
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.37 Score=53.99 Aligned_cols=272 Identities=11% Similarity=0.012 Sum_probs=171.0
Q ss_pred CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHH
Q 002761 100 LSPGPRSFHGLVVAYTLN--GDHEGAMHSLKRELSAG-VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAW 176 (883)
Q Consensus 100 ~~pd~~tyn~LI~a~~~~--g~~~~A~~lf~~M~~~G-i~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvty 176 (883)
+.|+..+....|.++++. ++...|..++--+.... ++-|......+-+.+...|+..+|...|++....++..-...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 444445555666666653 45555555554443333 555677788999999999999999999998876543111122
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 002761 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256 (883)
Q Consensus 177 n~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~ 256 (883)
...--.+.+.|+.++...+...+.... .-+...|-.-...+....++..|+.+-+.-++..-. ++..|-.=-..+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 222233467788888777777765421 122234444444455677888888888777664311 233332223456678
Q ss_pred CCHHHHHHHHHHchhCCCCCC-CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHH-HHH-HHc
Q 002761 257 GIPEVAFATFENMEYGEDYMK-PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV-ECF-TKY 333 (883)
Q Consensus 257 G~~e~A~~lf~~M~~g~~gi~-pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI-~a~-~k~ 333 (883)
|+.+.|.--|+.... +. -+..+|.-|+..|.-.| +..+|+-+-+...+ -+.-+..|.+.+- ..| -..
T Consensus 348 ~R~~~A~IaFR~Aq~----Lap~rL~~Y~GL~hsYLA~~---~~kEA~~~An~~~~---~~~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQM----LAPYRLEIYRGLFHSYLAQK---RFKEANALANWTIR---LFQNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred cchHHHHHHHHHHHh----cchhhHHHHHHHHHHHHhhc---hHHHHHHHHHHHHH---HhhcchhhhhhhcceeeccCc
Confidence 999999999987551 23 47889999999999999 77798887777654 2444555544331 222 222
Q ss_pred CCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761 334 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392 (883)
Q Consensus 334 G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~ 392 (883)
.--++|..+++.-.+. .|..+. ..+.+...+...|+.++++.++++-...
T Consensus 418 ~~rEKAKkf~ek~L~~--~P~Y~~-------AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKI--NPIYTP-------AVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred hhHHHHHHHHHhhhcc--CCccHH-------HHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 3347788888776542 222221 3467778888999999999999987543
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.49 Score=55.26 Aligned_cols=179 Identities=10% Similarity=0.009 Sum_probs=93.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCc
Q 002761 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354 (883)
Q Consensus 276 i~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~ 354 (883)
..|... +.+++....+...- ...++.+++..--. +..-+ ....-.++.-....|+++.|.+++........ +
T Consensus 336 ~~p~~~-~~~ll~~~t~~~~~-~~~ka~e~L~~~~~---~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~--s 408 (652)
T KOG2376|consen 336 MSPESL-FPILLQEATKVREK-KHKKAIELLLQFAD---GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK--S 408 (652)
T ss_pred cCchHH-HHHHHHHHHHHHHH-HHhhhHHHHHHHhc---cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh--h
Confidence 344443 44444444443311 35567777776654 33222 33444556677889999999999983331100 0
Q ss_pred cccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHH
Q 002761 355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARY 434 (883)
Q Consensus 355 ~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~ 434 (883)
.+......|.+..+++..|.+.+..+-|-.++++-...-..--+... ....++ + ..+.+
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~----~l~~~~----------------~-~aa~f 467 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI----ALLSLM----------------R-EAAEF 467 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch----HHHhHH----------------H-HHhHH
Confidence 00011222335578888889988888888888776432110000000 011111 1 12222
Q ss_pred HHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHHHhhchHHHHHHHH
Q 002761 435 ISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLR 490 (883)
Q Consensus 435 ~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~~~A~~Ll~ 490 (883)
-...|..++|..+++++.+. ..+|.... ..++.++|+. ..+.|..+-.
T Consensus 468 ~lr~G~~~ea~s~leel~k~-n~~d~~~l------~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKF-NPNDTDLL------VQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHhcCchHHHHHHHHHHHHh-CCchHHHH------HHHHHHHHhc-CHHHHHHHhh
Confidence 23369999999999987653 12333333 2555566665 3445555543
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.36 E-value=0.021 Score=60.27 Aligned_cols=188 Identities=15% Similarity=0.000 Sum_probs=114.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-hh-H-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC-CCH-HHHH
Q 002761 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYD-IR-Q-AWLILVEELVRNKYLEDANKVFLRGAKGGLR-ATD-EIYD 212 (883)
Q Consensus 138 d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~-pd-v-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~-pd~-~tyn 212 (883)
....+..+...+.+.|+++.|...|+++.+.... |. . ++..+...|.+.|++++|...|+++.+..-. |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556677777777888888888888887765432 21 2 5666777788888888888888887763211 111 1333
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHH
Q 002761 213 LMIAEDCKA--------GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284 (883)
Q Consensus 213 ~LI~a~~k~--------g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn 284 (883)
.+-.++.+. |++++|.+.|+.+...... +...+.++... .. . ..... ...-
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~-~~---~------~~~~~----------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRM-DY---L------RNRLA----------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHH-HH---H------HHHHH----------HHHH
Confidence 344444433 5566777777776654221 12222211111 00 0 00000 0112
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002761 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350 (883)
Q Consensus 285 ~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~ 350 (883)
.+...|.+.| +..+|+..|....... .-.| ....+..+..++.+.|++++|..+++.+...+
T Consensus 171 ~~a~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRG---AYVAAINRFETVVENY-PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcC---ChHHHHHHHHHHHHHC-CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4556788899 6669999999988731 1123 34678889999999999999999999887543
No 100
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.34 E-value=0.58 Score=55.20 Aligned_cols=323 Identities=16% Similarity=0.108 Sum_probs=179.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcC
Q 002761 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG-VRPLHETLIALA------RLFGSKG 153 (883)
Q Consensus 81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~G-i~Pd~~ty~~LI------~a~~~~g 153 (883)
+.|++......-.+..+.. +.....|-.+..++.-.|+...|..++++..+.- -.|+...|.-.. ....+.|
T Consensus 121 QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g 199 (700)
T KOG1156|consen 121 QMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG 199 (700)
T ss_pred HHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 3344454444444444322 2345678888888888899999999988887654 246666654332 2345567
Q ss_pred CHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCChHHHH-HH
Q 002761 154 LATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC-KAGDHSNAL-EI 230 (883)
Q Consensus 154 ~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~-k~g~~eeA~-~l 230 (883)
.++.|.+.+..-... +.... .--+-.+.+.+.+++++|..++..+...+ ||.+-|+-.+..+. +.-+.-++. .+
T Consensus 200 ~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 200 SLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKAL 276 (700)
T ss_pred cHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 777777665443322 21222 23355667888899999999999988754 88877776555444 444444444 66
Q ss_pred HHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH----HHH
Q 002761 231 AYEMEAAG---RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ----DVA 303 (883)
Q Consensus 231 f~~M~~~G---~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~----eAl 303 (883)
|....+.- -.|-....+.+.. ..-.+....++..+. +.|+++--. .+.+-|-.-. +.. -|.
T Consensus 277 y~~ls~~y~r~e~p~Rlplsvl~~----eel~~~vdkyL~~~l--~Kg~p~vf~---dl~SLyk~p~---k~~~le~Lvt 344 (700)
T KOG1156|consen 277 YAILSEKYPRHECPRRLPLSVLNG----EELKEIVDKYLRPLL--SKGVPSVFK---DLRSLYKDPE---KVAFLEKLVT 344 (700)
T ss_pred HHHHhhcCcccccchhccHHHhCc----chhHHHHHHHHHHHh--hcCCCchhh---hhHHHHhchh---HhHHHHHHHH
Confidence 66554431 1111111111111 111222233444444 344443222 2222221111 111 122
Q ss_pred HHHHHhHhcc--------CCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHH
Q 002761 304 ELLGMMVEDH--------KRLQPNVKTY--ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 373 (883)
Q Consensus 304 ~lf~~M~~~~--------~gi~Pd~~Ty--~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y 373 (883)
.+.+.+...+ +--.|....| -.++..|-+.|+++.|..+.+....+ .|+++. .|-+=-..+
T Consensus 345 ~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliE-------ly~~KaRI~ 415 (700)
T KOG1156|consen 345 SYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIE-------LYLVKARIF 415 (700)
T ss_pred HHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHH-------HHHHHHHHH
Confidence 2222221110 0014555444 45677899999999999999888642 333332 344555888
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcC
Q 002761 374 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 453 (883)
Q Consensus 374 ~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~ 453 (883)
+.+|.+++|..++++-.+... +|..+ -..| +.++..+..+++|..+.....+
T Consensus 416 kH~G~l~eAa~~l~ea~elD~---aDR~I--------NsKc-----------------AKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 416 KHAGLLDEAAAWLDEAQELDT---ADRAI--------NSKC-----------------AKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HhcCChHHHHHHHHHHHhccc---hhHHH--------HHHH-----------------HHHHHHccccHHHHHHHHHhhh
Confidence 999999999999999988774 33221 1112 2233447888888888876655
Q ss_pred CCC
Q 002761 454 TPL 456 (883)
Q Consensus 454 ~g~ 456 (883)
.|.
T Consensus 468 ~~~ 470 (700)
T KOG1156|consen 468 EGF 470 (700)
T ss_pred ccc
Confidence 554
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.79 Score=56.38 Aligned_cols=130 Identities=13% Similarity=0.132 Sum_probs=90.9
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccH
Q 002761 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 299 (883)
Q Consensus 220 k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~ 299 (883)
.++-+++|..+|+... .+....+.||. ..+.++.|.+.-++.. . ...|+.+..+-.+.| .+
T Consensus 1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~--p~vWsqlakAQL~~~---~v 1120 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------E--PAVWSQLAKAQLQGG---LV 1120 (1666)
T ss_pred hhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------C--hHHHHHHHHHHHhcC---ch
Confidence 3444555555555332 23444445544 3456666666666655 3 356888888888888 77
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCH
Q 002761 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 379 (883)
Q Consensus 300 ~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~ 379 (883)
.+|++-|-+. -|...|.-+|..+.+.|.+++-.+++...+++...|.+. +.||-+|++.+++
T Consensus 1121 ~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id----------~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1121 KDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID----------SELIFAYAKTNRL 1182 (1666)
T ss_pred HHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch----------HHHHHHHHHhchH
Confidence 7887765443 266789999999999999999999988777766555544 6899999999999
Q ss_pred HHHHHHH
Q 002761 380 IELLEAL 386 (883)
Q Consensus 380 ~eA~~lf 386 (883)
.+-.+++
T Consensus 1183 ~elE~fi 1189 (1666)
T KOG0985|consen 1183 TELEEFI 1189 (1666)
T ss_pred HHHHHHh
Confidence 8877665
No 102
>PLN02789 farnesyltranstransferase
Probab=97.32 E-value=0.11 Score=58.01 Aligned_cols=215 Identities=7% Similarity=-0.058 Sum_probs=129.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 002761 108 HGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE-TLIALARLFGSKG-LATKGLEILAAMEKINYDIRQAWLILVEELVR 185 (883)
Q Consensus 108 n~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~-ty~~LI~a~~~~g-~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k 185 (883)
+.+-..+...+..++|+.+..+.... .|+.. +|+.--.++.+.| .+++++..++.+.+.....-.+|+..--.+.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH
Confidence 33333444556777777777777653 44443 3444444444555 56778888888777655444466655444555
Q ss_pred CCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCH-
Q 002761 186 NKYL--EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC---GIP- 259 (883)
Q Consensus 186 ~G~~--eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~---G~~- 259 (883)
.|.. +++..+++.+.+.. +-|..+|+..-..+.+.|++++|++.+..+.+.... |...|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 5542 56777777777643 234577887777777788888888888888877654 556666655555444 222
Q ss_pred ---HHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHc
Q 002761 260 ---EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY-DRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKY 333 (883)
Q Consensus 260 ---e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~-d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~ 333 (883)
+.+.....++.. -.+-|...|+-+...|...+.. .+..+|.+.+.+... ..| +......|++.|+..
T Consensus 197 ~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~----~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 197 AMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS----KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc----ccCCcHHHHHHHHHHHHhh
Confidence 345555544331 1144677788777777764311 122457777777654 233 456677778887763
No 103
>PLN02789 farnesyltranstransferase
Probab=97.32 E-value=0.099 Score=58.31 Aligned_cols=211 Identities=15% Similarity=0.089 Sum_probs=148.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh--
Q 002761 148 LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNK-YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH-- 224 (883)
Q Consensus 148 a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G-~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~-- 224 (883)
.+...+..++|+.+...+++.....-.+|+.--..+.+.| .+++++..++++.+... .+..+|+.--..+.+.|..
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhh
Confidence 3445678899999999999876544447887777777777 68999999999987542 3446787665556666653
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC---cc-cHH
Q 002761 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES---YD-RVQ 300 (883)
Q Consensus 225 eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~---~d-~~~ 300 (883)
++++.+++.+.+...+ |..+|+..--.+.+.|++++|.+.++++. +.. ..|...|+.....+.+.|. ++ ..+
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I--~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLL--EED-VRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHC-CCchhHHHHHHHHHHhccccccccccHH
Confidence 6788999898876543 78899999999999999999999999998 222 4567778877666665521 21 124
Q ss_pred HHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHH
Q 002761 301 DVAELLGMMVEDHKRLQP-NVKTYALLVECFTKY----CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 375 (883)
Q Consensus 301 eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~----G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~ 375 (883)
+.+....+++. ..| |...|+.+-..+... +...+|..++.......+.. ......|++.|+.
T Consensus 201 ~el~y~~~aI~----~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s---------~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAIL----ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH---------VFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHH----hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc---------HHHHHHHHHHHHh
Confidence 57777767765 345 566777777777663 34566888887765532221 1146788999986
Q ss_pred c
Q 002761 376 E 376 (883)
Q Consensus 376 ~ 376 (883)
.
T Consensus 268 ~ 268 (320)
T PLN02789 268 G 268 (320)
T ss_pred h
Confidence 4
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.30 E-value=0.13 Score=65.54 Aligned_cols=266 Identities=12% Similarity=0.070 Sum_probs=173.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPG----PRSFHGLVVAYTLNGDHEGAMHSLKRELSA----GV-RPLHETLIALARLF 149 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd----~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~----Gi-~Pd~~ty~~LI~a~ 149 (883)
+...|+++.|...+++....--..+ ...++.+-..+...|++++|...+.+.... |- .+-..++..+-..+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 4568999999999998775311112 234566667778899999999999887642 11 11123455666778
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCC--h-hH-HHHHHHHHHHHCCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHH
Q 002761 150 GSKGLATKGLEILAAMEKI----NYD--I-RQ-AWLILVEELVRNKYLEDANKVFLRGAKG--GLRAT--DEIYDLMIAE 217 (883)
Q Consensus 150 ~~~g~~~~A~~l~~~m~~~----g~~--p-dv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~--gi~pd--~~tyn~LI~a 217 (883)
...|+++.|...+.+.... +.. + .. .+..+-..+...|++++|...+.+.... ...+. ..++..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998876652 221 1 12 4555666777789999999999887542 11122 3455556677
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCH---HHHHHHHH
Q 002761 218 DCKAGDHSNALEIAYEMEAAGRMA-TTFHF-----NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT---ETYNCVIQ 288 (883)
Q Consensus 218 ~~k~g~~eeA~~lf~~M~~~G~~P-d~~ty-----n~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~---~tyn~LI~ 288 (883)
+...|++++|.+.+.......-.. ....+ ...+..+...|+.+.|...+.... ........ ..+..+..
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~--~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAP--KPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcC--CCCCccchhHHHHHHHHHH
Confidence 888999999999998875421111 11111 112345567899999999988766 22111111 12445667
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhcc--CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002761 289 AYTRAESYDRVQDVAELLGMMVEDH--KRLQPNV-KTYALLVECFTKYCAVTEAIRHFRALQNY 349 (883)
Q Consensus 289 ay~~~G~~d~~~eAl~lf~~M~~~~--~gi~Pd~-~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~ 349 (883)
++...| +..+|..++.+..... .|..++. .+...+-.++.+.|+.++|...+......
T Consensus 700 ~~~~~g---~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 700 AQILLG---QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcC---CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788889 5568888888765410 2333322 34555566888999999999999998753
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.076 Score=56.88 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHH-HHHHHHH
Q 002761 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELV 184 (883)
Q Consensus 107 yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn-~LI~~y~ 184 (883)
+++.|..+.+..++..|++++..-.+. .| +....+.|-.+|-...++..|-..++++...-.... -|. ---..+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~-qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE-QYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH-HHHHHHHHHHH
Confidence 455555555566666666665544333 22 444555555555566666666666666554322111 221 1123344
Q ss_pred HCCCHHHHHHHHHHHHh
Q 002761 185 RNKYLEDANKVFLRGAK 201 (883)
Q Consensus 185 k~G~~eeA~~lf~~M~~ 201 (883)
+.+.+.+|++|...|..
T Consensus 90 ~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLD 106 (459)
T ss_pred HhcccHHHHHHHHHhcC
Confidence 55555566665555543
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.043 Score=58.67 Aligned_cols=193 Identities=9% Similarity=0.002 Sum_probs=133.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 002761 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA-LARLFG 150 (883)
Q Consensus 72 ~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~-LI~a~~ 150 (883)
+...+..+.+..++..|.+++..-.++. +.+....+.|-.+|-+..++..|-..+.++-.. .|-..-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556667788889999999988877664 337788888889999999999999999988653 455444432 234455
Q ss_pred hcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHH--HHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 002761 151 SKGLATKGLEILAAMEKINYDIRQ-AWLILVEE--LVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227 (883)
Q Consensus 151 ~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~--y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA 227 (883)
+.+.+..|+.+...|... ++. .-..-+.+ .-..+++..+..+.++....| +..+.+..-....+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 677899999998888653 322 11112222 234678888888888876433 223333333445688999999
Q ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC
Q 002761 228 LEIAYEMEAA-GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277 (883)
Q Consensus 228 ~~lf~~M~~~-G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~ 277 (883)
.+-|....+- |.. ....||.-+..| +.|+...|.+...++. ++|++
T Consensus 164 vqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIi--eRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEII--ERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHH--Hhhhh
Confidence 9999887764 455 456788766555 5578889999988888 56654
No 107
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.17 E-value=0.0034 Score=71.84 Aligned_cols=123 Identities=12% Similarity=0.016 Sum_probs=96.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHH
Q 002761 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI---RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210 (883)
Q Consensus 134 Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~p---dvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~t 210 (883)
+...+......+++.+....+++.+..++-......-.. +.|..++|..|.+.|..+.|..++..=..-|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 455577778888888888888888888877776652111 12556888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 002761 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256 (883)
Q Consensus 211 yn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~ 256 (883)
||.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777777778887777777766
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.13 E-value=0.034 Score=65.88 Aligned_cols=189 Identities=16% Similarity=0.103 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002761 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254 (883)
Q Consensus 175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~ 254 (883)
.--.+...+..+|-...|..+|++. ..|.-+|.+|+..|+..+|..+..+-.+ -+||...|..+.+..-
T Consensus 400 ~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 4456778899999999999999986 5688899999999999999999988877 4789999999999988
Q ss_pred HcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHc
Q 002761 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKY 333 (883)
Q Consensus 255 k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~ 333 (883)
....++.|.++++... ..-..+|+-++ .+++ +..++.+.|+.-.+ +.| -..||-.+=.+..+.
T Consensus 469 d~s~yEkawElsn~~s------arA~r~~~~~~---~~~~---~fs~~~~hle~sl~----~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYIS------ARAQRSLALLI---LSNK---DFSEADKHLERSLE----INPLQLGTWFGLGCAALQL 532 (777)
T ss_pred ChHHHHHHHHHhhhhh------HHHHHhhcccc---ccch---hHHHHHHHHHHHhh----cCccchhHHHhccHHHHHH
Confidence 8888999999998766 11122222222 2256 45588888887655 223 345676676777788
Q ss_pred CCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcc
Q 002761 334 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 400 (883)
Q Consensus 334 G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~ 400 (883)
+++..|.+.|..-....+.. ...||.+-.+|.+.|+-.+|...+.+-.+.+.. ++++
T Consensus 533 ek~q~av~aF~rcvtL~Pd~---------~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~i 589 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDN---------AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQI 589 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCc---------hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCee
Confidence 99999999888776532221 226899999999999999999999998887753 5543
No 109
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.12 E-value=0.0052 Score=56.85 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=54.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcCCCCCHHHH
Q 002761 176 WLILVEELVRNKYLEDANKVFLRGAKGGL-RATDEIYDLMIAEDCKAG--------DHSNALEIAYEMEAAGRMATTFHF 246 (883)
Q Consensus 176 yn~LI~~y~k~G~~eeA~~lf~~M~~~gi-~pd~~tyn~LI~a~~k~g--------~~eeA~~lf~~M~~~G~~Pd~~ty 246 (883)
....|.-+...+++.....+|+.+++.|+ .|++.+||.++.+.++.. ++-+.+.+|+.|...+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 33445555555777777777777777777 677777777777766543 244566677777777777777777
Q ss_pred HHHHHHHHH
Q 002761 247 NHLLSCQAT 255 (883)
Q Consensus 247 n~LI~~y~k 255 (883)
|.+|..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 777776654
No 110
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.12 E-value=0.004 Score=64.23 Aligned_cols=95 Identities=20% Similarity=0.171 Sum_probs=74.3
Q ss_pred CCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----------
Q 002761 50 GDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG----------- 118 (883)
Q Consensus 50 v~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g----------- 118 (883)
-..|-.+|..+|..+.+... .|.|.++-....+..|.+.|+..|..+||.||+.+=+..
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~----------~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDV----------RRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred ccccHHHHHHHHHHHHhcCC----------CCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 45677788888888876532 367888999999999999999999999999999886532
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002761 119 -----DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154 (883)
Q Consensus 119 -----~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~ 154 (883)
+.+.|++++++|...|+-||..|+..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 234577788888888888888888888887766654
No 111
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.93 Score=53.03 Aligned_cols=185 Identities=14% Similarity=0.138 Sum_probs=103.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHH
Q 002761 73 MEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA--LARLFG 150 (883)
Q Consensus 73 ~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~--LI~a~~ 150 (883)
...+..+.+.|++++|.+....+...+ +-+...+.+=+.++.+.+.+++|+.+.+.-.. ..+++. +=.+||
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHH
Confidence 344556677788888888888887665 44566677777777888888888865543110 111111 233443
Q ss_pred --hcCCHHHHHHHHHHHHHcCCChhH--HHHHHHHHHHHCCCHHHHHHHHHHHHhCCC----------------------
Q 002761 151 --SKGLATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFLRGAKGGL---------------------- 204 (883)
Q Consensus 151 --~~g~~~~A~~l~~~m~~~g~~pdv--tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi---------------------- 204 (883)
+.+..++|...+. |..+.. +-..--..+-+.|++++|+.+|+.+.+.+.
T Consensus 89 ~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~ 163 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL 163 (652)
T ss_pred HHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH
Confidence 4566666666665 222221 222223345566777777777766643331
Q ss_pred ------CCCHHHHHHHHH---HHHHcCChHHHHHHHHHHHHcCC-------------CCCHHHH-HHHHHHHHHcCCHHH
Q 002761 205 ------RATDEIYDLMIA---EDCKAGDHSNALEIAYEMEAAGR-------------MATTFHF-NHLLSCQATCGIPEV 261 (883)
Q Consensus 205 ------~pd~~tyn~LI~---a~~k~g~~eeA~~lf~~M~~~G~-------------~Pd~~ty-n~LI~~y~k~G~~e~ 261 (883)
.| ..||..+-+ .+...|++.+|++++....+.+. .-.+.+. --|--.+-..|+-++
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 12 124444433 34467888888888887733221 1011111 123334567788888
Q ss_pred HHHHHHHch
Q 002761 262 AFATFENME 270 (883)
Q Consensus 262 A~~lf~~M~ 270 (883)
|..++....
T Consensus 243 a~~iy~~~i 251 (652)
T KOG2376|consen 243 ASSIYVDII 251 (652)
T ss_pred HHHHHHHHH
Confidence 888887766
No 112
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.73 Score=51.73 Aligned_cols=291 Identities=10% Similarity=-0.002 Sum_probs=159.7
Q ss_pred HHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhc
Q 002761 78 QHARNRDAPRVNDVIYDMIAAG-LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET----LIALARLFGSK 152 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G-~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~t----y~~LI~a~~~~ 152 (883)
+.+..++...|...+--+.... ++-|+.....+-..+...|+.++|...|++.+. +.|+..+ |..|+ .+.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL---~~e 279 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLL---GQE 279 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHH---Hhc
Confidence 4455566666666655554433 445778889999999999999999999988654 3444333 44443 456
Q ss_pred CCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002761 153 GLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232 (883)
Q Consensus 153 g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~ 232 (883)
|+++....+...+....-.....|-.-...+....++..|+.+-.+-.+.. +.+...|-.=-..+...+++++|.--|+
T Consensus 280 g~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 280 GGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred cCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHH
Confidence 667666666655554321000123333333444566777777766665522 1122333333345566777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhc
Q 002761 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312 (883)
Q Consensus 233 ~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~ 312 (883)
..+... +-+...|--|+..|.-.|++.+|.-+-+.... -+.-+..+.+- +.+....-.+.--++|.++++.-.+
T Consensus 359 ~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~---~~~~sA~~LtL-~g~~V~~~dp~~rEKAKkf~ek~L~- 432 (564)
T KOG1174|consen 359 TAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR---LFQNSARSLTL-FGTLVLFPDPRMREKAKKFAEKSLK- 432 (564)
T ss_pred HHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH---Hhhcchhhhhh-hcceeeccCchhHHHHHHHHHhhhc-
Confidence 766542 23566777777777777777776654443221 11122333222 2111111111123466666665543
Q ss_pred cCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002761 313 HKRLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391 (883)
Q Consensus 313 ~~gi~Pd~~-Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~ 391 (883)
+.|+-. ..+.+-.-|...|..+.+..+++.-.......+ .-+.|-+.+...+.+++|++.|..-..
T Consensus 433 ---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~----------LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 433 ---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN----------LHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred ---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH----------HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 555532 233444556666777777777766654221111 125666666666777777776666554
Q ss_pred CC
Q 002761 392 DN 393 (883)
Q Consensus 392 ~G 393 (883)
.+
T Consensus 500 ~d 501 (564)
T KOG1174|consen 500 QD 501 (564)
T ss_pred cC
Confidence 43
No 113
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.10 E-value=0.0061 Score=69.83 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002761 175 AWLILVEELVRNKYLEDANKVFLRGAKG--GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252 (883)
Q Consensus 175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~--gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~ 252 (883)
....+++......+++++..++.+.... ....-..|..++|+.|.+.|..++++.++..=...|+-||.+|||.||+.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 5566666666666677777777766653 11112234457777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 002761 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293 (883)
Q Consensus 253 y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~ 293 (883)
+.+.|++..|.++...|. ......+..|+.-.+.+|.+-
T Consensus 148 fl~~~~~~~A~~V~~~~~--lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMM--LQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHH--HhhccCCchHHHHHHHHHHHh
Confidence 777777777777777776 455556666666666666665
No 114
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.04 E-value=0.0066 Score=56.21 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=62.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002761 75 ELMQHARNRDAPRVNDVIYDMIAAGL-SPGPRSFHGLVVAYTLNG--------DHEGAMHSLKRELSAGVRPLHETLIAL 145 (883)
Q Consensus 75 ~L~~~~k~G~~~~A~~lf~~M~~~G~-~pd~~tyn~LI~a~~~~g--------~~~~A~~lf~~M~~~Gi~Pd~~ty~~L 145 (883)
.+..+...+++.....+|..+++.|+ .|++.+||.++.+.++.. ++-..+.+|..|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34455566888999999999999998 899999999999888764 244677888889888899999999998
Q ss_pred HHHHHh
Q 002761 146 ARLFGS 151 (883)
Q Consensus 146 I~a~~~ 151 (883)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 888754
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.03 E-value=0.028 Score=55.05 Aligned_cols=102 Identities=15% Similarity=-0.036 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHC
Q 002761 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRN 186 (883)
Q Consensus 107 yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~ 186 (883)
+..+-..+.+.|++++|...|+...... +.+...|..+-.++.+.|++++|...|....+........+..+-.+|.+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4456667777888888888888776543 225666777777788888888888888888776543323777777778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHH
Q 002761 187 KYLEDANKVFLRGAKGGLRATDEIY 211 (883)
Q Consensus 187 G~~eeA~~lf~~M~~~gi~pd~~ty 211 (883)
|+.++|...|+.... +.|+..-|
T Consensus 106 g~~~eAi~~~~~Al~--~~p~~~~~ 128 (144)
T PRK15359 106 GEPGLAREAFQTAIK--MSYADASW 128 (144)
T ss_pred CCHHHHHHHHHHHHH--hCCCChHH
Confidence 888888888887766 33554333
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.84 E-value=0.1 Score=63.99 Aligned_cols=132 Identities=11% Similarity=0.032 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 002761 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLM 214 (883)
Q Consensus 136 ~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~L 214 (883)
..+...+-.|..+..+.|.+++|..+++...+...........+...+.+.+++++|...+++..... |+. ...+.+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHH
Confidence 34566677777777777777777777777776533222266677777777777777777777776633 444 556666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 215 I~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
-.++.+.|++++|..+|++....+ .-+..++.++-..+-+.|+.++|...|+...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666777777777777777777632 2236667777777777777777777777665
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.84 E-value=0.058 Score=57.04 Aligned_cols=124 Identities=16% Similarity=0.061 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 002761 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVR 185 (883)
Q Consensus 106 tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k 185 (883)
..+.++....++|++..|...|++.... -++|..+|+.+--+|-+.|+.+.|..-|.+..+.-..-...+|.|--.|.-
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 3444455555555555555555544322 234455555555555555555555555555544433222344444444444
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002761 186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIA 231 (883)
Q Consensus 186 ~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf 231 (883)
.|+.+.|..++..-...+. .|...-..+.-.....|++.+|..+.
T Consensus 181 ~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555555554443321 23333344444444455555554443
No 118
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.81 E-value=0.0086 Score=61.80 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCH
Q 002761 206 ATDEIYDLMIAEDCK-----AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280 (883)
Q Consensus 206 pd~~tyn~LI~a~~k-----~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~ 280 (883)
.|..+|..+|..|.+ .|.++=....++.|.+.|+.-|..+|+.||+.+=| |.+ .|..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f-----------------vp~n 106 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF-----------------VPRN 106 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc-----------------cccc
Confidence 566777788877764 35677777778888888888888888888877654 221 1111
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCH
Q 002761 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336 (883)
Q Consensus 281 ~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~ 336 (883)
.+-++..-|-+ +.+-|++++++|.. .|+.||..|+..|++.|.+.+..
T Consensus 107 -~fQ~~F~hyp~-----Qq~c~i~lL~qME~--~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 107 -FFQAEFMHYPR-----QQECAIDLLEQMEN--NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred -HHHHHhccCcH-----HHHHHHHHHHHHHH--cCCCCcHHHHHHHHHHhccccHH
Confidence 11112222222 44577888888887 68888888888888888887754
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.81 E-value=0.15 Score=62.47 Aligned_cols=147 Identities=12% Similarity=0.044 Sum_probs=117.4
Q ss_pred CChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002761 170 YDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247 (883)
Q Consensus 170 ~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn 247 (883)
+..++ .+-.|-....+.|+.++|..+++...+ +.|+. .....+...+.+.+++++|+..++........ +....+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 33445 788888899999999999999999987 56776 56778889999999999999999999886432 555667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 002761 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327 (883)
Q Consensus 248 ~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI 327 (883)
.+-.++.+.|++++|..+|++.. . ...-+..++.++-..+-..| +.++|...|+.... ...|-...|+-++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~--~-~~p~~~~~~~~~a~~l~~~G---~~~~A~~~~~~a~~---~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLS--R-QHPEFENGYVGWAQSLTRRG---ALWRARDVLQAGLD---AIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH--h-cCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH---hhCcchHHHHHHH
Confidence 77788889999999999999998 3 22234788888899999999 67799999999886 4556667766655
Q ss_pred H
Q 002761 328 E 328 (883)
Q Consensus 328 ~ 328 (883)
.
T Consensus 230 ~ 230 (694)
T PRK15179 230 V 230 (694)
T ss_pred H
Confidence 3
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.79 E-value=0.048 Score=56.48 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=67.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 002761 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF-GSKGL--ATKGL 159 (883)
Q Consensus 83 G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~-~~~g~--~~~A~ 159 (883)
++.+++...+....+.. +.|...|..|-..|...|++++|...|++...... -|...+..+-.++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 33445555555544443 34566666666666666666666666666555321 1444455554442 44454 36666
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Q 002761 160 EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202 (883)
Q Consensus 160 ~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~ 202 (883)
+++++..+.......++..+-..+.+.|++++|...|+++.+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666665443336666666666666666666666666553
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.76 E-value=0.054 Score=51.63 Aligned_cols=96 Identities=13% Similarity=0.022 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 002761 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELV 184 (883)
Q Consensus 105 ~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~ 184 (883)
.....+...+.+.|++++|.+.|+.....+ +.+...+..+...+.+.|+++.|..++.+..+.+.....++..+-..|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 334445555556666666666666655532 2244555556666666666666666666665554322225555555666
Q ss_pred HCCCHHHHHHHHHHHHh
Q 002761 185 RNKYLEDANKVFLRGAK 201 (883)
Q Consensus 185 k~G~~eeA~~lf~~M~~ 201 (883)
..|+.+.|...|+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666555
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.75 E-value=0.31 Score=55.83 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHH
Q 002761 117 NGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF 196 (883)
Q Consensus 117 ~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf 196 (883)
.|.+++|...++.+... .+-|..-.......+.+.++..+|.+.++.+..........+-.+-.+|.+.|++.+|.+++
T Consensus 319 ~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L 397 (484)
T COG4783 319 AGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRIL 397 (484)
T ss_pred hcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHH
Confidence 44555555555554432 11223333334444555555555555555555442222123444445555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234 (883)
Q Consensus 197 ~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M 234 (883)
+..... .+-|...|..|-.+|...|+..+|..-..++
T Consensus 398 ~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 398 NRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 554432 2234455555555555555555555554444
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.74 E-value=0.36 Score=51.21 Aligned_cols=158 Identities=15% Similarity=0.087 Sum_probs=122.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHC
Q 002761 108 HGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRN 186 (883)
Q Consensus 108 n~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~ 186 (883)
.-+-..+-..|+-+.+..+...... ...-|....+.+.....+.|++..|...|.+...... +|. +||.+--+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 4444556667777777766655322 1233555666688999999999999999999887653 444 999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002761 187 KYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265 (883)
Q Consensus 187 G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~l 265 (883)
|++++|..-|.+..+ +.|+ ...+|.|--.|.-.|+.+.|..++......+.. |..+-..|.......|+++.|..+
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999999877 3343 477888888888899999999999998877544 666677788888999999999988
Q ss_pred HHHch
Q 002761 266 FENME 270 (883)
Q Consensus 266 f~~M~ 270 (883)
-..-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 76655
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.74 E-value=0.031 Score=66.22 Aligned_cols=239 Identities=11% Similarity=0.069 Sum_probs=162.0
Q ss_pred cCChHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002761 67 GLRLIFMEELM-QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIAL 145 (883)
Q Consensus 67 ~~~~~~~~~L~-~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~L 145 (883)
...+..-..+. .+...|-+..|..+|++.. .|.-.|-+|+..|+..+|..+..+..+ -+||+.-|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 33333333333 3778899999999999865 578888999999999999888887766 47888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 002761 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225 (883)
Q Consensus 146 I~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~e 225 (883)
.+......-+++|.++++..-.+- ...++.+ ..+.+++.++.+.|+.-.+.. +--..+|-.+-.+..+.+++.
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA---~r~~~~~---~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARA---QRSLALL---ILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHH---HHhhccc---cccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 888877777888888887654330 0122222 223788888888887755422 123367777777777888888
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHH
Q 002761 226 NALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304 (883)
Q Consensus 226 eA~~lf~~M~~~G~~P-d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~ 304 (883)
.|.+.|..-... .| +...||.+-.+|.+.|+-.+|...+.+.. +.+ .-+.-.|-.-+....+.| ..++|++
T Consensus 537 ~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl--Kcn-~~~w~iWENymlvsvdvg---e~eda~~ 608 (777)
T KOG1128|consen 537 AAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL--KCN-YQHWQIWENYMLVSVDVG---EFEDAIK 608 (777)
T ss_pred HHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh--hcC-CCCCeeeechhhhhhhcc---cHHHHHH
Confidence 888888877653 44 45678999999999999999998888877 343 444455556666777888 4446666
Q ss_pred HHHHhHhccCCCCCCHHHHHHHHHHHHH
Q 002761 305 LLGMMVEDHKRLQPNVKTYALLVECFTK 332 (883)
Q Consensus 305 lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k 332 (883)
.+++|... +...-|......++....+
T Consensus 609 A~~rll~~-~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 609 AYHRLLDL-RKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHHh-hhhcccchhhHHHHHHHHh
Confidence 66666543 2222255444444444433
No 125
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.67 E-value=0.043 Score=62.61 Aligned_cols=125 Identities=15% Similarity=0.118 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002761 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC 219 (883)
Q Consensus 140 ~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~ 219 (883)
+...+|++.+...++++.|..+|+++.+.. |++ ...|...|...++-.+|.+++.+.... .+-+....+.-...|.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev-~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV-AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH-HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 334455666666677777777777777665 332 334566666677777777777776643 2234455555566677
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 220 KAGDHSNALEIAYEMEAAGRMATTF-HFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 220 k~g~~eeA~~lf~~M~~~G~~Pd~~-tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
+.++++.|+.+.+++... .|+.+ +|..|..+|.+.|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777788888888777764 45443 77888888888888888888887776
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.66 E-value=0.17 Score=52.49 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--hHHHH
Q 002761 152 KGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED-CKAGD--HSNAL 228 (883)
Q Consensus 152 ~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~-~k~g~--~eeA~ 228 (883)
.++.+++...+....+........|..|-..|...|++++|...|++..+.. +-+...+..+-.++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3444555555555555443222266666666666666666666666665532 12334555555443 44455 36666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 229 ~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
+++++..+.... +..++..+-..+.+.|++++|...|+.+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666665432 45556666666666666666666666665
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.93 Score=48.05 Aligned_cols=188 Identities=10% Similarity=0.003 Sum_probs=130.8
Q ss_pred CCHHHHHHHHHHHH---HCC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHH
Q 002761 118 GDHEGAMHSLKREL---SAG-VRPLHET-LIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDA 192 (883)
Q Consensus 118 g~~~~A~~lf~~M~---~~G-i~Pd~~t-y~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA 192 (883)
.+.++.++++.+|. ..| ..|+..+ |--++-+....|+.+.|...+.++...-.....+--.=-..+-..|+.++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 46677777777765 334 5666554 556666667788888898888888766422111111111123447888999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002761 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272 (883)
Q Consensus 193 ~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g 272 (883)
.++++.+.+.. +-|.++|--=+...-..|+--+|.+-+....+. +..|.-.|--|-..|...|+++.|.-.+++|.-
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll- 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL- 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-
Confidence 99999988876 455678877777777778777888877777765 566888999999999999999999999988762
Q ss_pred CCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761 273 EDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311 (883)
Q Consensus 273 ~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~ 311 (883)
+.| +...|-.+-..+.-.|..+..+-+.++|.+-++
T Consensus 183 ---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 ---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred ---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 234 444555666666666655567778888888776
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.61 E-value=0.087 Score=60.19 Aligned_cols=122 Identities=11% Similarity=0.053 Sum_probs=98.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 002761 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257 (883)
Q Consensus 178 ~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G 257 (883)
+|+..+...++++.|..+|+++.+.. |++ ...|+..+...++-.+|.+++.+..... +-+....+.....|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 44555566889999999999998865 554 3457888888889999999999888653 336667777778888999
Q ss_pred CHHHHHHHHHHchhCCCCCCCCH-HHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761 258 IPEVAFATFENMEYGEDYMKPDT-ETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311 (883)
Q Consensus 258 ~~e~A~~lf~~M~~g~~gi~pd~-~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~ 311 (883)
+.+.|..+.+++.+ +.|+. .+|..|..+|.+.| +.+.|+-.++.+..
T Consensus 249 ~~~lAL~iAk~av~----lsP~~f~~W~~La~~Yi~~~---d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE----LSPSEFETWYQLAECYIQLG---DFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH----hCchhHHHHHHHHHHHHhcC---CHHHHHHHHhcCcC
Confidence 99999999999873 45655 59999999999999 66699999999886
No 129
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=1 Score=55.36 Aligned_cols=160 Identities=14% Similarity=0.029 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 002761 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEEL 183 (883)
Q Consensus 104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y 183 (883)
+..|+.+-.+-.+.|.+.+|++-|-+. -|+..|.-+++.+.+.|.+++-...+...++..-.|.+ =+.||-+|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i-d~eLi~Ay 1176 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI-DSELIFAY 1176 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc-hHHHHHHH
Confidence 356778888878888888887766431 26778888999999999998888888777776655543 35788899
Q ss_pred HHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002761 184 VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263 (883)
Q Consensus 184 ~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~ 263 (883)
++.+++.+-..+.. -||......+-+-|...|.++.|.-+|. ++.-|.-|-..+...|.+..|.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHH
Confidence 99888887766553 2777777777777888888888877776 4455667777777777777766
Q ss_pred HHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 002761 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294 (883)
Q Consensus 264 ~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G 294 (883)
.--++.. +..||.-+-.+|...+
T Consensus 1241 D~aRKAn--------s~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1241 DAARKAN--------STKTWKEVCFACVDKE 1263 (1666)
T ss_pred HHhhhcc--------chhHHHHHHHHHhchh
Confidence 5544333 5556666655555554
No 130
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.60 E-value=0.4 Score=53.43 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH
Q 002761 244 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323 (883)
Q Consensus 244 ~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty 323 (883)
.+.+..|.-+...|....|.++-.+.+ .||..-|-..|.+|+..+ ++++..++... +-..+-|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk------v~dkrfw~lki~aLa~~~---~w~eL~~fa~s--------kKsPIGy 240 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK------VPDKRFWWLKIKALAENK---DWDELEKFAKS--------KKSPIGY 240 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC------CcHHHHHHHHHHHHHhcC---CHHHHHHHHhC--------CCCCCCh
Confidence 455666777888999999999999998 899999999999999999 45454443221 1234789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389 (883)
Q Consensus 324 ~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M 389 (883)
-.++.+|.+.|...+|..+...+ ++..-+..|.++|.+.+|.+.--+.
T Consensus 241 epFv~~~~~~~~~~eA~~yI~k~------------------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 241 EPFVEACLKYGNKKEASKYIPKI------------------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC------------------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999999999999998774 2467899999999999998876555
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.16 Score=53.98 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=59.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHH----HHCC
Q 002761 112 VAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEEL----VRNK 187 (883)
Q Consensus 112 ~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y----~k~G 187 (883)
..|+..|++++|++..... . +......=+..+.+..+.+.|.+.++.|.+.. -+.|.+-|-.++ ...+
T Consensus 116 ~i~~~~~~~deAl~~~~~~--~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG--E----NLEAAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HHhhcCCChHHHHHHHhcc--c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccch
Confidence 3455566666666655441 1 22222222333444555666666666665432 222333333322 2344
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238 (883)
Q Consensus 188 ~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G 238 (883)
.+.+|+-+|++|-++ ..|+.-+.|-+..++...|++++|..++++...+.
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 566666666666442 34566666666666666666666666666665543
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.48 E-value=0.094 Score=51.23 Aligned_cols=114 Identities=12% Similarity=-0.009 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHHHHcCCChhH---HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHH
Q 002761 152 KGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD--EIYDLMIAEDCKAGDHSN 226 (883)
Q Consensus 152 ~g~~~~A~~l~~~m~~~g~~pdv---tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~--~tyn~LI~a~~k~g~~ee 226 (883)
.++...+...++.+.+......- ..-.+-..+...|++++|...|+........|+. ...-.|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555554322111 2222334555556666666666665554311211 233334455555666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002761 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267 (883)
Q Consensus 227 A~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~ 267 (883)
|+..++......+ ....+..+-+.|.+.|+.++|...|+
T Consensus 104 Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666544322221 22334445555666666666666554
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.48 E-value=0.1 Score=49.76 Aligned_cols=93 Identities=16% Similarity=0.073 Sum_probs=44.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 002761 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255 (883)
Q Consensus 176 yn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k 255 (883)
...+...|.+.|++++|...|+.....+ +.+...|..+-..+.+.|++++|...|+.....+ +.+..++..+-..|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3344444555555555555555544422 1233444455555555555555555555544432 2233444444445555
Q ss_pred cCCHHHHHHHHHHch
Q 002761 256 CGIPEVAFATFENME 270 (883)
Q Consensus 256 ~G~~e~A~~lf~~M~ 270 (883)
.|+.+.|...|+...
T Consensus 98 ~g~~~~A~~~~~~al 112 (135)
T TIGR02552 98 LGEPESALKALDLAI 112 (135)
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555444
No 134
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.47 E-value=0.19 Score=58.47 Aligned_cols=256 Identities=16% Similarity=0.108 Sum_probs=169.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHH
Q 002761 114 YTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDAN 193 (883)
Q Consensus 114 ~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~ 193 (883)
+.++|.+.+|.-.|+........ +...|-.|-...+..++-..|...+.+..+.....-.+.-+|--.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 35678888888888877665321 45567777777777777778888888777754322226677777888899988999
Q ss_pred HHHHHHHhCCCC-----C---CHHHHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002761 194 KVFLRGAKGGLR-----A---TDEIYDLMIAEDCKAGDHSNALEIAYEME-AAGRMATTFHFNHLLSCQATCGIPEVAFA 264 (883)
Q Consensus 194 ~lf~~M~~~gi~-----p---d~~tyn~LI~a~~k~g~~eeA~~lf~~M~-~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~ 264 (883)
+.|+.-.....+ + +...=++ ..+.....+....++|-++. ..+..+|.-+++.|--.|--.|.++.|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 988876542210 0 0000000 12222333455566666654 55656778888888888999999999999
Q ss_pred HHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH--HHHHHHHHHHHcCCHHHHHH
Q 002761 265 TFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK--TYALLVECFTKYCAVTEAIR 341 (883)
Q Consensus 265 lf~~M~~g~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~--Ty~~LI~a~~k~G~~eeA~~ 341 (883)
.|+...+ +.| |...||-|-..++... +-++|+.-|++.++ ++|+-+ -||. --+|...|.+++|..
T Consensus 452 cf~~AL~----v~Pnd~~lWNRLGAtLAN~~---~s~EAIsAY~rALq----LqP~yVR~RyNl-gIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 452 CFEAALQ----VKPNDYLLWNRLGATLANGN---RSEEAISAYNRALQ----LQPGYVRVRYNL-GISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHh----cCCchHHHHHHhhHHhcCCc---ccHHHHHHHHHHHh----cCCCeeeeehhh-hhhhhhhhhHHHHHH
Confidence 9998773 244 6788999999999988 77799999999986 888843 3444 446889999999999
Q ss_pred HHHHHHhCCCCCccccccCC--CCcHHHHHHHHHHHcCCHHHHHHH
Q 002761 342 HFRALQNYEGGTKVLHNEGN--FGDPLSLYLRALCREGRIIELLEA 385 (883)
Q Consensus 342 lf~~M~~~~~~~~~~~~~~~--~~dtYn~LI~~y~~~G~~~eA~~l 385 (883)
+|-.......... .++..+ ....|.+|=.++.-.++.+-+.+.
T Consensus 520 hlL~AL~mq~ks~-~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 520 HLLEALSMQRKSR-NHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHhhhccc-ccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 8876653211100 001111 122677776666666666544433
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.47 E-value=0.32 Score=60.71 Aligned_cols=220 Identities=10% Similarity=0.033 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 002761 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVE 181 (883)
Q Consensus 103 d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty-~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~ 181 (883)
+...|-.||..|...+++++|.++.+.-.. ..|+...+ -.+-..+.+.++...+..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh----------------hhhh
Confidence 456788888888888888888888875444 35554432 2222245555554444433 2222
Q ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 002761 182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261 (883)
Q Consensus 182 ~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~ 261 (883)
......++.-+..+...|...+ -+...+-++..+|-+.|+.++|..+++++.+.. .-|..+.|-+-..|+.. ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2222222322222223333311 223455666666767777777777777776665 33566666666666666 6777
Q ss_pred HHHHHHHchhCCCCCCCCHHHHHHH---HHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002761 262 AFATFENMEYGEDYMKPDTETYNCV---IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338 (883)
Q Consensus 262 A~~lf~~M~~g~~gi~pd~~tyn~L---I~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~ee 338 (883)
|.+++.+... .. -|..-|+.+ ...||... +++++.-+++.+.+... .|..--+.++--|-..|-...++++
T Consensus 168 A~~m~~KAV~--~~--i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~-~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 168 AITYLKKAIY--RF--IKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGH-REFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHHHHHHH--HH--HhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhh-hccchhHHHHHHHHHHHhhhhhhhH
Confidence 7666665541 10 011112221 22233332 22344555555555542 3555556666777788888888889
Q ss_pred HHHHHHHHHhCC
Q 002761 339 AIRHFRALQNYE 350 (883)
Q Consensus 339 A~~lf~~M~~~~ 350 (883)
+..+|+.+.+..
T Consensus 242 ~i~iLK~iL~~~ 253 (906)
T PRK14720 242 VIYILKKILEHD 253 (906)
T ss_pred HHHHHHHHHhcC
Confidence 999988887644
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.40 E-value=2.8 Score=48.73 Aligned_cols=153 Identities=9% Similarity=0.063 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHH
Q 002761 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDV 302 (883)
Q Consensus 224 ~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eA 302 (883)
.+.....+.++...-..--..+|..+|+.--+..-+..|..+|.+.. +.+..+ +++.++++|.-||... -.-|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR--~~~r~~hhVfVa~A~mEy~cskD----~~~A 420 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAR--EDKRTRHHVFVAAALMEYYCSKD----KETA 420 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHh--hccCCcchhhHHHHHHHHHhcCC----hhHH
Confidence 44455555555543333234578888999999999999999999999 666666 8999999999999875 3579
Q ss_pred HHHHHHhHhccCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHH
Q 002761 303 AELLGMMVEDHKRLQPNVKTY-ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381 (883)
Q Consensus 303 l~lf~~M~~~~~gi~Pd~~Ty-~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~e 381 (883)
+++|.-=.+ --+|.-.| ...++-+.+.++=..|..+|+........+. +....|..+|+-=..-|++..
T Consensus 421 frIFeLGLk----kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~------ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 421 FRIFELGLK----KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD------KSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred HHHHHHHHH----hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh------hhHHHHHHHHHHHHhcccHHH
Confidence 999987655 23455444 6778889999999999999999987633322 123379999999999999999
Q ss_pred HHHHHHHHhhC
Q 002761 382 LLEALEAMAKD 392 (883)
Q Consensus 382 A~~lf~~M~~~ 392 (883)
++++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 99999888543
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.37 E-value=0.15 Score=49.83 Aligned_cols=124 Identities=15% Similarity=0.017 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH---HHHHH
Q 002761 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE---TLIALARLFGSKGLATKGLEILAAMEKINYDIRQ---AWLIL 179 (883)
Q Consensus 106 tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~---ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv---tyn~L 179 (883)
.|..++..+ ..++...+...++.+.... +.+.+ ..-.+-..+...|++++|...|.........+.. ..-.|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677777777777776642 11212 2223446667778888888888888776644432 33455
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002761 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233 (883)
Q Consensus 180 I~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~ 233 (883)
...+...|++++|...++...... .....+...-..|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667777888888888886643322 2334555666777888888888887764
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.37 E-value=1.1 Score=56.10 Aligned_cols=234 Identities=10% Similarity=0.037 Sum_probs=118.6
Q ss_pred CCCHHHHHHHHHHHHhCCChhhHHHHHHcC--CCCChhHHHHHHHHH-HccCChHH---HHHHHHHHhcCChHHHHHHHH
Q 002761 20 QTGVVPIRSAMSSPEKKTRRKKQQRRQQKH--GDSLLSTNGSVVSAA-EQGLRLIF---MEELMQHARNRDAPRVNDVIY 93 (883)
Q Consensus 20 ~pd~~syn~LI~~~~k~g~~~~A~~M~~~g--v~Pd~~ty~~ll~a~-~~~~~~~~---~~~L~~~~k~G~~~~A~~lf~ 93 (883)
+.+...|-.||..|...+++++|.++.+.+ ..|+...+-.+...+ ...+...- ...+-......++.-+..+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 678889999999999999999997776653 345554433322221 11111111 111111222333333344444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChh
Q 002761 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR 173 (883)
Q Consensus 94 ~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pd 173 (883)
.|...+ -+...+-.|..+|-+.|+.++|..+++++.+.. .-|..+.|.+--.|+.. ++++|.+++.+.+..
T Consensus 108 ~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 108 KILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 444322 223344555555555555555555555555544 22444555555555555 555555555444432
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 002761 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA-GRMATTFHFNHLLSC 252 (883)
Q Consensus 174 vtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~-G~~Pd~~tyn~LI~~ 252 (883)
|...+++..+..++.++.... |+. ++.-..+.+.+... |..--+.++-.|-..
T Consensus 179 ---------~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 179 ---------FIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred ---------HHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 333444444444444444311 111 12222222222221 222334455566677
Q ss_pred HHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHH
Q 002761 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 291 (883)
Q Consensus 253 y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~ 291 (883)
|-+..+++++..+|..+.. --+.|.....-++..|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHH
Confidence 7777788888888887762 11335555666666665
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.37 E-value=0.8 Score=52.57 Aligned_cols=216 Identities=11% Similarity=-0.007 Sum_probs=113.0
Q ss_pred HHhcCC-hHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhc
Q 002761 79 HARNRD-APRVNDVIYDMI---AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG--VRPLHETLIALARLFGSK 152 (883)
Q Consensus 79 ~~k~G~-~~~A~~lf~~M~---~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~G--i~Pd~~ty~~LI~a~~~~ 152 (883)
+.+.|. .....+.|+++. ..|-.|....-+.= .-..++.++...-+.|...+ -.|+...+...+.+....
T Consensus 212 L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THP----lp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~ 287 (484)
T COG4783 212 LVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHP----LPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEA 287 (484)
T ss_pred HHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCC----CchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhcc
Confidence 444443 344556666666 33333333222111 11234445554445554322 234555555555554443
Q ss_pred CCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHH
Q 002761 153 GLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIA 231 (883)
Q Consensus 153 g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf 231 (883)
..-..+..++..-.+.+ .+..-|..-+ .+...|.+++|+..++.+... .|+. .-+......+.+.++..+|.+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~-~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 288 LPNQQAADLLAKRSKRG-GLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred ccccchHHHHHHHhCcc-chHHHHHHHH-HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 33333333333322211 1111333333 344567777777777776653 2444 44445556677777777777777
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761 232 YEMEAAGRMAT-TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310 (883)
Q Consensus 232 ~~M~~~G~~Pd-~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~ 310 (883)
+.+... .|+ ....-.+-.+|.+.|+..+|.++++... ...+-|...|..|-.+|...|+ ..++..-..++.
T Consensus 364 ~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~---~~~p~dp~~w~~LAqay~~~g~---~~~a~~A~AE~~ 435 (484)
T COG4783 364 KKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYL---FNDPEDPNGWDLLAQAYAELGN---RAEALLARAEGY 435 (484)
T ss_pred HHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCCCchHHHHHHHHHHHhCc---hHHHHHHHHHHH
Confidence 777664 344 4455556677777777777777777665 2335566777777777777773 334444444443
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=1.1 Score=47.83 Aligned_cols=251 Identities=13% Similarity=0.040 Sum_probs=144.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHH
Q 002761 113 AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLED 191 (883)
Q Consensus 113 a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~ee 191 (883)
-|.-.|.+..++..-...... +-+...-.-+-++|...|..... ...+.... .|.. ..-.+-..+..-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 333445665555543332221 13344444555666666654322 22222222 2222 22222222222333332
Q ss_pred -HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 192 -ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 192 -A~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
-..+.+.+......-+.+.-..-...|+..|++++|++...... +.-....=+..+.|..+++.|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555544333333333333455888999999998877521 22233333445567788999999999999
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002761 271 YGEDYMKPDTETYNCVIQAYTRAE-SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349 (883)
Q Consensus 271 ~g~~gi~pd~~tyn~LI~ay~~~G-~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~ 349 (883)
+ --+..|.+-|..+|.+.- .-+++.+|+-+|++|-+ ...|+..+.+....++...|++++|..+++....+
T Consensus 165 ~-----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 165 Q-----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred c-----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4 456677777777766531 11268899999999965 58999999999999999999999999999998754
Q ss_pred CCCCccccccCCCCcHHHHHHHHHHHcCCHH-HHHHHHHHHhhC
Q 002761 350 EGGTKVLHNEGNFGDPLSLYLRALCREGRII-ELLEALEAMAKD 392 (883)
Q Consensus 350 ~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~-eA~~lf~~M~~~ 392 (883)
.. +.+++...+|..-...|... --.+.+.+++..
T Consensus 237 d~---------~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 237 DA---------KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred cC---------CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 32 12233444555445555543 344555555444
No 141
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.32 E-value=0.1 Score=51.11 Aligned_cols=92 Identities=11% Similarity=-0.145 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 002761 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD 223 (883)
Q Consensus 144 ~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~ 223 (883)
.+-.++...|++++|...|............+|..+-.++.+.|++++|...|+...... +.+..++..+-.++.+.|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 344455556666666666666555443322255556666666666666666666655422 1233555555555666666
Q ss_pred hHHHHHHHHHHHH
Q 002761 224 HSNALEIAYEMEA 236 (883)
Q Consensus 224 ~eeA~~lf~~M~~ 236 (883)
+++|...|+....
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655554
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.29 E-value=0.063 Score=45.55 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=37.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCH
Q 002761 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYL 189 (883)
Q Consensus 110 LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~ 189 (883)
+...+...|++++|..+|.+..... +.+...+..+...+...++++.|...+....+.......++..+...+...|+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3334444455555555554443321 112233334444444444444444444444443322112344444444444444
Q ss_pred HHHHHHHHHH
Q 002761 190 EDANKVFLRG 199 (883)
Q Consensus 190 eeA~~lf~~M 199 (883)
+.|...|...
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 143
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.23 E-value=0.57 Score=54.61 Aligned_cols=253 Identities=14% Similarity=0.149 Sum_probs=162.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL-HETLIALARLFGSKGLAT 156 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd-~~ty~~LI~a~~~~g~~~ 156 (883)
.+.+.|++..|.-.|+.-.... +-+...|--|-...+.+++-..|+..+++-.+ +.|+ ....-.|--.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHH
Confidence 5788999999999999988765 34677888888888888888888888887665 4554 455667777778888888
Q ss_pred HHHHHHHHHHHcCCChhHHHHHH--H-------HHHHHCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChHH
Q 002761 157 KGLEILAAMEKINYDIRQAWLIL--V-------EELVRNKYLEDANKVFLRGAK-GGLRATDEIYDLMIAEDCKAGDHSN 226 (883)
Q Consensus 157 ~A~~l~~~m~~~g~~pdvtyn~L--I-------~~y~k~G~~eeA~~lf~~M~~-~gi~pd~~tyn~LI~a~~k~g~~ee 226 (883)
.|...++.-++..++-- |..- . ..+.....+....++|-++.. .+..+|...++.|---|--.|.+++
T Consensus 371 ~Al~~L~~Wi~~~p~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 88888877765432110 0000 0 111122224445556655543 3433555556666666677788888
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHH-HHHHHHHHHHHcCCcccHHHHHH
Q 002761 227 ALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE-TYNCVIQAYTRAESYDRVQDVAE 304 (883)
Q Consensus 227 A~~lf~~M~~~G~~P-d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~-tyn~LI~ay~~~G~~d~~~eAl~ 304 (883)
|...|+..... +| |..+||-|-..++...+.++|..-|.+..+ ++|+-+ ++--|--.|...|.|+ +|.+
T Consensus 449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~yk---EA~~ 519 (579)
T KOG1125|consen 449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYK---EAVK 519 (579)
T ss_pred HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHH---HHHH
Confidence 88888877764 33 567788888888888888888888877663 455432 2223444566777443 6665
Q ss_pred HHHHhH----h---ccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002761 305 LLGMMV----E---DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 344 (883)
Q Consensus 305 lf~~M~----~---~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~ 344 (883)
.|-..+ + ...+..++...|.+|=.++.-.++.|.+.+...
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 554422 0 003555677777777777777777776665553
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.17 E-value=0.075 Score=45.04 Aligned_cols=89 Identities=16% Similarity=0.076 Sum_probs=39.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002761 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258 (883)
Q Consensus 179 LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~ 258 (883)
+...|...|++++|..+|.+..+.. +.+...+..+...+...+++++|.+.|........ .+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHh
Confidence 3344444445555555554444321 11123444444444444555555555544444321 122344444445555555
Q ss_pred HHHHHHHHHHc
Q 002761 259 PEVAFATFENM 269 (883)
Q Consensus 259 ~e~A~~lf~~M 269 (883)
.+.|...|...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.12 E-value=1.8 Score=52.90 Aligned_cols=221 Identities=13% Similarity=0.037 Sum_probs=123.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHH--HHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 002761 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEEL--VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228 (883)
Q Consensus 151 ~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y--~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~ 228 (883)
..+++..|.+..+.+.+. -|+..|...+.+| .|.|+.++|..+++.....+.. |..|..++-..|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 344555666666555544 2333444444433 3566666666666665544332 5566666666677777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC-cc------
Q 002761 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV----AFATFENMEYGEDYMKPDTETYNCVIQAYTRAES-YD------ 297 (883)
Q Consensus 229 ~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~----A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~-~d------ 297 (883)
.+|+..... -|+......+..+|.+-+.+.+ |.+++... +.+.+.+=++|+-+.+.-. .+
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-------pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-------PKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CcccchHHHHHHHHHHhccCCcccccch
Confidence 777666543 3555555666666666666544 33344322 3344444455555544321 11
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhCCC-CCccccccCCCCcHHHHHHHHHHH
Q 002761 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA-LQNYEG-GTKVLHNEGNFGDPLSLYLRALCR 375 (883)
Q Consensus 298 ~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~-M~~~~~-~~~~~~~~~~~~dtYn~LI~~y~~ 375 (883)
...-|.+.++.+.++ .|-.-+..-.-.-+..+...|.+++|..++.. ..+.-. .+.. .-|--++.+..
T Consensus 169 ~l~LA~~m~~~~l~~-~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~---------l~~~~~dllk~ 238 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEK-KGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLY---------LENKKLDLLKL 238 (932)
T ss_pred hHHHHHHHHHHHhcc-CCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchH---------HHHHHHHHHHH
Confidence 112355566777764 34222233333334556778999999999833 322211 1110 12345777888
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 002761 376 EGRIIELLEALEAMAKDN 393 (883)
Q Consensus 376 ~G~~~eA~~lf~~M~~~G 393 (883)
.+++.+-.++-.++...|
T Consensus 239 l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKG 256 (932)
T ss_pred hcChHHHHHHHHHHHHhC
Confidence 899999999988888888
No 146
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.93 E-value=0.1 Score=57.20 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Q 002761 245 HFNHLLSCQATCGIPEVAFATFENM 269 (883)
Q Consensus 245 tyn~LI~~y~k~G~~e~A~~lf~~M 269 (883)
.|...|..=.+.|+++.+..|..++
T Consensus 109 iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 109 IWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444333
No 147
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.76 E-value=0.21 Score=54.63 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHH
Q 002761 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAG-VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEE 182 (883)
Q Consensus 105 ~tyn~LI~a~~~~g~~~~A~~lf~~M~~~G-i~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~ 182 (883)
.+|-.+|...-+.+..+.|..+|.+.+..+ +....+...++|.-+ ..++.+.|..||+...+. +..+. .|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578889999999999999999999998654 344555555555443 346777799999998876 34445 88899999
Q ss_pred HHHCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002761 183 LVRNKYLEDANKVFLRGAKGGLRATD---EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253 (883)
Q Consensus 183 y~k~G~~eeA~~lf~~M~~~gi~pd~---~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y 253 (883)
+.+.++.+.|..+|++.... +.++. ..|...|.-=.+.|+++.+.++...+.+. .|+......+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999998765 33322 59999999999999999999999998875 34433333344433
No 148
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.60 E-value=4.8 Score=44.49 Aligned_cols=162 Identities=14% Similarity=0.083 Sum_probs=92.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcC
Q 002761 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294 (883)
Q Consensus 215 I~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G 294 (883)
+..+.-.|+...|......+.+-. +-|...|-.--.+|...|.+..|..=+....+ - -.-|+.++--+-.-+...|
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask--L-s~DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASK--L-SQDNTEGHYKISQLLYTVG 237 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh--c-cccchHHHHHHHHHHHhhh
Confidence 344555677777777777777653 22666677777777888888777655554431 1 1334555555666667777
Q ss_pred CcccHHHHHHHHHHhHhccCCCCCCHHHHHHH-----------H--HHHHHcCCHHHHHHHHHHHHhCCCC-CccccccC
Q 002761 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALL-----------V--ECFTKYCAVTEAIRHFRALQNYEGG-TKVLHNEG 360 (883)
Q Consensus 295 ~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~L-----------I--~a~~k~G~~eeA~~lf~~M~~~~~~-~~~~~~~~ 360 (883)
.++.++...++-++ +.||....-.. - ......+.+-++..-.+...+.... +.+..+
T Consensus 238 ---d~~~sL~~iRECLK----ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~-- 308 (504)
T KOG0624|consen 238 ---DAENSLKEIRECLK----LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN-- 308 (504)
T ss_pred ---hHHHHHHHHHHHHc----cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeee--
Confidence 55576666666654 56765432111 0 1223345555555555555544332 222111
Q ss_pred CCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761 361 NFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393 (883)
Q Consensus 361 ~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G 393 (883)
.+..+-..|...|++.+|++...+.++-.
T Consensus 309 ----~~r~~c~C~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 309 ----GFRVLCTCYREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred ----eeheeeecccccCCHHHHHHHHHHHHhcC
Confidence 23345556667788888888777776543
No 149
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.46 E-value=0.5 Score=47.51 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 002761 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL--HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVE 181 (883)
Q Consensus 104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd--~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~ 181 (883)
...|..+...|...|++++|+..|++.......+. ...+..+...+.+.|+++.|...+.+..+........+..+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 44677777778888889999888888776543332 3567777888888888888888888887754332226666777
Q ss_pred HHHHCCCHHHHHH
Q 002761 182 ELVRNKYLEDANK 194 (883)
Q Consensus 182 ~y~k~G~~eeA~~ 194 (883)
.|...|+...+..
T Consensus 115 ~~~~~g~~~~a~~ 127 (172)
T PRK02603 115 IYHKRGEKAEEAG 127 (172)
T ss_pred HHHHcCChHhHhh
Confidence 7777776544443
No 150
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.42 E-value=8.3 Score=47.54 Aligned_cols=187 Identities=14% Similarity=0.063 Sum_probs=127.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A 158 (883)
+.|.|+.++|..+++.....+.. |..|..++-..|-..++.++|..+|++... .-|+..-...+..+|.|.+.+.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHH
Confidence 55889999999999988876644 889999999999999999999999998765 468888888999999999887654
Q ss_pred HHHHHHHHHcCCChhH--HHHHHHHHHHHCC----------CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChH
Q 002761 159 LEILAAMEKINYDIRQ--AWLILVEELVRNK----------YLEDANKVFLRGAKGGLRA-TDEIYDLMIAEDCKAGDHS 225 (883)
Q Consensus 159 ~~l~~~m~~~g~~pdv--tyn~LI~~y~k~G----------~~eeA~~lf~~M~~~gi~p-d~~tyn~LI~a~~k~g~~e 225 (883)
.++=-+|-+. ++-+. -|+ +|+.+.+.- -+.-|.+.++.+.+.+=+- +..-.-.-...+-..|+++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ 207 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQ 207 (932)
T ss_pred HHHHHHHHHh-CCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHH
Confidence 4433333331 11111 333 333333311 1345777777777654111 1111222223345677899
Q ss_pred HHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 226 NALEIA-YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 226 eA~~lf-~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
+|.+++ ....+.-..-+...-|--++.+.+++++.+-.++-.++.
T Consensus 208 eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 208 EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999 445454445566677788899999999988877777666
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.41 E-value=0.39 Score=44.06 Aligned_cols=21 Identities=19% Similarity=0.244 Sum_probs=8.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 002761 111 VVAYTLNGDHEGAMHSLKREL 131 (883)
Q Consensus 111 I~a~~~~g~~~~A~~lf~~M~ 131 (883)
...+.+.|++++|...|..+.
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~ 29 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFL 29 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333344444444444444443
No 152
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.28 E-value=1.4 Score=51.04 Aligned_cols=181 Identities=11% Similarity=0.001 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002761 86 PRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG---DHEGAMHSLKRELSAG-VRPLHETLIALARLFGSKGLATKGLEI 161 (883)
Q Consensus 86 ~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g---~~~~A~~lf~~M~~~G-i~Pd~~ty~~LI~a~~~~g~~~~A~~l 161 (883)
+++..+++.....-..-+..+|..+.+-=-..- ..+.....++++...- +.|+ .+|..+|+..-+..-+..|+.+
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHH
Confidence 566666666554322234444444433211111 2555666666655432 3443 5788888888888889999999
Q ss_pred HHHHHHcCCCh-hH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761 162 LAAMEKINYDI-RQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238 (883)
Q Consensus 162 ~~~m~~~g~~p-dv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G 238 (883)
|.+..+.+..+ .+ +++++|.-||. ++..-|.++|+--.+. . +|. .--+.-++-+...++-..|..+|+.....+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-F-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-c-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999888777 66 88899988884 6778899999764442 2 343 444567778888899999999999999887
Q ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 239 RMAT--TFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 239 ~~Pd--~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
+.|+ ...|..+|+-=.+-|++..+.++-+++.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 6665 4689999999999999999988877765
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.25 E-value=0.29 Score=55.45 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=36.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHH
Q 002761 116 LNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195 (883)
Q Consensus 116 ~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~l 195 (883)
..|++++|+.+|++.....- -+...|..+..+|.+.|++++|...++++++........|..+-.+|.+.|++++|...
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444444444444443211 12333444444444444444444444444443322111444444444444555555554
Q ss_pred HHHHHh
Q 002761 196 FLRGAK 201 (883)
Q Consensus 196 f~~M~~ 201 (883)
|++..+
T Consensus 93 ~~~al~ 98 (356)
T PLN03088 93 LEKGAS 98 (356)
T ss_pred HHHHHH
Confidence 444443
No 154
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.22 E-value=4.6 Score=43.26 Aligned_cols=178 Identities=14% Similarity=0.029 Sum_probs=93.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCChhHHH---HHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--c--
Q 002761 149 FGSKGLATKGLEILAAMEKINYDIRQAW---LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK--A-- 221 (883)
Q Consensus 149 ~~~~g~~~~A~~l~~~m~~~g~~pdvty---n~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k--~-- 221 (883)
+.+.|+++.|...|+.+...-..+.... -.+..+|.+.+++++|...|++..+....-..+-|...+.|.+. .
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD 121 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence 3445666666666666666443332221 23445566667777777777666653211112334334444331 0
Q ss_pred -------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHH
Q 002761 222 -------------GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288 (883)
Q Consensus 222 -------------g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ 288 (883)
.+...+.+-+ .++..+|.-|=...-..+|..-+..+.. .=...--.+..
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~------------~~~~~li~~yP~S~ya~~A~~rl~~l~~------~la~~e~~ia~ 183 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAF------------RDFSKLVRGYPNSQYTTDATKRLVFLKD------RLAKYELSVAE 183 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHH------------HHHHHHHHHCcCChhHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 0111111111 2334444445545555566555544441 11111113455
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347 (883)
Q Consensus 289 ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~ 347 (883)
-|.+.| ...-|+.-|+.+++...+..........++.+|.+.|..++|..+...+.
T Consensus 184 ~Y~~~~---~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 184 YYTKRG---AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHcC---chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 577777 55578888888887543444445556677788888888888888776554
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.21 E-value=0.42 Score=43.82 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 002761 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327 (883)
Q Consensus 248 ~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI 327 (883)
.+...+.+.|++++|...|..+.....+-......+..+...+.+.| +..+|+..|........+.......+..+.
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG---KYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 33444444455555555554443100000001123333444455555 333555555544431000000122333334
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 002761 328 ECFTKYCAVTEAIRHFRALQN 348 (883)
Q Consensus 328 ~a~~k~G~~eeA~~lf~~M~~ 348 (883)
.++.+.|+.++|..+++.+.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 444455555555555555544
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.09 E-value=2.6 Score=46.11 Aligned_cols=134 Identities=14% Similarity=0.099 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----CC
Q 002761 175 AWLILVEELVRN-KYLEDANKVFLRGAK----GGLRAT--DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM-----AT 242 (883)
Q Consensus 175 tyn~LI~~y~k~-G~~eeA~~lf~~M~~----~gi~pd--~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~-----Pd 242 (883)
.+..+-..|-.. |+++.|...|.+-.+ .| .+. ..++.-+...+.+.|++++|.++|++....-.. .+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 444555566666 777777777766532 22 111 145666777888899999999999888765432 22
Q ss_pred HH-HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC--HHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761 243 TF-HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD--TETYNCVIQAYTRAESYDRVQDVAELLGMMV 310 (883)
Q Consensus 243 ~~-tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd--~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~ 310 (883)
+. .|-..+-++...|++..|.+.|+.......++..+ ...-..||.+| ..|+.+...+++.-|+.+.
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccC
Confidence 22 22233335666788999999998876312233332 23344455554 4556677778877777764
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.05 E-value=0.81 Score=45.97 Aligned_cols=82 Identities=13% Similarity=-0.013 Sum_probs=34.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002761 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRAT--DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253 (883)
Q Consensus 176 yn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd--~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y 253 (883)
|..+...|.+.|++++|...|++.......+. ...|..+...+.+.|++++|...+.+...... -+...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 34444444444555555555544443221111 13444444445555555555555544444311 1233333444444
Q ss_pred HHcCC
Q 002761 254 ATCGI 258 (883)
Q Consensus 254 ~k~G~ 258 (883)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.01 E-value=0.55 Score=46.90 Aligned_cols=94 Identities=17% Similarity=0.063 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 002761 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP--LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVE 181 (883)
Q Consensus 104 ~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~P--d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~ 181 (883)
...|..+...+...|++++|+..|++.......| ...++..+-..+...|+.++|...+....+.......+++.+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4566777777778888999998888876553222 23467777788888888888888888887653222225666666
Q ss_pred HHH-------HCCCHHHHHHHHH
Q 002761 182 ELV-------RNKYLEDANKVFL 197 (883)
Q Consensus 182 ~y~-------k~G~~eeA~~lf~ 197 (883)
.|. +.|+++.|...|+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 666 6666665544444
No 159
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=5.5 Score=42.47 Aligned_cols=189 Identities=13% Similarity=0.070 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHh---CC-CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHHH
Q 002761 188 YLEDANKVFLRGAK---GG-LRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC-QATCGIPEV 261 (883)
Q Consensus 188 ~~eeA~~lf~~M~~---~g-i~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~-y~k~G~~e~ 261 (883)
+.++..+++.+|.. .| ..++. ..|--++-+....|+.+.|...++.+...- |...-.-.|=.+ +--.|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhh
Confidence 44555555555532 23 34444 344455556666677777777777776653 332211111111 234577888
Q ss_pred HHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002761 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341 (883)
Q Consensus 262 A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~ 341 (883)
|.++++.+. +.. +-|.++|--=+...-..| +-.+|++-+.+..+ -+.-|...|.-+-..|...|++++|.-
T Consensus 105 A~e~y~~lL--~dd-pt~~v~~KRKlAilka~G---K~l~aIk~ln~YL~---~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 105 AIEYYESLL--EDD-PTDTVIRKRKLAILKAQG---KNLEAIKELNEYLD---KFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HHHHHHHHh--ccC-cchhHHHHHHHHHHHHcC---CcHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 888888877 332 556777776666666666 44477777777776 577788888888888888888888888
Q ss_pred HHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761 342 HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393 (883)
Q Consensus 342 lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G 393 (883)
.++++.-..+.....+. -|.-+.-..+..-+++-|.++|.+-.+..
T Consensus 176 ClEE~ll~~P~n~l~f~------rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 176 CLEELLLIQPFNPLYFQ------RLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHcCCCcHHHHH------HHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 88888643222211110 11222222233445667777777776554
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.90 E-value=4.6 Score=47.80 Aligned_cols=99 Identities=11% Similarity=0.021 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCChhhHHHHHHcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 002761 26 IRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPR 105 (883)
Q Consensus 26 yn~LI~~~~k~g~~~~A~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~ 105 (883)
+.+-+-.|..+|.+++|.+.---|+.-+..-+ |-........++.++......|.-.+-+...-+++|+++|-.|+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~--LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRE--LAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHH--HHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 44445566778888888554443443333221 1111122223333333322233333334444456667777667665
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 002761 106 SFHGLVVAYTLNGDHEGAMHSLKR 129 (883)
Q Consensus 106 tyn~LI~a~~~~g~~~~A~~lf~~ 129 (883)
... ..|+-.|++.+|-++|.+
T Consensus 637 LlA---~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 637 LLA---DVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHH---HHHHhhhhHHHHHHHHHH
Confidence 432 334556777777777654
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.81 E-value=0.073 Score=46.70 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=7.5
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 002761 146 ARLFGSKGLATKGLEILAA 164 (883)
Q Consensus 146 I~a~~~~g~~~~A~~l~~~ 164 (883)
..+|.+.|++++|..+++.
T Consensus 32 a~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3333444444444444333
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.63 E-value=1.2 Score=42.36 Aligned_cols=86 Identities=22% Similarity=0.188 Sum_probs=40.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHHCCC
Q 002761 114 YTLNGDHEGAMHSLKRELSAGVRPL--HETLIALARLFGSKGLATKGLEILAAMEKINYD---IRQAWLILVEELVRNKY 188 (883)
Q Consensus 114 ~~~~g~~~~A~~lf~~M~~~Gi~Pd--~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~---pdvtyn~LI~~y~k~G~ 188 (883)
+-..|+.++|+.+|++-...|+... ...+..+-+.+...|++++|..+++........ .......+-.++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 3445555555555555555554433 223444445555555555555555555543221 11111222234455555
Q ss_pred HHHHHHHHHHH
Q 002761 189 LEDANKVFLRG 199 (883)
Q Consensus 189 ~eeA~~lf~~M 199 (883)
.++|...+-..
T Consensus 91 ~~eAl~~~l~~ 101 (120)
T PF12688_consen 91 PKEALEWLLEA 101 (120)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 163
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.30 E-value=11 Score=41.89 Aligned_cols=192 Identities=12% Similarity=0.050 Sum_probs=102.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 002761 146 ARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224 (883)
Q Consensus 146 I~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~ 224 (883)
+..+...|+...|......+++..+ -+. .|..--.+|...|.+..|..=++...+..- -+..++--+-.-+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhH
Confidence 3344455666666666666655432 122 444555566666666666554444333111 2223444444455556666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH-----------HHHHH--HHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHH---HHHH
Q 002761 225 SNALEIAYEMEAAGRMATTFHF-----------NHLLS--CQATCGIPEVAFATFENMEYGEDYMKPDTETYN---CVIQ 288 (883)
Q Consensus 225 eeA~~lf~~M~~~G~~Pd~~ty-----------n~LI~--~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn---~LI~ 288 (883)
+.++...++..+. .||...+ -+|-+ .....+++-++.+-.+...+ ..-.-..++|| .+-.
T Consensus 240 ~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk--~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 240 ENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK--NEPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--cCCcccceeeeeeheeee
Confidence 6666666655543 3332211 11111 12344556666665555441 11111223333 3444
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002761 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQNYE 350 (883)
Q Consensus 289 ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~ 350 (883)
+|...| ...+|++...+.+. +.|| +.++.--..+|.-...++.|+.=|+...+..
T Consensus 316 C~~~d~---~~~eAiqqC~evL~----~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 316 CYREDE---QFGEAIQQCKEVLD----IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred cccccC---CHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 555566 45588888888875 6676 6666666678888888888888888877643
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.25 E-value=1.3 Score=50.29 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=78.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002761 77 MQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156 (883)
Q Consensus 77 ~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~ 156 (883)
..+...|+++.|..+|++..+.. +-+...|..+-.+|.+.|++++|+..+++..... +.+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34667899999999999999865 3567888889999999999999999999988753 225678888899999999999
Q ss_pred HHHHHHHHHHHcCC
Q 002761 157 KGLEILAAMEKINY 170 (883)
Q Consensus 157 ~A~~l~~~m~~~g~ 170 (883)
.|...|++.++...
T Consensus 88 eA~~~~~~al~l~P 101 (356)
T PLN03088 88 TAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998754
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.18 E-value=1.5 Score=43.70 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002761 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRA--TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252 (883)
Q Consensus 175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~p--d~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~ 252 (883)
.|..+...+...|++++|...|++.......+ ...+|..+-..|...|++++|...++...... +....+++.+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 45555666666677777777666665432111 12356666666666677777776666665432 1123344444444
Q ss_pred HH-------HcCCHHHHHHHH
Q 002761 253 QA-------TCGIPEVAFATF 266 (883)
Q Consensus 253 y~-------k~G~~e~A~~lf 266 (883)
|. +.|+++.|...|
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHH
Confidence 44 555555443333
No 166
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=94.17 E-value=7.6 Score=48.37 Aligned_cols=180 Identities=15% Similarity=0.104 Sum_probs=123.4
Q ss_pred CHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Q 002761 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA-TDEIYDLMIAEDCKAGDHSNALEIAY 232 (883)
Q Consensus 154 ~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~p-d~~tyn~LI~a~~k~g~~eeA~~lf~ 232 (883)
+...|+..|=+..+.....-..|..|-..|+..-+...|.+.|+..-+ +.| +...+-.....|++...++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 366666666666555444445899999999998899999999998766 333 34678889999999999999998822
Q ss_pred HHHHcCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761 233 EMEAAGRMATTFHFNHLL--SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310 (883)
Q Consensus 233 ~M~~~G~~Pd~~tyn~LI--~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~ 310 (883)
.--+. -..-...+|.+- -.|.+.++...|..-|+... +--+.|...|..+..+|...| +...|++.|.+..
T Consensus 551 ~~~qk-a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sG---ry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 551 RAAQK-APAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL---RTDPKDYNLWLGLGEAYPESG---RYSHALKVFTKAS 623 (1238)
T ss_pred HHhhh-chHHHHHhhhhhccccccCccchhhHHHHHHHHh---cCCchhHHHHHHHHHHHHhcC---ceehHHHhhhhhH
Confidence 21111 011122233332 23667788888888887765 122457888999999999999 5558999998875
Q ss_pred hccCCCCCCHHHHHHH-H-HHHHHcCCHHHHHHHHHHHH
Q 002761 311 EDHKRLQPNVKTYALL-V-ECFTKYCAVTEAIRHFRALQ 347 (883)
Q Consensus 311 ~~~~gi~Pd~~Ty~~L-I-~a~~k~G~~eeA~~lf~~M~ 347 (883)
. +.|+.. |.-. + ..-|..|.+.+|...+..+.
T Consensus 624 ~----LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 624 L----LRPLSK-YGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred h----cCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4 677653 3222 1 23567888898888887775
No 167
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=13 Score=45.09 Aligned_cols=251 Identities=15% Similarity=0.092 Sum_probs=154.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH--H
Q 002761 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVR----PLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ--A 175 (883)
Q Consensus 102 pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~----Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv--t 175 (883)
-..++|..+-...-..|+++-|..+++.=...+.. .+..-+...+.-+...|+.+...+++-.|.+.-...+. +
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 34567888887778899999999888653322211 12334667778888889988888877766653211110 0
Q ss_pred ------HHHHHHHHHHCC------------CHHHHHHHHH--HHH----hCCCCCCHHHHHHHHHHHHHcCChH---HH-
Q 002761 176 ------WLILVEELVRNK------------YLEDANKVFL--RGA----KGGLRATDEIYDLMIAEDCKAGDHS---NA- 227 (883)
Q Consensus 176 ------yn~LI~~y~k~G------------~~eeA~~lf~--~M~----~~gi~pd~~tyn~LI~a~~k~g~~e---eA- 227 (883)
-+.|-.-|+|.. +-..+...|. ... ..|..|+ ....-++|.+..... +|
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHH
Confidence 011111222211 1111211111 100 0122222 223334444443311 11
Q ss_pred ------HHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHH
Q 002761 228 ------LEIAYEME-AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300 (883)
Q Consensus 228 ------~~lf~~M~-~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~ 300 (883)
+.+.+.+. +.|......|.+--+.-+...|+-..|.++-.+.+ .||-.-|--=+.+++..+ +++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk------ipdKr~~wLk~~aLa~~~---kwe 732 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK------IPDKRLWWLKLTALADIK---KWE 732 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC------CcchhhHHHHHHHHHhhh---hHH
Confidence 12222232 23444455566777777888999999999999999 899999999999999999 666
Q ss_pred HHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHH
Q 002761 301 DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 380 (883)
Q Consensus 301 eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~ 380 (883)
+..++-+.+.. .+-|.-++.+|.+.|+.++|.+++..... +.-.+.+|.+.|.+.
T Consensus 733 eLekfAkskks--------PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----------------l~ekv~ay~~~~~~~ 787 (829)
T KOG2280|consen 733 ELEKFAKSKKS--------PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----------------LQEKVKAYLRVGDVK 787 (829)
T ss_pred HHHHHHhccCC--------CCCchhHHHHHHhcccHHHHhhhhhccCC-----------------hHHHHHHHHHhccHH
Confidence 76555444421 45677789999999999999999876642 234789999999999
Q ss_pred HHHHHHHHH
Q 002761 381 ELLEALEAM 389 (883)
Q Consensus 381 eA~~lf~~M 389 (883)
+|.++--+=
T Consensus 788 eAad~A~~~ 796 (829)
T KOG2280|consen 788 EAADLAAEH 796 (829)
T ss_pred HHHHHHHHh
Confidence 998765443
No 168
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.85 E-value=0.3 Score=52.16 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=51.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002761 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE 160 (883)
Q Consensus 81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~ 160 (883)
+.+.++-....++.|.+.|+..|..+|+.||..+-+..-. |.. .|..+.-.|-+ +-+-+..
T Consensus 84 ~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~n-vfQ~~F~HYP~--QQ~C~I~ 144 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQN-VFQKVFLHYPQ--QQNCAIK 144 (406)
T ss_pred ccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cHH-HHHHHHhhCch--hhhHHHH
Confidence 4466677777888899999999999999998876654321 110 11111111111 1223455
Q ss_pred HHHHHHHcCCChhH-HHHHHHHHHHHCCC
Q 002761 161 ILAAMEKINYDIRQ-AWLILVEELVRNKY 188 (883)
Q Consensus 161 l~~~m~~~g~~pdv-tyn~LI~~y~k~G~ 188 (883)
++++|...|+.||. +-..||+++++.+.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 66666666666665 55566666665554
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.78 E-value=0.26 Score=40.98 Aligned_cols=51 Identities=22% Similarity=0.273 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002761 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201 (883)
Q Consensus 151 ~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~ 201 (883)
+.|++++|..+|..+.+.......++-.+..+|.+.|++++|..+++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555666666655555433222444555666666666666666665554
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.78 E-value=3.5 Score=49.18 Aligned_cols=145 Identities=13% Similarity=0.078 Sum_probs=94.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHC--------CCHHHHHHHHHHH
Q 002761 133 AGVRPLHETLIALARLFGSKG-----LATKGLEILAAMEKINYDIRQAWLILVEELVRN--------KYLEDANKVFLRG 199 (883)
Q Consensus 133 ~Gi~Pd~~ty~~LI~a~~~~g-----~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~--------G~~eeA~~lf~~M 199 (883)
.+.+.|...|...+++..... ....|..+|++.++........|..+..+|... .++..+.+.....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345667788888888865432 366888899988886543323555443333221 1223344444433
Q ss_pred HhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCC
Q 002761 200 AKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278 (883)
Q Consensus 200 ~~~-gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~p 278 (883)
... ....+...|..+--.+...|++++|...|++....+ |+...|..+-..|...|+.++|...|++..+ +.|
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~----L~P 484 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN----LRP 484 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCC
Confidence 221 123344677777666667789999999999988875 6788888899999999999999999887552 345
Q ss_pred CHHHH
Q 002761 279 DTETY 283 (883)
Q Consensus 279 d~~ty 283 (883)
...||
T Consensus 485 ~~pt~ 489 (517)
T PRK10153 485 GENTL 489 (517)
T ss_pred CCchH
Confidence 54454
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.68 E-value=5.6 Score=47.10 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002761 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390 (883)
Q Consensus 319 d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~ 390 (883)
+..+...+-.-+-+...+-.|-++|..|-. -.++++.....|++.+|+.+-++..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD-----------------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc-----------------HHHHhhheeecccchHhHhhhhhCc
Confidence 344555555556667778889999988854 2468888899999999999988763
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.67 E-value=0.16 Score=44.44 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHcCCC-hhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHH
Q 002761 153 GLATKGLEILAAMEKINYD-IRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALE 229 (883)
Q Consensus 153 g~~~~A~~l~~~m~~~g~~-pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~ 229 (883)
|+++.|..+++++.+.... ++. .+-.+..+|.+.|++++|..+++. .+ ..|+. ...-.+-.+|.+.|++++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555544331 122 333345555555555555555544 11 11111 122222344445555555555
Q ss_pred HHH
Q 002761 230 IAY 232 (883)
Q Consensus 230 lf~ 232 (883)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 173
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=93.54 E-value=18 Score=45.34 Aligned_cols=285 Identities=11% Similarity=-0.007 Sum_probs=148.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIAL--ARLFGSKGLAT 156 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~L--I~a~~~~g~~~ 156 (883)
|-..++...|..-|....+.. +.|...|..|..+|.++|++..|+++|.+... +.|+. +|... --.-|..|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHH
Confidence 455667777777777766554 34677888888888888888888888877544 45543 23222 12235677888
Q ss_pred HHHHHHHHHHHcCCCh-----h-H-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----hH
Q 002761 157 KGLEILAAMEKINYDI-----R-Q-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD----HS 225 (883)
Q Consensus 157 ~A~~l~~~m~~~g~~p-----d-v-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~----~e 225 (883)
+|...+...+...-.- + . ++--+...+.-.|-...|...|+.-.+ ...++++...+.... ..
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie-------~f~~~l~h~~~~~~~~Wi~as 720 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE-------SFIVSLIHSLQSDRLQWIVAS 720 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-------HHHHHHHHhhhhhHHHHHHHh
Confidence 8888777665431100 0 1 222222223333434444444444332 122223322222111 23
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH---H---HHHHHHHHchhCCCCCCCCHHHHHHHHHHHHH----cCC
Q 002761 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP---E---VAFATFENMEYGEDYMKPDTETYNCVIQAYTR----AES 295 (883)
Q Consensus 226 eA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~---e---~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~----~G~ 295 (883)
.|..+|.... .. .|+.....+|..-.-+.+.. + -|.+.+-.-. .+.-+..+|.-|...|.+ .|.
T Consensus 721 dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl----sl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 721 DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL----SLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH----HHhhccchHHHHhHHHHHHHHHcCC
Confidence 4444555444 11 33333333333323333332 1 1111111111 112235566555555554 221
Q ss_pred c-ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHH
Q 002761 296 Y-DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 374 (883)
Q Consensus 296 ~-d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~ 374 (883)
. ++...|+..+.+-++. ..-|..+|+. +...+..|++.-|...|-.-+-.. ..|..+|..+--.+.
T Consensus 795 t~~~~~~Ai~c~KkaV~L---~ann~~~Wna-LGVlsg~gnva~aQHCfIks~~se---------p~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSL---CANNEGLWNA-LGVLSGIGNVACAQHCFIKSRFSE---------PTCHCQWLNLGVLVL 861 (1238)
T ss_pred cchhHHHHHHHHHHHHHH---hhccHHHHHH-HHHhhccchhhhhhhhhhhhhhcc---------ccchhheeccceeEE
Confidence 1 1345788888887751 2234455554 444577788877777765443221 222235777777788
Q ss_pred HcCCHHHHHHHHHHHhhCC
Q 002761 375 REGRIIELLEALEAMAKDN 393 (883)
Q Consensus 375 ~~G~~~eA~~lf~~M~~~G 393 (883)
+..+++.|...|.......
T Consensus 862 ~n~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred ecccHHHhhHHHHhhhhcC
Confidence 8999999999999886654
No 174
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=15 Score=40.87 Aligned_cols=295 Identities=14% Similarity=0.054 Sum_probs=171.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHH
Q 002761 117 NGDHEGAMHSLKRELSAGVRPLHETLIALAR-LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195 (883)
Q Consensus 117 ~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~-a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~l 195 (883)
.-.+.+|++++.+.... .|+-...|.-+. +|.+...++-+.++++--.+.-...+..-|.......+.=.-..|..-
T Consensus 164 R~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 34678999999988764 345555554444 556777788888888876665333333566665555553222233333
Q ss_pred HHHHHhCC--------------------------CCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 002761 196 FLRGAKGG--------------------------LRATD-----EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTF 244 (883)
Q Consensus 196 f~~M~~~g--------------------------i~pd~-----~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~ 244 (883)
..++...+ +-|.. ..--.|+--|.+.+++.+|..+.+++.- ..|-.+
T Consensus 242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Ey 319 (557)
T KOG3785|consen 242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEY 319 (557)
T ss_pred HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHH
Confidence 34433221 01111 1112233346778888888887765421 223333
Q ss_pred HHHHHHHH-----HHHcCCHHHHHHHHHHchhCCCCCCCCHH-HHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCC
Q 002761 245 HFNHLLSC-----QATCGIPEVAFATFENMEYGEDYMKPDTE-TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318 (883)
Q Consensus 245 tyn~LI~~-----y~k~G~~e~A~~lf~~M~~g~~gi~pd~~-tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P 318 (883)
..-.++.+ .....++..|.+.|.-.- +++..-|.. ---+|.+.+.-.- +.++++-.++.+.. =+.-
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG--~Sa~ecDTIpGRQsmAs~fFL~~---qFddVl~YlnSi~s---YF~N 391 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVG--ESALECDTIPGRQSMASYFFLSF---QFDDVLTYLNSIES---YFTN 391 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc--ccccccccccchHHHHHHHHHHH---HHHHHHHHHHHHHH---HhcC
Confidence 33333322 222235677888887665 555443332 2345666666666 44588888888765 2333
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHH-HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 002761 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL-SLYLRALCREGRIIELLEALEAMAKDNQPVP 397 (883)
Q Consensus 319 d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtY-n~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~ 397 (883)
|...--.+..+++-.|.+.+|.++|-.+....+.... +| +.|...|.++|+++-|.+++-+|.. |
T Consensus 392 dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~---------~Y~s~LArCyi~nkkP~lAW~~~lk~~t-----~ 457 (557)
T KOG3785|consen 392 DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKI---------LYKSMLARCYIRNKKPQLAWDMMLKTNT-----P 457 (557)
T ss_pred cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhH---------HHHHHHHHHHHhcCCchHHHHHHHhcCC-----c
Confidence 3333335678999999999999999877643333333 34 4567889999999999998877732 2
Q ss_pred CcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccce
Q 002761 398 PRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGF 463 (883)
Q Consensus 398 p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ 463 (883)
.+.+ +| .-+++.-|.+.+..--|-+-|+++.. +.|+..-|
T Consensus 458 ~e~f-------sL-----------------LqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 458 SERF-------SL-----------------LQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred hhHH-------HH-----------------HHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 2221 11 23455666666666555555554433 56766668
No 175
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=20 Score=42.04 Aligned_cols=102 Identities=11% Similarity=0.016 Sum_probs=77.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL-HETLIALARLFGSKGLATK 157 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd-~~ty~~LI~a~~~~g~~~~ 157 (883)
.+..|+++.|...|-+-.... ++|.+.|+.=..+|++.|++++|++=-.+-++ +.|+ ...|+-.-.++.-.|++++
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 556799999999999888765 45888899999999999999998875544433 5666 3468888888888899999
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHH
Q 002761 158 GLEILAAMEKINYDIRQAWLILVEEL 183 (883)
Q Consensus 158 A~~l~~~m~~~g~~pdvtyn~LI~~y 183 (883)
|..-|.+=++........++-|..++
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99998877765433333566666655
No 176
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.43 E-value=0.65 Score=44.52 Aligned_cols=79 Identities=9% Similarity=-0.012 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH---------------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002761 209 EIYDLMIAEDCKAGDHSNALEIAYEME---------------AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273 (883)
Q Consensus 209 ~tyn~LI~a~~k~g~~eeA~~lf~~M~---------------~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~ 273 (883)
.++.++|-++++.|+++....+++..= .....|+..+..+++.+|+..|++..|.++.+...+ .
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~-~ 81 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR-K 81 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH-H
Confidence 444555555555555555544443321 112334444444444444444444444444444442 2
Q ss_pred CCCCCCHHHHHHHHH
Q 002761 274 DYMKPDTETYNCVIQ 288 (883)
Q Consensus 274 ~gi~pd~~tyn~LI~ 288 (883)
-++.-+..+|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 233334444444444
No 177
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=21 Score=41.81 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=80.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH--HHHHHHHHHHHCCCHH
Q 002761 113 AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLE 190 (883)
Q Consensus 113 a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv--tyn~LI~~y~k~G~~e 190 (883)
+.+..|+++.|+.+|.+..... ++|.+-|+.=..+|++.|++++|.+=-.+-++. .|+. .|+-+-.++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 4567899999999999877654 348999999999999999999998866655554 5554 8999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 002761 191 DANKVFLRGAKGGLRATD-EIYDLMIAED 218 (883)
Q Consensus 191 eA~~lf~~M~~~gi~pd~-~tyn~LI~a~ 218 (883)
+|..-|.+-.+. .|+. ..++-+..++
T Consensus 88 eA~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 999999987663 3443 6666666665
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.03 E-value=4.9 Score=47.98 Aligned_cols=136 Identities=13% Similarity=-0.067 Sum_probs=95.1
Q ss_pred CCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 002761 99 GLSPGPRSFHGLVVAYTLNG-----DHEGAMHSLKRELSAGVRPL-HETLIALARLFGSKG--------LATKGLEILAA 164 (883)
Q Consensus 99 G~~pd~~tyn~LI~a~~~~g-----~~~~A~~lf~~M~~~Gi~Pd-~~ty~~LI~a~~~~g--------~~~~A~~l~~~ 164 (883)
+.+.|...|...+.|..... ....|..+|++..+. .|+ ...|..+..++.... ++..+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44678899999999876532 377899999998874 565 344444433332211 22334444444
Q ss_pred HHHcCCCh-hH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761 165 MEKINYDI-RQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238 (883)
Q Consensus 165 m~~~g~~p-dv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G 238 (883)
.......+ +. .|.++--.+...|++++|...|++....+ |+...|..+-..+...|+.++|.+.+++.....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 33322122 23 67777666667899999999999999854 788999999999999999999999998887653
No 179
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.80 E-value=0.88 Score=44.19 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002761 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165 (883)
Q Consensus 107 yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m 165 (883)
...++..+...|++++|..+...+.... +-|...|..+|.+|...|+...|.++|..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3334444444444555544444444321 113444444455555555555444444443
No 180
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.74 E-value=1.1 Score=47.94 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC
Q 002761 205 RATDEIYDLMIAEDCK-----AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 279 (883)
Q Consensus 205 ~pd~~tyn~LI~a~~k-----~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd 279 (883)
..|..+|-+++..|.. .+.++-....++.|.+.|+.-|..+|+.||+.+-|-. +.|.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk------------------fiP~ 125 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK------------------FIPQ 125 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc------------------cccH
Confidence 4566777777777764 3556666677888889999999999998887654432 2222
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCH
Q 002761 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336 (883)
Q Consensus 280 ~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~ 336 (883)
.+ +-.+.-.|-+.. +-+++++++|.. .|+.||..+-..||++|.+.+-.
T Consensus 126 nv-fQ~~F~HYP~QQ-----~C~I~vLeqME~--hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 126 NV-FQKVFLHYPQQQ-----NCAIKVLEQMEW--HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HH-HHHHHhhCchhh-----hHHHHHHHHHHH--cCCCCchHHHHHHHHHhcccccc
Confidence 21 222222333332 357788888887 68888888888888888887754
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.69 E-value=2.9 Score=39.73 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=44.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCChhH---HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC---H-HHHHHHHHHHHH
Q 002761 148 LFGSKGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLEDANKVFLRGAKGGLRAT---D-EIYDLMIAEDCK 220 (883)
Q Consensus 148 a~~~~g~~~~A~~l~~~m~~~g~~pdv---tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd---~-~tyn~LI~a~~k 220 (883)
++-..|+.++|..+|++....|+.... .+-.+-+.|...|++++|..+|++..... |+ . .....+--++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence 444556666666666666666654432 34445555666666666666666655421 22 1 111112234455
Q ss_pred cCChHHHHHHHHHHH
Q 002761 221 AGDHSNALEIAYEME 235 (883)
Q Consensus 221 ~g~~eeA~~lf~~M~ 235 (883)
.|+.++|+..+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666665554433
No 182
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=13 Score=39.91 Aligned_cols=275 Identities=11% Similarity=0.011 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHc---CCCCChhHHHHHHHHH--HccCChHHHHH-HHH--HHhcCChHHHHHHHHH
Q 002761 23 VVPIRSAMSSPEKKTRRKKQQRRQQK---HGDSLLSTNGSVVSAA--EQGLRLIFMEE-LMQ--HARNRDAPRVNDVIYD 94 (883)
Q Consensus 23 ~~syn~LI~~~~k~g~~~~A~~M~~~---gv~Pd~~ty~~ll~a~--~~~~~~~~~~~-L~~--~~k~G~~~~A~~lf~~ 94 (883)
...|+.=+..+.+-+++++|..-+.. --.||.+ |...=..+ .+..-+.|... +++ ..+.|+..+.+.-+..
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34466667788888888888322221 1112211 11110111 11122233322 222 2344555555544444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH
Q 002761 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ 174 (883)
Q Consensus 95 M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv 174 (883)
+. ..-.-+|.-+-.....+..++++++-. ....+.+++.+.-.|.+.-...++...++...+-+.
T Consensus 148 L~--------~~V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p 212 (366)
T KOG2796|consen 148 LK--------TVVSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP 212 (366)
T ss_pred HH--------HHHHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH
Confidence 43 112233444444444466777776533 245566777777777777777888888876654444
Q ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002761 175 -AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI-----AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248 (883)
Q Consensus 175 -tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI-----~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~ 248 (883)
....|...-.+.|+.+.|...|+...+..-+.|..+++.++ ..|.-.+++..|...|.+.....-. |.+.-|.
T Consensus 213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~Nn 291 (366)
T KOG2796|consen 213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNN 291 (366)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhch
Confidence 56777777788888888888888776543344444444443 3345567788888888777665322 3444443
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCC--cccHHHHHHHHHHhHhccCCCCCCHH
Q 002761 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES--YDRVQDVAELLGMMVEDHKRLQPNVK 321 (883)
Q Consensus 249 LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~--~d~~~eAl~lf~~M~~~~~gi~Pd~~ 321 (883)
=.-+..-.|+..+|.+..+.|.+ ..|...+-++++--++..-. +....+....+.+-+. |..||.+
T Consensus 292 KALcllYlg~l~DAiK~~e~~~~----~~P~~~l~es~~~nL~tmyEL~Ys~~~~~k~~l~~~ia---~~~~d~f 359 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQLEAMVQ----QDPRHYLHESVLFNLTTMYELEYSRSMQKKQALLEAVA---GKEGDSF 359 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----cCCccchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHh---ccCCCcc
Confidence 33333345788889888888873 24555555544333222110 0011133344555554 7778764
No 183
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=92.62 E-value=31 Score=42.12 Aligned_cols=261 Identities=12% Similarity=0.055 Sum_probs=171.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCHHHH-------------------HH----HHHHHHHC
Q 002761 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYT---LNGDHEGA-------------------MH----SLKRELSA 133 (883)
Q Consensus 80 ~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~---~~g~~~~A-------------------~~----lf~~M~~~ 133 (883)
.+.++...+..-+......+..-+..++..+-.++. ..++.+++ .- ++.++...
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLK 317 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence 344555666666666655555555555555444332 23333333 22 23344445
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 002761 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213 (883)
Q Consensus 134 Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~ 213 (883)
.+.-|...|..|--+..+.|++..+-+.|++....-+.-...|+.+-..|..+|.-..|..+.++-....-.|+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 56778888999999999999999999999988876554444899999999999999999999988655433355554444
Q ss_pred HHHHHH--HcCChHHHHHHHHHHHHc--CCC--CCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHchhCCCCC
Q 002761 214 MIAEDC--KAGDHSNALEIAYEMEAA--GRM--ATTFHFNHLLSCQATC-----------GIPEVAFATFENMEYGEDYM 276 (883)
Q Consensus 214 LI~a~~--k~g~~eeA~~lf~~M~~~--G~~--Pd~~tyn~LI~~y~k~-----------G~~e~A~~lf~~M~~g~~gi 276 (883)
|+...| +.+.+++++..-...... |.. .....|-.+--+|... ....++.+.+++..+ ..+-
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-~d~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-FDPT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 554444 346677777766666551 111 1223333333344322 234567777777763 4556
Q ss_pred CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002761 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348 (883)
Q Consensus 277 ~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~ 348 (883)
.|++..|-++-.+.. + ....|++..++..+ -+-.-+...|..|.-.++-.+++.+|+.+.+....
T Consensus 477 dp~~if~lalq~A~~--R---~l~sAl~~~~eaL~--l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQ--R---QLTSALDYAREALA--LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred CchHHHHHHHHHHHH--H---hHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 788888877765544 4 56799999999887 34455777888887888889999999999887764
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.34 E-value=0.46 Score=39.42 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=26.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002761 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS 132 (883)
Q Consensus 81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~ 132 (883)
+.|+++.|..+|+.+.... +-+...+-.+..+|.+.|++++|..+++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555442 22444455555555555555555555555544
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.31 E-value=20 Score=39.14 Aligned_cols=150 Identities=16% Similarity=0.150 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCChh-H-HHHH
Q 002761 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSK-GLATKGLEILAAMEKI----NYDIR-Q-AWLI 178 (883)
Q Consensus 106 tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~-g~~~~A~~l~~~m~~~----g~~pd-v-tyn~ 178 (883)
.|...+..|...|++..|-.++.++ -..|-.. |+++.|.+.|.+.... |-... . ++..
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 3455556677777777776666554 3455566 7899999988877643 42222 2 6778
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC--HHHHHH
Q 002761 179 LVEELVRNKYLEDANKVFLRGAKGGLR-----ATDE-IYDLMIAEDCKAGDHSNALEIAYEMEAA--GRMAT--TFHFNH 248 (883)
Q Consensus 179 LI~~y~k~G~~eeA~~lf~~M~~~gi~-----pd~~-tyn~LI~a~~k~g~~eeA~~lf~~M~~~--G~~Pd--~~tyn~ 248 (883)
+...+.+.|++++|..+|++....-.. .+.. .|-..+-++...|++..|.+.|+..... ++..+ ......
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 888999999999999999998764322 2222 2223333556679999999999988754 33322 345566
Q ss_pred HHHHHHH--cCCHHHHHHHHHHch
Q 002761 249 LLSCQAT--CGIPEVAFATFENME 270 (883)
Q Consensus 249 LI~~y~k--~G~~e~A~~lf~~M~ 270 (883)
||.+|-. ...+..|..-|+.+.
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHhCCHHHHHHHHHHHcccC
Confidence 7777654 345777888888877
No 186
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.12 E-value=1.3 Score=42.48 Aligned_cols=50 Identities=16% Similarity=0.071 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 002761 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA-AGRMATTFHFNHLLSCQ 253 (883)
Q Consensus 204 i~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~-~G~~Pd~~tyn~LI~~y 253 (883)
+.|+..+..+++.+|+.+|++..|+++.+...+ -++.-+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345555555555555555555555555544432 23444455555555443
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.07 E-value=1.6 Score=47.39 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=71.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHH
Q 002761 114 YTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDA 192 (883)
Q Consensus 114 ~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA 192 (883)
+.+.+++.+|+..|.+.+.. .| |.+-|..=-.+|++.|.++.|.+-....+........+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 45678888888888887764 33 5566677778888888888888777777665433333888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH
Q 002761 193 NKVFLRGAKGGLRATDEIYDLMI 215 (883)
Q Consensus 193 ~~lf~~M~~~gi~pd~~tyn~LI 215 (883)
.+.|++-.+ +.|+..+|-.=+
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHH
Confidence 888887766 667777665433
No 188
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.86 E-value=9 Score=39.65 Aligned_cols=172 Identities=13% Similarity=0.059 Sum_probs=78.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCChh--H-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC
Q 002761 149 FGSKGLATKGLEILAAMEKINYDIR--Q-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD--EIYDLMIAEDCKAGD 223 (883)
Q Consensus 149 ~~~~g~~~~A~~l~~~m~~~g~~pd--v-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~--~tyn~LI~a~~k~g~ 223 (883)
+...|++.+|...|..+...-.... . ..-.+..+|-+.|+++.|...|+++.+.- |+. .-+...+.|.+....
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHh
Confidence 3455666666666666665432211 1 44455666666777777777776665532 221 223333333322111
Q ss_pred hHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCc
Q 002761 224 HSNALEIAYEMEAAGRMAT-------TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296 (883)
Q Consensus 224 ~eeA~~lf~~M~~~G~~Pd-------~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~ 296 (883)
..... ....| ...|..+|.-|=......+|...+..+.. .=...--.+..-|.+.|
T Consensus 93 ~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~------~la~~e~~ia~~Y~~~~-- 155 (203)
T PF13525_consen 93 IPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN------RLAEHELYIARFYYKRG-- 155 (203)
T ss_dssp HHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH------HHHHHHHHHHHHHHCTT--
T ss_pred Cccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHcc--
Confidence 11110 00000 12445555556666666666655555541 00111112445567777
Q ss_pred ccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002761 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340 (883)
Q Consensus 297 d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~ 340 (883)
....|..-|+.+++...+..-.......++.+|-+.|..+.|.
T Consensus 156 -~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 -KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp --HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred -cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4557777777777631111111123355666777777766443
No 189
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=91.71 E-value=39 Score=41.29 Aligned_cols=341 Identities=14% Similarity=0.062 Sum_probs=187.4
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHc--CCC--CChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002761 22 GVVPIRSAMSSPEKKTRRKKQQRRQQK--HGD--SLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIA 97 (883)
Q Consensus 22 d~~syn~LI~~~~k~g~~~~A~~M~~~--gv~--Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~ 97 (883)
....|+.+-..|+..|.-..|..+++. +.. |+..+--.++...|-. ++........|+ ..|...+..+.
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e-~l~~~eegldYA-----~kai~~~~~~~- 428 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIE-RLKLVEEGLDYA-----QKAISLLGGQR- 428 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHh-chhhhhhHHHHH-----HHHHHHhhhhh-
Confidence 345577777777777776677555544 334 4434433333333222 222222222222 11222221111
Q ss_pred CCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002761 98 AGLSPGPRSFHGLVVAYTLN-----------GDHEGAMHSLKRELSAG-VRPLHETLIALARLFGSKGLATKGLEILAAM 165 (883)
Q Consensus 98 ~G~~pd~~tyn~LI~a~~~~-----------g~~~~A~~lf~~M~~~G-i~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m 165 (883)
+ ......|-.+--+|... ....++++.+++..+.+ -.|+..-|-++-. +-.++++.|.....+.
T Consensus 429 -~-~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~--A~~R~l~sAl~~~~ea 504 (799)
T KOG4162|consen 429 -S-HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQY--AEQRQLTSALDYAREA 504 (799)
T ss_pred -h-hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH--HHHHhHHHHHHHHHHH
Confidence 1 12233444444444321 12345666777665543 4455555555544 3456788888888888
Q ss_pred HHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCC------------------CCHHHHHHHHHHHHH-----
Q 002761 166 EKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKG-GLR------------------ATDEIYDLMIAEDCK----- 220 (883)
Q Consensus 166 ~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~-gi~------------------pd~~tyn~LI~a~~k----- 220 (883)
.+.+-..+. .|..|.-.+...+++.+|+.+.+.-... |.. --..|...++.-+-.
T Consensus 505 L~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q 584 (799)
T KOG4162|consen 505 LALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ 584 (799)
T ss_pred HHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh
Confidence 887555555 7888877888888888888887765431 210 001222222222210
Q ss_pred -cC-----------------ChHHHHHHHHHH--------HHcC---------CC--CC------HHHHHHHHHHHHHcC
Q 002761 221 -AG-----------------DHSNALEIAYEM--------EAAG---------RM--AT------TFHFNHLLSCQATCG 257 (883)
Q Consensus 221 -~g-----------------~~eeA~~lf~~M--------~~~G---------~~--Pd------~~tyn~LI~~y~k~G 257 (883)
.+ +..+|....+.+ ...| +. |+ ...|....+.+.+.+
T Consensus 585 ~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~ 664 (799)
T KOG4162|consen 585 QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSG 664 (799)
T ss_pred hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 00 000111000000 0001 00 11 122344556677777
Q ss_pred CHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH-HHHHHHHHHHHcCCH
Q 002761 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK-TYALLVECFTKYCAV 336 (883)
Q Consensus 258 ~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~-Ty~~LI~a~~k~G~~ 336 (883)
..++|...+.+.. ....-....|.-.-..+...| ..++|.+.|..... +.|+.+ ..+++-.++.+.|+.
T Consensus 665 ~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~---~~~EA~~af~~Al~----ldP~hv~s~~Ala~~lle~G~~ 734 (799)
T KOG4162|consen 665 NDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKG---QLEEAKEAFLVALA----LDPDHVPSMTALAELLLELGSP 734 (799)
T ss_pred CchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHH---hhHHHHHHHHHHHh----cCCCCcHHHHHHHHHHHHhCCc
Confidence 7788876666655 111223344444445566667 56689988888765 778754 567788899999988
Q ss_pred HHHHH--HHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761 337 TEAIR--HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392 (883)
Q Consensus 337 eeA~~--lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~ 392 (883)
..|.. ++..+.+.+. .|++.|-.+-..+-+.|+.+.|-+.|..-.+.
T Consensus 735 ~la~~~~~L~dalr~dp---------~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 735 RLAEKRSLLSDALRLDP---------LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred chHHHHHHHHHHHhhCC---------CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 88888 8888887543 23446889999999999999999999876554
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.55 E-value=3.3 Score=44.22 Aligned_cols=143 Identities=10% Similarity=-0.016 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--
Q 002761 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC-- 252 (883)
Q Consensus 175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~-- 252 (883)
+-+.++..+.-.|.+.-...++.+..+...+-+.+..+.|.+.-.+.|+.+.|...|+...+..-+.|..+++.++..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445666666667777777888888877666666777777888888888888888888877765545555555555443
Q ss_pred ---HHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHH
Q 002761 253 ---QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327 (883)
Q Consensus 253 ---y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI 327 (883)
|.-..++..|.+.|+++.. . -..|.+.-|.=.-...-.| ++.+|++....|.. ..|...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~--~-D~~~~~a~NnKALcllYlg---~l~DAiK~~e~~~~----~~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILR--M-DPRNAVANNNKALCLLYLG---KLKDALKQLEAMVQ----QDPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccc--c-CCCchhhhchHHHHHHHHH---HHHHHHHHHHHHhc----cCCccchhhhHH
Confidence 4556777888888877762 1 1233444443222333345 66688888888865 556666655554
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.27 E-value=0.9 Score=37.39 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=19.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 002761 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199 (883)
Q Consensus 150 ~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M 199 (883)
.+.|++++|...|+++++........+..+-.++.+.|++++|..+|++.
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444444444333111113344444444444444444444443
No 192
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=91.27 E-value=5.4 Score=39.66 Aligned_cols=87 Identities=11% Similarity=-0.042 Sum_probs=46.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHH
Q 002761 113 AYTLNGDHEGAMHSLKRELSAGVRPLHE-TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLED 191 (883)
Q Consensus 113 a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~-ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~ee 191 (883)
.+...|++++|..+|+-+... .|... -|-.|--+|-..|++.+|...|.......+..-..+-.+-.+|.+.|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence 344556666666666655442 33322 233444444445666666666666665553222344455556666666666
Q ss_pred HHHHHHHHHh
Q 002761 192 ANKVFLRGAK 201 (883)
Q Consensus 192 A~~lf~~M~~ 201 (883)
|.+-|+....
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.10 E-value=24 Score=37.72 Aligned_cols=167 Identities=8% Similarity=-0.019 Sum_probs=91.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHH-
Q 002761 111 VVAYTLNGDHEGAMHSLKRELSAGVRPLHETL---IALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVR- 185 (883)
Q Consensus 111 I~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty---~~LI~a~~~~g~~~~A~~l~~~m~~~g~~-pdvtyn~LI~~y~k- 185 (883)
...+.+.|++++|.+.|+++...-..+ .... -.+..++.+.++++.|...+++.++.... |++-|...+.+++.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 334456788888888888887642222 2222 34556777888888888888888776443 33355555555442
Q ss_pred -CC---------------CH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 002761 186 -NK---------------YL---EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246 (883)
Q Consensus 186 -~G---------------~~---eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~ty 246 (883)
.+ +. ..|+.. +..+|.-|-...-..+|...+..+... =...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~---------------~~~li~~yP~S~ya~~A~~rl~~l~~~----la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRD---------------FSKLVRGYPNSQYTTDATKRLVFLKDR----LAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHH---------------HHHHHHHCcCChhHHHHHHHHHHHHHH----HHHHH
Confidence 11 11 122233 334444454444455555544444322 00011
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 002761 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297 (883)
Q Consensus 247 n~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d 297 (883)
-.+...|-+.|.+..|..=|+.+.+.=.+.+......-.|+.+|...|..+
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~ 229 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNA 229 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChH
Confidence 144556777888877777777776311222333445556777888888444
No 194
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.09 E-value=1.3 Score=43.08 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=26.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002761 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234 (883)
Q Consensus 176 yn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M 234 (883)
...++..+...|++++|..+...+.... +-|...|..+|.+|...|+...|.++|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444445555555555555544422 123345555555555555555555555444
No 195
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.98 E-value=29 Score=38.39 Aligned_cols=132 Identities=16% Similarity=0.215 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC----ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC-
Q 002761 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCK--AG----DHSNALEIAYEMEAAGR---MATTFHFNHLLSCQATCGI- 258 (883)
Q Consensus 189 ~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k--~g----~~eeA~~lf~~M~~~G~---~Pd~~tyn~LI~~y~k~G~- 258 (883)
+.+...+++.|.+.|++.+..+|-+..-.... .. ...+|..+|+.|++.-. .++..++.+|+.+ ....
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566677888888888777666553222222 22 35678888888887642 3566777777666 3333
Q ss_pred ---HHHHHHHHHHchhCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHH
Q 002761 259 ---PEVAFATFENMEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326 (883)
Q Consensus 259 ---~e~A~~lf~~M~~g~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~L 326 (883)
.+.+..+|+.+. +.|+.+ |..-+-+-|-+++..-..+.+..+.++++.+.+ .|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~--~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~--~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLA--DAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK--NGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHH--HhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH--cCCccccccccHH
Confidence 355677777777 556655 344555555555555444456688889998888 6888777666543
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.80 E-value=31 Score=38.50 Aligned_cols=112 Identities=11% Similarity=0.026 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHH
Q 002761 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288 (883)
Q Consensus 209 ~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ 288 (883)
.+.+..|.-+...|+...|.++-.+. -.|+..-|-..|.+|+..++|++-.++... + ...+-|-.++.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-------KsPIGyepFv~ 245 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS-K-------KSPIGYEPFVE 245 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-------CCCCChHHHHH
Confidence 45666677788889988887775544 347888999999999999999887775433 2 23477888999
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347 (883)
Q Consensus 289 ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~ 347 (883)
+|.+.| ...+|..+...+ ++..-+..|.++|++.+|.+.-...+
T Consensus 246 ~~~~~~---~~~eA~~yI~k~------------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 246 ACLKYG---NKKEASKYIPKI------------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHCC---CHHHHHHHHHhC------------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999 555888776653 22456788899999999988765554
No 197
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=90.32 E-value=4.8 Score=40.03 Aligned_cols=85 Identities=9% Similarity=-0.067 Sum_probs=40.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002761 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229 (883)
Q Consensus 150 ~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~ 229 (883)
...|++++|..+|..+....+..-.-|-.|-.++-..|++.+|...|........ -|...+-.+-.++...|+.+.|.+
T Consensus 46 y~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHH
Confidence 4445555555555555444322222344444455555555555555555444321 222444444455555555555555
Q ss_pred HHHHHH
Q 002761 230 IAYEME 235 (883)
Q Consensus 230 lf~~M~ 235 (883)
-|+...
T Consensus 125 aF~~Ai 130 (157)
T PRK15363 125 ALKAVV 130 (157)
T ss_pred HHHHHH
Confidence 555444
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=89.92 E-value=1.9 Score=35.77 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCC-CHHHHHHHHHHH
Q 002761 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNK-YLEDANKVFLRG 199 (883)
Q Consensus 140 ~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G-~~eeA~~lf~~M 199 (883)
.+|..+-..+...|++++|...|.+.++........|..+-.+|.+.| ++++|...|++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344444444444555555555555444443221114444444444444 344554444443
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.84 E-value=6.4 Score=44.94 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-chhCCCCCCCCHHHH-H
Q 002761 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATFEN-MEYGEDYMKPDTETY-N 284 (883)
Q Consensus 208 ~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G-~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~-M~~g~~gi~pd~~ty-n 284 (883)
...|...|++-.+..-++.|..+|-+..+.| +.+++..++++|..||. |+...|.++|+- |.. -||...| +
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-----f~d~~~y~~ 470 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-----FPDSTLYKE 470 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-----CCCchHHHH
Confidence 3567777777777777788888888887777 56777788888877764 566677777763 331 3444333 3
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002761 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN--VKTYALLVECFTKYCAVTEAIRHFRALQNY 349 (883)
Q Consensus 285 ~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd--~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~ 349 (883)
-.+.-+...+ +-..|..+|+.-+. .+.-+ ...|..+|+-=+..|++..+..+-+.|...
T Consensus 471 kyl~fLi~in---de~naraLFetsv~---r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 471 KYLLFLIRIN---DEENARALFETSVE---RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHHhC---cHHHHHHHHHHhHH---HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 3445555556 44567777775554 33334 456777777777778777777766666543
No 200
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.82 E-value=8.1 Score=44.17 Aligned_cols=148 Identities=10% Similarity=0.076 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 002761 139 HETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY-DLMI 215 (883)
Q Consensus 139 ~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g-~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~ty-n~LI 215 (883)
...|...|+...+..-++.|+.+|....+.| +.+++ +++++|.-|+. |+..-|.++|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777888888888888888888888888 56667 88888887764 5667788888654331 2555333 4566
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 002761 216 AEDCKAGDHSNALEIAYEMEAAGRMAT--TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293 (883)
Q Consensus 216 ~a~~k~g~~eeA~~lf~~M~~~G~~Pd--~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~ 293 (883)
.-+...++-+.|..+|+.-..+ +.-+ ...|-.+|+-=.+-|++..|..+=+.|.. +.|-..+-....+-|+-.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e----~~pQen~~evF~Sry~ik 548 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE----LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH----HcCcHhHHHHHHHHHhhh
Confidence 6677788888888888844322 1112 35788888888888888888777776663 245555555566666655
Q ss_pred C
Q 002761 294 E 294 (883)
Q Consensus 294 G 294 (883)
.
T Consensus 549 ~ 549 (660)
T COG5107 549 A 549 (660)
T ss_pred c
Confidence 4
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=89.80 E-value=1.5 Score=35.96 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=39.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 002761 180 VEELVRNKYLEDANKVFLRGAKGGLRA-TDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237 (883)
Q Consensus 180 I~~y~k~G~~eeA~~lf~~M~~~gi~p-d~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~ 237 (883)
-..|.+.|++++|...|++..+.. | +...|..+-.++...|++++|...|++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677778888888888777654 4 3466777777777778888888777777654
No 202
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=89.66 E-value=12 Score=35.83 Aligned_cols=82 Identities=15% Similarity=0.045 Sum_probs=34.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 002761 145 LARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD 223 (883)
Q Consensus 145 LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~ 223 (883)
++..+.+.+.......+++.+.+.+. .+. .+|.+|..|++.. .......+.. ..+......++..|-+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444444444444444444432 222 4455555555432 1222222221 0122233334455555555
Q ss_pred hHHHHHHHHHH
Q 002761 224 HSNALEIAYEM 234 (883)
Q Consensus 224 ~eeA~~lf~~M 234 (883)
++++.-++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=88.73 E-value=28 Score=35.94 Aligned_cols=181 Identities=12% Similarity=0.048 Sum_probs=100.1
Q ss_pred HHHHHCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002761 181 EELVRNKYLEDANKVFLRGAKGGL--RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258 (883)
Q Consensus 181 ~~y~k~G~~eeA~~lf~~M~~~gi--~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~ 258 (883)
..+...|++.+|...|+.+...-. +--....-.+..++.+.|+++.|...|+...+.-..-...-+...+.+.+....
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 455678999999999999886421 111245667788888999999999999988765322222334444444332222
Q ss_pred HHHHHHHHHHchhCCCCC---CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCC
Q 002761 259 PEVAFATFENMEYGEDYM---KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335 (883)
Q Consensus 259 ~e~A~~lf~~M~~g~~gi---~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~ 335 (883)
..... .. .... ..-...+..+|.-|-.+. .+.+|...+..+... .-.. --.+..-|.+.|.
T Consensus 93 ~~~~~-----~~--~~D~~~~~~A~~~~~~li~~yP~S~---y~~~A~~~l~~l~~~-----la~~-e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 93 IPGIL-----RS--DRDQTSTRKAIEEFEELIKRYPNSE---YAEEAKKRLAELRNR-----LAEH-ELYIARFYYKRGK 156 (203)
T ss_dssp HHHHH------T--T---HHHHHHHHHHHHHHHH-TTST---THHHHHHHHHHHHHH-----HHHH-HHHHHHHHHCTT-
T ss_pred Cccch-----hc--ccChHHHHHHHHHHHHHHHHCcCch---HHHHHHHHHHHHHHH-----HHHH-HHHHHHHHHHccc
Confidence 11111 00 0000 001224455666666666 445555544444320 0001 1234567999999
Q ss_pred HHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHH
Q 002761 336 VTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELL 383 (883)
Q Consensus 336 ~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~ 383 (883)
+..|..-|+.+.+....+.... +..-.|+.+|-+.|..+.|.
T Consensus 157 y~aA~~r~~~v~~~yp~t~~~~------~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 157 YKAAIIRFQYVIENYPDTPAAE------EALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHH------HHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHCCCCchHH------HHHHHHHHHHHHhCChHHHH
Confidence 9999999999987654443221 14567889999999887544
No 204
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=88.57 E-value=1.4 Score=37.74 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Q 002761 175 AWLILVEELVRNKYLEDANKVFLRGAKG----GL-RAT-DEIYDLMIAEDCKAGDHSNALEIAYE 233 (883)
Q Consensus 175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~----gi-~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~ 233 (883)
+|+.+-..|...|++++|+..|++..+. |- .|+ ..+++.+-..|...|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555555555555555555544321 10 011 23444444445555555555554443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=88.12 E-value=5.9 Score=42.95 Aligned_cols=96 Identities=15% Similarity=-0.018 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCChh---HHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 002761 142 LIALARLFGSKGLATKGLEILAAMEKINYDIR---QAWLILVEELVRNKYLEDANKVFLRGAKGG--LRATDEIYDLMIA 216 (883)
Q Consensus 142 y~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pd---vtyn~LI~~y~k~G~~eeA~~lf~~M~~~g--i~pd~~tyn~LI~ 216 (883)
|...+..+.+.|++++|...|..+++.-.... .++-.+-..|...|++++|...|..+...- -......+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333334555555555555554432211 133344445555555555555555554321 0011122333333
Q ss_pred HHHHcCChHHHHHHHHHHHHc
Q 002761 217 EDCKAGDHSNALEIAYEMEAA 237 (883)
Q Consensus 217 a~~k~g~~eeA~~lf~~M~~~ 237 (883)
.+...|+.++|..+|+...+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555443
No 206
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.04 E-value=24 Score=33.82 Aligned_cols=119 Identities=12% Similarity=0.159 Sum_probs=67.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A 158 (883)
+...+........++.+...+ ..+...+|.+|..|++.. ....++.+.. ..+.+....+++.|.+.+.++++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHH
Confidence 334456677777777777666 356677778888877653 3344444432 12344455577777777777777
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002761 159 LEILAAMEKINYDIRQAWLILVEELVRN-KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC 219 (883)
Q Consensus 159 ~~l~~~m~~~g~~pdvtyn~LI~~y~k~-G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~ 219 (883)
.-++..+.. |...+..+... ++++.|.+.+.+- -+...|..++..+.
T Consensus 89 ~~l~~k~~~--------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 89 VELYKKDGN--------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHhhcC--------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 766655422 12222333333 6666666666551 24456666665554
No 207
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=88.00 E-value=2.5 Score=35.10 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 002761 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG-LATKGLEILAAMEKI 168 (883)
Q Consensus 103 d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g-~~~~A~~l~~~m~~~ 168 (883)
+..+|..+-..+.+.|++++|+..|.+..... +-+...|..+-.+|.+.| ++++|.+.+.+.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45677788888888888888888888877753 224556777777888888 688888888877664
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=87.81 E-value=12 Score=43.20 Aligned_cols=66 Identities=18% Similarity=0.118 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002761 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV----KTYALLVECFTKYCAVTEAIRHFRALQNY 349 (883)
Q Consensus 277 ~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~----~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~ 349 (883)
+.+...|+.+-.+|.+.| +.++|+..|++.++ +.|+. .+|..+-.+|.+.|++++|...++...+.
T Consensus 72 P~~a~a~~NLG~AL~~lG---ryeEAIa~f~rALe----L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKG---RVKDALAQFETALE----LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346778899999999999 56699999999876 66774 35888888999999999999999988763
No 209
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.68 E-value=28 Score=38.44 Aligned_cols=154 Identities=10% Similarity=0.071 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHhCCChhhH--------HHHHHcCCCCChhHHHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHH
Q 002761 20 QTGVVPIRSAMSSPEKKTRRKKQ--------QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDV 91 (883)
Q Consensus 20 ~pd~~syn~LI~~~~k~g~~~~A--------~~M~~~gv~Pd~~ty~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~l 91 (883)
.....++.+++..-.. .++++ ..|.+.|+.-+.++|-+..-.+........- -....|..+
T Consensus 57 ~~~~~~la~~l~~~~~--~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~---------~~~~ra~~i 125 (297)
T PF13170_consen 57 GNHRFILAALLDISFE--DPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYD---------EIIQRAKEI 125 (297)
T ss_pred ccHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHH---------HHHHHHHHH
Confidence 4444555555544433 46666 5666678888888777644443331111111 223678889
Q ss_pred HHHHHHCC---CCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CC--HHHHHH
Q 002761 92 IYDMIAAG---LSPGPRSFHGLVVAYTLNGD----HEGAMHSLKRELSAGVRPLHE-TLIALARLFGSK-GL--ATKGLE 160 (883)
Q Consensus 92 f~~M~~~G---~~pd~~tyn~LI~a~~~~g~----~~~A~~lf~~M~~~Gi~Pd~~-ty~~LI~a~~~~-g~--~~~A~~ 160 (883)
|+.|++.. -.++-..+.+|+.. ...+ .+.+..+|+.+...|+..+.. -+.+-+-+++.. .. +..+..
T Consensus 126 y~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~ 203 (297)
T PF13170_consen 126 YKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIE 203 (297)
T ss_pred HHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHH
Confidence 99998764 23455667777655 3333 345667777777777765433 222333333322 22 346677
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHC
Q 002761 161 ILAAMEKINYDIRQAWLILVEELVRN 186 (883)
Q Consensus 161 l~~~m~~~g~~pdvtyn~LI~~y~k~ 186 (883)
++..+.+.|+.+...+-..+..++-.
T Consensus 204 l~~~l~~~~~kik~~~yp~lGlLall 229 (297)
T PF13170_consen 204 LYNALKKNGVKIKYMHYPTLGLLALL 229 (297)
T ss_pred HHHHHHHcCCccccccccHHHHHHhc
Confidence 77778887777665333334444433
No 210
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.19 E-value=28 Score=35.03 Aligned_cols=136 Identities=14% Similarity=0.081 Sum_probs=89.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002761 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI 168 (883)
Q Consensus 89 ~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~ 168 (883)
.+.++.+.+.|++|+...|..+|..+.+.|++.. +..+...++-||.......+-.+.. ....+.++=-.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 3455566678888999999999999999988644 4455667777777766655544433 334444444444432
Q ss_pred -CCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002761 169 -NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238 (883)
Q Consensus 169 -g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G 238 (883)
+ ..+..++..+...|++-+|.++.+.... .+.+....++.+..+.++...=..+|+-...++
T Consensus 88 L~----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 LG----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hh----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 2 2566778888889999999988877533 222334567777777777666666666655543
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.08 E-value=9.5 Score=41.40 Aligned_cols=95 Identities=9% Similarity=-0.055 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHH
Q 002761 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD----EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM--ATTFHFNH 248 (883)
Q Consensus 175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~----~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~--Pd~~tyn~ 248 (883)
.|+..+..+.+.|++++|...|+.+.+.- |+. ..+--+-..|...|++++|...|..+.+.-.. .....+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 77777777777889999999999888743 443 46667788888899999999999988864211 12233334
Q ss_pred HHHHHHHcCCHHHHHHHHHHchh
Q 002761 249 LLSCQATCGIPEVAFATFENMEY 271 (883)
Q Consensus 249 LI~~y~k~G~~e~A~~lf~~M~~ 271 (883)
+...|...|+.+.|..+|+.+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567788999999999988773
No 212
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.15 E-value=29 Score=40.65 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 002761 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393 (883)
Q Consensus 319 d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~G 393 (883)
+...|..|-......|+++-|...|..... |+.|.-.|.-.|+.+.-.++.+.-...|
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD-----------------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 445555555555566666666665555543 4555555555666555555555555454
No 213
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.73 E-value=58 Score=35.44 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002761 175 AWLILVEELVRNKYLE---DANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250 (883)
Q Consensus 175 tyn~LI~~y~k~G~~e---eA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI 250 (883)
+...|+.+|...+..+ +|..+.+.+.... |+ ...|-.-|..+.+.++.+.+.+++..|...- .-....+..++
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 5556666666666544 3444555554322 22 3444444555555777777777777777652 11223344334
Q ss_pred HHH---HHcCCHHHHHHHHHHchhCCCCCCCCHHHH--HHHHHH---HHHcC---CcccHHHHHHHHHHhHhccCCCCCC
Q 002761 251 SCQ---ATCGIPEVAFATFENMEYGEDYMKPDTETY--NCVIQA---YTRAE---SYDRVQDVAELLGMMVEDHKRLQPN 319 (883)
Q Consensus 251 ~~y---~k~G~~e~A~~lf~~M~~g~~gi~pd~~ty--n~LI~a---y~~~G---~~d~~~eAl~lf~~M~~~~~gi~Pd 319 (883)
..+ ..... ..|...++.+. ...+.|....| ..++.- ..+.+ .-++++.+.+++....+. .+-+.+
T Consensus 163 ~~i~~l~~~~~-~~a~~~ld~~l--~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~-~~~~ls 238 (278)
T PF08631_consen 163 HHIKQLAEKSP-ELAAFCLDYLL--LNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS-LGKQLS 238 (278)
T ss_pred HHHHHHHhhCc-HHHHHHHHHHH--HHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH-hcCCCC
Confidence 333 33322 34444444443 22223322101 111111 11111 111244555555543321 233334
Q ss_pred HHHHHHHH-------HHHHHcCCHHHHHHHHHHHH
Q 002761 320 VKTYALLV-------ECFTKYCAVTEAIRHFRALQ 347 (883)
Q Consensus 320 ~~Ty~~LI-------~a~~k~G~~eeA~~lf~~M~ 347 (883)
..+-.++. ..+.+.++++.|.+.|+.-.
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 44433332 35678899999999987543
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=85.16 E-value=11 Score=43.69 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002761 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH----ETLIALARLFGSKGLATKGLEILAAMEKI 168 (883)
Q Consensus 103 d~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~----~ty~~LI~a~~~~g~~~~A~~l~~~m~~~ 168 (883)
+...|+.+-.+|.+.|++++|+..|++.... .|+. .+|..+-.+|...|++++|...+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666666666666666666665443 4442 24566666666666666666666665553
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=84.99 E-value=2.9 Score=35.63 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-Chh-H-HHHHHHHHHHHCCCHHHHHHHHHHHH
Q 002761 141 TLIALARLFGSKGLATKGLEILAAMEKI----NY-DIR-Q-AWLILVEELVRNKYLEDANKVFLRGA 200 (883)
Q Consensus 141 ty~~LI~a~~~~g~~~~A~~l~~~m~~~----g~-~pd-v-tyn~LI~~y~k~G~~eeA~~lf~~M~ 200 (883)
+|+.+-..|...|++++|...|++..+. |- .|. . +++.+-..|...|++++|...|++-.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555666666666666666555432 11 122 2 67777777888888888887777643
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=84.81 E-value=5.5 Score=33.30 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=8.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHH
Q 002761 179 LVEELVRNKYLEDANKVFLRG 199 (883)
Q Consensus 179 LI~~y~k~G~~eeA~~lf~~M 199 (883)
.-..|.+.|++.+|...|+..
T Consensus 35 ~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 35 RARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHHHHhccHHHHHHHHHHH
Confidence 333333333333333333333
No 217
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.04 E-value=34 Score=40.01 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 243 TFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 243 ~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
...|..|-+...++|+++-|.+.|.+..
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 3344444444444444444444444443
No 218
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.91 E-value=39 Score=36.96 Aligned_cols=98 Identities=16% Similarity=0.067 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHH---CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 002761 138 LHETLIALARLFGSKGLATKGLEILAAMEKI-NYDIRQAWLILVEELVR---NKYLEDANKVFLRGAKGGLRATDEIYDL 213 (883)
Q Consensus 138 d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~-g~~pdvtyn~LI~~y~k---~G~~eeA~~lf~~M~~~gi~pd~~tyn~ 213 (883)
|...|-.|-..|...|+...|..-|....+. |-.|++ +..+-.++.. .....++..+|+++..... -|+.+-.-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~-~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI-LLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHH
Confidence 4556666666666666666666666665554 222222 2222222111 1223456666666655321 22334444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 002761 214 MIAEDCKAGDHSNALEIAYEMEAA 237 (883)
Q Consensus 214 LI~a~~k~g~~eeA~~lf~~M~~~ 237 (883)
|-.++...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 445566666666666666666654
No 219
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.41 E-value=9.1 Score=41.76 Aligned_cols=95 Identities=19% Similarity=0.199 Sum_probs=47.0
Q ss_pred HHCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHH
Q 002761 184 VRNKYLEDANKVFLRGAKGGLRAT-DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEV 261 (883)
Q Consensus 184 ~k~G~~eeA~~lf~~M~~~gi~pd-~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~P-d~~tyn~LI~~y~k~G~~e~ 261 (883)
.+.+++.+|...|.+.++ +.|+ .+-|..=-.+|++.|.++.|.+=-+....- .| -..+|..|-.+|...|++++
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 345555555555555554 2232 344444555555555555555444433332 12 13455555555656666666
Q ss_pred HHHHHHHchhCCCCCCCCHHHHHHH
Q 002761 262 AFATFENMEYGEDYMKPDTETYNCV 286 (883)
Q Consensus 262 A~~lf~~M~~g~~gi~pd~~tyn~L 286 (883)
|.+.|.+.. .+.|+-.+|-+=
T Consensus 168 A~~aykKaL----eldP~Ne~~K~n 188 (304)
T KOG0553|consen 168 AIEAYKKAL----ELDPDNESYKSN 188 (304)
T ss_pred HHHHHHhhh----ccCCCcHHHHHH
Confidence 655555443 245555555443
No 220
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=82.90 E-value=77 Score=34.53 Aligned_cols=223 Identities=13% Similarity=0.042 Sum_probs=129.8
Q ss_pred HhcCChHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CCCCCH----
Q 002761 80 ARNRDAPRVNDVIYDMIAAG--LSPGP------RSFHGLVVAYTLNGDHEGAMHSLKRELSA--------GVRPLH---- 139 (883)
Q Consensus 80 ~k~G~~~~A~~lf~~M~~~G--~~pd~------~tyn~LI~a~~~~g~~~~A~~lf~~M~~~--------Gi~Pd~---- 139 (883)
.+.|+++.|...+.+....- ..|+. ..||.-...+.+..+++.|...+++-... ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46688888888888877532 23432 35777666666665888877776654322 234443
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002761 140 -ETLIALARLFGSKGLAT---KGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215 (883)
Q Consensus 140 -~ty~~LI~a~~~~g~~~---~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI 215 (883)
.++..++.+|...+..+ +|..+++.+.+....+-.++-.-+..+.+.++.+.+.+++.+|...- .-....+..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 35677788888777644 56667777755544433356566677777999999999999998752 21335555555
Q ss_pred HHH---HHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHH---HHHc------CCHHHHHHHHHHchhCCCCCCCCHH
Q 002761 216 AED---CKAGDHSNALEIAYEMEAAGRMATTF--HFNHLLSC---QATC------GIPEVAFATFENMEYGEDYMKPDTE 281 (883)
Q Consensus 216 ~a~---~k~g~~eeA~~lf~~M~~~G~~Pd~~--tyn~LI~~---y~k~------G~~e~A~~lf~~M~~g~~gi~pd~~ 281 (883)
..+ ... ....|...+..+....+.|... .=-.++.- ..+. .+++....+++.+.+ ..+-+.+..
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~-~~~~~ls~~ 240 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEH-SLGKQLSAE 240 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH-HhcCCCCHH
Confidence 555 333 3456777777777666666553 11112211 1121 125666666775442 122233444
Q ss_pred HHHHHHH-------HHHHcCCcccHHHHHHHHHH
Q 002761 282 TYNCVIQ-------AYTRAESYDRVQDVAELLGM 308 (883)
Q Consensus 282 tyn~LI~-------ay~~~G~~d~~~eAl~lf~~ 308 (883)
+-++++. .+.+.+ +..+|.+.|+-
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k---~y~~A~~w~~~ 271 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAK---NYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhc---CHHHHHHHHHH
Confidence 4333332 344455 34478777764
No 221
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=82.58 E-value=5.4 Score=33.35 Aligned_cols=57 Identities=25% Similarity=0.184 Sum_probs=32.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 002761 113 AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY 170 (883)
Q Consensus 113 a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~ 170 (883)
.|.+.+++++|.++++.+...+. .+...+...-..+.+.|++.+|...|....+.+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45566666666666666655421 1444455555566666666666666666665543
No 222
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.87 E-value=38 Score=34.38 Aligned_cols=94 Identities=17% Similarity=0.026 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCC----HHH
Q 002761 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD--EIYDLMIAEDCKAGDHSNALEIAYEMEAA---GRMAT----TFH 245 (883)
Q Consensus 175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~--~tyn~LI~a~~k~g~~eeA~~lf~~M~~~---G~~Pd----~~t 245 (883)
.+..+.+-|++.|+.+.|.+.|.++.+....+.. ..+-.+|....-.+++..+.....+.... |-.++ ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 7778888888888888888888888775544443 45667777777788888777776665432 21111 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 246 FNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 246 yn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
|..|. +...+++..|-++|-...
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 22222 224578888888887665
No 223
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=81.82 E-value=0.42 Score=45.10 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=38.1
Q ss_pred cchHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhhchhHHHH
Q 002761 531 AASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVD 593 (883)
Q Consensus 531 g~S~~ev~~l~~ef~~~g~~~~~~~~~l~~~l~~~~~~~~~~G~~lyvp~~~~~~~~vdee~~ 593 (883)
||||+++ |.|.+++..||++ ++...+...| |+|.++.+.++++++.+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~---------~~~~~~~~~~---~~~~~~~~~~~~~~e~~ 48 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS---------ELINKMKEEG---YVPDTKEVGHDVDEEEK 48 (116)
T ss_pred CCCccce----EEEEeCCCcCccH---------HHHHHHHHcC---CcchhhhhCCCchhhhh
Confidence 7999998 9999999999977 3444556689 99999999888877644
No 224
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.28 E-value=21 Score=40.95 Aligned_cols=211 Identities=10% Similarity=-0.043 Sum_probs=112.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh
Q 002761 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRS--FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE--TLIALARLFGS 151 (883)
Q Consensus 76 L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~t--yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~--ty~~LI~a~~~ 151 (883)
|+..++.|+++.+..++ +.|..|+... ..+.+...++.|+.+- .+.+.+.|..|+.. ...+.+...+.
T Consensus 6 L~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHH
Confidence 44556677776655554 4576666533 3455566677788753 34455667666543 12344556667
Q ss_pred cCCHHHHHHHHHHHHHcCCChhH----HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChH
Q 002761 152 KGLATKGLEILAAMEKINYDIRQ----AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI--YDLMIAEDCKAGDHS 225 (883)
Q Consensus 152 ~g~~~~A~~l~~~m~~~g~~pdv----tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~t--yn~LI~a~~k~g~~e 225 (883)
.|+.+.+..++ +.|...+. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+
T Consensus 78 ~g~~~~v~~Ll----~~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 78 EGDVKAVEELL----DLGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CCCHHHHHHHH----HcCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 88877655554 34432211 1124445556677764 4444455566655421 224555666777766
Q ss_pred HHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHH---HHHHHHHHHHcCCcccHH
Q 002761 226 NALEIAYEMEAAGRMATTFH--FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET---YNCVIQAYTRAESYDRVQ 300 (883)
Q Consensus 226 eA~~lf~~M~~~G~~Pd~~t--yn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~t---yn~LI~ay~~~G~~d~~~ 300 (883)
-+..+ .+.|..++... ..+.+...+..|+.+-+..+++ .|..++... .++++..-+..|+.+
T Consensus 150 ~v~~L----l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~------~ga~~n~~~~~~~~t~l~~A~~~~~~~--- 216 (413)
T PHA02875 150 GIELL----IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD------SGANIDYFGKNGCVAALCYAIENNKID--- 216 (413)
T ss_pred HHHHH----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh------CCCCCCcCCCCCCchHHHHHHHcCCHH---
Confidence 54444 45565444321 2234455567788776655544 333444332 124455445666432
Q ss_pred HHHHHHHHhHhccCCCCCCHH
Q 002761 301 DVAELLGMMVEDHKRLQPNVK 321 (883)
Q Consensus 301 eAl~lf~~M~~~~~gi~Pd~~ 321 (883)
+.+-+.+ .|..|+..
T Consensus 217 ----iv~~Ll~--~gad~n~~ 231 (413)
T PHA02875 217 ----IVRLFIK--RGADCNIM 231 (413)
T ss_pred ----HHHHHHH--CCcCcchH
Confidence 3444555 58877754
No 225
>PRK10635 bacterioferritin; Provisional
Probab=80.67 E-value=1.7 Score=43.44 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=55.8
Q ss_pred HHhhhhccc----hhhhhhcCCCCCchhhHHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHhcCCcHHHHHHHhhhccc
Q 002761 745 TIADAWGWT----WEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSL 820 (883)
Q Consensus 745 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (883)
...+-||+. |.+.- -.-|.+=|-++..+++.|||+|++.+..- ++. ......+|+....+
T Consensus 30 ~~~~~~G~~~la~~~~~e---------a~eEm~HA~~l~eRIl~LgG~P~~~~~~~-----~~~--g~~v~eml~~dl~~ 93 (158)
T PRK10635 30 RMFKNWGLMRLNDVEYHE---------SIDEMKHADKYIERILFLEGIPNLQDLGK-----LNI--GEDVEEMLRSDLRL 93 (158)
T ss_pred HHHHcCCcHHHHHHHHHH---------HHHHHHHHHHHHHHHHHcCCCCCCCCCCC-----CCC--CCCHHHHHHHHHHH
Confidence 467889986 33322 23578889999999999999999988632 222 23455555554444
Q ss_pred ccccCCccHHHHHHHhhccccc
Q 002761 821 GYVFGSPLYDEIISLCLDLGEL 842 (883)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~ 842 (883)
-+ -....|.++|.+|-..|..
T Consensus 94 E~-~ai~~y~e~i~~a~~~~D~ 114 (158)
T PRK10635 94 EL-EGAKDLREAIAYADSVHDY 114 (158)
T ss_pred HH-HHHHHHHHHHHHHHHcCCH
Confidence 33 4678999999999875543
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=79.53 E-value=1.2e+02 Score=35.76 Aligned_cols=19 Identities=21% Similarity=0.030 Sum_probs=9.4
Q ss_pred HHHHcCCHHHHHHHHHHch
Q 002761 252 CQATCGIPEVAFATFENME 270 (883)
Q Consensus 252 ~y~k~G~~e~A~~lf~~M~ 270 (883)
.|.-.+++++|...|..+.
T Consensus 314 ~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 314 CHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHchHHHHHHHHHHHH
Confidence 3444455555555555544
No 227
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=79.33 E-value=80 Score=32.48 Aligned_cols=124 Identities=10% Similarity=-0.068 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 002761 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGG---LRATDEIY 211 (883)
Q Consensus 136 ~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~g---i~pd~~ty 211 (883)
.|+...-..|-.++.+.|+..+|...|.+...--+.-|. ..-.+-++....+++-.|...++.+.+.. -.||. -
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 455555556666666666666666666666554344444 44455555555666666666666655432 22332 2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002761 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263 (883)
Q Consensus 212 n~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~ 263 (883)
-.+-..|...|++..|..-|+.....---|-...| --.++++.|+.++|.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHH
Confidence 23445566666666666666666654222222222 223445566555544
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.12 E-value=51 Score=38.67 Aligned_cols=57 Identities=14% Similarity=-0.003 Sum_probs=31.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002761 179 LVEELVRNKYLEDANKVFLRGAKGGLRA-TDEIYDLMIAEDCKAGDHSNALEIAYEME 235 (883)
Q Consensus 179 LI~~y~k~G~~eeA~~lf~~M~~~gi~p-d~~tyn~LI~a~~k~g~~eeA~~lf~~M~ 235 (883)
|-.++-+.|+.++|.+.|++|.+..-.- +......||.++...+.+.++..++.+-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3344445666666666666665432111 12344556666666666666666666654
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=78.50 E-value=66 Score=31.05 Aligned_cols=219 Identities=19% Similarity=0.120 Sum_probs=117.5
Q ss_pred ChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002761 84 DAPRVNDVIYDMIAAGLS-PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA-GVRPLHETLIALARLFGSKGLATKGLEI 161 (883)
Q Consensus 84 ~~~~A~~lf~~M~~~G~~-pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~-Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l 161 (883)
....+...+......... .....+......+...+.+..+...+...... ........+......+...+.+..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444433211 12466666667777777777777776665542 2333445555556666666667777777
Q ss_pred HHHHHHcCCChhHHHHHHHH-HHHHCCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002761 162 LAAMEKINYDIRQAWLILVE-ELVRNKYLEDANKVFLRGAKGGLRA----TDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236 (883)
Q Consensus 162 ~~~m~~~g~~pdvtyn~LI~-~y~k~G~~eeA~~lf~~M~~~gi~p----d~~tyn~LI~a~~k~g~~eeA~~lf~~M~~ 236 (883)
+.........+......... .|...|+++.|...|.+... ..| ....+......+...++.+.|...+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 77666654443222223333 66677777777777777644 222 223333344445566666777766666665
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD-TETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311 (883)
Q Consensus 237 ~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd-~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~ 311 (883)
.........+..+-..|...+..+.|...+..... ..|+ ...+..+...+...+ ...++...+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE----LDPDNAEALYNLALLLLELG---RYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh----hCcccHHHHhhHHHHHHHcC---CHHHHHHHHHHHHH
Confidence 42221345566666666666666666666666552 1222 233333333333444 34455555555544
No 230
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=77.70 E-value=46 Score=37.95 Aligned_cols=263 Identities=17% Similarity=0.096 Sum_probs=154.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH--H--HCCCC-CCHHHHHHH
Q 002761 75 ELMQHARNRDAPRVNDVIYDMIAAGLSPGP----RSFHGLVVAYTLNGDHEGAMHSLKRE--L--SAGVR-PLHETLIAL 145 (883)
Q Consensus 75 ~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~----~tyn~LI~a~~~~g~~~~A~~lf~~M--~--~~Gi~-Pd~~ty~~L 145 (883)
.--.+||.|+......+|+...+.|- -|. ..|..|-.+|.-.+++++|+++...= . ..|-+ -...+...|
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 33458999999999999999998882 333 45677777888888899998865321 0 00100 001111111
Q ss_pred HHHHHhcCCH-----------HHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCC--------------------HHHHHH
Q 002761 146 ARLFGSKGLA-----------TKGLEILAAMEKINYDIRQAWLILVEELVRNKY--------------------LEDANK 194 (883)
Q Consensus 146 I~a~~~~g~~-----------~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~--------------------~eeA~~ 194 (883)
-+.+--.|.+ +-|+++=++..+. ..+-.|-+.|...|+ ++.|.+
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~-----RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLES-----RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhh-----HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 1112222333 3344443333331 234445555554443 233444
Q ss_pred HHHHHH----hCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 002761 195 VFLRGA----KGGLRA-TDEIYDLMIAEDCKAGDHSNALEIAYEME----AAGRM-ATTFHFNHLLSCQATCGIPEVAFA 264 (883)
Q Consensus 195 lf~~M~----~~gi~p-d~~tyn~LI~a~~k~g~~eeA~~lf~~M~----~~G~~-Pd~~tyn~LI~~y~k~G~~e~A~~ 264 (883)
.|.+=. ..|=.. --..|..|-+.|.-.|+++.|...++.-. +.|-+ .-...++.|-++|.-.|.++.|.+
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 444321 111110 11466677777777889999988776432 22321 123567888899999999999998
Q ss_pred HHHHchh-----CCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhc---cCCCCCCHHHHHHHHHHHHHcCCH
Q 002761 265 TFENMEY-----GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED---HKRLQPNVKTYALLVECFTKYCAV 336 (883)
Q Consensus 265 lf~~M~~-----g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~---~~gi~Pd~~Ty~~LI~a~~k~G~~ 336 (883)
.|..-.. |.+ .....++-+|-+.|.-.. ++++|+.++.+-..- -....-....|.+|-.+|...|.-
T Consensus 257 hYK~tl~LAielg~r--~vEAQscYSLgNtytll~---e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNR--TVEAQSCYSLGNTYTLLK---EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HHHHHHHHHHHhcch--hHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 8875331 111 223455667788888777 777888887764320 012233456789999999999999
Q ss_pred HHHHHHHHHHHh
Q 002761 337 TEAIRHFRALQN 348 (883)
Q Consensus 337 eeA~~lf~~M~~ 348 (883)
++|+.+...-.+
T Consensus 332 ~kAl~fae~hl~ 343 (639)
T KOG1130|consen 332 RKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHH
Confidence 999987766553
No 231
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=77.69 E-value=1.3 Score=55.51 Aligned_cols=13 Identities=0% Similarity=-0.273 Sum_probs=7.0
Q ss_pred HHHHHHHHHHcCC
Q 002761 246 FNHLLSCQATCGI 258 (883)
Q Consensus 246 yn~LI~~y~k~G~ 258 (883)
-.++++.+..+.+
T Consensus 287 ~~~v~n~l~~edr 299 (784)
T PF04931_consen 287 MRCVDNQLFSEDR 299 (784)
T ss_pred HHHHHHHhhcccc
Confidence 3455555555554
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.39 E-value=1.1e+02 Score=32.90 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002761 86 PRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129 (883)
Q Consensus 86 ~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~ 129 (883)
+.|--+.++|... +--+..|+-.+..|..+|.++.|-..+++
T Consensus 75 EqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 75 EQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 4444444444431 11123455555666666666555544443
No 233
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.45 E-value=21 Score=38.94 Aligned_cols=77 Identities=13% Similarity=0.009 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 002761 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA-----AGRMATTFHFNHL 249 (883)
Q Consensus 175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~-----~G~~Pd~~tyn~L 249 (883)
++..++..+..+|+.+.+...++++.... +-+...|-.+|.+|.+.|+...|...|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 55666666666666666666666666533 23556666666666666666666666665543 5677776666665
Q ss_pred HHH
Q 002761 250 LSC 252 (883)
Q Consensus 250 I~~ 252 (883)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 234
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=75.50 E-value=1.1 Score=47.04 Aligned_cols=9 Identities=11% Similarity=0.191 Sum_probs=4.2
Q ss_pred ChhHHHHHH
Q 002761 504 SESDYVRVE 512 (883)
Q Consensus 504 ~~~~~~~vi 512 (883)
+...|.-|+
T Consensus 179 rlGq~sCLR 187 (314)
T PF06524_consen 179 RLGQYSCLR 187 (314)
T ss_pred cccchhhhh
Confidence 444455544
No 235
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=74.37 E-value=48 Score=36.32 Aligned_cols=103 Identities=14% Similarity=0.048 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH
Q 002761 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320 (883)
Q Consensus 241 Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~ 320 (883)
-|...|-.|-..|.+.|+.+.|..-|.+-.+ -. .+|...+..+-.++..........++..+|+++.. ..|+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r-L~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~----~D~~~ 226 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALR-LA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA----LDPAN 226 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHH-hC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh----cCCcc
Confidence 3778888899999999999999998887663 11 34555566666665555443356788899999986 66776
Q ss_pred HHHHHHH-HHHHHcCCHHHHHHHHHHHHhCC
Q 002761 321 KTYALLV-ECFTKYCAVTEAIRHFRALQNYE 350 (883)
Q Consensus 321 ~Ty~~LI-~a~~k~G~~eeA~~lf~~M~~~~ 350 (883)
++-.+++ ..+...|++.+|...|+.|.+..
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6665555 48889999999999999998643
No 236
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.98 E-value=2.2e+02 Score=34.86 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=44.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHchhCCCCCCCCHHHHHHHHHHHHHc
Q 002761 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF-ATFENMEYGEDYMKPDTETYNCVIQAYTRA 293 (883)
Q Consensus 215 I~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~-~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~ 293 (883)
...+.-.|+++.|.+.+.. ..+...+.+++...+.-|.-.+-..... .++..-. . .|-..-+..||..|++.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~---~--~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDP---G--DPPPLNFARLIGQYTRS 337 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-----------------------------HHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecC---C--CCCCcCHHHHHHHHHHH
Confidence 3445667888888887766 2334445666666655544322222211 1111111 1 11226688899999996
Q ss_pred CCcccHHHHHHHHHHhHh
Q 002761 294 ESYDRVQDVAELLGMMVE 311 (883)
Q Consensus 294 G~~d~~~eAl~lf~~M~~ 311 (883)
=...+..+|++.|--+..
T Consensus 338 F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 338 FEITDPREALQYLYLICL 355 (613)
T ss_dssp TTTT-HHHHHHHHHGGGG
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 555578889998887754
No 237
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=73.83 E-value=0.86 Score=51.58 Aligned_cols=16 Identities=19% Similarity=-0.012 Sum_probs=9.1
Q ss_pred cccCCCCCCCCCCChH
Q 002761 711 MVEDDDDEDWFPEDPF 726 (883)
Q Consensus 711 ~~~~~~~~~~~~~~~~ 726 (883)
+++--|.-|+..-||.
T Consensus 186 tP~LPDSTDFVCGTLD 201 (458)
T PF10446_consen 186 TPELPDSTDFVCGTLD 201 (458)
T ss_pred CCCCCCcccccCCCcC
Confidence 4555555666665554
No 238
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=73.68 E-value=1.6 Score=54.27 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=7.0
Q ss_pred HHhhhccccCc
Q 002761 847 AIVADMETTGI 857 (883)
Q Consensus 847 ~~~~~~~~~~~ 857 (883)
+-.|-.|++|-
T Consensus 1949 ~a~AAgeasga 1959 (3015)
T KOG0943|consen 1949 AAAAAGEASGA 1959 (3015)
T ss_pred HHHHhhcccCC
Confidence 34456777776
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=73.02 E-value=92 Score=30.01 Aligned_cols=222 Identities=18% Similarity=0.104 Sum_probs=156.6
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCChhHHHHHHHHHHHHCCCHHHHH
Q 002761 117 NGDHEGAMHSLKRELSAGVR-PLHETLIALARLFGSKGLATKGLEILAAMEKI--NYDIRQAWLILVEELVRNKYLEDAN 193 (883)
Q Consensus 117 ~g~~~~A~~lf~~M~~~Gi~-Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~--g~~pdvtyn~LI~~y~k~G~~eeA~ 193 (883)
.+....+...+......... .....+......+...+.+..+...+...... .......+..+...+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666666554322 13677888888999999999999998888763 2222237778888888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 194 KVFLRGAKGGLRATDEIYDLMIA-EDCKAGDHSNALEIAYEMEAAGR--MATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 194 ~lf~~M~~~gi~pd~~tyn~LI~-a~~k~g~~eeA~~lf~~M~~~G~--~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
..+.........+ ......... .+...|+++.|...|........ ......+......+...++.+.|...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988744333 122333333 78999999999999999855221 1234455555556788999999999999887
Q ss_pred hCCCCCCC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002761 271 YGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VKTYALLVECFTKYCAVTEAIRHFRALQN 348 (883)
Q Consensus 271 ~g~~gi~p-d~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~ 348 (883)
. .... ....+..+-..+...+ ....+...+..... ..|+ ...+..+...+...+..+.+...+.....
T Consensus 195 ~---~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 K---LNPDDDAEALLNLGLLYLKLG---KYEEALEYYEKALE----LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred h---hCcccchHHHHHhhHHHHHcc---cHHHHHHHHHHHHh----hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 1122 4677888888888888 56699999998876 4454 44444444455577789999988888775
Q ss_pred C
Q 002761 349 Y 349 (883)
Q Consensus 349 ~ 349 (883)
.
T Consensus 265 ~ 265 (291)
T COG0457 265 L 265 (291)
T ss_pred h
Confidence 3
No 240
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=72.83 E-value=1.1e+02 Score=30.85 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 002761 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308 (883)
Q Consensus 229 ~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~ 308 (883)
+.++.+.+.|+.|+...|..+|+.+.+.|++..-..++. .++-+|...-...+-.+..... .-.+-|++.+.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq------~~Vi~DSk~lA~~LLs~~~~~~-~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ------YHVIPDSKPLACQLLSLGNQYP-PAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh------hcccCCcHHHHHHHHHhHccCh-HHHHHHHHHHHH
Confidence 344445555666666666666666666665544444332 2224444444433332222210 011222333332
Q ss_pred hHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346 (883)
Q Consensus 309 M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M 346 (883)
+.. .+..++..+...|++-+|.++.+..
T Consensus 88 L~~----------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LGT----------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhh----------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 221 2344555555666666666665554
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=72.44 E-value=2.1e+02 Score=33.84 Aligned_cols=180 Identities=16% Similarity=0.103 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHc----CChHH
Q 002761 157 KGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG-GLRAT-----DEIYDLMIAEDCKA----GDHSN 226 (883)
Q Consensus 157 ~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~-gi~pd-----~~tyn~LI~a~~k~----g~~ee 226 (883)
.+.-+|.-+... ++| ....+++..+=.|+-+.+++++.+-.+. ++.-. ...|+.++..++.. ...+.
T Consensus 175 ~G~G~f~L~lSl-LPp--~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPP--KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHHh-CCH--HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 344455555543 222 3456677777789999999988876553 33221 14677777777654 46788
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHchhCCCCC--CCCHHHHHHHHHHHHHcCCcccHHHHH
Q 002761 227 ALEIAYEMEAAGRMATTFHFNHLL-SCQATCGIPEVAFATFENMEYGEDYM--KPDTETYNCVIQAYTRAESYDRVQDVA 303 (883)
Q Consensus 227 A~~lf~~M~~~G~~Pd~~tyn~LI-~~y~k~G~~e~A~~lf~~M~~g~~gi--~pd~~tyn~LI~ay~~~G~~d~~~eAl 303 (883)
|.+++..+.++ -|+...|.-.- ..+...|++++|.+.|+.....+... -+....|. +.-.+.-.+ ++++|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E-l~w~~~~~~---~w~~A~ 325 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFE-LAWCHMFQH---DWEEAA 325 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHH-HHHHHHHHc---hHHHHH
Confidence 99999999886 57777765443 45677899999999999654100000 12223333 334455566 677999
Q ss_pred HHHHHhHhccCCCCCCHHHHHHHHH-HHHHcCCH-------HHHHHHHHHHHh
Q 002761 304 ELLGMMVEDHKRLQPNVKTYALLVE-CFTKYCAV-------TEAIRHFRALQN 348 (883)
Q Consensus 304 ~lf~~M~~~~~gi~Pd~~Ty~~LI~-a~~k~G~~-------eeA~~lf~~M~~ 348 (883)
+.|..+.++ -.....+|.-+.. ++...|+. ++|..+|.+...
T Consensus 326 ~~f~~L~~~---s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKE---SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhc---cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999874 2334555544443 44456777 788888877753
No 242
>PRK15331 chaperone protein SicA; Provisional
Probab=72.09 E-value=40 Score=33.84 Aligned_cols=86 Identities=8% Similarity=-0.055 Sum_probs=40.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002761 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159 (883)
Q Consensus 80 ~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~ 159 (883)
-..|++++|..+|.-+...+ .-|..-|..|-.+|-..+++++|+.+|...-..+. -|...+-..-.++...|+...|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 34555555555555555433 12333344444444445555555555544333221 12222333344445555555555
Q ss_pred HHHHHHHH
Q 002761 160 EILAAMEK 167 (883)
Q Consensus 160 ~l~~~m~~ 167 (883)
..|...+.
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555444
No 243
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=71.83 E-value=5.2 Score=47.09 Aligned_cols=113 Identities=20% Similarity=0.285 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCcchhhchhHHHHHHHhhhhccccchHHHHh---hhccccccCCCCcccchhhccc
Q 002761 557 VLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKR---RFLGEGLNGRHDKAVEMDESEL 633 (883)
Q Consensus 557 ~l~~~l~~~~~~~~~~G~~lyvp~~~~~~~~vdee~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 633 (883)
+=++.|.++...+....++.|+..+.- . |...+. .+......|-.. .|++.| ..+++ |..+.++
T Consensus 872 vpvesld~lKewLds~di~f~e~~~nl---n----W~timk--si~~DPi~FfedGgW~fL~~g---sddE~-deseeEv 938 (1001)
T COG5406 872 VPVESLDKLKEWLDSNDILFMETSANL---N----WNTIMK--SIMKDPISFFEDGGWSFLMVG---SDDES-DESEEEV 938 (1001)
T ss_pred ccHHHHHHHHHHhhhcCceeEeccccc---c----HHHHHH--HHhcCcHHHhhcCcceeeecC---Ccccc-cccchhh
Confidence 335667777777777775555544321 1 223332 123355555443 233332 22333 5555666
Q ss_pred cccc--ccc--hhhhhhhhcchhhhhHHHhhh-----cCCCcchhhHHHHHHhhhcCc
Q 002761 634 SDVL--DDD--VTDVEYVAKDEEADEEEEVEQ-----AEPESQDVDRVKEKLVEAKKP 682 (883)
Q Consensus 634 ~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 682 (883)
+|.+ +|| +|.+|+|..++-|||-+|+|. ++.+++|-+....|++-+.+|
T Consensus 939 SEyeaS~dd~sdet~edees~e~seD~sedeSe~~~~DeE~gEDwdele~kaa~~~rp 996 (1001)
T COG5406 939 SEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRP 996 (1001)
T ss_pred hhhhccCCCccccccccccccccccccccccccccccccccccchhhHhhhhhhhccC
Confidence 6655 222 444444444444444433322 245566776666666444333
No 244
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=71.22 E-value=50 Score=36.14 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHccCChHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002761 54 LSTNGSVVSAAEQGLRLIFMEEL-MQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS 132 (883)
Q Consensus 54 ~~ty~~ll~a~~~~~~~~~~~~L-~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~ 132 (883)
-..|-..++.+-+...+.....+ -.+..+|+.+.+...++++.... +-+...|-.||.+|.++|+...|+..|+++..
T Consensus 137 f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 137 FDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34444444444443322222222 24666777777777777777654 34667777777777777777777777776653
Q ss_pred -----CCCCCCHHHHHHHHHH
Q 002761 133 -----AGVRPLHETLIALARL 148 (883)
Q Consensus 133 -----~Gi~Pd~~ty~~LI~a 148 (883)
.|+.|-..+.......
T Consensus 216 ~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 216 TLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HhhhhcCCCccHHHHHHHHHH
Confidence 4666666665555554
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.12 E-value=61 Score=35.07 Aligned_cols=96 Identities=18% Similarity=0.086 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH---HHHHHHHHHHHCCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHH
Q 002761 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLEDANKVFLRGAKGGL-RAT-DEIYDLMI 215 (883)
Q Consensus 141 ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv---tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi-~pd-~~tyn~LI 215 (883)
.|+.-+..+ +.|++..|...|...++....... .+-.|-..+...|++++|..+|..+.+.-- .|- ..++--|-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466666554 455677777777777665432221 445666777777777777777776665311 111 13444455
Q ss_pred HHHHHcCChHHHHHHHHHHHHc
Q 002761 216 AEDCKAGDHSNALEIAYEMEAA 237 (883)
Q Consensus 216 ~a~~k~g~~eeA~~lf~~M~~~ 237 (883)
....+.|+.++|...|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5556666666666666666554
No 246
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.10 E-value=30 Score=39.72 Aligned_cols=209 Identities=11% Similarity=-0.051 Sum_probs=113.3
Q ss_pred HHHHHhCCChhhHHHHHHcCCCCChhH--HHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--
Q 002761 30 MSSPEKKTRRKKQQRRQQKHGDSLLST--NGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPR-- 105 (883)
Q Consensus 30 I~~~~k~g~~~~A~~M~~~gv~Pd~~t--y~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~-- 105 (883)
+...++.|..+-+..+++.|..|+... ..+.++.++ +.|+.+- .+.+.+.|..|+..
T Consensus 6 L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~---------------~~~~~~~----v~~Ll~~ga~~~~~~~ 66 (413)
T PHA02875 6 LCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAM---------------KFRDSEA----IKLLMKHGAIPDVKYP 66 (413)
T ss_pred HHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH---------------HcCCHHH----HHHHHhCCCCccccCC
Confidence 445566788888889999999887643 122233333 3344432 23333445444432
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH---HHHHH
Q 002761 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET---LIALARLFGSKGLATKGLEILAAMEKINYDIRQ---AWLIL 179 (883)
Q Consensus 106 tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~t---y~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv---tyn~L 179 (883)
...+.+...+..|+.+.+..+++ .|...+... -.+.+...+..|+. ++++.+.+.|..++. .-.+.
T Consensus 67 ~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tp 138 (413)
T PHA02875 67 DIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSP 138 (413)
T ss_pred CcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCH
Confidence 12234566677888876655553 343222111 12344445566665 455566677877654 12345
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHH
Q 002761 180 VEELVRNKYLEDANKVFLRGAKGGLRATD---EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF---NHLLSCQ 253 (883)
Q Consensus 180 I~~y~k~G~~eeA~~lf~~M~~~gi~pd~---~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~ty---n~LI~~y 253 (883)
+...+..|+.+-+..+++ .|..++. .-+ +.+...+..|..+ +.+.+.+.|..|+.... ++++...
T Consensus 139 Lh~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~-TpL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A 209 (413)
T PHA02875 139 LHLAVMMGDIKGIELLID----HKACLDIEDCCGC-TPLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYA 209 (413)
T ss_pred HHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHH
Confidence 666677888766555543 3443332 222 3334445556654 45556677877765432 3566656
Q ss_pred HHcCCHHHHHHHHHHchhCCCCCCCCH
Q 002761 254 ATCGIPEVAFATFENMEYGEDYMKPDT 280 (883)
Q Consensus 254 ~k~G~~e~A~~lf~~M~~g~~gi~pd~ 280 (883)
++.|+.+-+.-+++ .|..++.
T Consensus 210 ~~~~~~~iv~~Ll~------~gad~n~ 230 (413)
T PHA02875 210 IENNKIDIVRLFIK------RGADCNI 230 (413)
T ss_pred HHcCCHHHHHHHHH------CCcCcch
Confidence 67787765555443 4445554
No 247
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.56 E-value=38 Score=37.35 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 002761 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237 (883)
Q Consensus 188 ~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~ 237 (883)
+.++++.++..=.+-|+-||..+++.+|+.+.+.+++.+|..+...|...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34455555555555666677777777777777777776666666555543
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.59 E-value=61 Score=36.96 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-
Q 002761 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC- 219 (883)
Q Consensus 141 ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~- 219 (883)
+++.|.-+|.+.+.+..|.+.-...+..+...--..--=-.+|...|+++.|+..|+++++ +.|+...-+.=|..|.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH
Confidence 4455555666666666666666666555422211222233455666666666666666665 4455544443333333
Q ss_pred HcCCh-HHHHHHHHHHHH
Q 002761 220 KAGDH-SNALEIAYEMEA 236 (883)
Q Consensus 220 k~g~~-eeA~~lf~~M~~ 236 (883)
+.... +...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 23332 333556666653
No 249
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.98 E-value=1.2e+02 Score=29.47 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=65.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002761 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE 160 (883)
Q Consensus 81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~ 160 (883)
-.|.+++..++..+... +.+..-||-+|.-....-+-+-.+++++.. |---|.. .+|++.....
T Consensus 14 ldG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis----------~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDIS----------KCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GG----------G-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHH---hhhcCch----------hhcchHHHHH
Confidence 34666666666666654 234455555555554444444444444332 2111111 1222222222
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 002761 161 ILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240 (883)
Q Consensus 161 l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~ 240 (883)
.+..+ |. .+.-.+.-++.+.+.|+-+.-.+++.++.+ +-.++....-.+-.||.+.|+..++.+++++..++|++
T Consensus 78 C~~~~---n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKR---NK-LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHT---T----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHh---cc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 22111 11 001334556666777777777777777654 22456666666777777777777777777777776653
No 250
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=67.66 E-value=1.6e+02 Score=30.49 Aligned_cols=129 Identities=13% Similarity=0.053 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh-CCCCCCCCHHHH
Q 002761 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY-GEDYMKPDTETY 283 (883)
Q Consensus 205 ~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~-g~~gi~pd~~ty 283 (883)
-|++..--.|-.++...|++.+|...|.+-...-+.-|....-.+-++....++...|...++.+-+ .-.+-.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 3566555566677777777777777777766554455666666666666667777777777766552 111223332 2
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002761 284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRH 342 (883)
Q Consensus 284 n~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~l 342 (883)
-.+-..|.-.|.+. +|..-|+.... .-|+...-.-.-..+.+.|+.++|..-
T Consensus 164 Ll~aR~laa~g~~a---~Aesafe~a~~----~ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYA---DAESAFEVAIS----YYPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCch---hHHHHHHHHHH----hCCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 33455666677433 55555555554 345443333333345566666655543
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=67.36 E-value=1.2e+02 Score=29.58 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=48.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHH---HHHHHHHHhc
Q 002761 77 MQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA-GVRPLHETL---IALARLFGSK 152 (883)
Q Consensus 77 ~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~-Gi~Pd~~ty---~~LI~a~~~~ 152 (883)
.+.+..|+++.|++.|.+....- +-+...||.--.++--.|+.++|++=+++..+. |-+ ....+ .---..|-..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 34666677777777776665432 235566666666666666766666666555443 211 11111 1111223344
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 002761 153 GLATKGLEILAAMEKINY 170 (883)
Q Consensus 153 g~~~~A~~l~~~m~~~g~ 170 (883)
|+.+.|+.=|....+.|-
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 555555555555555543
No 252
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=66.93 E-value=72 Score=32.39 Aligned_cols=57 Identities=12% Similarity=0.041 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH---HHHHHHHHHHHCCCHHHHHHHHHH
Q 002761 142 LIALARLFGSKGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLEDANKVFLR 198 (883)
Q Consensus 142 y~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv---tyn~LI~~y~k~G~~eeA~~lf~~ 198 (883)
+..+...|++.|+.+.|.+.|.++......+.. .+-.+|....-.+++..+.....+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344444445555555555555554444333331 333444444444454444444433
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.34 E-value=1.6e+02 Score=36.76 Aligned_cols=177 Identities=12% Similarity=0.042 Sum_probs=115.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002761 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAY----TLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147 (883)
Q Consensus 72 ~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~----~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~ 147 (883)
....|-.+++...+..|..+-..- + .+..+-..+...| -+.|++++|...|-+-... +.| ..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 334445566666666666655432 2 3334444444444 4679999999888664432 333 24566
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 002761 148 LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227 (883)
Q Consensus 148 a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA 227 (883)
-|.....+..-...++.+.+.|+.....-+.|+.+|.+.++.+.-.++.+... .|.. ..-..+.+..|-+.+-.++|
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66666677777788888999998766667899999999999998888777654 3322 11244667777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 228 ~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
..+-..... +....+.++ -..|++++|.+.+..|.
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 766554332 333444443 45688999999999887
No 254
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=64.86 E-value=1.4e+02 Score=29.06 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 209 ~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
.-.+..++.+.+.|+-+.-.+++.++.+ +-+++....-.+-.+|.+.|+..+|.+++.+.-
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3445566777778888887788877765 335666677777888888888888888877766
No 255
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=64.80 E-value=4.3e+02 Score=34.52 Aligned_cols=116 Identities=13% Similarity=0.063 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC
Q 002761 240 MATTFHFNHLLSCQA----TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315 (883)
Q Consensus 240 ~Pd~~tyn~LI~~y~----k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~g 315 (883)
.|+...+.....+|+ ..+++++|.-.|+..-+ -.--+.+|-.+| ++.+|+.+..+|.. +
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----------lekAl~a~~~~~---dWr~~l~~a~ql~~---~ 994 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----------LEKALKAYKECG---DWREALSLAAQLSE---G 994 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----------HHHHHHHHHHhc---cHHHHHHHHHhhcC---C
Confidence 355555555554443 44666666666654431 012356677777 77788888777743 1
Q ss_pred CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002761 316 LQPNVK--TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390 (883)
Q Consensus 316 i~Pd~~--Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~ 390 (883)
-|.. +--.|++-+...++.-+|-++..+.... +.-.+..||++..+++|+++-..-.
T Consensus 995 --~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----------------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 995 --KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----------------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred --HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----------------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 2322 2356777777888888888777666431 3456788888888999888776654
No 256
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.31 E-value=8.7 Score=42.93 Aligned_cols=40 Identities=25% Similarity=0.119 Sum_probs=22.2
Q ss_pred HHhhhhccccchHHHHhhhccccccCCCCcccchhhcccccccccc
Q 002761 595 LISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDD 640 (883)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (883)
+.-+++...+.|.|-.+|-. +.+-+.+...++..++.|||
T Consensus 240 ~~~~l~~~~~~tp~s~~r~~------~~n~sv~~~ss~~edD~Ddd 279 (514)
T KOG3130|consen 240 HTPCLKDVASSTPFSGQRNS------QLNCSVNGSSSYHEDDDDDD 279 (514)
T ss_pred cchHhhcCCCcCcchhhhhh------cccccccCCCCccccccccc
Confidence 44556666788888888843 33334444444444444444
No 257
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.33 E-value=1.6e+02 Score=29.04 Aligned_cols=115 Identities=10% Similarity=0.015 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHhCCChhhHHHHHHcCCCCChhH--HHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002761 20 QTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLST--NGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIA 97 (883)
Q Consensus 20 ~pd~~syn~LI~~~~k~g~~~~A~~M~~~gv~Pd~~t--y~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~ 97 (883)
.++.-+|...|..... .|.+.+..++..+ .|.+++-......+.+.-.++... ..+......
T Consensus 11 ~~nL~~w~~fi~~~~~--------y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l--------~~l~~~~~~ 74 (145)
T PF13762_consen 11 LANLEVWKTFINSHLP--------YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHL--------HFLNTDNII 74 (145)
T ss_pred hhhHHHHHHHHHHHHH--------HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHH--------HHhhHHHHh
Confidence 5677778777765533 2344455555433 677777766665554433333222 111111111
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002761 98 AGLSPGPRSFHGLVVAYTLNGD-HEGAMHSLKRELSAGVRPLHETLIALARLFGSK 152 (883)
Q Consensus 98 ~G~~pd~~tyn~LI~a~~~~g~-~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~ 152 (883)
| ..+..+|++++.+.++... --.+..+|+-|++.+.+++..-|..+|.+|.+.
T Consensus 75 -~-~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 75 -G-WLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred -h-hcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 1 2455789999999977776 456888999999988999999999999998765
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=63.27 E-value=15 Score=27.84 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcc
Q 002761 364 DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 400 (883)
Q Consensus 364 dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~ 400 (883)
++|..+-..|.+.|++++|.++|++..+.. |.+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~---P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD---PDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCCH
Confidence 367889999999999999999999999875 5554
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=63.03 E-value=14 Score=26.73 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002761 365 PLSLYLRALCREGRIIELLEALEAMA 390 (883)
Q Consensus 365 tYn~LI~~y~~~G~~~eA~~lf~~M~ 390 (883)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999954
No 260
>PRK15331 chaperone protein SicA; Provisional
Probab=62.99 E-value=55 Score=32.87 Aligned_cols=86 Identities=10% Similarity=-0.047 Sum_probs=47.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHH
Q 002761 115 TLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANK 194 (883)
Q Consensus 115 ~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~ 194 (883)
-..|++++|..+|+-+...+.. |..-+..|-.+|-..+.++.|...|......+......+-.+-.+|...|+.+.|..
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 3567777777777766554322 222233444444445677777777766555443211222234456666677777777
Q ss_pred HHHHHHh
Q 002761 195 VFLRGAK 201 (883)
Q Consensus 195 lf~~M~~ 201 (883)
.|.....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7666554
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.67 E-value=93 Score=33.67 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchh--CCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCC-HH
Q 002761 245 HFNHLLSCQATCGIPEVAFATFENMEY--GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN-VK 321 (883)
Q Consensus 245 tyn~LI~~y~k~G~~e~A~~lf~~M~~--g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-~~ 321 (883)
.|+.-+.. .+.|++..|...|....+ -.....||..-| |-..+...|++ .+|-..|..+.++ .+-.|- .-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y---~~Aa~~f~~~~k~-~P~s~KApd 216 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDY---EDAAYIFARVVKD-YPKSPKAPD 216 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccc---hHHHHHHHHHHHh-CCCCCCChH
Confidence 56666554 456668888888877663 122334555544 78888888844 4888888888764 222222 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 002761 322 TYALLVECFTKYCAVTEAIRHFRALQNYEG 351 (883)
Q Consensus 322 Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~ 351 (883)
++--|-.+..+.|+.++|..+|+.+.+...
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 455566677888999999999988886543
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=59.77 E-value=3.6e+02 Score=31.97 Aligned_cols=61 Identities=8% Similarity=0.133 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002761 284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348 (883)
Q Consensus 284 n~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~ 348 (883)
-.+-..+-+.| +.++|++.|++|.++ ....-+......||.++...+.+.++..++.+--+
T Consensus 263 rRLAmCarklG---r~~EAIk~~rdLlke-~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLG---RLREAIKMFRDLLKE-FPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhC---ChHHHHHHHHHHHhh-CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555555667 666888888888763 11111234556778888888888888888877643
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=59.57 E-value=69 Score=31.40 Aligned_cols=51 Identities=22% Similarity=0.103 Sum_probs=23.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCChh---HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002761 151 SKGLATKGLEILAAMEKINYDIR---QAWLILVEELVRNKYLEDANKVFLRGAK 201 (883)
Q Consensus 151 ~~g~~~~A~~l~~~m~~~g~~pd---vtyn~LI~~y~k~G~~eeA~~lf~~M~~ 201 (883)
+.|++..|.+.|+.+..+-.... .+.-.|+.+|.+.|++++|...+++..+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555554444321111 1333444555555555555555555544
No 264
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=59.27 E-value=1.7e+02 Score=29.24 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=8.0
Q ss_pred HHCCCHHHHHHHHHHHH
Q 002761 184 VRNKYLEDANKVFLRGA 200 (883)
Q Consensus 184 ~k~G~~eeA~~lf~~M~ 200 (883)
.+.|++.+|.++|+++.
T Consensus 55 i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELE 71 (160)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 34444444444444443
No 265
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=59.00 E-value=1.9e+02 Score=35.50 Aligned_cols=42 Identities=5% Similarity=-0.085 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCChhhHHHHH---HcCCCCChhHHHHHHHHHHcc
Q 002761 26 IRSAMSSPEKKTRRKKQQRRQ---QKHGDSLLSTNGSVVSAAEQG 67 (883)
Q Consensus 26 yn~LI~~~~k~g~~~~A~~M~---~~gv~Pd~~ty~~ll~a~~~~ 67 (883)
--++|=-|.+.|++++|.+.. +.+.......|...+..+...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 346788888999999997666 345666666777777777553
No 266
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.69 E-value=2.8e+02 Score=30.47 Aligned_cols=144 Identities=10% Similarity=0.012 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHc-CCChhH-HHHHHHH
Q 002761 107 FHGLVVAYTLNGDHEGAMHSLKRELS-AGVRPLHETLIALARLFGS-KG-LATKGLEILAAMEKI-NYDIRQ-AWLILVE 181 (883)
Q Consensus 107 yn~LI~a~~~~g~~~~A~~lf~~M~~-~Gi~Pd~~ty~~LI~a~~~-~g-~~~~A~~l~~~m~~~-g~~pdv-tyn~LI~ 181 (883)
|..|+. ++..+.+|+.+|+.... ..+--|..+...|++.... .+ ....-.++.+.+... +-.++. +...+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 544443 33445566666653211 2244466666666665554 22 222223333333322 223333 5666677
Q ss_pred HHHHCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHH
Q 002761 182 ELVRNKYLEDANKVFLRGAKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAYE-----MEAAGRMATTFHFNHLLSCQ 253 (883)
Q Consensus 182 ~y~k~G~~eeA~~lf~~M~~~-gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~-----M~~~G~~Pd~~tyn~LI~~y 253 (883)
.+++.+++..-.+++...... +..-|...|..+|......|+..-...+..+ +.+.|+..+...-.+|-..+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 777777777777777665543 3445556777777777777776655555543 22344554444444443333
No 267
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.55 E-value=5.8 Score=39.41 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=10.7
Q ss_pred hHHHHhhhccccccCCCCcc
Q 002761 606 TEFWKRRFLGEGLNGRHDKA 625 (883)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~ 625 (883)
.|+.+|.|++++.-+.-.+.
T Consensus 129 ser~RRt~lR~m~k~~k~~k 148 (227)
T KOG3241|consen 129 SERDRRTLLRAMNKDNKPNK 148 (227)
T ss_pred hHHHHHHHHHHHhcccCccc
Confidence 45666666666544443333
No 268
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=57.59 E-value=2.9e+02 Score=30.21 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002761 189 LEDANKVFLRGAKGGL----RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264 (883)
Q Consensus 189 ~eeA~~lf~~M~~~gi----~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~ 264 (883)
...|.+.|......+. ..+...-.+++....+.|..+.-..+++..... ++...-+.++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4456666666665311 233344445555555666554444444444432 245556666777666666666666
Q ss_pred HHHHch
Q 002761 265 TFENME 270 (883)
Q Consensus 265 lf~~M~ 270 (883)
+++...
T Consensus 223 ~l~~~l 228 (324)
T PF11838_consen 223 LLDLLL 228 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666666
No 269
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=56.77 E-value=3.5e+02 Score=30.96 Aligned_cols=32 Identities=16% Similarity=-0.000 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002761 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349 (883)
Q Consensus 318 Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~ 349 (883)
.|---+.+++.++.-.|++++|.+..+.|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34455678899999999999999999999865
No 270
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.60 E-value=3.3e+02 Score=30.61 Aligned_cols=151 Identities=13% Similarity=-0.001 Sum_probs=99.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCChhH-HHHHHHHHHHHCCCHHH
Q 002761 116 LNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI---NYDIRQ-AWLILVEELVRNKYLED 191 (883)
Q Consensus 116 ~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~---g~~pdv-tyn~LI~~y~k~G~~ee 191 (883)
.+|++.+|-..++++... .+.|...+...=.+|.-.|+...-+..++.+.-. +++..+ +...+--++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 367778888888887764 5668888888889999999998888888887654 222112 22333445667999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002761 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT---TFHFNHLLSCQATCGIPEVAFATFEN 268 (883)
Q Consensus 192 A~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd---~~tyn~LI~~y~k~G~~e~A~~lf~~ 268 (883)
|.+.-++-.+-+ +-|.-+-.++...+--+|++.++.++..+-...--... ..-|=..--.|...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999888876633 23445556677777788899999887665432211101 11111122234556899999999974
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=56.52 E-value=2.9e+02 Score=29.85 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=37.1
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002761 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT---YALLVECFTKYCAVTEAIRHFRALQN 348 (883)
Q Consensus 286 LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~T---y~~LI~a~~k~G~~eeA~~lf~~M~~ 348 (883)
+-.-|.+.| ...-|..-|++|++ ...-...+ +-.+..+|-+.|..++|...-.-+..
T Consensus 173 IaryY~kr~---~~~AA~nR~~~v~e---~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRG---AYVAAINRFEEVLE---NYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhc---ChHHHHHHHHHHHh---ccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445577777 55577778888877 23223333 34456688888888888887766654
No 272
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.40 E-value=87 Score=34.67 Aligned_cols=100 Identities=12% Similarity=-0.004 Sum_probs=70.6
Q ss_pred CCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 002761 169 NYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKG---GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTF 244 (883)
Q Consensus 169 g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~---gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~ 244 (883)
|..... +...++..-....+++++...+-++... -..|+. +-.+.+.-|. .-+++++..++..=.+-|+-||-+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 433333 6667777767777888888888777542 111222 1122233333 346779999998889999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 245 HFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 245 tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
+++.||+.+.+.+++.+|.++...|.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999999999888877665
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=56.22 E-value=4.7e+02 Score=32.22 Aligned_cols=56 Identities=11% Similarity=0.008 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 206 pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
-|....-.|...+.+.|..++|.+.|-+- +. | -+-+..|....++.+|.++-+...
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455666777788888888777666432 11 1 234566667777777777776665
No 274
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=56.18 E-value=2e+02 Score=27.99 Aligned_cols=90 Identities=18% Similarity=0.096 Sum_probs=41.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH-H---HHHHHHHHHHCCC
Q 002761 113 AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-A---WLILVEELVRNKY 188 (883)
Q Consensus 113 a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-t---yn~LI~~y~k~G~ 188 (883)
+++..|+.+.|++.|.+.... ++-+...||.-..++--.|+.++|+.=+.+..+..-.-+. . |.---..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344555555565555554432 2224455555555555555555555555554443211111 1 1111223444555
Q ss_pred HHHHHHHHHHHHhCC
Q 002761 189 LEDANKVFLRGAKGG 203 (883)
Q Consensus 189 ~eeA~~lf~~M~~~g 203 (883)
-+.|..=|....+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555444433
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=55.46 E-value=25 Score=25.42 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761 106 SFHGLVVAYTLNGDHEGAMHSLKRE 130 (883)
Q Consensus 106 tyn~LI~a~~~~g~~~~A~~lf~~M 130 (883)
+|+.|-..|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555666666666666666666653
No 276
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=54.47 E-value=1.9e+02 Score=33.12 Aligned_cols=121 Identities=10% Similarity=-0.100 Sum_probs=73.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc-----CCChh---------H-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 002761 147 RLFGSKGLATKGLEILAAMEKI-----NYDIR---------Q-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211 (883)
Q Consensus 147 ~a~~~~g~~~~A~~l~~~m~~~-----g~~pd---------v-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~ty 211 (883)
+.|.+.|++..|..-|++.+.. +.++. + +++.|..+|.+.+++..|+..-+.....+ ++|+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3456667777777666664431 11111 3 67778888888888888888777776643 2444555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCH-HHHHHHHHHch
Q 002761 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA-TCGIP-EVAFATFENME 270 (883)
Q Consensus 212 n~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~-k~G~~-e~A~~lf~~M~ 270 (883)
--=-.+|...|+++.|+..|+.+++. .|+-..-+.=|..|. +.... +...++|..|-
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55556777778888888888888774 455444444333333 33333 33355666665
No 277
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.21 E-value=3.5e+02 Score=29.87 Aligned_cols=51 Identities=16% Similarity=0.076 Sum_probs=24.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M 130 (883)
....|++..|..+|+...... .-+...--.|..+|...|+.+.|..++..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 444555555555555554432 112233334455555555555555555544
No 278
>PRK11906 transcriptional regulator; Provisional
Probab=52.61 E-value=4.5e+02 Score=30.90 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002761 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198 (883)
Q Consensus 138 d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~ 198 (883)
|......+-.+..-.++++.|..+|++....+...-.+|...--...-+|+.++|.+.+++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3334333333334444444555555444443221111222222223334444444444444
No 279
>PHA03100 ankyrin repeat protein; Provisional
Probab=52.48 E-value=1.8e+02 Score=33.94 Aligned_cols=214 Identities=11% Similarity=0.021 Sum_probs=102.4
Q ss_pred HHHHHHHhCCChhhHHHHHHcCCCCChhHHH--HHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 002761 28 SAMSSPEKKTRRKKQQRRQQKHGDSLLSTNG--SVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPR 105 (883)
Q Consensus 28 ~LI~~~~k~g~~~~A~~M~~~gv~Pd~~ty~--~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~ 105 (883)
+.+...++.|..+-...+++.|..|+..... +.+...... ..+..|+.+ +.+.+.+.|..++..
T Consensus 37 t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~----------~a~~~~~~~----iv~~Ll~~ga~i~~~ 102 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNI----------KYNLTDVKE----IVKLLLEYGANVNAP 102 (480)
T ss_pred hhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHH----------HHHhhchHH----HHHHHHHCCCCCCCC
Confidence 4455667778888888888889888764321 222220000 022223333 333344455443322
Q ss_pred ---HHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH---HH
Q 002761 106 ---SFHGLVVAYT-LNGDHEGAMHSLKRELSAGVRPLHET--LIALARLFGSKGLATKGLEILAAMEKINYDIRQ---AW 176 (883)
Q Consensus 106 ---tyn~LI~a~~-~~g~~~~A~~lf~~M~~~Gi~Pd~~t--y~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv---ty 176 (883)
-.+.|..+.. +.|+.+- ++.+...|..++... -.+.+..+++.|. .-.++.+.+.+.|..++. .-
T Consensus 103 d~~g~tpL~~A~~~~~~~~~i----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g 176 (480)
T PHA03100 103 DNNGITPLLYAISKKSNSYSI----VEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYG 176 (480)
T ss_pred CCCCCchhhHHHhcccChHHH----HHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCC
Confidence 2333333332 5555543 334445666554332 1244555555562 113445556667766553 12
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHH--------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--H
Q 002761 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDE--------IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH--F 246 (883)
Q Consensus 177 n~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~--------tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~t--y 246 (883)
.+-+...++.|+.+-+.-++ +.|..++.. .+.+.+...+..|. ...++.+.+.+.|..++... .
T Consensus 177 ~tpL~~A~~~~~~~iv~~Ll----~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g 250 (480)
T PHA03100 177 YTPLHIAVEKGNIDVIKFLL----DNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYG 250 (480)
T ss_pred CCHHHHHHHhCCHHHHHHHH----HcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCC
Confidence 34556667777655444444 344444321 22444445555555 11234455556666544321 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 002761 247 NHLLSCQATCGIPEVAFATFE 267 (883)
Q Consensus 247 n~LI~~y~k~G~~e~A~~lf~ 267 (883)
.+-+...+..|+.+-+..+++
T Consensus 251 ~TpL~~A~~~~~~~iv~~Ll~ 271 (480)
T PHA03100 251 FTPLHYAVYNNNPEFVKYLLD 271 (480)
T ss_pred CCHHHHHHHcCCHHHHHHHHH
Confidence 233444556677665554443
No 280
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.23 E-value=87 Score=37.54 Aligned_cols=149 Identities=17% Similarity=0.044 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002761 186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265 (883)
Q Consensus 186 ~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~l 265 (883)
.|+++.|..++-... ...-+.++.-+-+.|..++|+++-. .||.. .....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~-------D~d~r-----Felal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELST-------DPDQR-----FELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCC-------Chhhh-----hhhhhhcCcHHHHHHH
Confidence 456666655443332 2345566667777787777776532 12211 2334577888888888
Q ss_pred HHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002761 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA 345 (883)
Q Consensus 266 f~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~ 345 (883)
..+.. +..-|..|-.+..+.|++. .|.+.|..... |.+|+-.+...|+-+.-..+-..
T Consensus 660 a~e~~--------s~~Kw~~Lg~~al~~~~l~---lA~EC~~~a~d-----------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 660 AVEAN--------SEVKWRQLGDAALSAGELP---LASECFLRARD-----------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred HHhhc--------chHHHHHHHHHHhhcccch---hHHHHHHhhcc-----------hhhhhhhhhhcCChhHHHHHHHH
Confidence 77665 6778888988888888554 66666655432 56777777778876655555444
Q ss_pred HHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761 346 LQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389 (883)
Q Consensus 346 M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M 389 (883)
.++.|. .|...-+|...|+++++++++.+-
T Consensus 718 ~~~~g~--------------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGK--------------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhcc--------------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 444332 245556778889999988887654
No 281
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.08 E-value=1.7e+02 Score=28.87 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc------CCChhHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002761 143 IALARLFGSKGLATKGLEILAAMEKI------NYDIRQAWLILVEELVRNKY-LEDANKVFLRGAKGGLRATDEIYDLMI 215 (883)
Q Consensus 143 ~~LI~a~~~~g~~~~A~~l~~~m~~~------g~~pdvtyn~LI~~y~k~G~-~eeA~~lf~~M~~~gi~pd~~tyn~LI 215 (883)
|.++.-.+..+......++++.+... |.....+|++++.+.++..- ---+..+|.-|++.+.+++..-|..||
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44554444444554444444444211 11111256666666655444 334566666666666666666666666
Q ss_pred HHHHHc
Q 002761 216 AEDCKA 221 (883)
Q Consensus 216 ~a~~k~ 221 (883)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 666554
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=51.96 E-value=72 Score=29.21 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002761 122 GAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166 (883)
Q Consensus 122 ~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~ 166 (883)
++.+-++.+....+.|+.....+.++||-+.+++..|.++|+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455555666666677777788888888888888888888777665
No 283
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=51.46 E-value=5.3 Score=38.51 Aligned_cols=13 Identities=15% Similarity=0.186 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHc
Q 002761 209 EIYDLMIAEDCKA 221 (883)
Q Consensus 209 ~tyn~LI~a~~k~ 221 (883)
...+.++..|++.
T Consensus 43 ~~~~~L~~ly~~~ 55 (143)
T PF00637_consen 43 DLHTLLLELYIKY 55 (143)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhc
Confidence 3333333333333
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.81 E-value=4e+02 Score=32.22 Aligned_cols=116 Identities=19% Similarity=0.138 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHH--HHHHHH-HHHcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-
Q 002761 85 APRVNDVIYDMIAAGLSPGPRSF--HGLVVA-YTLNGDHEGAMHSLKRELS-------AGVRPLHETLIALARLFGSKG- 153 (883)
Q Consensus 85 ~~~A~~lf~~M~~~G~~pd~~ty--n~LI~a-~~~~g~~~~A~~lf~~M~~-------~Gi~Pd~~ty~~LI~a~~~~g- 153 (883)
...|.+.++.....|.. ..... .....+ ++...+++.|+.+|..... .| +.....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45677777777766521 11111 112223 4456678888888877765 44 2224444445554432
Q ss_pred ----CHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCCC
Q 002761 154 ----LATKGLEILAAMEKINYDIRQAWLILVEELVR-NKYLEDANKVFLRGAKGGL 204 (883)
Q Consensus 154 ----~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k-~G~~eeA~~lf~~M~~~gi 204 (883)
+...|..++......|.+.-...-..+..... ..+...|.++|......|.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 45667777777777765332211111111111 2446677777777666664
No 285
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=49.64 E-value=4.1e+02 Score=29.56 Aligned_cols=217 Identities=9% Similarity=0.050 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHH--hCCChhhHHHHHH--cCCCCChhHHHHHHHHHHccCCh---HHHHHHH--HHHhcCC-hHHHHH
Q 002761 21 TGVVPIRSAMSSPE--KKTRRKKQQRRQQ--KHGDSLLSTNGSVVSAAEQGLRL---IFMEELM--QHARNRD-APRVND 90 (883)
Q Consensus 21 pd~~syn~LI~~~~--k~g~~~~A~~M~~--~gv~Pd~~ty~~ll~a~~~~~~~---~~~~~L~--~~~k~G~-~~~A~~ 90 (883)
+.+..+|-+|.-|. ..+.-++..+++. .|+.++...--+++.++.-.... .....|. .+.+.|= ..-|.+
T Consensus 109 ~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~ 188 (412)
T KOG2297|consen 109 NSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKLFEENERKKLAMLTALLLSNGTLPATVLQSLLNDNLVKEGIALSFAVK 188 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHH
Confidence 34566677776553 2222222233332 37777777766666665332211 1111111 1222221 133555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 002761 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY 170 (883)
Q Consensus 91 lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~ 170 (883)
+|...... -..|.+|+.+-+.+.-+.-+++ ++||..|--..-.-+...|.-+...-.-.++.. |-
T Consensus 189 lFk~~~~E------k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~-~a 253 (412)
T KOG2297|consen 189 LFKEWLVE------KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE-GA 253 (412)
T ss_pred HHHHHHhh------ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH-HH
Confidence 55555432 2345556555554433333333 366666655555555444432221111111100 00
Q ss_pred ChhHHHHHHHHHHHHCCCHHHHHHHH-HHHHhCCCCCCH----HHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHH
Q 002761 171 DIRQAWLILVEELVRNKYLEDANKVF-LRGAKGGLRATD----EIYDLMIAEDCKAGDH-SNALEIAYEMEAAGRMATTF 244 (883)
Q Consensus 171 ~pdvtyn~LI~~y~k~G~~eeA~~lf-~~M~~~gi~pd~----~tyn~LI~a~~k~g~~-eeA~~lf~~M~~~G~~Pd~~ 244 (883)
....-..|.+-..+...+++..... ++|++.++ |+. +.|++++++---+.+- --|.+.++. ..
T Consensus 254 -~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK 322 (412)
T KOG2297|consen 254 -RKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LK 322 (412)
T ss_pred -HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HH
Confidence 0002233444444444555544433 45555555 443 4677777665433221 123333333 34
Q ss_pred HHHHHHHHHHHcCCHHHHH
Q 002761 245 HFNHLLSCQATCGIPEVAF 263 (883)
Q Consensus 245 tyn~LI~~y~k~G~~e~A~ 263 (883)
+|.-|+.++|..|+.+.++
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 6788888888888877654
No 286
>PRK11906 transcriptional regulator; Provisional
Probab=49.38 E-value=4.9e+02 Score=30.55 Aligned_cols=161 Identities=11% Similarity=-0.010 Sum_probs=97.2
Q ss_pred HHH--HHHHHHHHHcC-----CHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 002761 105 RSF--HGLVVAYTLNG-----DHEGAMHSLKRELS-AGVRPLHE-TLIALARLFGS---------KGLATKGLEILAAME 166 (883)
Q Consensus 105 ~ty--n~LI~a~~~~g-----~~~~A~~lf~~M~~-~Gi~Pd~~-ty~~LI~a~~~---------~g~~~~A~~l~~~m~ 166 (883)
..| ..++.|..... ..+.|+.+|.+... ..+.|+-. .|..+--++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 66777665522 35678889988772 23566533 33322222211 223456677777777
Q ss_pred HcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHH
Q 002761 167 KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAA-GRMATTF 244 (883)
Q Consensus 167 ~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~k~g~~eeA~~lf~~M~~~-G~~Pd~~ 244 (883)
+.+.........+-.++.-.|+++.|..+|++-.. +.||. .+|...--.+.-+|+.++|.+.++...+. -.+.-..
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 76543222444555555677789999999999876 44665 34444444455579999999999885443 2333344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 002761 245 HFNHLLSCQATCGIPEVAFATFEN 268 (883)
Q Consensus 245 tyn~LI~~y~k~G~~e~A~~lf~~ 268 (883)
..-..|+.|+..+ ++.|.++|-+
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHhh
Confidence 5555666888765 5667776654
No 287
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=49.22 E-value=6.1 Score=49.76 Aligned_cols=10 Identities=10% Similarity=0.258 Sum_probs=4.5
Q ss_pred HHHHHHhhhh
Q 002761 591 EVDELISRIK 600 (883)
Q Consensus 591 e~~~~~~~~~ 600 (883)
.++-++..+.
T Consensus 624 ~l~~ll~vl~ 633 (784)
T PF04931_consen 624 GLQLLLDVLD 633 (784)
T ss_pred HHHHHHHHhc
Confidence 3444444443
No 288
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=48.99 E-value=54 Score=24.67 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=8.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHH
Q 002761 180 VEELVRNKYLEDANKVFLRGA 200 (883)
Q Consensus 180 I~~y~k~G~~eeA~~lf~~M~ 200 (883)
-..|.+.|++++|.++|++..
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333333344444444443333
No 289
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=48.92 E-value=68 Score=29.64 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHH
Q 002761 122 GAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVE 181 (883)
Q Consensus 122 ~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~ 181 (883)
+..+-++.+....+.|+.....+.++||-+.+++..|.++|+.++..- .+.. .|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 444555555566677888888888888888888888888887766432 2223 5665554
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=47.33 E-value=6.4e+02 Score=31.16 Aligned_cols=258 Identities=13% Similarity=0.076 Sum_probs=125.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHHhcCC
Q 002761 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA-GVRP--------LHETLIALARLFGSKGL 154 (883)
Q Consensus 84 ~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~-Gi~P--------d~~ty~~LI~a~~~~g~ 154 (883)
.++.|.+..++ .|.+..|..|-....+.-.++.|...|-+.... |++. +...-.+=|.+| -|.
T Consensus 678 gledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~ 749 (1189)
T KOG2041|consen 678 GLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGE 749 (1189)
T ss_pred chHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcc
Confidence 34555554443 577888887777666666677777766554221 2211 001111223333 377
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHH
Q 002761 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT----DEIYDLMIAEDCKAGDHSNALEI 230 (883)
Q Consensus 155 ~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd----~~tyn~LI~a~~k~g~~eeA~~l 230 (883)
+++|.+++-.|-++.+ -|..+.+.|++-...++++. .|-..| ...|+.+-..++....+++|.+.
T Consensus 750 feeaek~yld~drrDL--------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRDL--------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hhHhhhhhhccchhhh--------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877766543 34556666666555555433 111111 14566666666666666666655
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhH
Q 002761 231 AYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310 (883)
Q Consensus 231 f~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~ 310 (883)
|..-... ...+.+|-+...+++-..+-..+. -|....-.|..++...| ..++|.+.|-+-
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp-------e~s~llp~~a~mf~svG---MC~qAV~a~Lr~- 878 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLP-------EDSELLPVMADMFTSVG---MCDQAVEAYLRR- 878 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC-------cccchHHHHHHHHHhhc---hHHHHHHHHHhc-
Confidence 5432110 123344444434433333333333 23333444555566666 444554443322
Q ss_pred hccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCcccc----ccCCCCcHHHHHHHHHHHcCCHHHHHHHH
Q 002761 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH----NEGNFGDPLSLYLRALCREGRIIELLEAL 386 (883)
Q Consensus 311 ~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~----~~~~~~dtYn~LI~~y~~~G~~~eA~~lf 386 (883)
+ .|- +.+..|.+.+.+.+|.++-+...-..+.+-+.. .... + -.---|..+-++|+.-+|-+++
T Consensus 879 ----s-~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~-~-~~~eaIe~~Rka~~~~daarll 946 (1189)
T KOG2041|consen 879 ----S-LPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLAD-A-NHMEAIEKDRKAGRHLDAARLL 946 (1189)
T ss_pred ----c-CcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhh-c-chHHHHHHhhhcccchhHHHHH
Confidence 1 121 234455555555555544332210000000000 0000 0 0012367788889999999999
Q ss_pred HHHhhC
Q 002761 387 EAMAKD 392 (883)
Q Consensus 387 ~~M~~~ 392 (883)
.+|.++
T Consensus 947 ~qmae~ 952 (1189)
T KOG2041|consen 947 SQMAER 952 (1189)
T ss_pred HHHhHH
Confidence 999653
No 291
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=46.95 E-value=11 Score=45.65 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=8.2
Q ss_pred CCCcchhhHHHHHHhhh
Q 002761 663 EPESQDVDRVKEKLVEA 679 (883)
Q Consensus 663 ~~~~~~~~~~~~~~~~~ 679 (883)
|.++.|-+....+...+
T Consensus 927 EE~gkdwdele~ea~~~ 943 (960)
T KOG1189|consen 927 EESGKDWDELEREARNA 943 (960)
T ss_pred hhhccchhhhHHHHhhc
Confidence 34555555554444333
No 292
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=46.92 E-value=4e+02 Score=28.74 Aligned_cols=188 Identities=13% Similarity=0.039 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002761 175 AWLILVEELVRNKYLEDANKVFLRGAKGGL--RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252 (883)
Q Consensus 175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi--~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~ 252 (883)
-|+--+. -.+.|++++|.+.|+.+..... +-...+--.++-++-+.+++++|...+++....--.-...-|-.-|.+
T Consensus 37 LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 4443333 2356777777777777665321 112244555666666777777777777666554322222334444444
Q ss_pred HHHc-------CCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHH
Q 002761 253 QATC-------GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325 (883)
Q Consensus 253 y~k~-------G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~ 325 (883)
++.- .+...+.+-|..|. .+|.-|=....-.+++.-+..+...+. |. =..
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~--------------~~i~ryPnS~Ya~dA~~~i~~~~d~LA---~~------Em~ 172 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFK--------------ELVQRYPNSRYAPDAKARIVKLNDALA---GH------EMA 172 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHH--------------HHHHHCCCCcchhhHHHHHHHHHHHHH---HH------HHH
Confidence 4421 22223333333333 233333333321222222222332221 10 024
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392 (883)
Q Consensus 326 LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~ 392 (883)
+-.-|.+.|.+..|..-|+.|.+....+..+ .+.+-.|..+|-+.|..++|...-.-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~------~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAV------REALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccch------HHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 4567999999999999999999764433222 224567889999999999998877666443
No 293
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=46.13 E-value=44 Score=24.08 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 002761 210 IYDLMIAEDCKAGDHSNALEIAYEM 234 (883)
Q Consensus 210 tyn~LI~a~~k~g~~eeA~~lf~~M 234 (883)
+++.|-..|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4444444444444444444444443
No 294
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.31 E-value=7.4e+02 Score=31.30 Aligned_cols=179 Identities=13% Similarity=0.084 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHH---HHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 002761 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL---ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217 (883)
Q Consensus 141 ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn---~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a 217 (883)
+...-|..+++...+..|..+- ...+..++.+-+ ..-+-+.+.|++++|..-|-+-... +.| ..+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 3455666677777777776653 344555553322 2234456788899988877665431 222 245666
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 002761 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297 (883)
Q Consensus 218 ~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d 297 (883)
|....+..+--.+++.+.+.|+. +...-+.||++|.|.++.+.-.++.+... .....-| .-..+..+-+.+.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~--~g~~~fd---~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD--KGEWFFD---VETALEILRKSNYLD 480 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC--Ccceeee---HHHHHHHHHHhChHH
Confidence 77777777777788888888876 56666788999999999988877776655 1111112 334566666777433
Q ss_pred cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347 (883)
Q Consensus 298 ~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~ 347 (883)
+|..+-..-. -+......++ -..+++++|++++..+.
T Consensus 481 ---~a~~LA~k~~-------~he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 481 ---EAELLATKFK-------KHEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred ---HHHHHHHHhc-------cCHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 6655433321 1333344444 45688999999887764
No 295
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.96 E-value=1.1e+02 Score=36.57 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 002761 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVR 185 (883)
Q Consensus 106 tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k 185 (883)
.-+.+++-+-+.|..++|+++- +|..- -.....+.|+++.|.++..+... ..-|..|-++..+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~s-----~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEANS-----EVKWRQLGDAALS 678 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhcc-----hHHHHHHHHHHhh
Confidence 4455566666667766666542 22211 11223455777777666544321 1367777777777
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002761 186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265 (883)
Q Consensus 186 ~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~l 265 (883)
.|++..|.+.|..-. -|..|+-.+...|+.+.-..+-....+.|. .|.-..+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHH
Confidence 777777777776543 255666666667766655555555555552 34444556677777777777
Q ss_pred HHHch
Q 002761 266 FENME 270 (883)
Q Consensus 266 f~~M~ 270 (883)
+.+-.
T Consensus 744 Li~t~ 748 (794)
T KOG0276|consen 744 LISTQ 748 (794)
T ss_pred HHhcC
Confidence 76543
No 296
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=44.67 E-value=5.4e+02 Score=29.52 Aligned_cols=32 Identities=9% Similarity=-0.008 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHh
Q 002761 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311 (883)
Q Consensus 277 ~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~ 311 (883)
..|-.-+.+++.++.-.| +.++|.+...+|.+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~---d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAG---DYEKAIQAAEKAFK 333 (374)
T ss_pred cccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhh
Confidence 456677788999999999 55588888888876
No 297
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=44.24 E-value=51 Score=23.73 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761 105 RSFHGLVVAYTLNGDHEGAMHSLKREL 131 (883)
Q Consensus 105 ~tyn~LI~a~~~~g~~~~A~~lf~~M~ 131 (883)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456666666666666666666666543
No 298
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=43.72 E-value=94 Score=28.49 Aligned_cols=47 Identities=6% Similarity=-0.106 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 224 ~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
.-++.+-+..+....+.|+..+.++-+.+|-+.+++..|.++|+.++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555555556666666666777777777777777777776655
No 299
>KOG2406 consensus MADS box transcription factor [Transcription]
Probab=43.63 E-value=1.6e+02 Score=34.47 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCHH-HHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhh
Q 002761 365 PLSLYLRALCREGRII-ELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP 417 (883)
Q Consensus 365 tYn~LI~~y~~~G~~~-eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~ 417 (883)
..++.+.||+-..-.+ +|.+.++....... +..++++.-|.|..|+..-+.+
T Consensus 232 LiSsAV~aFy~RD~id~ka~r~m~kF~petl-V~t~VtfTr~lYaqLvqQrf~p 284 (635)
T KOG2406|consen 232 LISSAVNAFYYRDPIDEKACRRMSKFLPETL-VTTTVTFTRCLYAQLVQQRFKP 284 (635)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHhhcCccce-EEEEeeeHHHHHHHHHHHhhcC
Confidence 3467778877665554 56666666644432 3555566668888888765544
No 300
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=42.43 E-value=6e+02 Score=29.47 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=72.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHH--HCCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHH------
Q 002761 148 LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELV--RNKYLEDANKVFLRGAKGGLRATDEIY---DLMIA------ 216 (883)
Q Consensus 148 a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~--k~G~~eeA~~lf~~M~~~gi~pd~~ty---n~LI~------ 216 (883)
++.-.|+.+.|.++-....+.. ++..+..++.+.| -.++.+.|..-|++-...+ |+-..- ..+..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 4455677788777766666543 2225555555433 3567778888887765532 443211 11111
Q ss_pred ----HHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 217 ----EDCKAGDHSNALEIAYEMEAA---GRMATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 217 ----a~~k~g~~eeA~~lf~~M~~~---G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
-..+.|.+..|.+.|.+.+.. .+.|+...|-..-....+.|+..+|..--+...
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 235677888888888777643 345566666666666777788888877776665
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=42.29 E-value=5.7 Score=38.26 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=49.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 002761 145 LARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD 223 (883)
Q Consensus 145 LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~ 223 (883)
+|+.+.+.+.+.....+++.+...+...+. ..|.|+..|++.+..+...++++.. +..-...++..|-+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 455556666667777777777765544444 6777777888777767776666521 11333456666666666
Q ss_pred hHHHHHHHHH
Q 002761 224 HSNALEIAYE 233 (883)
Q Consensus 224 ~eeA~~lf~~ 233 (883)
+++|.-++..
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.14 E-value=5.6e+02 Score=30.91 Aligned_cols=155 Identities=18% Similarity=0.094 Sum_probs=94.2
Q ss_pred HHhcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002761 79 HARNRDAPRVNDVIYDMIA-------AGLSPGPRSFHGLVVAYTLNG-----DHEGAMHSLKRELSAGVRPLHETLIALA 146 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~-------~G~~pd~~tyn~LI~a~~~~g-----~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI 146 (883)
+....+++.|...|..... .| +....+-+-..|.+.. +...|+.+|.+--..|.+ +...+-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHH
Confidence 6678899999999999877 55 2335566666666643 667799999888777743 444443333
Q ss_pred HHHHh-cCCHHHHHHHHHHHHHcCCChhHHHHHHHHHH--HHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 002761 147 RLFGS-KGLATKGLEILAAMEKINYDIRQAWLILVEEL--VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD 223 (883)
Q Consensus 147 ~a~~~-~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y--~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~ 223 (883)
.-... ..+...|.++|....+.|..+..-+-+++-.. .-..+...|...|.+..+.|. |-..---..+..+.. +.
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-cc
Confidence 33333 35678999999999999975443222222221 123457778888877777662 222111122233333 56
Q ss_pred hHHHHHHHHHHHHcCC
Q 002761 224 HSNALEIAYEMEAAGR 239 (883)
Q Consensus 224 ~eeA~~lf~~M~~~G~ 239 (883)
.+.+.-.+..+...|.
T Consensus 413 ~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 413 YDTALALYLYLAELGY 428 (552)
T ss_pred ccHHHHHHHHHHHhhh
Confidence 6666666666655543
No 303
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.81 E-value=4.5e+02 Score=27.78 Aligned_cols=25 Identities=8% Similarity=-0.100 Sum_probs=16.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCChh
Q 002761 15 VLSKSQTGVVPIRSAMSSPEKKTRRK 40 (883)
Q Consensus 15 ~~~p~~pd~~syn~LI~~~~k~g~~~ 40 (883)
..+| |+|....-+++..+...+--.
T Consensus 19 ~~YP-P~s~~~L~~Ll~~i~~~~~~~ 43 (226)
T PF13934_consen 19 GLYP-PKSDNDLRALLDLILSSNVSL 43 (226)
T ss_pred CCCC-ccCHHHHHHHHHHHhcCCcCH
Confidence 4566 777666777777776655433
No 304
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=41.75 E-value=1e+02 Score=28.51 Aligned_cols=45 Identities=7% Similarity=-0.073 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 226 eA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
+..+-+..+....+.|+..+..+.+.+|-+.+++..|.++|+.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444455555566666666666666666677777777766665
No 305
>PHA02876 ankyrin repeat protein; Provisional
Probab=41.65 E-value=6.4e+02 Score=31.13 Aligned_cols=110 Identities=8% Similarity=0.059 Sum_probs=51.7
Q ss_pred HHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCH---HHHHHHHHHHHHcCCcccHHHHHHHHH
Q 002761 233 EMEAAGRMATTFHF--NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT---ETYNCVIQAYTRAESYDRVQDVAELLG 307 (883)
Q Consensus 233 ~M~~~G~~Pd~~ty--n~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~---~tyn~LI~ay~~~G~~d~~~eAl~lf~ 307 (883)
.+.+.|..++.... .+-+...+..|+.+-+..+++.-. .++. ...+.|..+.+..+ ..... +
T Consensus 360 lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~ga------d~~~~~~~g~T~Lh~A~~~~~----~~~~v---k 426 (682)
T PHA02876 360 TLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGA------DIEALSQKIGTALHFALCGTN----PYMSV---K 426 (682)
T ss_pred HHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CccccCCCCCchHHHHHHcCC----HHHHH---H
Confidence 34456666554321 234444566777776666654322 2221 12234444433333 12222 3
Q ss_pred HhHhccCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCC
Q 002761 308 MMVEDHKRLQPNVKT---YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 361 (883)
Q Consensus 308 ~M~~~~~gi~Pd~~T---y~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~ 361 (883)
.+.+ .|..+|... .+.|..|....+.. .+.+.+.+.|..+......|.
T Consensus 427 ~Ll~--~gadin~~d~~G~TpLh~Aa~~~~~~----~iv~lLl~~Gad~n~~d~~g~ 477 (682)
T PHA02876 427 TLID--RGANVNSKNKDLSTPLHYACKKNCKL----DVIEMLLDNGADVNAINIQNQ 477 (682)
T ss_pred HHHh--CCCCCCcCCCCCChHHHHHHHhCCcH----HHHHHHHHCCCCCCCCCCCCC
Confidence 3444 466665543 35555554433333 345555666766665544443
No 306
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.33 E-value=59 Score=25.48 Aligned_cols=39 Identities=15% Similarity=-0.016 Sum_probs=32.1
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhcCCCccccCCChhHHHHHHH
Q 002761 471 TSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEE 513 (883)
Q Consensus 471 ~~l~~~c~~g~~~~A~~Ll~eM~~~G~~~lls~~~~~~~~vi~ 513 (883)
+++..+-+.|-..++..++++|.+.|++. ++..|..++.
T Consensus 7 GiL~~Ak~~GlI~~~~~~l~~l~~~g~~i----s~~l~~~~L~ 45 (48)
T PF11848_consen 7 GILLLAKRRGLISEVKPLLDRLQQAGFRI----SPKLIEEILR 45 (48)
T ss_pred HHHHHHHHcCChhhHHHHHHHHHHcCccc----CHHHHHHHHH
Confidence 45555667777789999999999999999 8888888764
No 307
>PHA02989 ankyrin repeat protein; Provisional
Probab=40.29 E-value=2.2e+02 Score=33.68 Aligned_cols=193 Identities=9% Similarity=-0.041 Sum_probs=90.8
Q ss_pred CCChhhHHHHHHcCCCCChhH--HHHHHHHHHccCChHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 002761 36 KTRRKKQQRRQQKHGDSLLST--NGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRS-FHGLVV 112 (883)
Q Consensus 36 ~g~~~~A~~M~~~gv~Pd~~t--y~~ll~a~~~~~~~~~~~~L~~~~k~G~~~~A~~lf~~M~~~G~~pd~~t-yn~LI~ 112 (883)
..+.+-+..+++.|..+|... .+.+...++..+ +..+ +.+.+.+.|..+|... ..+-+.
T Consensus 13 ~~~~~~v~~LL~~GadvN~~~~g~t~l~~~~~~~~--------------~~~~----iv~~Ll~~GAdvn~~~~~~tpL~ 74 (494)
T PHA02989 13 TVDKNALEFLLRTGFDVNEEYRGNSILLLYLKRKD--------------VKIK----IVKLLIDNGADVNYKGYIETPLC 74 (494)
T ss_pred cCcHHHHHHHHHcCCCcccccCCCCHHHHHHhcCC--------------CChH----HHHHHHHcCCCccCCCCCCCcHH
Confidence 455666688888899888641 112222222211 1222 3333445554444221 122233
Q ss_pred HHHHcCCH--HHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCh-hH---HHHHHHH
Q 002761 113 AYTLNGDH--EGAMHSLKRELSAGVRPLHET---LIALARLFGS--KGLATKGLEILAAMEKINYDI-RQ---AWLILVE 181 (883)
Q Consensus 113 a~~~~g~~--~~A~~lf~~M~~~Gi~Pd~~t---y~~LI~a~~~--~g~~~~A~~l~~~m~~~g~~p-dv---tyn~LI~ 181 (883)
.+++.+.. ....++.+.+.+.|..+|... .+.|..+... .+. .++.+.+.+.|..+ +. .-.+.+.
T Consensus 75 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~----~eiv~~Ll~~Gadin~~~d~~g~tpLh 150 (494)
T PHA02989 75 AVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINN----CDMLRFLLSKGINVNDVKNSRGYNLLH 150 (494)
T ss_pred HHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCc----HHHHHHHHHCCCCcccccCCCCCCHHH
Confidence 34444432 334567777788887776543 2334333221 233 35666777888877 32 1123334
Q ss_pred HHHHC--CCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHH
Q 002761 182 ELVRN--KYLEDANKVFLRGAKGGLRATDE---IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH--FNHLLSCQA 254 (883)
Q Consensus 182 ~y~k~--G~~eeA~~lf~~M~~~gi~pd~~---tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~t--yn~LI~~y~ 254 (883)
.++.. ++.+ +.+.+.+.|..++.. ...+-+..+++.+--..-.++.+.+.+.|..++... ..+++..+.
T Consensus 151 ~a~~~~~~~~~----iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~ 226 (494)
T PHA02989 151 MYLESFSVKKD----VIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFL 226 (494)
T ss_pred HHHHhccCCHH----HHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHH
Confidence 43332 3433 444455666655441 112233333333311122456666777787665443 234444443
No 308
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=40.26 E-value=7.1e+02 Score=29.71 Aligned_cols=162 Identities=10% Similarity=-0.020 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002761 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254 (883)
Q Consensus 175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~ 254 (883)
..-+++..++.+....-...+-.+|..-| -+...|-.++..|..+ ..+.-..+++++.+..+. |++.---|..-|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 45577777887777777777777877744 4667788888888877 556667777777776543 4444444555555
Q ss_pred HcCCHHHHHHHHHHchhCCCCCC-----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHH
Q 002761 255 TCGIPEVAFATFENMEYGEDYMK-----PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329 (883)
Q Consensus 255 k~G~~e~A~~lf~~M~~g~~gi~-----pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a 329 (883)
+ ++.+.+...|..... .-+. .-...|.-|+.-. | ++.+..+.+...+... .|..--.+.+.-+-.-
T Consensus 144 k-ik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i---~--dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 144 K-IKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI---G--DDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKK 214 (711)
T ss_pred H-hchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc---c--ccHHHHHHHHHHHHHh-hccchHHHHHHHHHHH
Confidence 5 777777777777652 1111 1123455444321 2 2455677777777664 4666666777777778
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 002761 330 FTKYCAVTEAIRHFRALQNY 349 (883)
Q Consensus 330 ~~k~G~~eeA~~lf~~M~~~ 349 (883)
|....++.+|.+++..+.+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 88889999999998877653
No 309
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=40.09 E-value=13 Score=45.10 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=10.8
Q ss_pred CCCCCCCCChHHHHHHHHhccc
Q 002761 716 DDEDWFPEDPFEAFKEMRKRKV 737 (883)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~ 737 (883)
++.||-.+ .-||.++=|+++.
T Consensus 929 ~gkdwdel-e~ea~~~dr~~~~ 949 (960)
T KOG1189|consen 929 SGKDWDEL-EREARNADREHGA 949 (960)
T ss_pred hccchhhh-HHHHhhcchhhch
Confidence 45566433 3455555555554
No 310
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.75 E-value=5.6e+02 Score=28.34 Aligned_cols=120 Identities=13% Similarity=-0.009 Sum_probs=67.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 002761 148 LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227 (883)
Q Consensus 148 a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA 227 (883)
.....|+...|..+|+............--.|..+|...|+.+.|..++..+...--....+....=|..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34566777888888877776544333355567777888888888888887775432111112222223334444444443
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 228 LEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 228 ~~lf~~M~~~G~~P-d~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
..+-...-. .| |...--.|-..|...|+.+.|.+.+-.+.
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333332 23 44444556666777777777766554444
No 311
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.11 E-value=8.6e+02 Score=30.32 Aligned_cols=342 Identities=12% Similarity=0.028 Sum_probs=185.6
Q ss_pred hcCChHHHHHHHHHHH--------HCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002761 81 RNRDAPRVNDVIYDMI--------AAGLSPGPRSFH-----GLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147 (883)
Q Consensus 81 k~G~~~~A~~lf~~M~--------~~G~~pd~~tyn-----~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~ 147 (883)
+..++++-..+.+++. ..|++.+..-|. .+|+-+...+.+..|+++-..|...-.. +...|.....
T Consensus 401 ~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~ 479 (829)
T KOG2280|consen 401 RTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWAR 479 (829)
T ss_pred ccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHH
Confidence 4455566555555443 346666665554 4688888899999999998776432222 2566777776
Q ss_pred HHHhcCC---HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHH
Q 002761 148 LFGSKGL---ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR----ATDEIYDLMIAEDCK 220 (883)
Q Consensus 148 a~~~~g~---~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~----pd~~tyn~LI~a~~k 220 (883)
-+.+..+ -+.+..+-.++... ..|.++|..+-.---.+|+.+-|..+++.=...+.. .+..-+..-+.-+..
T Consensus 480 ~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaie 558 (829)
T KOG2280|consen 480 RKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIE 558 (829)
T ss_pred HHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHh
Confidence 6666542 22233333333322 466678888888888899999999988764332211 122456677777888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHH----------HHHHHcCCHH------------HHHHHH--HHchh--CCC
Q 002761 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLL----------SCQATCGIPE------------VAFATF--ENMEY--GED 274 (883)
Q Consensus 221 ~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI----------~~y~k~G~~e------------~A~~lf--~~M~~--g~~ 274 (883)
.|+.+-...++..|...- +...|...| .-|+|..+-. .+...| +.-.. ...
T Consensus 559 s~d~~Li~~Vllhlk~~~---~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~ 635 (829)
T KOG2280|consen 559 SGDTDLIIQVLLHLKNKL---NRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIE 635 (829)
T ss_pred cCCchhHHHHHHHHHHHH---HHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhc
Confidence 888888888777766542 111221111 1222221111 111111 11000 001
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcc-------cHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761 275 YMKPDTETYNCVIQAYTRAESYD-------RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347 (883)
Q Consensus 275 gi~pd~~tyn~LI~ay~~~G~~d-------~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~ 347 (883)
+..|+.. ..-++|++..... +-.+-+++++..... .|..-..-|.+-.+.-+...|.-.+|.++-.+.+
T Consensus 636 ~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q-~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk 711 (829)
T KOG2280|consen 636 GRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQ-FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK 711 (829)
T ss_pred ccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-hccccccCcHHHHHHHHHHccchHHHHHHHHhcC
Confidence 2223222 2233344433211 111223333333332 2333334445555666777888888888766654
Q ss_pred hCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcch
Q 002761 348 NYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYE 427 (883)
Q Consensus 348 ~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~ 427 (883)
- |.-. .|=.=+.+++..+++++-+++-..++. |= .|.-
T Consensus 712 i----pdKr--------~~wLk~~aLa~~~kweeLekfAkskks------PI------Gy~P------------------ 749 (829)
T KOG2280|consen 712 I----PDKR--------LWWLKLTALADIKKWEELEKFAKSKKS------PI------GYLP------------------ 749 (829)
T ss_pred C----cchh--------hHHHHHHHHHhhhhHHHHHHHHhccCC------CC------Cchh------------------
Confidence 1 1100 244567888888888888777777632 20 0122
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHhcCCCCCCCccceeccchHHHHHHHHHHhhchHHHHHHHHH
Q 002761 428 IDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRT 491 (883)
Q Consensus 428 ~D~l~~~~~~~G~~~eA~~l~~~m~~~g~~Pd~~~~ty~~li~~~l~~~c~~g~~~~A~~Ll~e 491 (883)
+..+|.+.|+.+||..++.+..... --...+.+.|.+.+|.++--+
T Consensus 750 ---FVe~c~~~~n~~EA~KYiprv~~l~---------------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 ---FVEACLKQGNKDEAKKYIPRVGGLQ---------------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ---HHHHHHhcccHHHHhhhhhccCChH---------------HHHHHHHHhccHHHHHHHHHH
Confidence 3345666999999999997432111 134457777887777776543
No 312
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=38.90 E-value=10 Score=49.60 Aligned_cols=6 Identities=50% Similarity=0.766 Sum_probs=2.4
Q ss_pred HhcCCc
Q 002761 802 IRAPLP 807 (883)
Q Consensus 802 ~~~~~~ 807 (883)
||--||
T Consensus 362 i~f~lp 367 (2849)
T PTZ00415 362 IEFTLP 367 (2849)
T ss_pred EEEecC
Confidence 333343
No 313
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=38.75 E-value=21 Score=43.25 Aligned_cols=12 Identities=42% Similarity=0.495 Sum_probs=7.7
Q ss_pred CcHHHHHHHhhh
Q 002761 806 LPSAFLKILQKT 817 (883)
Q Consensus 806 ~~~~~~~~~~~~ 817 (883)
|-.-|.+.||.+
T Consensus 340 LddE~~KsLq~~ 351 (595)
T PF05470_consen 340 LDDEFTKSLQNI 351 (595)
T ss_pred HHHHHHHHHhcC
Confidence 445677777765
No 314
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=38.58 E-value=5.8e+02 Score=28.15 Aligned_cols=135 Identities=8% Similarity=0.053 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHH-cCCChhH-HHHHHHHHHHH-CC-CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002761 155 ATKGLEILAAMEK-INYDIRQ-AWLILVEELVR-NK-YLEDANKVFLRGAK-GGLRATDEIYDLMIAEDCKAGDHSNALE 229 (883)
Q Consensus 155 ~~~A~~l~~~m~~-~g~~pdv-tyn~LI~~y~k-~G-~~eeA~~lf~~M~~-~gi~pd~~tyn~LI~a~~k~g~~eeA~~ 229 (883)
+.+|+.+|+..-- ..+--|. +-..|++.... .+ ....-.++.+-+.. .|-.++..+.-++|..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4556666652211 1222232 44444444444 11 23333334444333 2345777788888999999999999888
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----chhCCCCCCCCHHHHHHHHHHHH
Q 002761 230 IAYEMEAA-GRMATTFHFNHLLSCQATCGIPEVAFATFEN-----MEYGEDYMKPDTETYNCVIQAYT 291 (883)
Q Consensus 230 lf~~M~~~-G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~-----M~~g~~gi~pd~~tyn~LI~ay~ 291 (883)
++..-... +..-|...|..+|+.-.+.|+..-...+.++ ++ +.++.-+...-.++-..+-
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwik--R~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIK--RNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEee--ecCCcCCHHHHHHHHHHHH
Confidence 88877655 5666888899999999999998888887764 33 5666666655555544443
No 315
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=38.51 E-value=3.9e+02 Score=26.21 Aligned_cols=73 Identities=12% Similarity=0.014 Sum_probs=37.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002761 79 HARNRDAPRVNDVIYDMIAAGL--SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~--~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~ 151 (883)
..+.|++..|.+.|+.+..+-- .-..-.---|+.+|-+.+++++|...+++.++....--.+-|...+.|++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3345666666666666665310 112233444566666666666666666666654322222345555555443
No 316
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.88 E-value=2.8e+02 Score=28.75 Aligned_cols=97 Identities=9% Similarity=0.029 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHH-HHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH----H
Q 002761 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ-AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK----T 322 (883)
Q Consensus 248 ~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~-ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~----T 322 (883)
...-.....|++++|..-++++...-..++.-...|+.+.. +||.++.- ..-+|.-+|.-... +..|... .
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~Q-EyvEA~~l~~~l~~---~~~ps~~EL~V~ 109 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQ-EYVEATLLYSILKD---GRLPSPEELGVP 109 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHH-HHHHHHHHHHHHhc---CCCCCHHHcCCC
Confidence 33334455666666666665554200111223445555555 67777643 35567666666554 4444442 2
Q ss_pred HHHHHHHH--------------HHcCCHHHHHHHHHHHHh
Q 002761 323 YALLVECF--------------TKYCAVTEAIRHFRALQN 348 (883)
Q Consensus 323 y~~LI~a~--------------~k~G~~eeA~~lf~~M~~ 348 (883)
+...|.+. .+.|+++.|.++++-|.+
T Consensus 110 ~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 110 PIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22233322 356888889888888875
No 317
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.48 E-value=2.6e+02 Score=29.01 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=71.0
Q ss_pred HHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ccccccCCCCcHHHHHHH-HHHHcC
Q 002761 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT-KVLHNEGNFGDPLSLYLR-ALCREG 377 (883)
Q Consensus 300 ~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~-~~~~~~~~~~dtYn~LI~-~y~~~G 377 (883)
++++++-+++.. ++...-...+.|++++|...++.+.+.-..- ... . .|..+.. +||.++
T Consensus 20 EE~l~lsRei~r-----------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l---~----~~pel~~ag~~~~a 81 (204)
T COG2178 20 EEALKLSREIVR-----------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLL---A----GFPELYFAGFVTTA 81 (204)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH---h----hhHHHHHHHhhcch
Confidence 577777777765 3444455678899999998888776411000 000 0 2445544 777776
Q ss_pred C--HHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHhCCcHHHHHHHHHHhc
Q 002761 378 R--IIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRG 452 (883)
Q Consensus 378 ~--~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~~G~~~eA~~l~~~m~ 452 (883)
. +-+|.-++.-....+++ .|+.. +..+...+.+.++...++..+. ++ ....|.+++|+++++-|.
T Consensus 82 ~QEyvEA~~l~~~l~~~~~p-s~~EL--~V~~~~YilGl~D~vGELrR~~--le-----~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 82 LQEYVEATLLYSILKDGRLP-SPEEL--GVPPIAYILGLADAVGELRRHV--LE-----LLRKGSFEEAERFLKFME 148 (204)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CHHHc--CCCHHHHHHHHHHHHHHHHHHH--HH-----HHHhccHHHHHHHHHHHH
Confidence 5 45788788777777654 33311 1223344555444333322111 11 133789999999988654
No 318
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.29 E-value=1.4e+02 Score=27.75 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002761 106 SFHGLVVAYTLNGDHEGAMHSLKRELS 132 (883)
Q Consensus 106 tyn~LI~a~~~~g~~~~A~~lf~~M~~ 132 (883)
-|+.|+.-|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 388888888888888888888888765
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=37.29 E-value=4e+02 Score=26.44 Aligned_cols=18 Identities=6% Similarity=0.156 Sum_probs=8.5
Q ss_pred HHCCCHHHHHHHHHHHHh
Q 002761 184 VRNKYLEDANKVFLRGAK 201 (883)
Q Consensus 184 ~k~G~~eeA~~lf~~M~~ 201 (883)
.+.|++++|.++|++..+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 344444444444444443
No 320
>PHA02989 ankyrin repeat protein; Provisional
Probab=37.26 E-value=2.9e+02 Score=32.57 Aligned_cols=142 Identities=10% Similarity=-0.009 Sum_probs=71.1
Q ss_pred HHHHHHHHCCCCCCHHH-HHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCH--HHHHHHHH
Q 002761 90 DVIYDMIAAGLSPGPRS-FHGLVVAYTLNG--DHEGAMHSLKRELSAGVRPLHETL-IALARLFGSKGLA--TKGLEILA 163 (883)
Q Consensus 90 ~lf~~M~~~G~~pd~~t-yn~LI~a~~~~g--~~~~A~~lf~~M~~~Gi~Pd~~ty-~~LI~a~~~~g~~--~~A~~l~~ 163 (883)
++.+.+.+.|..+|... -++.+..++..+ ..+ +.+.+.+.|..+|...+ .+-+.++++.+.. ....++.+
T Consensus 17 ~~v~~LL~~GadvN~~~~g~t~l~~~~~~~~~~~~----iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~ 92 (494)
T PHA02989 17 NALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIK----IVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVK 92 (494)
T ss_pred HHHHHHHHcCCCcccccCCCCHHHHHHhcCCCChH----HHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHH
Confidence 34445566787777652 123333334333 333 33445567877664321 2233344444432 34467888
Q ss_pred HHHHcCCChhH----HHHHHHHHHHH--CCCHHHHHHHHHHHHhCCCCC-CH---HHHHHHHHHHHH-cCChHHHHHHHH
Q 002761 164 AMEKINYDIRQ----AWLILVEELVR--NKYLEDANKVFLRGAKGGLRA-TD---EIYDLMIAEDCK-AGDHSNALEIAY 232 (883)
Q Consensus 164 ~m~~~g~~pdv----tyn~LI~~y~k--~G~~eeA~~lf~~M~~~gi~p-d~---~tyn~LI~a~~k-~g~~eeA~~lf~ 232 (883)
.+.+.|..++. -++.|..+... .|.. ++.+-+.+.|..+ +. .-++.|.-++.. .++. ++.+
T Consensus 93 ~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~----eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~----~iv~ 164 (494)
T PHA02989 93 LLLKFGADINLKTFNGVSPIVCFIYNSNINNC----DMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKK----DVIK 164 (494)
T ss_pred HHHHCCCCCCCCCCCCCcHHHHHHHhcccCcH----HHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCH----HHHH
Confidence 88899977664 13444433221 2333 4555566677766 33 223344333322 2333 4556
Q ss_pred HHHHcCCCCCH
Q 002761 233 EMEAAGRMATT 243 (883)
Q Consensus 233 ~M~~~G~~Pd~ 243 (883)
.+.+.|..|+.
T Consensus 165 ~Ll~~Gadi~~ 175 (494)
T PHA02989 165 ILLSFGVNLFE 175 (494)
T ss_pred HHHHcCCCccc
Confidence 66677877654
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=36.77 E-value=2.5e+02 Score=29.26 Aligned_cols=74 Identities=18% Similarity=0.116 Sum_probs=33.4
Q ss_pred HHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCC-CCCCHHHHHHHHHHHHHcCCHHH
Q 002761 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR-LQPNVKTYALLVECFTKYCAVTE 338 (883)
Q Consensus 260 e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~g-i~Pd~~Ty~~LI~a~~k~G~~ee 338 (883)
+.|.+.|-.+. ..+.--+....-+|..-|.+. +..+++.++....+.... -.+|...+.+|.+.|-+.|+++.
T Consensus 123 ~~A~~~fL~~E--~~~~l~t~elq~aLAtyY~kr----D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 123 QEALRRFLQLE--GTPELETAELQYALATYYTKR----DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred HHHHHHHHHHc--CCCCCCCHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34555555554 333333333333333333322 234555555554432111 14455555555555555555555
Q ss_pred H
Q 002761 339 A 339 (883)
Q Consensus 339 A 339 (883)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 4
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=36.28 E-value=4.4e+02 Score=26.16 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHhHhccCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002761 298 RVQDVAELLGMMVEDHKRLQPNV---KTYALLVECFTKYCAVTEAIRHFRALQNYE 350 (883)
Q Consensus 298 ~~~eAl~lf~~M~~~~~gi~Pd~---~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~ 350 (883)
...++..++..|.- ++|+. .+|-..| +...|++.+|.++|+.+.+..
T Consensus 25 d~~D~e~lLdALrv----LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 25 DPYDAQAMLDALRV----LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred CHHHHHHHHHHHHH----hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 44567777777753 55554 4444444 557888888888888887644
No 323
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=35.64 E-value=28 Score=29.30 Aligned_cols=38 Identities=29% Similarity=0.650 Sum_probs=25.4
Q ss_pred CccHHHHHHHhhccccc-------------hhHHHHhhhccccCccCCchh
Q 002761 826 SPLYDEIISLCLDLGEL-------------DAAVAIVADMETTGIAVPDQT 863 (883)
Q Consensus 826 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 863 (883)
-|||++|+.+...-|.. .-|-.|+-.||..||--|.+.
T Consensus 5 D~ly~~a~~~V~~~~~~S~S~lQR~~rIGynrAariid~LE~~GiVs~~~~ 55 (65)
T PF09397_consen 5 DPLYEEAVEFVIEEGKASISLLQRKFRIGYNRAARIIDQLEEEGIVSPANG 55 (65)
T ss_dssp STTHHHHHHHHHHCTCECHHHHHHHHT--HHHHHHHHHHHHHCTSBE---T
T ss_pred cHHHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCCCC
Confidence 46777777776655432 356789999999999877653
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=35.45 E-value=2.5e+02 Score=29.31 Aligned_cols=77 Identities=16% Similarity=0.035 Sum_probs=47.7
Q ss_pred HCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHH
Q 002761 185 RNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA---GRMATTFHFNHLLSCQATCGIPEV 261 (883)
Q Consensus 185 k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~---G~~Pd~~tyn~LI~~y~k~G~~e~ 261 (883)
+.|+ +.|.+.|-.+...+.--++..-..| ..|-...+.++|..++....+. +-.+|...+.+|.+.|-+.|+.+.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3343 5677777777766554443333333 3444466777777777666542 335677777777777777777776
Q ss_pred HH
Q 002761 262 AF 263 (883)
Q Consensus 262 A~ 263 (883)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
No 325
>PHA03100 ankyrin repeat protein; Provisional
Probab=34.67 E-value=2.9e+02 Score=32.14 Aligned_cols=159 Identities=9% Similarity=-0.007 Sum_probs=72.3
Q ss_pred HCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHH
Q 002761 185 RNKYLEDANKVFLRGAKGGLRATDE--IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH--FNHLLSCQATCGIPE 260 (883)
Q Consensus 185 k~G~~eeA~~lf~~M~~~gi~pd~~--tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~t--yn~LI~~y~k~G~~e 260 (883)
+.|+.+-+..+ .+.|..++.. .-.+.+..++..|. .-.++++.+.+.|..++... ..+-+...++.|+.+
T Consensus 117 ~~~~~~iv~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~ 190 (480)
T PHA03100 117 KSNSYSIVEYL----LDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNID 190 (480)
T ss_pred ccChHHHHHHH----HHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHH
Confidence 55555443333 3345444332 12244555555552 12234455556676654332 234566677777777
Q ss_pred HHHHHHHHchh-C-CCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHH--HHHHHHHHHcCCH
Q 002761 261 VAFATFENMEY-G-EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY--ALLVECFTKYCAV 336 (883)
Q Consensus 261 ~A~~lf~~M~~-g-~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty--~~LI~a~~k~G~~ 336 (883)
-+..+++.-.. . .....+....+.+.+...+..|. ...++++.+.+ .|..+|.... .+-+...+..|..
T Consensus 191 iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~iv~~Ll~--~g~din~~d~~g~TpL~~A~~~~~~ 263 (480)
T PHA03100 191 VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE-----ITLEVVNYLLS--YGVPINIKDVYGFTPLHYAVYNNNP 263 (480)
T ss_pred HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc-----CcHHHHHHHHH--cCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 66666553220 0 00001112222444444555663 11224444555 4665553321 2334444566665
Q ss_pred HHHHHHHHHHHhCCCCCccccccC
Q 002761 337 TEAIRHFRALQNYEGGTKVLHNEG 360 (883)
Q Consensus 337 eeA~~lf~~M~~~~~~~~~~~~~~ 360 (883)
+ +++.+.+.|..+......|
T Consensus 264 ~----iv~~Ll~~gad~n~~d~~g 283 (480)
T PHA03100 264 E----FVKYLLDLGANPNLVNKYG 283 (480)
T ss_pred H----HHHHHHHcCCCCCccCCCC
Confidence 4 4444555665555544444
No 326
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.19 E-value=7.3e+02 Score=28.05 Aligned_cols=150 Identities=11% Similarity=-0.007 Sum_probs=100.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HH--HHHHHHHHhcCCHH
Q 002761 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE--TL--IALARLFGSKGLAT 156 (883)
Q Consensus 81 k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~--ty--~~LI~a~~~~g~~~ 156 (883)
-.|+..+|...++++.+. .+.|..+++-.=.+|.-+|+...-...+++.... ..||.. +| ...--++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 357778888888888764 3668889999999999999999988888887644 223332 23 33344556789999
Q ss_pred HHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002761 157 KGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKG---G-LRATDEIYDLMIAEDCKAGDHSNALEIA 231 (883)
Q Consensus 157 ~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~---g-i~pd~~tyn~LI~a~~k~g~~eeA~~lf 231 (883)
+|.+.-++..+.+. .|. .-.++-+.+--+|+..++.+...+-... + +.. ..-|=...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mla-sHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLA-SHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHH-hhhhHHHHHhhhcccchhHHHHHH
Confidence 99998887776543 222 4557777778899999998877653321 0 000 111222222345568899999999
Q ss_pred HHH
Q 002761 232 YEM 234 (883)
Q Consensus 232 ~~M 234 (883)
+.=
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 753
No 327
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=33.71 E-value=34 Score=28.64 Aligned_cols=37 Identities=27% Similarity=0.554 Sum_probs=27.4
Q ss_pred CccHHHHHHHhhccccc-------------hhHHHHhhhccccCccCCch
Q 002761 826 SPLYDEIISLCLDLGEL-------------DAAVAIVADMETTGIAVPDQ 862 (883)
Q Consensus 826 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 862 (883)
-|||++|+.+.+.-|.. .-|-.|+-.||..||--|.+
T Consensus 4 D~ly~~a~~~V~~~~~~S~S~lQR~~~IGynrAariid~lE~~GiV~p~~ 53 (63)
T smart00843 4 DELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPAN 53 (63)
T ss_pred cHHHHHHHHHHHHhCCCChHHHHHHHhcchhHHHHHHHHHHHCcCCCCCC
Confidence 46777777777665542 45778999999999977764
No 328
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=33.54 E-value=16 Score=43.34 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=13.4
Q ss_pred ccCCCCCCCCCCChHHHHH
Q 002761 712 VEDDDDEDWFPEDPFEAFK 730 (883)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~ 730 (883)
-++.+++||-.++--+|+.
T Consensus 975 ~DeE~gEDwdele~kaa~~ 993 (1001)
T COG5406 975 SDEEDGEDWDELESKAAYD 993 (1001)
T ss_pred cccccccchhhHhhhhhhh
Confidence 4456788998777666654
No 329
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.29 E-value=30 Score=37.01 Aligned_cols=19 Identities=21% Similarity=0.115 Sum_probs=10.9
Q ss_pred hhhcCCCCCchhhHHHHHH
Q 002761 757 EITNRPPQKWSQEWEVELA 775 (883)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~ 775 (883)
--+.......+||-=.+-|
T Consensus 176 ~k~~~~~~~lTQeElL~EA 194 (240)
T PF05764_consen 176 KKKKQEERPLTQEELLEEA 194 (240)
T ss_pred ccccccCCCCCHHHHHHHH
Confidence 3445556677887544444
No 330
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=33.16 E-value=53 Score=31.46 Aligned_cols=68 Identities=21% Similarity=0.100 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHhcCCcHHHHHHHhhhcccccccCCccHHHHHHHhhccccchhHHHH
Q 002761 770 WEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAI 848 (883)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (883)
-|-.=|.+++.-...+||+|+ +-..++ .....+|+..-+.=..=-.+.|.+++..|-..|..++|..+
T Consensus 45 eE~~HA~~~~~~l~~l~g~~~----------~~~~~~-~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f 112 (134)
T cd01041 45 NEKEHAKGHFKLLKGLGGGDT----------GPPIGI-GDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSF 112 (134)
T ss_pred HHHHHHHHHHHHHhcCCCCCc----------CCCCCc-chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 355668889999999999999 112233 23445555543322211358899999999988888777543
No 331
>PRK09687 putative lyase; Provisional
Probab=32.77 E-value=6.9e+02 Score=27.29 Aligned_cols=203 Identities=10% Similarity=-0.034 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCC
Q 002761 101 SPGPRSFHGLVVAYTLNGDH----EGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA-----TKGLEILAAMEKINYD 171 (883)
Q Consensus 101 ~pd~~tyn~LI~a~~~~g~~----~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~-----~~A~~l~~~m~~~g~~ 171 (883)
.+|...--..+.++++-|.. .+++.++..+... .|+...-...+.+++..+.. ..+...+..... .
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D 139 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---D 139 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---C
Confidence 45556666666677777653 4566666665332 35555555666666554321 122333322222 2
Q ss_pred hhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002761 172 IRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAG-DHSNALEIAYEMEAAGRMATTFHFNHL 249 (883)
Q Consensus 172 pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g-~~eeA~~lf~~M~~~G~~Pd~~tyn~L 249 (883)
++. +--..+.++++.|+ .+|...+-.+... +|...-...+.++.+.+ ....+...+..+.. .+|..+-...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 233 44466666777776 4555666555542 44445555555666543 23455555555553 3466777777
Q ss_pred HHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHH
Q 002761 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329 (883)
Q Consensus 250 I~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a 329 (883)
+.++++.|+..-.-.+.+.+. .++. .-..+.++...|. .+|+..+..+.. -.||..+-...+.+
T Consensus 213 ~~aLg~~~~~~av~~Li~~L~------~~~~--~~~a~~ALg~ig~----~~a~p~L~~l~~----~~~d~~v~~~a~~a 276 (280)
T PRK09687 213 IIGLALRKDKRVLSVLIKELK------KGTV--GDLIIEAAGELGD----KTLLPVLDTLLY----KFDDNEIITKAIDK 276 (280)
T ss_pred HHHHHccCChhHHHHHHHHHc------CCch--HHHHHHHHHhcCC----HhHHHHHHHHHh----hCCChhHHHHHHHH
Confidence 888888887543333334433 2332 3356777777773 257777777764 23566666655655
Q ss_pred HH
Q 002761 330 FT 331 (883)
Q Consensus 330 ~~ 331 (883)
|.
T Consensus 277 ~~ 278 (280)
T PRK09687 277 LK 278 (280)
T ss_pred Hh
Confidence 54
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=32.70 E-value=14 Score=45.39 Aligned_cols=10 Identities=10% Similarity=-0.100 Sum_probs=4.9
Q ss_pred CCCCChhhHH
Q 002761 547 QGLPTDGTRN 556 (883)
Q Consensus 547 ~g~~~~~~~~ 556 (883)
+|..||.-.+
T Consensus 1271 ~G~FHP~g~e 1280 (1516)
T KOG1832|consen 1271 GGGFHPSGNE 1280 (1516)
T ss_pred cccccCCCce
Confidence 3445665433
No 333
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=32.53 E-value=36 Score=42.55 Aligned_cols=49 Identities=35% Similarity=0.561 Sum_probs=36.8
Q ss_pred cCCCCCchh----hHHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHhcCCcHHHHHHHhhhccccccc
Q 002761 760 NRPPQKWSQ----EWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVF 824 (883)
Q Consensus 760 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (883)
.+-|..|-= -.|-++|+.||+|.|+|+=|-| |=-..+++|.-|--||-|
T Consensus 162 vkDP~LW~VKC~iG~Er~~a~~LMrK~i~~~~t~~----------------plqI~Sv~a~D~lkGyIY 214 (1024)
T KOG1999|consen 162 VKDPNLWIVKCKIGREREVAFCLMRKFIELDKTDT----------------PLQIKSVFAKDHLKGYIY 214 (1024)
T ss_pred CCCCCeeEEEeccccHHHHHHHHHHHHHhhcccCC----------------CceEEEEEeccccceeEE
Confidence 466888863 4688899999999999984432 334567788899999865
No 334
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.28 E-value=39 Score=32.69 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=25.7
Q ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002761 182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218 (883)
Q Consensus 182 ~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~ 218 (883)
.+-+.|.-.+|..+|.+|...|-+||. |+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 344456677888899999988888874 67777654
No 335
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=32.18 E-value=68 Score=36.50 Aligned_cols=14 Identities=21% Similarity=0.112 Sum_probs=8.8
Q ss_pred ChhHHHHHHHHHHh
Q 002761 504 SESDYVRVEERLKK 517 (883)
Q Consensus 504 ~~~~~~~vi~~l~k 517 (883)
.|.+....+..|+.
T Consensus 411 ~w~d~~dfle~La~ 424 (572)
T KOG2423|consen 411 GWNDSTDFLEKLAI 424 (572)
T ss_pred ccccHHHHHHHHHH
Confidence 56666666666654
No 336
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=32.15 E-value=2.3e+02 Score=31.29 Aligned_cols=55 Identities=16% Similarity=0.043 Sum_probs=26.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 002761 145 LARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199 (883)
Q Consensus 145 LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M 199 (883)
+-+.|..+|.+.+|.+++....+...-....|-.|+..|+..|+--.|.+-++.|
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344555555555555555555443222224445555555555544444444444
No 337
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=32.14 E-value=8.9e+02 Score=28.42 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCCcce
Q 002761 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM 401 (883)
Q Consensus 323 y~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~ 401 (883)
...|+.-|...|++.+|.+..+++---.....+ .|-+++.+.-+.|+-..-+.++++.-..|+ ++.+.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEv---------VkkAlVm~mEkk~d~t~~ldLLk~cf~sgl-IT~nQM 580 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEV---------VKKALVMVMEKKGDSTMILDLLKECFKSGL-ITTNQM 580 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHH---------HHHHHHHHHHhcCcHHHHHHHHHHHHhcCc-eeHHHh
Confidence 356788899999999999988876321111111 578999999999999999999999988886 444443
No 338
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=31.92 E-value=6.1e+02 Score=26.42 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCc--------HHHHHHHHHHHcCCHHHHHHHHHH
Q 002761 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD--------PLSLYLRALCREGRIIELLEALEA 388 (883)
Q Consensus 324 ~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~d--------tYn~LI~~y~~~G~~~eA~~lf~~ 388 (883)
.+++..|-+.-++.++.++++.|.+..+.-+.. .|..+. .-|.....|.+.|.++-|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~L--KGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSL--KGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc--cCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 567788999999999999999998644322211 111111 568888999999999999999883
No 339
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=31.55 E-value=6.2e+02 Score=26.38 Aligned_cols=171 Identities=11% Similarity=0.001 Sum_probs=87.2
Q ss_pred CCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002761 98 AGLSPGPRSFHGLVVAYTLN----GDHEGAMHSLKRELSAGVRPLHE----TLIALARLFGSKGLATKGLEILAAMEKIN 169 (883)
Q Consensus 98 ~G~~pd~~tyn~LI~a~~~~----g~~~~A~~lf~~M~~~Gi~Pd~~----ty~~LI~a~~~~g~~~~A~~l~~~m~~~g 169 (883)
.|+.++...+|-++..+.+. +.++-++.+=.+....++.++-. ....-+..|-+.|++..--.+|-.....-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 46667777778777777654 34455555555555555555433 23333456666677666555554433221
Q ss_pred CChhH--HHH-HHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 002761 170 YDIRQ--AWL-ILVEELVRNK--YLEDANKVFLRGAKGGLRATD-------EIYDLMIAEDCKAGDHSNALEIAYEMEAA 237 (883)
Q Consensus 170 ~~pdv--tyn-~LI~~y~k~G--~~eeA~~lf~~M~~~gi~pd~-------~tyn~LI~a~~k~g~~eeA~~lf~~M~~~ 237 (883)
-.+.. .+. .+-.++.+.- +..--+--|.+-.....+-|. .+=-+++-.|-+.-++.++.++++.|.+.
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 111 1111111110 111111122222211111111 12235666777777888888888888765
Q ss_pred CCC--------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002761 238 GRM--------------ATTFHFNHLLSCQATCGIPEVAFATFEN 268 (883)
Q Consensus 238 G~~--------------Pd~~tyn~LI~~y~k~G~~e~A~~lf~~ 268 (883)
.+. +--...|.-...+.++|.++.|..++++
T Consensus 162 ~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 162 QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 332 2334557777778888888888888764
No 340
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=31.49 E-value=5.5e+02 Score=25.77 Aligned_cols=104 Identities=19% Similarity=0.133 Sum_probs=51.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002761 80 ARNRDAPRVNDVIYDMIAAGLSPG---PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156 (883)
Q Consensus 80 ~k~G~~~~A~~lf~~M~~~G~~pd---~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~ 156 (883)
.+.++.+.+..++..|... .|. ..++-.++ +.+.|++.+|..+|+++...+ |...-...|+..|..... +
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~-D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALG-D 93 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcC-C
Confidence 4456777777777777653 343 33444433 456788888888888875542 332233344433333222 2
Q ss_pred HHHHHH-HHHHHcCCChhHHHHHHHHHHHHCCCHHHH
Q 002761 157 KGLEIL-AAMEKINYDIRQAWLILVEELVRNKYLEDA 192 (883)
Q Consensus 157 ~A~~l~-~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA 192 (883)
...+.+ .++...+-.|+. ..|+..+........|
T Consensus 94 ~~Wr~~A~evle~~~d~~a--~~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 94 PSWRRYADEVLESGADPDA--RALVRALLARADLEPA 128 (160)
T ss_pred hHHHHHHHHHHhcCCChHH--HHHHHHHHHhccccch
Confidence 223333 234444444433 2444444444444333
No 341
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=31.48 E-value=8.8e+02 Score=28.16 Aligned_cols=266 Identities=14% Similarity=-0.020 Sum_probs=145.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHH--HHc--CCChh-H-HHHHHHHHH
Q 002761 113 AYTLNGDHEGAMHSLKRELSAGVR---PLHETLIALARLFGSKGLATKGLEILAAM--EKI--NYDIR-Q-AWLILVEEL 183 (883)
Q Consensus 113 a~~~~g~~~~A~~lf~~M~~~Gi~---Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m--~~~--g~~pd-v-tyn~LI~~y 183 (883)
-+|+.|+....+.+|+...+.|-. .=...|.-|-++|.-.+++++|++.|..= +.+ |-... . +...|-+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 478999999999999999888743 22334667777888888999999886421 111 10000 1 222233333
Q ss_pred HHCCCHHHHH-----------HHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--------------------hHHHHHHHH
Q 002761 184 VRNKYLEDAN-----------KVFLRGAKGGLRATDEIYDLMIAEDCKAGD--------------------HSNALEIAY 232 (883)
Q Consensus 184 ~k~G~~eeA~-----------~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~--------------------~eeA~~lf~ 232 (883)
--.|.+++|. ++=++..+ ...|-.+-+.|...|+ ++.|.+.|.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e------~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLE------SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhh------hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 3344444443 22222221 1233334444433331 223333332
Q ss_pred H----HHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHchh--CCCCC-CCCHHHHHHHHHHHHHcCCcccHHHHHH
Q 002761 233 E----MEAAGRM-ATTFHFNHLLSCQATCGIPEVAFATFENMEY--GEDYM-KPDTETYNCVIQAYTRAESYDRVQDVAE 304 (883)
Q Consensus 233 ~----M~~~G~~-Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~--g~~gi-~pd~~tyn~LI~ay~~~G~~d~~~eAl~ 304 (883)
+ |.+.|-. .--..|..|-+.|--.|+++.|....+.=.. .+-|- ..-...+..|-+++.-.|++ +.|.+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f---e~A~e 256 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF---ELAIE 256 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc---HhHHH
Confidence 2 1111100 0112455555556667888888765543211 01111 11234566777888888854 47777
Q ss_pred HHHHhHhc---cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCccccccCCCCcHHHHHHHHHHHcC
Q 002761 305 LLGMMVED---HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN----YEGGTKVLHNEGNFGDPLSLYLRALCREG 377 (883)
Q Consensus 305 lf~~M~~~---~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~----~~~~~~~~~~~~~~~dtYn~LI~~y~~~G 377 (883)
.|+.-... -..-.....+.-+|-+.|.-...+++|+.+|..-.. .+...... ..|=+|-.+|...|
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~-------RacwSLgna~~alg 329 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL-------RACWSLGNAFNALG 329 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHhhh
Confidence 77654320 011223345666788888888899999998865432 11111000 13557889999999
Q ss_pred CHHHHHHHHHHHhhCCC
Q 002761 378 RIIELLEALEAMAKDNQ 394 (883)
Q Consensus 378 ~~~eA~~lf~~M~~~Gi 394 (883)
.-++|+.+.+.-++...
T Consensus 330 ~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 330 EHRKALYFAELHLRSSL 346 (639)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999998887765544
No 342
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=31.04 E-value=60 Score=23.25 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHCCCHHHH
Q 002761 175 AWLILVEELVRNKYLEDA 192 (883)
Q Consensus 175 tyn~LI~~y~k~G~~eeA 192 (883)
+|+.|-..|...|+.++|
T Consensus 15 a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 15 AYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHCcCHHhh
Confidence 555555555555555554
No 343
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=31.02 E-value=6.7e+02 Score=26.67 Aligned_cols=179 Identities=16% Similarity=0.073 Sum_probs=108.6
Q ss_pred cCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCChHHHHH
Q 002761 152 KGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE--DCKAGDHSNALE 229 (883)
Q Consensus 152 ~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a--~~k~g~~eeA~~ 229 (883)
.|-+..|+-=|.+..........+||.|---+...|+++.|.+.|+...+-. |. .-|..+=+| +.-.|++.-|.+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~-y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc-chHHHhccceeeeecCchHhhHH
Confidence 3555556656666555433333389999999999999999999999988743 22 233333333 234688888877
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Q 002761 230 IAYEMEAA-GRMATTFHFNHLLSCQATCGIPEVAFA-TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307 (883)
Q Consensus 230 lf~~M~~~-G~~Pd~~tyn~LI~~y~k~G~~e~A~~-lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~ 307 (883)
=|...-+. .-.|=...|--|+. ..-+..+|.. +.++.. ..|..-|.+-|-.|.-.. + .++ .+|.
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~------~~d~e~WG~~iV~~yLgk-i--S~e--~l~~ 220 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE------KSDKEQWGWNIVEFYLGK-I--SEE--TLME 220 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH------hccHhhhhHHHHHHHHhh-c--cHH--HHHH
Confidence 66555433 33444445544433 2234445543 444444 567677777777766543 2 122 3566
Q ss_pred HhHhccCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002761 308 MMVEDHKRLQPNV-------KTYALLVECFTKYCAVTEAIRHFRALQNYE 350 (883)
Q Consensus 308 ~M~~~~~gi~Pd~-------~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~ 350 (883)
.... +-+-+. .||--|-.-+...|.+++|..+|+......
T Consensus 221 ~~~a---~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 221 RLKA---DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHh---hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 6654 333222 355556667778999999999999887644
No 344
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=30.91 E-value=91 Score=21.58 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=11.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q 002761 176 WLILVEELVRNKYLEDANKVFLRGA 200 (883)
Q Consensus 176 yn~LI~~y~k~G~~eeA~~lf~~M~ 200 (883)
|..+-..|...|++++|...|++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 4444444444555555555544443
No 345
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=30.51 E-value=44 Score=33.01 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHhcCCcHHHHHHHhhhcccccccCCccHHHHHHHhhccccch
Q 002761 770 WEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELD 843 (883)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (883)
-|.+-|-++...++++||.|.+..+. +.+ -+.....+++..-+ ..+-....|.++|.+|.+.|...
T Consensus 50 EE~~Ha~~laeri~~lGg~p~~~~i~-----~~~--~~~~~~e~l~~~l~-~E~~~~~~~~e~i~~A~~~~D~~ 115 (157)
T TIGR00754 50 DEMKHADEIIERILFLEGLPNLQDLG-----KLR--IGETVREMLEADLA-LELDVLNRLKEAIAYAEEVRDYV 115 (157)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCcCC-----CCC--CCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCHH
Confidence 46688999999999999999987532 111 11233344443332 23456778999999998777543
No 346
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.49 E-value=2.1e+02 Score=34.77 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=42.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH----HchhCCCCCCCCHHHHHHH
Q 002761 213 LMIAEDCKAGDHSNALEIAYEMEAA--GRMATTFHFNHLLSCQATCGIPEVAFATFE----NMEYGEDYMKPDTETYNCV 286 (883)
Q Consensus 213 ~LI~a~~k~g~~eeA~~lf~~M~~~--G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~----~M~~g~~gi~pd~~tyn~L 286 (883)
+|+.+|..+|++..+.++++..... |-+.=...||..|+...+.|.++.- .+.. .++ ...+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~-~~~~~~~~~lq--~a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELT-DVLSNAKELLQ--QARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHH-HHHHHHHHHHH--HhhcCCcchHHHHH
Confidence 6777777777777777777776543 3333345566666777777765432 1222 122 33455555666555
Q ss_pred HHHH
Q 002761 287 IQAY 290 (883)
Q Consensus 287 I~ay 290 (883)
+.+-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 5443
No 347
>PRK09687 putative lyase; Provisional
Probab=30.24 E-value=7.5e+02 Score=26.97 Aligned_cols=123 Identities=14% Similarity=0.040 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHH
Q 002761 242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321 (883)
Q Consensus 242 d~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~ 321 (883)
+..+--..+.++++.|+- .|...+-.+.. .+|...-...+.++.+.+. ....+...+..+..+ +|..
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~-----d~~~~VR~~A~~aLg~~~~--~~~~~~~~L~~~L~D-----~~~~ 207 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLK-----DPNGDVRNWAAFALNSNKY--DNPDIREAFVAMLQD-----KNEE 207 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhc-----CCCHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhcC-----CChH
Confidence 444555566666666653 34444443331 4444455555555555431 123455555555542 4556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 002761 322 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392 (883)
Q Consensus 322 Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~~~ 392 (883)
+-...+.++.+.|.. .|...+-...+.+. ..-..+.+++..|.. +|+..+.+|...
T Consensus 208 VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-------------~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 208 IRIEAIIGLALRKDK-RVLSVLIKELKKGT-------------VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred HHHHHHHHHHccCCh-hHHHHHHHHHcCCc-------------hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 666667777777763 44444444433221 123567777777774 577777777654
No 348
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=30.16 E-value=23 Score=39.65 Aligned_cols=11 Identities=36% Similarity=0.815 Sum_probs=6.2
Q ss_pred HHHHHHHHhcc
Q 002761 726 FEAFKEMRKRK 736 (883)
Q Consensus 726 ~~~~~~~~~~~ 736 (883)
|+++++||..+
T Consensus 195 F~kI~~lr~~~ 205 (324)
T PF05285_consen 195 FAKIRELRAKK 205 (324)
T ss_pred HHHHHHHHHHH
Confidence 55566655544
No 349
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=29.34 E-value=32 Score=38.58 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=9.3
Q ss_pred hhcccccccccchhhh
Q 002761 629 DESELSDVLDDDVTDV 644 (883)
Q Consensus 629 ~~~~~~~~~~~~~~~~ 644 (883)
+..+..|+.|+|+++|
T Consensus 53 ~~~e~eDe~DsDfs~d 68 (390)
T KOG2897|consen 53 EESEEEDEVDSDFSID 68 (390)
T ss_pred hhhhhccccccccchh
Confidence 5555556666665555
No 350
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=29.28 E-value=88 Score=30.21 Aligned_cols=67 Identities=21% Similarity=0.177 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCcCccchHHHHHH--HHhcC--CcHHHHHHHhhhcccccccCCccHHHHHHHh
Q 002761 769 EWEVELAIQIMLKVIELGGTPTIGDCAVIIRA--AIRAP--LPSAFLKILQKTHSLGYVFGSPLYDEIISLC 836 (883)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (883)
..|.+-|-.+...+..|||.|+.+-..++-.+ .+..| -+.....+|+..-. .++-....|.+++.+|
T Consensus 49 ~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~e~~~i~~~~~~~~~a 119 (148)
T cd01052 49 EEELNHAELLAERIYELGGTPPRDPKDWYEISGCKCGYLPPDPPDVKGILKVNLK-AERCAIKVYKELCDMT 119 (148)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhcccccCCCCCCccHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 35777788888999999999999654443333 12221 11122233332211 2344567788888887
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=28.71 E-value=3.2e+02 Score=28.98 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=36.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Q 002761 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA--GRMATTFHFNHLLSCQ 253 (883)
Q Consensus 178 ~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~--G~~Pd~~tyn~LI~~y 253 (883)
.-++.+.+.+.+.+|+.+.+.=.+.. +.|.-+-..++.-||-.|++++|..-++-.-.. ...+-..+|..+|.+-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 33445555556666665555544422 122234445556666666666665544433321 1223345555555543
No 352
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.15 E-value=18 Score=40.59 Aligned_cols=18 Identities=22% Similarity=0.267 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 002761 556 NVLYQRVQKARRINRSRG 573 (883)
Q Consensus 556 ~~l~~~l~~~~~~~~~~G 573 (883)
+.+...|+.+.++-...|
T Consensus 183 ~ele~~l~d~~~qEel~~ 200 (514)
T KOG3130|consen 183 KELEARLEDLERQEELLG 200 (514)
T ss_pred HHHHHHHHHHhhcccccc
Confidence 336667777777776666
No 353
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.12 E-value=6.8e+02 Score=25.76 Aligned_cols=126 Identities=14% Similarity=0.107 Sum_probs=64.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH--HHHhc
Q 002761 77 MQHARNRDAPRVNDVIYDMIAAGLSPGP-RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE-TLIALAR--LFGSK 152 (883)
Q Consensus 77 ~~~~k~G~~~~A~~lf~~M~~~G~~pd~-~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~-ty~~LI~--a~~~~ 152 (883)
+.+++.+..++|+.-|.++.+.|..--+ -.--.+-...++.|+...|...|++.-...-.|-.. -..-|=. .+...
T Consensus 66 L~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 66 LKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc
Confidence 3466677777777777777766532111 111122233455677777777777665443333322 1111111 22344
Q ss_pred CCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHCCCHHHHHHHHHHHHhC
Q 002761 153 GLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKG 202 (883)
Q Consensus 153 g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~ 202 (883)
|.++....-.+-+-..+-+..+ .--+|--+-.+.|++.+|...|..+...
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 5555555555544443333323 3345555555666666676666666543
No 354
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=28.04 E-value=1e+02 Score=27.05 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=35.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHH
Q 002761 332 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387 (883)
Q Consensus 332 k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~ 387 (883)
+...-++|+..+....+.-..+.-.+. +..+|+.+|+..|++.+++++-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~------~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFR------VLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778888888887754333322111 67899999999999999887643
No 355
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=27.90 E-value=3.2e+02 Score=30.73 Aligned_cols=84 Identities=18% Similarity=0.097 Sum_probs=53.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHCC----
Q 002761 113 AYTLNGDHEGAMHSLKRELSAGVRP-LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNK---- 187 (883)
Q Consensus 113 a~~~~g~~~~A~~lf~~M~~~Gi~P-d~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~~y~k~G---- 187 (883)
-|.+.|.+++|+..|..-.. +.| |.++|..-..+|.+...+..|..=....+..+ ...+.+|++.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-------~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-------KLYVKAYSRRMQARE 176 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-------HHHHHHHHHHHHHHH
Confidence 56788999999999876443 456 88888888889988888877666555444332 13345555544
Q ss_pred ---CHHHHHHHHHHHHhCCCCCC
Q 002761 188 ---YLEDANKVFLRGAKGGLRAT 207 (883)
Q Consensus 188 ---~~eeA~~lf~~M~~~gi~pd 207 (883)
...+|.+=++.... +.|+
T Consensus 177 ~Lg~~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHhhHHHHHHhHHHHHh--hCcc
Confidence 44444444444433 4455
No 356
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=27.88 E-value=59 Score=31.54 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=27.0
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCCcceehhhhHHHHHHHH
Q 002761 373 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414 (883)
Q Consensus 373 y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~~~y~~Ll~~~ 414 (883)
+-..|.-.+|..+|.+|+..|- ||+. |+.|+.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~--pPdd------W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGN--PPDD------WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCC--CCcc------HHHHHHHh
Confidence 4456777889999999999997 6665 88888765
No 357
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=27.69 E-value=1.5e+02 Score=20.44 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002761 106 SFHGLVVAYTLNGDHEGAMHSLKRELS 132 (883)
Q Consensus 106 tyn~LI~a~~~~g~~~~A~~lf~~M~~ 132 (883)
+|..+-..|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666665543
No 358
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=27.61 E-value=1.8e+02 Score=22.79 Aligned_cols=32 Identities=22% Similarity=0.134 Sum_probs=17.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002761 116 LNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147 (883)
Q Consensus 116 ~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~ 147 (883)
+.|.+.++..++++|...|+.-+...|..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555555555666666665555555555443
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=27.61 E-value=3.2e+02 Score=29.00 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002761 109 GLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAA 164 (883)
Q Consensus 109 ~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~ 164 (883)
.-|+.+.+.+.+.+|+.+.++-.+.. +-|.-+-..++..+|-.|++++|..-++-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 33444445555555555544433321 11333344455555555555555444433
No 360
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=27.58 E-value=4.3e+02 Score=24.57 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=22.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 002761 114 YTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169 (883)
Q Consensus 114 ~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g 169 (883)
+...|++++|+.+.+.+ +.||...|-+|-. .+.|..+....-+.+|...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34445555555544433 3455555444432 23444444444444444444
No 361
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=27.52 E-value=1.6e+02 Score=33.11 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=46.6
Q ss_pred HHHHcCCcccHHHHHHHHHHhHhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHH
Q 002761 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367 (883)
Q Consensus 289 ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn 367 (883)
-|.+.| +.++|+..|..-.. +.| |.++|..-..+|.+...+..|..=........ .
T Consensus 106 ~yFKQg---Ky~EAIDCYs~~ia----~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd----------------~ 162 (536)
T KOG4648|consen 106 TYFKQG---KYEEAIDCYSTAIA----VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD----------------K 162 (536)
T ss_pred hhhhcc---chhHHHHHhhhhhc----cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh----------------H
Confidence 467777 44477777776543 556 77777777777777777766665555444211 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 002761 368 LYLRALCREGRIIELLEALEAM 389 (883)
Q Consensus 368 ~LI~~y~~~G~~~eA~~lf~~M 389 (883)
..+.+|.|.|.-.+++..+.+.
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 4466666665555444444443
No 362
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=27.36 E-value=1.1e+02 Score=29.59 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCcCccchHHHHHHHHhcCCcHHHHHHHhhhcccccccCCccHHHHHHHhhccccchhHHHHhhhccccCc
Q 002761 778 IMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGI 857 (883)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (883)
+-.-.-.|.++.+|.|=+-+=|..+ | .+.-.++..-.=|-..--+..--++--|+|.|++|.|+.|..-.=..|.
T Consensus 5 L~~D~~~Lk~iqs~e~K~~~Kr~lL----P-~Y~p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 5 LAQDRRRLKQIQSIERKAEYKRELL----P-KYLPWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHH----H-hHHHHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 3344557899999998776666632 2 3333333322222222345555566677899999999999888888899
Q ss_pred cCCch
Q 002761 858 AVPDQ 862 (883)
Q Consensus 858 ~~~~~ 862 (883)
..|+.
T Consensus 80 ~~P~~ 84 (132)
T PF05944_consen 80 PMPDR 84 (132)
T ss_pred Ccccc
Confidence 88864
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=26.93 E-value=1.5e+02 Score=26.05 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=22.2
Q ss_pred HCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHH
Q 002761 185 RNKYLEDANKVFLRGAKGGLRATD--EIYDLMIAEDCKAGDHSNALE 229 (883)
Q Consensus 185 k~G~~eeA~~lf~~M~~~gi~pd~--~tyn~LI~a~~k~g~~eeA~~ 229 (883)
...+-++|+..|....++-..|.. .++..|+.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555443222221 455555666666666555544
No 364
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=26.87 E-value=4.2e+02 Score=29.14 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCc
Q 002761 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 364 (883)
Q Consensus 285 ~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~d 364 (883)
.=|.+++..+ ++.+++...-+--..-..+.|.+.-...+ -|+|.+.+..+.++-....+....-...
T Consensus 88 vGIQALAEmn---rWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp-------- 154 (309)
T PF07163_consen 88 VGIQALAEMN---RWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQSLP-------- 154 (309)
T ss_pred hhHHHHHHHh---hHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccCCch--------
Confidence 3477888888 88887765554433112355555444444 4889999999998888877644332222
Q ss_pred HHHHHHHHHHH-----cCCHHHHHHHH
Q 002761 365 PLSLYLRALCR-----EGRIIELLEAL 386 (883)
Q Consensus 365 tYn~LI~~y~~-----~G~~~eA~~lf 386 (883)
-|.+++..|.. .|.+++|.++.
T Consensus 155 ~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 155 EYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 26666655554 69999999888
No 365
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.64 E-value=1.1e+03 Score=27.57 Aligned_cols=151 Identities=16% Similarity=0.091 Sum_probs=91.2
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHchhCCCCCCCCHHHHHH---------
Q 002761 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA--TCGIPEVAFATFENMEYGEDYMKPDTETYNC--------- 285 (883)
Q Consensus 217 a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~--k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~--------- 285 (883)
++.-.|++++|..+--...+.. .+..+...+++.| -.++.+.|..-|++-.. +.|+...--+
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~----ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALR----LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhc----cChhhhhHHhHhhhHHHHH
Confidence 3455778888877766655542 2234444555433 35677778777776551 2343322111
Q ss_pred ----HHHHHHHcCCcccHHHHHHHHHHhHhcc-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccC
Q 002761 286 ----VIQAYTRAESYDRVQDVAELLGMMVEDH-KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG 360 (883)
Q Consensus 286 ----LI~ay~~~G~~d~~~eAl~lf~~M~~~~-~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~ 360 (883)
=-+-..++| ...+|.+.|.+-+... ...+|+...|...-.+..+.|+.++|+.-.+...+..
T Consensus 251 ~~k~~gN~~fk~G---~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---------- 317 (486)
T KOG0550|consen 251 VKKERGNDAFKNG---NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---------- 317 (486)
T ss_pred HHHhhhhhHhhcc---chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC----------
Confidence 122356778 5558888998876310 2445556667666677889999999999887776522
Q ss_pred CCCcHHHHHHHHHHHc-------CCHHHHHHHHHHHhhCC
Q 002761 361 NFGDPLSLYLRALCRE-------GRIIELLEALEAMAKDN 393 (883)
Q Consensus 361 ~~~dtYn~LI~~y~~~-------G~~~eA~~lf~~M~~~G 393 (883)
.+.|.+|.+. +.|++|.+-|++..+..
T Consensus 318 ------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 318 ------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2344444443 56777777777765544
No 366
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=26.47 E-value=22 Score=44.24 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=0.0
Q ss_pred ccchhhhhhhhc
Q 002761 638 DDDVTDVEYVAK 649 (883)
Q Consensus 638 ~~~~~~~~~~~~ 649 (883)
|+++|++|||.|
T Consensus 676 d~e~Es~EDEdD 687 (787)
T PF03115_consen 676 DSEDESDEDEDD 687 (787)
T ss_dssp ------------
T ss_pred CCCCCccccccc
Confidence 333444344433
No 367
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.12 E-value=1.5e+03 Score=29.09 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002761 106 SFHGLVVAYTLNGDHEGAMHSLKRELS 132 (883)
Q Consensus 106 tyn~LI~a~~~~g~~~~A~~lf~~M~~ 132 (883)
-|..|+-.|...|..++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488899999999999999999988754
No 368
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=26.03 E-value=5.2e+02 Score=24.05 Aligned_cols=86 Identities=19% Similarity=0.123 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHHHHHcCCcccHHHHH
Q 002761 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303 (883)
Q Consensus 224 ~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl 303 (883)
.++|..+-+.+...+-. ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|-. .+.| ....+.
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~------~pdlepw~ALce--~rlG---l~s~l~ 88 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC------YPDLEPWLALCE--WRLG---LGSALE 88 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC------CchHHHHHHHHH--Hhhc---cHHHHH
Confidence 45666666665554422 22222233445667888888888877766 888888877754 3455 333444
Q ss_pred HHHHHhHhccCCCCCCHHHHH
Q 002761 304 ELLGMMVEDHKRLQPNVKTYA 324 (883)
Q Consensus 304 ~lf~~M~~~~~gi~Pd~~Ty~ 324 (883)
.-+.+|-. .=.|-..+|.
T Consensus 89 ~rl~rla~---sg~p~lq~Fa 106 (115)
T TIGR02508 89 SRLNRLAA---SGDPRLQTFV 106 (115)
T ss_pred HHHHHHHh---CCCHHHHHHH
Confidence 45555554 2245555553
No 369
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=25.95 E-value=1.1e+03 Score=27.69 Aligned_cols=282 Identities=11% Similarity=0.085 Sum_probs=144.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--Hh
Q 002761 79 HARNRDAPRVNDVIYDMIAAGL-SPG----PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF--GS 151 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~-~pd----~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~--~~ 151 (883)
+-+.+++.+|..+|.++.+.-- .|. .+.-+-+|++|..++ .+.....+....+. .| ...|-.|..++ -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 5577899999999999876431 121 344677888888764 44444444444332 22 23444454443 46
Q ss_pred cCCHHHHHHHHHHHHHc--CCCh------------hH-HHHHHHHHHHHCCCHHHHHHHHHHHHhCCC----CCCHHHHH
Q 002761 152 KGLATKGLEILAAMEKI--NYDI------------RQ-AWLILVEELVRNKYLEDANKVFLRGAKGGL----RATDEIYD 212 (883)
Q Consensus 152 ~g~~~~A~~l~~~m~~~--g~~p------------dv-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi----~pd~~tyn 212 (883)
.+.+..|.+.+..-... +..+ +. --+..++.+...|++.+++.++++|...=+ .-+..+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 77888888888776654 3222 11 225666777778888888887777765333 35667777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCHHHHHHHHHH
Q 002761 213 LMIAEDCKAGDHSNALEIAYEMEAA---GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289 (883)
Q Consensus 213 ~LI~a~~k~g~~eeA~~lf~~M~~~---G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~a 289 (883)
.++-.+++. .|-++.+. .+-|+ |--+|-.|-+.= ..++.-. -..+.|-..-..+++..
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki------~~~d~~~--Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKI------HAFDQRP--YEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHH------HHHhhch--HHhhCcHHHHHHHHHHH
Confidence 755555542 23333221 12222 333444443321 1111111 11223333333333333
Q ss_pred HHHcCCcccHHHHHHHHHHhHhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHH
Q 002761 290 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVK-TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 368 (883)
Q Consensus 290 y~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~-Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~ 368 (883)
..-.. .++..--++++..-.. .-+.|+-. ....|+..+.. +.+++.++.+.+....+.+- ...-.+++..
T Consensus 233 lfi~p-~e~l~~~mq~l~~We~--~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~L----ke~li~~F~~ 303 (549)
T PF07079_consen 233 LFIVP-KERLPPLMQILENWEN--FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKL----KEELIDRFGN 303 (549)
T ss_pred HHhCC-HhhccHHHHHHHHHHh--hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHH----HHHHHHHHHH
Confidence 33222 0011112222222222 34566643 33455555554 55666666655543221110 0111226778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC
Q 002761 369 YLRALCREGRIIELLEALEAMAKD 392 (883)
Q Consensus 369 LI~~y~~~G~~~eA~~lf~~M~~~ 392 (883)
++....+.++..+|-+.+.-++..
T Consensus 304 ~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 304 LLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhc
Confidence 888888888888888888777543
No 370
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=25.38 E-value=1.3e+02 Score=20.50 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=11.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Q 002761 177 LILVEELVRNKYLEDANKVFLRGA 200 (883)
Q Consensus 177 n~LI~~y~k~G~~eeA~~lf~~M~ 200 (883)
..+-..|.+.|++++|.+.|++..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444455555555555555443
No 371
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.88 E-value=7.7e+02 Score=25.35 Aligned_cols=130 Identities=14% Similarity=0.043 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH--HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHH
Q 002761 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE-IYDLMIA 216 (883)
Q Consensus 140 ~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv--tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~-tyn~LI~ 216 (883)
.+|...++. ++.+..++|+.-|..+.+.|...-. .---+-......|+...|...|++.-...-.|-.. -..-|=.
T Consensus 60 d~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 344444443 4455666777777777766543221 22223334556777777777777766543333332 1222222
Q ss_pred H--HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002761 217 E--DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270 (883)
Q Consensus 217 a--~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~ 270 (883)
+ +..+|-++......+-+-..|-..-...-.+|--+--|.|++..|...|..+.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 2 33466666666666555444433333344556566667788888888887776
No 372
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=24.76 E-value=3.9e+02 Score=24.00 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=18.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002761 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262 (883)
Q Consensus 220 k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A 262 (883)
+.|+.+.|.+++..+. +|- -.|..+++++-..|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 3355555555555555 332 1445555555555544433
No 373
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=24.66 E-value=1.2e+03 Score=27.51 Aligned_cols=195 Identities=15% Similarity=0.090 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------
Q 002761 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLR----ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATT------- 243 (883)
Q Consensus 175 tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~----pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~------- 243 (883)
+...|+..+.+ +.+++..+-+.+....+. .=..+|..++....+.++..+|.+.+.-+... .|+.
T Consensus 263 Vi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kll 338 (549)
T PF07079_consen 263 VIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLL 338 (549)
T ss_pred HHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhh
Confidence 33444444444 445555544444332111 11257888888888888888888877766543 2221
Q ss_pred --------------HHHHHH------------------------HHH---HHHcCC-HHHHHHHHHHchhCCCCCCC-CH
Q 002761 244 --------------FHFNHL------------------------LSC---QATCGI-PEVAFATFENMEYGEDYMKP-DT 280 (883)
Q Consensus 244 --------------~tyn~L------------------------I~~---y~k~G~-~e~A~~lf~~M~~g~~gi~p-d~ 280 (883)
..|+.+ +.+ |-+.|. -++|.++++.+.+ +.+ |.
T Consensus 339 ls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~----ft~yD~ 414 (549)
T PF07079_consen 339 LSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ----FTNYDI 414 (549)
T ss_pred cCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH----hccccH
Confidence 111111 100 223343 5667777776652 222 33
Q ss_pred HHHHHHH----HHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHH----HHHHHH--HHHHcCCHHHHHHHHHHHHhCC
Q 002761 281 ETYNCVI----QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT----YALLVE--CFTKYCAVTEAIRHFRALQNYE 350 (883)
Q Consensus 281 ~tyn~LI----~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~T----y~~LI~--a~~k~G~~eeA~~lf~~M~~~~ 350 (883)
.+-|.+. .+|.++=......+-+.+-+-+.+ -|+.|-.+. -|.|-+ -+...|++.++...-.-+.+
T Consensus 415 ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e--~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~-- 490 (549)
T PF07079_consen 415 ECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITE--VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK-- 490 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--
Confidence 3333322 223222111112222233222333 577775433 333333 24456888877765544444
Q ss_pred CCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002761 351 GGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389 (883)
Q Consensus 351 ~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M 389 (883)
+.|+ +.+|..+--.+....++++|..+|..+
T Consensus 491 iaPS--------~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 491 IAPS--------PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred hCCc--------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 2222 236777777778889999999999988
No 374
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=24.47 E-value=60 Score=34.48 Aligned_cols=89 Identities=22% Similarity=0.365 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHhcCCcHHHHHHHhhhcccccccCCccHHHHHHHhhccccchhHHH
Q 002761 768 QEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVA 847 (883)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (883)
..+|..|+. +-.-+-.|.++++|.|=+-+=|. + .|-=-.++.=...+++ || .-+..--++--++|.|++|.|+.
T Consensus 31 ~~ye~~l~~-L~~D~~~Lk~i~s~~~K~~~Kre-l-LP~Y~p~V~g~L~~g~-~~--qd~Vl~~~mvW~~D~Gd~~~AL~ 104 (230)
T PHA02537 31 TAYELMLAQ-LAADRRALKGIQSIERKAELKRD-L-LPKYLPWVEGVLAAGA-GY--QDDVLMTVMVWRFDIGDFDGALE 104 (230)
T ss_pred cHHHHHHHH-HHHHHHHHhhcccHHHHHHHHHH-H-CcchHHHHHHHHHcCC-CC--CCCeeeEeeeeeeeccCHHHHHH
Confidence 567776654 44445599999999997777777 3 2322233333333333 43 44666667777899999999999
Q ss_pred HhhhccccCccCCch
Q 002761 848 IVADMETTGIAVPDQ 862 (883)
Q Consensus 848 ~~~~~~~~~~~~~~~ 862 (883)
|..-.=+.|...|+.
T Consensus 105 ia~yAI~~~l~~Pd~ 119 (230)
T PHA02537 105 IAEYALEHGLTMPDQ 119 (230)
T ss_pred HHHHHHHcCCCCCcc
Confidence 988888889999975
No 375
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=24.40 E-value=25 Score=41.14 Aligned_cols=10 Identities=40% Similarity=0.544 Sum_probs=4.5
Q ss_pred hcccccccCC
Q 002761 817 THSLGYVFGS 826 (883)
Q Consensus 817 ~~~~~~~~~~ 826 (883)
..|.||+|--
T Consensus 493 ~~s~g~aF~~ 502 (678)
T KOG0127|consen 493 NYSEGYAFVG 502 (678)
T ss_pred cccccccccC
Confidence 3345555433
No 376
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=24.36 E-value=1.9e+02 Score=28.54 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHHhhCCCCChhhHHHHHHHH----------HHHHHHHHhcCCCCCCCCCcchhhchhHHHHHHHhhhhc
Q 002761 532 ASKMVVSELKEELDAQGLPTDGTRNVLYQRV----------QKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKL 601 (883)
Q Consensus 532 ~S~~ev~~l~~ef~~~g~~~~~~~~~l~~~l----------~~~~~~~~~~G~~lyvp~~~~~~~~vdee~~~~~~~~~~ 601 (883)
.+..++.+++-+|..+|.++.+.--+|-+.. .++.+.+++.| ..|++-+.+...-+.+..+-.|++.
T Consensus 28 ~~~eeve~~I~~lakkG~~pSqIG~~LRD~~gip~Vk~vtG~ki~~iLk~~g---l~p~iPEDL~~L~~ri~~L~~HL~~ 104 (151)
T PRK08561 28 YSPEEIEELVVELAKQGYSPSMIGIILRDQYGIPDVKLITGKKITEILEENG---LAPEIPEDLRNLIKKAVNLRKHLEE 104 (151)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHhhhhHhhccCCCceeeeccchHHHHHHHcC---CCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 4556888888888888876655555443332 47889999999 8888888888888888888888888
Q ss_pred cccc
Q 002761 602 EEGN 605 (883)
Q Consensus 602 ~~~~ 605 (883)
|..+
T Consensus 105 nkKD 108 (151)
T PRK08561 105 NPKD 108 (151)
T ss_pred CCCc
Confidence 7654
No 377
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.30 E-value=30 Score=42.75 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=4.1
Q ss_pred hHHHHHHHH
Q 002761 554 TRNVLYQRV 562 (883)
Q Consensus 554 ~~~~l~~~l 562 (883)
+-+++|.++
T Consensus 1312 tG~VmYa~~ 1320 (1516)
T KOG1832|consen 1312 TGDVMYAML 1320 (1516)
T ss_pred Cccchhhhh
Confidence 334455544
No 378
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=24.16 E-value=7.2e+02 Score=28.57 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=25.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHH
Q 002761 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTL------NGDHEGAMHSLKR 129 (883)
Q Consensus 79 ~~k~G~~~~A~~lf~~M~~~G~~pd~~tyn~LI~a~~~------~g~~~~A~~lf~~ 129 (883)
+.+.+++..|.++|+++..+.++|....+-.++..+|+ .-++++|.+.|+.
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 44556666666666666665544444332222222222 2345555555553
No 379
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=24.05 E-value=2.7e+02 Score=28.23 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=39.6
Q ss_pred HcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002761 292 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350 (883)
Q Consensus 292 ~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~~~~ 350 (883)
...+.+......+..++.. ...|+..+|..++.++...|+.++|.++..++....
T Consensus 120 ~~~~~~~l~~~~~~a~~~l----~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLL----RRRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCCHHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4443333344445555554 367999999999999999999999999998887643
No 380
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=24.01 E-value=1.8e+03 Score=29.27 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHH----HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCH
Q 002761 205 RATDEIYDLMIAED----CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280 (883)
Q Consensus 205 ~pd~~tyn~LI~a~----~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~ 280 (883)
.|+...+..+..+| .....+++|.-.|+..-+ ..--+.+|-.+|+|.+|..+-.+|.. ..|.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~-----~~de 997 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE-----GKDE 997 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC-----CHHH
Confidence 46665555555444 456777777766664432 12347788889999999999888872 2333
Q ss_pred HH--HHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002761 281 ET--YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347 (883)
Q Consensus 281 ~t--yn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~k~G~~eeA~~lf~~M~ 347 (883)
.. --.|+.-+...+ +.-+|-++..+-..+ | .-.+.-||++..+++|.++-..-.
T Consensus 998 ~~~~a~~L~s~L~e~~---kh~eAa~il~e~~sd-----~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQR---KHYEAAKILLEYLSD-----P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHHHcc---cchhHHHHHHHHhcC-----H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 33 256778888888 444776666665431 2 223455677778888888765544
No 381
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=23.96 E-value=35 Score=43.28 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=10.2
Q ss_pred CCChHHHHHHHHhcccccchhhHHHh
Q 002761 722 PEDPFEAFKEMRKRKVFDVSDMYTIA 747 (883)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (883)
|.+.. -|.++-. + ++.++..||-
T Consensus 425 P~s~e-el~~lL~-~-~~~~~~~~iI 447 (840)
T PF04147_consen 425 PSSHE-ELLELLD-G-YSPEDQPTII 447 (840)
T ss_pred CCCHH-HHHHHHh-c-CCHHHHhHHH
Confidence 45543 3444443 2 2455555443
No 382
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=23.74 E-value=1.1e+03 Score=29.76 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=43.2
Q ss_pred HHHHHHHHhhchHHHHHHHHHHhcCCCccccC----CChhHHHHHHHHHHhh-hcCCCccccCcccchHHHHHHHHHHHh
Q 002761 471 TSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGD----VSESDYVRVEERLKKL-IKGPEQHVLKPKAASKMVVSELKEELD 545 (883)
Q Consensus 471 ~~l~~~c~~g~~~~A~~Ll~eM~~~G~~~lls----~~~~~~~~vi~~l~k~-gk~~~~~v~K~~g~S~~ev~~l~~ef~ 545 (883)
..++-+|..-+...+.++-.+-...|-.+... +...|. +.|.+. |+ -.|-...++..+..|+
T Consensus 575 RFFKyLCIAaKV~~~V~laReaik~~KcVVIGLQSTGEsrTl----e~Le~~~G~---------Ln~FVStAk~v~~s~i 641 (1300)
T KOG1513|consen 575 RFFKYLCIAAKVNHLVELAREAIKRGKCVVIGLQSTGESRTL----EVLEENDGE---------LNCFVSTAKGVFQSLI 641 (1300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCceEEEeeccccchhHH----HHHHhcCCc---------hhHHHHHHHHHHHHHH
Confidence 35666788888888888887776677665332 333333 333332 11 1133446677778888
Q ss_pred hCCCCChhhHH
Q 002761 546 AQGLPTDGTRN 556 (883)
Q Consensus 546 ~~g~~~~~~~~ 556 (883)
.+-+|.|....
T Consensus 642 ekHFPa~~r~~ 652 (1300)
T KOG1513|consen 642 EKHFPAPKRKS 652 (1300)
T ss_pred HHhCCCccccc
Confidence 88777775444
No 383
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=23.70 E-value=1e+03 Score=26.42 Aligned_cols=102 Identities=16% Similarity=0.215 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHhHhccCCCCCCH-------------HHH----HHHHHHHHHcCCHH
Q 002761 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV-------------KTY----ALLVECFTKYCAVT 337 (883)
Q Consensus 275 gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~-------------~Ty----~~LI~a~~k~G~~e 337 (883)
+.+-|+.-|-+.+...-... +-.+++-++...... +.-|+. .+| +.+-..|..+|.+.
T Consensus 222 ~~k~Dv~e~es~~rqi~~in--ltide~kelv~~ykg---dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~n 296 (361)
T COG3947 222 LPKYDVQEYESLARQIEAIN--LTIDELKELVGQYKG---DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPN 296 (361)
T ss_pred CccccHHHHHHHhhhhhccc--cCHHHHHHHHHHhcC---CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 44557777777766655444 245566666555532 333332 234 34446899999999
Q ss_pred HHHHHHHHHHhCCCCCccccccCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002761 338 EAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390 (883)
Q Consensus 338 eA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~LI~~y~~~G~~~eA~~lf~~M~ 390 (883)
+|.++.+.....+.-.. ..|-.|+..|...|+--.|..-+++|.
T Consensus 297 eAi~l~qr~ltldpL~e---------~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 297 EAIQLHQRALTLDPLSE---------QDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHhhcChhhh---------HHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 99999998876432221 146789999999999888888888874
No 384
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=23.67 E-value=1.2e+03 Score=27.06 Aligned_cols=288 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHH--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002761 142 LIALARLFGSKG--LATKGLEILAAMEKINYDIRQ-AWLILVEELVR--NKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216 (883)
Q Consensus 142 y~~LI~a~~~~g--~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k--~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~ 216 (883)
|.+|-.++...| +-..|+++-.+..+. +..|. ..-.|+.+-.. .|+.++|.+-|+.|.. |..|--.=+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Q ss_pred HHH----HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCCCH--HHHHHHHHHH
Q 002761 217 EDC----KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT--ETYNCVIQAY 290 (883)
Q Consensus 217 a~~----k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~G~~e~A~~lf~~M~~g~~gi~pd~--~tyn~LI~ay 290 (883)
|+. +.|..+.|...-+..-..--. -.-.+.+++...|..|+++.|.++.+.-.. ..-+.+|+ ..-..|+.+-
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~-~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRA-AKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHH-HHhhchhhHHHHHHHHHHHH
Q ss_pred HHcCCcccHHHHHHHHHHhHhccCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCccccccCCCCcHHHHH
Q 002761 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE-CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 369 (883)
Q Consensus 291 ~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~-a~~k~G~~eeA~~lf~~M~~~~~~~~~~~~~~~~~dtYn~L 369 (883)
+..---.+...|...-.+-.+ +.||.+--..+-. ++.+.|++.++-.+++.+-+....| .+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--------------~i 298 (531)
T COG3898 237 AMSLLDADPASARDDALEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--------------DI 298 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--------------HH
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCCcceehh------------hhHHHHHHHHhhhhHHhhhhcchHHHHHHHHHh
Q 002761 370 LRALCREGRIIELLEALEAMAKDNQPVPPRAMILS------------RKYRTLVSSWIEPLQEEAELGYEIDYIARYISE 437 (883)
Q Consensus 370 I~~y~~~G~~~eA~~lf~~M~~~Gi~i~p~~~~~~------------~~y~~Ll~~~~~~~~~m~~~g~~~D~l~~~~~~ 437 (883)
-..|.+..-.+.++.=+++.+..----|++....- ..-+.--+.....-....-|+.+-|+=.-
T Consensus 299 a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeA---- 374 (531)
T COG3898 299 ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEA---- 374 (531)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhh----
Q ss_pred C-CcHHHHHHHHHHhcCCCCCCC
Q 002761 438 G-GLTGERKRWVPRRGKTPLDPD 459 (883)
Q Consensus 438 ~-G~~~eA~~l~~~m~~~g~~Pd 459 (883)
. |.-+++..|+.+-.+.|-.|+
T Consensus 375 etGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 375 ETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred ccCchHHHHHHHHHHhcCCCCCc
No 385
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=23.34 E-value=71 Score=36.51 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhCCCCCCCcc
Q 002761 381 ELLEALEAMAKDNQPVPPRA 400 (883)
Q Consensus 381 eA~~lf~~M~~~Gi~i~p~~ 400 (883)
+-++-+.+|...|||.|--+
T Consensus 215 KE~RNLkRl~~aGIP~PePI 234 (520)
T KOG2270|consen 215 KEMRNLKRLNNAGIPCPEPI 234 (520)
T ss_pred HHHHHHHHHHhcCCCCCCce
Confidence 44566778888998744433
No 386
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.51 E-value=43 Score=37.71 Aligned_cols=59 Identities=31% Similarity=0.435 Sum_probs=41.1
Q ss_pred HHHHHHhhhcCcchhhHH--hhcccCCcccchhhhhhccccCcccCCCCC-CCCCCChHHHHHHHHhcccccchh
Q 002761 671 RVKEKLVEAKKPLQMIGV--QLLKDSDQTTTTSKRSMKRSSRMVEDDDDE-DWFPEDPFEAFKEMRKRKVFDVSD 742 (883)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 742 (883)
+.|+|-.+.|+.+-|--+ +||.+++- ..++|.-+=. ...-+|+.-+|.+.++.| ||+-=
T Consensus 363 l~K~kiqeeK~dy~~s~~p~~ll~e~dl------------pHVlEIydfp~efkteDll~~f~~yq~kg-fdIkW 424 (528)
T KOG4483|consen 363 LLKDKIQEEKKDYSMSKAPPPLLRESDL------------PHVLEIYDFPDEFKTEDLLKAFETYQNKG-FDIKW 424 (528)
T ss_pred hhhhhhhchhhhcccccCCCCCCCcccc------------cceeEeccCchhhccHHHHHHHHHhhcCC-ceeEE
Confidence 567777888888777543 55655552 3456665544 445789999999999998 88743
No 387
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=22.50 E-value=16 Score=20.77 Aligned_cols=10 Identities=50% Similarity=0.926 Sum_probs=7.4
Q ss_pred cCCcCccchH
Q 002761 786 GGTPTIGDCA 795 (883)
Q Consensus 786 ~~~~~~~~~~ 795 (883)
-||||.|-..
T Consensus 2 ~gTPTMGGi~ 11 (13)
T PF10555_consen 2 SGTPTMGGIV 11 (13)
T ss_pred CCCccceeEE
Confidence 4899998653
No 388
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=22.29 E-value=7e+02 Score=27.47 Aligned_cols=85 Identities=11% Similarity=0.026 Sum_probs=48.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHH-
Q 002761 110 LVVAYTLNGDHEGAMHSLKRELSA--GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVR- 185 (883)
Q Consensus 110 LI~a~~~~g~~~~A~~lf~~M~~~--Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdv-tyn~LI~~y~k- 185 (883)
=|.+++..+++.+++...-+--+. .++| ...-..|-.|.+.+....+.++-..-.+.--.-.. -|.++...|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 377888888888777654333221 1333 34444555677777777777766655543111112 45555555544
Q ss_pred ----CCCHHHHHHHH
Q 002761 186 ----NKYLEDANKVF 196 (883)
Q Consensus 186 ----~G~~eeA~~lf 196 (883)
.|.+.+|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 57777777665
No 389
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.25 E-value=3.1e+02 Score=26.80 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=21.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC
Q 002761 163 AAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205 (883)
Q Consensus 163 ~~m~~~g~~pdvtyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~ 205 (883)
..+.+.|+.++.---.++..+.+.+..-.|..+++++.+.+..
T Consensus 10 ~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~ 52 (145)
T COG0735 10 ERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPG 52 (145)
T ss_pred HHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCC
Confidence 3344445544444445555555554445555555555554433
No 390
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=22.06 E-value=1.3e+02 Score=21.42 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHH
Q 002761 102 PGPRSFHGLVVAYTLNGDHEGAM 124 (883)
Q Consensus 102 pd~~tyn~LI~a~~~~g~~~~A~ 124 (883)
-|..+|+.|-..|...|++++|.
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 35666777777777777776664
No 391
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=22.02 E-value=58 Score=37.31 Aligned_cols=62 Identities=23% Similarity=0.374 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCcCccchHHHHHHHHh-cCCcHHHHHHHhhhcccccccCCccHHHHHHHhhcc
Q 002761 773 ELAIQIMLKVIELGGTPTIGDCAVIIRAAIR-APLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDL 839 (883)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (883)
.-.||-|+|.+...-.+ -++-.-.+|+-|- .|+|.++.+||+..+ .||+.+|--++.+--+.
T Consensus 74 ~~llK~lLk~l~~~~~~-~~~~~~~lrnl~D~s~L~~sL~~Il~n~~----~FG~~v~s~a~~ivs~~ 136 (379)
T PF06025_consen 74 QQLLKSLLKFLSHAMQH-SGGFGDRLRNLIDSSSLLSSLKHILENPE----VFGPSVFSLAINIVSDF 136 (379)
T ss_pred HHHHHHHHHHHHHHhcc-CCCcccccccccchhhHHHHHHHHHhCcc----ccchHHHHHHHHHHHHH
Confidence 34567777755544332 2334457999999 999999999999865 79999999888775554
No 392
>PF05320 Pox_RNA_Pol_19: Poxvirus DNA-directed RNA polymerase 19 kDa subunit; InterPro: IPR007984 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses the transcription of DNA into RNA. It consists of at least eight subunits, this is the 19 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=21.80 E-value=39 Score=33.09 Aligned_cols=12 Identities=33% Similarity=0.365 Sum_probs=7.1
Q ss_pred hhhcCCCcchhh
Q 002761 659 VEQAEPESQDVD 670 (883)
Q Consensus 659 ~~~~~~~~~~~~ 670 (883)
++.|..++.||.
T Consensus 28 ~~~e~~~ssdv~ 39 (167)
T PF05320_consen 28 EDAESLESSDVS 39 (167)
T ss_pred cccccCcccccc
Confidence 445566677773
No 393
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=21.71 E-value=3e+02 Score=32.09 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 002761 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256 (883)
Q Consensus 177 n~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~k~g~~eeA~~lf~~M~~~G~~Pd~~tyn~LI~~y~k~ 256 (883)
..|+.-|.-.|++.+|.+...++.-- +--..+.+-+++.+.-+.|+-...+.++++.-..|+ +|-|-|-.+|.+.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~RV 587 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhhh
Confidence 45566666666666666666654220 001235666666666666666666666666555543 3555555555543
Q ss_pred C--------CHHHHHHHHHHch
Q 002761 257 G--------IPEVAFATFENME 270 (883)
Q Consensus 257 G--------~~e~A~~lf~~M~ 270 (883)
. ++..|.+.|+...
T Consensus 588 ~dsl~DlsLDvPna~ekf~~~V 609 (645)
T KOG0403|consen 588 YDSLPDLSLDVPNAYEKFERYV 609 (645)
T ss_pred hccCcccccCCCcHHHHHHHHH
Confidence 2 2334555555443
No 394
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=21.62 E-value=1.3e+02 Score=20.05 Aligned_cols=23 Identities=26% Similarity=0.096 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 002761 366 LSLYLRALCREGRIIELLEALEA 388 (883)
Q Consensus 366 Yn~LI~~y~~~G~~~eA~~lf~~ 388 (883)
...+-..+...|++++|..++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhC
Confidence 45678899999999999998863
No 395
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=21.02 E-value=1.3e+02 Score=29.16 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhcCCcCccc
Q 002761 770 WEVELAIQIMLKVIELGGTPTIGD 793 (883)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~ 793 (883)
-|.+-|-.+..++.+|||.|+++-
T Consensus 49 ee~~Ha~~lae~i~~lGg~p~~~~ 72 (153)
T cd00907 49 EEMKHADKLIERILFLEGLPNLQR 72 (153)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCc
Confidence 577888999999999999999854
No 396
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=20.99 E-value=1.2e+02 Score=28.28 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002761 366 LSLYLRALCREGRIIELLEALEAMAK 391 (883)
Q Consensus 366 Yn~LI~~y~~~G~~~eA~~lf~~M~~ 391 (883)
|..|+.-|-..|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 89999999999999999999999977
No 397
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=20.97 E-value=41 Score=42.70 Aligned_cols=9 Identities=22% Similarity=0.516 Sum_probs=4.8
Q ss_pred CcCccchHH
Q 002761 788 TPTIGDCAV 796 (883)
Q Consensus 788 ~~~~~~~~~ 796 (883)
-|+++|..+
T Consensus 537 ~P~l~~Lvl 545 (840)
T PF04147_consen 537 WPSLSDLVL 545 (840)
T ss_pred CCChhHHHH
Confidence 456665543
No 398
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.78 E-value=1.4e+03 Score=28.10 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCCCC
Q 002761 177 LILVEELVRNKYLEDANKVFLRGAKGGLRA 206 (883)
Q Consensus 177 n~LI~~y~k~G~~eeA~~lf~~M~~~gi~p 206 (883)
..|++++.. |+...++.++++|...|..|
T Consensus 255 ~~LldaL~~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 255 FRLIDALAQ-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 344444443 66667777777777666543
No 399
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=20.62 E-value=1.6e+02 Score=32.50 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=27.8
Q ss_pred CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002761 101 SPGPRS-FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143 (883)
Q Consensus 101 ~pd~~t-yn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~ 143 (883)
.|+..+ ||..|....+.|++++|+.|+++..+.|+.--..||.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 344444 5677777777777777777777777777654444443
No 400
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.30 E-value=1.3e+03 Score=26.48 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=29.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPR--SFHGLVVAYTLN--GDHEGAMHSLKRELS 132 (883)
Q Consensus 78 ~~~k~G~~~~A~~lf~~M~~~G~~pd~~--tyn~LI~a~~~~--g~~~~A~~lf~~M~~ 132 (883)
.+.+.+++..|.++|+++..+ ++++.. .|..+..+|..- -++.+|.+.|+....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344666667777777776665 444433 344444455442 345566666665443
No 401
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=20.08 E-value=1.5e+03 Score=27.07 Aligned_cols=163 Identities=10% Similarity=0.062 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 002761 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVE 181 (883)
Q Consensus 102 pd~~tyn~LI~a~~~~g~~~~A~~lf~~M~~~Gi~Pd~~ty~~LI~a~~~~g~~~~A~~l~~~m~~~g~~pdvtyn~LI~ 181 (883)
.|-...-++|..++.+....-...+..+|...| -+...|-.++..|... ..+.-..++.++.+..+...+.-.-|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 344556778888888888888888888888754 4667788888888887 4566778888888876644333345555
Q ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHH
Q 002761 182 ELVRNKYLEDANKVFLRGAKGGLRAT-----DEIYDLMIAEDCKAGDHSNALEIAYEME-AAGRMATTFHFNHLLSCQAT 255 (883)
Q Consensus 182 ~y~k~G~~eeA~~lf~~M~~~gi~pd-----~~tyn~LI~a~~k~g~~eeA~~lf~~M~-~~G~~Pd~~tyn~LI~~y~k 255 (883)
-|-+ ++...+...|.+....=++.. ...|.-|+.-- ..+.+..+.+..... ..|..--.+.+--+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 788888888877654332211 13455554422 235566666666655 34555556666666677888
Q ss_pred cCCHHHHHHHHHHch
Q 002761 256 CGIPEVAFATFENME 270 (883)
Q Consensus 256 ~G~~e~A~~lf~~M~ 270 (883)
..++.+|.+++..+.
T Consensus 218 ~eN~~eai~Ilk~il 232 (711)
T COG1747 218 NENWTEAIRILKHIL 232 (711)
T ss_pred ccCHHHHHHHHHHHh
Confidence 888888888888766
No 402
>PHA02876 ankyrin repeat protein; Provisional
Probab=20.01 E-value=1.7e+03 Score=27.43 Aligned_cols=52 Identities=6% Similarity=-0.094 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHcCCCCChhHH--HHHHHHHHccCChHHHHHHH
Q 002761 26 IRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTN--GSVVSAAEQGLRLIFMEELM 77 (883)
Q Consensus 26 yn~LI~~~~k~g~~~~A~~M~~~gv~Pd~~ty--~~ll~a~~~~~~~~~~~~L~ 77 (883)
+-.++....+.|..+-+.-+++.|..+|.... .+.+...+..|..+..+.|.
T Consensus 145 ~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL 198 (682)
T PHA02876 145 YMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLL 198 (682)
T ss_pred hhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 34456666677777777777777776654431 12333334445555555443
Done!