Query 002761
Match_columns 883
No_of_seqs 574 out of 4330
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 18:54:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002761.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1473-1477//hhsearch_pdb/002761hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 258.0 37.2 446 21-556 82-588 (597)
2 4g26_A Pentatricopeptide repea 1.0 1 1 255.1 28.3 216 86-333 7-223 (501)
3 4g26_A Pentatricopeptide repea 1.0 1 1 254.9 24.2 203 158-375 9-222 (501)
4 2xpi_A Anaphase-promoting comp 1.0 1 1 242.3 33.4 424 49-564 79-562 (597)
5 3spa_A Mtrpol, DNA-directed RN 1.0 1 1 171.8 9.1 149 104-257 127-286 (1134)
6 3spa_A Mtrpol, DNA-directed RN 1.0 1 1 170.8 8.4 132 138-269 126-262 (1134)
7 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 160.1 40.7 289 81-392 45-334 (388)
8 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 157.3 43.6 358 78-495 8-368 (388)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 146.2 39.3 311 101-460 23-362 (450)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 143.6 37.8 293 78-393 35-359 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=258.01 Aligned_cols=446 Identities=8% Similarity=-0.084 Sum_probs=292.3
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHC--CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9978999999888818994369999883--79989668999999999059767999999999259937999999999988
Q 002761 21 TGVVPIRSAMSSPEKKTRRKKQQRRQQK--HGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAA 98 (883)
Q Consensus 21 ~~~~s~n~LI~~~~k~g~~~~A~~M~~~--gv~Pd~~ty~~li~a~~~~~~~~~~~~L~~~~k~g~~~~A~~lf~~M~~~ 98 (883)
+++..|+.++..+.+.|++++|...++. +..|+..++..+..++... |+++.|..+|+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~---------------g~~~~A~~~~~~~~~~ 146 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCT---------------GDYARAKCLLTKEDLY 146 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC---------------CCHHHHHHHHHHHHCC
T ss_conf 8999999999999874583479999999996089935799999999974---------------7699999999987335
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999999999999859989999999999988---------------999999999999999990699799999999
Q 002761 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA---------------GVRPLHETLIALARLFGSKGLATKGLEILA 163 (883)
Q Consensus 99 G~~pd~~tyn~LI~ay~~~g~~eeA~~ll~~M~~~---------------Gi~Pd~~ty~~Li~a~~~~g~~~~A~~i~~ 163 (883)
+++..+++.++.+|.+.|++++|..+|+++... +..++..+|+.++.+|.+.|++++|..+|.
T Consensus 147 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 224 (597)
T 2xpi_A 147 --NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYK 224 (597)
T ss_dssp --GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf --456508999999999886699999998424886322323433432112351258999998899998399899999999
Q ss_pred HHHHCCCCHHHHHH--------------------------------------HHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99982999049999--------------------------------------9999999889988999999997849999
Q 002761 164 AMEKINYDIRQAWL--------------------------------------ILVEELVRNKYLEDANKVFLRGAKGGLR 205 (883)
Q Consensus 164 ~m~~~g~~pd~tyn--------------------------------------~LI~~y~k~G~~eeA~~lf~~M~~~gi~ 205 (883)
+|.+.+......+. .++..|.+.|++++|..+|+.+... +
T Consensus 225 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~ 302 (597)
T 2xpi_A 225 EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--E 302 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--G
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--C
T ss_conf 99972932569999999850346156789998657742344308899999999999980731399999999876438--8
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHH
Q ss_conf 99999999999999739968999999999985999999999999999998599799999999815189999999999999
Q 002761 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285 (883)
Q Consensus 206 pd~~tyn~LI~a~~~~g~~e~A~~lf~~M~~~gi~pd~~tyn~LI~ay~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~ 285 (883)
++..+|+.++.+|.+.|++++|..+|+.|...+. .+..+++.++..|.+.|++++|..+|+.+.. ..+.+..+|+.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~ 378 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVD---RHPEKAVTWLA 378 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH---HCCCCHHHHHH
T ss_conf 3099999999999984689999999999997295-5379999999999982777799999999985---18354799999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 99999983994619999999999596269999999999999999998299999999999987677997421366888837
Q 002761 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365 (883)
Q Consensus 286 LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~~LI~a~~~~g~~eeA~~if~~m~~~~~~~~~~~~~~~~~dt 365 (883)
++..|.+.| +.++|.++|.++.+. ...+..+|..++.+|.+.|++++|..+|+.+.+..... ..+
T Consensus 379 l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~ 443 (597)
T 2xpi_A 379 VGIYYLCVN---KISEARRYFSKSSTM---DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT---------HLP 443 (597)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC---------SHH
T ss_pred HHHHHHHHC---CHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------HHH
T ss_conf 999999835---699999999999872---97778999999999997577799999999999868134---------389
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999983998899999999964999999950001511999999986534876431460899999999079499999
Q 002761 366 LSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERK 445 (883)
Q Consensus 366 Y~~LI~~y~k~G~~eeA~~ll~~M~~~gi~i~p~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~vD~L~~~~~~~G~~~eA~ 445 (883)
|+.++.+|.+.|++++|.++|++|.... |.+... |.. ++..+...|..++|.
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~----~~~---------------------l~~~~~~~g~~~~A~ 495 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALF---QYDPLL----LNE---------------------LGVVAFNKSDMQTAI 495 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCCHHH----HHH---------------------HHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHH----HHH---------------------HHHHHHHHCCHHHHH
T ss_conf 9999999998579999999999999848---887679----999---------------------999999818999999
Q ss_pred HHHHHHCCC----CCCCC--CCCEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999984379----99999--531003560789999987754259999999998307991026888228999999999631
Q 002761 446 RWVPRRGKT----PLDPD--AVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLI 519 (883)
Q Consensus 446 ~l~~~m~~~----gi~Pd--~~~~ty~~li~~~l~~~c~~~~~~~A~~Ll~~M~~~G~~~lls~~~~~~~~vi~~l~~~~ 519 (883)
.+++.+... +..|+ ..+| ..+...+++.|+.++|..+++.+.+.+.. +...|..+...+.+.|
T Consensus 496 ~~~~~~~~~~~~~~~~p~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 496 NHFQNALLLVKKTQSNEKPWAATW------ANLGHAYRKLKMYDAAIDALNQGLLLSTN-----DANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHHHHSCCCSGGGHHHH------HHHHHHHHHTTCHHHHHHHHHHHHHHSSC-----CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------HHHHHHHHHHCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHC
T ss_conf 999999985323454535499999------99999999804799999999999973899-----7389999999999817
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 6998545676663199999999998539998830299
Q 002761 520 KGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRN 556 (883)
Q Consensus 520 ~~~~~~v~K~~g~S~iev~~~v~ef~~~g~~~~~~~~ 556 (883)
+ +.++...+......+-.++..+.
T Consensus 565 ~-------------~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 565 I-------------PGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp C-------------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred C-------------HHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 8-------------99999999999720888748999
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=255.06 Aligned_cols=216 Identities=13% Similarity=0.117 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 7999999999988999999-999999999998599899999999999889999999999999999906997999999999
Q 002761 86 PRVNDVIYDMIAAGLSPGP-RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAA 164 (883)
Q Consensus 86 ~~A~~lf~~M~~~G~~pd~-~tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~A~~i~~~ 164 (883)
..+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|...|+.||..||++||.+|++.+....+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH------
T ss_conf 45999999999826668979999999999985989999999999999818998783999999999857830433------
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99829990499999999999889988999999997849999999999999999997399689999999999859999999
Q 002761 165 MEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTF 244 (883)
Q Consensus 165 m~~~g~~pd~tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~~e~A~~lf~~M~~~gi~pd~~ 244 (883)
.+.+.++.|.++|++|...|+.||..|||+||.+|++.|++++|.++|++|...|+.||..
T Consensus 81 -------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 141 (501)
T 4g26_A 81 -------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141 (501)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred -------------------HHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf -------------------3212499999999999980899989999999999984697788999999999728988611
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 99999999998599799999999815189999999999999999999839946199999999995962699999999999
Q 002761 245 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324 (883)
Q Consensus 245 tyn~LI~ay~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~Ty~ 324 (883)
+||+||.+|++.|++++|.++|++|. +.|+.||..||++||.+|++.| +.++|.++|++|.+ .|+.|+..||+
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~--~~G~~Pd~~ty~~Li~~~~~~g---~~d~A~~ll~~Mr~--~g~~ps~~T~~ 214 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMV--ESEVVPEEPELAALLKVSMDTK---NADKVYKTLQRLRD--LVRQVSKSTFD 214 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--HTSSBCHHHHH
T ss_pred EEHHHHHHHHHCCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH--HCCCCCHHHHH
T ss_conf 10489999998889999999999998--6299999999999999985389---89999999999999--48996999999
Q ss_pred HHHHHHHHC
Q ss_conf 999999982
Q 002761 325 LLVECFTKY 333 (883)
Q Consensus 325 ~LI~a~~~~ 333 (883)
.++..|+..
T Consensus 215 ~l~~~F~s~ 223 (501)
T 4g26_A 215 MIEEWFKSE 223 (501)
T ss_dssp HHHHHHHSH
T ss_pred HHHHHHHCC
T ss_conf 999998307
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=254.95 Aligned_cols=203 Identities=12% Similarity=0.139 Sum_probs=113.1
Q ss_pred HHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---------HHH
Q ss_conf 99999999982999--0499999999999889988999999997849999999999999999997399---------689
Q 002761 158 GLEILAAMEKINYD--IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD---------HSN 226 (883)
Q Consensus 158 A~~i~~~m~~~g~~--pd~tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~---------~e~ 226 (883)
+..+.+.+.+.+.. |...++.+|++|++.|++++|.++|++|.+.|+.||.+|||+||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHH
T ss_conf 99999999982666897999999999998598999999999999981899878399999999985783043332124999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99999999985999999999999999998599799999999815189999999999999999999839946199999999
Q 002761 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306 (883)
Q Consensus 227 A~~lf~~M~~~gi~pd~~tyn~LI~ay~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf 306 (883)
|.++|++|...|+.||..|||+||.+|++.|++++|.++|++|. +.|+.||..|||++|.+|++.| +.++|.++|
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~--~~g~~Pd~~tyn~lI~~~~~~g---~~~~A~~l~ 163 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK--AFGIQPRLRSYGPALFGFCRKG---DADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HCCCCCCCCEEHHHHHHHHHCC---CHHHHHHHH
T ss_conf 99999999980899989999999999984697788999999999--7289886111048999999888---999999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 995962699999999999999999982999999999999876779974213668888379999999998
Q 002761 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 375 (883)
Q Consensus 307 ~~M~~~~~gi~Pd~~Ty~~LI~a~~~~g~~eeA~~if~~m~~~~~~~~~~~~~~~~~dtY~~LI~~y~k 375 (883)
.+|.+ .|+.||..||++||.+|++.|++++|.++|++|++.+..|+.. ||+.++..|+.
T Consensus 164 ~~M~~--~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~--------T~~~l~~~F~s 222 (501)
T 4g26_A 164 AHMVE--SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS--------TFDMIEEWFKS 222 (501)
T ss_dssp HHHHH--TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH--------HHHHHHHHHHS
T ss_pred HHHHH--CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH--------HHHHHHHHHHC
T ss_conf 99986--2999999999999999853898999999999999948996999--------99999999830
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=242.27 Aligned_cols=424 Identities=9% Similarity=-0.046 Sum_probs=321.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 79989668999999999059767999999999259937999999999988999999999999999998599899999999
Q 002761 49 HGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128 (883)
Q Consensus 49 gv~Pd~~ty~~li~a~~~~~~~~~~~~L~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~LI~ay~~~g~~eeA~~ll~ 128 (883)
...++...|+.++..+ .+.|+++.|..+|++|... .|+..+++.++.+|.+.|++++|..+|+
T Consensus 79 ~~~~~~~~~~~~~~~~---------------~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 79 DSLSREDYLRLWRHDA---------------LMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ---CHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 3378999999999999---------------8745834799999999960--8993579999999997476999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HC--------------CCCHHH-HHHHHHHHHHHCCCHHHH
Q ss_conf 99988999999999999999990699799999999999-82--------------999049-999999999988998899
Q 002761 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME-KI--------------NYDIRQ-AWLILVEELVRNKYLEDA 192 (883)
Q Consensus 129 ~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~A~~i~~~m~-~~--------------g~~pd~-tyn~LI~~y~k~G~~eeA 192 (883)
.+.. ..++..+++.++.+|.+.|++++|..+|+++. .. +...+. +|+.++.+|.+.|++++|
T Consensus 142 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 8733--54565089999999998866999999984248863223234334321123512589999988999983998999
Q ss_pred HHHHHHHHHCCCCCCHHHH--------------------------------------HHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999997849999999999--------------------------------------99999999739968999999999
Q 002761 193 NKVFLRGAKGGLRATDEIY--------------------------------------DLMIAEDCKAGDHSNALEIAYEM 234 (883)
Q Consensus 193 ~~lf~~M~~~gi~pd~~ty--------------------------------------n~LI~a~~~~g~~e~A~~lf~~M 234 (883)
..+|++|.+.+. .+...+ +.++..|.+.|++++|..+|+.|
T Consensus 220 ~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 220 KECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCC-HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999997293-2569999999850346156789998657742344308899999999999980731399999999876
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 98599999999999999999859979999999981518999999999999999999983994619999999999596269
Q 002761 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314 (883)
Q Consensus 235 ~~~gi~pd~~tyn~LI~ay~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~ 314 (883)
... .++..+++.++.+|.+.|++++|..+|+.+.. .+ +.+..+|+.++.+|.+.| +..+|..+|.+|..
T Consensus 299 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~--- 367 (597)
T 2xpi_A 299 NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILE--ID-PYNLDVYPLHLASLHESG---EKNKLYLISNDLVD--- 367 (597)
T ss_dssp TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCCTTHHHHHHHHHHHT---CHHHHHHHHHHHHH---
T ss_pred HCC--CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--CC-CCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHH---
T ss_conf 438--83099999999999984689999999999997--29-553799999999999827---77799999999985---
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999999829999999999998767799742136688883799999999983998899999999964999
Q 002761 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 394 (883)
Q Consensus 315 gi~Pd~~Ty~~LI~a~~~~g~~eeA~~if~~m~~~~~~~~~~~~~~~~~dtY~~LI~~y~k~G~~eeA~~ll~~M~~~gi 394 (883)
....+..++..+..+|.+.|++++|..+|+.+.+..... ..+|+.++.+|.+.|++++|.++|++|...+
T Consensus 368 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF---------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
T ss_conf 183547999999999998356999999999998729777---------8999999999997577799999999999868-
Q ss_pred CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHH
Q ss_conf 99995000151199999998653487643146089999999907949999999998437999999531003560789999
Q 002761 395 PVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFK 474 (883)
Q Consensus 395 ~i~p~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~vD~L~~~~~~~G~~~eA~~l~~~m~~~gi~Pd~~~~ty~~li~~~l~ 474 (883)
|.+... +.. ++..+...|..++|..+++.+....- .+..+| ..+..
T Consensus 438 --~~~~~~----~~~---------------------l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~------~~l~~ 483 (597)
T 2xpi_A 438 --QGTHLP----YLF---------------------LGMQHMQLGNILLANEYLQSSYALFQ-YDPLLL------NELGV 483 (597)
T ss_dssp --TTCSHH----HHH---------------------HHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHH------HHHHH
T ss_pred --CCCHHH----HHH---------------------HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHH------HHHHH
T ss_conf --134389----999---------------------99999985799999999999998488-876799------99999
Q ss_pred HHHHHHCHHHHHHHHHHHHCC----CCCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 987754259999999998307----991026888--22899999999963169985456766631999999999985399
Q 002761 475 QRCLEDGKKYHRKLLRTLQNE----GPAVLGDVS--ESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQG 548 (883)
Q Consensus 475 ~~c~~~~~~~A~~Ll~~M~~~----G~~~lls~~--~~~~~~vi~~l~~~~~~~~~~v~K~~g~S~iev~~~v~ef~~~g 548 (883)
.+++.|+.++|.++++.+.+. +..| + ...|..+...+++.|+ +.++...+..+...+
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p----~~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNE----KPWAATWANLGHAYRKLKM-------------YDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCS----GGGHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHS
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHHHHHHCC-------------HHHHHHHHHHHHHHC
T ss_conf 99981899999999999998532345453----5499999999999998047-------------999999999999738
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 9883029999999999
Q 002761 549 LPTDGTRNVLYQRVQK 564 (883)
Q Consensus 549 ~~~~~~~~~l~~~l~~ 564 (883)
-.++..+..+...+.+
T Consensus 547 p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 547 TNDANVHTAIALVYLH 562 (597)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9973899999999998
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=171.77 Aligned_cols=149 Identities=10% Similarity=0.034 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHH-HHHHH
Q ss_conf 99999999999985998999999999998---899999999999999999069979999999999982999049-99999
Q 002761 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELS---AGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLIL 179 (883)
Q Consensus 104 ~~tyn~LI~ay~~~g~~eeA~~ll~~M~~---~Gi~Pd~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd~-tyn~L 179 (883)
..+||+||.+||+.|++++|.++|.+|.. .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||+ +||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999999999868899999999999998764599977767999999998689999999999999981999859999999
Q ss_pred HHHHHHCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHH
Q ss_conf 999998899-889999999978499999999999999999973996899999999998599999------9999999999
Q 002761 180 VEELVRNKY-LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT------TFHFNHLLSC 252 (883)
Q Consensus 180 I~~y~k~G~-~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~~e~A~~lf~~M~~~gi~pd------~~tyn~LI~a 252 (883)
|.++++.|+ .++|.++|++|.+.|+.||.++|++++.++.+.+-+ +..+.+ ..++.|+ ..+.+.|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL----~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL----KAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH----HHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHH----HHHHHH-CCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9999868996999999999999809998731101463715699999----999984-85668998875545661899998
Q ss_pred HHHCC
Q ss_conf 99859
Q 002761 253 QATCG 257 (883)
Q Consensus 253 y~k~G 257 (883)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HCCCC
T ss_conf 73678
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=170.78 Aligned_cols=132 Identities=10% Similarity=0.036 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---CCCCHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 999999999999906997999999999998---2999049-999999999988998899999999784999999999999
Q 002761 138 LHETLIALARLFGSKGLATKGLEILAAMEK---INYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213 (883)
Q Consensus 138 d~~ty~~Li~a~~~~g~~~~A~~i~~~m~~---~g~~pd~-tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~ 213 (883)
-..||+++|.+||+.|++++|..+|..|.+ .|+.||+ +||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99999999999986889999999999999876459997776799999999868999999999999998199985999999
Q ss_pred HHHHHHHCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 99999973996-899999999998599999999999999999859979999999981
Q 002761 214 MIAEDCKAGDH-SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269 (883)
Q Consensus 214 LI~a~~~~g~~-e~A~~lf~~M~~~gi~pd~~tyn~LI~ay~k~G~~e~A~~lf~~M 269 (883)
+|.++|+.|+. ++|.++|++|...|+.||..+|++++..+.+.+-++...+++..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 999998689969999999999998099987311014637156999999999848566
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=160.11 Aligned_cols=289 Identities=14% Similarity=0.067 Sum_probs=136.3
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 25993799999999998899999999999999999859989999999999988999999999999999990699799999
Q 002761 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE 160 (883)
Q Consensus 81 k~g~~~~A~~lf~~M~~~G~~pd~~tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~A~~ 160 (883)
..|+++.|...++...... +.+...|..+...|.+.|++++|...|+++.... +.+..+|..+..++.+.|+++.|..
T Consensus 45 ~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 45 QCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred HCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 8689999999999997619-7866999999999987799999999999998749-6539999999999998589999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999982999049999999999988998899999999784999999999999999999739968999999999985999
Q 002761 161 ILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240 (883)
Q Consensus 161 i~~~m~~~g~~pd~tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g~~e~A~~lf~~M~~~gi~ 240 (883)
.|..+.+........+..+...|...|++++|...|.++.... +-+..+|+.+...+...|++++|...|+.+.....
T Consensus 123 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p- 200 (388)
T 1w3b_A 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP- 200 (388)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-
T ss_conf 9999997598968999999999998468999999999998729-89789999999999985999999999999985598-
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC-C
Q ss_conf 999999999999998599799999999815189999999999999999999839946199999999995962699999-9
Q 002761 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP-N 319 (883)
Q Consensus 241 pd~~tyn~LI~ay~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~P-d 319 (883)
.+...+..+...+...|++++|...|..... . .+.+..+|..+...|...| +.++|+..|+++.. ..| +
T Consensus 201 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~-~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~----~~p~~ 270 (388)
T 1w3b_A 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALS--L-SPNHAVVHGNLACVYYEQG---LIDLAIDTYRRAIE----LQPHF 270 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----TCSSC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--H-CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----HCCCC
T ss_conf 8679999999999985789999999999985--2-9687899999999999868---89999999999986----49998
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999999999998299999999999987677997421366888837999999999839988999999999649
Q 002761 320 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392 (883)
Q Consensus 320 ~~Ty~~LI~a~~~~g~~eeA~~if~~m~~~~~~~~~~~~~~~~~dtY~~LI~~y~k~G~~eeA~~ll~~M~~~ 392 (883)
..++..+..++.+.|++++|...|+.+.+..+.. ..+|..+...+.+.|++++|...|+++...
T Consensus 271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH---------ADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 8999999999998699799999999998649444---------999999999999848999999999999860
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=157.32 Aligned_cols=358 Identities=12% Similarity=0.041 Sum_probs=289.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99925993799999999998899999999999999999859989999999999988999999999999999990699799
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK 157 (883)
Q Consensus 78 ~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~ 157 (883)
.+.+.|+++.|...+..+.+.. +.+...+..+...+.+.|++++|...++..... .+.+..+|..+..++.+.|+++.
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 9987799999999999999849-788999999999999868999999999999761-97866999999999987799999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999829990499999999999889988999999997849999999-9999999999973996899999999998
Q 002761 158 GLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEA 236 (883)
Q Consensus 158 A~~i~~~m~~~g~~pd~tyn~LI~~y~k~G~~eeA~~lf~~M~~~gi~pd~-~tyn~LI~a~~~~g~~e~A~~lf~~M~~ 236 (883)
|...|..+.+........|..+...|.+.|++++|...|..+.+. .|+. ..+..+...+...|++++|...|+.+..
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999998749653999999999999858999999999999975--989689999999999984689999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 59999999999999999985997999999998151899999999999999999998399461999999999959626999
Q 002761 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316 (883)
Q Consensus 237 ~gi~pd~~tyn~LI~ay~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi 316 (883)
.. +-+..+|+.+...|.+.|+++.|...|+++.. . -+.+...|..+...+...|.++ +|+..|.+... .
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~-~p~~~~~~~~lg~~~~~~~~~~---~A~~~~~~al~----~ 232 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT--L-DPNFLDAYINLGNVLKEARIFD---RAVAAYLRALS----L 232 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHTTTCTT---HHHHHHHHHHH----H
T ss_pred HC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--C-CCCCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHH----H
T ss_conf 29-89789999999999985999999999999985--5-9886799999999999857899---99999999985----2
Q ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99-99999999999998299999999999987677997421366888837999999999839988999999999649999
Q 002761 317 QP-NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP 395 (883)
Q Consensus 317 ~P-d~~Ty~~LI~a~~~~g~~eeA~~if~~m~~~~~~~~~~~~~~~~~dtY~~LI~~y~k~G~~eeA~~ll~~M~~~gi~ 395 (883)
.| +..++..+..++...|++++|...|+.+.+..+.. +++|..+...|.+.|++++|...|+++....
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 301 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF---------PDAYCNLANALKEKGSVAEAEDCYNTALRLC-- 301 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC---------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
T ss_conf 96878999999999998688999999999998649998---------8999999999998699799999999998649--
Q ss_pred CCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC-CCEECCCHHHHHHH
Q ss_conf 99950001511999999986534876431460899999999079499999999984379999995-31003560789999
Q 002761 396 VPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDA-VGFIYSNPMETSFK 474 (883)
Q Consensus 396 i~p~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~vD~L~~~~~~~G~~~eA~~l~~~m~~~gi~Pd~-~~~ty~~li~~~l~ 474 (883)
|.+... + ..++..+...|..++|..+++.+.. ..|+. ..+ ..+..
T Consensus 302 -p~~~~~----~---------------------~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~------~~l~~ 347 (388)
T 1w3b_A 302 -PTHADS----L---------------------NNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAH------SNLAS 347 (388)
T ss_dssp -TTCHHH----H---------------------HHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHH------HHHHH
T ss_pred -CCCHHH----H---------------------HHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCHHHH------HHHHH
T ss_conf -444999----9---------------------9999999984899999999999986--098739999------77999
Q ss_pred HHHHHHCHHHHHHHHHHHHCC
Q ss_conf 987754259999999998307
Q 002761 475 QRCLEDGKKYHRKLLRTLQNE 495 (883)
Q Consensus 475 ~~c~~~~~~~A~~Ll~~M~~~ 495 (883)
.++..|+.++|...++.+...
T Consensus 348 ~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 348 VLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHHHH
T ss_conf 999868889999999999861
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=146.21 Aligned_cols=311 Identities=12% Similarity=0.085 Sum_probs=224.1
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999999999999985998999999999998899999999999999999069979999999999982999049999999
Q 002761 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILV 180 (883)
Q Consensus 101 ~pd~~tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~A~~i~~~m~~~g~~pd~tyn~LI 180 (883)
+.+...|..+...|.+.|++++|..+|+++... .+.+..++..+..++...|+++.|...|..+.+.+.....++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 789999999999999879999999999999984-9716899999999999879979999999999844987489999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 9999889988999999997849999999----999999------------999997399689999999999859999999
Q 002761 181 EELVRNKYLEDANKVFLRGAKGGLRATD----EIYDLM------------IAEDCKAGDHSNALEIAYEMEAAGRMATTF 244 (883)
Q Consensus 181 ~~y~k~G~~eeA~~lf~~M~~~gi~pd~----~tyn~L------------I~a~~~~g~~e~A~~lf~~M~~~gi~pd~~ 244 (883)
..|.+.|++++|...|+.+... .|+. ..+..+ ...+...|++++|...|+.+.... +.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHH
T ss_conf 9999869999999999999724--99970168899999999999999999999998689999999999999868-89769
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHH-HH
Q ss_conf 99999999998599799999999815189999999999999999999839946199999999995962699999999-99
Q 002761 245 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK-TY 323 (883)
Q Consensus 245 tyn~LI~ay~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~LI~ay~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd~~-Ty 323 (883)
++..+..+|.+.|++++|..+|+.+.. . .+.+..+|..+...|...| +.++|+..|.++.. ..|+.. .+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~p~~~~~~ 248 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASK--L-KNDNTEAFYKISTLYYQLG---DHELSLSEVRECLK----LDQDHKRCF 248 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHH--H-HCSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----HCTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--H-CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----HCCCHHHHH
T ss_conf 999999999877999999999999998--6-8898799999999999759---99999999999987----599808999
Q ss_pred HHH------------HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999------------99999829999999999998767799742136688883799999999983998899999999964
Q 002761 324 ALL------------VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391 (883)
Q Consensus 324 ~~L------------I~a~~~~g~~eeA~~if~~m~~~~~~~~~~~~~~~~~dtY~~LI~~y~k~G~~eeA~~ll~~M~~ 391 (883)
..+ ..+|.+.|++++|..+|..+.+........ ...+|..+...+.+.|++++|...++++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY-----TVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHH-----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999999999999987179999999999998508733689-----999999999999987889999999999988
Q ss_pred CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999950001511999999986534876431460899999999079499999999984379999995
Q 002761 392 DNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDA 460 (883)
Q Consensus 392 ~gi~i~p~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~vD~L~~~~~~~G~~~eA~~l~~~m~~~gi~Pd~ 460 (883)
.. |.+... + ..++..+...|..++|...++.... +.|+.
T Consensus 324 ~~---p~~~~~----~---------------------~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~ 362 (450)
T 2y4t_A 324 ME---PDNVNA----L---------------------KDRAEAYLIEEMYDEAIQDYETAQE--HNEND 362 (450)
T ss_dssp HC---TTCHHH----H---------------------HHHHHHHHHTTCHHHHHHHHHHHHT--TSSSC
T ss_pred HC---CCCHHH----H---------------------HHHHHHHHHHCCHHHHHHHHHHHHH--HCCCH
T ss_conf 48---454899----9---------------------9999999870379999999999988--59352
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=143.64 Aligned_cols=293 Identities=13% Similarity=0.075 Sum_probs=218.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99925993799999999998899999999999999999859989999999999988999999999999999990699799
Q 002761 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK 157 (883)
Q Consensus 78 ~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~LI~ay~~~g~~eeA~~ll~~M~~~Gi~Pd~~ty~~Li~a~~~~g~~~~ 157 (883)
.+.+.|+++.|..+|+.+.... +.+...|..+..+|...|++++|...|+++...+ +.+..++..+..++.+.|+++.
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHH
T ss_conf 9998799999999999999849-7168999999999998799799999999998449-8748999999999998699999
Q ss_pred HHHHHHHHHHCCCCHH---HHHHHH------------HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999998299904---999999------------9999988998899999999784999999999999999999739
Q 002761 158 GLEILAAMEKINYDIR---QAWLIL------------VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAG 222 (883)
Q Consensus 158 A~~i~~~m~~~g~~pd---~tyn~L------------I~~y~k~G~~eeA~~lf~~M~~~gi~pd~~tyn~LI~a~~~~g 222 (883)
|...|..+.+...... ..+..+ ...|.+.|++++|...|+.+.... +.+...+..+...|...|
T Consensus 113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 191 (450)
T 2y4t_A 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEG 191 (450)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
T ss_conf 9999999972499970168899999999999999999999998689999999999999868-897699999999998779
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCCCCCCHHHHHHH------------HHHH
Q ss_conf 9689999999999859999999999999999985997999999998151899999999999999------------9999
Q 002761 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV------------IQAY 290 (883)
Q Consensus 223 ~~e~A~~lf~~M~~~gi~pd~~tyn~LI~ay~k~G~~e~A~~lf~~M~~g~~gi~pd~~tyn~L------------I~ay 290 (883)
++++|..+|+.+.... +.+..++..+...|...|++++|...|+.+.. . .+.+...+..+ ...|
T Consensus 192 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~p~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (450)
T 2y4t_A 192 EPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK--L-DQDHKRCFAHYKQVKKLNKLIESAEEL 267 (450)
T ss_dssp CGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999868-89879999999999975999999999999987--5-998089999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 98399461999999999959626999999-----9999999999998299999999999987677997421366888837
Q 002761 291 TRAESYDRVQDVAELLGMMVEDHKRLQPN-----VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365 (883)
Q Consensus 291 ~~~G~~d~~~eAl~lf~~M~~~~~gi~Pd-----~~Ty~~LI~a~~~~g~~eeA~~if~~m~~~~~~~~~~~~~~~~~dt 365 (883)
...| +..+|+.+|.++.. ..|+ ...+..+..++.+.|++++|..++..+....... ...
T Consensus 268 ~~~g---~~~~A~~~~~~~l~----~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---------~~~ 331 (450)
T 2y4t_A 268 IRDG---RYTDATSKYESVMK----TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN---------VNA 331 (450)
T ss_dssp HHHT---CHHHHHHHHHHHHH----HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------HHH
T ss_pred HHCC---CHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------HHH
T ss_conf 8717---99999999999985----0873368999999999999998788999999999998848454---------899
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999998399889999999996499
Q 002761 366 LSLYLRALCREGRIIELLEALEAMAKDN 393 (883)
Q Consensus 366 Y~~LI~~y~k~G~~eeA~~ll~~M~~~g 393 (883)
|..+..+|...|++++|...|++..+..
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 9999999987037999999999998859
Done!