BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002763
(883 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 59/153 (38%), Positives = 76/153 (49%), Gaps = 31/153 (20%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
PN SD++GRT LH AA G + V LLL ADPN+ DSDG PL A GH+ ++KLL
Sbjct: 30 PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 89
Query: 615 MENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEI 674
+ AD N+ D ++G T LH A + EI
Sbjct: 90 LSKGADPNAKD-------------------------------SDGRTPLHYAAENGHKEI 118
Query: 675 VRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
V+ LL + AD + D G TP DLA + G+EEI
Sbjct: 119 VKLLLSKGADPNTSDSDGRTPLDLAREHGNEEI 151
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 625 DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
++G AAE N + +K+++ G D ++G T LH A + EIV+ LL + AD
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 685 VDKPDVHGWTPRDLADQQGHEEI 707
+ D G TP A + GH+EI
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEI 85
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 97.8 bits (242), Expect = 3e-20, Method: Composition-based stats.
Identities = 56/144 (38%), Positives = 86/144 (59%), Gaps = 8/144 (5%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVG- 627
AA G+++ V L++ AD N+ DSDG PL A GH+ ++KLL+ AD+N+ D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 628 ----HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKA 683
H+A A++ + E++K ++ G DV + ++G T LH A E + EIV+ L+ + A
Sbjct: 71 RTPLHYA---AKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 684 DVDKPDVHGWTPRDLADQQGHEEI 707
DV+ D G TP DLA + G+EEI
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEI 151
Score = 72.8 bits (177), Expect = 7e-13, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 599 LWEAMLGGHENVIKLLMENHADINSGDVG-----HFACTAAEQNNLELLKEIVCYGGDVT 653
L EA G+++ +K L+EN AD+N+ D H+ AA++ + E++K ++ G DV
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHY---AAKEGHKEIVKLLISKGADVN 64
Query: 654 RQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
+ ++G T LH A E + EIV+ L+ + ADV+ D G TP A ++GH+EI
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEI 118
Score = 59.7 bits (143), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 625 DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
++G AAE N + +K+++ G DV ++G T LH A E + EIV+ L+ + AD
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD 62
Query: 685 VDKPDVHGWTPRDLADQQGHEEI 707
V+ D G TP A ++GH+EI
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEI 85
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 96.7 bits (239), Expect = 4e-20, Method: Composition-based stats.
Identities = 57/152 (37%), Positives = 77/152 (50%), Gaps = 31/152 (20%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N SD++G+T LH+AA G + V LLL ADPN+ DSDG PL A GH+ V+KLL+
Sbjct: 31 NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 90
Query: 616 ENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIV 675
AD N+ D ++G T LH+A + E+V
Sbjct: 91 SQGADPNAKD-------------------------------SDGKTPLHLAAENGHKEVV 119
Query: 676 RFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
+ LL Q AD + D G TP DLA + G+EE+
Sbjct: 120 KLLLSQGADPNTSDSDGRTPLDLAREHGNEEV 151
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
PN D++G+T LH+AA G + V LLL ADPN+ DSDG PL A GH+ V+KLL
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 615 MENHADINSGDV-GHFACT-AAEQNNLELLKEIVCYGG 650
+ AD N+ D G A E N E++K + GG
Sbjct: 123 LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 599 LWEAMLGGHENVIKLLMENHADINSGDVG-----HFACTAAEQNNLELLKEIVCYGGDVT 653
L EA G+++ +K L+EN AD+N+ D H AAE + E++K ++ G D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHL---AAENGHKEVVKLLLSQGADPN 64
Query: 654 RQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
+ ++G T LH+A + E+V+ LL Q AD + D G TP LA + GH+E+
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEV 118
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 625 DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
++G AAE N + +K+++ G DV ++G T LH+A + E+V+ LL Q AD
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 685 VDKPDVHGWTPRDLADQQGHEEI 707
+ D G TP LA + GH+E+
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEV 85
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 94.4 bits (233), Expect = 3e-19, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 10/145 (6%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGD--- 625
AA G+++ V L++ AD N+ DSDG PL A GH+ V+KLL+ AD+N+ D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 626 ---VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQK 682
+ H AAE + E++K ++ G DV + ++G T LH A + E+V+ L+ +
Sbjct: 71 RTPLHH----AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 683 ADVDKPDVHGWTPRDLADQQGHEEI 707
ADV+ D G TP DLA + G+EE+
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEV 151
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 10/115 (8%)
Query: 599 LWEAMLGGHENVIKLLMENHADINSGD------VGHFACTAAEQNNLELLKEIVCYGGDV 652
L EA G+++ +K L+EN AD+N+ D + H AAE + E++K ++ G DV
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHH----AAENGHKEVVKLLISKGADV 63
Query: 653 TRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
+ ++G T LH A + E+V+ L+ + ADV+ D G TP A + GH+E+
Sbjct: 64 NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 118
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 625 DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
++G AAE N + +K+++ G DV ++G T LH A + E+V+ L+ + AD
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD 62
Query: 685 VDKPDVHGWTPRDLADQQGHEEI 707
V+ D G TP A + GH+E+
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEV 85
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 92.4 bits (228), Expect = 9e-19, Method: Composition-based stats.
Identities = 54/146 (36%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N+ D DG PL A GH ++++L++ AD+N+ D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 629 FACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVD 686
+ AA + +LE+++ ++ G DV + +G T LH+A E ++EIV LL ADV+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 687 KPDVHGWTPRDLADQQGHEEIKCIFQ 712
D G TP DLA ++GHE+I + Q
Sbjct: 129 AQDKFGKTPFDLAIREGHEDIAEVLQ 154
Score = 76.3 bits (186), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 599 LWEAMLGGHENVIKLLMENHADINSGDVGHFAC--TAAEQNNLELLKEIVCYGGDVTRQR 656
L EA G ++ +++LM N AD+N+ D + AA + +LE+++ ++ G DV +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 657 NNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI-KCIFQSCK 715
+G T LH+A E ++EIV LL ADV+ D G+TP LA ++GH EI + + ++
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 716 ETKAQ 720
+ AQ
Sbjct: 126 DVNAQ 130
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 625 DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
D+G AA + ++ ++ G DV + +G T LH+A E ++EIV LL AD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 685 VDKPDVHGWTPRDLADQQGHEEI 707
V+ D G+TP LA ++GH EI
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEI 83
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N+ D DG PL A GH ++++L++ AD+N+ D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 629 FACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVD 686
+ AA + +LE+++ ++ G DV + +G T LH+A E ++EIV LL ADV+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 687 KPDVHGWTPRDLADQQGHEEIKCIFQ 712
D G TP DLA G+E+I + Q
Sbjct: 129 AQDKFGKTPFDLAIDNGNEDIAEVLQ 154
Score = 76.3 bits (186), Expect = 8e-14, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 599 LWEAMLGGHENVIKLLMENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGGDVTRQR 656
L EA G ++ +++LM N AD+N+ D + AA + +LE+++ ++ G DV +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 657 NNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI-KCIFQSCK 715
+G T LH+A E ++EIV LL ADV+ D G+TP LA ++GH EI + + ++
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 716 ETKAQ 720
+ AQ
Sbjct: 126 DVNAQ 130
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 625 DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
D+G AA + ++ ++ G DV + +G T LH+A E ++EIV LL AD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 685 VDKPDVHGWTPRDLADQQGHEEI 707
V+ D G+TP LA ++GH EI
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEI 83
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 87.0 bits (214), Expect = 4e-17, Method: Composition-based stats.
Identities = 54/147 (36%), Positives = 72/147 (48%), Gaps = 31/147 (21%)
Query: 561 NGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHAD 620
NGRT LH+AA G V LLL+ AD N+ D +G PL A GH V+KLL+E AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 621 INSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLD 680
+N+ D NG T LH+A ++E+V+ LL+
Sbjct: 61 VNAKD-------------------------------KNGRTPLHLAARNGHLEVVKLLLE 89
Query: 681 QKADVDKPDVHGWTPRDLADQQGHEEI 707
ADV+ D +G TP LA + GH E+
Sbjct: 90 AGADVNAKDKNGRTPLHLAARNGHLEV 116
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 59/128 (46%), Gaps = 31/128 (24%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D NGRT LH+AA G V LLL+ AD N+ D +G PL A GH V+KLL+
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 616 ENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIV 675
E AD+N+ D NG T LH+A ++E+V
Sbjct: 89 EAGADVNAKD-------------------------------KNGRTPLHLAARNGHLEVV 117
Query: 676 RFLLDQKA 683
+ LL+ A
Sbjct: 118 KLLLEAGA 125
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 633 AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHG 692
AA +LE++K ++ G DV + NG T LH+A ++E+V+ LL+ ADV+ D +G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 693 WTPRDLADQQGH-EEIKCIFQSCKETKAQ 720
TP LA + GH E +K + ++ + A+
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGADVNAK 97
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 87.0 bits (214), Expect = 4e-17, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N+ D+DG PL A GH ++++L++N AD+N+ D+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 629 FACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVD 686
AA +LE+++ ++ +G DV N+G T LH+A ++EIV LL ADV+
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 687 KPDVHGWTPRDLADQQGHEEIKCIFQ 712
D G T D++ G+E++ I Q
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFAC--TAAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ D + AA +LE+++ ++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
DV G T LH+A ++EIV LL ADV+ D G TP LA + GH EI
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEI 128
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N SD G T LH+AA+ G V +LL + AD N+ D+DG+ PL A GH ++++L+
Sbjct: 74 NASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Query: 616 ENHADINSGD-VGHFACTAAEQNNLELLKEIV 646
++ AD+N+ D G A + N E L EI+
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/149 (34%), Positives = 87/149 (58%), Gaps = 5/149 (3%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N++D+ G PL A + GH ++++L+++ AD+++ DV
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 629 FACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVD 686
F AA +LE+++ ++ YG DV GST LH+A E ++EIV LL ADV+
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 687 KPDVHGWTPRDLADQQGHEEIKCIFQSCK 715
D G T D++ G+E++ +SC+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLA---KSCR 166
Score = 69.3 bits (168), Expect = 8e-12, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 8/126 (6%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N DN G T LH+AA G V +LL + AD ++ D G PL A + GH ++++L+
Sbjct: 41 NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 616 ENHADINSGDVG-----HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCED 670
+ AD+N+ D+ H AA++ +LE+++ ++ YG DV Q G TA +++
Sbjct: 101 KYGADVNAFDMTGSTPLHL---AADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Query: 671 NVEIVR 676
N ++ +
Sbjct: 158 NEDLAK 163
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 44/83 (53%)
Query: 625 DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
D+G AA + ++ ++ G DV N G T LH+A ++EIV LL AD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 685 VDKPDVHGWTPRDLADQQGHEEI 707
VD DV+G+TP LA GH EI
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEI 95
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 76/161 (47%), Gaps = 2/161 (1%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
PN + G T LHIAA +G VL LL+ EA + G PL A G V +LL
Sbjct: 106 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Query: 615 MENHADINSGDVGHFAC--TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNV 672
+E A N+ A NNL+++K ++ GG NG T LH+A ++ V
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 225
Query: 673 EIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQS 713
E+ R LL + V G TP LA Q+GH E+ + S
Sbjct: 226 EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 562 GRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADI 621
G T LH+AA G LLL+ +A PN+ +G PL A+ + +++KLL+
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Query: 622 NSGDVGHFAC--TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLL 679
+S + AA+QN +E+ + ++ YGG + G T LH+A E + E+V LL
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 265
Query: 680 DQKADVDKPDVHGWTPRDLADQQGHEEIKCIF 711
++A+ + + G TP L Q+GH + +
Sbjct: 266 SKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 3/202 (1%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P+ NG T LHIAA + LL Y N+ G PL A GH ++ LL
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Query: 615 MENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNV 672
+ A+ N G+ A++ ++ + ++ +G V G T LHVA N+
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI 324
Query: 673 EIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETKAQSIISVAERPQQE 732
++V+FLL +ADV+ G++P A QQGH +I + + + + S P
Sbjct: 325 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE-VSSDGTTPLAI 383
Query: 733 VHYLGRFTSEPAIRPITHEVSF 754
LG + ++ +T E SF
Sbjct: 384 AKRLGYISVTDVLKVVTDETSF 405
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 36/207 (17%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
PN S+ T LH+AA G LL +A N+ D PL A GH N++KLL
Sbjct: 40 PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 99
Query: 615 MENHADIN-SGDVGHFAC-TAAEQNNLE-----LLKEI--VC--------------YG-- 649
+EN+A+ N + GH AA + ++E L KE C YG
Sbjct: 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 159
Query: 650 --GDVTRQRN--------NGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLA 699
++ +R+ NG T LHVAV +N++IV+ LL + P +G+TP +A
Sbjct: 160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219
Query: 700 DQQGHEEI-KCIFQSCKETKAQSIISV 725
+Q E+ + + Q A+S+ V
Sbjct: 220 AKQNQVEVARSLLQYGGSANAESVQGV 246
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 4/143 (2%)
Query: 564 TALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINS 623
T LH+A+ G V LL A PN + PL A GH V K L++N A +N+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 624 ---GDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLD 680
D C AA + ++K ++ + G T LH+A E +VE V LL+
Sbjct: 76 KAKDDQTPLHC-AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 681 QKADVDKPDVHGWTPRDLADQQG 703
++A G+TP +A + G
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYG 157
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 638 NLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRD 697
+L ++K ++ G T LH+A + E+ ++LL KA V+ TP
Sbjct: 26 HLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH 85
Query: 698 LADQQGHEEI 707
A + GH +
Sbjct: 86 CAARIGHTNM 95
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 82.8 bits (203), Expect = 8e-16, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N+ D G+ PL A GH ++++L+++ AD+N+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 629 FACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVD 686
+ AA+ +LE+++ ++ YG DV Q G T LH+A ++EIV LL ADV+
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 687 KPDVHGWTPRDLADQQGHEEIKCIFQ 712
D G T D++ G+E++ I Q
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D+ G T LH+AA G V +LL + AD N+ D+DG PL A GH ++++L+
Sbjct: 41 NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLL 100
Query: 616 ENHADINSGDVGHFACT----AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDN 671
+ AD+N+ D + T AA++ +LE+++ ++ +G DV Q G TA +++ N
Sbjct: 101 KYGADVNAQDA--YGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Query: 672 VEIVRFL 678
++ L
Sbjct: 159 EDLAEIL 165
Score = 66.2 bits (160), Expect = 7e-11, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINS-GDVGHFAC-TAAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ D G AA + E+++ ++ +G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
DV + +G T LH+A ++EIV LL ADV+ D +G TP LA +GH EI
Sbjct: 72 DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEI 128
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N+ D DG PL A GH ++++L++ AD+N+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 629 FACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVD 686
+ AA + +LE+++ ++ G DV + +G T LH+A E ++EIV LL ADV+
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 687 KPDVHGWTPRDLADQQGHEEIKCIFQ 712
D G T D++ G+E++ I Q
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 77.0 bits (188), Expect = 4e-14, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 3/131 (2%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ D + AA + +LE+++ ++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI-KC 709
DV + +G T LH+A E ++EIV LL ADV+ D G+TP LA ++GH EI +
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 131
Query: 710 IFQSCKETKAQ 720
+ ++ + AQ
Sbjct: 132 LLKAGADVNAQ 142
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D++G+T LH+AA KG V +LL + AD N+ D G+ PL A L GH ++++L+
Sbjct: 41 NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLL 100
Query: 616 ENHADINSGDVGHFAC--TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVE 673
+N AD+N+ D F AA+ +LE+++ ++ YG DV Q G TA +++ N +
Sbjct: 101 KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 674 IVRFL 678
+ L
Sbjct: 161 LAEIL 165
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGD-VG 627
AA G ++ V +L+ AD N+ D G PL A + GH ++++L+++ AD+N+ D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 628 HFAC-TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVD 686
AA +LE+++ ++ G DV G T LH+A ++EIV LL ADV+
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 687 KPDVHGWTPRDLADQQGHEEIKCIFQ 712
D G T D++ G+E++ I Q
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVG-----HFACTAAEQNNLELLKEIVC 647
SD L EA G ++ +++LM N AD+N+ D H A A + +LE+++ ++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLA---AIKGHLEIVEVLLK 68
Query: 648 YGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
+G DV G T LH+A ++EIV LL ADV+ D +G+TP LA GH EI
Sbjct: 69 HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEI 128
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 8/149 (5%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVG- 627
AA G ++ V +L+ AD N+ D+ G+ PL A GH ++++L++N AD+N+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 628 ----HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKA 683
H A A++ +LE+++ ++ YG DV GST LH+A ++EIV LL A
Sbjct: 81 STPLHLA---AKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 684 DVDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
DV+ D G T D++ G+E++ I Q
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D G T LH+AA G V +LL AD N++D G+ PL A GH ++++L+
Sbjct: 41 NAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLL 100
Query: 616 ENHADINSGD-VGHFAC-TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVE 673
+ AD+N+ D +G AA+ +LE+++ ++ YG DV Q G TA +++ N +
Sbjct: 101 KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 674 IVRFL 678
+ L
Sbjct: 161 LAEIL 165
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT----AAEQNNLELLKEIVCY 648
SD L EA G ++ +++LM N AD+N+ D + T AA +LE+++ ++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDT--YGDTPLHLAARVGHLEIVEVLLKN 69
Query: 649 GGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
G DV +GST LH+A ++EIV LL ADV+ D G TP LA GH EI
Sbjct: 70 GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEI 128
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA+ G ++ V +L+ AD N+ D +G PL A G ++++L++N AD+N+ D
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 629 FACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVD 686
AA +LE+++ ++ +G DV G T LH+A +EIV LL ADV+
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 687 KPDVHGWTPRDLADQQGHEEIKCIFQ 712
D G T D++ QG E++ I Q
Sbjct: 133 AQDALGLTAFDISINQGQEDLAEILQ 158
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 599 LWEAMLGGHENVIKLLMENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGGDVTRQR 656
L EA G ++ +++LM N AD+N+ D AA LE+++ ++ G DV
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 657 NNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
+ G T LH+A + ++EIV LL ADV+ D GWTP LA G EI
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEI 120
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 79.3 bits (194), Expect = 8e-15, Method: Composition-based stats.
Identities = 47/117 (40%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGD-VGHFAC-TAAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ D +GH AA+ +LE+++ ++ YG
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
DV N G+T LH+A ++EIV LL ADV+ D G+TP LA GH EI
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEI 128
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N+ D G+ PL A GH ++++L++ AD+N+ D +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD--N 78
Query: 629 FACT----AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
+ T AA+ +LE+++ ++ +G DV + G T LH+A + ++EIV LL AD
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
Query: 685 VDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
V+ D G T D++ G+E++ I Q
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N +D G T LH+AA G V +LL Y AD N+ D+ G PL A GH ++++L+
Sbjct: 41 NATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLL 100
Query: 616 ENHADINSGDVGHFAC--TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVE 673
++ AD+N+ D F AA +LE+++ ++ YG DV Q G TA +++ N +
Sbjct: 101 KHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 674 IVRFL 678
+ L
Sbjct: 161 LAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 7/155 (4%)
Query: 562 GRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADI 621
GR L AA G ++ V +L+ AD N+ D+ G PL A GH ++++L+++ AD+
Sbjct: 15 GRKLLE-AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV 73
Query: 622 NSGDVGHFACT----AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRF 677
++ DV F T AA +LE+++ ++ G DV ++G T LH+A +EIV
Sbjct: 74 DASDV--FGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEV 131
Query: 678 LLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
LL ADV+ D G T D++ G+E++ I Q
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT----AAEQNNLELLKEIVCY 648
SD L EA G ++ +++LM N AD+N+ D + T AA +LE+++ ++ +
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAAD--NTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 649 GGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
G DV G T LH+A ++EIV LL ADV+ D G TP LA + G+ EI
Sbjct: 70 GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEI 128
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 77.8 bits (190), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 6/148 (4%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N+ D G PL A GH ++++L++N AD+N+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD--S 78
Query: 629 FACT----AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
T AA++ +LE+++ ++ G DV +NG T LH+A ++EIV LL AD
Sbjct: 79 LGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Query: 685 VDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
V+ D G T D++ G+E++ I Q
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT----AAEQNNLELLKEIVCY 648
SD L EA G ++ +++LM N AD+N+ D H T AA +LE+++ ++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNASD--HVGWTPLHLAAYFGHLEIVEVLLKN 69
Query: 649 GGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
G DV + G T LH+A ++E+V LL ADV+ D +G+TP LA GH EI
Sbjct: 70 GADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEI 128
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N +D+NG T LH+AA+ G V +LL + AD N+ D G ++ G+E++ ++L
Sbjct: 107 NANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 616 E 616
+
Sbjct: 167 K 167
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 77.0 bits (188), Expect = 4e-14, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N+ D G PL A GH ++++L++N AD+N+ D
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT-- 78
Query: 629 FACT----AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
T AA +LE+++ ++ G DV + +NG T LH+A ++EIV LL AD
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138
Query: 685 VDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
V+ D G T D++ G+E++ I Q
Sbjct: 139 VNAQDKFGKTAFDISINNGNEDLAEILQ 166
Score = 69.7 bits (169), Expect = 7e-12, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ DV + AA +LE+++ ++ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
DV GST LH+A ++EIV LL ADV+ D +G TP LA +GH EI
Sbjct: 72 DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEI 128
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N +D G T LH+AA G V +LL AD N+ D+ G+ PL A GH ++++L+
Sbjct: 41 NAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLL 100
Query: 616 ENHADINSGDVGHFAC--TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVE 673
+N AD+N+ D AA + +LE+++ ++ YG DV Q G TA +++ N +
Sbjct: 101 KNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Query: 674 IVRFL 678
+ L
Sbjct: 161 LAEIL 165
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D+NG T LH+AA++G V +LL Y AD N+ D G ++ G+E++ ++L
Sbjct: 107 NAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQ 166
Query: 616 E 616
+
Sbjct: 167 K 167
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 76.3 bits (186), Expect = 7e-14, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N+ D+ G PL A GH ++++L++N AD+N+ D H
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD--H 78
Query: 629 FACT----AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
T AA +LE+++ ++ G DV G T LH+A ++EIV LL AD
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Query: 685 VDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
V+ D G T D++ G+E++ I Q
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ D + AA +LE+++ ++ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
DV + G T L +A ++EIV LL ADV+ D+ G TP LA GH EI
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEI 128
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N +D G T LH+AA G V +LL AD N+ D G ++ G+E++ ++L
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 616 E 616
+
Sbjct: 167 K 167
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 76.3 bits (186), Expect = 7e-14, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVG- 627
AA G ++ V +L+ AD N+ D G PL A GH ++++L+ N AD+N+ D
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 628 ----HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKA 683
H A A +LE+++ ++ YG DV + G T L++A ++EIV LL A
Sbjct: 69 TTPLHLA---ASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 684 DVDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
DV+ D G T D++ G+E++ I Q
Sbjct: 126 DVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 599 LWEAMLGGHENVIKLLMENHADINSGDVGHFACT----AAEQNNLELLKEIVCYGGDVTR 654
L EA G ++ +++LM N AD N+ D H+ T AA +LE+++ ++ G DV
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYD--HYGRTPLHMAAAVGHLEIVEVLLRNGADVNA 63
Query: 655 QRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
NG+T LH+A ++EIV LL ADV+ D G TP LA GH EI
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEI 116
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D NG T LH+AAS G V +LL Y AD N+ D+ G PL+ A GH ++++L+
Sbjct: 62 NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 616 ENHADINSGD 625
++ AD+N+ D
Sbjct: 122 KHGADVNAQD 131
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N+ D G PL A GH ++++L++N AD+N+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD--S 78
Query: 629 FACT----AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
T AA + +LE+++ ++ G DV ++G T LH+A ++EIV LL AD
Sbjct: 79 LGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138
Query: 685 VDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
V+ D G T D++ G+E++ I Q
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ D + AA +LE+++ ++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
DV + + G T LH+A ++EIV LL ADV+ D HG+TP LA ++GH EI
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEI 128
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D+ G T LH+AA +G V +LL AD N+ DS G PL A GH ++++L+
Sbjct: 74 NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL 133
Query: 616 ENHADINSGD-VGHFACTAAEQNNLELLKEIV 646
+N AD+N+ D G A + N E L EI+
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 37.0 bits (84), Expect = 0.049, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N SD++G T LH+AA +G V +LL AD N+ D G ++ G+E++ ++L
Sbjct: 107 NASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Query: 616 E 616
+
Sbjct: 167 K 167
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 31/157 (19%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N +D +G T LH+AA+ G V +LL + AD N+ID G+ PL A L GH ++++L+
Sbjct: 41 NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLL 100
Query: 616 ENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIV 675
++ AD+N+ D G T LH+A ++EIV
Sbjct: 101 KHGADVNAVDTW-------------------------------GDTPLHLAAIMGHLEIV 129
Query: 676 RFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
LL ADV+ D G T D++ G+E++ I Q
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ D AA +LE+++ ++ +G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
DV GST LH+A ++EIV LL ADV+ D G TP LA GH EI
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N+ D G PL + GH +I++L++ AD+N+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 629 FACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVD 686
+ AA + +LE+++ ++ YG DV G T LH+A + ++EIV LL ADV+
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 687 KPDVHGWTPRDLADQQGHEEIKCIFQ 712
D G T D++ G+E++ I Q
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT----AAEQNNLELLKEIVCY 648
SD L EA G ++ +++LM N AD+N+ D F T +LE+++ ++ Y
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAND--WFGITPLHLVVNNGHLEIIEVLLKY 69
Query: 649 GGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
DV +G T LH+A ++EIV LL ADV+ D G+TP LA + GH EI
Sbjct: 70 AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEI 128
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N +D G T LH+ + G + +LL Y AD N+ D G PL A GH ++++L+
Sbjct: 41 NANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLL 100
Query: 616 ENHADINSGDVGHFAC--TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVE 673
+ AD+N+ D + AAE +LE+++ ++ YG DV Q G TA +++ N +
Sbjct: 101 KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 674 IVRFL 678
+ L
Sbjct: 161 LAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N+ D+ G PL A GH ++++L+++ AD+N+ D+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI-- 78
Query: 629 FACT----AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
T AA +LE+++ ++ +G DV G T LH+A ++EIV LL AD
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 685 VDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
V+ D G T D++ G+E++ I Q
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ D AA +LE+++ ++ +G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
DV GST LH+A ++EIV LL ADV+ D G TP LA GH EI
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGD-VGHFAC-TAAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ D G+ AA+ ++LE+++ ++ +G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCI 710
DV N+GST LH+A ++EIV LL ADV+ D G T D++ G+E++ I
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 711 FQ 712
Q
Sbjct: 132 LQ 133
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N +D G T LH+AA V +LL + AD N+ D+DG+ PL A L GH ++++L+
Sbjct: 41 NANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 616 ENHADINSGD-VGHFACTAAEQNNLELLKEIV 646
++ AD+N+ D G A + N E L EI+
Sbjct: 101 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 36.6 bits (83), Expect = 0.062, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N DN+G T LH+AA G V +LL + AD N+ D G ++ G+E++ ++L
Sbjct: 74 NAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Query: 616 E 616
+
Sbjct: 134 K 134
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ D AA+ +LE+++ ++ YG
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCI 710
DV + N G T LH+A ++EIV LL ADV+ D G T D++ G+E++ I
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 711 FQ 712
Q
Sbjct: 132 LQ 133
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D +G T LH+AA G V +LL Y AD N+ D+ G PL A + GH ++++L+
Sbjct: 41 NALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLL 100
Query: 616 ENHADINSGD-VGHFACTAAEQNNLELLKEIV 646
++ AD+N+ D G A + N E L EI+
Sbjct: 101 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 36.6 bits (83), Expect = 0.068, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N DN G T LH+AA +G V +LL + AD N+ D G ++ G+E++ ++L
Sbjct: 74 NAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Query: 616 E 616
+
Sbjct: 134 K 134
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDV-GHFAC-TAAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++L N AD+N+ D GH AA +LE+++ ++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCI 710
DV N G T LH+A D++EIV LL ADV+ D G T D++ G+E++ I
Sbjct: 72 DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 711 FQ 712
Q
Sbjct: 132 LQ 133
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADIN-SGDVG 627
AA G ++ V +L AD N+ D G+ PL A + GH ++++L++N AD+N +G+ G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 628 HFAC-TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFL 678
AA ++LE+++ ++ +G DV Q G TA +++ N ++ L
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N +D G T LH+AA G V +LL AD N+ + G PL A H ++++L+
Sbjct: 41 NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLL 100
Query: 616 ENHADINSGD-VGHFACTAAEQNNLELLKEIV 646
++ AD+N+ D G A + N E L EI+
Sbjct: 101 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N + N GRT LH+AA V +LL + AD N+ D G ++ G+E++ ++L
Sbjct: 74 NATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Query: 616 E 616
+
Sbjct: 134 K 134
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N + +G + LH+AA G + + LLL + A+ + ++D VPL A GH V+K L+
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 616 ENHADINSGDVGH-----FACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCED 670
+++A N D+ +AC+ EL+ ++ +G + N G+TALH AV E
Sbjct: 140 DSNAKPNKKDLSGNTPLIYACSGGHH---ELVALLLQHGASINASNNKGNTALHEAVIEK 196
Query: 671 NVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGH-EEIKCIFQSCKETKAQSIISVAERP 729
+V +V LL A V + T D A+Q E+ + SC S+ VAE
Sbjct: 197 HVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSC----VASLDDVAETD 252
Query: 730 QQE 732
++E
Sbjct: 253 RKE 255
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
PN+ D +G T L A S G V LLL + A N+ ++ GN L EA++ H V++LL
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL 204
Query: 615 MENHADINS-GDVGHFACTAAEQNN--LELLK 643
+ + A + A AEQN+ +ELL+
Sbjct: 205 LLHGASVQVLNKRQRTAVDCAEQNSKIMELLQ 236
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 649 GGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGH-EEI 707
G +VT Q +GS+ LHVA +++ LL A+ + P LA QQGH + +
Sbjct: 78 GVNVTSQ--DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 708 KCIFQS 713
KC+ S
Sbjct: 136 KCLLDS 141
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 6/148 (4%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N+ D+ G + LHIAAS G + V LL A N+++ +G PL A + +L+
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 616 ENHADINSGDVGHFACT----AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDN 671
E A+ ++ D H+ T AA + NL+++ ++ Y Q G+T LH+A E+
Sbjct: 127 EGGANPDAKD--HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 184
Query: 672 VEIVRFLLDQKADVDKPDVHGWTPRDLA 699
VE + L+ Q A + + TP +A
Sbjct: 185 VEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 631 CTAAEQNNLELLKE-IVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPD 689
C A LE LKE I+ TR + TALH A + EIV FLL V+ D
Sbjct: 11 CNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 70
Query: 690 VHGWTPRDLADQQGHEEI 707
GW+P +A G +EI
Sbjct: 71 DAGWSPLHIAASAGRDEI 88
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 55/147 (37%), Gaps = 31/147 (21%)
Query: 558 SDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMEN 617
+D + RTALH A S G V LL N D G PL A G + ++K L+
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 618 HADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRF 677
A +N+ + NG T LH A ++ EI
Sbjct: 96 GAQVNAVN-------------------------------QNGCTPLHYAASKNRHEIAVM 124
Query: 678 LLDQKADVDKPDVHGWTPRDLADQQGH 704
LL+ A+ D D + T A +G+
Sbjct: 125 LLEGGANPDAKDHYEATAMHRAAAKGN 151
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P+ D+ TA+H AA+KG+ + +LL Y+A N D++GN PL A KLL
Sbjct: 132 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 191
Query: 615 MENHADI 621
+ A I
Sbjct: 192 VSQGASI 198
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 615 MENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEI 674
+ D +S H+AC+A +E L ++ G V + + G + LH+A EI
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQL---GVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 675 VRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
V+ LL + A V+ + +G TP A + EI
Sbjct: 89 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 121
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 57/123 (46%), Gaps = 31/123 (25%)
Query: 561 NGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHAD 620
NGRT LH+AA G V LLL+ AD N+ D +G PL A GH V+KLL+E AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 621 INSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLD 680
+N+ D NG T LH+A ++E+V+ LL+
Sbjct: 61 VNAKD-------------------------------KNGRTPLHLAARNGHLEVVKLLLE 89
Query: 681 QKA 683
A
Sbjct: 90 AGA 92
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 633 AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHG 692
AA +LE++K ++ G DV + NG T LH+A ++E+V+ LL+ ADV+ D +G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 693 WTPRDLADQQGHEEI 707
TP LA + GH E+
Sbjct: 69 RTPLHLAARNGHLEV 83
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 37/64 (57%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D NGRT LH+AA G V LLL+ AD N+ D +G PL A GH V+KLL+
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 616 ENHA 619
E A
Sbjct: 89 EAGA 92
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 658 NGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGH-EEIKCIFQSCKE 716
NG T LH+A ++E+V+ LL+ ADV+ D +G TP LA + GH E +K + ++ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 717 TKAQ 720
A+
Sbjct: 61 VNAK 64
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 66.2 bits (160), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ D AA++ +LE+++ ++ +G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCI 710
DV + G T LH+A ++EIV LL+ ADV+ D G T D++ G+E++ I
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 711 FQ 712
Q
Sbjct: 132 LQ 133
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D+ G T LH+AA +G V +LL + AD N+ DS G PL A GH ++++L+
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLL 100
Query: 616 ENHADINSGD-VGHFACTAAEQNNLELLKEIV 646
E AD+N+ D G A + N E L EI+
Sbjct: 101 EYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVG- 627
A G ++ V +L+ AD N++D G PL A GH ++++L+++ AD+N+ D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 628 ----HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFL 678
H A T +LE+++ ++ YG DV Q G TA +++ N ++ L
Sbjct: 81 RTPLHLAATVG---HLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N SD+ GRT LH+AA+ G V +LL+Y AD N+ D G ++ G+E++ ++L
Sbjct: 74 NASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Query: 616 E 616
+
Sbjct: 134 K 134
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ D AA++ +LE+++ ++ +G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCI 710
DV + G T LH+A ++EIV LL+ ADV+ D G T D++ G+E++ I
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 711 FQ 712
Q
Sbjct: 132 LQ 133
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVG- 627
A G ++ V +L+ AD N++D G PL A GH ++++L+++ AD+N+ D+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 628 ----HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFL 678
H A T +LE+++ ++ YG DV Q G TA +++ N ++ L
Sbjct: 81 RTPLHLAATVG---HLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D+ G T LH+AA +G V +LL + AD N+ D G PL A GH ++++L+
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLL 100
Query: 616 ENHADINSGD-VGHFACTAAEQNNLELLKEIV 646
E AD+N+ D G A + N E L EI+
Sbjct: 101 EYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D GRT LH+AA+ G V +LL+Y AD N+ D G ++ G+E++ ++L
Sbjct: 74 NARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Query: 616 E 616
+
Sbjct: 134 K 134
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGG 650
SD L EA G ++ +++LM N AD+N+ D AA++ +LE+++ ++ +G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 651 DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCI 710
DV G T LH+A ++EIV LL+ ADV+ D G T D++ G+E++ I
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 711 FQ 712
Q
Sbjct: 132 LQ 133
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVG- 627
A G ++ V +L+ AD N++D G PL A GH ++++L+++ AD+N+ D+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 628 ----HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFL 678
H A T +LE+++ ++ YG DV Q G TA +++ N ++ L
Sbjct: 81 RTPLHLAATVG---HLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D+ G T LH+AA +G V +LL + AD N+ D G PL A GH ++++L+
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLL 100
Query: 616 ENHADINSGD-VGHFACTAAEQNNLELLKEIV 646
E AD+N+ D G A + N E L EI+
Sbjct: 101 EYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N SD GRT LH+AA+ G V +LL+Y AD N+ D G ++ G+E++ ++L
Sbjct: 74 NASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Query: 616 E 616
+
Sbjct: 134 K 134
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 6/148 (4%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N+ D+ G + LHIAAS G + V LL A N+++ +G PL A + +L+
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 616 ENHADINSGDVGHFACT----AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDN 671
E A+ ++ D H+ T AA + NL+++ ++ Y Q G+T LH+A E+
Sbjct: 127 EGGANPDAKD--HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 672 VEIVRFLLDQKADVDKPDVHGWTPRDLA 699
VE +FL+ Q A + + TP +A
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 631 CTAAEQNNLELLKE-IVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPD 689
C A L+ LKE I+ TR + TALH A + EIV FLL V+ D
Sbjct: 11 CNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 70
Query: 690 VHGWTPRDLADQQGHEEI 707
GW+P +A G +EI
Sbjct: 71 DAGWSPLHIAASAGXDEI 88
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 53/146 (36%), Gaps = 31/146 (21%)
Query: 558 SDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMEN 617
+D + RTALH A S G V LL N D G PL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL------------------ 77
Query: 618 HADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRF 677
H A +A E++K ++ G V NG T LH A ++ EI
Sbjct: 78 ----------HIAASAGXD---EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 678 LLDQKADVDKPDVHGWTPRDLADQQG 703
LL+ A+ D D + T A +G
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKG 150
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPL 599
P+ D+ TA+H AA+KG+ V +LL Y+A N D++GN PL
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL 176
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 620 DINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLL 679
D +S H+AC+A +E L ++ G V + + G + LH+A EIV+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQL---GVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 680 DQKADVDKPDVHGWTPRDLADQQGHEEIKCIF 711
+ A V+ + +G TP A + EI +
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 6/148 (4%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N+ D+ G + LHIAAS G + V LL A N+++ +G PL A + +L+
Sbjct: 68 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 127
Query: 616 ENHADINSGDVGHFACT----AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDN 671
E A+ ++ D H+ T AA + NL+++ ++ Y Q G+T LH+A E+
Sbjct: 128 EGGANPDAKD--HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 185
Query: 672 VEIVRFLLDQKADVDKPDVHGWTPRDLA 699
VE + L+ Q A + + TP +A
Sbjct: 186 VEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 629 FACTAAEQNNLELLKE-IVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDK 687
C A LE LKE I+ TR + TALH A + EIV FLL V+
Sbjct: 10 MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 69
Query: 688 PDVHGWTPRDLADQQGHEEI 707
D GW+P +A G +EI
Sbjct: 70 KDDAGWSPLHIAASAGRDEI 89
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 55/147 (37%), Gaps = 31/147 (21%)
Query: 558 SDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMEN 617
+D + RTALH A S G V LL N D G PL A G + ++K L+
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 618 HADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRF 677
A +N+ + NG T LH A ++ EI
Sbjct: 97 GAQVNAVN-------------------------------QNGCTPLHYAASKNRHEIAVM 125
Query: 678 LLDQKADVDKPDVHGWTPRDLADQQGH 704
LL+ A+ D D + T A +G+
Sbjct: 126 LLEGGANPDAKDHYEATAMHRAAAKGN 152
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPL 599
P+ D+ TA+H AA+KG+ + +LL Y+A N D++GN PL
Sbjct: 133 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPL 177
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 628 HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDK 687
H+AC+A +E L ++ G V + + G + LH+A EIV+ LL + A V+
Sbjct: 46 HWACSAGHTEIVEFLLQL---GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 688 PDVHGWTPRDLADQQGHEEIKCIF 711
+ +G TP A + EI +
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVML 126
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 6/148 (4%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N+ D+ G + LHIAAS G + V LL A N+++ +G PL A + +L+
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 616 ENHADINSGDVGHFACT----AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDN 671
E A+ ++ D H+ T AA + NL+++ ++ Y Q G+T LH+A E+
Sbjct: 127 EGGANPDAKD--HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 672 VEIVRFLLDQKADVDKPDVHGWTPRDLA 699
VE +FL+ Q A + + TP +A
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 631 CTAAEQNNLELLKE-IVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPD 689
C A L+ LKE I+ TR + TALH A + EIV FLL V+ D
Sbjct: 11 CNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 70
Query: 690 VHGWTPRDLADQQGHEEI 707
GW+P +A G +EI
Sbjct: 71 DAGWSPLHIAASAGRDEI 88
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 53/146 (36%), Gaps = 31/146 (21%)
Query: 558 SDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMEN 617
+D + RTALH A S G V LL N D G PL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL------------------ 77
Query: 618 HADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRF 677
H A +A E++K ++ G V NG T LH A ++ EI
Sbjct: 78 ----------HIAASAGRD---EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 678 LLDQKADVDKPDVHGWTPRDLADQQG 703
LL+ A+ D D + T A +G
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKG 150
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPL 599
P+ D+ TA+H AA+KG+ V +LL Y+A N D++GN PL
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL 176
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 620 DINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLL 679
D +S H+AC+A +E L ++ G V + + G + LH+A EIV+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQL---GVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 680 DQKADVDKPDVHGWTPRDLADQQGHEEIKCIF 711
+ A V+ + +G TP A + EI +
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 70/152 (46%), Gaps = 5/152 (3%)
Query: 559 DNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENH 618
D G T+LH+AA + LLD AD NS D+ G PL A+ V ++L+ N
Sbjct: 48 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR 107
Query: 619 ADINSGDVGHFACT----AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEI 674
A N H T AA ++++++ D+ N+G TALH A +N E
Sbjct: 108 A-TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEA 166
Query: 675 VRFLLDQKADVDKPDVHGWTPRDLADQQGHEE 706
V LL A+ D D TP LA ++G E
Sbjct: 167 VNILLMHHANRDAQDDKDETPLFLAAREGSYE 198
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 3/155 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEA-DPNSIDSDGNVPLWEAMLGGHENVIKLL 614
N DN GRT LH A + + +LL A + N+ DG PL A E +++ L
Sbjct: 78 NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 137
Query: 615 MENHADINSGD-VGHFACT-AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNV 672
+ ADIN+ D G A AA NN E + ++ + + Q + T L +A E +
Sbjct: 138 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY 197
Query: 673 EIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
E + LLD A+ + D PRD+A ++ H +I
Sbjct: 198 EASKALLDNFANREITDHMDRLPRDVASERLHHDI 232
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSID-----SDGNVPLWEAMLGGHEN 609
P D +G+TA H+A S C+ LLD A P ++D DG L A+ +
Sbjct: 72 PMALDRHGQTAAHLACEHRSPTCLRALLDSAA-PGTLDLEARNYDGLTALHVAVNTECQE 130
Query: 610 VIKLLMENHADINSGDVGHFACT---AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVA 666
++LL+E ADI++ D+ A E N+L +++ ++ +G +V Q +GS+ALH A
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190
Query: 667 VCEDNVEIVRFLLDQKADVDKPDVHGWTP 695
+ +VR L+ AD + H TP
Sbjct: 191 SGRGLLPLVRTLVRSGADSSLKNCHNDTP 219
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGD-VG----HFACTAAEQNNLELLKEIVC 647
SD L EA G ++ +++LM N AD+N+ D VG H A A ++LE+++ ++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLA---AMNDHLEIVEVLLK 68
Query: 648 YGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
G DV G T LH+ ++EIV LL ADV+ D G T D++ G+E++
Sbjct: 69 NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 708 KCIFQ 712
I Q
Sbjct: 129 AEILQ 133
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D G T LH+AA V +LL AD N+ID+ G PL + GH ++++L+
Sbjct: 41 NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLL 100
Query: 616 ENHADINSGD-VGHFACTAAEQNNLELLKEIV 646
++ AD+N+ D G A + N E L EI+
Sbjct: 101 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D G T LH+ A G V +LL + AD N+ D G ++ G+E++ ++L
Sbjct: 74 NAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Query: 616 E 616
+
Sbjct: 134 K 134
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEA-DPNSIDSDGNVPLWEAMLGGHENVIKLL 614
N DN GRT LH A S ++ +L+ A D ++ DG PL A E +++ L
Sbjct: 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143
Query: 615 MENHADINS-GDVGHFAC-----TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVC 668
+ +HAD+N+ D+G A + LLK G + Q N T L +A
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN----GANKDMQNNREETPLFLAAR 199
Query: 669 EDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
E + E + LLD A+ D D PRD+A ++ H +I
Sbjct: 200 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 238
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 11/156 (7%)
Query: 559 DNNGRTALHIAASKGSENCVLLLLDYEA-DPNSIDSDGNVPLWEAMLGGHENVIKLLMEN 617
DN GRT LH A S ++ +LL A D ++ DG PL A E +++ L+ +
Sbjct: 52 DNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINS 111
Query: 618 HADINS-GDVGHFAC-----TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDN 671
HAD+N+ D+G A + LLK G + Q N T L +A E +
Sbjct: 112 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN----GANKDMQNNKEETPLFLAAREGS 167
Query: 672 VEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
E + LLD A+ D D PRD+A ++ H +I
Sbjct: 168 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 203
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEA-DPNSIDSDGNVPLWEAMLGGHENVIKLL 614
N DN GRT LH A S ++ +L+ A D ++ DG PL A E +++ L
Sbjct: 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143
Query: 615 MENHADINS-GDVGHFAC-----TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVC 668
+ +HAD+N+ D+G A + LLK G + Q N T L +A
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN----GANKDMQNNREETPLFLAAR 199
Query: 669 EDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
E + E + LLD A+ D D PRD+A ++ H +I
Sbjct: 200 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 238
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEA-DPNSIDSDGNVPLWEAMLGGHENVIKLL 614
N DN GRT LH A S ++ +L+ A D ++ DG PL A E +++ L
Sbjct: 52 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 111
Query: 615 MENHADINS-GDVGHFAC-----TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVC 668
+ +HAD+N+ D+G A + LLK G + Q N T L +A
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN----GANKDMQNNREETPLFLAAR 167
Query: 669 EDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
E + E + LLD A+ D D PRD+A ++ H +I
Sbjct: 168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 206
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 13/149 (8%)
Query: 557 ESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLME 616
+ + G T LH A E+ V LLL + ADP +G P A + G ++KL +
Sbjct: 34 QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93
Query: 617 NHADINSGDVGHFAC--TAAEQNNLELLKEIVCYGGDVT----------RQRNNGSTALH 664
AD+N D F AA ++ LK + G +V R R G+TAL
Sbjct: 94 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153
Query: 665 VAVCEDNVEIVRFLLDQK-ADVDKPDVHG 692
A + +VE+++ LLD+ ADV+ D G
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMG 182
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 556 NESDNNGRTAL-HIAASKGS---ENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVI 611
N DN GR AL H S E LLLD+ AD N G PL A+ H ++
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235
Query: 612 KLLMEN-HADINSGDV-GHFACTAAEQNNLELLKEIVCYGGDVT 653
+ L+E H +IN D G A A + L+ + E++C G T
Sbjct: 236 QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 18/162 (11%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPN----------SIDSDGNVPLWEAMLG 605
NE D G TA AA G + L A+ N + G L +A
Sbjct: 99 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158
Query: 606 GHENVIKLLM-ENHADINSGD-VGH----FACTAAEQNNLELLKEIVC-YGGDVTRQRNN 658
GH V+K+L+ E AD+N+ D +G A +++ +++E + ++ +G DV +
Sbjct: 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 218
Query: 659 GSTALHVAVCEDNVEIVRFLLDQK-ADVDKPDVHGWTPRDLA 699
G T L +AV + ++ +V+ LL+Q+ +++ D G T LA
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260
Score = 37.4 bits (85), Expect = 0.040, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 609 NVIKLLMENHADINSGDVG------HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTA 662
++++ L+E A++N + H A + ++ +ELL +G D ++ NG+T
Sbjct: 19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR---HGADPVLRKKNGATP 75
Query: 663 LHVAVCEDNVEIVRFLLDQKADVDKPDVHGWT 694
+A +V++++ L + ADV++ D +G+T
Sbjct: 76 FLLAAIAGSVKLLKLFLSKGADVNECDFYGFT 107
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 564 TALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADIN- 622
+ LH A G +CV +LL + A N + +D + PL+ A + G + + LL+++ A +
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 97
Query: 623 SGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQK 682
D+ AA + ++E + ++ YGG++ + ++ T L++A V+ LL+
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 683 ADVDKPDVHGWTPRDLADQQGHEEIKCIF 711
ADV++ +P + EE+ C+
Sbjct: 158 ADVNQGKGQD-SPLHAVARTASEELACLL 185
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT----AAEQNNLELLKEIVCY 648
SD L EA G ++ +++LM N AD+N+ D + T A +LE+++ ++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKD--EYGLTPLYLATAHGHLEIVEVLLKN 69
Query: 649 GGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIK 708
G DV G T LH+A ++EI LL ADV+ D G T D++ G+E++
Sbjct: 70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLA 129
Query: 709 CIFQ 712
I Q
Sbjct: 130 EILQ 133
Score = 56.2 bits (134), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA G ++ V +L+ AD N+ D G PL+ A GH ++++L++N AD+N+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 629 FAC--TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFL 678
F AA +LE+ + ++ +G DV Q G TA +++ N ++ L
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D G T L++A + G V +LL AD N++D+ G PL A GH + ++L+
Sbjct: 41 NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL 100
Query: 616 ENHADINSGD-VGHFACTAAEQNNLELLKEIV 646
++ AD+N+ D G A + N E L EI+
Sbjct: 101 KHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 564 TALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADIN- 622
+ LH A G +CV +LL + A N + +D + PL+ A + G + + LL+++ A +
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153
Query: 623 SGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQK 682
D+ AA + ++E + ++ YGG++ + ++ T L++A V+ LL+
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 683 ADVDKPDVHGWTPRDLADQQGHEEIKCIF 711
ADV++ +P + EE+ C+
Sbjct: 214 ADVNQGKGQD-SPLHAVVRTASEELACLL 241
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 633 AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHG 692
AA+ + E +K+++ G DV + +G+T LH+A + EIV+ LL + ADV+ G
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75
Query: 693 WTPRDLADQQGHEEI 707
TP LA + GH EI
Sbjct: 76 NTPEHLAKKNGHHEI 90
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 36/72 (50%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N +G T LH+AA G V LLL AD N+ DGN P A GH ++KLL
Sbjct: 36 NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95
Query: 616 ENHADINSGDVG 627
AD+N+ G
Sbjct: 96 AKGADVNARSWG 107
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 561 NGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHAD 620
+G T LH AA G V LL AD N+ DGN PL A GH ++KLL+ AD
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 621 IN--SGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGST 661
+N S D A + + E++K + G DV R+ GS+
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN-ARSWGSS 109
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 594 DGNVPLWEAMLGGHENVIKLLMENHADIN--SGDVGHFACTAAEQNNLELLKEIVCYGGD 651
DGN PL A GH +K L+ AD+N S D AA+ + E++K ++ G D
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 652 VTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVD 686
V + +G+T H+A + EIV+ L + ADV+
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 658 NGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
+G+T LH A + E V+ LL + ADV+ G TP LA + GH EI
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI 57
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 633 AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHG 692
AA LE++++ V D ++ G TALH A+C N IV FL+ A+V+ PD HG
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 693 WTP 695
WTP
Sbjct: 88 WTP 90
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 556 NESDNNGR--TALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKL 613
N D GR T LH AA + V LL + AD ++ D G VPL A GH V +L
Sbjct: 36 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 95
Query: 614 LMENHADINSGDVGHFAC--TAAEQNNLELLKEIVCYGGDVTRQRNNGSTAL 663
L+++ A +N D+ F AA + E+ K ++ +G D T++ +G+T L
Sbjct: 96 LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 633 AAEQNNLELLKEIVCYGGDVTRQRNNG--STALHVAVCEDNVEIVRFLLDQKADVDKPDV 690
AA+ ++E +K++ C V + G ST LH A + V +V +LL ADV D
Sbjct: 17 AAKAGDVETVKKL-CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 691 HGWTPRDLADQQGHEEIKCIFQSCKETKAQSIISVAE----RPQQEVHYLGRF 739
G P A GH E+ + K ++++VA+ P E G++
Sbjct: 76 GGLVPLHNACSYGHYEVAELL-----VKHGAVVNVADLWKFTPLHEAAAKGKY 123
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 590 SIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT----AAEQNNLELLKEI 645
S +S+ + L EA G +K L + +N D+ T AA N + +++ +
Sbjct: 5 SGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYL 63
Query: 646 VCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHE 705
+ +G DV + G LH A + E+ L+ A V+ D+ +TP A +G
Sbjct: 64 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 123
Query: 706 EI 707
EI
Sbjct: 124 EI 125
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 556 NESDNNGR--TALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKL 613
N D GR T LH AA + V LL + AD ++ D G VPL A GH V +L
Sbjct: 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 93
Query: 614 LMENHADINSGDVGHFAC--TAAEQNNLELLKEIVCYGGDVTRQRNNGSTAL 663
L+++ A +N D+ F AA + E+ K ++ +G D T++ +G+T L
Sbjct: 94 LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 633 AAEQNNLELLKEIVCYGGDVTRQRNNG--STALHVAVCEDNVEIVRFLLDQKADVDKPDV 690
AA+ ++E +K++ C V + G ST LH A + V +V +LL ADV D
Sbjct: 15 AAKAGDVETVKKL-CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 691 HGWTPRDLADQQGHEEIKCIFQSCKETKAQSIISVAE----RPQQEVHYLGRF 739
G P A GH E+ + K ++++VA+ P E G++
Sbjct: 74 GGLVPLHNACSYGHYEVAELL-----VKHGAVVNVADLWKFTPLHEAAAKGKY 121
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 592 DSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT----AAEQNNLELLKEIVC 647
+S+ + L EA G +K L + +N D+ T AA N + +++ ++
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 648 YGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
+G DV + G LH A + E+ L+ A V+ D+ +TP A +G EI
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 556 NESDNNGR--TALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKL 613
N D GR T LH AA + V LL + AD ++ D G VPL A GH V +L
Sbjct: 38 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 97
Query: 614 LMENHADINSGDVGHFAC--TAAEQNNLELLKEIVCYGGDVTRQRNNGSTAL 663
L+++ A +N D+ F AA + E+ K ++ +G D T++ +G+T L
Sbjct: 98 LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 633 AAEQNNLELLKEIVCYGGDVTRQRNNG--STALHVAVCEDNVEIVRFLLDQKADVDKPDV 690
AA+ ++E +K++ C V + G ST LH A + V +V +LL ADV D
Sbjct: 19 AAKAGDVETVKKL-CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Query: 691 HGWTPRDLADQQGHEEIKCIFQSCKETKAQSIISVAE----RPQQEVHYLGRF 739
G P A GH E+ + K ++++VA+ P E G++
Sbjct: 78 GGLVPLHNACSYGHYEVAELL-----VKHGAVVNVADLWKFTPLHEAAAKGKY 125
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 592 DSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACT----AAEQNNLELLKEIVC 647
+S+ + L EA G +K L + +N D+ T AA N + +++ ++
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 648 YGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
+G DV + G LH A + E+ L+ A V+ D+ +TP A +G EI
Sbjct: 68 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 127
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 4/160 (2%)
Query: 564 TALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINS 623
T LH A +G + V+ L+ Y ADP+ ID +G + A GH +++ L+ D++
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Query: 624 GD---VGHFACTAAEQNNLELLKEIVCYGGDVT-RQRNNGSTALHVAVCEDNVEIVRFLL 679
D + A ++++ + ++ + V + + +TALH AV N ++ LL
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197
Query: 680 DQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETKA 719
+ A+VD ++ G + DLA Q+ + + Q ++ K
Sbjct: 198 EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 640 ELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDK--PDVHGWTPRD 697
E +E+V G DV + T LH A + +++V++ + + A VD+ D++ TP
Sbjct: 23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS-TPLH 81
Query: 698 LADQQGH 704
A +QGH
Sbjct: 82 WATRQGH 88
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 558 SDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMEN 617
SD T LH+AA V LLL + AD ++ D G VPL A GH V +LL+++
Sbjct: 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 618 HADINSGDVGHFAC--TAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVA 666
A +N+ D+ F AA +N +E+ ++ +G D T +G +A+ +A
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 566 LHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGD 625
L A S E + LL + ++ D + PL A +++LL+++ AD+++ D
Sbjct: 29 LEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD 88
Query: 626 VG-----HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLD 680
G H AC+ ELL + +G V T LH A ++ VE+ LL
Sbjct: 89 KGGLVPLHNACSYGHYEVTELL---LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145
Query: 681 QKADVDKPDVHGWTPRDLA 699
AD + HG + D+A
Sbjct: 146 HGADPTLVNCHGKSAVDMA 164
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
NE + + T LH+AA + + + +L + A N++DS G L A L GH +LL+
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300
Query: 616 ENHADINSGDVGHFACTAAEQNNLELLKEIV 646
+D + + F TAA+ N E +++I+
Sbjct: 301 SYGSDPSIISLQGF--TAAQMGN-EAVQQIL 328
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 645 IVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGH 704
+ C+ D + ST LH+A + V IV+ LL ADV D G P A GH
Sbjct: 49 VNCHASDGRK-----STPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH 103
Query: 705 EEI 707
E+
Sbjct: 104 YEV 106
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 608 ENVIKLLMENHADINSGDVG-----HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTA 662
+ V +LL+ A++N + H A A + +E+L + +G + + G TA
Sbjct: 227 KQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK---HGAKMNALDSLGQTA 283
Query: 663 LHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIF 711
LH A +++ R LL +D + G+T A Q G+E ++ I
Sbjct: 284 LHRAALAGHLQTCRLLLSYGSDPSIISLQGFT----AAQMGNEAVQQIL 328
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 33/158 (20%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P+ + G+TAL + GS L LL A PN D+ G P+ +A G + +K+L
Sbjct: 29 PDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL 87
Query: 615 MENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEI 674
+E +G DV G+ +H+AV E + +
Sbjct: 88 VE-------------------------------HGADVNVPDGTGALPIHLAVQEGHTAV 116
Query: 675 VRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
V FL + +D+ + D G TP +LA Q+G +++ I Q
Sbjct: 117 VSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ 153
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 33/158 (20%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P+ + G+TAL + GS L LL A PN D+ G P+ +A G + +K+L
Sbjct: 35 PDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL 93
Query: 615 MENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEI 674
+E +G DV G+ +H+AV E + +
Sbjct: 94 VE-------------------------------HGADVNVPDGTGALPIHLAVQEGHTAV 122
Query: 675 VRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
V FL + +D+ + D G TP +LA Q+G +++ I Q
Sbjct: 123 VSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ 159
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEA-DPNSIDSDGNVPLWEAMLGGHENVIKLL 614
N DN GRT LH A S ++ +L+ A D ++ DG PL A E +++ L
Sbjct: 85 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 144
Query: 615 MENHADINS-GDVGHFACT-AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNV 672
+ +HAD+N+ D+G A AA NN++ ++ G + Q N T L +A E +
Sbjct: 145 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 204
Query: 673 EIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
E + LLD A+ D D PRD+A ++ H +I
Sbjct: 205 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 239
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 33/158 (20%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P+ + G+TAL + GS L LL A PN D+ G P+ +A G + +K+L
Sbjct: 37 PDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVL 95
Query: 615 MENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEI 674
+E +G DV + GS +H+A+ E + +
Sbjct: 96 VE-------------------------------HGADVNALDSTGSLPIHLAIREGHSSV 124
Query: 675 VRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
V FL + +D+ D G TP +LA Q+G + + I Q
Sbjct: 125 VSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQ 161
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 33/158 (20%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P+ + G+TAL + GS L LL A PN D+ G P+ +A G + +K+L
Sbjct: 35 PDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVL 93
Query: 615 MENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEI 674
+E +G DV + GS +H+A+ E + +
Sbjct: 94 VE-------------------------------HGADVNALDSTGSLPIHLAIREGHSSV 122
Query: 675 VRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
V FL + +D+ D G TP +LA Q+G + + I Q
Sbjct: 123 VSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQ 159
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 13/149 (8%)
Query: 557 ESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLME 616
+ + G T LH A E+ V LLL + ADP +G P A + G ++KL +
Sbjct: 54 QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLS 113
Query: 617 NHADINSGDVGHFAC--TAAEQNNLELLKEIVCYGGDVT----------RQRNNGSTALH 664
AD+N D F AA ++ LK + G +V R R G+TAL
Sbjct: 114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 173
Query: 665 VAVCEDNVEIVRFLLDQ-KADVDKPDVHG 692
A + +VE+++ LLD+ ADV+ D G
Sbjct: 174 DAAEKGHVEVLKILLDEMGADVNACDNMG 202
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 556 NESDNNGRTAL-HIAASKGS---ENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVI 611
N DN GR AL H S E LLLD+ AD N G PL A+ H ++
Sbjct: 196 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 255
Query: 612 KLLMEN-HADINSGDV-GHFACTAAEQNNLELLKEIVCYGGDVT 653
+ L+E H +IN D G A A + L+ + E++C G T
Sbjct: 256 QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 299
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEA----------DPNSIDSDGNVPLWEAMLG 605
NE D G TA AA G + L A D + G L +A
Sbjct: 119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178
Query: 606 GHENVIKLLM-ENHADINSGD-VGH----FACTAAEQNNLELLKEIVC-YGGDVTRQRNN 658
GH V+K+L+ E AD+N+ D +G A +++ +++E + ++ +G DV +
Sbjct: 179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 238
Query: 659 GSTALHVAVCEDNVEIVRFLLDQK-ADVDKPDVHGWTPRDLA 699
G T L +AV + ++ +V+ LL+Q+ +++ D G T LA
Sbjct: 239 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 280
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 609 NVIKLLMENHADIN-SGDVG-----HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTA 662
++++ L+E A++N + G H A + ++ +ELL + +G D ++ NG+T
Sbjct: 39 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL---LRHGADPVLRKKNGATP 95
Query: 663 LHVAVCEDNVEIVRFLLDQKADVDKPDVHGWT 694
+A +V++++ L + ADV++ D +G+T
Sbjct: 96 FILAAIAGSVKLLKLFLSKGADVNECDFYGFT 127
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 625 DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
D+G AA + ++ ++ G DV + NGST LH+A ++E+V+ LL+ AD
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 685 VDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
V+ D G T D++ G+E++ I Q
Sbjct: 65 VNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGD-VG 627
AA G ++ V +L+ AD + D +G+ PL A GH V+KLL+E AD+N+ D G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 628 HFACTAAEQNNLELLKEIV 646
A + N E L EI+
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 37.4 bits (85), Expect = 0.037, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 559 DNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
D NG T LH+AA G V LLL+ AD N+ D G ++ G+E++ ++L
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 625 DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
D+G AA + ++ ++ G DV + NGST LH+A ++E+V+ LL+ AD
Sbjct: 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 685 VDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
V D G T D++ G+E++ I Q
Sbjct: 83 VXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGD-VG 627
AA G ++ V +L+ AD + D +G+ PL A GH V+KLL+E AD+ + D G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 628 HFACTAAEQNNLELLKEIV 646
A + N E L EI+
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 559 DNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
D NG T LH+AA G V LLL+ AD + D G ++ G+E++ ++L
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N +N +T LH+A LL DP D GN PL A G + +L
Sbjct: 36 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 95
Query: 616 EN------HADINSGDVGHFACT--AAEQNNLELLKEIVCYGGDVTRQRN-NGSTALHVA 666
++ H+ + + + C A+ L +++ +V G DV Q NG TALH+A
Sbjct: 96 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 155
Query: 667 VCEDNVEIVRFLLDQKADVDKPDVHGWTPRDL 698
V N ++V LL ADV++ G++P L
Sbjct: 156 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 655 QRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGH-EEIKCIFQS 713
Q N T LH+AV + EI LL D + D G TP LA +QG + + QS
Sbjct: 38 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 714 CKETKAQSII 723
C SI+
Sbjct: 98 CTTPHLHSIL 107
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 628 HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDK 687
H A + ++ +L ++ +V G++ +Q GSTALH DN E ++ LL KA ++
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI 233
Query: 688 PDVHGWTPRDLADQQGHEEIK 708
+ G TP D+A + HE +
Sbjct: 234 ANESGETPLDIAKRLKHEHCE 254
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 31/162 (19%)
Query: 558 SDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMEN 617
+++ G T LHIA+ KG V LL +DPN D G PL EA GH V++LL+++
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 618 HADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRF 677
A +N T QN+ + LH A +V+IV+
Sbjct: 66 KALVN---------TTGYQND----------------------SPLHDAAKNGHVDIVKL 94
Query: 678 LLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETKA 719
LL A + ++ G P D D + + + + + + + A
Sbjct: 95 LLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSA 136
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
PN D+ G T LH A + G V LLL ++A N+ + PL +A GH +++KLL
Sbjct: 36 PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
Query: 615 MENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTA 662
+ A N+ ++ F + + E +K ++ + ++N S+A
Sbjct: 96 LSYGASRNAVNI--FGLRPVDYTDDESMKSLL-----LLPEKNESSSA 136
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 85/174 (48%), Gaps = 5/174 (2%)
Query: 308 SRTRKFRDTIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRS 367
S +R++R+ ++ + Q +LP L++++L + ++R + ++ + ++IR
Sbjct: 5 SSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR--GKMFDERHIFREVSESIRQ 62
Query: 368 SISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGA 427
+++Y L+ V F G ++ + ++V+ ++ E F P + VI + + + G
Sbjct: 63 DVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGI 122
Query: 428 VDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTF 481
VD +++ +GV + G GEI +L ++ +V+ + L L+ F
Sbjct: 123 VD-IIMSDGV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHF 173
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N+ D G T L A++ G V LL++ ADP+ + + L A GG+ +++ LL+
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 616 ENHADINSGDV--GHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVC 668
E DIN D G A N+++ ++ ++ G D+T + ++G T + +AV
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA 144
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N+ D G T L A++ G V LL++ ADP+ + + L A GG+ +++ LL+
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 616 ENHADINSGDV--GHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVC 668
E DIN D G A N+++ ++ ++ G D+T + ++G T + +AV
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVA 144
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P +D G + LH+AA G + +LL ++ PL A GH N++++L
Sbjct: 27 PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 615 MENHADINSGDVGHFACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNV 672
+++ AD+N+ D+ A E N+ E+++ ++ YG DV Q TA +++ N
Sbjct: 87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE 146
Query: 673 EIVRFL 678
++ L
Sbjct: 147 DLAEIL 152
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 625 DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
D G A + E + ++ G D+ +G TALH A +DNV++V+FL++ A+
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 685 VDKPDVHGWTPRDLADQQGHEEI 707
+++PD GW P A G+ +I
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDI 121
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 561 NGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHAD 620
+G TALH+AA+KG + LL+ D N D DG PL A G E ++L+EN D
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257
Query: 621 INS-GDVGHFACTAAEQNNLELLKEI 645
+ + VG A A+++ L L+E+
Sbjct: 258 MEAVNKVGQTAFDVADEDILGYLEEL 283
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N+ DN G LH AAS G + L+ A +++S+G+ PL +
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL------DIAEEEAMEE 153
Query: 616 ENHADINSGDVGHFACTAAEQN-NLELLKEIVCYG--GDVTRQRNNGSTALHVAVCEDNV 672
++N V A E+ L ++ + G DV R +G TALHVA +
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV-RHAKSGGTALHVAAAKGYT 212
Query: 673 EIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEE 706
E+++ L+ + DV+ D GWTP A G EE
Sbjct: 213 EVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVG-----HFACTAAEQNNLELLKEIVC 647
DG V L G E V++LL E ADIN +V H AC +N++++K +V
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACI---DDNVDMVKFLVE 94
Query: 648 YGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDL 698
G ++ + N G LH A ++I +L+ Q A V + G TP D+
Sbjct: 95 NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N +N +T LH+A LL DP D GN PL A G + +L
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 98
Query: 616 EN------HADINSGDVGHFACT--AAEQNNLELLKEIVCYGGDVTRQRN-NGSTALHVA 666
++ H+ + + + C A+ L +++ +V G DV Q NG TALH+A
Sbjct: 99 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 158
Query: 667 VCEDNVEIVRFLLDQKADVDKPDVHGWTPRDL 698
V N ++V LL ADV++ G++P L
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 655 QRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGH-EEIKCIFQS 713
Q N T LH+AV + EI LL D + D G TP LA +QG + + QS
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100
Query: 714 CKETKAQSII 723
C SI+
Sbjct: 101 CTTPHLHSIL 110
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 32/148 (21%)
Query: 561 NGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHAD 620
N R+ LH AA G + +L+ A+ ++ D PL E
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLME------------------- 50
Query: 621 INSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLD 680
AAE N+LE +K ++ G V + GST LH+A + + E+V++LL
Sbjct: 51 ------------AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS 98
Query: 681 Q-KADVDKPDVHGWTPRDLADQQGHEEI 707
+ DV+ D GWTP A + H ++
Sbjct: 99 NGQMDVNCQDDGGWTPMIWATEYKHVDL 126
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
Query: 563 RTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMEN-HADI 621
RT L AA V L+ A + D++G+ L A GH V++ L+ N D+
Sbjct: 45 RTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 622 NSGDVGHFACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLL 679
N D G + A E +++L+K ++ G D+ + N + LH A V+I LL
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164
Query: 680 DQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQS 713
K D+ ++HG +P +A ++ + +F S
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS 198
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
Query: 559 DNNGRTALHIAASKGSENCVLLLL-DYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMEN 617
D G T LH+AA KG V LL + + D N D G P+ A H +++KLL+
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 618 HADINSGDVGHFACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIV 675
+DIN D C AA +++ + ++ D+ +G + LH+A E+ + V
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV 193
Query: 676 RFLLDQKADVDKPDVHGWTPRDLA 699
L + +DV + G TP A
Sbjct: 194 VLFLSRDSDVTLKNKEGETPLQCA 217
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 561 NGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAML 604
+G + LHIAA + +CV+L L ++D + +G PL A L
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 559 DNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENH 618
D NG I K + L +Y DS PL A + G EN I L+EN
Sbjct: 5 DKNGEIVEKIKDEKSINQNLDFLRNYR------DSYNRTPLMVACMLGMENAIDKLVENF 58
Query: 619 ADINSGDV-GHFACTAAEQNN-LELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVR 676
+ D+ G A A +NN L + ++++ G +V + +G T L ++ E+
Sbjct: 59 DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSY 118
Query: 677 FLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
FLL+ A+V+ ++ G TP +A + G EI
Sbjct: 119 FLLEHGANVNDRNLEGETPLIVASKYGRSEI 149
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 8/165 (4%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N D+ RT L +A G EN + L++ D +G+ L A+ + + L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 616 ENHADINSGDVGHFACTAAEQNNL-----ELLKEIVCYGGDVTRQRNNGSTALHVAVCED 670
+++N+ D F+ ++ E+ ++ +G +V + G T L VA
Sbjct: 89 SKGSNVNTKD---FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145
Query: 671 NVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCK 715
EIV+ LL+ AD+ D+ G T A G +E+ IF +
Sbjct: 146 RSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P+ D G +H AA G + + LL+++AD N D++GN+PL A GH V++ L
Sbjct: 63 PDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 615 MENHADINSGDVGHFACTAAEQNNLELLKEIV 646
++ H N G H TA + L E+V
Sbjct: 123 VK-HTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 33/153 (21%)
Query: 562 GRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADI 621
GRTAL + E LLL A+P+ D GN + +A G + ++ L+E AD+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLR-GANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 622 NSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQ 681
N D N G+ LH+A E ++ +V FL+
Sbjct: 97 NIED-------------------------------NEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 682 KA-DVDKPDVHGWTPRDLADQQGHEEIKCIFQS 713
A +V + G T DLA G E+ + Q+
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 47/110 (42%)
Query: 595 GNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTR 654
GN A G E + LL N G A + N E+ + ++ G +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 65
Query: 655 QRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGH 704
+ G+ +H A ++ ++ LL+ +ADV+ D G P LA ++GH
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P+ D G +H AA G + + LL+++AD N D++GN+PL A GH V++ L
Sbjct: 63 PDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 615 MENHADINSGDVGHFACTAAEQNNLELLKEIV 646
++ H N G H TA + L E+V
Sbjct: 123 VK-HTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA++G + LL + N+ + G L LG E +LL+ A+ + D
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG-ANPDLKDRTG 70
Query: 629 FACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKA-DV 685
FA AA L+ L+ ++ + DV + N G+ LH+A E ++ +V FL+ A +V
Sbjct: 71 FAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 686 DKPDVHGWTPRDLADQQGHEEIKCIFQS 713
+ G T DLA G E+ + Q+
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQA 158
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 595 GNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTR 654
GN A G E + LL N G A + N E+ + ++ G +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 65
Query: 655 QRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGH 704
+ G +H A ++ ++ LL+ +ADV+ D G P LA ++GH
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
+E D G T L+IA L+D AD N +S + P A G ++ ++
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92
Query: 616 ENHA--DINSGDV--GHFACTAAEQNNLELLKEIVCYG-GDVTRQRNNGSTAL--HVAVC 668
+ HA D+N + G+ AAE+ +++ +K ++ G D+ Q + G TAL V +
Sbjct: 93 K-HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151
Query: 669 EDN---VEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIF 711
E N +IV+ L++ AD D G T D A+Q+G+ EI I
Sbjct: 152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 633 AAEQNNLELLKEIVCYGGDVTRQRNN----GSTALHVAVCEDNVEIVRFLLDQKADVDKP 688
AA Q + + +KEI+ D T Q + G+T L++AV +++EI + L+D+ AD++
Sbjct: 12 AANQRDTKKVKEIL---QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 689 DVHGWTPRDLADQQGHEEI 707
+ +P A QG EI
Sbjct: 69 NSISDSPYLYAGAQGRTEI 87
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 625 DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
D+G AA + ++ ++ G DV + +G T LH+A E ++EIV LL AD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 685 VDKPDVHGWTPRDLADQQGHEEIKCIFQ 712
V+ D G T D++ G+E++ I Q
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEILQ 88
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGD-VG 627
AA G ++ V +L+ AD N+ D DG PL A GH ++++L++ AD+N+ D G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 628 HFACTAAEQNNLELLKEIV 646
A + N E L EI+
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 633 AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHG 692
A + +L+ +K+ V G DV R G LH A +EI+ FLL + AD++ PD H
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 693 WTPRDLADQQGHEEIKCI 710
TP A +GH + C+
Sbjct: 74 ITPLLSAVYEGH--VSCV 89
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 31/65 (47%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N + GR LH AA G + LL AD N+ D PL A+ GH + +KLL+
Sbjct: 34 NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL 93
Query: 616 ENHAD 620
AD
Sbjct: 94 SKGAD 98
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 633 AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD--VDKPDV 690
AA+ LE+L+ ++ G D+ + T L AV E +V V+ LL + AD V PD
Sbjct: 47 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD- 105
Query: 691 HGWTPRDLADQQGHEEIKCIFQ 712
G T + D Q IK + Q
Sbjct: 106 -GLTAFEATDNQA---IKALLQ 123
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 633 AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHG 692
A + +L+ +K+ V G DV R G LH A +EI+ FLL + AD++ PD H
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 693 WTPRDLADQQGHEEIKCI 710
TP A +GH + C+
Sbjct: 69 ITPLLSAVYEGH--VSCV 84
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 31/65 (47%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N + GR LH AA G + LL AD N+ D PL A+ GH + +KLL+
Sbjct: 29 NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL 88
Query: 616 ENHAD 620
AD
Sbjct: 89 SKGAD 93
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 633 AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD--VDKPDV 690
AA+ LE+L+ ++ G D+ + T L AV E +V V+ LL + AD V PD
Sbjct: 42 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD- 100
Query: 691 HGWTPRDLADQQGHEEIKCIFQ 712
G T + D Q IK + Q
Sbjct: 101 -GLTALEATDNQA---IKALLQ 118
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P+ D G +H AA G + + LL+++AD N D++GN+PL A GH V++ L
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 615 MENHADINSGDVGHFACTAAEQNNLELLKEIV 646
++ H N G H TA + L E+V
Sbjct: 123 VK-HTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA++G + LL + N+ + G L LG E +LL+ A+ + D
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG-ANPDLKDRTG 70
Query: 629 FACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKA-DV 685
FA AA L+ L+ ++ + DV + N G+ LH+A E ++ +V FL+ A +V
Sbjct: 71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 686 DKPDVHGWTPRDLADQQGHEEIKCIFQS 713
+ G T DLA G E+ + Q+
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQA 158
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 595 GNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTR 654
GN A G E + LL N G A + N E+ + ++ G +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 65
Query: 655 QRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGH 704
+ G +H A ++ ++ LL+ +ADV+ D G P LA ++GH
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P+ D G +H AA G + + LL+++AD N D++GN+PL A GH V++ L
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 615 MENHADINSGDVGHFACTAAEQNNLELLKEIV 646
++ H N G H TA + L E+V
Sbjct: 123 VK-HTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Query: 569 AASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628
AA++G + LL + N+ + G L LG E +LL+ A+ + D
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG-ANPDLKDRTG 70
Query: 629 FACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKA-DV 685
FA AA L+ L+ ++ + DV + N G+ LH+A E ++ +V FL+ A +V
Sbjct: 71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 686 DKPDVHGWTPRDLADQQGHEEIKCIFQS 713
+ G T DLA G E+ + Q+
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQA 158
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 595 GNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTR 654
GN A G E + LL N G A + N E+ + ++ G +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 65
Query: 655 QRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGH 704
+ G +H A ++ ++ LL+ +ADV+ D G P LA ++GH
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 381 VYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQV 440
+ LF+ + + L Q++ M + E VI Q + +FY++ G D+LV K+ +
Sbjct: 43 ILLFKNLDQEQLSQVLDAMFEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRS 102
Query: 441 VGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLL 500
VG+ GE+ ++ P+ T+ L L+R TF I+ N + + +
Sbjct: 103 VGQYDNRGSFGELALMYNTPRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFI 162
Query: 501 QHLKDLK-----------DPIMEGVLLETENMLARG 525
+ + K D I E + + E ++A+G
Sbjct: 163 ESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQG 198
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV 432
+F S ++ V LF+ + ++V + + + E +I Q E FYI+ +G V +L+
Sbjct: 157 MFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSILI 216
Query: 433 L------KNGVEQVV--GEAKTGEICGEIGVLCYRPQ 461
KNG Q V G+ GE+ ++ +P+
Sbjct: 217 RSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPR 253
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 564 TALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADIN- 622
T LH+AAS G + V LL Y+AD N+++ GNVPL A G + V + L+ N A ++
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Query: 623 SGDVGHFACTAAEQNNLELLKE 644
G A+ ELL+E
Sbjct: 134 CNKYGEMPVDKAKAPLRELLRE 155
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N+ D++G + LH A +G V +L+ A N ++ + PL A GH ++++ L+
Sbjct: 33 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 92
Query: 616 ENHADINS----GDVG-HFAC 631
+ ADIN+ G+V H+AC
Sbjct: 93 QYKADINAVNEHGNVPLHYAC 113
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 606 GHENVIKLLMEN-HADINSGDVG-----HFACTAAEQNNLELLKEIVCYGGDVTRQRNNG 659
G+ ++L ++N D+N GD H+AC +E+L + G +
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML---IMRGARINVMNRGD 72
Query: 660 STALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
T LH+A + +IV+ LL KAD++ + HG P A G +++
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 120
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 564 TALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADIN- 622
T LH+AAS G + V LL Y+AD N+++ GNVPL A G + V + L+ N A ++
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Query: 623 SGDVGHFACTAAEQNNLELLKE 644
G A+ ELL+E
Sbjct: 129 CNKYGEMPVDKAKAPLRELLRE 150
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N+ D++G + LH A +G V +L+ A N ++ + PL A GH ++++ L+
Sbjct: 28 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 87
Query: 616 ENHADINS----GDVG-HFAC 631
+ ADIN+ G+V H+AC
Sbjct: 88 QYKADINAVNEHGNVPLHYAC 108
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 606 GHENVIKLLMEN-HADINSGDVG-----HFACTAAEQNNLELLKEIVCYGGDVTRQRNNG 659
G+ ++L ++N D+N GD H+AC +E+L + G +
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML---IMRGARINVMNRGD 67
Query: 660 STALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
T LH+A + +IV+ LL KAD++ + HG P A G +++
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 115
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P+ D G +H AA G + + LL+ +AD N D++GN+PL A GH V++ L
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 615 MENHADINSGDVGHFACTAAEQNNLELLKEIV 646
++ H N G H TA + L E+V
Sbjct: 123 VK-HTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 33/153 (21%)
Query: 562 GRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADI 621
GRTAL + E LLL A+P+ D G + +A G + ++ L+EN AD+
Sbjct: 38 GRTALQVMKLGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 622 NSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQ 681
N D N G+ LH+A E ++ +V FL+
Sbjct: 97 NIED-------------------------------NEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 682 KA-DVDKPDVHGWTPRDLADQQGHEEIKCIFQS 713
A +V + G T DLA G E+ + Q+
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 595 GNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTR 654
GN A G E + LL N G A + N E+ + ++ G +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 65
Query: 655 QRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGH 704
+ G +H A ++ ++ LL+ +ADV+ D G P LA ++GH
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGH 115
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%)
Query: 381 VYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQV 440
+ LF+ + + + Q++ M + E VI Q + +FY++ G D+ V +GV +
Sbjct: 150 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 209
Query: 441 VGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLL 500
VG GE+ ++ P+ T+ L L+R TF I+ N + + +
Sbjct: 210 VGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFI 269
Query: 501 QHLKDLK 507
+ L LK
Sbjct: 270 ESLPFLK 276
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 633 AAEQNNLELLKEIVC-YGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVH 691
AA+ +N ++K +V G + +Q +G T + +A E +E+V +L+ Q A V+ D
Sbjct: 286 AAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDAT 345
Query: 692 GWTPRDLADQQGHEEIKCIFQSCK 715
T R LA H I IF C+
Sbjct: 346 DHTARQLAQANNHHNIVDIFDRCR 369
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 79/203 (38%), Gaps = 58/203 (28%)
Query: 563 RTALHIAASKGSENCVLLLLDYEA--------DPNSIDSDGNVPLWEAMLGGHENVIKLL 614
RT LH AS S L+ +EA D N+ D D N PL A+L ++ L
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYL 185
Query: 615 MENHAD---------------------------INS----GDV------GHFACTAAEQN 637
+ AD +NS GD+ G A N
Sbjct: 186 XKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHN 245
Query: 638 -------NLELLKE---IVCYGGDVTR--QRNNGSTALHVAVCEDNVEIVRFLLDQK-AD 684
+ +LL E V Y G + ++ G TALH A N IV++L+ +K ++
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSN 305
Query: 685 VDKPDVHGWTPRDLADQQGHEEI 707
DK D G TP LA Q+G E+
Sbjct: 306 KDKQDEDGKTPIXLAAQEGRIEV 328
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%)
Query: 381 VYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQV 440
+ LF+ + + + Q++ M + E VI Q + +FY++ G D+ V +GV +
Sbjct: 150 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 209
Query: 441 VGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLL 500
VG GE+ ++ P+ T+ L L+R TF I+ N + + +
Sbjct: 210 VGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFI 269
Query: 501 QHLKDLK 507
+ L LK
Sbjct: 270 ESLPFLK 276
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 563 RTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHAD 620
+AL +A SKG + V +LLD D N D +G PL A+ G H +K+L+E+ AD
Sbjct: 86 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Query: 565 ALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSG 624
++H A++G + ++ E N D +G PL A G V++ L++N AD
Sbjct: 22 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 81
Query: 625 DVGHFACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQK 682
G + A + +++K ++ G DV NG T L AV ++V+ V+ LL+
Sbjct: 82 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 141
Query: 683 ADVDKPDVHGWTPRDLADQQGHEEIKCIFQS 713
AD G+ DLA G+ ++ + +S
Sbjct: 142 ADPTIETDSGYNSMDLAVALGYRSVQQVIES 172
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%)
Query: 381 VYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQV 440
+ LF+ + + + Q++ M + E VI Q + +FY++ G D+ V +GV +
Sbjct: 43 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 102
Query: 441 VGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VG GE+ ++ P+ T+ L L+R TF I+ N
Sbjct: 103 VGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKN 150
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 594 DGNVPLWEAMLGGHENVIKLLMENHADINS-GDVGHFAC-----TAAEQNNLELLKEIVC 647
DG PL A E +++ L+ +HAD+N+ D+G A + LLK
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--- 70
Query: 648 YGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
G + Q N T L +A E + E + LLD A+ D D PRD+A ++ H +I
Sbjct: 71 -GANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 129
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 563 RTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHAD 620
+AL +A SKG + V +LLD D N D +G PL A+ G H +K+L+E+ AD
Sbjct: 70 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Query: 565 ALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSG 624
++H A++G + ++ E N D +G PL A G V++ L++N AD
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 625 DVGHFACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQK 682
G + A + +++K ++ G DV NG T L AV ++V+ V+ LL+
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125
Query: 683 ADVDKPDVHGWTPRDLADQQGHEEIKCIFQS 713
AD G+ DLA G+ ++ + +S
Sbjct: 126 ADPTIETDSGYNSMDLAVALGYRSVQQVIES 156
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%)
Query: 381 VYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQV 440
+ LF+ + + + Q++ M + E VI Q + +FY++ G D+ V +GV +
Sbjct: 49 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 108
Query: 441 VGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VG GE+ ++ P+ T+ L L+R TF I+ N
Sbjct: 109 VGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKN 156
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 636 QNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTP 695
+ +L++ I+ D + + G TALH AVC + EIV+FL+ +V+ D GWTP
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P+ ++ G TALH A G V L+ + + N+ DSDG PL A + V K L
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 615 MENHADI 621
+E+ A +
Sbjct: 123 VESGAAV 129
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 640 ELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADV 685
E++K +V +G +V ++G T LH A +NV++ +FL++ A V
Sbjct: 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 563 RTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHAD 620
+AL +A SKG + V +LLD D N D +G PL A+ G H +K+L+E+ AD
Sbjct: 68 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Query: 565 ALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSG 624
++H A++G + ++ E N D +G PL A G V++ L++N AD
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 625 DVGHFACT--AAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQK 682
G + A + +++K ++ G DV NG T L AV ++V+ V+ LL+
Sbjct: 64 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 123
Query: 683 ADVDKPDVHGWTPRDLADQQGHEEIKCIFQS 713
AD G+ DLA G+ ++ + +S
Sbjct: 124 ADPTIETDSGYNSMDLAVALGYRSVQQVIES 154
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 636 QNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTP 695
+ +L++ I+ D + + G TALH AVC + EIV+FL+ +V+ D GWTP
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
P+ ++ G TALH A G V L+ + + N+ DSDG PL A + V K L
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 615 MENHADI 621
+E+ A +
Sbjct: 123 VESGAAV 129
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 640 ELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADV 685
E++K +V +G +V ++G T LH A +NV++ +FL++ A V
Sbjct: 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%)
Query: 381 VYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQV 440
+ LF+ + + + Q++ M + E VI Q + +FY++ G D+ V +GV +
Sbjct: 39 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 98
Query: 441 VGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLL 500
VG GE+ ++ P+ T+ L L+R TF I+ N + + +
Sbjct: 99 VGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFI 158
Query: 501 QHLKDLK 507
+ L LK
Sbjct: 159 ESLPFLK 165
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVGYGD P +F IL++ +GL
Sbjct: 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 251 YVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNL 302
Y +++W+I T TTVGYGD+ PV + + MLF + + +TN
Sbjct: 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNF 95
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 25/152 (16%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
N +D+NG TALH + S N P+ + +L V K+
Sbjct: 105 NIADSNGNTALHYSVSHA----------------------NFPVVQQLLDS--GVCKVDK 140
Query: 616 ENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIV 675
+N A + + A T Q+++E + ++ G + G TAL +AV V++V
Sbjct: 141 QNRAGYSPIMLTALA-TLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVV 199
Query: 676 RFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707
+ LL +ADV+ D G T A + GH+EI
Sbjct: 200 KALLACEADVNVQDDDGSTALMCACEHGHKEI 231
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 562 GRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615
G+TAL +A S G + V LL EAD N D DG+ L A GH+ + LL+
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 234 IGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTA 293
I + G +F+E W S+YW+ T+ TVGYGD P M F + ++ +G A
Sbjct: 32 IYGTAGFHFIEGESW---TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFA 88
Query: 294 YLIGNMTNLVVH 305
+ + +++
Sbjct: 89 VAVERLLEFLIN 100
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA+L I Y +++WS+ T TTVG
Sbjct: 57 VLLVIVLLAGSYLAVLA------ERGAPGAAL----------ISYPDALWWSVETATTVG 100
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T+Y
Sbjct: 101 YGDLYPVTLWGRCVAVVVMV--AGITSY 126
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVG+GD P +F IL++ +GL
Sbjct: 31 LRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++++S+ TLTTVGYGD P +F IL++ +GL
Sbjct: 31 LRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 31/143 (21%)
Query: 565 ALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSG 624
L AA++G V LL+ ADPN+++ G P+ + M+ G V +LL+ + A+ N
Sbjct: 15 GLATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNCA 73
Query: 625 DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684
D +TR +H A E ++ + L A
Sbjct: 74 D-----------------------PATLTR-------PVHDAAREGFLDTLVVLHRAGAR 103
Query: 685 VDKPDVHGWTPRDLADQQGHEEI 707
+D D G P DLA++QGH +I
Sbjct: 104 LDVCDAWGRLPVDLAEEQGHRDI 126
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVGYG+ P +F IL++ +GL
Sbjct: 31 LRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++++S+ TLTTVGYGD P +F IL++ +GL
Sbjct: 31 LRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 628 HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDK 687
H A A Q +L L+ I+ GG + + +G+TALH A + + ++ LL +A V
Sbjct: 176 HLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT 235
Query: 688 PDVHGWTPRDLADQQGHEEIKCIFQSCK 715
+ G T D+A ++ H+E + + + +
Sbjct: 236 VNEAGETALDIARKKHHKECEELLEQAQ 263
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVGYG+ P +F IL++ +GL
Sbjct: 31 LRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 234 IGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTA 293
I + G +F+E W S+YW+ T+ TVGYGD P M F + ++ + A
Sbjct: 32 IYGTAGFHFIEGESW---TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFA 88
Query: 294 YLIGNMTNLVVH 305
+ + +++
Sbjct: 89 VAVARLLTFLIN 100
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 41 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVATATTVG 84
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV + ++ M+ G+T++
Sbjct: 85 YGDLYPVTLWGRLVAVVVMV--AGITSF 110
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS++T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVSTATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 57 YGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 628 HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDK 687
H A A Q +L L+ I+ GG + + +G+TALH A + + ++ LL +A V
Sbjct: 195 HLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT 254
Query: 688 PDVHGWTPRDLADQQGHEEIKCIFQSCK 715
+ G T D+A ++ H+E + + + +
Sbjct: 255 VNEAGETALDIARKKHHKECEELLEQAQ 282
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 40 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 83
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV + ++ M+ G+T++
Sbjct: 84 YGDLYPVTLWGRLVAVVVMV--AGITSF 109
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV 432
++ + KV + + + ++ F E +++Q E DFYI+ G +L
Sbjct: 245 MYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQ 304
Query: 433 LKNGVEQVVGEAKTG--EICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIV 485
++ E+ V + G + GEI +L RP+ TV + + ++L+R F ++
Sbjct: 305 RRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVL 359
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 383 LFRGVSNDLLFQLV-----SEMKAEYFP----PKEDVILQNEAPTDFYILVTGAVDLLVL 433
L + +S ++LF + S++ FP E VI Q +FY++ G VD+ V
Sbjct: 128 LAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV- 186
Query: 434 KNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANV 489
NG + V G GE+ ++ P+ TV+ K +L ++R ++ I+ +
Sbjct: 187 -NG--EWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGST 239
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV + ++ M+ G+T++
Sbjct: 57 YGDLYPVTLWGRLVAVVVMV--AGITSF 82
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPAALWWSVETATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 234 IGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTA 293
I + G +F+E W S+YW+ T+ TVGYGD P M F ++ +G A
Sbjct: 15 IYGTAGFHFIEGESW---TVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIGTFA 71
Query: 294 YLIGNMTNLVV 304
+ + ++
Sbjct: 72 VAVERLLEFLI 82
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 234 IGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTA 293
I + G +F+E W S+YW+ T+ TVGYGD P M F ++ +G A
Sbjct: 22 IYGTAGFHFIEGESW---TVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFA 78
Query: 294 YLIGNMTNLVVH 305
+ + +++
Sbjct: 79 VAVERLLEFLIN 90
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVATATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVATATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 57 YGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 234 IGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTA 293
I + G +F+E W S+YW+ T+ TVGYGD P M F ++ +G A
Sbjct: 15 IYGTAGFHFIEGESW---TVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFA 71
Query: 294 YLIGNMTNLVV 304
+ + ++
Sbjct: 72 VAVQRLLEFLI 82
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 592 DSDGNVPL-WEAMLGGHENVIKLL--MEN-HADINSGDVG----HFACTAAEQNNLELLK 643
D DG +PL W HE LL MEN + D D G H AC+ NLE++K
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG---NLEVVK 89
Query: 644 EIV--CYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADV 685
+ D+ + N G T LH+AV + E+ +FL++ A V
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 628 HFACTAAEQNNLELLKEIVCYGGDVTRQRN-NGSTALHVAVCEDNVEIVRFLLDQKADV- 685
H AC +N ++E++ + Q++ +G LH +V EI FLL + +V
Sbjct: 7 HQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 686 --DKPDVHGWTPRDLADQQGHEEI 707
D PD GWTP +A G+ E+
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEV 87
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 254 SMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNL 302
+++W++ T TTVGYGD+ P V I ML + LIG ++N+
Sbjct: 181 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 229
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 254 SMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNL 302
+++W++ T TTVGYGD+ P V I ML + LIG ++N+
Sbjct: 169 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 217
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 234 IGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTA 293
I + G +F+E W S+YW+ T+ TVGYGD P M F ++ +G A
Sbjct: 15 IYGTAGFHFIEGESW---TVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFA 71
Query: 294 YLIGNMTNLVV 304
+ + ++
Sbjct: 72 VAVERLLEFLI 82
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 592 DSDGNVPL-WEAMLGGHENVIKLL--MEN-HADINSGDVG----HFACTAAEQNNLELLK 643
D DG +PL W HE LL MEN + D D G H AC+ NLE++K
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG---NLEVVK 89
Query: 644 EIV--CYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTP 695
+ D+ + N G T LH+AV + E+ +FL++ A V D P
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIP 143
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 628 HFACTAAEQNNLELLKEIVCYGGDVTRQRN-NGSTALHVAVCEDNVEIVRFLLDQKADV- 685
H AC +N ++E++ + Q++ +G LH +V EI FLL + +V
Sbjct: 7 HQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 686 --DKPDVHGWTPRDLADQQGHEEI 707
D PD GWTP +A G+ E+
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEV 87
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 592 DSDGNVPL-WEAMLGGHENVIKLL--MEN-HADINSGDVG----HFACTAAEQNNLELLK 643
D DG +PL W HE LL MEN + D D G H AC+ NLE++K
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG---NLEVVK 89
Query: 644 EIV--CYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADV 685
+ D+ + N G T LH+AV + E+ +FL++ A V
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 628 HFACTAAEQNNLELLKEIVCYGGDVTRQRN-NGSTALHVAVCEDNVEIVRFLLDQKADV- 685
H AC +N ++E++ + Q++ +G LH +V EI FLL + +V
Sbjct: 7 HQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 686 --DKPDVHGWTPRDLADQQGHEEI 707
D PD GWTP +A G+ E+
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEV 87
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVQTATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 57 YGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVITATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 57 YGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 14 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 57
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 58 YGDLYPVTLWGRCVAVVVMV--AGITSF 83
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 57 YGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 12 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 55
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 56 YGDLYPVTLWGRCVAVVVMV--AGITSF 81
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 16/67 (23%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 77
Query: 267 YGDLHPV 273
YGDL+PV
Sbjct: 78 YGDLYPV 84
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLACLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV + ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 16/67 (23%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVHTATTVG 77
Query: 267 YGDLHPV 273
YGDL+PV
Sbjct: 78 YGDLYPV 84
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVG GD P +F IL++ +GL
Sbjct: 31 LRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 12 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 55
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL PV + ++ M+ G+T++
Sbjct: 56 YGDLCPVTLWGRLVAVVVMV--AGITSF 81
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL PV + ++ M+ G+T++
Sbjct: 57 YGDLCPVTLWGRLVAVVVMV--AGITSF 82
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T T VG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATCVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV + ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 658 NGSTALHVAVCEDNVEIVRFLLDQKADVDKPD-VHGWTPRDLA 699
+G T LHVAV + E+VR L D AD++KP+ G TP LA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA 199
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 562 GRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHA 619
GRT LH+A + + + LLL ADP + G PL A+L + + +LL + A
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 583 DYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVG------HFACTAAEQ 636
D+ + + DG+ PL A++ +++LL + AD+N + H A A
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205
Query: 637 NNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFL 678
+ LELL + G D T + G T L A+ N + R L
Sbjct: 206 SVLELLLKA---GADPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 557 ESDN-NGRTALHIAASKGSENCVLLLLDYEADPNSIDSD-GNVPLWEAMLGGHENVIKLL 614
E++N +G T LH+A V LL D AD N + G PL A+ +V++LL
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211
Query: 615 MENHAD 620
++ AD
Sbjct: 212 LKAGAD 217
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 658 NGSTALHVAVCEDNVEIVRFLLDQKADVDKPD-VHGWTPRDLA 699
+G T LHVAV + E+VR L D AD++KP+ G TP LA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA 199
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 562 GRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHA 619
GRT LH+A + + + LLL ADP + G PL A+L + + +LL + A
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 583 DYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVG------HFACTAAEQ 636
D+ + + DG+ PL A++ +++LL + AD+N + H A A
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205
Query: 637 NNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFL 678
+ LELL + G D T + G T L A+ N + R L
Sbjct: 206 SVLELLLKA---GADPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 557 ESDN-NGRTALHIAASKGSENCVLLLLDYEADPNSIDSD-GNVPLWEAMLGGHENVIKLL 614
E++N +G T LH+A V LL D AD N + G PL A+ +V++LL
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211
Query: 615 MENHAD 620
++ AD
Sbjct: 212 LKAGAD 217
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 234 IGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTA 293
I + G +F+E W S+YW+ T+ VGYGD P M F ++ +G A
Sbjct: 15 IYGTAGFHFIEGESW---TVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIGTFA 71
Query: 294 YLIGNMTNLVV 304
+ + ++
Sbjct: 72 VAVERLLEFLI 82
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVG G+ P +F IL++ +GL
Sbjct: 48 LRPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGL 90
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 30/121 (24%)
Query: 566 LHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGD 625
LH AA +G+ + + LD N +D G+ L+ A GGH+++++ L
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFT--------- 127
Query: 626 VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADV 685
Q N+EL +Q G TALH A + +IV+ LL + A
Sbjct: 128 ----------QPNIEL-----------NQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166
Query: 686 D 686
D
Sbjct: 167 D 167
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVG G+ P +F IL++ +GL
Sbjct: 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVG G+ P +F IL++ +GL
Sbjct: 48 LRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVG G+ P +F IL++ +GL
Sbjct: 48 LRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVG G+ P +F IL++ +GL
Sbjct: 48 LRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVG G+ P +F IL++ +GL
Sbjct: 30 LRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 72
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 559 DNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGH--ENVIKLLME 616
D NGRTAL A GS+ CV LL + AD + D G + M G+ V++ L+E
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH-MAAGYVRPEVVEALVE 132
Query: 617 NHADINSGDVGHFACTAAEQNNLELLKEIV 646
ADI D TA LEL +EI+
Sbjct: 133 LGADIEVED--ERGLTA-----LELAREIL 155
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENH----ADINSGDVGHFACTAAEQNNLELLKEIVCY 648
S+ P W A E + L+E+ D N F + LL E
Sbjct: 43 SEYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--- 99
Query: 649 GGDVT-RQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQ 701
G D+ R G TALH+A E+V L++ AD++ D G T +LA +
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 559 DNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGH--ENVIKLLME 616
D NGRTAL A GS+ CV LL + AD + D G + M G+ V++ L+E
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH-MAAGYVRPEVVEALVE 131
Query: 617 NHADINSGDVGHFACTAAEQNNLELLKEIV 646
ADI D TA LEL +EI+
Sbjct: 132 LGADIEVED--ERGLTA-----LELAREIL 154
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 593 SDGNVPLWEAMLGGHENVIKLLMENH----ADINSGDVGHFACTAAEQNNLELLKEIVCY 648
S+ P W A E + L+E+ D N F + LL E
Sbjct: 42 SEYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--- 98
Query: 649 GGDVT-RQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQ 701
G D+ R G TALH+A E+V L++ AD++ D G T +LA +
Sbjct: 99 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 232 TWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
T++ + G F +R + ++Y+S+ TLTTVG G+ P VF IL++ +GL
Sbjct: 34 TFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGL 93
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 367 SSISHYLFYS-LMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVT 425
SS L Y L+ + + + ++ +L + + + P E +I + + +FY++
Sbjct: 115 SSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEY 174
Query: 426 GAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTF 481
GAVD V K G + V+ + K + GE+ +L P+ TV + +++ L ++ F
Sbjct: 175 GAVD--VSKKG-QGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGF 227
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 382 YLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVV 441
+LF + +D +++ ++ + P +I Q + FY++ G VD V N V
Sbjct: 13 FLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVN--- 69
Query: 442 GEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQ 501
+ G GE+ ++ P+ TV L L+R TF I+ + ++ ++LL+
Sbjct: 70 -SSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLK 128
Query: 502 HLKDLK 507
+ LK
Sbjct: 129 SMPVLK 134
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 37.0 bits (84), Expect = 0.047, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPV 273
I Y +++WS+ T TTVGYGD +PV
Sbjct: 39 ISYPDAIWWSVETATTVGYGDRYPV 63
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV 432
++ + KV + + + ++ F + +++Q E +F+I++ G+ +L
Sbjct: 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQ 213
Query: 433 LKNGVEQVVGEAKTG--EICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIV 485
++ E+ V + G + GEI +L RP+ TV + + ++L+R F ++
Sbjct: 214 RRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVL 268
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 378 MDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGV 437
++K LF + ++ + M F E VI Q + +FY++ G +D+ V N
Sbjct: 41 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEW 99
Query: 438 EQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VGE G GE+ ++ P+ TV+ K +L ++R ++ I+ +
Sbjct: 100 ATSVGE---GGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGS 147
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV 432
++ + KV + + + ++ F + +++Q E +F+I++ G+ +L
Sbjct: 152 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQ 211
Query: 433 LKNGVEQVVGEAKTG--EICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIV 485
++ E+ V + G + GEI +L RP+ TV + + ++L+R F ++
Sbjct: 212 RRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVL 266
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 378 MDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGV 437
++K LF + ++ + M F E VI Q + +FY++ G +D+ V N
Sbjct: 39 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEW 97
Query: 438 EQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VGE G GE+ ++ P+ TV+ K +L ++R ++ I+ +
Sbjct: 98 ATSVGE---GGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGS 145
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV 432
++ + KV + + + ++ F + +++Q E +F+I++ G+ +L
Sbjct: 150 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQ 209
Query: 433 LKNGVEQVVGEAKTG--EICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIV 485
++ E+ V + G + GEI +L RP+ TV + + ++L+R F ++
Sbjct: 210 RRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVL 264
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 378 MDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGV 437
++K LF + ++ + M F E VI Q + +FY++ G +D+ V N
Sbjct: 37 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEW 95
Query: 438 EQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VGE G GE+ ++ P+ TV+ K +L ++R ++ I+ +
Sbjct: 96 ATSVGE---GGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGS 143
>pdb|3E97|A Chain A, Crystal Structure Of Transcriptional Regulator Of CrpFNR
Family (Yp_604437.1) From Deinococcus Geothermalis Dsm
11300 At 1.86 A Resolution
Length = 231
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 378 MDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDL-LVLKNG 436
+ + LF+ V D + + + F P E V+ Q+ +++ TG V + V G
Sbjct: 8 LKRSPLFQNVPEDAXREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGG 67
Query: 437 VEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTF 481
E+V+G+ + GE VL ++ + +VR + L L+R F
Sbjct: 68 RERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLXLHREHF 112
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 36.2 bits (82), Expect = 0.082, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 31/142 (21%)
Query: 566 LHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGD 625
L AA++G V LL+ A+PN+ +S G P+ + M+ G V +LL+ + A+ N D
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 626 VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADV 685
+TR +H A E ++ + L A +
Sbjct: 75 -----------------------PATLTR-------PVHDAAREGFLDTLVVLHRAGARL 104
Query: 686 DKPDVHGWTPRDLADQQGHEEI 707
D D G P DLA++ GH ++
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDV 126
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 36.2 bits (82), Expect = 0.084, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++W+ T TTV
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWACETATTVX 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV + ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 24/103 (23%)
Query: 217 CFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTR 276
CF+++ AA + E W NFLE S Y+ +L+T+G GD P
Sbjct: 184 CFFFIPAAVFSVLEDDW-------NFLE---------SFYFCFISLSTIGLGDYVPGEGY 227
Query: 277 EMVFDILFMLFNLGLTAY-LIGNMTNLVVHGT----SRTRKFR 314
F L+ +G+T Y L+G + LVV T +KFR
Sbjct: 228 NQKFR---ELYKIGITCYLLLGLIAMLVVLETFCELHELKKFR 267
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 22/93 (23%)
Query: 178 LRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGAS 237
++R SA F R +N + C F+ + + A F YL+ +H R +
Sbjct: 1 MQRGSAYFLRGRARQNLKVLLLYCA---FLLVMLLAYASIFRYLM---WHLEGRAY---- 50
Query: 238 LGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDL 270
++ +YW+IT +TT+G+GD+
Sbjct: 51 ------------SFMAGIYWTITVMTTLGFGDI 71
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 22/93 (23%)
Query: 178 LRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGAS 237
++R SA F R +N + C F+ + + A F YL+ +H R +
Sbjct: 1 MQRGSAYFLRGRARQNLKVLLLYCA---FLLVMLLAYASIFRYLM---WHLEGRAY---- 50
Query: 238 LGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDL 270
++ +YW+IT +TT+G+GD+
Sbjct: 51 ------------SFMAGIYWTITVMTTLGFGDI 71
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
N++D+ GR LH A G L L AD + DS+G PL AM + +++ LL
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 638 NLELLKEIVCYGGDVT--RQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTP 695
+L + + + +G DV + +T L A +++ FLL A+V++ D G P
Sbjct: 212 SLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGP 271
Query: 696 RDLADQQGHEEIKCIF 711
A GH + C+F
Sbjct: 272 LHHATILGHTGLACLF 287
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
N++D+ GR LH A G L L AD + DS+G PL AM + +++ LL
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 638 NLELLKEIVCYGGDVT--RQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTP 695
+L + + + +G DV + +T L A +++ FLL A+V++ D G P
Sbjct: 212 SLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGP 271
Query: 696 RDLADQQGHEEIKCIF 711
A GH + C+F
Sbjct: 272 LHHATILGHTGLACLF 287
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLL 614
N++D+ GR LH A G L L AD + DS+G PL AM + +++ LL
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 638 NLELLKEIVCYGGDVT--RQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTP 695
+L + + + +G DV + +T L A +++ FLL A+V++ D G P
Sbjct: 212 SLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGP 271
Query: 696 RDLADQQGHEEIKCIF 711
A GH + C+F
Sbjct: 272 LHHATILGHTGLACLF 287
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
pdb|3KCC|B Chain B, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
Length = 260
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 74 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 133
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 134 SAWVRAKTACEVAEISYKKFRQLIQVN 160
>pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3R|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 16 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 75
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 76 SAWVRAKTACEVAEISYKKFRQLIQVN 102
>pdb|1O3S|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 16 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 75
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 76 SAWVRAKTACEVAEISYKKFRQLIQVN 102
>pdb|1I6X|A Chain A, Structure Of A Star Mutant Crp-Camp At 2.2 A
pdb|1I6X|B Chain B, Structure Of A Star Mutant Crp-Camp At 2.2 A
Length = 209
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKHEEGKEMILSYLNQGDFIGELGLFEEGQER 82
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUO|B Chain B, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
Length = 209
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 82
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|3HIF|A Chain A, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|B Chain B, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|C Chain C, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|D Chain D, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|E Chain E, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|F Chain F, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3RYP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 83
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1I5Z|A Chain A, Structure Of Crp-Camp At 1.9 A
pdb|1I5Z|B Chain B, Structure Of Crp-Camp At 1.9 A
pdb|1ZRC|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRC|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRD|A Chain A, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRD|B Chain B, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRE|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRE|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRF|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|1ZRF|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|2GZW|A Chain A, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|B Chain B, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|C Chain C, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|D Chain D, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2WC2|A Chain A, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|2WC2|B Chain B, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|3IYD|G Chain G, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3IYD|H Chain H, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3N4M|A Chain A, E. Coli Rna Polymerase Alpha Subunit C-Terminal Domain In
Complex With Cap And Dna
Length = 209
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 82
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 251 YVTSMYWSITTLTTVGYGDLHP 272
+V + ++S+ TL TVGYGD+HP
Sbjct: 97 FVGAFFFSVETLATVGYGDMHP 118
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 83
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 251 YVTSMYWSITTLTTVGYGDLHP 272
+V + ++S+ TL TVGYGD+HP
Sbjct: 97 FVGAFFFSVETLATVGYGDMHP 118
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
Length = 205
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 82
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant
pdb|3FWE|B Chain B, Crystal Structure Of The Apo D138l Cap Mutant
Length = 210
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 83
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 31/142 (21%)
Query: 566 LHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGD 625
L AA++G V LL+ A PN+ +S G P+ + M+ G V +LL+ + A+ N D
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 626 VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADV 685
+TR +H A E ++ + L A +
Sbjct: 75 -----------------------PATLTR-------PVHDAAREGFLDTLVVLHRAGARL 104
Query: 686 DKPDVHGWTPRDLADQQGHEEI 707
D D G P DLA++ GH ++
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDV 126
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 556 NESDNNGRTALHIAASKGSENCVLLLLDYEADP 588
N D+NG T L+IAA G+ + V LLDY ADP
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 652 VTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVD----------KPD---VHGWTPRDL 698
+T + G TALH+AV NV +VR LL + A V +P +G P
Sbjct: 68 MTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSF 127
Query: 699 ADQQGHEEI-KCIFQSCKETKAQ 720
A G EEI + + + + +AQ
Sbjct: 128 AACVGSEEIVRLLIEHGADIRAQ 150
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 33/158 (20%)
Query: 562 GRTALHIAASKGSENCVLLLLDYEADPNSIDS-------DGNVPLWEAMLGGHENVIKLL 614
G TALHIAA + ++L+ EA P + +G L A++ + N+++ L
Sbjct: 37 GETALHIAALYDNLEAAMVLM--EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRAL 94
Query: 615 MENHADIN---SGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDN 671
+ A ++ +G V H+ +NL + YG L A C +
Sbjct: 95 LARGASVSARATGSVFHY-----RPHNL------IYYG----------EHPLSFAACVGS 133
Query: 672 VEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKC 709
EIVR L++ AD+ D G T + Q ++ C
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFAC 171
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3QOP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILFYLNQGDFIGELGLFEEGQER 83
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 32.7 bits (73), Expect = 0.86, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 378 MDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGV 437
++K LF + ++ + M F E VI Q + +FY++ G +D+ V N
Sbjct: 40 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEW 98
Query: 438 EQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VGE G GE+ ++ P+ TV+ K +L ++R ++ I+ +
Sbjct: 99 ATSVGE---GGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGS 146
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 32.7 bits (73), Expect = 0.86, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 378 MDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGV 437
++K LF + ++ + M F E VI Q + +FY++ G +D+ V N
Sbjct: 47 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEW 105
Query: 438 EQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VGE G GE+ ++ P+ TV+ K +L ++R ++ I+ +
Sbjct: 106 ATSVGE---GGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGS 153
>pdb|4FQV|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H7 Influenza Hemagglutinin
pdb|4FQV|C Chain C, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H7 Influenza Hemagglutinin
pdb|4FQV|E Chain E, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H7 Influenza Hemagglutinin
Length = 327
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 16/129 (12%)
Query: 725 VAERPQQEVHYLGRFTSEPAIRPITHE----------VSFEGVDGSGSQNHSRRRTNNFH 774
+ R +V Y G+F +E A+R I E ++ G+ +G+ + RR ++F+
Sbjct: 82 IERREGSDVCYPGKFVNEEALRQILRESGGIDKETMGFTYSGIRTNGTTSACRRSGSSFY 141
Query: 775 NSLFGIMSAAHNVEKDILFPPQHTKVFKAPGINSARVTIGCPEKGEVAGKLVLLPSTFQE 834
+ ++S N PQ TK +K + A + G G + L S +
Sbjct: 142 AEMKWLLSNTDNAAF-----PQMTKSYKNTRKDPALIIWGIHHSGSTTEQTKLYGSG-NK 195
Query: 835 LLDIGEKKF 843
L+ +G +
Sbjct: 196 LITVGSSNY 204
>pdb|1TI8|A Chain A, H7 Haemagglutinin
Length = 314
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 16/129 (12%)
Query: 725 VAERPQQEVHYLGRFTSEPAIRPITHE----------VSFEGVDGSGSQNHSRRRTNNFH 774
+ R +V Y G+F +E A+R I E ++ G+ +G+ + RR ++F+
Sbjct: 76 IERREGSDVCYPGKFVNEEALRQILRESGGIDKETMGFTYSGIRTNGATSACRRSGSSFY 135
Query: 775 NSLFGIMSAAHNVEKDILFPPQHTKVFKAPGINSARVTIGCPEKGEVAGKLVLLPSTFQE 834
+ ++S N PQ TK +K + A + G G + L S +
Sbjct: 136 AEMKWLLSNTDNAAF-----PQMTKSYKNTRKDPALIIWGIHHSGSTTEQTKLYGSG-NK 189
Query: 835 LLDIGEKKF 843
L+ +G +
Sbjct: 190 LITVGSSNY 198
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 254 SMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTN 301
+M+W++ TL+T GYGD P + V M+ +G+ G +
Sbjct: 165 AMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILAT 212
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 254 SMYWSITTLTTVGYGDLHP 272
+ ++S+ TL TVGYGD+HP
Sbjct: 82 AFFFSVETLATVGYGDMHP 100
>pdb|4DJ6|A Chain A, Structure Of The Hemagglutinin From A Highly Pathogenic
H7n7 Influenza Virus
pdb|4DJ6|C Chain C, Structure Of The Hemagglutinin From A Highly Pathogenic
H7n7 Influenza Virus
pdb|4DJ6|E Chain E, Structure Of The Hemagglutinin From A Highly Pathogenic
H7n7 Influenza Virus
pdb|4DJ7|A Chain A, Structure Of The Hemagglutinin Complexed With 3sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ7|C Chain C, Structure Of The Hemagglutinin Complexed With 3sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ7|E Chain E, Structure Of The Hemagglutinin Complexed With 3sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ8|A Chain A, Structure Of The Hemagglutinin Complexed With 6sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ8|C Chain C, Structure Of The Hemagglutinin Complexed With 6sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ8|E Chain E, Structure Of The Hemagglutinin Complexed With 6sln From A
Highly Pathogenic H7n7 Influenza Virus
Length = 327
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 16/129 (12%)
Query: 725 VAERPQQEVHYLGRFTSEPAIRPITHE----------VSFEGVDGSGSQNHSRRRTNNFH 774
+ R +V Y G+F +E A+R I E ++ G+ +G+ + RR ++F+
Sbjct: 82 IERREGSDVCYPGKFVNEEALRQILRESGGIDKETMGFTYSGIRTNGTTSACRRSGSSFY 141
Query: 775 NSLFGIMSAAHNVEKDILFPPQHTKVFKAPGINSARVTIGCPEKGEVAGKLVLLPSTFQE 834
+ ++S N PQ TK +K + A + G G + L S +
Sbjct: 142 AEMKWLLSNTDNAAF-----PQMTKSYKNTRKDPALIIWGIHHSGSTTEQTKLYGSG-NK 195
Query: 835 LLDIGEKKF 843
L+ +G +
Sbjct: 196 LITVGSSNY 204
>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|B Chain B, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|C Chain C, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|D Chain D, Human Erythrocyte Pyruvate Kinase: R479h Mutant
Length = 528
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 316 TIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQET 357
T + ++F Q+ QLP + D L HLCL DSE + + T
Sbjct: 2 TQELGTAFFQQQQLPAAMADTFLEHLCL-LDIDSEPVAARST 42
>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|B Chain B, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|C Chain C, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|D Chain D, Human Erythrocyte Pyruvate Kinase: R486w Mutant
Length = 528
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 316 TIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQET 357
T + ++F Q+ QLP + D L HLCL DSE + + T
Sbjct: 2 TQELGTAFFQQQQLPAAMADTFLEHLCL-LDIDSEPVAARST 42
>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|B Chain B, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|C Chain C, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|D Chain D, Human Erythrocyte Pyruvate Kinase
Length = 528
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 316 TIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQET 357
T + ++F Q+ QLP + D L HLCL DSE + + T
Sbjct: 2 TQELGTAFFQQQQLPAAMADTFLEHLCL-LDIDSEPVAARST 42
>pdb|2VGF|A Chain A, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|B Chain B, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|C Chain C, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|D Chain D, Human Erythrocyte Pyruvate Kinase: T384m Mutant
Length = 528
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 316 TIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQET 357
T + ++F Q+ QLP + D L HLCL DSE + + T
Sbjct: 2 TQELGTAFFQQQQLPAAMADTFLEHLCL-LDIDSEPVAARST 42
>pdb|4IP7|A Chain A, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|B Chain B, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|C Chain C, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|D Chain D, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp
Length = 543
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 316 TIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQET 357
T + ++F Q+ QLP + D L HLCL DSE + + T
Sbjct: 17 TQELGTAFFQQQQLPAAMADTFLEHLCL-LDIDSEPVAARST 57
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|B Chain B, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|C Chain C, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|D Chain D, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
Length = 543
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 316 TIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQET 357
T + ++F Q+ QLP + D L HLCL DSE + + T
Sbjct: 17 TQELGTAFFQQQQLPAAMADTFLEHLCL-LDIDSEPVAARST 57
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 374 FYSLMDKVY----LFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVD 429
F S MD++ +F+GV + L +++ FP V + E YI+++G V
Sbjct: 22 FQSHMDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVK 81
Query: 430 L-LVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRT 467
+ +G E ++ ++ GE+ + P+ + T
Sbjct: 82 IGRRAPDGRENLLTIXGPSDMFGELSIFDPGPRTSSATT 120
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTR-EMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTV GD P T +F IL++ +GL
Sbjct: 31 LRPIDALYFSVVTLTTV--GDTPPPQTDFGKIFTILYIFIGIGL 72
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 254 SMYWSITTLTTVGYGDLHPVN 274
+ +W++ ++TTVGYGD+ P
Sbjct: 364 AFWWAVVSMTTVGYGDMVPTT 384
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 254 SMYWSITTLTTVGYGDLHPVN 274
+ +W++ ++TTVGYGD+ P
Sbjct: 364 AFWWAVVSMTTVGYGDMVPTT 384
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 254 SMYWSITTLTTVGYGDLHPVN 274
+ +W++ ++TTVGYGD+ P
Sbjct: 379 AFWWAVVSMTTVGYGDMVPTT 399
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 254 SMYWSITTLTTVGYGDLHPVN 274
+ +W++ ++TTVGYGD+ P
Sbjct: 379 AFWWAVVSMTTVGYGDMVPTT 399
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 374 FYSLMDKVY----LFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVD 429
F S MD++ +F+GV + L +++ FP V + E YI+++G V
Sbjct: 22 FQSHMDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVK 81
Query: 430 L-LVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRT 467
+ +G E ++ ++ GE+ + P+ + T
Sbjct: 82 IGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATT 120
>pdb|3M5G|A Chain A, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
pdb|3M5G|C Chain C, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
pdb|3M5G|E Chain E, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
pdb|3M5H|A Chain A, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With 3sln
pdb|3M5H|C Chain C, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With 3sln
pdb|3M5H|E Chain E, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With 3sln
pdb|3M5I|A Chain A, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With 6sln
pdb|3M5I|C Chain C, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With 6sln
pdb|3M5I|E Chain E, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With 6sln
pdb|3M5J|A Chain A, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With Lstb
pdb|3M5J|C Chain C, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With Lstb
pdb|3M5J|E Chain E, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With Lstb
Length = 317
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 725 VAERPQQEVHYLGRFTSEPAIRPI----------THEVSFEGVDGSGSQNHSRRRTNNFH 774
+ R ++ Y GRFT+E ++R I + ++ G+ +G+ + R ++F+
Sbjct: 82 IERREGTDICYPGRFTNEESLRQILRRSGGIGKESMGFTYSGIRTNGATSACTRSGSSFY 141
Query: 775 NSLFGIMSAAHNVEKDILFPPQHTKVFKAP 804
+ ++S + N PQ TK ++ P
Sbjct: 142 AEMKWLLSNSDNAAF-----PQMTKAYRNP 166
>pdb|3GYD|A Chain A, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
pdb|3GYD|B Chain B, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
Length = 187
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 377 LMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILV-TGAVDLLV-LK 434
+++K+ LF SN+ + L S + Y P++ +L P D+ +L+ TG V+++ +
Sbjct: 40 IVNKIKLFGDFSNEEVRYLCSYXQC-YAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIP 98
Query: 435 NGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTI 494
N Q + + G I GE + P+ + + L+R ++ G
Sbjct: 99 NKGIQTIAKVGAGAIIGEXSXIDGXPRSASCVASLPTDFAVLSRDALYQLLANXPKLGNK 158
Query: 495 IMNNLLQHL 503
++ LLQ L
Sbjct: 159 VLIRLLQLL 167
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVG P +F IL++ +GL
Sbjct: 31 LRPIDALYFSVVTLTTVG-NTPPPQTDFGKIFTILYIFIGIGL 72
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 29.3 bits (64), Expect = 9.0, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTR-EMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTV G+ P T +F IL++ +GL
Sbjct: 31 LRPIDALYFSVVTLTTV--GETPPPQTDFGKIFTILYIFIGIGL 72
>pdb|3P1Y|A Chain A, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|B Chain B, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|C Chain C, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|D Chain D, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
Length = 315
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 50 VKLRRFIVSPYDRRYRVWETYLVL-LVIYTAWASPFEFGFLRKPQRPLSVIDNVVNGFFA 108
VK R + +DRRY V+ V+ T F+FG + R + +D++ + +
Sbjct: 216 VKRAREVERNFDRRYEVYRNLKERGFVVKTG----FKFGSEFRVYRKVESVDDLPHSEYL 271
Query: 109 VDIILTFFVAYLD--KATYLLVDCPKQIAWKYASSWLVFDVIST 150
VDI + + +D +A L + K++ + Y ++L F+ +
Sbjct: 272 VDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYLCFERVKV 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,734,482
Number of Sequences: 62578
Number of extensions: 1057913
Number of successful extensions: 3123
Number of sequences better than 100.0: 220
Number of HSP's better than 100.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 2250
Number of HSP's gapped (non-prelim): 572
length of query: 883
length of database: 14,973,337
effective HSP length: 107
effective length of query: 776
effective length of database: 8,277,491
effective search space: 6423333016
effective search space used: 6423333016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)