Query 002763
Match_columns 883
No_of_seqs 771 out of 5439
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:37:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03192 Voltage-dependent pot 100.0 6E-127 1E-131 1162.2 83.5 779 31-877 26-820 (823)
2 KOG0498 K+-channel ERG and rel 100.0 2.5E-88 5.5E-93 767.3 46.8 559 34-595 44-642 (727)
3 KOG0500 Cyclic nucleotide-gate 100.0 2.4E-60 5.1E-65 497.4 33.0 417 71-498 3-433 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 1.5E-59 3.2E-64 494.1 29.1 456 34-500 190-670 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 4.3E-56 9.4E-61 470.1 29.5 431 56-505 219-658 (815)
6 KOG3713 Voltage-gated K+ chann 100.0 1.1E-35 2.4E-40 316.2 13.4 280 11-321 126-448 (477)
7 KOG4412 26S proteasome regulat 100.0 4E-34 8.7E-39 261.7 13.6 181 520-701 29-213 (226)
8 KOG4412 26S proteasome regulat 100.0 5.5E-32 1.2E-36 247.7 14.0 191 528-718 2-198 (226)
9 PHA02791 ankyrin-like protein; 100.0 6.1E-31 1.3E-35 277.2 23.5 190 525-718 26-220 (284)
10 PHA02791 ankyrin-like protein; 100.0 4.1E-29 8.9E-34 263.4 21.6 185 528-719 60-247 (284)
11 PHA03100 ankyrin repeat protei 100.0 8.6E-29 1.9E-33 287.5 21.8 195 524-718 101-309 (480)
12 PHA02878 ankyrin repeat protei 100.0 2E-28 4.3E-33 283.0 23.9 206 526-737 34-308 (477)
13 KOG0509 Ankyrin repeat and DHH 100.0 2.8E-29 6E-34 273.6 15.7 186 532-717 47-237 (600)
14 PHA02875 ankyrin repeat protei 100.0 2.3E-28 4.9E-33 278.0 23.7 193 526-718 32-228 (413)
15 PHA02946 ankyin-like protein; 100.0 5.4E-28 1.2E-32 273.8 24.6 194 522-717 65-268 (446)
16 KOG0509 Ankyrin repeat and DHH 100.0 1.2E-28 2.7E-33 268.6 17.1 179 524-702 73-255 (600)
17 PHA02874 ankyrin repeat protei 100.0 6.5E-28 1.4E-32 275.5 23.4 178 527-704 33-235 (434)
18 PHA02875 ankyrin repeat protei 100.0 6.5E-28 1.4E-32 274.2 22.8 189 530-718 3-194 (413)
19 KOG1545 Voltage-gated shaker-l 100.0 4.1E-30 8.8E-35 258.4 3.5 191 94-315 253-458 (507)
20 PHA02946 ankyin-like protein; 100.0 1.9E-27 4.1E-32 269.4 24.0 206 530-741 38-254 (446)
21 PHA02798 ankyrin-like protein; 100.0 7.6E-28 1.6E-32 278.6 21.2 203 517-719 59-318 (489)
22 PHA03100 ankyrin repeat protei 100.0 2.2E-27 4.8E-32 275.6 21.8 210 526-739 65-293 (480)
23 PHA02716 CPXV016; CPX019; EVM0 99.9 7.2E-27 1.6E-31 271.7 23.3 174 526-699 174-359 (764)
24 PHA02878 ankyrin repeat protei 99.9 9E-27 2E-31 269.2 22.7 170 544-715 149-324 (477)
25 PHA03095 ankyrin-like protein; 99.9 7.9E-27 1.7E-31 270.5 22.2 211 525-739 79-300 (471)
26 KOG0508 Ankyrin repeat protein 99.9 1.6E-27 3.4E-32 248.2 13.7 192 526-718 39-241 (615)
27 PHA02874 ankyrin repeat protei 99.9 1.2E-26 2.6E-31 265.1 22.4 191 525-717 120-314 (434)
28 PHA02795 ankyrin-like protein; 99.9 9.6E-27 2.1E-31 253.7 20.2 182 535-718 83-288 (437)
29 PHA02859 ankyrin repeat protei 99.9 2.5E-26 5.4E-31 233.9 20.7 172 529-703 21-203 (209)
30 KOG4390 Voltage-gated A-type K 99.9 4E-29 8.6E-34 253.1 0.0 281 14-326 128-432 (632)
31 PHA02989 ankyrin repeat protei 99.9 2E-26 4.2E-31 267.2 21.6 194 523-717 102-314 (494)
32 PHA02716 CPXV016; CPX019; EVM0 99.9 1.4E-26 3.1E-31 269.1 19.8 215 522-740 205-546 (764)
33 PHA03095 ankyrin-like protein; 99.9 3.1E-26 6.6E-31 265.5 22.1 195 524-718 112-316 (471)
34 PF11834 DUF3354: Domain of un 99.9 9.7E-27 2.1E-31 183.8 8.3 66 808-873 1-69 (69)
35 PHA02876 ankyrin repeat protei 99.9 1.5E-25 3.2E-30 270.4 22.7 209 525-737 269-484 (682)
36 PHA02876 ankyrin repeat protei 99.9 3.3E-25 7E-30 267.5 23.6 214 519-736 168-415 (682)
37 KOG0510 Ankyrin repeat protein 99.9 1.2E-25 2.5E-30 249.0 16.7 221 525-746 150-394 (929)
38 KOG0510 Ankyrin repeat protein 99.9 1.3E-25 2.8E-30 248.7 16.7 211 528-740 120-352 (929)
39 PHA02798 ankyrin-like protein; 99.9 9.1E-25 2E-29 252.9 23.1 207 529-739 36-301 (489)
40 PHA02989 ankyrin repeat protei 99.9 6.7E-25 1.5E-29 254.4 21.5 209 528-741 68-301 (494)
41 KOG0508 Ankyrin repeat protein 99.9 1.2E-25 2.6E-30 234.2 13.5 184 535-718 10-209 (615)
42 PLN03192 Voltage-dependent pot 99.9 2.6E-23 5.6E-28 254.1 35.4 175 540-718 505-681 (823)
43 PHA02917 ankyrin-like protein; 99.9 3.3E-24 7.2E-29 251.9 21.3 190 525-717 28-255 (661)
44 PHA02730 ankyrin-like protein; 99.9 9E-24 1.9E-28 241.1 20.3 190 524-713 36-258 (672)
45 PHA02917 ankyrin-like protein; 99.9 2.8E-23 6E-28 244.1 20.6 196 542-741 12-241 (661)
46 KOG4177 Ankyrin [Cell wall/mem 99.9 2.7E-24 5.8E-29 254.0 9.2 194 525-718 403-599 (1143)
47 PHA02859 ankyrin repeat protei 99.9 2.2E-22 4.8E-27 204.9 18.6 156 560-718 19-185 (209)
48 PHA02792 ankyrin-like protein; 99.9 3.3E-22 7.1E-27 225.9 18.3 214 519-736 95-450 (631)
49 KOG4177 Ankyrin [Cell wall/mem 99.9 1.8E-22 4E-27 238.6 15.1 191 527-717 438-631 (1143)
50 PHA02730 ankyrin-like protein; 99.9 9.5E-22 2.1E-26 224.7 20.0 206 513-719 219-525 (672)
51 KOG0502 Integral membrane anky 99.9 1.3E-22 2.9E-27 191.6 10.0 188 526-716 93-282 (296)
52 PHA02795 ankyrin-like protein; 99.9 9.4E-22 2E-26 214.8 16.7 189 543-740 63-265 (437)
53 PHA02792 ankyrin-like protein; 99.9 3.9E-21 8.5E-26 217.2 20.0 197 520-718 166-479 (631)
54 KOG0505 Myosin phosphatase, re 99.9 1.6E-21 3.5E-26 208.6 12.8 188 531-718 42-257 (527)
55 KOG0514 Ankyrin repeat protein 99.8 7.3E-21 1.6E-25 192.9 11.9 163 555-718 261-433 (452)
56 KOG1419 Voltage-gated K+ chann 99.8 3E-21 6.4E-26 205.6 8.7 264 50-341 79-353 (654)
57 TIGR00870 trp transient-recept 99.8 1.5E-20 3.3E-25 228.7 15.9 189 525-717 48-282 (743)
58 TIGR00870 trp transient-recept 99.8 1.8E-20 3.9E-25 228.1 16.2 210 528-741 16-269 (743)
59 PHA02741 hypothetical protein; 99.8 4.3E-20 9.3E-25 181.9 14.9 136 555-717 14-157 (169)
60 KOG0507 CASK-interacting adapt 99.8 1.4E-20 3.1E-25 207.5 11.7 186 514-700 67-262 (854)
61 KOG0505 Myosin phosphatase, re 99.8 1.3E-20 2.8E-25 201.7 11.0 201 512-713 50-284 (527)
62 PHA02743 Viral ankyrin protein 99.8 4.9E-20 1.1E-24 180.5 14.3 135 529-693 20-162 (166)
63 PHA02884 ankyrin repeat protei 99.8 1.7E-19 3.6E-24 190.1 18.0 150 529-717 33-187 (300)
64 PHA02741 hypothetical protein; 99.8 1.6E-19 3.6E-24 177.7 14.7 136 521-686 13-159 (169)
65 KOG0507 CASK-interacting adapt 99.8 1E-19 2.2E-24 200.9 13.9 192 525-717 45-246 (854)
66 KOG0502 Integral membrane anky 99.8 2.3E-20 5E-25 176.6 7.5 167 528-697 128-296 (296)
67 KOG0512 Fetal globin-inducing 99.8 9.8E-19 2.1E-23 159.7 15.9 143 530-703 64-209 (228)
68 PHA02736 Viral ankyrin protein 99.8 4.6E-19 1E-23 172.0 10.9 133 555-717 10-151 (154)
69 PHA02736 Viral ankyrin protein 99.8 8.1E-19 1.8E-23 170.3 11.9 133 524-686 12-153 (154)
70 PHA02884 ankyrin repeat protei 99.8 2.9E-18 6.3E-23 180.8 16.1 129 555-713 25-158 (300)
71 KOG0514 Ankyrin repeat protein 99.8 6.5E-19 1.4E-23 178.9 8.9 130 588-718 261-399 (452)
72 PHA02743 Viral ankyrin protein 99.8 4.9E-18 1.1E-22 166.4 14.3 108 519-626 47-159 (166)
73 KOG0195 Integrin-linked kinase 99.7 1.6E-17 3.6E-22 163.2 9.6 148 537-715 8-156 (448)
74 KOG0195 Integrin-linked kinase 99.7 1.8E-17 3.9E-22 162.9 8.8 134 503-667 8-141 (448)
75 PF12796 Ank_2: Ankyrin repeat 99.7 1.9E-16 4.1E-21 138.2 11.5 89 533-625 1-89 (89)
76 KOG0512 Fetal globin-inducing 99.7 1.6E-16 3.5E-21 145.2 11.0 132 509-670 77-209 (228)
77 KOG3676 Ca2+-permeable cation 99.7 2.6E-16 5.6E-21 177.0 13.7 185 531-715 103-331 (782)
78 KOG4369 RTK signaling protein 99.7 8.1E-17 1.8E-21 182.2 7.2 213 510-722 805-1057(2131)
79 cd00204 ANK ankyrin repeats; 99.6 4.5E-15 9.7E-20 138.0 16.0 125 557-712 2-126 (126)
80 KOG4369 RTK signaling protein 99.6 2.2E-16 4.8E-21 178.7 6.4 188 530-717 758-984 (2131)
81 PF12796 Ank_2: Ankyrin repeat 99.6 2.2E-15 4.8E-20 131.4 11.0 89 566-689 1-89 (89)
82 cd00204 ANK ankyrin repeats; 99.6 3.3E-14 7.2E-19 132.1 14.9 122 527-679 5-126 (126)
83 KOG3676 Ca2+-permeable cation 99.5 1.1E-13 2.4E-18 156.1 16.8 177 526-702 140-367 (782)
84 PRK09392 ftrB transcriptional 99.5 4.9E-14 1.1E-18 147.2 13.3 130 375-504 6-135 (236)
85 KOG4214 Myotrophin and similar 99.5 4.1E-14 8.9E-19 115.8 8.5 94 531-625 4-97 (117)
86 PF00520 Ion_trans: Ion transp 99.5 1.6E-14 3.5E-19 146.5 7.8 188 98-299 1-200 (200)
87 COG0666 Arp FOG: Ankyrin repea 99.5 2.5E-13 5.4E-18 140.7 14.2 134 554-715 65-203 (235)
88 COG0666 Arp FOG: Ankyrin repea 99.5 4.9E-13 1.1E-17 138.5 12.9 124 528-682 72-203 (235)
89 KOG1420 Ca2+-activated K+ chan 99.4 1.9E-14 4.2E-19 153.4 1.7 229 55-313 117-351 (1103)
90 cd00038 CAP_ED effector domain 99.4 1.1E-12 2.3E-17 119.8 11.8 113 383-495 1-114 (115)
91 PRK11753 DNA-binding transcrip 99.4 1.6E-12 3.4E-17 133.5 13.6 120 385-504 6-127 (211)
92 PF13857 Ank_5: Ankyrin repeat 99.4 3E-13 6.5E-18 105.8 4.7 55 548-602 1-56 (56)
93 KOG4214 Myotrophin and similar 99.4 9.8E-13 2.1E-17 107.8 7.4 104 565-700 5-108 (117)
94 PF00027 cNMP_binding: Cyclic 99.4 2.1E-12 4.5E-17 112.9 9.0 90 401-490 1-91 (91)
95 PF13857 Ank_5: Ankyrin repeat 99.4 5.9E-13 1.3E-17 104.1 4.6 55 645-699 1-56 (56)
96 KOG1113 cAMP-dependent protein 99.4 1.2E-12 2.7E-17 134.2 8.1 125 375-503 121-245 (368)
97 PTZ00322 6-phosphofructo-2-kin 99.3 3.4E-12 7.4E-17 151.9 12.5 105 565-700 85-196 (664)
98 KOG1710 MYND Zn-finger and ank 99.3 4.3E-12 9.3E-17 125.5 11.0 88 530-617 13-101 (396)
99 smart00100 cNMP Cyclic nucleot 99.3 1.1E-11 2.3E-16 114.0 11.7 115 383-497 1-118 (120)
100 PTZ00322 6-phosphofructo-2-kin 99.3 6.8E-12 1.5E-16 149.3 12.4 96 530-625 83-185 (664)
101 PF07885 Ion_trans_2: Ion chan 99.3 7.7E-12 1.7E-16 105.8 9.0 77 208-304 2-78 (79)
102 PRK10402 DNA-binding transcrip 99.3 6.1E-12 1.3E-16 130.3 10.2 114 390-503 22-136 (226)
103 COG0664 Crp cAMP-binding prote 99.3 1.7E-11 3.8E-16 125.8 13.4 127 379-505 3-130 (214)
104 PF13637 Ank_4: Ankyrin repeat 99.3 4.4E-12 9.5E-17 98.7 6.5 54 562-615 1-54 (54)
105 KOG1710 MYND Zn-finger and ank 99.3 1.4E-11 3.1E-16 121.9 11.3 88 526-613 42-130 (396)
106 KOG0515 p53-interacting protei 99.3 7.9E-12 1.7E-16 132.9 9.7 91 532-622 553-643 (752)
107 COG2905 Predicted signal-trans 99.3 5.3E-11 1.1E-15 129.6 16.2 128 375-505 6-133 (610)
108 PF13637 Ank_4: Ankyrin repeat 99.3 8.6E-12 1.9E-16 97.0 6.1 54 529-582 1-54 (54)
109 KOG0614 cGMP-dependent protein 99.3 1E-11 2.2E-16 132.7 8.0 131 370-504 148-278 (732)
110 PRK11161 fumarate/nitrate redu 99.2 5.7E-11 1.2E-15 124.0 12.5 126 378-504 15-142 (235)
111 KOG0515 p53-interacting protei 99.2 2.4E-11 5.3E-16 129.3 8.5 92 628-719 552-643 (752)
112 KOG0614 cGMP-dependent protein 99.2 2.3E-11 4.9E-16 130.2 7.9 118 371-488 267-387 (732)
113 PLN02868 acyl-CoA thioesterase 99.1 3.4E-10 7.3E-15 127.8 13.3 113 375-489 7-119 (413)
114 TIGR03697 NtcA_cyano global ni 99.1 3.6E-10 7.7E-15 114.2 11.3 99 407-505 1-102 (193)
115 PRK09391 fixK transcriptional 99.1 5.9E-10 1.3E-14 115.6 10.0 109 394-505 33-142 (230)
116 PRK13918 CRP/FNR family transc 99.0 2.1E-09 4.5E-14 109.5 10.2 100 398-504 5-107 (202)
117 KOG1113 cAMP-dependent protein 99.0 9.5E-10 2E-14 113.4 6.7 115 371-488 235-349 (368)
118 PRK10537 voltage-gated potassi 98.9 1.3E-08 2.8E-13 112.4 15.9 54 250-303 168-221 (393)
119 KOG0506 Glutaminase (contains 98.9 2.3E-09 5E-14 113.2 5.7 93 527-619 504-597 (622)
120 KOG0506 Glutaminase (contains 98.9 2.4E-09 5.2E-14 113.1 5.4 90 628-717 508-598 (622)
121 KOG0818 GTPase-activating prot 98.8 4.2E-08 9.2E-13 104.3 11.4 88 529-616 133-221 (669)
122 KOG0818 GTPase-activating prot 98.7 7.1E-08 1.5E-12 102.6 9.1 87 628-714 135-222 (669)
123 PF13606 Ank_3: Ankyrin repeat 98.7 3E-08 6.4E-13 66.0 4.0 30 561-590 1-30 (30)
124 KOG3684 Ca2+-activated K+ chan 98.7 3.2E-07 6.9E-12 97.9 13.7 93 247-347 284-376 (489)
125 KOG0782 Predicted diacylglycer 98.6 6.7E-08 1.5E-12 104.0 8.5 121 568-717 872-992 (1004)
126 PF00023 Ank: Ankyrin repeat H 98.6 5.6E-08 1.2E-12 66.7 4.3 33 561-593 1-33 (33)
127 PF13606 Ank_3: Ankyrin repeat 98.6 5.3E-08 1.2E-12 64.8 4.0 30 658-687 1-30 (30)
128 KOG0705 GTPase-activating prot 98.6 1.6E-07 3.5E-12 101.8 8.5 92 531-622 626-721 (749)
129 KOG0783 Uncharacterized conser 98.5 4.7E-08 1E-12 109.8 4.0 82 523-604 46-128 (1267)
130 KOG0705 GTPase-activating prot 98.5 2.1E-07 4.6E-12 100.9 7.8 93 626-718 624-720 (749)
131 PF00023 Ank: Ankyrin repeat H 98.5 1.4E-07 3.1E-12 64.7 4.3 33 658-690 1-33 (33)
132 KOG0522 Ankyrin repeat protein 98.5 2.7E-07 5.7E-12 100.1 7.9 88 530-617 21-110 (560)
133 KOG0783 Uncharacterized conser 98.5 6.6E-08 1.4E-12 108.7 3.3 99 540-669 28-129 (1267)
134 KOG0782 Predicted diacylglycer 98.4 6.8E-07 1.5E-11 96.4 8.4 118 532-680 869-988 (1004)
135 KOG3609 Receptor-activated Ca2 98.3 2.1E-06 4.6E-11 98.6 10.8 131 531-689 27-161 (822)
136 KOG0522 Ankyrin repeat protein 98.3 1.2E-06 2.7E-11 95.0 7.8 67 649-715 45-111 (560)
137 KOG0520 Uncharacterized conser 98.2 1.8E-06 4E-11 101.2 6.4 131 525-681 570-702 (975)
138 KOG2968 Predicted esterase of 98.2 1.3E-06 2.8E-11 99.8 4.7 114 390-503 499-613 (1158)
139 KOG0511 Ankyrin repeat protein 98.1 4.9E-06 1.1E-10 86.2 7.3 73 530-602 37-109 (516)
140 KOG2384 Major histocompatibili 98.1 4.9E-06 1.1E-10 78.6 6.6 67 552-618 2-69 (223)
141 PF08412 Ion_trans_N: Ion tran 98.1 2.6E-06 5.6E-11 69.7 4.2 47 46-92 28-74 (77)
142 KOG0520 Uncharacterized conser 98.1 1.4E-05 3E-10 94.0 10.8 129 555-714 567-702 (975)
143 KOG0521 Putative GTPase activa 98.1 2.4E-06 5.2E-11 101.4 4.3 90 625-714 655-744 (785)
144 PF01007 IRK: Inward rectifier 98.0 2E-05 4.3E-10 85.0 9.6 96 204-307 41-143 (336)
145 KOG2384 Major histocompatibili 98.0 1.8E-05 3.8E-10 74.9 7.0 69 649-717 2-71 (223)
146 KOG0521 Putative GTPase activa 97.9 7.5E-06 1.6E-10 97.3 4.9 87 529-615 656-742 (785)
147 KOG2302 T-type voltage-gated C 97.9 0.00045 9.7E-09 79.8 18.2 128 52-191 1102-1246(1956)
148 KOG0511 Ankyrin repeat protein 97.9 3.3E-05 7.2E-10 80.2 8.1 61 565-625 39-99 (516)
149 KOG4404 Tandem pore domain K+ 97.9 8.2E-05 1.8E-09 76.4 10.3 59 250-308 186-252 (350)
150 KOG1418 Tandem pore domain K+ 97.9 6.5E-05 1.4E-09 86.0 10.8 57 250-306 115-171 (433)
151 KOG3609 Receptor-activated Ca2 97.8 5.9E-05 1.3E-09 87.0 9.0 129 562-718 25-157 (822)
152 KOG3193 K+ channel subunit [In 97.4 0.0002 4.3E-09 77.6 6.3 50 251-300 218-267 (1087)
153 PLN03223 Polycystin cation cha 97.4 0.0079 1.7E-07 73.1 18.9 58 58-115 1169-1234(1634)
154 KOG2968 Predicted esterase of 97.3 0.0012 2.5E-08 76.5 10.1 111 394-504 110-228 (1158)
155 KOG4404 Tandem pore domain K+ 97.0 0.00023 4.9E-09 73.3 0.7 52 249-300 79-130 (350)
156 PRK11832 putative DNA-binding 96.9 0.0066 1.4E-07 60.2 10.6 102 392-497 15-117 (207)
157 KOG3827 Inward rectifier K+ ch 96.8 0.0064 1.4E-07 64.5 9.5 96 203-306 66-170 (400)
158 KOG2505 Ankyrin repeat protein 96.8 0.0021 4.5E-08 69.8 5.8 71 640-713 405-481 (591)
159 KOG2505 Ankyrin repeat protein 96.7 0.0017 3.7E-08 70.5 4.6 62 542-603 404-471 (591)
160 smart00248 ANK ankyrin repeats 96.4 0.0051 1.1E-07 39.6 4.0 28 562-589 2-29 (30)
161 smart00248 ANK ankyrin repeats 96.2 0.0086 1.9E-07 38.4 4.0 29 658-686 1-29 (30)
162 KOG2301 Voltage-gated Ca2+ cha 96.1 0.021 4.6E-07 72.9 9.9 108 96-219 475-583 (1592)
163 PF04831 Popeye: Popeye protei 95.9 0.13 2.9E-06 47.8 11.5 105 386-494 14-125 (153)
164 KOG3614 Ca2+/Mg2+-permeable ca 95.9 0.2 4.3E-06 61.6 16.1 91 60-158 789-879 (1381)
165 KOG1418 Tandem pore domain K+ 95.7 0.0033 7.2E-08 71.9 0.7 47 250-296 242-296 (433)
166 PF03607 DCX: Doublecortin; I 95.1 0.033 7.1E-07 43.9 4.1 47 830-877 9-57 (60)
167 PF03158 DUF249: Multigene fam 94.7 0.17 3.6E-06 48.7 8.5 75 528-610 45-119 (192)
168 KOG2301 Voltage-gated Ca2+ cha 94.7 0.33 7.1E-06 62.6 13.8 113 66-196 841-957 (1592)
169 KOG3542 cAMP-regulated guanine 94.7 0.088 1.9E-06 59.2 7.6 111 373-487 278-390 (1283)
170 PF02017 CIDE-N: CIDE-N domain 94.6 0.081 1.7E-06 43.6 5.4 56 818-876 12-73 (78)
171 cd01615 CIDE_N CIDE_N domain, 94.4 0.092 2E-06 43.1 5.3 55 819-876 13-73 (78)
172 KOG3599 Ca2+-modulated nonsele 94.4 1.1 2.4E-05 54.2 16.5 180 94-311 498-683 (798)
173 PF06128 Shigella_OspC: Shigel 94.0 0.27 5.7E-06 48.6 8.5 48 637-684 228-279 (284)
174 smart00266 CAD Domains present 93.9 0.13 2.8E-06 41.7 5.1 54 820-876 12-71 (74)
175 cd06538 CIDE_N_FSP27 CIDE_N do 93.7 0.15 3.3E-06 41.9 5.3 56 818-876 12-72 (79)
176 cd06539 CIDE_N_A CIDE_N domain 93.4 0.2 4.4E-06 41.0 5.4 55 819-876 13-73 (78)
177 KOG0498 K+-channel ERG and rel 93.3 3.9 8.5E-05 48.8 18.1 47 579-625 593-639 (727)
178 smart00537 DCX Domain in the D 93.0 0.29 6.3E-06 42.0 6.3 70 807-877 4-81 (89)
179 cd06535 CIDE_N_CAD CIDE_N doma 92.8 0.24 5.1E-06 40.5 5.0 55 819-876 13-72 (77)
180 cd06537 CIDE_N_B CIDE_N domain 92.6 0.29 6.2E-06 40.3 5.3 58 821-881 15-79 (81)
181 PF03158 DUF249: Multigene fam 92.5 2.1 4.5E-05 41.5 11.7 137 565-713 49-191 (192)
182 cd06536 CIDE_N_ICAD CIDE_N dom 92.0 0.33 7.2E-06 40.1 5.0 55 819-876 13-75 (80)
183 PF00520 Ion_trans: Ion transp 90.7 1.4 3E-05 43.9 9.4 94 93-225 30-124 (200)
184 PF00060 Lig_chan: Ligand-gate 90.0 0.68 1.5E-05 43.9 6.1 76 246-327 40-115 (148)
185 PF06128 Shigella_OspC: Shigel 88.7 1.7 3.6E-05 43.2 7.5 90 530-620 180-279 (284)
186 PF08016 PKD_channel: Polycyst 88.7 3.9 8.6E-05 46.6 12.1 51 170-222 306-356 (425)
187 KOG2302 T-type voltage-gated C 86.3 9.2 0.0002 45.9 12.8 53 65-118 1441-1495(1956)
188 cd01617 DCX Ubiquitin-like dom 83.3 4 8.8E-05 34.2 6.3 68 809-877 1-76 (80)
189 KOG3542 cAMP-regulated guanine 81.2 2.3 5.1E-05 48.4 5.2 103 362-476 23-125 (1283)
190 COG4709 Predicted membrane pro 77.6 14 0.00031 35.8 8.5 77 315-393 5-84 (195)
191 PF11929 DUF3447: Domain of un 77.5 3.1 6.8E-05 34.5 3.8 44 566-616 10-53 (76)
192 KOG4440 NMDA selective glutama 77.1 4.1 8.9E-05 46.2 5.5 97 204-305 572-668 (993)
193 PF11929 DUF3447: Domain of un 69.4 7.8 0.00017 32.1 4.3 48 530-584 7-54 (76)
194 PF08006 DUF1700: Protein of u 65.1 28 0.00061 34.3 8.1 58 314-373 4-64 (181)
195 PLN03223 Polycystin cation cha 63.1 75 0.0016 40.5 12.3 28 280-307 1399-1426(1634)
196 PF03671 Ufm1: Ubiquitin fold 62.0 14 0.0003 29.7 3.9 39 820-858 14-56 (76)
197 KOG0292 Vesicle coat complex C 56.9 28 0.00061 41.8 7.0 185 462-681 568-778 (1202)
198 PF07883 Cupin_2: Cupin domain 55.2 40 0.00086 26.9 6.1 43 403-450 4-47 (71)
199 cd01812 BAG1_N Ubiquitin-like 54.8 28 0.00061 28.0 5.1 47 829-875 19-71 (71)
200 PF14560 Ubiquitin_2: Ubiquiti 52.9 54 0.0012 27.8 6.7 63 810-872 3-80 (87)
201 KOG3713 Voltage-gated K+ chann 50.1 42 0.00092 37.8 6.9 35 81-118 263-297 (477)
202 cd01766 Ufm1 Urm1-like ubiquit 49.0 27 0.00058 28.1 3.6 38 821-858 15-56 (82)
203 COG3212 Predicted membrane pro 47.5 26 0.00056 33.1 4.1 34 827-871 80-113 (144)
204 cd00196 UBQ Ubiquitin-like pro 47.4 37 0.0008 25.5 4.6 46 829-874 17-68 (69)
205 cd01796 DDI1_N DNA damage indu 47.4 18 0.00039 29.4 2.7 43 830-872 20-69 (71)
206 TIGR01683 thiS thiamine biosyn 47.3 48 0.001 26.3 5.1 49 822-874 4-59 (64)
207 KOG1053 Glutamate-gated NMDA-t 46.4 2.3E+02 0.0051 34.6 12.1 61 255-322 616-676 (1258)
208 PF10011 DUF2254: Predicted me 45.6 84 0.0018 35.0 8.5 58 249-306 99-156 (371)
209 KOG0500 Cyclic nucleotide-gate 45.2 5.2E+02 0.011 29.5 18.1 81 356-441 256-362 (536)
210 PLN03219 uncharacterized prote 45.1 56 0.0012 28.8 5.4 39 806-846 39-83 (108)
211 cd00565 ThiS ThiaminS ubiquiti 44.4 47 0.001 26.4 4.7 49 822-874 5-60 (65)
212 cd00754 MoaD Ubiquitin domain 44.1 41 0.00089 27.8 4.5 51 824-874 18-75 (80)
213 KOG1052 Glutamate-gated kainat 43.7 46 0.001 40.3 6.7 54 251-305 382-435 (656)
214 PRK10582 cytochrome o ubiquino 43.1 1.8E+02 0.0039 26.0 8.4 86 135-222 15-100 (109)
215 PRK05659 sulfur carrier protei 42.4 60 0.0013 25.8 5.0 49 822-874 6-61 (66)
216 PRK07440 hypothetical protein; 41.9 69 0.0015 26.0 5.3 49 822-874 10-65 (70)
217 PRK06437 hypothetical protein; 41.6 40 0.00088 27.1 3.9 41 830-874 21-62 (67)
218 cd01799 Hoil1_N Ubiquitin-like 40.9 25 0.00053 29.1 2.6 42 830-872 23-72 (75)
219 COG3718 IolB Uncharacterized e 40.1 60 0.0013 32.8 5.4 67 399-478 31-110 (270)
220 cd01804 midnolin_N Ubiquitin-l 39.2 30 0.00065 28.8 2.9 44 830-876 22-73 (78)
221 smart00835 Cupin_1 Cupin. This 37.2 71 0.0015 30.1 5.6 54 399-452 32-87 (146)
222 KOG1054 Glutamate-gated AMPA-t 36.1 36 0.00077 38.9 3.6 53 251-304 596-648 (897)
223 TIGR02847 CyoD cytochrome o ub 35.2 3E+02 0.0066 24.0 8.4 85 135-221 4-88 (96)
224 PF07697 7TMR-HDED: 7TM-HD ext 33.6 3.1E+02 0.0067 27.6 10.1 59 359-418 146-207 (222)
225 PF14377 DUF4414: Domain of un 32.8 90 0.002 27.8 5.1 49 322-372 48-105 (108)
226 PLN03220 uncharacterized prote 32.6 69 0.0015 28.2 4.0 40 807-846 36-81 (105)
227 COG0581 PstA ABC-type phosphat 32.3 3.9E+02 0.0085 28.5 10.4 49 273-321 67-115 (292)
228 PRK08364 sulfur carrier protei 31.7 82 0.0018 25.5 4.2 41 830-874 24-65 (70)
229 KOG2378 cAMP-regulated guanine 31.4 38 0.00081 37.5 2.8 44 446-489 1-45 (573)
230 TIGR03037 anthran_nbaC 3-hydro 31.0 1.1E+02 0.0024 29.3 5.5 58 417-480 48-105 (159)
231 PRK09108 type III secretion sy 30.8 4.3E+02 0.0093 29.2 10.9 62 276-337 178-239 (353)
232 KOG3533 Inositol 1,4,5-trispho 30.3 1.4E+03 0.029 30.0 19.2 65 248-312 2500-2578(2706)
233 PRK08156 type III secretion sy 29.3 5.5E+02 0.012 28.5 11.3 59 279-337 174-232 (361)
234 PF08817 YukD: WXG100 protein 29.2 1.2E+02 0.0025 25.2 4.9 63 809-872 3-78 (79)
235 TIGR00933 2a38 potassium uptak 28.9 1.1E+02 0.0023 34.5 6.1 43 249-291 230-274 (390)
236 PHA03239 envelope glycoprotein 28.4 3.7E+02 0.008 30.3 9.8 55 265-319 318-373 (429)
237 cd01792 ISG15_repeat1 ISG15 ub 27.6 83 0.0018 26.1 3.8 47 829-875 22-76 (80)
238 TIGR02901 QoxD cytochrome aa3 27.4 3.8E+02 0.0083 23.3 7.7 85 135-221 6-90 (94)
239 PRK13109 flhB flagellar biosyn 27.3 6E+02 0.013 28.1 11.3 59 279-337 188-246 (358)
240 PRK06488 sulfur carrier protei 26.6 1.5E+02 0.0032 23.5 4.9 49 822-874 6-60 (65)
241 KOG1709 Guanidinoacetate methy 26.6 55 0.0012 32.9 2.7 41 679-719 2-42 (271)
242 TIGR01404 FlhB_rel_III type II 26.2 6.4E+02 0.014 27.7 11.2 61 277-337 176-236 (342)
243 PRK12468 flhB flagellar biosyn 26.1 5.9E+02 0.013 28.5 11.0 59 279-337 186-244 (386)
244 PRK08053 sulfur carrier protei 26.1 1.5E+02 0.0033 23.6 4.8 49 822-874 6-61 (66)
245 KOG1545 Voltage-gated shaker-l 25.7 1.7E+02 0.0037 31.6 6.3 26 169-194 322-347 (507)
246 PF13314 DUF4083: Domain of un 25.5 3.1E+02 0.0068 21.3 5.9 13 312-324 43-55 (58)
247 cd01808 hPLIC_N Ubiquitin-like 25.5 79 0.0017 25.5 3.2 43 829-873 19-69 (71)
248 PF05899 Cupin_3: Protein of u 25.4 1.3E+02 0.0028 24.6 4.4 30 418-451 26-55 (74)
249 PRK05702 flhB flagellar biosyn 25.4 6.8E+02 0.015 27.7 11.3 29 276-304 183-211 (359)
250 TIGR00769 AAA ADP/ATP carrier 25.3 4.2E+02 0.009 30.6 10.0 55 208-291 123-178 (472)
251 TIGR01687 moaD_arch MoaD famil 25.3 58 0.0013 27.6 2.4 45 830-874 25-83 (88)
252 TIGR00328 flhB flagellar biosy 25.0 7.1E+02 0.015 27.4 11.3 62 276-337 176-237 (347)
253 PF02597 ThiS: ThiS family; I 25.0 95 0.0021 25.3 3.7 46 829-874 21-72 (77)
254 PF04791 LMBR1: LMBR1-like mem 24.9 1.1E+03 0.023 27.1 16.2 25 280-304 170-194 (471)
255 PRK12721 secretion system appa 24.9 5.8E+02 0.012 28.2 10.6 62 276-337 176-237 (349)
256 PRK07696 sulfur carrier protei 24.7 1.6E+02 0.0035 23.6 4.8 49 822-874 6-62 (67)
257 KOG3836 HLH transcription fact 23.9 21 0.00045 41.1 -0.7 54 536-589 403-456 (605)
258 cd01806 Nedd8 Nebb8-like ubiq 23.8 1E+02 0.0022 25.0 3.6 47 829-875 20-72 (76)
259 PRK06944 sulfur carrier protei 23.8 1.7E+02 0.0036 23.0 4.7 50 821-874 5-60 (65)
260 COG0662 {ManC} Mannose-6-phosp 23.4 1.6E+02 0.0034 27.1 5.1 48 398-450 37-85 (127)
261 PRK13264 3-hydroxyanthranilate 22.9 1.7E+02 0.0037 28.6 5.3 60 415-480 52-111 (177)
262 cd01805 RAD23_N Ubiquitin-like 22.4 2.3E+02 0.005 23.0 5.5 44 830-873 21-72 (77)
263 KOG2982 Uncharacterized conser 22.1 1.6E+02 0.0035 31.3 5.2 68 804-871 332-413 (418)
264 cd01763 Sumo Small ubiquitin-r 21.8 3.8E+02 0.0082 22.6 6.8 66 808-874 9-82 (87)
265 KOG0513 Ca2+-independent phosp 21.8 18 0.0004 41.6 -1.7 44 629-672 139-182 (503)
266 TIGR02908 CoxD_Bacillus cytoch 21.5 5.9E+02 0.013 22.8 8.1 56 135-190 25-80 (110)
267 PRK06298 type III secretion sy 21.4 9.1E+02 0.02 26.7 11.2 17 530-550 327-343 (356)
268 cd01809 Scythe_N Ubiquitin-lik 21.2 2.3E+02 0.0049 22.6 5.2 44 829-873 20-70 (72)
269 cd01807 GDX_N ubiquitin-like d 21.0 1E+02 0.0022 25.1 3.0 44 830-874 21-71 (74)
270 PRK13290 ectC L-ectoine syntha 21.0 1.7E+02 0.0037 26.9 4.7 69 400-476 38-106 (125)
271 COG2104 ThiS Sulfur transfer p 20.8 2.2E+02 0.0049 23.0 4.8 49 822-874 8-63 (68)
272 PF02175 7TM_GPCR_Srb: Serpent 20.8 9.3E+02 0.02 24.8 17.1 97 58-154 2-105 (236)
273 PF02037 SAP: SAP domain; Int 20.7 2.2E+02 0.0048 19.5 4.1 26 316-341 5-35 (35)
274 PHA01757 hypothetical protein 20.3 4.3E+02 0.0094 21.8 6.1 47 274-321 4-50 (98)
275 PRK07668 hypothetical protein; 20.2 3.4E+02 0.0074 28.3 7.2 62 311-372 4-66 (254)
276 PF08016 PKD_channel: Polycyst 20.1 8.5E+02 0.018 27.5 11.4 20 94-113 242-261 (425)
277 PF14377 DUF4414: Domain of un 20.1 1.9E+02 0.0041 25.7 4.7 49 328-376 8-68 (108)
No 1
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=6.3e-127 Score=1162.22 Aligned_cols=779 Identities=48% Similarity=0.811 Sum_probs=691.4
Q ss_pred ccccCCCCCCCCccc--cccccccCCeEECCCChhHHHHHHHHHHHHHHHHHHhhhhhccccC-CCCCceehhhHhHHHH
Q 002763 31 HYSLSTGVLPSLGAR--SNRRVKLRRFIVSPYDRRYRVWETYLVLLVIYTAWASPFEFGFLRK-PQRPLSVIDNVVNGFF 107 (883)
Q Consensus 31 ~~~~~~~~~~~~~~~--~~~~~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~-~~~~~~~i~~~~~~~F 107 (883)
.-+.+.+++|++|.+ .+++.+.++|+|+|+++++++|+++++++++|++|++||+++|... ....++++|++++++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~~~~~~d~i~~~~F 105 (823)
T PLN03192 26 LRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNVVDLFF 105 (823)
T ss_pred hhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCCCCCCeeeHHHHHHHHH
Confidence 445778999999987 5778889999999999999999999999999999999999999654 3446889999999999
Q ss_pred HHhhheeeeEEEEeCCeeEEEeCHHHHHHHHhhhhhHHHHHhccchhhhhhhCCCc---chhhhHHHHHHHHHHHHHHHH
Q 002763 108 AVDIILTFFVAYLDKATYLLVDCPKQIAWKYASSWLVFDVISTIPSELAQKISPKP---LQSYGLFNMLRLWRLRRVSAL 184 (883)
Q Consensus 108 ~~Di~l~f~~ay~~~~~~~~v~~~~~i~~~Yl~~~f~iDlis~iP~~~~~~~~~~~---~~~~~~l~~lRl~Rl~r~~~~ 184 (883)
++||+++|+++|+++++.++|+||++|+++|+|+||++|++|++|++++..+.... ...+.+++++|++|+.|+.++
T Consensus 106 ~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~ 185 (823)
T PLN03192 106 AVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQL 185 (823)
T ss_pred HHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998875543322 235678899999999999999
Q ss_pred HHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCccccccCCcccccchhHHHHHHHHHHhhhhhc
Q 002763 185 FSRLEKDRNYNYFWVRCCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTT 264 (883)
Q Consensus 185 ~~~l~~~~~~~~~~~~~~~l~~~~l~~~h~~aci~~~i~~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~s~ywai~T~tT 264 (883)
++++++..++++.+.+++++++++++++||+||+||+++..++..+.+|++... .++.+.++|.+|+.|+||+++||||
T Consensus 186 ~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~-~~~~~~s~~~~Yi~slYwai~TmtT 264 (823)
T PLN03192 186 FTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVI-PNFRETSLWIRYISAIYWSITTMTT 264 (823)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhh-hccccCcHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998777777889998643 6778899999999999999999999
Q ss_pred cccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 002763 265 VGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQMLAHLCLK 344 (883)
Q Consensus 265 VGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~~~~~~ 344 (883)
|||||++|.|..|++|++++|++|++++||++|+|++++.+.++++++|+++++.+++||+++++|++||+||++|++++
T Consensus 265 VGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~ 344 (823)
T PLN03192 265 VGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLR 344 (823)
T ss_pred ccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchHHHHHhhchHHHHHHHHHHHHHhHhhhccccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEE
Q 002763 345 FRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILV 424 (883)
Q Consensus 345 ~~~~~~~~~~~~~l~~Lp~~lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~ 424 (883)
|+. ++.++++++++||++||.+|+++++.++++++++|+++|++++.+|+..+++++|+|||.|+.|||.++++|||+
T Consensus 345 ~~~--~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~ 422 (823)
T PLN03192 345 FKA--ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVV 422 (823)
T ss_pred Hhh--ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEE
Confidence 976 467889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EceEEEEEEeCCceEEEEEecCCCeeehhhhhcCCCceeEEEEccceeEEeechhhHHHHHhhcccchHHHHHHHHhhhc
Q 002763 425 TGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLK 504 (883)
Q Consensus 425 ~G~v~i~~~~~~~~~~i~~l~~g~~fGe~~ll~~~p~~~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~lk 504 (883)
+|+|+++...++++.++..+++|++|||++++++.|++++++|.+.|++++|++++|.++++.+|++...+++++.++.+
T Consensus 423 ~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~ 502 (823)
T PLN03192 423 SGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHK 502 (823)
T ss_pred ecEEEEEEecCCcceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99999988777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhhhhhhHHHHHhcCCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 002763 505 DLKDPIMEGVLLETENMLARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDY 584 (883)
Q Consensus 505 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ 584 (883)
+++++.+...+.+.+.. .++.++.++||.||..||.++++.|+++|+|+|..|.+|+||||+||.+|+.+++++|+++
T Consensus 503 ~l~~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ 580 (823)
T PLN03192 503 ELHDLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKH 580 (823)
T ss_pred hhccccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhc
Confidence 99988877777665544 3455678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHH
Q 002763 585 EADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALH 664 (883)
Q Consensus 585 ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh 664 (883)
|+|+|.+|.+|+||||+|+..||.+++++|++.++..+..+.++++|.|+..|+.++++.|+++|+|+|.+|.+|.||||
T Consensus 581 gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh 660 (823)
T PLN03192 581 ACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQ 660 (823)
T ss_pred CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999888888889999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHhhcccccccccccccCCCcccccccccccCCC
Q 002763 665 VAVCEDNVEIVRFLLDQKADVDKPDVHG-WTPRDLADQQGHEEIKCIFQSCKETKAQSIISVAERPQQEVHYLGRFTSEP 743 (883)
Q Consensus 665 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g-~Tpl~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (883)
+|+..|+.+++++|+++|||++..|.+| .||++++...... +.... ..... ..+
T Consensus 661 ~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~~---------~~~~~---~~~~~-------------~~~ 715 (823)
T PLN03192 661 VAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKR---------ELGHS---ITIVD-------------SVP 715 (823)
T ss_pred HHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHHh---------hhCce---eeecc-------------CCC
Confidence 9999999999999999999999999988 9999887543221 11100 00000 000
Q ss_pred cccCCCccccccccCCCCCcccccccccccccchhhhcccccccccCCCCCCCCCcccCCCCCCCceEEEe--cCCC---
Q 002763 744 AIRPITHEVSFEGVDGSGSQNHSRRRTNNFHNSLFGIMSAAHNVEKDILFPPQHTKVFKAPGINSARVTIG--CPEK--- 818 (883)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rvti~--~p~~--- 818 (883)
...+ ... ..... ..+. .. .........+|++++ ||..
T Consensus 716 ~~~~---~~~--------~~~~~---------------------~~~~-~~-----~~~~~~~~~~~~~~~~~~p~~~~~ 757 (823)
T PLN03192 716 ADEP---DLG--------RDGGS---------------------RPGR-LQ-----GTSSDNQCRPRVSIYKGHPLLRNE 757 (823)
T ss_pred cccc---ccc--------ccccc---------------------cccc-cc-----ccccccccCceEEEecCCCccccc
Confidence 0000 000 00000 0000 00 000022345688888 7733
Q ss_pred --CccccEEEEccccHHHHHHHHhhhcCCCcc--eeecCCCCeeeeeeeeecCCEEEEEecCC
Q 002763 819 --GEVAGKLVLLPSTFQELLDIGEKKFGISPA--KVLNKGGAEVEDIEVIRDGDHLVFVSDGG 877 (883)
Q Consensus 819 --~~~~g~~~~~p~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 877 (883)
..++|+++++|+|++||+++|++||||++. .++++||||||||||||||||||+|+++.
T Consensus 758 ~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (823)
T PLN03192 758 RCCNEAGKLINLPPSLEELKAIAGEKLGFDARKAMVTNEEGAEIDSIEVIRDNDKLFVVEDED 820 (823)
T ss_pred ccccccCeEEeCCccHHHHHHHHHHHhCCCcccceeecCCCceeeeeEEEecCCEEEEeeccc
Confidence 236999999999999999999999999874 48999999999999999999999999853
No 2
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-88 Score=767.33 Aligned_cols=559 Identities=39% Similarity=0.625 Sum_probs=492.2
Q ss_pred cCCCCCC---CCccccccccccCCeEECCCChhHHHHHHHHHHHHHHHHHHhhhhhccccC----------CCCCceehh
Q 002763 34 LSTGVLP---SLGARSNRRVKLRRFIVSPYDRRYRVWETYLVLLVIYTAWASPFEFGFLRK----------PQRPLSVID 100 (883)
Q Consensus 34 ~~~~~~~---~~~~~~~~~~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~----------~~~~~~~i~ 100 (883)
.+.+.++ .......+..+...+|++|+|++++.|+.+++++++|++|+.|++++|... ...++.++|
T Consensus 44 ~s~~~~~~~~~~~~~~~~~~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d 123 (727)
T KOG0498|consen 44 LSLGLLPLGLGVPEYKERVDKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLD 123 (727)
T ss_pred ccccccccccCcchhhcccccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHH
Confidence 4444555 223334455666777999999999999999999999999999999999876 457789999
Q ss_pred hHhHHHHHHhhheeeeEEEEeCCeeEEEeCHHHHHHHHhhhhhHHHHHhccchhhhhhhCC--------CcchhhhHHHH
Q 002763 101 NVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYASSWLVFDVISTIPSELAQKISP--------KPLQSYGLFNM 172 (883)
Q Consensus 101 ~~~~~~F~~Di~l~f~~ay~~~~~~~~v~~~~~i~~~Yl~~~f~iDlis~iP~~~~~~~~~--------~~~~~~~~l~~ 172 (883)
.++|++|++||+++|+|||+++.++.+|.||++|++||+++||+||++|++|++.+..... .......++.+
T Consensus 124 ~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~ 203 (727)
T KOG0498|consen 124 TIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLL 203 (727)
T ss_pred HHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998876533 22246778899
Q ss_pred HHHHHHHHHHHHHHhhhhccchhH--HHHHHHHHHHHHHHHHHHHHHHhhhheeeec--CCCC-Cccccc----cCCc--
Q 002763 173 LRLWRLRRVSALFSRLEKDRNYNY--FWVRCCKLIFVTLFAVHCAGCFYYLLAARYH--NPER-TWIGAS----LGQN-- 241 (883)
Q Consensus 173 lRl~Rl~r~~~~~~~l~~~~~~~~--~~~~~~~l~~~~l~~~h~~aci~~~i~~~~~--~~~~-~w~~~~----~~~~-- 241 (883)
.||+|++|+..+++++++...+.+ .|.-++++++++++++||+||+||+++...+ .... +|+... ...+
T Consensus 204 ~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~ 283 (727)
T KOG0498|consen 204 QRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLS 283 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCccc
Confidence 999999999999999999988877 4555889999999999999999999998766 5555 999852 1233
Q ss_pred --ccccchhHHHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 002763 242 --FLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQA 319 (883)
Q Consensus 242 --~~~~~~~~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~ 319 (883)
+...+++.+|++|+||+++|||||||||.+|+|..|++|+|++|++|+++|||+||||+++++..++++++|+.++.+
T Consensus 284 ~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd 363 (727)
T KOG0498|consen 284 FTFGIYSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRD 363 (727)
T ss_pred ccccchhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhhhccccchHHHHHhhchHHHHHHHHHHHHHhHhhhccccccCCHHHHHHHHHhc
Q 002763 320 ASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEM 399 (883)
Q Consensus 320 ~~~~m~~~~lp~~l~~ri~~~~~~~~~~~~~~~~~~~~l~~Lp~~lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~l~~~~ 399 (883)
+++||++|+||++||+||++|++++|+.. +|.+++++|++||+.||++|++|+|.++++++|+|+++++.++++|+.++
T Consensus 364 ~e~~m~~~~LP~~LRqRi~~y~q~kw~~t-~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rl 442 (727)
T KOG0498|consen 364 AEQWMSRRQLPPDLRQRIRRYEQYKWLAT-RGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRL 442 (727)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhhc-cCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHh
Confidence 99999999999999999999999999874 79999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCeee-hhhhhcC-CCceeEEEEccceeEEeec
Q 002763 400 KAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICG-EIGVLCY-RPQLFTVRTKRLSQLLRLN 477 (883)
Q Consensus 400 ~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fG-e~~ll~~-~p~~~tv~a~~~~~l~~l~ 477 (883)
++++|+|||+|++|||++++||||++|.+++....+|.+.....|++||+|| |+...+. .|+++||+|.++|++++|+
T Consensus 443 k~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~ 522 (727)
T KOG0498|consen 443 KPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLS 522 (727)
T ss_pred hhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhcc
Confidence 9999999999999999999999999999999998888888899999999999 8899998 9999999999999999999
Q ss_pred hhhHHHHHhhcccchHHHHH---HHHhhhcccCCcchhhhhhhHH-HHHhcCCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q 002763 478 RTTFLNIVQANVGDGTIIMN---NLLQHLKDLKDPIMEGVLLETE-NMLARGRMDLPLSLCFAALRGDDLLLHQLLKRGL 553 (883)
Q Consensus 478 r~~f~~ll~~~~~~~~~i~~---~l~~~lk~~~~~~~~~~l~~~~-~~~~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~ 553 (883)
+++|.++++++|.++..+++ +++.+....- ....++.... ....++..+..-....++..++..-.+..+..+.
T Consensus 523 ~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~--aa~~iq~a~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 600 (727)
T KOG0498|consen 523 ADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTW--AACFIQAAWRRHIKRKGEEELALEEEESAIRGDDRGSKSLLRAGI 600 (727)
T ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhh--hhhhHHHHHHHHHHhhccchhhhhcchhhhccccccchhhhhccc
Confidence 99999999999999999999 4444433221 1223333333 3333333433333445666667667778888999
Q ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 002763 554 DPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDG 595 (883)
Q Consensus 554 d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g 595 (883)
.++..+.+|.+|+|.++..|..++...+++++++++..+..+
T Consensus 601 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~~ 642 (727)
T KOG0498|consen 601 LASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDFSDAEG 642 (727)
T ss_pred ccccccccCCCccccccccCccccccccCCCCCCCCcccccc
Confidence 999999999999999999999999999999999999988777
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-60 Score=497.39 Aligned_cols=417 Identities=23% Similarity=0.390 Sum_probs=373.0
Q ss_pred HHHHHHHHHHHhhhhhccccCCC---CCceehhhHhHHHHHHhhheeeeEEEEeCCeeEEEeCHHHHHHHHhhh-hhHHH
Q 002763 71 LVLLVIYTAWASPFEFGFLRKPQ---RPLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYASS-WLVFD 146 (883)
Q Consensus 71 ~~~~~~~~~~~~p~~~~f~~~~~---~~~~~i~~~~~~~F~~Di~l~f~~ay~~~~~~~~v~~~~~i~~~Yl~~-~f~iD 146 (883)
+.+.++|+.|+++..++|++-.. ..|..+|+++|++|++|+++|.+++|+++| ++|.+-++.++||..+ .|.+|
T Consensus 3 vs~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqG--llV~~~~Kl~~hY~~s~~f~lD 80 (536)
T KOG0500|consen 3 VSLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQG--LLVKDTSKLRKHYVHSTQFKLD 80 (536)
T ss_pred EEEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcC--eeehhhHHHHHHHHHhhhhhhh
Confidence 34568899999999888876543 346789999999999999999999999999 7899999999999966 47999
Q ss_pred HHhccchhhhhhhCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhheeee
Q 002763 147 VISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFAVHCAGCFYYLLAARY 226 (883)
Q Consensus 147 lis~iP~~~~~~~~~~~~~~~~~l~~lRl~Rl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~h~~aci~~~i~~~~ 226 (883)
++|++|++++++..+. ..+.|+.|++|+.|+..++.+.+....+... .++.+++...++++||.||+||+++...
T Consensus 81 ~l~liP~D~l~~~~~~----~~~~r~nRllk~yRl~~F~~rTetrT~~Pn~-fri~~lv~~~~ilfHWNaClYf~iS~~~ 155 (536)
T KOG0500|consen 81 VLSLIPLDLLLFKDGS----ASLERLNRLLKIYRLFEFFDRTETRTTYPNA-FRISKLVHYCLILFHWNACLYFLISKAI 155 (536)
T ss_pred hhhhcchhHHhhcCCc----chHHHHHHHHHHHHHHHHHHHhccccCCchH-HHHHHHHHHHHHHHHHhhHHHHhhhHhc
Confidence 9999999998876543 3456789999999999999999888777665 6899999999999999999999999887
Q ss_pred cCCCCCccccccC-Ccc---cccchhHHHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002763 227 HNPERTWIGASLG-QNF---LEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNL 302 (883)
Q Consensus 227 ~~~~~~w~~~~~~-~~~---~~~~~~~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~ 302 (883)
.....+|...... +.+ ...++..+|+.|+||+..||||+| --..|.|..|.+|.++=.++|+++||.++|+++++
T Consensus 156 g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsm 234 (536)
T KOG0500|consen 156 GFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSM 234 (536)
T ss_pred CccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHH
Confidence 7778889875321 222 224578899999999999999999 67889999999999999999999999999999999
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhccccchHHHHHhhchHHHHHHHHHHHHHhHhhhcc
Q 002763 303 VVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLMDKVY 382 (883)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~~~~~~~~~~~~~~~~~~~l~~Lp~~lr~~i~~~l~~~~l~~~~ 382 (883)
++++++...+|+++|+.++.||+.+++|..+|.|+.+|+.|.|..+ ...+++++++.||+.|+.+|+.+++.+.|++++
T Consensus 235 Vtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~-~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~ 313 (536)
T KOG0500|consen 235 VTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHK-KIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVR 313 (536)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcc-ccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999764 457999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCeeehhhhhc-----
Q 002763 383 LFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLC----- 457 (883)
Q Consensus 383 lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fGe~~ll~----- 457 (883)
+|+.+.+.++.+|+..++++.|.|||+|+++||.+.+||+|.+|.++++.. ||. .+...+++|++|||++++.
T Consensus 314 iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~d-Dg~-t~~~~L~~G~~FGEisIlni~g~~ 391 (536)
T KOG0500|consen 314 IFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVAD-DGV-TVFVTLKAGSVFGEISILNIKGNK 391 (536)
T ss_pred HHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEec-CCc-EEEEEecCCceeeeeEEEEEcCcc
Confidence 999999999999999999999999999999999999999999999999873 333 3567899999999999873
Q ss_pred -CCCceeEEEEccceeEEeechhhHHHHHhhcccchHHHHHH
Q 002763 458 -YRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNN 498 (883)
Q Consensus 458 -~~p~~~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~ 498 (883)
+..|++++++.++|+++.|+|+|+.+++++||+....+..+
T Consensus 392 ~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 392 NGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred cCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 56789999999999999999999999999999977666644
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-59 Score=494.05 Aligned_cols=456 Identities=22% Similarity=0.388 Sum_probs=390.8
Q ss_pred cCCCCCCCCccccccccccCCeEECCCChhHHHHHHHHHHHHHHHHHHhhhhhccccCC--CCCceehhhHhHHHHHHhh
Q 002763 34 LSTGVLPSLGARSNRRVKLRRFIVSPYDRRYRVWETYLVLLVIYTAWASPFEFGFLRKP--QRPLSVIDNVVNGFFAVDI 111 (883)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~--~~~~~~i~~~~~~~F~~Di 111 (883)
++.+++|.+ .+...|.+..||-.|..|+.+|+++++++-+|+++++||.++|-... ...|.++|.++|++|++||
T Consensus 190 Lg~DilPQY---rQEaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVDVIF~vDI 266 (971)
T KOG0501|consen 190 LGSDILPQY---RQEAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVDVIFFVDI 266 (971)
T ss_pred hccccchhh---hhcCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCceeEEEecchhhhhhhhhh
Confidence 455666666 33456778899999999999999999999999999999999997765 4568899999999999999
Q ss_pred heeeeEEEEeCCeeEEEeCHHHHHHHHhhhhhHHHHHhccchhhhhhhCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhc
Q 002763 112 ILTFFVAYLDKATYLLVDCPKQIAWKYASSWLVFDVISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKD 191 (883)
Q Consensus 112 ~l~f~~ay~~~~~~~~v~~~~~i~~~Yl~~~f~iDlis~iP~~~~~~~~~~~~~~~~~l~~lRl~Rl~r~~~~~~~l~~~ 191 (883)
+++|.|.|+-++++ +|.||+-|+.+|+|+||+||++||+|++++..+....-..-.+|..|++.|++|+.+..+++...
T Consensus 267 vLNFHTTFVGPgGE-VvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~Y 345 (971)
T KOG0501|consen 267 VLNFHTTFVGPGGE-VVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDHY 345 (971)
T ss_pred hhhcceeeecCCCc-eecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999984 77899999999999999999999999999998876555555666666666666666666665443
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecC-------CCCCcccc-------ccCCcc-------cccchhHH
Q 002763 192 RNYNYFWVRCCKLIFVTLFAVHCAGCFYYLLAARYHN-------PERTWIGA-------SLGQNF-------LEKSLWIR 250 (883)
Q Consensus 192 ~~~~~~~~~~~~l~~~~l~~~h~~aci~~~i~~~~~~-------~~~~w~~~-------~~~~~~-------~~~~~~~~ 250 (883)
+.|....++.++|++.++.||.||+||.++...-. ..++|+-. ++..+. .+.+--..
T Consensus 346 --lEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~ 423 (971)
T KOG0501|consen 346 --LEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSA 423 (971)
T ss_pred --HHhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccce
Confidence 34444577889999999999999999999863211 13467631 111111 12333456
Q ss_pred HHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHCCCC
Q 002763 251 YVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLP 330 (883)
Q Consensus 251 Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp 330 (883)
|+.|+||.++.|||||+|++.|.|..|++|++++|++|.++||.++|+++.+++++++.+.+|.+.++.+.+||+-.++|
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evP 503 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVP 503 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHhhchHHHHHHHHHHHHHhHhhhccccccCCHHHHHHHHHhchhhccCCCCeE
Q 002763 331 IRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDV 410 (883)
Q Consensus 331 ~~l~~ri~~~~~~~~~~~~~~~~~~~~l~~Lp~~lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~l~~~~~~~~~~~ge~I 410 (883)
+.|.+|+.+|.--.|.. ++|++.+++|..-|+.+|.+|+-|++.+..+..|.|+-.|+.+++.|+..++..+..||+.+
T Consensus 504 K~LsERVMDYvVSTWaM-tkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLl 582 (971)
T KOG0501|consen 504 KGLSERVMDYVVSTWAM-TKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLL 582 (971)
T ss_pred HHHHHHHHHHHHHHhhh-hcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCccee
Confidence 99999999999999977 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCeeehhhhhcC--CCceeEEEEccceeEEeechhhHHHHHhhc
Q 002763 411 ILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCY--RPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488 (883)
Q Consensus 411 ~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fGe~~ll~~--~p~~~tv~a~~~~~l~~l~r~~f~~ll~~~ 488 (883)
+..||..|.++||++|.++++.. +++++.|+.||+||+.--=.. ..+.++|||.++|.+..|.|+.+++++.-|
T Consensus 583 YHtGESvDaLcFvVsGSLEVIQD----DEVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFY 658 (971)
T KOG0501|consen 583 YHTGESVDALCFVVSGSLEVIQD----DEVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFY 658 (971)
T ss_pred eecCCccceEEEEEecceEEeec----CcEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHH
Confidence 99999999999999999999872 237899999999997521111 224588999999999999999999999888
Q ss_pred ccchHHHHHHHH
Q 002763 489 VGDGTIIMNNLL 500 (883)
Q Consensus 489 ~~~~~~i~~~l~ 500 (883)
..+...+-.|+.
T Consensus 659 tAFanSFaRNl~ 670 (971)
T KOG0501|consen 659 TAFANSFARNLT 670 (971)
T ss_pred HHHHHHhhhcee
Confidence 777766666654
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-56 Score=470.14 Aligned_cols=431 Identities=19% Similarity=0.362 Sum_probs=383.5
Q ss_pred EECCCC-hhHHHHHHHHHHHHHHHHHHhhhhhccccCCC---CCceehhhHhHHHHHHhhhe-eeeEEEEeCCeeEEEeC
Q 002763 56 IVSPYD-RRYRVWETYLVLLVIYTAWASPFEFGFLRKPQ---RPLSVIDNVVNGFFAVDIIL-TFFVAYLDKATYLLVDC 130 (883)
Q Consensus 56 ii~P~s-~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~---~~~~~i~~~~~~~F~~Di~l-~f~~ay~~~~~~~~v~~ 130 (883)
.|+|+. ++|..|-.++.+...|++|++|+..+|+.... ..|++.|++||+++++|+++ +-+.-|.-.| .+|.|
T Consensus 219 sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG--~~ik~ 296 (815)
T KOG0499|consen 219 SIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGG--DIIKD 296 (815)
T ss_pred ccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCc--eEEEe
Confidence 578988 89999999999999999999999999987643 45789999999999999986 2233333333 57888
Q ss_pred HHHHHHHHhhh-hhHHHHHhccchhhhhhhCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHH
Q 002763 131 PKQIAWKYASS-WLVFDVISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCCKLIFVTL 209 (883)
Q Consensus 131 ~~~i~~~Yl~~-~f~iDlis~iP~~~~~~~~~~~~~~~~~l~~lRl~Rl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~l 209 (883)
.+..+++|+++ .|-+|++|++|+++.+++++. ..++|+.|++++--++.++++|+.....-|. .|+++.+.+++
T Consensus 297 kndtrk~Yl~sr~FklDllsiLPldllY~~~G~----~p~wR~~R~lK~~sF~e~~~~Le~i~s~~y~-~RV~rT~~Yml 371 (815)
T KOG0499|consen 297 KNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGF----NPMWRANRMLKYTSFFEFNHHLESIMSKAYI-YRVIRTTGYLL 371 (815)
T ss_pred chHHHHHHHHhhhhhhhHHhhhhHHHHHHHhcc----chhhhhhhHHHHHHHHHHHHHHHHHhcchhh-hhhHHHHHHHH
Confidence 99999999976 599999999999999987654 2345777777777777778888776665554 89999999999
Q ss_pred HHHHHHHHHhhhheeeecCCCCCccccccCCcccccchhHHHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHH
Q 002763 210 FAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNL 289 (883)
Q Consensus 210 ~~~h~~aci~~~i~~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~ 289 (883)
+++|+.||+||+.+....-+.+-|+.... ...|+.++|||+-|++|+| |...|.|..|.+|..+--+.|+
T Consensus 372 yilHinacvYY~~SayqglG~~rWVydg~---------Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGV 441 (815)
T KOG0499|consen 372 YILHINACVYYWASAYQGLGTTRWVYDGE---------GNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGV 441 (815)
T ss_pred HHHhhhHHHHHHHHhhcccccceeEEcCC---------CCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999877777888987432 2359999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhccccchHHHHHhhchHHHHHHH
Q 002763 290 GLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSI 369 (883)
Q Consensus 290 ~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~~~~~~~~~~~~~~~~~~~l~~Lp~~lr~~i 369 (883)
++|+.+||.|-.++...+..++.|+..|+..-.||++.+||...|+|++.+|+|.|.++ ..+++.++|+.||..||.++
T Consensus 442 FvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQ-r~LDEs~ll~~LP~klq~dl 520 (815)
T KOG0499|consen 442 FVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQ-RMLDESDLLKTLPTKLQLDL 520 (815)
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhh-ccccHHHHHHhcchhheeee
Confidence 99999999999999999999999999999999999999999999999999999999874 57899999999999999999
Q ss_pred HHHHHHhHhhhccccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCe
Q 002763 370 SHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEI 449 (883)
Q Consensus 370 ~~~l~~~~l~~~~lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~ 449 (883)
+..++..++.|+.+|++|+.+.+..++..++...|.|||+|+++||.+.+||+|..|+|.+....+|. .++.+|++|++
T Consensus 521 Ai~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~-~Vl~tL~~GsV 599 (815)
T KOG0499|consen 521 AIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGT-KVLVTLKAGSV 599 (815)
T ss_pred eEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCC-EEEEEecccce
Confidence 99999999999999999999999999999999999999999999999999999999999999877764 47889999999
Q ss_pred eehhhhhc---CCCceeEEEEccceeEEeechhhHHHHHhhcccchHHHHHHHHhhhcc
Q 002763 450 CGEIGVLC---YRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKD 505 (883)
Q Consensus 450 fGe~~ll~---~~p~~~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~lk~ 505 (883)
|||+++|. +..|+++|+|.++|.++.|+++++.+++..||+-..++++....-++.
T Consensus 600 FGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkAr~llk~ 658 (815)
T KOG0499|consen 600 FGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKARVLLKQ 658 (815)
T ss_pred eeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHHHHHHHh
Confidence 99999883 567899999999999999999999999999999887777776655443
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=316.19 Aligned_cols=280 Identities=19% Similarity=0.244 Sum_probs=206.7
Q ss_pred CccccccChHHHHhhhcCCcc-ccc---C-------CCCCCCCccccccccccCCeEECCCChh-HHHHHHHHHHHHHHH
Q 002763 11 GFKVSVCGQEEIEQLSRDGSH-YSL---S-------TGVLPSLGARSNRRVKLRRFIVSPYDRR-YRVWETYLVLLVIYT 78 (883)
Q Consensus 11 ~~~~~~c~~~~~~~~~~~~~~-~~~---~-------~~~~~~~~~~~~~~~~~~~~ii~P~s~~-~~~w~~~~~~~~~~~ 78 (883)
...++.|||.+|.+++++... ... . .+.....+...+.|.++|.++++|+|+. .++..++.+++++.+
T Consensus 126 ~~~le~CC~~~~~~~~ee~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvS 205 (477)
T KOG3713|consen 126 EAHLESCCWMRYRQRREELLEELDRPDPDEEELREREGPEFDGGRCGRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVS 205 (477)
T ss_pred hhhhhHHhHHHHhhcHHHHhhhhcccCchhhhHHhhccccccCCChhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence 456889999999988733211 111 0 1111112334568889999999999876 456666555555555
Q ss_pred HHHhhhhh----------cc---------ccCCCCCceehhhHhHHHHHHhhheeeeEEEEeCCeeEEEeCHHHHHHHHh
Q 002763 79 AWASPFEF----------GF---------LRKPQRPLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYA 139 (883)
Q Consensus 79 ~~~~p~~~----------~f---------~~~~~~~~~~i~~~~~~~F~~Di~l~f~~ay~~~~~~~~v~~~~~i~~~Yl 139 (883)
++...+.. +. ...+...+.++|.+|.+||++|+++||..+ |+ +.+|+
T Consensus 206 iv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~WFT~E~llR~~~~------------P~--k~~F~ 271 (477)
T KOG3713|consen 206 IVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIAWFTFEYLLRFLVA------------PN--KLEFF 271 (477)
T ss_pred HHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcC------------ch--HHHHH
Confidence 55433221 11 112345588999999999999999999995 44 68888
Q ss_pred hhhh-HHHHHhccchhhhhhhCCCc------ch-hhhHHHHHHHHHHHHHHHHHHhhhhccchhHHHHH----HHHHHHH
Q 002763 140 SSWL-VFDVISTIPSELAQKISPKP------LQ-SYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVR----CCKLIFV 207 (883)
Q Consensus 140 ~~~f-~iDlis~iP~~~~~~~~~~~------~~-~~~~l~~lRl~Rl~r~~~~~~~l~~~~~~~~~~~~----~~~l~~~ 207 (883)
|+.. +||++|++|||+.+.+.... .. ...++|++|++|++|++|+-++..+.+.+...+.+ +..++++
T Consensus 272 k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllf 351 (477)
T KOG3713|consen 272 KSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLF 351 (477)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876 99999999999876543211 12 23677888888888888888887777666555444 4557777
Q ss_pred HHHHHHHHHHHhhhheeeecCCCCCccccccCCcccccchhHHHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHH
Q 002763 208 TLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLF 287 (883)
Q Consensus 208 ~l~~~h~~aci~~~i~~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~ 287 (883)
+.+.+.+||.+.|+++...+.+..+ +.+.++|||++|||||||||++|+|..||+++..+++.
T Consensus 352 L~~GI~iFStlvY~~Ek~~~~~~Ft-----------------SIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~ 414 (477)
T KOG3713|consen 352 LAVGIVIFSTLVYFAEKDEPDTKFT-----------------SIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILC 414 (477)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCCCc-----------------cccchhheeeEEEeeecccCccccccchHHHHHHHHHH
Confidence 7788889999999998765554444 44489999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 002763 288 NLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAAS 321 (883)
Q Consensus 288 g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 321 (883)
|+++.|+||..|.+.|++.+++.+..++..+.-.
T Consensus 415 GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~~~~ 448 (477)
T KOG3713|consen 415 GVLVLALPITIIVNNFSMYYSELKAREKAPKRRE 448 (477)
T ss_pred hHHHhhcchHhHhhhHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999999888776666554433
No 7
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-34 Score=261.70 Aligned_cols=181 Identities=30% Similarity=0.371 Sum_probs=170.9
Q ss_pred HHHhcCCCCchhHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCC
Q 002763 520 NMLARGRMDLPLSLCFAALRGDDLLLHQLLK-RGLDPNESDNNGRTALHIAASKGSENCVLLLLDY-EADPNSIDSDGNV 597 (883)
Q Consensus 520 ~~~~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~-~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~d~~g~t 597 (883)
.+..+.+.||+||||+||..|+.+++.+|++ .+..+|.+|..||||||+||+.|+.++|+.|+.. |+|+|..+..|+|
T Consensus 29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T 108 (226)
T KOG4412|consen 29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQT 108 (226)
T ss_pred hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcc
Confidence 4455677799999999999999999999995 6889999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHH
Q 002763 598 PLWEAMLGGHENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIV 675 (883)
Q Consensus 598 pL~~A~~~g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v 675 (883)
|||+|+..|..+++++|+++|+.++..| +.+++|.|+.-|.+.++++|+..|+.+|..|..|+||||.|...|+.+.+
T Consensus 109 ~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a 188 (226)
T KOG4412|consen 109 CLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVA 188 (226)
T ss_pred eehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHH
Confidence 9999999999999999999999999888 56888999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHH
Q 002763 676 RFLLDQKADVDKPDVHGWTPRDLADQ 701 (883)
Q Consensus 676 ~~Ll~~ga~~~~~d~~g~Tpl~~A~~ 701 (883)
.+|+++||+++..|+.| ||+-.|+.
T Consensus 189 ~lLV~~gAd~~~edke~-t~~~~a~~ 213 (226)
T KOG4412|consen 189 VLLVRAGADTDREDKEG-TALRIACN 213 (226)
T ss_pred HHHHHhccceeeccccC-chHHHHHH
Confidence 99999999999999988 99887764
No 8
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.5e-32 Score=247.73 Aligned_cols=191 Identities=25% Similarity=0.370 Sum_probs=177.4
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCC-CCCCCCC-CCCcHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCCHHHHHHH
Q 002763 528 DLPLSLCFAALRGDDLLLHQLLKRGL-DPNESDN-NGRTALHIAASKGSENCVLLLL-DYEADPNSIDSDGNVPLWEAML 604 (883)
Q Consensus 528 ~~~t~L~~Aa~~g~~~~v~~Ll~~g~-d~n~~d~-~g~TpLh~Aa~~g~~~~v~~Ll-~~ga~~~~~d~~g~tpL~~A~~ 604 (883)
++.++.+.++...-..-++.+++... .+|.+|. +|+||||+||+.|+.+++.+|+ +.+..+|.+|..|+||||.||.
T Consensus 2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s 81 (226)
T KOG4412|consen 2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAAS 81 (226)
T ss_pred CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhh
Confidence 45677888888888899999999876 6787776 9999999999999999999999 6689999999999999999999
Q ss_pred cCcHHHHHHHHHc-CCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhC
Q 002763 605 GGHENVIKLLMEN-HADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQ 681 (883)
Q Consensus 605 ~g~~~iv~~Ll~~-g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ 681 (883)
.|+.++|+.|+.+ |+++|..+ +.+++|+|+..|..++.++|+++|+.++.+|..|.||||-|+..|+++++++|+..
T Consensus 82 ~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~ 161 (226)
T KOG4412|consen 82 NGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ 161 (226)
T ss_pred cCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhc
Confidence 9999999999998 99999765 44677999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhccccc
Q 002763 682 KADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 682 ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~ 718 (883)
||.+|.+|+.|+||||.|...|+.++..+|..++++.
T Consensus 162 ~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~ 198 (226)
T KOG4412|consen 162 GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADT 198 (226)
T ss_pred CCCCCcccccCccHHHHHHhccCchHHHHHHHhccce
Confidence 9999999999999999998899999999999999763
No 9
>PHA02791 ankyrin-like protein; Provisional
Probab=99.97 E-value=6.1e-31 Score=277.23 Aligned_cols=190 Identities=18% Similarity=0.168 Sum_probs=176.1
Q ss_pred CCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 002763 525 GRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAML 604 (883)
Q Consensus 525 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~ 604 (883)
.+.+|.||||+|+..|+.++++.|++.|++++..| |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~ 103 (284)
T PHA02791 26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVD 103 (284)
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 45678999999999999999999999999998864 7899999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCCCCCCCCc---chhHHHHHHhCCHHHHHHHHHcCCCccccC-CCCChHHHHHHHcCCHHHHHHHHh
Q 002763 605 GGHENVIKLLMENHADINSGDV---GHFACTAAEQNNLELLKEIVCYGGDVTRQR-NNGSTALHVAVCEDNVEIVRFLLD 680 (883)
Q Consensus 605 ~g~~~iv~~Ll~~g~~~~~~~~---~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~ 680 (883)
.|+.+++++|+++|++++..+. .++++.|+..|+.+++++|++++.+. .| ..|.||||+|+..|+.+++++|++
T Consensus 104 ~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~ 181 (284)
T PHA02791 104 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLD 181 (284)
T ss_pred cCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999987653 36889999999999999999987643 23 358999999999999999999999
Q ss_pred CCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHhhccccc
Q 002763 681 QKADVDKPDVHGWTP-RDLADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 681 ~ga~~~~~d~~g~Tp-l~~A~~~~~~~i~~~L~~~~~~~ 718 (883)
+||+++.+|..|.|| ||+|+..|+.+++++|+++|+..
T Consensus 182 ~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i 220 (284)
T PHA02791 182 YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI 220 (284)
T ss_pred CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 999999999999987 99999999999999999999874
No 10
>PHA02791 ankyrin-like protein; Provisional
Probab=99.96 E-value=4.1e-29 Score=263.36 Aligned_cols=185 Identities=14% Similarity=0.165 Sum_probs=171.4
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcC
Q 002763 528 DLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGN-VPLWEAMLGG 606 (883)
Q Consensus 528 ~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~-tpL~~A~~~g 606 (883)
++.||||.|+..|+.++++.|++.|+++|.+|..|+||||+||..|+.+++++|+++|++++.++..|. ||||+|+..|
T Consensus 60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g 139 (284)
T PHA02791 60 ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN 139 (284)
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcC
Confidence 468999999999999999999999999999999999999999999999999999999999999999884 8999999999
Q ss_pred cHHHHHHHHHcCCCCC-CCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChH-HHHHHHcCCHHHHHHHHhCCCC
Q 002763 607 HENVIKLLMENHADIN-SGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTA-LHVAVCEDNVEIVRFLLDQKAD 684 (883)
Q Consensus 607 ~~~iv~~Ll~~g~~~~-~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~-Lh~A~~~g~~~~v~~Ll~~ga~ 684 (883)
+.+++++|++++++.. ...+.+++|.|+..|+.++++.|+++|+++|.+|..|.|| ||+|+..|+.+++++|+++||+
T Consensus 140 ~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~ 219 (284)
T PHA02791 140 DVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN 219 (284)
T ss_pred CHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC
Confidence 9999999999876542 2346789999999999999999999999999999999987 9999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccccc
Q 002763 685 VDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETKA 719 (883)
Q Consensus 685 ~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~~ 719 (883)
++.+|..| ||| ++.|++++|+++-++..
T Consensus 220 in~~~~~~-~~l------~~~e~~~~ll~~~~~~~ 247 (284)
T PHA02791 220 IYSVNLEN-VLL------DDAEIAKMIIEKHVEYK 247 (284)
T ss_pred CccCcccC-ccC------CCHHHHHHHHHhhhhhc
Confidence 99999855 666 78899999998877654
No 11
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.96 E-value=8.6e-29 Score=287.47 Aligned_cols=195 Identities=29% Similarity=0.358 Sum_probs=186.1
Q ss_pred cCCCCchhHHHHHH--hcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCCHH
Q 002763 524 RGRMDLPLSLCFAA--LRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKG--SENCVLLLLDYEADPNSIDSDGNVPL 599 (883)
Q Consensus 524 ~~~~~~~t~L~~Aa--~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g--~~~~v~~Ll~~ga~~~~~d~~g~tpL 599 (883)
..+..|.||||.|+ ..|+.++++.|+++|++++..|..|.||||+|+..| +.+++++|+++|++++.+|..|.|||
T Consensus 101 ~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL 180 (480)
T PHA03100 101 APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPL 180 (480)
T ss_pred CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHH
Confidence 34556899999999 999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHHcCCCCCCCCc--------chhHHHHHHhCC--HHHHHHHHHcCCCccccCCCCChHHHHHHHc
Q 002763 600 WEAMLGGHENVIKLLMENHADINSGDV--------GHFACTAAEQNN--LELLKEIVCYGGDVTRQRNNGSTALHVAVCE 669 (883)
Q Consensus 600 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~--------~~~l~~a~~~~~--~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~ 669 (883)
|+|+..|+.+++++|+++|++++..+. .++++.|+..++ .++++.|+++|+++|.+|..|.||||+|+..
T Consensus 181 ~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~ 260 (480)
T PHA03100 181 HIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYN 260 (480)
T ss_pred HHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 999999999999999999999987653 567899999999 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhccccc
Q 002763 670 DNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 670 g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~ 718 (883)
|+.+++++|+++|||++.+|..|.||+|+|+..++.+++++|+++++..
T Consensus 261 ~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i 309 (480)
T PHA03100 261 NNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI 309 (480)
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999999999999999864
No 12
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.96 E-value=2e-28 Score=283.04 Aligned_cols=206 Identities=22% Similarity=0.245 Sum_probs=181.6
Q ss_pred CCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH-----------------------------
Q 002763 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSEN----------------------------- 576 (883)
Q Consensus 526 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~----------------------------- 576 (883)
...+.||||.|+..|+.++++.|+++|+|+|.+|.+|+||||+||..|+.+
T Consensus 34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~ 113 (477)
T PHA02878 34 SLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRN 113 (477)
T ss_pred cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCC
Confidence 345689999999999999999999999999999999999999999876432
Q ss_pred -----------------------------------HHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCcHHHHHHHHHcCCC
Q 002763 577 -----------------------------------CVLLLLDYEADPNSIDSD-GNVPLWEAMLGGHENVIKLLMENHAD 620 (883)
Q Consensus 577 -----------------------------------~v~~Ll~~ga~~~~~d~~-g~tpL~~A~~~g~~~iv~~Ll~~g~~ 620 (883)
++++|+++|+++|.+|.. |.||||+|+..|+.+++++|++.|++
T Consensus 114 ~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad 193 (477)
T PHA02878 114 VEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN 193 (477)
T ss_pred HHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC
Confidence 677788889999999988 99999999999999999999999999
Q ss_pred CCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHc-CCHHHHHHHHhCCCCCCCCCC-CCCCHH
Q 002763 621 INSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCE-DNVEIVRFLLDQKADVDKPDV-HGWTPR 696 (883)
Q Consensus 621 ~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~-g~~~~v~~Ll~~ga~~~~~d~-~g~Tpl 696 (883)
++..+ +.+++|.|+..++.++++.|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++.++. .|.|||
T Consensus 194 ~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpL 273 (477)
T PHA02878 194 VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTAL 273 (477)
T ss_pred CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHH
Confidence 98765 55788999999999999999999999999999999999999975 789999999999999999886 799999
Q ss_pred HHHHHcCCHHHHHHHhhcccccccccccccCCCcccccccc
Q 002763 697 DLADQQGHEEIKCIFQSCKETKAQSIISVAERPQQEVHYLG 737 (883)
Q Consensus 697 ~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (883)
|+| .++.+++++|+++|++. ...+..+.++++.+.
T Consensus 274 h~A--~~~~~~v~~Ll~~gadi----n~~d~~g~TpL~~A~ 308 (477)
T PHA02878 274 HSS--IKSERKLKLLLEYGADI----NSLNSYKLTPLSSAV 308 (477)
T ss_pred HHH--ccCHHHHHHHHHCCCCC----CCcCCCCCCHHHHHH
Confidence 999 57889999999998874 344555666666654
No 13
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.96 E-value=2.8e-29 Score=273.63 Aligned_cols=186 Identities=28% Similarity=0.284 Sum_probs=142.0
Q ss_pred HHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCcHH
Q 002763 532 SLCFAALRGDDLLLHQLLKR-GLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSID-SDGNVPLWEAMLGGHEN 609 (883)
Q Consensus 532 ~L~~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpL~~A~~~g~~~ 609 (883)
-+..|+++|+++.++.|++. |.++|..|.+|.|+||+||.+++.+++++|+++|||+|..+ ..|.||||+|+++|+..
T Consensus 47 ~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~ 126 (600)
T KOG0509|consen 47 DIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHIS 126 (600)
T ss_pred hhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHH
Confidence 45667777888888888777 77777777788888888888888888888888888887776 55677888888888888
Q ss_pred HHHHHHHcCCCCCCCCcc--hhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 002763 610 VIKLLMENHADINSGDVG--HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDK 687 (883)
Q Consensus 610 iv~~Ll~~g~~~~~~~~~--~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~ 687 (883)
+|.+|+++||+++..|.. +++|+|+..++.-++-+|+.+|+|+|.+|.+|+||||+|+.+|+...++.||..|++++.
T Consensus 127 vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~ 206 (600)
T KOG0509|consen 127 VVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLL 206 (600)
T ss_pred HHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccc
Confidence 888888888877776643 556778888888888888877777888888888888888887777777777777777777
Q ss_pred CC-CCCCCHHHHHHHcCCHHHHHHHhhcccc
Q 002763 688 PD-VHGWTPRDLADQQGHEEIKCIFQSCKET 717 (883)
Q Consensus 688 ~d-~~g~Tpl~~A~~~~~~~i~~~L~~~~~~ 717 (883)
.| .+|+||||+|+..|+..++.++++.++.
T Consensus 207 ~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~ 237 (600)
T KOG0509|consen 207 TDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD 237 (600)
T ss_pred cccccCCchHHHHHhcCCcceEehhhhcCCc
Confidence 77 7778888888888877777755555444
No 14
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.96 E-value=2.3e-28 Score=277.97 Aligned_cols=193 Identities=21% Similarity=0.192 Sum_probs=158.7
Q ss_pred CCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHH
Q 002763 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPN-SIDSDGNVPLWEAML 604 (883)
Q Consensus 526 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~ 604 (883)
..+|.||||.|+..|+.++++.|++.|++++..+.+|.||||.|+..|+.++++.|+++|++++ ..+..|.||||+|+.
T Consensus 32 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 111 (413)
T PHA02875 32 IYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATI 111 (413)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHH
Confidence 3367888888888888888888888888888888888888888888888888888888887654 446678888888888
Q ss_pred cCcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCC
Q 002763 605 GGHENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQK 682 (883)
Q Consensus 605 ~g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g 682 (883)
.|+.+++++|+++|++++..+ +.+++|.|+..|+.++++.|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 112 ~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g 191 (413)
T PHA02875 112 LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191 (413)
T ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 888888888888888877654 457788888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCCCCCC-CHHHHHHHcCCHHHHHHHhhccccc
Q 002763 683 ADVDKPDVHGW-TPRDLADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 683 a~~~~~d~~g~-Tpl~~A~~~~~~~i~~~L~~~~~~~ 718 (883)
++++..+..|. ||+|+|+..|+.+++++|+++|++.
T Consensus 192 a~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~ 228 (413)
T PHA02875 192 ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC 228 (413)
T ss_pred CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence 88888887764 7788888888888888888888774
No 15
>PHA02946 ankyin-like protein; Provisional
Probab=99.96 E-value=5.4e-28 Score=273.80 Aligned_cols=194 Identities=23% Similarity=0.284 Sum_probs=159.1
Q ss_pred HhcCCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCC-CCCCCCCH
Q 002763 522 LARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKG--SENCVLLLLDYEADPNS-IDSDGNVP 598 (883)
Q Consensus 522 ~~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g--~~~~v~~Ll~~ga~~~~-~d~~g~tp 598 (883)
.+..+.+|.||||+|+..|+.++++.|+++|+|+|.+|.+|+||||+|+..+ ..+++++|+++|+++|. .|..|.||
T Consensus 65 vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tp 144 (446)
T PHA02946 65 PNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGP 144 (446)
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcH
Confidence 3444567888999999999999999999999999988889999999888765 47888889999998885 58888899
Q ss_pred HHHHHHcCcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhC--CHHHHHHHHHcCCCccccCCCCChHHHHHHHcC--CH
Q 002763 599 LWEAMLGGHENVIKLLMENHADINSGD--VGHFACTAAEQN--NLELLKEIVCYGGDVTRQRNNGSTALHVAVCED--NV 672 (883)
Q Consensus 599 L~~A~~~g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~--~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g--~~ 672 (883)
|| |+..++.+++++|++.|++++..| +.+++|.|+..+ +.+++++|+++|++++.+|.+|+||||+|+..| +.
T Consensus 145 L~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~ 223 (446)
T PHA02946 145 LL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNV 223 (446)
T ss_pred HH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcH
Confidence 87 666788888999998888887665 456777776654 468888899999999988889999999998876 78
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHhhcccc
Q 002763 673 EIVRFLLDQKADVDKPDVHGWTPRDLADQQGH-EEIKCIFQSCKET 717 (883)
Q Consensus 673 ~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~-~~i~~~L~~~~~~ 717 (883)
+++++|++ |++++.+|..|+||||+|+..++ .+++++|+++++.
T Consensus 224 ~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~ 268 (446)
T PHA02946 224 DIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNV 268 (446)
T ss_pred HHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCC
Confidence 88888885 88999999999999999888887 4788888887754
No 16
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.96 E-value=1.2e-28 Score=268.58 Aligned_cols=179 Identities=32% Similarity=0.380 Sum_probs=170.3
Q ss_pred cCCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 002763 524 RGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESD-NNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEA 602 (883)
Q Consensus 524 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A 602 (883)
.++.+|-++||+||.+++.+++++|+++|+|+|..+ .-|.||||+||.+|+..+|.+|+++||||+.+|.+|.||||.|
T Consensus 73 ~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla 152 (600)
T KOG0509|consen 73 NPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLA 152 (600)
T ss_pred CCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHH
Confidence 456689999999999999999999999999999988 6789999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccC-CCCChHHHHHHHcCCHHHHHHHH
Q 002763 603 MLGGHENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQR-NNGSTALHVAVCEDNVEIVRFLL 679 (883)
Q Consensus 603 ~~~g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll 679 (883)
+..||.-.|-+|+.+|++++..| +.+++++|+.+++...+..|++.|++++..| .+|+||||+|+..||..++++|+
T Consensus 153 ~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~ 232 (600)
T KOG0509|consen 153 AQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLL 232 (600)
T ss_pred HHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhh
Confidence 99999999999999999999877 5578899999999998999999999999988 89999999999999999999888
Q ss_pred hCCCCCCCCCCCCCCHHHHHHHc
Q 002763 680 DQKADVDKPDVHGWTPRDLADQQ 702 (883)
Q Consensus 680 ~~ga~~~~~d~~g~Tpl~~A~~~ 702 (883)
+.|++.+..|.+|.||+++|.+.
T Consensus 233 ~g~~~~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 233 EGGADLDKTNTNGKTPFDLAQER 255 (600)
T ss_pred hcCCcccccccCCCCHHHHHHHh
Confidence 89999999999999999999877
No 17
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.96 E-value=6.5e-28 Score=275.47 Aligned_cols=178 Identities=25% Similarity=0.279 Sum_probs=137.2
Q ss_pred CCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC--------------------
Q 002763 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEA-------------------- 586 (883)
Q Consensus 527 ~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga-------------------- 586 (883)
.++.||||.|+..|+.+++++|++.|+++|..+..|.||||.|+..|+.+++++|+++|+
T Consensus 33 ~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~ 112 (434)
T PHA02874 33 DETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD 112 (434)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence 356788888888888888888888888888888888888888888888887777776654
Q ss_pred ---CCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCCh
Q 002763 587 ---DPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGST 661 (883)
Q Consensus 587 ---~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T 661 (883)
+++.+|..|.||||+|+..|+.+++++|+++|++++..+ +.+++|.|+..++.++++.|+++|++++..|..|.|
T Consensus 113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~t 192 (434)
T PHA02874 113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGES 192 (434)
T ss_pred CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence 456677778888888888888888888888888777654 456778888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 002763 662 ALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGH 704 (883)
Q Consensus 662 ~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~ 704 (883)
|||+|+..|+.+++++|+++|++++.++..|.||||.|+..+.
T Consensus 193 pL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~ 235 (434)
T PHA02874 193 PLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR 235 (434)
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh
Confidence 8888888888888888888877776666666666666665544
No 18
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.96 E-value=6.5e-28 Score=274.21 Aligned_cols=189 Identities=23% Similarity=0.282 Sum_probs=181.7
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHH
Q 002763 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHEN 609 (883)
Q Consensus 530 ~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~ 609 (883)
.++||.|+..|+.++++.|+++|+++|..+.+|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+.+
T Consensus 3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCC---CCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCC
Q 002763 610 VIKLLMENHADINS---GDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVD 686 (883)
Q Consensus 610 iv~~Ll~~g~~~~~---~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~ 686 (883)
+++.|++.|+..+. .++.+++|.|+..|+.++++.|+++|++++.++.+|.||||+|+..|+.+++++|+++|++++
T Consensus 83 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~ 162 (413)
T PHA02875 83 AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD 162 (413)
T ss_pred HHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence 99999999986643 456789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHhhccccc
Q 002763 687 KPDVHGWTPRDLADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 687 ~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~ 718 (883)
.+|..|+||||+|+..|+.+++++|+++|+..
T Consensus 163 ~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~ 194 (413)
T PHA02875 163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194 (413)
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999874
No 19
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.1e-30 Score=258.40 Aligned_cols=191 Identities=18% Similarity=0.292 Sum_probs=154.8
Q ss_pred CCceehhhHhHHHHHHhhheeeeEEEEeCCeeEEEeCHHHHHHHHhhhhh-HHHHHhccchhhhhhhC-------C---C
Q 002763 94 RPLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYASSWL-VFDVISTIPSELAQKIS-------P---K 162 (883)
Q Consensus 94 ~~~~~i~~~~~~~F~~Di~l~f~~ay~~~~~~~~v~~~~~i~~~Yl~~~f-~iDlis~iP~~~~~~~~-------~---~ 162 (883)
.+++++|..|.+||.+|+++||+.+ |.+ .-|.++-+ +||++|++|+++.+... + .
T Consensus 253 dPFFiVEt~CIiWFtfEllvRf~aC------------PsK--~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gq 318 (507)
T KOG1545|consen 253 DPFFIVETLCIIWFTFELLVRFFAC------------PSK--ATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQ 318 (507)
T ss_pred CchHhHHHHHHHHHhHHHHHHHhcC------------ccH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccch
Confidence 5689999999999999999999994 543 34555544 99999999998776541 0 1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhhccch----hHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCcccccc
Q 002763 163 PLQSYGLFNMLRLWRLRRVSALFSRLEKDRNY----NYFWVRCCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGASL 238 (883)
Q Consensus 163 ~~~~~~~l~~lRl~Rl~r~~~~~~~l~~~~~~----~~~~~~~~~l~~~~l~~~h~~aci~~~i~~~~~~~~~~w~~~~~ 238 (883)
...++.++|++||.|++|++|+.++..+...+ ...+..+..+++++++.+.+|+...|+.+...+++..+.|+
T Consensus 319 qaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIP--- 395 (507)
T KOG1545|consen 319 QAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIP--- 395 (507)
T ss_pred hhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCc---
Confidence 12357788999999999999988877665544 34456677888888889999999999888665555554444
Q ss_pred CCcccccchhHHHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 002763 239 GQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRD 315 (883)
Q Consensus 239 ~~~~~~~~~~~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~ 315 (883)
+||||+++|||||||||++|.|..|++++.+|.+.|++.+|+++..|.+.|...|.+..+..+
T Consensus 396 --------------daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEte~ee 458 (507)
T KOG1545|consen 396 --------------DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEE 458 (507)
T ss_pred --------------ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccceeeccccchh
Confidence 899999999999999999999999999999999999999999999999999988876665544
No 20
>PHA02946 ankyin-like protein; Provisional
Probab=99.95 E-value=1.9e-27 Score=269.39 Aligned_cols=206 Identities=23% Similarity=0.295 Sum_probs=180.0
Q ss_pred hhHHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCc
Q 002763 530 PLSLCFAAL--RGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGH 607 (883)
Q Consensus 530 ~t~L~~Aa~--~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~ 607 (883)
.++||.++. .++.++++.|+++|+|+|.+|.+|.||||+||..|+.++|++|+++|+++|.+|..|.||||+|+..++
T Consensus 38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~ 117 (446)
T PHA02946 38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117 (446)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC
Confidence 578887763 457899999999999999999999999999999999999999999999999999999999999998764
Q ss_pred --HHHHHHHHHcCCCCCC---CCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCC--HHHHHHHHh
Q 002763 608 --ENVIKLLMENHADINS---GDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDN--VEIVRFLLD 680 (883)
Q Consensus 608 --~~iv~~Ll~~g~~~~~---~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~--~~~v~~Ll~ 680 (883)
.+++++|+++|++++. .++.++++ |+..++.++++.|+++|++++.+|..|.||||.|+..++ .+++++|++
T Consensus 118 ~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~ 196 (446)
T PHA02946 118 EVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMK 196 (446)
T ss_pred chHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 7899999999999984 23445664 777899999999999999999999999999999987654 689999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHhhcccccccccccccCCCcccccccccccC
Q 002763 681 QKADVDKPDVHGWTPRDLADQQG--HEEIKCIFQSCKETKAQSIISVAERPQQEVHYLGRFTS 741 (883)
Q Consensus 681 ~ga~~~~~d~~g~Tpl~~A~~~~--~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (883)
+|++++.+|.+|+||||+|+..+ +.+++++|+. ++. ....+..+.++++++....+
T Consensus 197 ~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad----in~~d~~G~TpLh~A~~~~~ 254 (446)
T PHA02946 197 LGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD----VNKQNKFGDSPLTLLIKTLS 254 (446)
T ss_pred cCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC----CCCCCCCCCCHHHHHHHhCC
Confidence 99999999999999999999986 7899999985 433 45556677788887665543
No 21
>PHA02798 ankyrin-like protein; Provisional
Probab=99.95 E-value=7.6e-28 Score=278.63 Aligned_cols=203 Identities=23% Similarity=0.222 Sum_probs=172.5
Q ss_pred hHHHHHhcCCCCchhHHHHHHhc-----CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHhCCCCC
Q 002763 517 ETENMLARGRMDLPLSLCFAALR-----GDDLLLHQLLKRGLDPNESDNNGRTALHIAASKG---SENCVLLLLDYEADP 588 (883)
Q Consensus 517 ~~~~~~~~~~~~~~t~L~~Aa~~-----g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g---~~~~v~~Ll~~ga~~ 588 (883)
+.+..++..+.+|.||||.|+.+ +..++++.|+++|+|+|.+|.+|+||||+|+.+| +.+++++|+++|+|+
T Consensus 59 ~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv 138 (489)
T PHA02798 59 NLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT 138 (489)
T ss_pred HCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc
Confidence 33333444456788999998764 6789999999999999999999999999999875 789999999999999
Q ss_pred CCCCCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCCCC---cchhHHHHHHh----CCHHHHHHHHHcCC--------
Q 002763 589 NSIDSDGNVPLWEAMLGGH---ENVIKLLMENHADINSGD---VGHFACTAAEQ----NNLELLKEIVCYGG-------- 650 (883)
Q Consensus 589 ~~~d~~g~tpL~~A~~~g~---~~iv~~Ll~~g~~~~~~~---~~~~l~~a~~~----~~~~~~~~Ll~~g~-------- 650 (883)
+.+|..|.||||+|+..++ .+++++|+++|++++..+ +.+++|.++.. ++.+++++|+++|+
T Consensus 139 n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~ 218 (489)
T PHA02798 139 TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKS 218 (489)
T ss_pred cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCcc
Confidence 9999999999999999887 899999999999988653 34566666543 46788888877765
Q ss_pred -------------------------------CccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 002763 651 -------------------------------DVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLA 699 (883)
Q Consensus 651 -------------------------------~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A 699 (883)
|+|.+|..|.||||+|+..|+.+++++|+++|||++.+|..|+||||+|
T Consensus 219 ~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A 298 (489)
T PHA02798 219 HKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA 298 (489)
T ss_pred ccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHH
Confidence 4455677899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHhhcccccc
Q 002763 700 DQQGHEEIKCIFQSCKETKA 719 (883)
Q Consensus 700 ~~~~~~~i~~~L~~~~~~~~ 719 (883)
+..++.++++.|++++++..
T Consensus 299 ~~~~~~~iv~~lL~~~~~~~ 318 (489)
T PHA02798 299 FENESKFIFNSILNKKPNKN 318 (489)
T ss_pred HHcCcHHHHHHHHccCCCHH
Confidence 99999999999999887653
No 22
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.95 E-value=2.2e-27 Score=275.64 Aligned_cols=210 Identities=26% Similarity=0.305 Sum_probs=192.1
Q ss_pred CCCchhHHHH-----HHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHhCCCCCCCCCCCCCCH
Q 002763 526 RMDLPLSLCF-----AALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAA--SKGSENCVLLLLDYEADPNSIDSDGNVP 598 (883)
Q Consensus 526 ~~~~~t~L~~-----Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa--~~g~~~~v~~Ll~~ga~~~~~d~~g~tp 598 (883)
+.++.||||. |+..|+.++++.|++.|++++..|..|.||||+|+ ..|+.+++++|+++|++++..|..|.||
T Consensus 65 ~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~ 144 (480)
T PHA03100 65 TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENL 144 (480)
T ss_pred cccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcH
Confidence 4467899999 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHcC--cHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCC------ChHHHHHHH
Q 002763 599 LWEAMLGG--HENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNG------STALHVAVC 668 (883)
Q Consensus 599 L~~A~~~g--~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g------~T~Lh~A~~ 668 (883)
||.|+..| +.+++++|+++|++++..+ +.+++|.|+..|+.++++.|+++|++++..+..| .||||.|+.
T Consensus 145 L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~ 224 (480)
T PHA03100 145 LHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAAC 224 (480)
T ss_pred HHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHH
Confidence 99999999 9999999999999988655 5678999999999999999999999999999988 899999999
Q ss_pred cCC--HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccccccccccccCCCcccccccccc
Q 002763 669 EDN--VEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETKAQSIISVAERPQQEVHYLGRF 739 (883)
Q Consensus 669 ~g~--~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (883)
.|+ .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++. ...+..+.++++++...
T Consensus 225 ~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~----n~~d~~g~tpl~~A~~~ 293 (480)
T PHA03100 225 YNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANP----NLVNKYGDTPLHIAILN 293 (480)
T ss_pred hCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----CccCCCCCcHHHHHHHh
Confidence 999 99999999999999999999999999999999999999999999853 34445556666665443
No 23
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.95 E-value=7.2e-27 Score=271.68 Aligned_cols=174 Identities=17% Similarity=0.179 Sum_probs=110.1
Q ss_pred CCCchhHHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC--HHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 002763 526 RMDLPLSLCFAAL--RGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGS--ENCVLLLLDYEADPNSIDSDGNVPLWE 601 (883)
Q Consensus 526 ~~~~~t~L~~Aa~--~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~--~~~v~~Ll~~ga~~~~~d~~g~tpL~~ 601 (883)
+..|.||||.|+. .++.+++++|+++|+|+|.+|.+|.||||+|+..|+ .++|++|+++|||+|.+|..|.||||.
T Consensus 174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~ 253 (764)
T PHA02716 174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMT 253 (764)
T ss_pred CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 4568999999864 468999999999999999999999999999999995 599999999999999999999999997
Q ss_pred HHH---cCcHHHHHHHHHcCCCCCCCCcchhH---HHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHH--cCCHH
Q 002763 602 AML---GGHENVIKLLMENHADINSGDVGHFA---CTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVC--EDNVE 673 (883)
Q Consensus 602 A~~---~g~~~iv~~Ll~~g~~~~~~~~~~~l---~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~--~g~~~ 673 (883)
|+. .++.+++++|++.+......+....+ +.|+..|+.++++.|+++|++++.+|.+|+||||+|+. .++.+
T Consensus 254 Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~e 333 (764)
T PHA02716 254 YIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTD 333 (764)
T ss_pred HHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCch
Confidence 642 33444444444432211111111111 22344444444444444444444444444444444332 22344
Q ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHH
Q 002763 674 IVRFLLDQKADVDKPDVHGWTPRDLA 699 (883)
Q Consensus 674 ~v~~Ll~~ga~~~~~d~~g~Tpl~~A 699 (883)
++++|+++||+++.+|..|+||||+|
T Consensus 334 IVklLLe~GADIN~kD~~G~TPLH~A 359 (764)
T PHA02716 334 IIKLLHEYGNDLNEPDNIGNTVLHTY 359 (764)
T ss_pred HHHHHHHcCCCCccCCCCCCCHHHHH
Confidence 44444444444444444444444444
No 24
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.95 E-value=9e-27 Score=269.20 Aligned_cols=170 Identities=29% Similarity=0.328 Sum_probs=156.5
Q ss_pred HHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Q 002763 544 LLHQLLKRGLDPNESDNN-GRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADIN 622 (883)
Q Consensus 544 ~v~~Ll~~g~d~n~~d~~-g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~ 622 (883)
+++.|+++|+|+|..|.+ |.||||+||..|+.+++++|+++|+++|.+|..|.||||.|+..|+.+++++|++.|++++
T Consensus 149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in 228 (477)
T PHA02878 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD 228 (477)
T ss_pred HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 677788889999999998 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--cchhHHHHHHh-CCHHHHHHHHHcCCCccccCC-CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 002763 623 SGD--VGHFACTAAEQ-NNLELLKEIVCYGGDVTRQRN-NGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDL 698 (883)
Q Consensus 623 ~~~--~~~~l~~a~~~-~~~~~~~~Ll~~g~~~~~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~ 698 (883)
..+ +.+++|.|+.. ++.++++.|+++|+++|.++. .|.||||+| .++.+++++|+++|||++..|..|+||||+
T Consensus 229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~ 306 (477)
T PHA02878 229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSS 306 (477)
T ss_pred CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 766 55788999976 789999999999999999986 899999999 578999999999999999999999999999
Q ss_pred HHHcC-CHHHHHHHhhcc
Q 002763 699 ADQQG-HEEIKCIFQSCK 715 (883)
Q Consensus 699 A~~~~-~~~i~~~L~~~~ 715 (883)
|+..+ ..+++++|+...
T Consensus 307 A~~~~~~~~~~~~li~~~ 324 (477)
T PHA02878 307 AVKQYLCINIGRILISNI 324 (477)
T ss_pred HHHHcCccchHHHHHHHH
Confidence 99754 567788887664
No 25
>PHA03095 ankyrin-like protein; Provisional
Probab=99.95 E-value=7.9e-27 Score=270.47 Aligned_cols=211 Identities=20% Similarity=0.202 Sum_probs=167.9
Q ss_pred CCCCchhHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 002763 525 GRMDLPLSLCFAALRG-DDLLLHQLLKRGLDPNESDNNGRTALHIAA--SKGSENCVLLLLDYEADPNSIDSDGNVPLWE 601 (883)
Q Consensus 525 ~~~~~~t~L~~Aa~~g-~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa--~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~ 601 (883)
.+..|.||||+|+..| +.++++.|+++|+++|.+|..|.||||+|+ ..++.+++++|+++|++++.+|..|.||||.
T Consensus 79 ~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~ 158 (471)
T PHA03095 79 PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV 158 (471)
T ss_pred CCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence 3446788888888888 488888888888888888888888888888 4567888888888888888888888888888
Q ss_pred HHHcC--cHHHHHHHHHcCCCCCCCC--cchhHHHHHHh--CCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCH--H
Q 002763 602 AMLGG--HENVIKLLMENHADINSGD--VGHFACTAAEQ--NNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNV--E 673 (883)
Q Consensus 602 A~~~g--~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~--~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~--~ 673 (883)
|+..+ +.+++++|+++|++++..+ +.+++|.++.. ++.++++.|+++|++++.+|..|+||||+|+..|+. .
T Consensus 159 a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~ 238 (471)
T PHA03095 159 LLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRS 238 (471)
T ss_pred HHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHH
Confidence 88765 5788888888888877654 44667776654 677888888888888888888888888888888864 5
Q ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccccccccccccCCCcccccccccc
Q 002763 674 IVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETKAQSIISVAERPQQEVHYLGRF 739 (883)
Q Consensus 674 ~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (883)
+++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++. ...+..+.++++.+...
T Consensus 239 ~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~----n~~~~~g~tpl~~A~~~ 300 (471)
T PHA03095 239 LVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADI----NAVSSDGNTPLSLMVRN 300 (471)
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----cccCCCCCCHHHHHHHh
Confidence 788888888888888888888888888888888888888888763 33344555666555433
No 26
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-27 Score=248.20 Aligned_cols=192 Identities=28% Similarity=0.383 Sum_probs=175.7
Q ss_pred CCCchhHHHHHHhcCCHHHHHHHHH-cCCCCCCC--------CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Q 002763 526 RMDLPLSLCFAALRGDDLLLHQLLK-RGLDPNES--------DNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGN 596 (883)
Q Consensus 526 ~~~~~t~L~~Aa~~g~~~~v~~Ll~-~g~d~n~~--------d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~ 596 (883)
..+|.|||..||++|+.++|++|++ .++++... .-.|.+||..|+..||.++|++|+++|+++|.......
T Consensus 39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNS 118 (615)
T KOG0508|consen 39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNS 118 (615)
T ss_pred ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCC
Confidence 4578899999999999999999999 46777543 34688999999999999999999999999999888888
Q ss_pred CHHHHHHHcCcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHH
Q 002763 597 VPLWEAMLGGHENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEI 674 (883)
Q Consensus 597 tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~ 674 (883)
|||..||.-||.++|++|+++|+|++..+ +.+.++.||..|+.+++++|++.|+|+|.++..|+||||.|+..|++|+
T Consensus 119 tPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdi 198 (615)
T KOG0508|consen 119 TPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDI 198 (615)
T ss_pred ccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHH
Confidence 99999999999999999999999999877 4456688999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhccccc
Q 002763 675 VRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 675 v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~ 718 (883)
+++|+.+|+.++. |..|.|||-.|+..|+.++++.|++...+.
T Consensus 199 vq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~~~~sr 241 (615)
T KOG0508|consen 199 VQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQCETSR 241 (615)
T ss_pred HHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhcCCcch
Confidence 9999999999865 667999999999999999999999855543
No 27
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.95 E-value=1.2e-26 Score=265.06 Aligned_cols=191 Identities=27% Similarity=0.291 Sum_probs=175.0
Q ss_pred CCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 002763 525 GRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAML 604 (883)
Q Consensus 525 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~ 604 (883)
.+.+|.||||+|+..|+.++++.|++.|+++|.+|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+.
T Consensus 120 ~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~ 199 (434)
T PHA02874 120 KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE 199 (434)
T ss_pred CCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcC-CHHHHHHHHhC
Q 002763 605 GGHENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCED-NVEIVRFLLDQ 681 (883)
Q Consensus 605 ~g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g-~~~~v~~Ll~~ 681 (883)
.|+.+++++|++.|++++..+ +.+++|.|+..+. +.+..|+ .|++++.+|.+|+||||+|+..+ +.+++++|+++
T Consensus 200 ~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~ 277 (434)
T PHA02874 200 YGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYH 277 (434)
T ss_pred cCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHC
Confidence 999999999999999987654 6678899988765 5666665 68999999999999999999876 89999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHhhcccc
Q 002763 682 KADVDKPDVHGWTPRDLADQQG-HEEIKCIFQSCKET 717 (883)
Q Consensus 682 ga~~~~~d~~g~Tpl~~A~~~~-~~~i~~~L~~~~~~ 717 (883)
|+|++.+|..|.||||+|+..+ +.++++.|+..+..
T Consensus 278 gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~ 314 (434)
T PHA02874 278 KADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVL 314 (434)
T ss_pred cCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCc
Confidence 9999999999999999999887 67788888877654
No 28
>PHA02795 ankyrin-like protein; Provisional
Probab=99.95 E-value=9.6e-27 Score=253.69 Aligned_cols=182 Identities=18% Similarity=0.156 Sum_probs=167.1
Q ss_pred HHHhcCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q 002763 535 FAALRGDDLLLHQLLKRGLDPN------ESDNNGRTALHIAAS--KGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGG 606 (883)
Q Consensus 535 ~Aa~~g~~~~v~~Ll~~g~d~n------~~d~~g~TpLh~Aa~--~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g 606 (883)
+|+..+..++++.|+.+|+++| .++..++|+||.|+. .|+.++|++|+++|||++.. ++.||||.|+..+
T Consensus 83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~ 160 (437)
T PHA02795 83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKK 160 (437)
T ss_pred HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcC
Confidence 8999999999999999999999 889999999999999 89999999999999999985 4589999999999
Q ss_pred cHHHHHHHHHcCCCCCCCC--------cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 002763 607 HENVIKLLMENHADINSGD--------VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFL 678 (883)
Q Consensus 607 ~~~iv~~Ll~~g~~~~~~~--------~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~L 678 (883)
+.+++++|+++|++.+... ..++++.|+..++.++++.|+++|+++|.+|..|.||||+|+..|+.+++++|
T Consensus 161 ~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelL 240 (437)
T PHA02795 161 ESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWL 240 (437)
T ss_pred cHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999999998543221 23456788999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHHcCC--------HHHHHHHhhccccc
Q 002763 679 LDQKADVDKPDVHGWTPRDLADQQGH--------EEIKCIFQSCKETK 718 (883)
Q Consensus 679 l~~ga~~~~~d~~g~Tpl~~A~~~~~--------~~i~~~L~~~~~~~ 718 (883)
+++||+++.+|..|+||||+|+..|+ .+++++|+++++.-
T Consensus 241 L~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI 288 (437)
T PHA02795 241 LENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI 288 (437)
T ss_pred HHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence 99999999999999999999999984 69999999988754
No 29
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.94 E-value=2.5e-26 Score=233.90 Aligned_cols=172 Identities=15% Similarity=0.172 Sum_probs=155.2
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHc
Q 002763 529 LPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKG--SENCVLLLLDYEADPNSID-SDGNVPLWEAMLG 605 (883)
Q Consensus 529 ~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g--~~~~v~~Ll~~ga~~~~~d-~~g~tpL~~A~~~ 605 (883)
+.+|||.|+..|+.+.++.|++. +|..|..|.||||+|+.++ +.+++++|+++|+++|.++ ..|.||||+|+..
T Consensus 21 ~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~ 97 (209)
T PHA02859 21 YCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSF 97 (209)
T ss_pred cCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHh
Confidence 48999999999999999999985 5778899999999999854 8999999999999999997 5899999998764
Q ss_pred ---CcHHHHHHHHHcCCCCCCCC--cchhHHHHHH--hCCHHHHHHHHHcCCCccccCCCCChHHHH-HHHcCCHHHHHH
Q 002763 606 ---GHENVIKLLMENHADINSGD--VGHFACTAAE--QNNLELLKEIVCYGGDVTRQRNNGSTALHV-AVCEDNVEIVRF 677 (883)
Q Consensus 606 ---g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~--~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~-A~~~g~~~~v~~ 677 (883)
++.+++++|+++|++++..+ +.+++|.|+. .++.+++++|+++|++++.+|.+|.||||. |+..++.+++++
T Consensus 98 ~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~ 177 (209)
T PHA02859 98 NKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDF 177 (209)
T ss_pred CccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHH
Confidence 47999999999999999776 4577888765 468999999999999999999999999996 567889999999
Q ss_pred HHhCCCCCCCCCCCCCCHHHHHHHcC
Q 002763 678 LLDQKADVDKPDVHGWTPRDLADQQG 703 (883)
Q Consensus 678 Ll~~ga~~~~~d~~g~Tpl~~A~~~~ 703 (883)
|+++|++++.+|..|+||+|+|..++
T Consensus 178 Ll~~Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 178 LTSLGIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred HHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence 99999999999999999999998654
No 30
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4e-29 Score=253.10 Aligned_cols=281 Identities=17% Similarity=0.249 Sum_probs=200.0
Q ss_pred ccccChHHHHhhhcCCc-ccccCCCC----CCCCccccccccccCCeEECCCChhHHHHHHHHHHHHHHHHHH------h
Q 002763 14 VSVCGQEEIEQLSRDGS-HYSLSTGV----LPSLGARSNRRVKLRRFIVSPYDRRYRVWETYLVLLVIYTAWA------S 82 (883)
Q Consensus 14 ~~~c~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~------~ 82 (883)
.++||.|+|.+++++.. .+.-..+. -|.+......|.++|+-+.+|+.+....--..+.-+++..+++ +
T Consensus 128 igDCCyEeYkDrkrENaERL~dd~~~e~ag~~~~p~~ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETi 207 (632)
T KOG4390|consen 128 IGDCCYEEYKDRKRENAERLQDDEDAENAGGPALPAGLSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETI 207 (632)
T ss_pred HhhhhhHHHhhhhhhhHHHhhchhhhhhcCCCCCcccchHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeec
Confidence 57899999998886642 22211111 1223333456778999999999876443222222222222221 2
Q ss_pred hhhh--------ccccCCCCCceehhhHhHHHHHHhhheeeeEEEEeCCeeEEEeCHHHHHHHHhhhhh-HHHHHhccch
Q 002763 83 PFEF--------GFLRKPQRPLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYASSWL-VFDVISTIPS 153 (883)
Q Consensus 83 p~~~--------~f~~~~~~~~~~i~~~~~~~F~~Di~l~f~~ay~~~~~~~~v~~~~~i~~~Yl~~~f-~iDlis~iP~ 153 (883)
|-.. .........++.+|..|.++|+.|+++|++.| | -+.+|+++-+ +||+++++|+
T Consensus 208 PCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EYlLRL~aA------------P--sR~rF~RSvMSiIDVvAIlPY 273 (632)
T KOG4390|consen 208 PCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEYLLRLFAA------------P--SRYRFLRSVMSIIDVVAILPY 273 (632)
T ss_pred ccCCCCCCceecccccccceeeEEecceeEEEeeHHHHHHHHcC------------c--hHHHHHHHHHHHHHHhhhhhh
Confidence 2111 11111234589999999999999999999996 3 3678999987 9999999999
Q ss_pred hhhhhhCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHH----HHHHHHHHHHHHHHHHhhhheeeecCC
Q 002763 154 ELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCC----KLIFVTLFAVHCAGCFYYLLAARYHNP 229 (883)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~lRl~Rl~r~~~~~~~l~~~~~~~~~~~~~~----~l~~~~l~~~h~~aci~~~i~~~~~~~ 229 (883)
++-+.+.. +-.+.+.+-.||++|++|++|+.++.++.+.+.|.+..|. .+++.+...+.+||.++||.+......
T Consensus 274 YigLv~t~-N~DVSGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~~at 352 (632)
T KOG4390|consen 274 YIGLVMTD-NEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSAT 352 (632)
T ss_pred heEEEecC-CccccceeEEEEeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 98776543 3456667777888899999999999988888888766554 455666667788899998887544333
Q ss_pred CCCccccccCCcccccchhHHHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 002763 230 ERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSR 309 (883)
Q Consensus 230 ~~~w~~~~~~~~~~~~~~~~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~ 309 (883)
. +.+...|||+.|+||||.||||++|.|..|+||+.+|.+.|++++|+++..|.+.|+..+..
T Consensus 353 ~-----------------FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 353 K-----------------FTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred c-----------------cccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 3 34445899999999999999999999999999999999999999999999999999887765
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002763 310 TRKFRDTIQAASSFAQR 326 (883)
Q Consensus 310 ~~~~~~~~~~~~~~m~~ 326 (883)
.++-.++..+-+.-+.+
T Consensus 416 NQRADKRrAQkKaRLAR 432 (632)
T KOG4390|consen 416 NQRADKRRAQKKARLAR 432 (632)
T ss_pred hhhhhHHHHHHHhhhhh
Confidence 54444444333333433
No 31
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.94 E-value=2e-26 Score=267.21 Aligned_cols=194 Identities=16% Similarity=0.196 Sum_probs=170.5
Q ss_pred hcCCCCchhHHHHHHhc---CCHHHHHHHHHcCCCC-CCCCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCCC-CCCCC
Q 002763 523 ARGRMDLPLSLCFAALR---GDDLLLHQLLKRGLDP-NESDNNGRTALHIAASK--GSENCVLLLLDYEADPNS-IDSDG 595 (883)
Q Consensus 523 ~~~~~~~~t~L~~Aa~~---g~~~~v~~Ll~~g~d~-n~~d~~g~TpLh~Aa~~--g~~~~v~~Ll~~ga~~~~-~d~~g 595 (883)
+..+.+|.||||.|+.. |+.++++.|+++|+|+ +.+|..|+||||+|+.. ++.+++++|+++|+|++. .+..|
T Consensus 102 n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g 181 (494)
T PHA02989 102 NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYG 181 (494)
T ss_pred CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccC
Confidence 34456789999987654 7899999999999999 79999999999999764 689999999999999998 68899
Q ss_pred CCHHHHHHHcC----cHHHHHHHHHcCCCCCCCCc--chhHHHHHHh------CCHHHHHHHHHcCCCccccCCCCChHH
Q 002763 596 NVPLWEAMLGG----HENVIKLLMENHADINSGDV--GHFACTAAEQ------NNLELLKEIVCYGGDVTRQRNNGSTAL 663 (883)
Q Consensus 596 ~tpL~~A~~~g----~~~iv~~Ll~~g~~~~~~~~--~~~l~~a~~~------~~~~~~~~Ll~~g~~~~~~d~~g~T~L 663 (883)
.||||.|+..+ +.+++++|++.|++++..+. .++++.++.. +..+++++|+. |+++|.+|.+|.|||
T Consensus 182 ~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL 260 (494)
T PHA02989 182 LTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPL 260 (494)
T ss_pred CChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHH
Confidence 99999998764 89999999999999998774 4555554433 45677776654 799999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccc
Q 002763 664 HVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKET 717 (883)
Q Consensus 664 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~ 717 (883)
|+|+..|+.+++++|+++|||++.+|..|+||||+|+..|+.++++.|++.++.
T Consensus 261 ~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~ 314 (494)
T PHA02989 261 LISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG 314 (494)
T ss_pred HHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999988754
No 32
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.94 E-value=1.4e-26 Score=269.15 Aligned_cols=215 Identities=18% Similarity=0.151 Sum_probs=178.1
Q ss_pred HhcCCCCchhHHHHHHhcCC--HHHHHHHHHcCCCCCCCCCCCCcHHHHH------------------------------
Q 002763 522 LARGRMDLPLSLCFAALRGD--DLLLHQLLKRGLDPNESDNNGRTALHIA------------------------------ 569 (883)
Q Consensus 522 ~~~~~~~~~t~L~~Aa~~g~--~~~v~~Ll~~g~d~n~~d~~g~TpLh~A------------------------------ 569 (883)
++..+.+|.||||.|+..|+ .++++.|+++|+|+|.+|..|+||||.|
T Consensus 205 VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~ 284 (764)
T PHA02716 205 VNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMI 284 (764)
T ss_pred CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhh
Confidence 33455678999999999995 5899999999999999999999999975
Q ss_pred -------HHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH--cCcHHHHHHHHHcCCCCCCCC--cchhHHHHHH---
Q 002763 570 -------ASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAML--GGHENVIKLLMENHADINSGD--VGHFACTAAE--- 635 (883)
Q Consensus 570 -------a~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~--~g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~--- 635 (883)
|..|+.+++++|+++|+++|.+|..|+||||+|+. .++.+++++|+++|++++..| +.+++|.|+.
T Consensus 285 L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~la 364 (764)
T PHA02716 285 LHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLS 364 (764)
T ss_pred hHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhh
Confidence 44578899999999999999999999999999875 467899999999999998776 4577887764
Q ss_pred -----------hCCHHHHHHHHHcCCCccccCCCCChHHHHH----HHcCCHHHHHHHHhCCC-----------------
Q 002763 636 -----------QNNLELLKEIVCYGGDVTRQRNNGSTALHVA----VCEDNVEIVRFLLDQKA----------------- 683 (883)
Q Consensus 636 -----------~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A----~~~g~~~~v~~Ll~~ga----------------- 683 (883)
.++.++++.|+++|++++.+|..|.||||.| ...++.+++++|++.|+
T Consensus 365 v~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d 444 (764)
T PHA02716 365 VVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVD 444 (764)
T ss_pred hhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccC
Confidence 3688999999999999999999999999942 23467888888887653
Q ss_pred --------------------------------------------CCCCCCCCCCCHHHHHHHcCCHH-----HHHHHhhc
Q 002763 684 --------------------------------------------DVDKPDVHGWTPRDLADQQGHEE-----IKCIFQSC 714 (883)
Q Consensus 684 --------------------------------------------~~~~~d~~g~Tpl~~A~~~~~~~-----i~~~L~~~ 714 (883)
+++..|..|+||||+|+..|+.+ ++++|++.
T Consensus 445 ~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~ 524 (764)
T PHA02716 445 DTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI 524 (764)
T ss_pred cchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC
Confidence 23455778999999999998874 45999999
Q ss_pred ccccccccccccCCCccccccccccc
Q 002763 715 KETKAQSIISVAERPQQEVHYLGRFT 740 (883)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (883)
|++. ...+..+.++++++....
T Consensus 525 GADI----N~~d~~G~TPLh~A~~~g 546 (764)
T PHA02716 525 QYNI----NIPTKNGVTPLMLTMRNN 546 (764)
T ss_pred CCCC----cccCCCCCCHHHHHHHcC
Confidence 9874 445667778877765543
No 33
>PHA03095 ankyrin-like protein; Provisional
Probab=99.94 E-value=3.1e-26 Score=265.53 Aligned_cols=195 Identities=19% Similarity=0.182 Sum_probs=180.8
Q ss_pred cCCCCchhHHHHHH--hcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCCHH
Q 002763 524 RGRMDLPLSLCFAA--LRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKG--SENCVLLLLDYEADPNSIDSDGNVPL 599 (883)
Q Consensus 524 ~~~~~~~t~L~~Aa--~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g--~~~~v~~Ll~~ga~~~~~d~~g~tpL 599 (883)
..+..|.||||.|+ ..++.++++.|+++|+|++..|..|.||||+|+..+ +.+++++|+++|++++..|..|.|||
T Consensus 112 ~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~L 191 (471)
T PHA03095 112 AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLL 191 (471)
T ss_pred CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 34556899999999 567899999999999999999999999999998865 78999999999999999999999999
Q ss_pred HHHHHc--CcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCH--HHHHHHHHcCCCccccCCCCChHHHHHHHcCCHH
Q 002763 600 WEAMLG--GHENVIKLLMENHADINSGD--VGHFACTAAEQNNL--ELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVE 673 (883)
Q Consensus 600 ~~A~~~--g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~--~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~ 673 (883)
|.|+.. ++.++++.|+++|++++..| +.+++|.|+..++. .+++.|++.|+++|.+|..|.||||+|+..|+.+
T Consensus 192 h~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~ 271 (471)
T PHA03095 192 HHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPR 271 (471)
T ss_pred HHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence 999975 67899999999999998776 56888999999875 6889999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhccccc
Q 002763 674 IVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 674 ~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~ 718 (883)
++++|+++|||++.+|..|+||+|+|+..|+.++++.|++.++..
T Consensus 272 ~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~ 316 (471)
T PHA03095 272 ACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA 316 (471)
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999988764
No 34
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=99.94 E-value=9.7e-27 Score=183.83 Aligned_cols=66 Identities=59% Similarity=0.940 Sum_probs=62.9
Q ss_pred CceEEEe---cCCCCccccEEEEccccHHHHHHHHhhhcCCCcceeecCCCCeeeeeeeeecCCEEEEE
Q 002763 808 SARVTIG---CPEKGEVAGKLVLLPSTFQELLDIGEKKFGISPAKVLNKGGAEVEDIEVIRDGDHLVFV 873 (883)
Q Consensus 808 ~~rvti~---~p~~~~~~g~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 873 (883)
|+||||| ||++++..|||+|||+|||||+++|++|||+++++|+|+||||||||++||||||||++
T Consensus 1 ~~RVtI~~~~~~~~~~~~GKvi~lP~SleeLl~ia~~kfg~~~~~v~~~dgaeIdDI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 1 PKRVTIFPNHPPEKGRRAGKVIWLPDSLEELLKIASEKFGFSATKVLNEDGAEIDDIDVIRDGDHLYLV 69 (69)
T ss_pred CcEEEEecCCCCcccCcCCEEEEcCccHHHHHHHHHHHhCCCceEEEcCCCCEEeEEEEEEcCCEEEEC
Confidence 5799999 77787888999999999999999999999999999999999999999999999999975
No 35
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.94 E-value=1.5e-25 Score=270.41 Aligned_cols=209 Identities=24% Similarity=0.246 Sum_probs=181.4
Q ss_pred CCCCchhHHHHHHhcCCH-HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 002763 525 GRMDLPLSLCFAALRGDD-LLLHQLLKRGLDPNESDNNGRTALHIAASKG-SENCVLLLLDYEADPNSIDSDGNVPLWEA 602 (883)
Q Consensus 525 ~~~~~~t~L~~Aa~~g~~-~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g-~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A 602 (883)
.+..|.||||+|+..|+. ++++.|++.|+++|..|.+|.||||+|+..| +.+++++|+..|++++.+|..|.||||+|
T Consensus 269 ~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A 348 (682)
T PHA02876 269 IDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQA 348 (682)
T ss_pred CCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHH
Confidence 345688999999999986 6889999999999999999999999999998 58999999999999999999999999999
Q ss_pred HHc-CcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCC-HHHHHHH
Q 002763 603 MLG-GHENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDN-VEIVRFL 678 (883)
Q Consensus 603 ~~~-g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~-~~~v~~L 678 (883)
+.. ++.+++++|++.|++++..+ +.+++|.|+..|+.++++.|+++|++++..+..|.||||+|+..++ ..++++|
T Consensus 349 ~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~L 428 (682)
T PHA02876 349 STLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTL 428 (682)
T ss_pred HHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHH
Confidence 985 57889999999999998766 5678899999999999999999999999999999999999988766 5678999
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHhhcccccccccccccCCCcccccccc
Q 002763 679 LDQKADVDKPDVHGWTPRDLADQQG-HEEIKCIFQSCKETKAQSIISVAERPQQEVHYLG 737 (883)
Q Consensus 679 l~~ga~~~~~d~~g~Tpl~~A~~~~-~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (883)
+++|+++|.+|..|+||||+|+..| +.+++++|+++|++. ...+..+.++++.+.
T Consensus 429 l~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~----n~~d~~g~tpl~~a~ 484 (682)
T PHA02876 429 IDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV----NAINIQNQYPLLIAL 484 (682)
T ss_pred HhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCC----CCCCCCCCCHHHHHH
Confidence 9999999999999999999999876 689999999998773 334445555555543
No 36
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.93 E-value=3.3e-25 Score=267.48 Aligned_cols=214 Identities=22% Similarity=0.233 Sum_probs=176.2
Q ss_pred HHHHhcCCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----------------
Q 002763 519 ENMLARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLL---------------- 582 (883)
Q Consensus 519 ~~~~~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll---------------- 582 (883)
+..++..+.+|.||||+||..|+.+++++|+++|+|++..+.+|.||||+|+..|+.+++++|+
T Consensus 168 Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~a 247 (682)
T PHA02876 168 GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKA 247 (682)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHH
Confidence 3333444567899999999999999999999999999999999999999999888877766554
Q ss_pred -------------hCCCCCCCCCCCCCCHHHHHHHcCcH-HHHHHHHHcCCCCCCCC--cchhHHHHHHhC-CHHHHHHH
Q 002763 583 -------------DYEADPNSIDSDGNVPLWEAMLGGHE-NVIKLLMENHADINSGD--VGHFACTAAEQN-NLELLKEI 645 (883)
Q Consensus 583 -------------~~ga~~~~~d~~g~tpL~~A~~~g~~-~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~-~~~~~~~L 645 (883)
+.|++++..|..|.||||+|+..++. +++++|++.|++++..+ +.+++|.|+..| +.++++.|
T Consensus 248 i~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~L 327 (682)
T PHA02876 248 IRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTL 327 (682)
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHH
Confidence 45667788888899999999998886 68899999999887665 567888999888 58899999
Q ss_pred HHcCCCccccCCCCChHHHHHHHc-CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhccccccccccc
Q 002763 646 VCYGGDVTRQRNNGSTALHVAVCE-DNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETKAQSIIS 724 (883)
Q Consensus 646 l~~g~~~~~~d~~g~T~Lh~A~~~-g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~~~~~~~ 724 (883)
+..|++++..|..|.||||+|+.. ++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++++... .
T Consensus 328 l~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~----~ 403 (682)
T PHA02876 328 IMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE----A 403 (682)
T ss_pred HHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc----c
Confidence 999999999999999999999885 47888899999999999999999999999999999999999998887642 2
Q ss_pred ccCCCccccccc
Q 002763 725 VAERPQQEVHYL 736 (883)
Q Consensus 725 ~~~~~~~~~~~~ 736 (883)
....+.+++|++
T Consensus 404 ~~~~g~T~Lh~A 415 (682)
T PHA02876 404 LSQKIGTALHFA 415 (682)
T ss_pred cCCCCCchHHHH
Confidence 233334455544
No 37
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-25 Score=249.02 Aligned_cols=221 Identities=22% Similarity=0.349 Sum_probs=147.6
Q ss_pred CCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-----CCCCCCCCCCCCCCHH
Q 002763 525 GRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLD-----YEADPNSIDSDGNVPL 599 (883)
Q Consensus 525 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-----~ga~~~~~d~~g~tpL 599 (883)
++..+.||||.||..++.+..+.|++.|+||...|.+|.+|+|.||..|..+|.+..+. .+.++|.-+..|.|||
T Consensus 150 ~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pL 229 (929)
T KOG0510|consen 150 EDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPL 229 (929)
T ss_pred cccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcch
Confidence 34456677777777777776677777777777777777777777777777777777766 3556666677777777
Q ss_pred HHHHHcCcHHHHHHHHHcCCCCCC-----------------CCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChH
Q 002763 600 WEAMLGGHENVIKLLMENHADINS-----------------GDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTA 662 (883)
Q Consensus 600 ~~A~~~g~~~iv~~Ll~~g~~~~~-----------------~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~ 662 (883)
|.|+..|+.++++.+++.|+.... .|+.+++|.|+.+|+.+.++.|+..|++++.+++++.||
T Consensus 230 hlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~sp 309 (929)
T KOG0510|consen 230 HLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESP 309 (929)
T ss_pred hhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCc
Confidence 777777777777777766553321 345566677777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHh-CC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccccccccccccCCCccccccccccc
Q 002763 663 LHVAVCEDNVEIVRFLLD-QK-ADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETKAQSIISVAERPQQEVHYLGRFT 740 (883)
Q Consensus 663 Lh~A~~~g~~~~v~~Ll~-~g-a~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (883)
||.||..|+.+.++-||+ .| ...|..|-.|.||||+|+++||..++++|++.|+.... ..+.+..+.+++|.++...
T Consensus 310 LH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~-~~e~D~dg~TaLH~Aa~~g 388 (929)
T KOG0510|consen 310 LHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLN-MSEADSDGNTALHLAAKYG 388 (929)
T ss_pred hHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhc-ccccccCCchhhhHHHHhc
Confidence 777777777777777776 33 34566666777777777777777777777777665432 1133556666666666666
Q ss_pred CCCccc
Q 002763 741 SEPAIR 746 (883)
Q Consensus 741 ~~~~~~ 746 (883)
....++
T Consensus 389 ~~~av~ 394 (929)
T KOG0510|consen 389 NTSAVQ 394 (929)
T ss_pred cHHHHH
Confidence 554443
No 38
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-25 Score=248.74 Aligned_cols=211 Identities=26% Similarity=0.312 Sum_probs=186.0
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCc
Q 002763 528 DLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGH 607 (883)
Q Consensus 528 ~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~ 607 (883)
.+.+|+|.|+..|+.+.++.|++.|+|+|..|..|.||||+||..++.|..+.|++.|+|+-..|.+|++|+|.|+++|.
T Consensus 120 ~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s 199 (929)
T KOG0510|consen 120 NKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGS 199 (929)
T ss_pred hccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcc
Confidence 45789999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHH-----cCCCCCC--CCcchhHHHHHHhCCHHHHHHHHHcCCC---------------ccccCCCCChHHHH
Q 002763 608 ENVIKLLME-----NHADINS--GDVGHFACTAAEQNNLELLKEIVCYGGD---------------VTRQRNNGSTALHV 665 (883)
Q Consensus 608 ~~iv~~Ll~-----~g~~~~~--~~~~~~l~~a~~~~~~~~~~~Ll~~g~~---------------~~~~d~~g~T~Lh~ 665 (883)
.++.++.+. .+..+|. ....+++|.|+..|+.++++..++.|.. +|..|++|.||||+
T Consensus 200 ~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~ 279 (929)
T KOG0510|consen 200 KECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHY 279 (929)
T ss_pred hhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHH
Confidence 999999997 5555654 4456889999999999999999998752 56678999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccccccccccccCCCccccccccccc
Q 002763 666 AVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETKAQSIISVAERPQQEVHYLGRFT 740 (883)
Q Consensus 666 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (883)
||++|+.+++..|+..||+++.++.++.||||.|+..|+.+.++-|++ .. .....+..+..+.+++|..++-.
T Consensus 280 a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~-~~rllne~D~~g~tpLHlaa~~g 352 (929)
T KOG0510|consen 280 AARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQ-ES-DTRLLNESDLHGMTPLHLAAKSG 352 (929)
T ss_pred HHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHh-Cc-CccccccccccCCCchhhhhhcC
Confidence 999999999999999999999999999999999999999999999998 22 22344555556667777766433
No 39
>PHA02798 ankyrin-like protein; Provisional
Probab=99.93 E-value=9.1e-25 Score=252.95 Aligned_cols=207 Identities=18% Similarity=0.173 Sum_probs=176.8
Q ss_pred chhHHHH--HHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc-----CCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 002763 529 LPLSLCF--AALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASK-----GSENCVLLLLDYEADPNSIDSDGNVPLWE 601 (883)
Q Consensus 529 ~~t~L~~--Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~-----g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~ 601 (883)
+.|+++. +...++.++++.|+++|+|+|.+|..|.||||.|+.+ ++.+++++|+++|+|+|.+|..|.||||+
T Consensus 36 ~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~ 115 (489)
T PHA02798 36 EYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYC 115 (489)
T ss_pred cchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHH
Confidence 3455543 3445689999999999999999999999999999864 77999999999999999999999999999
Q ss_pred HHHcC---cHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCC---HHHHHHHHHcCCCccccC-CCCChHHHHHHHc---
Q 002763 602 AMLGG---HENVIKLLMENHADINSGD--VGHFACTAAEQNN---LELLKEIVCYGGDVTRQR-NNGSTALHVAVCE--- 669 (883)
Q Consensus 602 A~~~g---~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~---~~~~~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~--- 669 (883)
|+..+ +.+++++|+++|++++..+ +.+++|.|+..++ .++++.|+++|++++..+ ..|.||||.|+..
T Consensus 116 a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~ 195 (489)
T PHA02798 116 LLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNID 195 (489)
T ss_pred HHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccc
Confidence 99986 7899999999999998766 5678899999987 999999999999999885 5789999998764
Q ss_pred -CCHHHHHHHHhCCCC---------------------------------------CCCCCCCCCCHHHHHHHcCCHHHHH
Q 002763 670 -DNVEIVRFLLDQKAD---------------------------------------VDKPDVHGWTPRDLADQQGHEEIKC 709 (883)
Q Consensus 670 -g~~~~v~~Ll~~ga~---------------------------------------~~~~d~~g~Tpl~~A~~~~~~~i~~ 709 (883)
++.+++++|+++|++ +|.+|..|+||||+|+..|+.++++
T Consensus 196 ~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~ 275 (489)
T PHA02798 196 RIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFE 275 (489)
T ss_pred cCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHH
Confidence 478999999988764 4456778999999999999999999
Q ss_pred HHhhcccccccccccccCCCcccccccccc
Q 002763 710 IFQSCKETKAQSIISVAERPQQEVHYLGRF 739 (883)
Q Consensus 710 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (883)
+|++.|++. ...+..+.++++.+...
T Consensus 276 ~LL~~GAdi----n~~d~~G~TpL~~A~~~ 301 (489)
T PHA02798 276 YLLQLGGDI----NIITELGNTCLFTAFEN 301 (489)
T ss_pred HHHHcCCcc----cccCCCCCcHHHHHHHc
Confidence 999999873 44555666777665443
No 40
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.93 E-value=6.7e-25 Score=254.39 Aligned_cols=209 Identities=15% Similarity=0.173 Sum_probs=174.9
Q ss_pred CchhHHHHHHhcC------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCC-CCCCCCCCC
Q 002763 528 DLPLSLCFAALRG------DDLLLHQLLKRGLDPNESDNNGRTALHIAASK---GSENCVLLLLDYEADP-NSIDSDGNV 597 (883)
Q Consensus 528 ~~~t~L~~Aa~~g------~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~ga~~-~~~d~~g~t 597 (883)
.+.||||.|+.++ +.++++.|+++|+|+|.+|.+|.||||.|+.. |+.+++++|+++|+|+ +.+|..|.|
T Consensus 68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t 147 (494)
T PHA02989 68 YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN 147 (494)
T ss_pred CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC
Confidence 3579999887654 46899999999999999999999999988765 6899999999999999 789999999
Q ss_pred HHHHHHHc--CcHHHHHHHHHcCCCCCC-C--CcchhHHHHHHh----CCHHHHHHHHHcCCCccccCCCCChHHHHHHH
Q 002763 598 PLWEAMLG--GHENVIKLLMENHADINS-G--DVGHFACTAAEQ----NNLELLKEIVCYGGDVTRQRNNGSTALHVAVC 668 (883)
Q Consensus 598 pL~~A~~~--g~~~iv~~Ll~~g~~~~~-~--~~~~~l~~a~~~----~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~ 668 (883)
|||+|+.. ++.+++++|+++|++++. . .+.++++.|+.. ++.+++++|+++|++++.+|..|.||||.|+.
T Consensus 148 pLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~ 227 (494)
T PHA02989 148 LLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLD 227 (494)
T ss_pred HHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHH
Confidence 99998764 588999999999999876 3 355777777654 48999999999999999999999999998775
Q ss_pred c------CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccccccccccccCCCcccccccccccC
Q 002763 669 E------DNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETKAQSIISVAERPQQEVHYLGRFTS 741 (883)
Q Consensus 669 ~------g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (883)
. +..+++++|+. |+++|.+|..|+||||+|+..|+.+++++|++.|++. ...+..+.++++++.....
T Consensus 228 ~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadi----n~~d~~G~TpL~~A~~~~~ 301 (494)
T PHA02989 228 NNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDI----YNVSKDGDTVLTYAIKHGN 301 (494)
T ss_pred hchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCc----cccCCCCCCHHHHHHHcCC
Confidence 4 35677887654 7999999999999999999999999999999999874 4445566677777655443
No 41
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-25 Score=234.19 Aligned_cols=184 Identities=30% Similarity=0.383 Sum_probs=163.4
Q ss_pred HHHhcCCHHHHHHHHHcCC-----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCC--------CCCCCCHHH
Q 002763 535 FAALRGDDLLLHQLLKRGL-----DPNESDNNGRTALHIAASKGSENCVLLLLDY-EADPNSI--------DSDGNVPLW 600 (883)
Q Consensus 535 ~Aa~~g~~~~v~~Ll~~g~-----d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~--------d~~g~tpL~ 600 (883)
-|++.|+...+..|+-... ++-..+.+|.|||.+||.+||.++|++|+++ ++++... .-+|-+|||
T Consensus 10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW 89 (615)
T KOG0508|consen 10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW 89 (615)
T ss_pred HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence 5777888887777776432 1223456889999999999999999999994 7776543 346889999
Q ss_pred HHHHcCcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 002763 601 EAMLGGHENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFL 678 (883)
Q Consensus 601 ~A~~~g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~L 678 (883)
.|+..||.++|++|+++|+++|... ..+++-.||..|+++++++|+++|+|++..|++|+|.||+||.+||.+++++|
T Consensus 90 aAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyL 169 (615)
T KOG0508|consen 90 AASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYL 169 (615)
T ss_pred HHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHH
Confidence 9999999999999999999998654 44788999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhccccc
Q 002763 679 LDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 679 l~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~ 718 (883)
++.|||+|.++..|+|+||.|++.|+.+++++|+++++.-
T Consensus 170 le~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i 209 (615)
T KOG0508|consen 170 LEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI 209 (615)
T ss_pred HHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCcee
Confidence 9999999999999999999999999999999999999874
No 42
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.93 E-value=2.6e-23 Score=254.13 Aligned_cols=175 Identities=21% Similarity=0.230 Sum_probs=155.5
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 002763 540 GDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHA 619 (883)
Q Consensus 540 g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~ 619 (883)
.+.++-..+.+.+.. ..+.++.++||.||..|+.++++.|+++|+|+|..|..|+||||.|+..|+.+++++|+++|+
T Consensus 505 ~~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga 582 (823)
T PLN03192 505 HDLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC 582 (823)
T ss_pred ccccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence 444444455555443 345567899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Q 002763 620 DINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRD 697 (883)
Q Consensus 620 ~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~ 697 (883)
+++..| +.+++|.|+..|+.++++.|++.+...+ ...|.+|||.|+..|+.+++++|+++|+|+|.+|.+|+||||
T Consensus 583 din~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh 660 (823)
T PLN03192 583 NVHIRDANGNTALWNAISAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQ 660 (823)
T ss_pred CCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence 998765 6688999999999999999998877654 346789999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHhhccccc
Q 002763 698 LADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 698 ~A~~~~~~~i~~~L~~~~~~~ 718 (883)
+|+..|+.+++++|+++|++.
T Consensus 661 ~A~~~g~~~iv~~Ll~~GAdv 681 (823)
T PLN03192 661 VAMAEDHVDMVRLLIMNGADV 681 (823)
T ss_pred HHHHCCcHHHHHHHHHcCCCC
Confidence 999999999999999999874
No 43
>PHA02917 ankyrin-like protein; Provisional
Probab=99.92 E-value=3.3e-24 Score=251.87 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=162.2
Q ss_pred CCCCchhHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCC
Q 002763 525 GRMDLPLSLCFAALR---GDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSEN----CVLLLLDYEADPNSIDSDGNV 597 (883)
Q Consensus 525 ~~~~~~t~L~~Aa~~---g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~----~v~~Ll~~ga~~~~~d~~g~t 597 (883)
.+.+|.||||+|+.. |+.++++.||+.|+|++..|..|+||||.|+..|+.+ ++++|++++...|..|. .+
T Consensus 28 ~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--~~ 105 (661)
T PHA02917 28 RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--NI 105 (661)
T ss_pred cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--ch
Confidence 356789999997554 8899999999999999999999999999999999854 56788887654555443 37
Q ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCCCC--cchhHHHH--HHhCCHHHHHHHHHcCCCccccCC---CC-----------
Q 002763 598 PLWEAMLGGHENVIKLLMENHADINSGD--VGHFACTA--AEQNNLELLKEIVCYGGDVTRQRN---NG----------- 659 (883)
Q Consensus 598 pL~~A~~~g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a--~~~~~~~~~~~Ll~~g~~~~~~d~---~g----------- 659 (883)
+++.|+..++.++|++|+++|++++..| +.++++.| +..|+.+++++|+++|+++|.+|. .|
T Consensus 106 ~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~ 185 (661)
T PHA02917 106 FSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNC 185 (661)
T ss_pred HHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccccc
Confidence 7888999999999999999999999865 55777744 457899999999999999987653 34
Q ss_pred ChHHHHHHH-----------cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHhhcccc
Q 002763 660 STALHVAVC-----------EDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHE--EIKCIFQSCKET 717 (883)
Q Consensus 660 ~T~Lh~A~~-----------~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~--~i~~~L~~~~~~ 717 (883)
.||||+|+. .++.+++++|+++|||+|.+|.+|+||||+|+..|+. +++++|++ ++.
T Consensus 186 ~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d 255 (661)
T PHA02917 186 GTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GID 255 (661)
T ss_pred ccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCc
Confidence 599999986 4689999999999999999999999999999999985 79999975 543
No 44
>PHA02730 ankyrin-like protein; Provisional
Probab=99.91 E-value=9e-24 Score=241.14 Aligned_cols=190 Identities=15% Similarity=0.094 Sum_probs=163.3
Q ss_pred cCCCCchhHHHHHHhcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCC--CCCCCCCCCC
Q 002763 524 RGRMDLPLSLCFAALRG---DDLLLHQLLKRGLDPNESDNNGRTALHIAASKG--SENCVLLLLDYEA--DPNSIDSDGN 596 (883)
Q Consensus 524 ~~~~~~~t~L~~Aa~~g---~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g--~~~~v~~Ll~~ga--~~~~~d~~g~ 596 (883)
..+.+|.||||+|+..| +.++++.||++|+|++.+|..|+||||+|+..| +.++|++|+++|+ +++..|..+.
T Consensus 36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d 115 (672)
T PHA02730 36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND 115 (672)
T ss_pred hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence 34567899999999997 599999999999999999999999999999976 7999999999966 4577788899
Q ss_pred CHHHHHHH--cCcHHHHHHHHH-cCCCCCCC-------CcchhHHHHHHhCCHHHHHHHHHcCCCcc-------ccCCCC
Q 002763 597 VPLWEAML--GGHENVIKLLME-NHADINSG-------DVGHFACTAAEQNNLELLKEIVCYGGDVT-------RQRNNG 659 (883)
Q Consensus 597 tpL~~A~~--~g~~~iv~~Ll~-~g~~~~~~-------~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~-------~~d~~g 659 (883)
+||+.++. +++.+++++|++ .+++++.. .+..+...++..++.+++++|+++|++++ ..|..+
T Consensus 116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~ 195 (672)
T PHA02730 116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDR 195 (672)
T ss_pred chHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCc
Confidence 99999999 889999999997 66776654 34567789999999999999999999995 244455
Q ss_pred C-hHHHHH------HHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHhh
Q 002763 660 S-TALHVA------VCEDNVEIVRFLLDQKADVDKPDVHGWTPRDL--ADQQGHEEIKCIFQS 713 (883)
Q Consensus 660 ~-T~Lh~A------~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~--A~~~~~~~i~~~L~~ 713 (883)
. |.||++ ..+++.|++++|+++|||+|.+|..|.||||+ |...|+.+++++|++
T Consensus 196 c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~ 258 (672)
T PHA02730 196 CKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK 258 (672)
T ss_pred cchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence 5 455533 46689999999999999999999999999995 566678999999998
No 45
>PHA02917 ankyrin-like protein; Provisional
Probab=99.90 E-value=2.8e-23 Score=244.12 Aligned_cols=196 Identities=19% Similarity=0.153 Sum_probs=167.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcH----HHHHHH
Q 002763 542 DLLLHQLLKRGLDPNESDNNGRTALHIAASK---GSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHE----NVIKLL 614 (883)
Q Consensus 542 ~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~----~iv~~L 614 (883)
.+.+++|+..|.+++.+|.+|+||||+||.. |+.++|++|+++|++++.+|..|.||||+|+..|+. +++++|
T Consensus 12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~L 91 (661)
T PHA02917 12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMAL 91 (661)
T ss_pred HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHH
Confidence 5778999999999999999999999998655 889999999999999999999999999999999985 456788
Q ss_pred HHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHH--HcCCHHHHHHHHhCCCCCCCCCC--
Q 002763 615 MENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAV--CEDNVEIVRFLLDQKADVDKPDV-- 690 (883)
Q Consensus 615 l~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~--~~g~~~~v~~Ll~~ga~~~~~d~-- 690 (883)
++.+...+..+...+++.|+..++.+++++|+++|+|+|.+|.+|+||||.|+ ..|+.+++++|+++||+++..|.
T Consensus 92 l~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~ 171 (661)
T PHA02917 92 LEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDD 171 (661)
T ss_pred HhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccc
Confidence 88765455556556668899999999999999999999999999999999654 47899999999999999987654
Q ss_pred -CC-----------CCHHHHHHH-----------cCCHHHHHHHhhcccccccccccccCCCcccccccccccC
Q 002763 691 -HG-----------WTPRDLADQ-----------QGHEEIKCIFQSCKETKAQSIISVAERPQQEVHYLGRFTS 741 (883)
Q Consensus 691 -~g-----------~Tpl~~A~~-----------~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (883)
.| .||||+|+. .++.+++++|+++|++. ...+..+.+++|++.....
T Consensus 172 ~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv----n~~d~~G~TpLh~A~~~g~ 241 (661)
T PHA02917 172 EYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP----SSIDKNYCTALQYYIKSSH 241 (661)
T ss_pred ccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc----ccCCCCCCcHHHHHHHcCC
Confidence 34 599999986 46899999999999873 4555677778887765544
No 46
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.90 E-value=2.7e-24 Score=254.00 Aligned_cols=194 Identities=36% Similarity=0.489 Sum_probs=163.4
Q ss_pred CCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 002763 525 GRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKG-SENCVLLLLDYEADPNSIDSDGNVPLWEAM 603 (883)
Q Consensus 525 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g-~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~ 603 (883)
....|.||||.|+..++..+++.++++|+++|..|..|.||+|+|+..| ..+.+..+++.|+++|.....|.||||.|+
T Consensus 403 ~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaa 482 (1143)
T KOG4177|consen 403 AGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAA 482 (1143)
T ss_pred CCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhh
Confidence 4456778888888888888888888888888888888888888888888 888888888888888888888888888888
Q ss_pred HcCcHHHHHHHHHcCCCCCCC--CcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhC
Q 002763 604 LGGHENVIKLLMENHADINSG--DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQ 681 (883)
Q Consensus 604 ~~g~~~iv~~Ll~~g~~~~~~--~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ 681 (883)
..||.++++.|++.++..+.. ...+.+|.+...+...+++.++++|++++.++..|+||||.||..|+.++|++||++
T Consensus 483 q~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~ 562 (1143)
T KOG4177|consen 483 QEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEH 562 (1143)
T ss_pred ccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhC
Confidence 888888888888887655543 344667888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhccccc
Q 002763 682 KADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 682 ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~ 718 (883)
|||++.+++.|+||||.|+..|+.+|+.+|+++|++.
T Consensus 563 gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v 599 (1143)
T KOG4177|consen 563 GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASV 599 (1143)
T ss_pred CccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCC
Confidence 8888888888888888888888888888888888874
No 47
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.89 E-value=2.2e-22 Score=204.91 Aligned_cols=156 Identities=17% Similarity=0.192 Sum_probs=139.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--cHHHHHHHHHcCCCCCCCC---cchhHHHHH
Q 002763 560 NNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGG--HENVIKLLMENHADINSGD---VGHFACTAA 634 (883)
Q Consensus 560 ~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g--~~~iv~~Ll~~g~~~~~~~---~~~~l~~a~ 634 (883)
+.+.||||.|+..|+.++|+.|++. ++..|..|.||||.|+..+ +.+++++|+++|++++..+ +.+++|.|+
T Consensus 19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~ 95 (209)
T PHA02859 19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL 95 (209)
T ss_pred hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence 5678999999999999999999975 4667889999999999865 8999999999999999764 457888877
Q ss_pred Hh---CCHHHHHHHHHcCCCccccCCCCChHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCCHHHH-HHHcCCHHHH
Q 002763 635 EQ---NNLELLKEIVCYGGDVTRQRNNGSTALHVAVC--EDNVEIVRFLLDQKADVDKPDVHGWTPRDL-ADQQGHEEIK 708 (883)
Q Consensus 635 ~~---~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~--~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~-A~~~~~~~i~ 708 (883)
.. ++.++++.|+++|+++|.+|.+|.||||+|+. .++.+++++|+++|++++.+|..|.||||. |+..++.+++
T Consensus 96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv 175 (209)
T PHA02859 96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIF 175 (209)
T ss_pred HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHH
Confidence 64 47999999999999999999999999999986 468999999999999999999999999995 5678899999
Q ss_pred HHHhhccccc
Q 002763 709 CIFQSCKETK 718 (883)
Q Consensus 709 ~~L~~~~~~~ 718 (883)
++|+++|+..
T Consensus 176 ~~Ll~~Gadi 185 (209)
T PHA02859 176 DFLTSLGIDI 185 (209)
T ss_pred HHHHHcCCCC
Confidence 9999998763
No 48
>PHA02792 ankyrin-like protein; Provisional
Probab=99.88 E-value=3.3e-22 Score=225.88 Aligned_cols=214 Identities=12% Similarity=0.069 Sum_probs=170.8
Q ss_pred HHHHhcCCCCchhHHHHHHh-cCCHHHHHHHHHcCCCCC------------------------------------CCCCC
Q 002763 519 ENMLARGRMDLPLSLCFAAL-RGDDLLLHQLLKRGLDPN------------------------------------ESDNN 561 (883)
Q Consensus 519 ~~~~~~~~~~~~t~L~~Aa~-~g~~~~v~~Ll~~g~d~n------------------------------------~~d~~ 561 (883)
++..+..+.++.+++++|+. .|+.+++++|+++|+|++ ..|..
T Consensus 95 GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 174 (631)
T PHA02792 95 GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRM 174 (631)
T ss_pred CCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCC
Confidence 33333334457889999966 699999999999998743 23456
Q ss_pred CCcHHHHHHHcC-------CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--cHHHHHHHHHcCC-------------
Q 002763 562 GRTALHIAASKG-------SENCVLLLLDYEADPNSIDSDGNVPLWEAMLGG--HENVIKLLMENHA------------- 619 (883)
Q Consensus 562 g~TpLh~Aa~~g-------~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g--~~~iv~~Ll~~g~------------- 619 (883)
|.||||+|+.++ +.++++.|+.+|++++.+|..|.||||+|+.+. ..+++++|++..-
T Consensus 175 g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~ 254 (631)
T PHA02792 175 GKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYL 254 (631)
T ss_pred CCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHH
Confidence 999999999999 899999999999999999999999999999988 6778887765311
Q ss_pred ---------CCC--------------------------------------------------------------------
Q 002763 620 ---------DIN-------------------------------------------------------------------- 622 (883)
Q Consensus 620 ---------~~~-------------------------------------------------------------------- 622 (883)
+++
T Consensus 255 ~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~ 334 (631)
T PHA02792 255 RKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATL 334 (631)
T ss_pred HHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcc
Confidence 011
Q ss_pred -CCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCC--ChHHHHHHHcCCH---HHHHHHHhCCCCCCCCCCCCCCHH
Q 002763 623 -SGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNG--STALHVAVCEDNV---EIVRFLLDQKADVDKPDVHGWTPR 696 (883)
Q Consensus 623 -~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g--~T~Lh~A~~~g~~---~~v~~Ll~~ga~~~~~d~~g~Tpl 696 (883)
.......++.|+..|+.+++++|+++|+|++.+|.+| .||||.|+..+.. +++++|+++|||+|.+|..|+|||
T Consensus 335 ~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPL 414 (631)
T PHA02792 335 YRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSIL 414 (631)
T ss_pred ccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchH
Confidence 0011123345788999999999999999999999875 6999998877665 468999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHhhcccccccccccccCCCccccccc
Q 002763 697 DLADQQGHEEIKCIFQSCKETKAQSIISVAERPQQEVHYL 736 (883)
Q Consensus 697 ~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (883)
|+|+..++.+++++|+++|+.. ......+.++++++
T Consensus 415 h~Aa~~~n~eivelLLs~GADI----N~kD~~G~TpL~~A 450 (631)
T PHA02792 415 YYCIESHSVSLVEWLIDNGADI----NITTKYGSTCIGIC 450 (631)
T ss_pred HHHHHcCCHHHHHHHHHCCCCC----CCcCCCCCCHHHHH
Confidence 9999999999999999998763 33444555666554
No 49
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.88 E-value=1.8e-22 Score=238.57 Aligned_cols=191 Identities=29% Similarity=0.343 Sum_probs=182.8
Q ss_pred CCchhHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 002763 527 MDLPLSLCFAALRG-DDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLG 605 (883)
Q Consensus 527 ~~~~t~L~~Aa~~g-~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~ 605 (883)
..|.|++|+|+..| ..+....+++.|+++|.....|.||||+|+..||.++++.|++.++..+.....|-|++|.|...
T Consensus 438 ~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~ 517 (1143)
T KOG4177|consen 438 KLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADE 517 (1143)
T ss_pred hcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhh
Confidence 34589999999999 78889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCC
Q 002763 606 GHENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKA 683 (883)
Q Consensus 606 g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga 683 (883)
++..+++.++++|++++..+ ..+++|.|+..|+.++|++|+++|+|++.+|+.|+||||.||..|+.+++.+|+++||
T Consensus 518 ~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA 597 (1143)
T KOG4177|consen 518 DTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGA 597 (1143)
T ss_pred hhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCC
Confidence 99999999999999988766 4588899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccc
Q 002763 684 DVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKET 717 (883)
Q Consensus 684 ~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~ 717 (883)
++|..|.+|.|||+.|+..|+.+++++|...++.
T Consensus 598 ~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 598 SVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred CCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence 9999999999999999999999999999998877
No 50
>PHA02730 ankyrin-like protein; Provisional
Probab=99.88 E-value=9.5e-22 Score=224.66 Aligned_cols=206 Identities=19% Similarity=0.192 Sum_probs=168.5
Q ss_pred hhhhhHHHHHhcCCCCchhHHHH--HHhcCCHHHHHHHHH--------------------------------cCCCCCC-
Q 002763 513 GVLLETENMLARGRMDLPLSLCF--AALRGDDLLLHQLLK--------------------------------RGLDPNE- 557 (883)
Q Consensus 513 ~~l~~~~~~~~~~~~~~~t~L~~--Aa~~g~~~~v~~Ll~--------------------------------~g~d~n~- 557 (883)
..|.+.+..++..+.+|.||||+ |+..|+.++++.|++ +|+|...
T Consensus 219 ~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 298 (672)
T PHA02730 219 KCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIV 298 (672)
T ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHH
Confidence 33444444555567789999995 556678999999999 7888755
Q ss_pred -------------------CCCCCCc---------------------HHHHHHHcC---CHHHHHHHHhCCCCCCCCCCC
Q 002763 558 -------------------SDNNGRT---------------------ALHIAASKG---SENCVLLLLDYEADPNSIDSD 594 (883)
Q Consensus 558 -------------------~d~~g~T---------------------pLh~Aa~~g---~~~~v~~Ll~~ga~~~~~d~~ 594 (883)
.|..|.+ .||.=...| +.+++++|+++|||+|.. ..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~ 377 (672)
T PHA02730 299 NLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TD 377 (672)
T ss_pred HHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CC
Confidence 4566654 666666655 699999999999999985 79
Q ss_pred CCCHHHHHHHcCc----HHHHHHHHHcCC--CCCCCC--cchhHH---HHHHhC---------CHHHHHHHHHcCCCccc
Q 002763 595 GNVPLWEAMLGGH----ENVIKLLMENHA--DINSGD--VGHFAC---TAAEQN---------NLELLKEIVCYGGDVTR 654 (883)
Q Consensus 595 g~tpL~~A~~~g~----~~iv~~Ll~~g~--~~~~~~--~~~~l~---~a~~~~---------~~~~~~~Ll~~g~~~~~ 654 (883)
|.||||.|+..++ .+++++|+++|+ +++..+ +.++++ .|...+ ..+++++|+.+|+|+|.
T Consensus 378 G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINa 457 (672)
T PHA02730 378 NNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDM 457 (672)
T ss_pred CCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhc
Confidence 9999999998875 899999999998 466554 445565 233222 23679999999999999
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHH--cCCHHHHHHHhhcccccc
Q 002763 655 QRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDV-HGWTPRDLADQ--QGHEEIKCIFQSCKETKA 719 (883)
Q Consensus 655 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~Tpl~~A~~--~~~~~i~~~L~~~~~~~~ 719 (883)
+|..|.||||+|+..++.+++++|+++||+++.+|. .|+||+|.|+. .++.+++++|+++++...
T Consensus 458 kD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~ 525 (672)
T PHA02730 458 IDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE 525 (672)
T ss_pred cCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence 999999999999999999999999999999999997 59999999987 478999999999998754
No 51
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.88 E-value=1.3e-22 Score=191.62 Aligned_cols=188 Identities=25% Similarity=0.192 Sum_probs=171.7
Q ss_pred CCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 002763 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLG 605 (883)
Q Consensus 526 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~ 605 (883)
+-+|..+++.|+-+|+...+..+|.+|+..|+.+..+++|+.+++...+.+.+..|.++ -+|..|..|.|||.||+..
T Consensus 93 ~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~ 170 (296)
T KOG0502|consen 93 DPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAK 170 (296)
T ss_pred CchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhc
Confidence 44688999999999999999999999999999999999999999999999988877764 4688899999999999999
Q ss_pred CcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCC
Q 002763 606 GHENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKA 683 (883)
Q Consensus 606 g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga 683 (883)
||..+|++|++.|++++.-. ..+.+.+|+..|-.++++.|+.++.|+|..|-+|.|||-+|++.|+.++++.||+.||
T Consensus 171 G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA 250 (296)
T KOG0502|consen 171 GHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGA 250 (296)
T ss_pred CchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCC
Confidence 99999999999999998644 4577899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHhhccc
Q 002763 684 DVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKE 716 (883)
Q Consensus 684 ~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~ 716 (883)
|++..+..|++++++|...|+. +++..++.-.
T Consensus 251 d~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~ 282 (296)
T KOG0502|consen 251 DVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHA 282 (296)
T ss_pred CcccccccCCcHHHHHHHhhhH-HHHHHHHHHH
Confidence 9999999999999999999999 4444444333
No 52
>PHA02795 ankyrin-like protein; Provisional
Probab=99.87 E-value=9.4e-22 Score=214.76 Aligned_cols=189 Identities=10% Similarity=-0.054 Sum_probs=169.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC------CCCCCCCCHHHHHHH--cCcHHHHHHH
Q 002763 543 LLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPN------SIDSDGNVPLWEAML--GGHENVIKLL 614 (883)
Q Consensus 543 ~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~------~~d~~g~tpL~~A~~--~g~~~iv~~L 614 (883)
-..++++.+|+++|..+.+| +||..+..+++++|+.+|+++| .++..++|+||.|+. .|+.++|++|
T Consensus 63 ~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~L 137 (437)
T PHA02795 63 VLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFM 137 (437)
T ss_pred HHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHH
Confidence 34678999999999998888 9999999999999999999999 788899999999999 8999999999
Q ss_pred HHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccC------CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 002763 615 MENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQR------NNGSTALHVAVCEDNVEIVRFLLDQKADVDKP 688 (883)
Q Consensus 615 l~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d------~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~ 688 (883)
+++||+++..+..+++|.|+..++.+++++|+++|++.+... ..|.||+|.|+..++.+++++|+++|||+|.+
T Consensus 138 I~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~k 217 (437)
T PHA02795 138 VDHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQL 217 (437)
T ss_pred HHCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcC
Confidence 999999999888899999999999999999999998543222 34789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHhhcccccccccccccCCCccccccccccc
Q 002763 689 DVHGWTPRDLADQQGHEEIKCIFQSCKETKAQSIISVAERPQQEVHYLGRFT 740 (883)
Q Consensus 689 d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (883)
|..|+||||+|+..|+.+++++|+++|+.- ......+.+++|++....
T Consensus 218 D~~G~TpLh~Aa~~g~~eiVelLL~~GAdI----N~~d~~G~TpLh~Aa~~g 265 (437)
T PHA02795 218 DAGGRTLLYRAIYAGYIDLVSWLLENGANV----NAVMSNGYTCLDVAVDRG 265 (437)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC----CCcCCCCCCHHHHHHHcC
Confidence 999999999999999999999999999874 444556677777775544
No 53
>PHA02792 ankyrin-like protein; Provisional
Probab=99.87 E-value=3.9e-21 Score=217.19 Aligned_cols=197 Identities=15% Similarity=0.071 Sum_probs=162.7
Q ss_pred HHHhcCCCCchhHHHHHHhcC-------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHh-------
Q 002763 520 NMLARGRMDLPLSLCFAALRG-------DDLLLHQLLKRGLDPNESDNNGRTALHIAASKG--SENCVLLLLD------- 583 (883)
Q Consensus 520 ~~~~~~~~~~~t~L~~Aa~~g-------~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g--~~~~v~~Ll~------- 583 (883)
.+++..+..|.||||+|+.++ +.++++.|+++|++++..|..|.||||+|+.+. ..|++++|+.
T Consensus 166 ~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~ 245 (631)
T PHA02792 166 YTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNE 245 (631)
T ss_pred cccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccc
Confidence 344445667899999999999 899999999999999999999999999999988 6666666544
Q ss_pred --------------------------------------------------------------------------------
Q 002763 584 -------------------------------------------------------------------------------- 583 (883)
Q Consensus 584 -------------------------------------------------------------------------------- 583 (883)
T Consensus 246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK 325 (631)
T PHA02792 246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK 325 (631)
T ss_pred hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence
Q ss_pred ----CCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcc----hhHHHHHHhCCH---HHHHHHHHcCCCc
Q 002763 584 ----YEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVG----HFACTAAEQNNL---ELLKEIVCYGGDV 652 (883)
Q Consensus 584 ----~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~----~~l~~a~~~~~~---~~~~~Ll~~g~~~ 652 (883)
+|++.+ ...+..+++.|+..|+.++|++|+++||+++..|.. +++|.|+..+.. ++++.|+++|+|+
T Consensus 326 ~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI 403 (631)
T PHA02792 326 CMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI 403 (631)
T ss_pred HHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc
Confidence 222221 112455788999999999999999999999877643 556666665554 4688899999999
Q ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH---cC-------CHHHHHHHhhccccc
Q 002763 653 TRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQ---QG-------HEEIKCIFQSCKETK 718 (883)
Q Consensus 653 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~---~~-------~~~i~~~L~~~~~~~ 718 (883)
|.+|..|.||||+|+..++.+++++|+++||+++.+|..|+||+|+|.. .+ ..+++++|+++++..
T Consensus 404 N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i 479 (631)
T PHA02792 404 NKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI 479 (631)
T ss_pred ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999975 22 246688888887654
No 54
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1.6e-21 Score=208.57 Aligned_cols=188 Identities=28% Similarity=0.379 Sum_probs=151.7
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHH
Q 002763 531 LSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENV 610 (883)
Q Consensus 531 t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~i 610 (883)
-.+.-|+..|+.+-+..|+..|+++|..+.+|.|+||-||.-.+.+||++|+++|+++|..|..|+||||.|+..||..+
T Consensus 42 a~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i 121 (527)
T KOG0505|consen 42 AVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI 121 (527)
T ss_pred HHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence 34667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCC--cch------------hHHHHH-HhC-C------------HHHHHHHHHcCCCccccCCCCChH
Q 002763 611 IKLLMENHADINSGD--VGH------------FACTAA-EQN-N------------LELLKEIVCYGGDVTRQRNNGSTA 662 (883)
Q Consensus 611 v~~Ll~~g~~~~~~~--~~~------------~l~~a~-~~~-~------------~~~~~~Ll~~g~~~~~~d~~g~T~ 662 (883)
+++|+.+|+++...+ ++. .+..+. ..| + ++=+...+..|.+.+..+..|.|+
T Consensus 122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~ 201 (527)
T KOG0505|consen 122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA 201 (527)
T ss_pred HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence 999999988754322 111 111111 111 1 111233345788888888789999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhccccc
Q 002763 663 LHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 663 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~ 718 (883)
||+|+.+|..+++++|+++|.+++.+|.+||||||.|+..|+.+++++|.++++..
T Consensus 202 lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~ 257 (527)
T KOG0505|consen 202 LHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADM 257 (527)
T ss_pred HHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999998888764
No 55
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.84 E-value=7.3e-21 Score=192.93 Aligned_cols=163 Identities=31% Similarity=0.433 Sum_probs=141.8
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcC-----cHHHHHHHHHcCCCCCC---CC
Q 002763 555 PNESDNNGRTALHIAASKGSENCVLLLLDYE-ADPNSIDSDGNVPLWEAMLGG-----HENVIKLLMENHADINS---GD 625 (883)
Q Consensus 555 ~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~g-----~~~iv~~Ll~~g~~~~~---~~ 625 (883)
+|..|.+|+|+||||++.++.++|+.||+.| |+++.+++-|+||+++|+... +.++|.-|.+.| ++|. +.
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~ 339 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH 339 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence 4667889999999999999999999999887 689999999999999887543 457888888765 4554 33
Q ss_pred cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCC
Q 002763 626 VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLD-QKADVDKPDVHGWTPRDLADQQGH 704 (883)
Q Consensus 626 ~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~Tpl~~A~~~~~ 704 (883)
+.+.+++|+..|+.++++.||.+|+|+|.+|.+|.|+|+.||.+||.|++++||. -++|+...|.+|-|+|.+|.+.||
T Consensus 340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh 419 (452)
T KOG0514|consen 340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH 419 (452)
T ss_pred cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence 6678899999999999999999999999999999999999999999999999997 589999999999999999999999
Q ss_pred HHHHHHHhhccccc
Q 002763 705 EEIKCIFQSCKETK 718 (883)
Q Consensus 705 ~~i~~~L~~~~~~~ 718 (883)
.+|.-+|-.+..-.
T Consensus 420 ~eIa~mlYa~~n~~ 433 (452)
T KOG0514|consen 420 REIAVMLYAHMNIK 433 (452)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999998776553
No 56
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3e-21 Score=205.64 Aligned_cols=264 Identities=18% Similarity=0.253 Sum_probs=171.7
Q ss_pred cccCCeEECCCChhHHHHHHHHHHHHHHHHHHhhhhhccccC---CCCCceehhhHhHHHHHHhhheeeeEEEEeCCeeE
Q 002763 50 VKLRRFIVSPYDRRYRVWETYLVLLVIYTAWASPFEFGFLRK---PQRPLSVIDNVVNGFFAVDIILTFFVAYLDKATYL 126 (883)
Q Consensus 50 ~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~---~~~~~~~i~~~~~~~F~~Di~l~f~~ay~~~~~~~ 126 (883)
.+++.+++.|.+.....+-++++++ |+.|+++.....+.+. ....++++|+++.+||.+|+++|++.|-.+.. |
T Consensus 79 ~~vYN~LERPrGWkaf~YH~~VFll-Vl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~r-Y- 155 (654)
T KOG1419|consen 79 NKVYNFLERPRGWKAFLYHFFVFLL-VLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCR-Y- 155 (654)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-c-
Confidence 4667899999987566666554444 4444444433333322 23558899999999999999999998732211 0
Q ss_pred EEeCHHHHHHHHhhhhh-HHHHHhccchhhhhhhCC-------CcchhhhHHHHHHHHHHHHHHHHHHhhhhccchhHHH
Q 002763 127 LVDCPKQIAWKYASSWL-VFDVISTIPSELAQKISP-------KPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFW 198 (883)
Q Consensus 127 ~v~~~~~i~~~Yl~~~f-~iDlis~iP~~~~~~~~~-------~~~~~~~~l~~lRl~Rl~r~~~~~~~l~~~~~~~~~~ 198 (883)
--+.=+.+|.+..| +||++.++....++.+.+ ...+.++++.++|++|+=|-....+.|... .+-..
T Consensus 156 ---rG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLGSv-V~aH~- 230 (654)
T KOG1419|consen 156 ---RGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLGSV-VYAHS- 230 (654)
T ss_pred ---ccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhhhh-hhhhH-
Confidence 00111456676666 999997776655544432 123455666666666655543333322221 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCccccccCCcccccchhHHHHHHHHHHhhhhhccccCCcccCCchhh
Q 002763 199 VRCCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREM 278 (883)
Q Consensus 199 ~~~~~l~~~~l~~~h~~aci~~~i~~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~ 278 (883)
..++....+.+++..+.+.+.|+.+.... +...+..+..|.+|+||+++|+|||||||.+|+|..|+
T Consensus 231 ~ELiTt~YIGFL~LIfsSflVYLaEKd~~-------------~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr 297 (654)
T KOG1419|consen 231 KELITTWYIGFLVLIFSSFLVYLAEKDAQ-------------GEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGR 297 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------------cccccccchhHHHHHHhhheeEEeeccCCcCcccchhH
Confidence 34555555666666777777787775322 22345667889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 002763 279 VFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQMLAHL 341 (883)
Q Consensus 279 i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~~~ 341 (883)
+++.++.++|+.+||.+-|++++-|.-.-+++. + -++|-++++.-..|.+-.=+||
T Consensus 298 ~laa~fsligiSFFALPAGILGSGfALKVQeq~--R-----QKHf~rrr~pAA~LIQc~WR~y 353 (654)
T KOG1419|consen 298 LLAACFSLIGISFFALPAGILGSGFALKVQEQH--R-----QKHFNRRRNPAASLIQCAWRYY 353 (654)
T ss_pred HHHHHHHHHHHHHHhcccccccchhhhhhHHHH--H-----HHHHHhhcchHHHHHHHHHHHH
Confidence 999999999999999999999987754322211 1 1345566666666666554443
No 57
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.84 E-value=1.5e-20 Score=228.75 Aligned_cols=189 Identities=22% Similarity=0.149 Sum_probs=152.9
Q ss_pred CCCCchhHHH-HHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCC------CC----C
Q 002763 525 GRMDLPLSLC-FAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASK---GSENCVLLLLDYEAD------PN----S 590 (883)
Q Consensus 525 ~~~~~~t~L~-~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~ga~------~~----~ 590 (883)
.+..|.|||| .|+..++.++++.|++.|+ .+..|.||||.|+.+ +...++..+...+.+ ++ .
T Consensus 48 ~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~ 123 (743)
T TIGR00870 48 PDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTS 123 (743)
T ss_pred cCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcccccc
Confidence 4456899999 8888889999999999887 678899999999873 233344444444422 11 1
Q ss_pred CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCC----------------cchhHHHHHHhCCHHHHHHHHHcCCCccc
Q 002763 591 IDSDGNVPLWEAMLGGHENVIKLLMENHADINSGD----------------VGHFACTAAEQNNLELLKEIVCYGGDVTR 654 (883)
Q Consensus 591 ~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~----------------~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~ 654 (883)
.+..|.||||.||..|+.++|++|+++|++++..+ +.++++.|+..|+.++++.|+++|+|++.
T Consensus 124 ~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~ 203 (743)
T TIGR00870 124 EFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILT 203 (743)
T ss_pred ccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhh
Confidence 23569999999999999999999999999998542 45788999999999999999999999999
Q ss_pred cCCCCChHHHHHHHcC---------CHHHHHHHHhCCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHhhcccc
Q 002763 655 QRNNGSTALHVAVCED---------NVEIVRFLLDQKADV-------DKPDVHGWTPRDLADQQGHEEIKCIFQSCKET 717 (883)
Q Consensus 655 ~d~~g~T~Lh~A~~~g---------~~~~v~~Ll~~ga~~-------~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~ 717 (883)
+|..|+||||+|+..+ ...+.+++++.+++. +..|.+|.||||+|+..|+.+++++|++.+..
T Consensus 204 ~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~ 282 (743)
T TIGR00870 204 ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYK 282 (743)
T ss_pred HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHh
Confidence 9999999999999987 234666777665554 66799999999999999999999999986654
No 58
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.84 E-value=1.8e-20 Score=228.12 Aligned_cols=210 Identities=22% Similarity=0.185 Sum_probs=167.6
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHc--CCCCCCCCCCCCcHHH-HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 002763 528 DLPLSLCFAALRGDDLLLHQLLKR--GLDPNESDNNGRTALH-IAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAML 604 (883)
Q Consensus 528 ~~~t~L~~Aa~~g~~~~v~~Ll~~--g~d~n~~d~~g~TpLh-~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~ 604 (883)
++..+++.|+..||.+.++.+++. +.++|..|..|+|||| .|+.+++.+++++|+++|+ ++..|.||||.|+.
T Consensus 16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~ 91 (743)
T TIGR00870 16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL 91 (743)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence 457889999999999999999998 8999999999999999 8888999999999999998 67789999999997
Q ss_pred cC---cHHHHHHHHHcCCC------CC------CCCcchhHHHHHHhCCHHHHHHHHHcCCCccccC-------------
Q 002763 605 GG---HENVIKLLMENHAD------IN------SGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQR------------- 656 (883)
Q Consensus 605 ~g---~~~iv~~Ll~~g~~------~~------~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d------------- 656 (883)
++ ...++.++.+.+.+ .+ ...+.+++|.|+..|+.++++.|+++|++++.++
T Consensus 92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~ 171 (743)
T TIGR00870 92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS 171 (743)
T ss_pred ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCc
Confidence 33 23444555554432 11 1246689999999999999999999999998653
Q ss_pred -CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC---------CHHHHHHHhhcccccccc---cc
Q 002763 657 -NNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQG---------HEEIKCIFQSCKETKAQS---II 723 (883)
Q Consensus 657 -~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~---------~~~i~~~L~~~~~~~~~~---~~ 723 (883)
.+|.||||.|+..|+.+++++|+++|||++.+|..|+||||+|+..+ ...+.+++++.++..... ..
T Consensus 172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~ 251 (743)
T TIGR00870 172 FYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEV 251 (743)
T ss_pred ccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhh
Confidence 35899999999999999999999999999999999999999999987 234666676665543211 12
Q ss_pred cccCCCcccccccccccC
Q 002763 724 SVAERPQQEVHYLGRFTS 741 (883)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~ 741 (883)
..+..+.++++.+.....
T Consensus 252 i~N~~g~TPL~~A~~~g~ 269 (743)
T TIGR00870 252 ILNHQGLTPLKLAAKEGR 269 (743)
T ss_pred hcCCCCCCchhhhhhcCC
Confidence 234455566665554443
No 59
>PHA02741 hypothetical protein; Provisional
Probab=99.83 E-value=4.3e-20 Score=181.88 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=117.3
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHh------CCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcch
Q 002763 555 PNESDNNGRTALHIAASKGSENCVLLLLD------YEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGH 628 (883)
Q Consensus 555 ~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~------~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~ 628 (883)
++.+|.+|.||||+||..|+.++++.|+. .|++++.+|..|.||||+|+..|+.+++
T Consensus 14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~----------------- 76 (169)
T PHA02741 14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLA----------------- 76 (169)
T ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHH-----------------
Confidence 45678899999999999999999999854 3689999999999999999999885332
Q ss_pred hHHHHHHhCCHHHHHHHHHcCCCccccCC-CCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHH
Q 002763 629 FACTAAEQNNLELLKEIVCYGGDVTRQRN-NGSTALHVAVCEDNVEIVRFLLD-QKADVDKPDVHGWTPRDLADQQGHEE 706 (883)
Q Consensus 629 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~Tpl~~A~~~~~~~ 706 (883)
.+++++|+++|+++|.+|. +|.||||+|+..++.+++++|+. .|++++..|..|+||||+|...++.+
T Consensus 77 ----------~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~ 146 (169)
T PHA02741 77 ----------AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVA 146 (169)
T ss_pred ----------HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHH
Confidence 1233445556667777775 89999999999999999999998 59999999999999999999999999
Q ss_pred HHHHHhhcccc
Q 002763 707 IKCIFQSCKET 717 (883)
Q Consensus 707 i~~~L~~~~~~ 717 (883)
++++|++.++.
T Consensus 147 iv~~L~~~~~~ 157 (169)
T PHA02741 147 MMQILREIVAT 157 (169)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 60
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-20 Score=207.54 Aligned_cols=186 Identities=27% Similarity=0.295 Sum_probs=98.3
Q ss_pred hhhhHHHHHhcCCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 002763 514 VLLETENMLARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDS 593 (883)
Q Consensus 514 ~l~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~ 593 (883)
++.+.+..++-.+..|.+|||+||-+||.++++.|+.++..+|.....|.||||.||+.||.+++.+|+.+|+|+-++|.
T Consensus 67 llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nn 146 (854)
T KOG0507|consen 67 LLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNN 146 (854)
T ss_pred HHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCc
Confidence 34444444444445555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCC----------CCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHH
Q 002763 594 DGNVPLWEAMLGGHENVIKLLMENHADIN----------SGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTAL 663 (883)
Q Consensus 594 ~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~----------~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~L 663 (883)
++.|||-.|++.|..++++.|++...... ......++|+|+++|+.++++.|++.|.|+|....+| |+|
T Consensus 147 s~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-tal 225 (854)
T KOG0507|consen 147 SKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TAL 225 (854)
T ss_pred ccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhh
Confidence 55555555555555555555554311110 0112234455555555555555555555555554443 555
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 002763 664 HVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLAD 700 (883)
Q Consensus 664 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~ 700 (883)
|.|+..|..++|++|++.|.+.+.+|.+|.|+|++-.
T Consensus 226 heaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~ 262 (854)
T KOG0507|consen 226 HEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIII 262 (854)
T ss_pred hhHhhcCcchhhhHHHhhccccccccccchHHHHHHH
Confidence 5555555555555555555555555555555555443
No 61
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=1.3e-20 Score=201.68 Aligned_cols=201 Identities=26% Similarity=0.286 Sum_probs=163.6
Q ss_pred hhhhhhHHHHHhcC------CCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 002763 512 EGVLLETENMLARG------RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYE 585 (883)
Q Consensus 512 ~~~l~~~~~~~~~~------~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g 585 (883)
.+...+.+.++..| +.||.|+||-+|...|.++|++|+++|+++|..|..||||||.|+..||..++++|+.+|
T Consensus 50 ~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~g 129 (527)
T KOG0505|consen 50 RGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHG 129 (527)
T ss_pred cccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhh
Confidence 34444445554433 568999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHcCcHH--------------------------HHHHHHHcCCCCCCCC--cchhHHHHHHhC
Q 002763 586 ADPNSIDSDGNVPLWEAMLGGHEN--------------------------VIKLLMENHADINSGD--VGHFACTAAEQN 637 (883)
Q Consensus 586 a~~~~~d~~g~tpL~~A~~~g~~~--------------------------iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~ 637 (883)
+++-..+.+|..|+-.|......+ =+...+..|...+..+ +++.+|.|+.+|
T Consensus 130 A~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~G 209 (527)
T KOG0505|consen 130 ANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANG 209 (527)
T ss_pred hhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhh
Confidence 998888888887775432211111 1122233666555433 678889999999
Q ss_pred CHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhh
Q 002763 638 NLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQS 713 (883)
Q Consensus 638 ~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~ 713 (883)
..++++.|+++|.+++.+|.+|+||||.|+..|..+++++|+++|++.+..+..|.||+++|...-- ....+...
T Consensus 210 y~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee~~-~l~eLe~k 284 (527)
T KOG0505|consen 210 YTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEEEL-YLLELELK 284 (527)
T ss_pred HHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhhhH-HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999875333 44344433
No 62
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.83 E-value=4.9e-20 Score=180.52 Aligned_cols=135 Identities=21% Similarity=0.184 Sum_probs=87.7
Q ss_pred chhHHHHHHhcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH---HHHHHhCCCCCCCCC-CCCCCHHH
Q 002763 529 LPLSLCFAALRGDD----LLLHQLLKRGLDPNESDNNGRTALHIAASKGSENC---VLLLLDYEADPNSID-SDGNVPLW 600 (883)
Q Consensus 529 ~~t~L~~Aa~~g~~----~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~---v~~Ll~~ga~~~~~d-~~g~tpL~ 600 (883)
+.+++|.||+.|+. ++++.|++.|.+++.+|.+|+||||+||..|+.+. +++|+++|+++|.+| ..|.||||
T Consensus 20 ~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh 99 (166)
T PHA02743 20 EQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLH 99 (166)
T ss_pred CCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHH
Confidence 34566666666665 34445555666666666666666666666665443 566666666666666 35666666
Q ss_pred HHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 002763 601 EAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLD 680 (883)
Q Consensus 601 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~ 680 (883)
+|+..|+.+++++|++ +.|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 100 ~A~~~g~~~iv~~Ll~------------------------------~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~ 149 (166)
T PHA02743 100 IAASTKNYELAEWLCR------------------------------QLGVNLGAINYQHETAYHIAYKMRDRRMMEILRA 149 (166)
T ss_pred HHHHhCCHHHHHHHHh------------------------------ccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665553 1244555566777777777777777777777777
Q ss_pred CCCCCCCCCCCCC
Q 002763 681 QKADVDKPDVHGW 693 (883)
Q Consensus 681 ~ga~~~~~d~~g~ 693 (883)
+|++++.++..|.
T Consensus 150 ~ga~~~~~~~~~~ 162 (166)
T PHA02743 150 NGAVCDDPLSIGL 162 (166)
T ss_pred cCCCCCCcccCCc
Confidence 7777777776664
No 63
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.82 E-value=1.7e-19 Score=190.12 Aligned_cols=150 Identities=21% Similarity=0.210 Sum_probs=125.9
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCCCCCCC----CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHH
Q 002763 529 LPLSLCFAALRGDDLLLHQLLKRGLDPNESD----NNGRTALHIAASKGSENCVLLLLDYEADPNSI-DSDGNVPLWEAM 603 (883)
Q Consensus 529 ~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d----~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpL~~A~ 603 (883)
-.++||.|+..|+.++++.|+++|+|+|.++ ..|.||||+|+..|+.+++++|+++|||+|.+ +..|.||||.|+
T Consensus 33 ~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa 112 (300)
T PHA02884 33 IANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISV 112 (300)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHH
Confidence 3567788888899999999999999999874 58999999999999999999999999999986 467999999999
Q ss_pred HcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCC
Q 002763 604 LGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKA 683 (883)
Q Consensus 604 ~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga 683 (883)
..++.+++++|+++|+ +++.+|.+|.||||+|+..++.+++..+. |+
T Consensus 113 ~~~~~eivklLL~~GA-------------------------------din~kd~~G~TpL~~A~~~~~~~~~~~~~--~~ 159 (300)
T PHA02884 113 LHGCLKCLEILLSYGA-------------------------------DINIQTNDMVTPIELALMICNNFLAFMIC--DN 159 (300)
T ss_pred HcCCHHHHHHHHHCCC-------------------------------CCCCCCCCCCCHHHHHHHhCChhHHHHhc--CC
Confidence 9998888888887655 55666789999999999999999886665 33
Q ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccc
Q 002763 684 DVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKET 717 (883)
Q Consensus 684 ~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~ 717 (883)
. .+..+.+|.+++ ++.+++++|.++..-
T Consensus 160 ~---~~~~~~~~~~~~---~n~ei~~~Lish~vl 187 (300)
T PHA02884 160 E---ISNFYKHPKKIL---INFDILKILVSHFIL 187 (300)
T ss_pred c---ccccccChhhhh---ccHHHHHHHHHHHHH
Confidence 3 356677888875 478999999998873
No 64
>PHA02741 hypothetical protein; Provisional
Probab=99.82 E-value=1.6e-19 Score=177.71 Aligned_cols=136 Identities=20% Similarity=0.231 Sum_probs=118.8
Q ss_pred HHhcCCCCchhHHHHHHhcCCHHHHHHHHH------cCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCC
Q 002763 521 MLARGRMDLPLSLCFAALRGDDLLLHQLLK------RGLDPNESDNNGRTALHIAASKGS----ENCVLLLLDYEADPNS 590 (883)
Q Consensus 521 ~~~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~------~g~d~n~~d~~g~TpLh~Aa~~g~----~~~v~~Ll~~ga~~~~ 590 (883)
.+...+.+|.|+||.|+..|+.++++.|+. .|++++.+|..|+||||+|+..|+ .+++++|+++|+++|.
T Consensus 13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~ 92 (169)
T PHA02741 13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA 92 (169)
T ss_pred HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC
Confidence 344556678999999999999999999864 368999999999999999999999 5889999999999999
Q ss_pred CCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHc
Q 002763 591 IDS-DGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCE 669 (883)
Q Consensus 591 ~d~-~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~ 669 (883)
+|. .|.||||+|+..++.+++++|++. .|++++..|.+|.||||+|+..
T Consensus 93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~------------------------------~g~~~~~~n~~g~tpL~~A~~~ 142 (169)
T PHA02741 93 QEMLEGDTALHLAAHRRDHDLAEWLCCQ------------------------------PGIDLHFCNADNKSPFELAIDN 142 (169)
T ss_pred CCcCCCCCHHHHHHHcCCHHHHHHHHhC------------------------------CCCCCCcCCCCCCCHHHHHHHC
Confidence 985 899999999999999999988863 2345566778999999999999
Q ss_pred CCHHHHHHHHhCCCCCC
Q 002763 670 DNVEIVRFLLDQKADVD 686 (883)
Q Consensus 670 g~~~~v~~Ll~~ga~~~ 686 (883)
|+.+++++|++.++...
T Consensus 143 ~~~~iv~~L~~~~~~~~ 159 (169)
T PHA02741 143 EDVAMMQILREIVATSR 159 (169)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999876643
No 65
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.81 E-value=1e-19 Score=200.86 Aligned_cols=192 Identities=22% Similarity=0.194 Sum_probs=174.8
Q ss_pred CCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 002763 525 GRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAML 604 (883)
Q Consensus 525 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~ 604 (883)
.+++|-|+||.|+.+|+.++++.|+++.+-++..|..|.+|||+||+.|+.+++++|+.++..+|+.+-.|.||||.|+.
T Consensus 45 qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaq 124 (854)
T KOG0507|consen 45 QDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQ 124 (854)
T ss_pred cCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhh
Confidence 35688999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCc--------cccCCCCChHHHHHHHcCCHHH
Q 002763 605 GGHENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDV--------TRQRNNGSTALHVAVCEDNVEI 674 (883)
Q Consensus 605 ~g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~--------~~~d~~g~T~Lh~A~~~g~~~~ 674 (883)
.||.+++.+|+.+|+++-..+ .++++.+|++-|..++++.|+....++ ..++-.+.+|||.|+++||.++
T Consensus 125 hgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~ 204 (854)
T KOG0507|consen 125 HGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVEC 204 (854)
T ss_pred hcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHH
Confidence 999999999999999987665 456778899999999999999774321 2345578899999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccc
Q 002763 675 VRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKET 717 (883)
Q Consensus 675 v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~ 717 (883)
++.|+++|.|+|.....| |+||.|+..|..+++..|++.|-.
T Consensus 205 ~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin 246 (854)
T KOG0507|consen 205 MQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGIN 246 (854)
T ss_pred HHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccc
Confidence 999999999999987777 999999999999999999988765
No 66
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.81 E-value=2.3e-20 Score=176.58 Aligned_cols=167 Identities=25% Similarity=0.274 Sum_probs=150.6
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCc
Q 002763 528 DLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGH 607 (883)
Q Consensus 528 ~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~ 607 (883)
-+.+|+.+++.+.+.+.+..+.++ -+|..|+.|.|||.+|+..|+.++|++||+.||||++..+...|+|.+|++.|.
T Consensus 128 ~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggy 205 (296)
T KOG0502|consen 128 MPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGY 205 (296)
T ss_pred ccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCCh
Confidence 457888889888877766665554 588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCC
Q 002763 608 ENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADV 685 (883)
Q Consensus 608 ~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~ 685 (883)
.++|++|++++.++|..| +++++.+|+..|+.++++.|+..|+|++..|..|++++..|+..|+. +|+..+++-++.
T Consensus 206 tdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lk 284 (296)
T KOG0502|consen 206 TDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALK 284 (296)
T ss_pred HHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHH
Confidence 999999999999998655 77888999999999999999999999999999999999999999998 999999999999
Q ss_pred CCCCCCCCCHHH
Q 002763 686 DKPDVHGWTPRD 697 (883)
Q Consensus 686 ~~~d~~g~Tpl~ 697 (883)
+.+|..-.||+|
T Consensus 285 l~Q~~~~~~~~~ 296 (296)
T KOG0502|consen 285 LCQDSEKRTPLH 296 (296)
T ss_pred HhhcccCCCCCC
Confidence 999988888875
No 67
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.80 E-value=9.8e-19 Score=159.65 Aligned_cols=143 Identities=26% Similarity=0.232 Sum_probs=124.7
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcH
Q 002763 530 PLSLCFAALRGDDLLLHQLLKRGLD-PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHE 608 (883)
Q Consensus 530 ~t~L~~Aa~~g~~~~v~~Ll~~g~d-~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~ 608 (883)
.-.+.+|+..+....|+.||+..++ +|.+|.+|.||||-|+.+||.++|+.|+..||+++.+...|+||||-||.-.+.
T Consensus 64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~ 143 (228)
T KOG0512|consen 64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF 143 (228)
T ss_pred HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccch
Confidence 3457889999999999999998876 899999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHH-HHHHHH-hCCCCCC
Q 002763 609 NVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVE-IVRFLL-DQKADVD 686 (883)
Q Consensus 609 ~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~-~v~~Ll-~~ga~~~ 686 (883)
+++..|+++|+++ |+......||||+||...+.. .+++|+ ..+.++-
T Consensus 144 ~va~~LLqhgaDV-------------------------------nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg 192 (228)
T KOG0512|consen 144 EVAGRLLQHGADV-------------------------------NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG 192 (228)
T ss_pred hHHHHHHhccCcc-------------------------------cccccccchhhHHhhcccchHHHHHHHhhccccChh
Confidence 8888888776655 445556789999999887755 455555 4788999
Q ss_pred CCCCCCCCHHHHHHHcC
Q 002763 687 KPDVHGWTPRDLADQQG 703 (883)
Q Consensus 687 ~~d~~g~Tpl~~A~~~~ 703 (883)
.++..+.||+++|.+.+
T Consensus 193 ~~nn~eeta~~iARRT~ 209 (228)
T KOG0512|consen 193 LKNNLEETAFDIARRTS 209 (228)
T ss_pred hhcCccchHHHHHHHhh
Confidence 99999999999998765
No 68
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.79 E-value=4.6e-19 Score=172.01 Aligned_cols=133 Identities=22% Similarity=0.258 Sum_probs=105.6
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC--C-----CCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcc
Q 002763 555 PNESDNNGRTALHIAASKGSENCVLLLLDYEA--D-----PNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVG 627 (883)
Q Consensus 555 ~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga--~-----~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~ 627 (883)
++..|.+|.||||+||..|+ ++.++...+. + ++.+|..|.||||+|+..|+.+.+
T Consensus 10 ~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~---------------- 71 (154)
T PHA02736 10 ASEPDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQ---------------- 71 (154)
T ss_pred HHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHH----------------
Confidence 46678899999999999998 3444443332 2 334688999999999988876432
Q ss_pred hhHHHHHHhCCHHHHHHHHHcCCCccccC-CCCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCH
Q 002763 628 HFACTAAEQNNLELLKEIVCYGGDVTRQR-NNGSTALHVAVCEDNVEIVRFLLD-QKADVDKPDVHGWTPRDLADQQGHE 705 (883)
Q Consensus 628 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~Tpl~~A~~~~~~ 705 (883)
++++.|+++|++++.+| ..|.||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+..|+.
T Consensus 72 ------------e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~ 139 (154)
T PHA02736 72 ------------EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDA 139 (154)
T ss_pred ------------HHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCH
Confidence 12233444566667776 489999999999999999999997 5999999999999999999999999
Q ss_pred HHHHHHhhcccc
Q 002763 706 EIKCIFQSCKET 717 (883)
Q Consensus 706 ~i~~~L~~~~~~ 717 (883)
+++++|+++++.
T Consensus 140 ~i~~~Ll~~ga~ 151 (154)
T PHA02736 140 KMMNILRAKGAQ 151 (154)
T ss_pred HHHHHHHHcCCC
Confidence 999999998875
No 69
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.78 E-value=8.1e-19 Score=170.29 Aligned_cols=133 Identities=19% Similarity=0.195 Sum_probs=108.6
Q ss_pred cCCCCchhHHHHHHhcCCHHHHHHHHHcCCC-----CCCCCCCCCcHHHHHHHcCCH---HHHHHHHhCCCCCCCCC-CC
Q 002763 524 RGRMDLPLSLCFAALRGDDLLLHQLLKRGLD-----PNESDNNGRTALHIAASKGSE---NCVLLLLDYEADPNSID-SD 594 (883)
Q Consensus 524 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d-----~n~~d~~g~TpLh~Aa~~g~~---~~v~~Ll~~ga~~~~~d-~~ 594 (883)
..+.+|.||||+|+..|+...+........+ ++..|.+|.||||+||..|+. +++++|+++|+++|.+| ..
T Consensus 12 ~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~ 91 (154)
T PHA02736 12 EPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVF 91 (154)
T ss_pred hcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCC
Confidence 3456789999999999984322222222222 345789999999999999987 46899999999999998 59
Q ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHH
Q 002763 595 GNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEI 674 (883)
Q Consensus 595 g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~ 674 (883)
|.||||+|+..|+.+++++|+.+ .|++++.+|..|.||||+|+..|+.++
T Consensus 92 g~T~Lh~A~~~~~~~i~~~Ll~~------------------------------~g~d~n~~~~~g~tpL~~A~~~~~~~i 141 (154)
T PHA02736 92 GNTPLHIAVYTQNYELATWLCNQ------------------------------PGVNMEILNYAFKTPYYVACERHDAKM 141 (154)
T ss_pred CCcHHHHHHHhCCHHHHHHHHhC------------------------------CCCCCccccCCCCCHHHHHHHcCCHHH
Confidence 99999999999999998888863 244666777899999999999999999
Q ss_pred HHHHHhCCCCCC
Q 002763 675 VRFLLDQKADVD 686 (883)
Q Consensus 675 v~~Ll~~ga~~~ 686 (883)
+++|+++||+.+
T Consensus 142 ~~~Ll~~ga~~~ 153 (154)
T PHA02736 142 MNILRAKGAQCK 153 (154)
T ss_pred HHHHHHcCCCCC
Confidence 999999999875
No 70
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.78 E-value=2.9e-18 Score=180.76 Aligned_cols=129 Identities=19% Similarity=0.167 Sum_probs=110.7
Q ss_pred CCCCCCCCCcHH-HHHHHcCCHHHHHHHHhCCCCCCCCC----CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcchh
Q 002763 555 PNESDNNGRTAL-HIAASKGSENCVLLLLDYEADPNSID----SDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHF 629 (883)
Q Consensus 555 ~n~~d~~g~TpL-h~Aa~~g~~~~v~~Ll~~ga~~~~~d----~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~ 629 (883)
+..+|.+|+|++ |.|+..|+.+++++|+++|+|+|.++ ..|.||||+|+..++.+++++|+++|++++..+
T Consensus 25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~---- 100 (300)
T PHA02884 25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYA---- 100 (300)
T ss_pred hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCccc----
Confidence 345788888765 55566689999999999999999974 589999999999999999988888766554321
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 002763 630 ACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKC 709 (883)
Q Consensus 630 l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~ 709 (883)
+..|.||||+|+..|+.+++++|+++||+++.+|..|+||+|+|+..++.+++.
T Consensus 101 --------------------------~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~ 154 (300)
T PHA02884 101 --------------------------EEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAF 154 (300)
T ss_pred --------------------------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHH
Confidence 347999999999999999999999999999999999999999999999988887
Q ss_pred HHhh
Q 002763 710 IFQS 713 (883)
Q Consensus 710 ~L~~ 713 (883)
++..
T Consensus 155 ~~~~ 158 (300)
T PHA02884 155 MICD 158 (300)
T ss_pred HhcC
Confidence 7654
No 71
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.77 E-value=6.5e-19 Score=178.92 Aligned_cols=130 Identities=28% Similarity=0.369 Sum_probs=112.0
Q ss_pred CCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC-CCCCCCcc--hhHHHHHH-----hCCHHHHHHHHHcCCCccccC-CC
Q 002763 588 PNSIDSDGNVPLWEAMLGGHENVIKLLMENHA-DINSGDVG--HFACTAAE-----QNNLELLKEIVCYGGDVTRQR-NN 658 (883)
Q Consensus 588 ~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~-~~~~~~~~--~~l~~a~~-----~~~~~~~~~Ll~~g~~~~~~d-~~ 658 (883)
+|+-|.+|+|+||+|+.+++.++|+.|++.|. +++.++.. ++.++++. ..+..++..|.+.| |+|.+- ..
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~ 339 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH 339 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence 37789999999999999999999999999884 67766644 44455443 24677888888775 788774 58
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhccccc
Q 002763 659 GSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 659 g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~ 718 (883)
|.|+|++|+.+|+.++|+.||..|||+|.+|.+|-|+|+.|+++||.+|+++|+.....+
T Consensus 340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd 399 (452)
T KOG0514|consen 340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD 399 (452)
T ss_pred cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc
Confidence 999999999999999999999999999999999999999999999999999999887664
No 72
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.77 E-value=4.9e-18 Score=166.41 Aligned_cols=108 Identities=19% Similarity=0.142 Sum_probs=96.7
Q ss_pred HHHHhcCCCCchhHHHHHHhcCCHHH---HHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCC
Q 002763 519 ENMLARGRMDLPLSLCFAALRGDDLL---LHQLLKRGLDPNESD-NNGRTALHIAASKGSENCVLLLLD-YEADPNSIDS 593 (883)
Q Consensus 519 ~~~~~~~~~~~~t~L~~Aa~~g~~~~---v~~Ll~~g~d~n~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~-~ga~~~~~d~ 593 (883)
+..+...+.+|.||||+|+..|+.+. +++|++.|+++|.+| ..|.||||+|+..|+.+++++|++ .|++++.+|.
T Consensus 47 g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~ 126 (166)
T PHA02743 47 GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINY 126 (166)
T ss_pred chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCC
Confidence 33444456689999999999988654 899999999999998 589999999999999999999995 7999999999
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCc
Q 002763 594 DGNVPLWEAMLGGHENVIKLLMENHADINSGDV 626 (883)
Q Consensus 594 ~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~ 626 (883)
.|.||||+|+..++.+++++|+++|++++.++.
T Consensus 127 ~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~ 159 (166)
T PHA02743 127 QHETAYHIAYKMRDRRMMEILRANGAVCDDPLS 159 (166)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence 999999999999999999999999998887664
No 73
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.72 E-value=1.6e-17 Score=163.19 Aligned_cols=148 Identities=27% Similarity=0.320 Sum_probs=107.8
Q ss_pred HhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Q 002763 537 ALRGDDLLLHQLLKR-GLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615 (883)
Q Consensus 537 a~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll 615 (883)
|+.||.-.|+.-++. --|.|..|..|-+|||+||..|+..+|+.|+..|+.+|..+....||||+|+..||-++|+.|+
T Consensus 8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll 87 (448)
T KOG0195|consen 8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL 87 (448)
T ss_pred hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence 445555555554543 3467777888888888888888888888888888888888877788888888888877777776
Q ss_pred HcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH
Q 002763 616 ENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTP 695 (883)
Q Consensus 616 ~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tp 695 (883)
+. .+|+|+.+.+|+||||+||.-|...+++-|+..||-++.-|+.|.||
T Consensus 88 ~~-------------------------------kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tp 136 (448)
T KOG0195|consen 88 SR-------------------------------KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTP 136 (448)
T ss_pred HH-------------------------------hcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCc
Confidence 64 34566677788888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHhhcc
Q 002763 696 RDLADQQGHEEIKCIFQSCK 715 (883)
Q Consensus 696 l~~A~~~~~~~i~~~L~~~~ 715 (883)
++-|.-.-...+.++-.++|
T Consensus 137 ldkakp~l~~~l~e~aek~g 156 (448)
T KOG0195|consen 137 LDKAKPMLKNTLLEIAEKHG 156 (448)
T ss_pred hhhhchHHHHHHHHHHHHhC
Confidence 88765433333333333343
No 74
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.71 E-value=1.8e-17 Score=162.94 Aligned_cols=134 Identities=29% Similarity=0.317 Sum_probs=119.0
Q ss_pred hcccCCcchhhhhhhHHHHHhcCCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 002763 503 LKDLKDPIMEGVLLETENMLARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLL 582 (883)
Q Consensus 503 lk~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll 582 (883)
.++.+.-...-.+.+.+..++.|+..|.+|||+||..|+..+++.|+.+|+.+|..+.-..||||+||+.||.++|+.|+
T Consensus 8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll 87 (448)
T KOG0195|consen 8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL 87 (448)
T ss_pred hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence 34455555566778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChH
Q 002763 583 DYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTA 662 (883)
Q Consensus 583 ~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~ 662 (883)
+..+|+|+.+..|+||||+||.-|...+++-|+.+|+. ++..+++|.||
T Consensus 88 ~~kadvnavnehgntplhyacfwgydqiaedli~~ga~-------------------------------v~icnk~g~tp 136 (448)
T KOG0195|consen 88 SRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAA-------------------------------VNICNKKGMTP 136 (448)
T ss_pred HHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccce-------------------------------eeecccCCCCc
Confidence 99999999999999999999999999999888876654 45556788899
Q ss_pred HHHHH
Q 002763 663 LHVAV 667 (883)
Q Consensus 663 Lh~A~ 667 (883)
|..|-
T Consensus 137 ldkak 141 (448)
T KOG0195|consen 137 LDKAK 141 (448)
T ss_pred hhhhc
Confidence 87763
No 75
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.69 E-value=1.9e-16 Score=138.18 Aligned_cols=89 Identities=44% Similarity=0.557 Sum_probs=83.0
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHH
Q 002763 533 LCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIK 612 (883)
Q Consensus 533 L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~ 612 (883)
||.|+..|+.++++.|++.+.+++. |+||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 76 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK 76 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence 7999999999999999999988887 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCC
Q 002763 613 LLMENHADINSGD 625 (883)
Q Consensus 613 ~Ll~~g~~~~~~~ 625 (883)
+|+++|++++..|
T Consensus 77 ~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 77 LLLEHGADVNIRN 89 (89)
T ss_dssp HHHHTTT-TTSS-
T ss_pred HHHHcCCCCCCcC
Confidence 9999999988654
No 76
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.68 E-value=1.6e-16 Score=145.25 Aligned_cols=132 Identities=24% Similarity=0.180 Sum_probs=112.9
Q ss_pred cchhhhhhhHHHHHhcCCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 002763 509 PIMEGVLLETENMLARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADP 588 (883)
Q Consensus 509 ~~~~~~l~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~ 588 (883)
..++.++.+..+.++..+.|+.||||-|+.+|+.++++.|+..|++++.+...||||||-||..++.+|+-.||++|+|+
T Consensus 77 ~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDV 156 (228)
T KOG0512|consen 77 TEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADV 156 (228)
T ss_pred HHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcc
Confidence 44566777777788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHcCcH-HHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHH
Q 002763 589 NSIDSDGNVPLWEAMLGGHE-NVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAV 667 (883)
Q Consensus 589 ~~~d~~g~tpL~~A~~~g~~-~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~ 667 (883)
|+......||||.||...+. ..+++|+. ..++++-.++..+.||+.+|-
T Consensus 157 nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~------------------------------dryi~pg~~nn~eeta~~iAR 206 (228)
T KOG0512|consen 157 NAQTKGLLTPLHLAAGNRNSRDTLELLLH------------------------------DRYIHPGLKNNLEETAFDIAR 206 (228)
T ss_pred cccccccchhhHHhhcccchHHHHHHHhh------------------------------ccccChhhhcCccchHHHHHH
Confidence 99999999999999987654 34444443 234556666778889999987
Q ss_pred HcC
Q 002763 668 CED 670 (883)
Q Consensus 668 ~~g 670 (883)
+-+
T Consensus 207 RT~ 209 (228)
T KOG0512|consen 207 RTS 209 (228)
T ss_pred Hhh
Confidence 765
No 77
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.68 E-value=2.6e-16 Score=176.96 Aligned_cols=185 Identities=26% Similarity=0.274 Sum_probs=153.1
Q ss_pred hHHHHHHhcCCHHHHHHHHHcC---------CCCCCCCCCCCcHHHHHHH---cCCHHHHHHHHhCCC----CCCC-CCC
Q 002763 531 LSLCFAALRGDDLLLHQLLKRG---------LDPNESDNNGRTALHIAAS---KGSENCVLLLLDYEA----DPNS-IDS 593 (883)
Q Consensus 531 t~L~~Aa~~g~~~~v~~Ll~~g---------~d~n~~d~~g~TpLh~Aa~---~g~~~~v~~Ll~~ga----~~~~-~d~ 593 (883)
.++..|...|..+.+..|++.+ .+++.+...|.|.||.|.- .++-++++.|++.-. |+-. ..-
T Consensus 103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY 182 (782)
T KOG3676|consen 103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY 182 (782)
T ss_pred hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence 4566777777777777777654 6778888888999998876 456688888887522 1111 134
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCC-------------------------cchhHHHHHHhCCHHHHHHHHHc
Q 002763 594 DGNVPLWEAMLGGHENVIKLLMENHADINSGD-------------------------VGHFACTAAEQNNLELLKEIVCY 648 (883)
Q Consensus 594 ~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~-------------------------~~~~l~~a~~~~~~~~~~~Ll~~ 648 (883)
.|.||||.|+.+.+.++|++|++.|||++.+- +..|+..||..++.+++++|+++
T Consensus 183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~ 262 (782)
T KOG3676|consen 183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH 262 (782)
T ss_pred cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence 58899999999999999999999998887521 12466789999999999999999
Q ss_pred CCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHhhcc
Q 002763 649 GGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD--VDKPDVHGWTPRDLADQQGHEEIKCIFQSCK 715 (883)
Q Consensus 649 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~ 715 (883)
|+|++++|..|+|.||+.+..-..+|-.++|++||+ ...+|..|.|||.+|+..|..++.+.+++..
T Consensus 263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~ 331 (782)
T KOG3676|consen 263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERR 331 (782)
T ss_pred CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999 8999999999999999999999999999884
No 78
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.66 E-value=8.1e-17 Score=182.17 Aligned_cols=213 Identities=23% Similarity=0.234 Sum_probs=154.9
Q ss_pred chhhhhhhHHHHHhcCCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 002763 510 IMEGVLLETENMLARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPN 589 (883)
Q Consensus 510 ~~~~~l~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~ 589 (883)
.+..++.....+-++.+..+.|+|.+||..|..++++.||.+|++-..++-...|||.+|...|+.+++++|+.+|+.+|
T Consensus 805 vV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseIn 884 (2131)
T KOG4369|consen 805 VVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEIN 884 (2131)
T ss_pred HHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccc
Confidence 34444444444445555566777777777777777777777777777777777778887777777888888887777777
Q ss_pred CCC--CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCC---CcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHH
Q 002763 590 SID--SDGNVPLWEAMLGGHENVIKLLMENHADINSG---DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALH 664 (883)
Q Consensus 590 ~~d--~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~---~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh 664 (883)
.+. +.|-.||.+|..+||...++.|++.|.++|.. +.++.+-+|+..|..+++..||.+.+++..+.+.|-|||+
T Consensus 885 SrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplm 964 (2131)
T KOG4369|consen 885 SRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLM 964 (2131)
T ss_pred cccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccc
Confidence 663 45777888888888888888888877777743 3455666677777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHhCCCC-----------------------------------CCCCCCCCCCHHHHHHHcCCHHHHH
Q 002763 665 VAVCEDNVEIVRFLLDQKAD-----------------------------------VDKPDVHGWTPRDLADQQGHEEIKC 709 (883)
Q Consensus 665 ~A~~~g~~~~v~~Ll~~ga~-----------------------------------~~~~d~~g~Tpl~~A~~~~~~~i~~ 709 (883)
-++..|.+|+=++|+.+||| +..+|.+|+|+|.+|+..|+...+.
T Consensus 965 e~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~ 1044 (2131)
T KOG4369|consen 965 EMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCP 1044 (2131)
T ss_pred hhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccch
Confidence 77766666666666666665 4445888999999999999999999
Q ss_pred HHhhccccccccc
Q 002763 710 IFQSCKETKAQSI 722 (883)
Q Consensus 710 ~L~~~~~~~~~~~ 722 (883)
+|.++.++.....
T Consensus 1045 il~~~~ad~d~qd 1057 (2131)
T KOG4369|consen 1045 ILVSSVADADQQD 1057 (2131)
T ss_pred HHhhcccChhhhh
Confidence 9999888755433
No 79
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.64 E-value=4.5e-15 Score=137.99 Aligned_cols=125 Identities=42% Similarity=0.655 Sum_probs=101.9
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHh
Q 002763 557 ESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQ 636 (883)
Q Consensus 557 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~ 636 (883)
..|.+|.||||.|+..|+.++++.|+++|++.+.++..|.||||.|+..++.+++++|++.|+
T Consensus 2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~----------------- 64 (126)
T cd00204 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA----------------- 64 (126)
T ss_pred CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-----------------
Confidence 345778888888888888888888888888888888888888888888888877777777654
Q ss_pred CCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHh
Q 002763 637 NNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQ 712 (883)
Q Consensus 637 ~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~ 712 (883)
+++..+..|.||+|.|+..++.+++++|+++|.+++..|..|.||+++|...++.+++++|+
T Consensus 65 --------------~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 65 --------------DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred --------------CccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 33445567788888888888888888888888888888888888888888888888888764
No 80
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.63 E-value=2.2e-16 Score=178.73 Aligned_cols=188 Identities=22% Similarity=0.278 Sum_probs=96.6
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCcH
Q 002763 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSI-DSDGNVPLWEAMLGGHE 608 (883)
Q Consensus 530 ~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpL~~A~~~g~~ 608 (883)
.|+|-.||+.|+-+.++.|+.+|+++..+|+.|.+||.+|+-.||..+|+.|+++-++++.+ |+.+.|+|.+||..|+.
T Consensus 758 ~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~ 837 (2131)
T KOG4369|consen 758 KTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRT 837 (2131)
T ss_pred cccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcc
Confidence 45555555555555555555555555555555555555555555555555555555555433 44455555555555555
Q ss_pred HHHHHHHHcCCCCCCCCc--chhHHHHHHhCCHHHHHHHHHcCCCccccC--CCCChHHHHHHH----------------
Q 002763 609 NVIKLLMENHADINSGDV--GHFACTAAEQNNLELLKEIVCYGGDVTRQR--NNGSTALHVAVC---------------- 668 (883)
Q Consensus 609 ~iv~~Ll~~g~~~~~~~~--~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d--~~g~T~Lh~A~~---------------- 668 (883)
++|++|+.+|++-..++. .+++.+|...|..+++..|+.+|.++|.+. +.|-.||++|..
T Consensus 838 ~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsd 917 (2131)
T KOG4369|consen 838 RVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSD 917 (2131)
T ss_pred hHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccch
Confidence 555555555544333322 233344444444455555555554444332 234444555444
Q ss_pred ------------------cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccc
Q 002763 669 ------------------EDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKET 717 (883)
Q Consensus 669 ------------------~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~ 717 (883)
.|..+++.+||.+.+++..+-..|.|||.-++..|..++-++|+..|++
T Consensus 918 iNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad 984 (2131)
T KOG4369|consen 918 INAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD 984 (2131)
T ss_pred hccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccc
Confidence 4555555555555555544455555555555555555555555555554
No 81
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.62 E-value=2.2e-15 Score=131.37 Aligned_cols=89 Identities=45% Similarity=0.622 Sum_probs=75.5
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHH
Q 002763 566 LHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEI 645 (883)
Q Consensus 566 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~L 645 (883)
||+||..|+.+++++|++.|++++. |+||||+|+..|+.+++++|++.|+
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~-------------------------- 50 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGA-------------------------- 50 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTT--------------------------
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcc--------------------------
Confidence 7899999999999999998888876 8889999988888888888887554
Q ss_pred HHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 002763 646 VCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPD 689 (883)
Q Consensus 646 l~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d 689 (883)
+++.+|.+|.||||+|+..|+.+++++|+++|++++.+|
T Consensus 51 -----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 51 -----DINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp -----CTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred -----cccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 556667899999999999999999999999999999875
No 82
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.58 E-value=3.3e-14 Score=132.09 Aligned_cols=122 Identities=41% Similarity=0.583 Sum_probs=112.7
Q ss_pred CCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q 002763 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGG 606 (883)
Q Consensus 527 ~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g 606 (883)
.+|.||||.|+..|+.++++.|++.|.+.+..|..|.||||.|+..++.+++++|+++|++++..+..|.||+|+|+..+
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~ 84 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG 84 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHH
Q 002763 607 HENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLL 679 (883)
Q Consensus 607 ~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll 679 (883)
+.+++++|++.+ .+++..|..|.||+|.|...++.+++++|+
T Consensus 85 ~~~~~~~L~~~~-------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 85 NLDVVKLLLKHG-------------------------------ADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred cHHHHHHHHHcC-------------------------------CCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 999998888865 345566788999999999999999999885
No 83
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.54 E-value=1.1e-13 Score=156.08 Aligned_cols=177 Identities=24% Similarity=0.221 Sum_probs=143.5
Q ss_pred CCCchhHHHHHHh---cCCHHHHHHHHHcCCC-CC----CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC------
Q 002763 526 RMDLPLSLCFAAL---RGDDLLLHQLLKRGLD-PN----ESDNNGRTALHIAASKGSENCVLLLLDYEADPNSI------ 591 (883)
Q Consensus 526 ~~~~~t~L~~Aa~---~g~~~~v~~Ll~~g~d-~n----~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~------ 591 (883)
..-|.|.||.|.. .++.++++.|++.-.. +| .-...|.||||+|+.+.+.++|++|++.|||++.+
T Consensus 140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF 219 (782)
T KOG3676|consen 140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFF 219 (782)
T ss_pred cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcccc
Confidence 3458899999976 3456889999985321 22 22457999999999999999999999999998865
Q ss_pred ---CC--------------CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCC--cchhHHHHHHhCCHHHHHHHHHcCCC-
Q 002763 592 ---DS--------------DGNVPLWEAMLGGHENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGD- 651 (883)
Q Consensus 592 ---d~--------------~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~--~~~~l~~a~~~~~~~~~~~Ll~~g~~- 651 (883)
|. .|..||.+||..++++++++|+++|||++.+| +++.+|..+..-..++...++++|++
T Consensus 220 ~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~ 299 (782)
T KOG3676|consen 220 CPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA 299 (782)
T ss_pred CcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 21 26789999999999999999999999999888 55677888888888999999999999
Q ss_pred -ccccCCCCChHHHHHHHcCCHHHHHHHHhC-C-------------CCCCCCCC--CCCCHHHHHHHc
Q 002763 652 -VTRQRNNGSTALHVAVCEDNVEIVRFLLDQ-K-------------ADVDKPDV--HGWTPRDLADQQ 702 (883)
Q Consensus 652 -~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g-------------a~~~~~d~--~g~Tpl~~A~~~ 702 (883)
...+|++|-|||.+||..|+.+|.+.+++. + -+.+..|. +.+++|.+.+..
T Consensus 300 l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg 367 (782)
T KOG3676|consen 300 LEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG 367 (782)
T ss_pred cccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC
Confidence 888999999999999999999999999987 2 23444453 345666666544
No 84
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.54 E-value=4.9e-14 Score=147.25 Aligned_cols=130 Identities=16% Similarity=0.205 Sum_probs=121.3
Q ss_pred HhHhhhccccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCeeehhh
Q 002763 375 YSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIG 454 (883)
Q Consensus 375 ~~~l~~~~lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fGe~~ 454 (883)
.++++..++|.+++++.+..|....+.+.|++||.|+.+|+.++.+|+|.+|.|+++...+|++..+..+.+|++||+.+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~ 85 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAA 85 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHH
Confidence 35788999999999999999999999999999999999999999999999999999987777788899999999999999
Q ss_pred hhcCCCceeEEEEccceeEEeechhhHHHHHhhcccchHHHHHHHHhhhc
Q 002763 455 VLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLK 504 (883)
Q Consensus 455 ll~~~p~~~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~lk 504 (883)
++.+.|+.++++|.++|+++++++++|.+++.++|.....++..+.+.+.
T Consensus 86 ~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~ 135 (236)
T PRK09392 86 VVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYR 135 (236)
T ss_pred HhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888877766543
No 85
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.52 E-value=4.1e-14 Score=115.78 Aligned_cols=94 Identities=32% Similarity=0.439 Sum_probs=86.6
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHH
Q 002763 531 LSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENV 610 (883)
Q Consensus 531 t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~i 610 (883)
....++..+|..+-|+.....|.|+|..- .|+||||+||-.|..+++++|+..||+++.+|+.|-|||..|+..||.++
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c 82 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC 82 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence 34678899999999999999999999765 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCC
Q 002763 611 IKLLMENHADINSGD 625 (883)
Q Consensus 611 v~~Ll~~g~~~~~~~ 625 (883)
|++|++.|++-....
T Consensus 83 VklLL~~GAdrt~~~ 97 (117)
T KOG4214|consen 83 VKLLLQNGADRTIHA 97 (117)
T ss_pred HHHHHHcCcccceeC
Confidence 999999998765433
No 86
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.52 E-value=1.6e-14 Score=146.54 Aligned_cols=188 Identities=24% Similarity=0.383 Sum_probs=127.5
Q ss_pred ehhhHhHHHHHHhhheeeeEEEEeCCeeEEEeCHHHHHHHHhhhh-hHHHHHhccchhhhhhhCCCcc----hhhhHHHH
Q 002763 98 VIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYASSW-LVFDVISTIPSELAQKISPKPL----QSYGLFNM 172 (883)
Q Consensus 98 ~i~~~~~~~F~~Di~l~f~~ay~~~~~~~~v~~~~~i~~~Yl~~~-f~iDlis~iP~~~~~~~~~~~~----~~~~~l~~ 172 (883)
++|.+++++|++|++++++.... + +++|++++ .++|+++++|..+......... ...+++++
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~-----------~--~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF-----------K--RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRL 67 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-----------G---GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhcc-----------H--HHHHhcChhhcccccccccccccccccccccccccceEEEEEe
Confidence 47899999999999999997521 1 56788765 5899999999866554422211 13444555
Q ss_pred HHHHHHHHHHHHHHhhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCccccccCCcccccchhHHH
Q 002763 173 LRLWRLRRVSALFSRLEKD-RNYNYFWVRCCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRY 251 (883)
Q Consensus 173 lRl~Rl~r~~~~~~~l~~~-~~~~~~~~~~~~l~~~~l~~~h~~aci~~~i~~~~~~~~~~w~~~~~~~~~~~~~~~~~Y 251 (883)
+|++|++|+.+.++.+... ........++.+++..+++++|++||+++.+..........+. ..........+.+++|
T Consensus 68 l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~-~~~~~~~~~~~~f~~~ 146 (200)
T PF00520_consen 68 LRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPT-WDSENDIYGYENFDSF 146 (200)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS--------SS----SSTHHHHSSH
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccchhheecccccccccccc-cccccccccccccccc
Confidence 5555555544444433332 2223444677788889999999999999887643322111110 0111334456778889
Q ss_pred HHHHHHHhhhhhccccCCcccC-----CchhhHHH-HHHHHHHHHHHHHHHHHH
Q 002763 252 VTSMYWSITTLTTVGYGDLHPV-----NTREMVFD-ILFMLFNLGLTAYLIGNM 299 (883)
Q Consensus 252 ~~s~ywai~T~tTVGYGDi~p~-----t~~e~i~~-i~~~l~g~~~~a~~i~~i 299 (883)
..|+||++.++||.|+||..|. +..+.++. ++..+.+++++++++|.|
T Consensus 147 ~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 147 GESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 9999999999999999999997 88999999 777777778899999876
No 87
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.49 E-value=2.5e-13 Score=140.67 Aligned_cols=134 Identities=37% Similarity=0.457 Sum_probs=119.9
Q ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCc-----HHHHHHHHHcCCCCCCCCcch
Q 002763 554 DPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGH-----ENVIKLLMENHADINSGDVGH 628 (883)
Q Consensus 554 d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~-----~~iv~~Ll~~g~~~~~~~~~~ 628 (883)
..+..+..+.+++|.|+..+..+++++|+..|++++.+|..|.||||+|+..++ .++++.|++.|++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~-------- 136 (235)
T COG0666 65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD-------- 136 (235)
T ss_pred ccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC--------
Confidence 345667789999999999999999999999999999999999999999999999 6777777766653
Q ss_pred hHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 002763 629 FACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIK 708 (883)
Q Consensus 629 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~ 708 (883)
..+.+.+|.+|.||||+|+..|+.+++++|++.|++++..|..|.||++.|+..++.+++
T Consensus 137 --------------------~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~ 196 (235)
T COG0666 137 --------------------LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELV 196 (235)
T ss_pred --------------------CCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHH
Confidence 114556689999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 002763 709 CIFQSCK 715 (883)
Q Consensus 709 ~~L~~~~ 715 (883)
+.+...+
T Consensus 197 ~~l~~~~ 203 (235)
T COG0666 197 KLLLDKG 203 (235)
T ss_pred HHHHhcC
Confidence 9999876
No 88
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.45 E-value=4.9e-13 Score=138.51 Aligned_cols=124 Identities=40% Similarity=0.552 Sum_probs=113.9
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHhCCC---CCCCCCCCCCCHH
Q 002763 528 DLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGS-----ENCVLLLLDYEA---DPNSIDSDGNVPL 599 (883)
Q Consensus 528 ~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~-----~~~v~~Ll~~ga---~~~~~d~~g~tpL 599 (883)
.+.++++.++..++...+++++..|++++.+|.+|.||||+|+..|+ .++++.|++.|+ +.+.+|..|+|||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl 151 (235)
T COG0666 72 DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL 151 (235)
T ss_pred cccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchh
Confidence 36789999999999999999999999999999999999999999999 999999999999 6667799999999
Q ss_pred HHHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHH
Q 002763 600 WEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLL 679 (883)
Q Consensus 600 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll 679 (883)
|+|+..|+.+++++|++.|++ ++..+..|.|+++.|+..++.++++.++
T Consensus 152 ~~A~~~~~~~~~~~ll~~~~~-------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~l~ 200 (235)
T COG0666 152 HWAALNGDADIVELLLEAGAD-------------------------------PNSRNSYGVTALDPAAKNGRIELVKLLL 200 (235)
T ss_pred HHHHHcCchHHHHHHHhcCCC-------------------------------CcccccCCCcchhhhcccchHHHHHHHH
Confidence 999999999999999987554 4555789999999999999999999999
Q ss_pred hCC
Q 002763 680 DQK 682 (883)
Q Consensus 680 ~~g 682 (883)
+.+
T Consensus 201 ~~~ 203 (235)
T COG0666 201 DKG 203 (235)
T ss_pred hcC
Confidence 976
No 89
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.45 E-value=1.9e-14 Score=153.40 Aligned_cols=229 Identities=22% Similarity=0.302 Sum_probs=146.4
Q ss_pred eEECCCChhHHHHHHHHHHHHHHHHHHhhhhhccccCC------CCCceehhhHhHHHHHHhhheeeeEEEEeCCeeEEE
Q 002763 55 FIVSPYDRRYRVWETYLVLLVIYTAWASPFEFGFLRKP------QRPLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLV 128 (883)
Q Consensus 55 ~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~------~~~~~~i~~~~~~~F~~Di~l~f~~ay~~~~~~~~v 128 (883)
-+|+-++-.-++.-.+++++.+-+.++..+..++.... ...-..||..+++||++-+++||..|-
T Consensus 117 elisgqtltgr~lvvlvfilsigsliiyf~das~~~ve~cq~w~~~~tqqidlafnifflvyffirfiaas--------- 187 (1103)
T KOG1420|consen 117 ELISGQTLTGRVLVVLVFILSIGSLIIYFIDASNPIVETCQNWYKDFTQQIDLAFNIFFLVYFFIRFIAAS--------- 187 (1103)
T ss_pred ceeecccccceeeehhHHHHhhhceEEEEEcCCChHHHhhhhhhhChHHHhhhHhhHHHHHHHHHHHhhcc---------
Confidence 35565555555554455555555544443333333221 122357999999999999999999871
Q ss_pred eCHHHHHHHHhhhhhHHHHHhccchhhhhhhCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHH
Q 002763 129 DCPKQIAWKYASSWLVFDVISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCCKLIFVT 208 (883)
Q Consensus 129 ~~~~~i~~~Yl~~~f~iDlis~iP~~~~~~~~~~~~~~~~~l~~lRl~Rl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 208 (883)
-| .|..+.-+-++|+.++-|.++...+. ..... +|++|-+|+..+..+++.+.-...-+ ..++..++.++
T Consensus 188 --dk--lwf~lemys~vdfftippsfvsiyl~-r~wlg---lrflralrlmtvpdilqylnilktss--sirl~qlvsif 257 (1103)
T KOG1420|consen 188 --DK--LWFWLEMYSVVDFFTIPPSFVSIYLN-RSWLG---LRFLRALRLMTVPDILQYLNILKTSS--SIRLVQLVSIF 257 (1103)
T ss_pred --cc--eeeeeehhhheeeeecCchheEEEec-cchHH---HHHHHHHHhccHHHHHHHHHHHhccc--hhhHHHHHHHH
Confidence 11 34444445577877777765544332 22223 45555555555555555443222211 24666666665
Q ss_pred HHHHHHHHHHhhhheeeecCCCCCccccccCCcccccchhHHHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHH
Q 002763 209 LFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFN 288 (883)
Q Consensus 209 l~~~h~~aci~~~i~~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g 288 (883)
+-+....|.+..+++ +++..|- ++.+ .-...|.++.|+.++||+||||||++..|..|++|.+|++++|
T Consensus 258 isvwltaag~ihlle----nsgdp~~------~f~n-~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~g 326 (1103)
T KOG1420|consen 258 ISVWLTAAGFIHLLE----NSGDPWE------NFQN-NHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGG 326 (1103)
T ss_pred HHHHHhhcceeehhh----cCCChhH------hccC-cccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHH
Confidence 555555566666654 3344442 2222 2234699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHH
Q 002763 289 LGLTAYLIGNMTNLVVHGTSRTRKF 313 (883)
Q Consensus 289 ~~~~a~~i~~i~~~~~~~~~~~~~~ 313 (883)
+.+||--+..|..++.+..+---+|
T Consensus 327 lamfasyvpeiielignr~kyggey 351 (1103)
T KOG1420|consen 327 LAMFASYVPEIIELIGNRKKYGGEY 351 (1103)
T ss_pred HHHHHhhhHHHHHHHccccccCcee
Confidence 9999999999999998765433333
No 90
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.43 E-value=1.1e-12 Score=119.83 Aligned_cols=113 Identities=30% Similarity=0.494 Sum_probs=104.0
Q ss_pred ccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEE-EeCCceEEEEEecCCCeeehhhhhcCCCc
Q 002763 383 LFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEICGEIGVLCYRPQ 461 (883)
Q Consensus 383 lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~-~~~~~~~~i~~l~~g~~fGe~~ll~~~p~ 461 (883)
+|..++++.+..++..++.+.+.+|+.|+.+|+..+.+|+|.+|.++++. ..+|++..+..+.+|++||+..++.+.++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 47889999999999999999999999999999999999999999999988 44567788899999999999999988899
Q ss_pred eeEEEEccceeEEeechhhHHHHHhhcccchHHH
Q 002763 462 LFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTII 495 (883)
Q Consensus 462 ~~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i 495 (883)
.++++|.+.|+++++++++|.++++++|+....+
T Consensus 81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 9999999999999999999999999999765543
No 91
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.42 E-value=1.6e-12 Score=133.46 Aligned_cols=120 Identities=20% Similarity=0.338 Sum_probs=109.6
Q ss_pred ccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEE-EeCCceEEEEEecCCCeeehhhhhcCC-Cce
Q 002763 385 RGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEICGEIGVLCYR-PQL 462 (883)
Q Consensus 385 ~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~-~~~~~~~~i~~l~~g~~fGe~~ll~~~-p~~ 462 (883)
+.+|++.+..++..++...|++|+.|+.+|+.++.+|+|.+|.++++. ..+|++..+..+.+|++||+.+++.+. ++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 568999999999999999999999999999999999999999999987 457888889999999999999988764 678
Q ss_pred eEEEEccceeEEeechhhHHHHHhhcccchHHHHHHHHhhhc
Q 002763 463 FTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLK 504 (883)
Q Consensus 463 ~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~lk 504 (883)
++++|.++|+++.+++++|.++++.+|+....+++.+.+++.
T Consensus 86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~ 127 (211)
T PRK11753 86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQ 127 (211)
T ss_pred EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998888777766543
No 92
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.39 E-value=3e-13 Score=105.79 Aligned_cols=55 Identities=49% Similarity=0.672 Sum_probs=33.7
Q ss_pred HHHcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 002763 548 LLKRG-LDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEA 602 (883)
Q Consensus 548 Ll~~g-~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A 602 (883)
||++| +++|.+|..|.||||+||..|+.+++++|+++|+|++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 67888 89999999999999999999999999999999999999999999999987
No 93
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.38 E-value=9.8e-13 Score=107.79 Aligned_cols=104 Identities=22% Similarity=0.277 Sum_probs=87.8
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHH
Q 002763 565 ALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKE 644 (883)
Q Consensus 565 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~ 644 (883)
-..+++++|..+-|+-.+..|.|+|..= .|++|||+|+-.|..+++++|+..
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~i--------------------------- 56 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISI--------------------------- 56 (117)
T ss_pred hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHh---------------------------
Confidence 4678889999999999988888888654 789999999888887777777765
Q ss_pred HHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 002763 645 IVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLAD 700 (883)
Q Consensus 645 Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~ 700 (883)
|++++.+|+.|-|||-.|++.||.++|++||+.|||-..+..+|.+.++.+.
T Consensus 57 ----GA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eate 108 (117)
T KOG4214|consen 57 ----GANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEATE 108 (117)
T ss_pred ----ccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhcc
Confidence 4566777899999999999999999999999999999888888988776544
No 94
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.36 E-value=2.1e-12 Score=112.86 Aligned_cols=90 Identities=29% Similarity=0.462 Sum_probs=82.6
Q ss_pred hhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeC-CceEEEEEecCCCeeehhhhhcCCCceeEEEEccceeEEeechh
Q 002763 401 AEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKN-GVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRT 479 (883)
Q Consensus 401 ~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~-~~~~~i~~l~~g~~fGe~~ll~~~p~~~tv~a~~~~~l~~l~r~ 479 (883)
++.|++|++|+++|+.++.+|||++|.++++.... ++...+..+.+|++||+.+++.+.|+.++++|.++|+++.|+++
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 80 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE 80 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence 36799999999999999999999999999998554 55557899999999999999999999999999999999999999
Q ss_pred hHHHHHhhccc
Q 002763 480 TFLNIVQANVG 490 (883)
Q Consensus 480 ~f~~ll~~~~~ 490 (883)
+|.++++++|+
T Consensus 81 ~~~~~~~~~p~ 91 (91)
T PF00027_consen 81 DFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHSHH
T ss_pred HHHHHHHhCcC
Confidence 99999999984
No 95
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.36 E-value=5.9e-13 Score=104.12 Aligned_cols=55 Identities=38% Similarity=0.496 Sum_probs=33.7
Q ss_pred HHHcC-CCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 002763 645 IVCYG-GDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLA 699 (883)
Q Consensus 645 Ll~~g-~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A 699 (883)
|+++| .+++.+|..|.||||+||..|+.+++++|++.|+|++.+|.+|+||+|+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 56777 89999999999999999999999999999999999999999999999997
No 96
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.36 E-value=1.2e-12 Score=134.24 Aligned_cols=125 Identities=26% Similarity=0.389 Sum_probs=112.6
Q ss_pred HhHhhhccccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCeeehhh
Q 002763 375 YSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIG 454 (883)
Q Consensus 375 ~~~l~~~~lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fGe~~ 454 (883)
.+.+++.-+|++++++.+.++...|.++.+..|+.|+.||+.++.+|+|.+|+++++.. | .-+..+.+|..|||++
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~--~~v~~~~~g~sFGElA 196 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--G--TYVTTYSPGGSFGELA 196 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--C--eEEeeeCCCCchhhhH
Confidence 45677888999999999999999999999999999999999999999999999999984 3 3578999999999999
Q ss_pred hhcCCCceeEEEEccceeEEeechhhHHHHHhhcccchHHHHHHHHhhh
Q 002763 455 VLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHL 503 (883)
Q Consensus 455 ll~~~p~~~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~l 503 (883)
+..+.||.+|+.|.+++.+|-|+|.+|.+++-.+..-.+.++..+++..
T Consensus 197 Lmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~ 245 (368)
T KOG1113|consen 197 LMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESV 245 (368)
T ss_pred hhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcc
Confidence 9999999999999999999999999999987777666666777766644
No 97
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.35 E-value=3.4e-12 Score=151.89 Aligned_cols=105 Identities=31% Similarity=0.373 Sum_probs=78.8
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHH
Q 002763 565 ALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKE 644 (883)
Q Consensus 565 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~ 644 (883)
+||.||..|+.++++.|+++|+|+|.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Ga------------------------- 139 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGA------------------------- 139 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCC-------------------------
Confidence 4777788888888888888888888888888888888887777777777776544
Q ss_pred HHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhC-------CCCCCCCCCCCCCHHHHHH
Q 002763 645 IVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQ-------KADVDKPDVHGWTPRDLAD 700 (883)
Q Consensus 645 Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-------ga~~~~~d~~g~Tpl~~A~ 700 (883)
+++.+|.+|.||||+|+..|+.+++++|+++ |++++..+..|++|+..+.
T Consensus 140 ------dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 140 ------DPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred ------CCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 4455566778888888888888888888877 7777777777777765443
No 98
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.35 E-value=4.3e-12 Score=125.54 Aligned_cols=88 Identities=32% Similarity=0.316 Sum_probs=59.4
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCcH
Q 002763 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSI-DSDGNVPLWEAMLGGHE 608 (883)
Q Consensus 530 ~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpL~~A~~~g~~ 608 (883)
..+|.-+...|+.+-...||+---++|..|.+|.|||..|+.+|+.+.|++|+++|||+|.. +..+.||||.|+.+|+.
T Consensus 13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~ 92 (396)
T KOG1710|consen 13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ 92 (396)
T ss_pred hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence 46777788888887777777765567778888888888888888888888888888877743 33344444444444444
Q ss_pred HHHHHHHHc
Q 002763 609 NVIKLLMEN 617 (883)
Q Consensus 609 ~iv~~Ll~~ 617 (883)
++.++|++.
T Consensus 93 dvcrlllda 101 (396)
T KOG1710|consen 93 DVCRLLLDA 101 (396)
T ss_pred hHHHHHHhc
Confidence 444444443
No 99
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.33 E-value=1.1e-11 Score=113.98 Aligned_cols=115 Identities=27% Similarity=0.465 Sum_probs=102.9
Q ss_pred ccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEEE-eCCceEEEEEecCCCeeehhhhh--cCC
Q 002763 383 LFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVL--CYR 459 (883)
Q Consensus 383 lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~-~~~~~~~i~~l~~g~~fGe~~ll--~~~ 459 (883)
+|.+++++.+..++..++.+.|++|++|+.+|+.++.+|+|.+|.++++.. .+|++..+..+.+|++||+.+++ ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 578999999999999999999999999999999999999999999999874 56777789999999999999988 346
Q ss_pred CceeEEEEccceeEEeechhhHHHHHhhcccchHHHHH
Q 002763 460 PQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMN 497 (883)
Q Consensus 460 p~~~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i~~ 497 (883)
+...++.+.+.|.+++++.+.|.+.+..++.....+++
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 118 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELLL 118 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHh
Confidence 78899999999999999999999999988876554443
No 100
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.32 E-value=6.8e-12 Score=149.32 Aligned_cols=96 Identities=39% Similarity=0.595 Sum_probs=90.2
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHH
Q 002763 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHEN 609 (883)
Q Consensus 530 ~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~ 609 (883)
...|+.|+..|+.+.++.|++.|+|+|.+|.+|+||||+||.+|+.+++++|+++|+|+|.+|..|.||||+|+..|+.+
T Consensus 83 ~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~ 162 (664)
T PTZ00322 83 TVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE 162 (664)
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-------CCCCCCCC
Q 002763 610 VIKLLMEN-------HADINSGD 625 (883)
Q Consensus 610 iv~~Ll~~-------g~~~~~~~ 625 (883)
++++|+++ |++.+..+
T Consensus 163 iv~~Ll~~~~~~~~~ga~~~~~~ 185 (664)
T PTZ00322 163 VVQLLSRHSQCHFELGANAKPDS 185 (664)
T ss_pred HHHHHHhCCCcccccCCCCCccc
Confidence 99999998 66665443
No 101
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.31 E-value=7.7e-12 Score=105.80 Aligned_cols=77 Identities=26% Similarity=0.554 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhhheeeecCCCCCccccccCCcccccchhHHHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHH
Q 002763 208 TLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLF 287 (883)
Q Consensus 208 ~l~~~h~~aci~~~i~~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~ 287 (883)
.++.++++++++|.+.. + + ...+|.+|+||+++|+|||||||+.|.+..+|+++++.+++
T Consensus 2 ~~~~~l~~~~~~~~~~~----~---~-------------~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~ 61 (79)
T PF07885_consen 2 ILLLVLAFGAIFFYISE----G---S-------------EKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLI 61 (79)
T ss_dssp HHHHHHHHHHHHHHHTT----S---S-------------STTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHH
T ss_pred EEEeeeHHHHHHHHHHH----h---c-------------ccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHH
Confidence 45667778888887721 0 0 11347899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002763 288 NLGLTAYLIGNMTNLVV 304 (883)
Q Consensus 288 g~~~~a~~i~~i~~~~~ 304 (883)
|+.++++.++.+++.+.
T Consensus 62 G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 62 GIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998774
No 102
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.31 E-value=6.1e-12 Score=130.27 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=102.8
Q ss_pred HHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEE-EeCCceEEEEEecCCCeeehhhhhcCCCceeEEEEc
Q 002763 390 DLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTK 468 (883)
Q Consensus 390 ~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~-~~~~~~~~i~~l~~g~~fGe~~ll~~~p~~~tv~a~ 468 (883)
-|...|....+.+.|++||.|+.+|++++.+|+|.+|.|+++. ..+|++.++..+.+|++||+.+++.+.|++++++|.
T Consensus 22 ~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~ 101 (226)
T PRK10402 22 CFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAI 101 (226)
T ss_pred cCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEe
Confidence 3344577789999999999999999999999999999999987 567888899999999999999999999999999999
Q ss_pred cceeEEeechhhHHHHHhhcccchHHHHHHHHhhh
Q 002763 469 RLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHL 503 (883)
Q Consensus 469 ~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~l 503 (883)
++|+++.+++++|.+++..+|.....++..+.+..
T Consensus 102 ~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~ 136 (226)
T PRK10402 102 EECWCLALPMKDCRPLLLNDALFLRKLCKFLSHKN 136 (226)
T ss_pred ccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888777776543
No 103
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.31 E-value=1.7e-11 Score=125.78 Aligned_cols=127 Identities=20% Similarity=0.356 Sum_probs=113.5
Q ss_pred hhccccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEE-EeCCceEEEEEecCCCeeehhhhhc
Q 002763 379 DKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEICGEIGVLC 457 (883)
Q Consensus 379 ~~~~lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~-~~~~~~~~i~~l~~g~~fGe~~ll~ 457 (883)
.+.+.|...+.+....+....+.+.+++|+.|+.+|++++.+|+|.+|.++++. ..+|++.++..+++|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 455667777888888888899999999999999999999999999999999998 4568888999999999999999999
Q ss_pred CCCceeEEEEccceeEEeechhhHHHHHhhcccchHHHHHHHHhhhcc
Q 002763 458 YRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKD 505 (883)
Q Consensus 458 ~~p~~~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~lk~ 505 (883)
+.|++++++|.++|+++.++++.|.+++..+|.....++..+.+++..
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~ 130 (214)
T COG0664 83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQ 130 (214)
T ss_pred CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 989999999999999999999999998877888888888777776544
No 104
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.30 E-value=4.4e-12 Score=98.69 Aligned_cols=54 Identities=44% Similarity=0.631 Sum_probs=30.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Q 002763 562 GRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLM 615 (883)
Q Consensus 562 g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll 615 (883)
|+||||+||..|+.+++++|+++|+|+|.+|.+|.||||.|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 456666666666666666666666666666666666666666666666666654
No 105
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.30 E-value=1.4e-11 Score=121.93 Aligned_cols=88 Identities=28% Similarity=0.301 Sum_probs=45.2
Q ss_pred CCCchhHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 002763 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNE-SDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAML 604 (883)
Q Consensus 526 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~ 604 (883)
+..|.++|..|+..|+.++++.||+.|+|+|. ++..+.||||+||..|+.++.++|++.|+.+...++-|+|+-..|+.
T Consensus 42 D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAF 121 (396)
T KOG1710|consen 42 DPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAF 121 (396)
T ss_pred CCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHH
Confidence 33445555555555555555555555555543 33445555555555555555555555555555555555555555555
Q ss_pred cCcHHHHHH
Q 002763 605 GGHENVIKL 613 (883)
Q Consensus 605 ~g~~~iv~~ 613 (883)
-||.++|..
T Consensus 122 VG~H~CV~i 130 (396)
T KOG1710|consen 122 VGHHECVAI 130 (396)
T ss_pred hcchHHHHH
Confidence 555555443
No 106
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=7.9e-12 Score=132.91 Aligned_cols=91 Identities=33% Similarity=0.410 Sum_probs=86.1
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHH
Q 002763 532 SLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVI 611 (883)
Q Consensus 532 ~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv 611 (883)
.|.-|+..|.+++|+..+..--|+...+..|-||||-|+..||.++|++|++.|+|+|..|.+|+||||.|+.+++..++
T Consensus 553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c 632 (752)
T KOG0515|consen 553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC 632 (752)
T ss_pred HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence 35568999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCC
Q 002763 612 KLLMENHADIN 622 (883)
Q Consensus 612 ~~Ll~~g~~~~ 622 (883)
+.|++.|+.+-
T Consensus 633 kqLVe~Gaavf 643 (752)
T KOG0515|consen 633 KQLVESGAAVF 643 (752)
T ss_pred HHHHhccceEE
Confidence 99999998764
No 107
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.29 E-value=5.3e-11 Score=129.59 Aligned_cols=128 Identities=17% Similarity=0.302 Sum_probs=118.0
Q ss_pred HhHhhhccccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCeeehhh
Q 002763 375 YSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIG 454 (883)
Q Consensus 375 ~~~l~~~~lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fGe~~ 454 (883)
.+++.++|.|..++++.+.+|...+...+|.+||.|+..|.+..++|+|.+|.|+++. +|.+ ++..+..||.||-.+
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~--~~g~-v~~~~~~gdlFg~~~ 82 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS--DGGE-VLDRLAAGDLFGFSS 82 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc--CCCe-eeeeeccCccccchh
Confidence 4678899999999999999999999999999999999999999999999999999986 3323 789999999999999
Q ss_pred hhcCCCceeEEEEccceeEEeechhhHHHHHhhcccchHHHHHHHHhhhcc
Q 002763 455 VLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKD 505 (883)
Q Consensus 455 ll~~~p~~~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~lk~ 505 (883)
+++..+....+.+.+++-+|.|+++.|+++++.||++...+..+..++++.
T Consensus 83 l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~ 133 (610)
T COG2905 83 LFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRD 133 (610)
T ss_pred hcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 999998888999999999999999999999999999999988888877764
No 108
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.26 E-value=8.6e-12 Score=97.04 Aligned_cols=54 Identities=39% Similarity=0.516 Sum_probs=46.4
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 002763 529 LPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLL 582 (883)
Q Consensus 529 ~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll 582 (883)
|.|+||.|+..|+.+++++|+++|+|+|.+|.+|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 578999999999999999999999999999999999999999999999999986
No 109
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.25 E-value=1e-11 Score=132.73 Aligned_cols=131 Identities=18% Similarity=0.285 Sum_probs=116.3
Q ss_pred HHHHHHhHhhhccccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCe
Q 002763 370 SHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEI 449 (883)
Q Consensus 370 ~~~l~~~~l~~~~lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~ 449 (883)
..++..+.+++..+.+++....+..++..|.+..|.+|+.|+++||+++.+|++..|++++.. +| +.++.+++|..
T Consensus 148 ~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g--~ll~~m~~gtv 223 (732)
T KOG0614|consen 148 AKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EG--KLLGKMGAGTV 223 (732)
T ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CC--eeeeccCCchh
Confidence 456677888889999999999999999999999999999999999999999999999999986 43 47899999999
Q ss_pred eehhhhhcCCCceeEEEEccceeEEeechhhHHHHHhhcccchHHHHHHHHhhhc
Q 002763 450 CGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLK 504 (883)
Q Consensus 450 fGe~~ll~~~p~~~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~lk 504 (883)
|||.++|.+.+|+++++|.+++++|.|+|+.|+.+|.........-..++++...
T Consensus 224 FGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~ 278 (732)
T KOG0614|consen 224 FGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVP 278 (732)
T ss_pred hhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999876655555555555433
No 110
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.23 E-value=5.7e-11 Score=124.04 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=108.9
Q ss_pred hhhccccccCCHHHHHHHHHhchh-hccCCCCeEEecCCCCCeEEEEEEceEEEEE-EeCCceEEEEEecCCCeeehhhh
Q 002763 378 MDKVYLFRGVSNDLLFQLVSEMKA-EYFPPKEDVILQNEAPTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEICGEIGV 455 (883)
Q Consensus 378 l~~~~lF~~~s~~~l~~l~~~~~~-~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~-~~~~~~~~i~~l~~g~~fGe~~l 455 (883)
+++.+.|..++++.+..|....+. ..|++||.|+.+||.++.+|+|.+|.|+++. ..+|++.++..+.+|++||+.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 445555557999999999988864 6799999999999999999999999999998 45788888999999999999776
Q ss_pred hcCCCceeEEEEccceeEEeechhhHHHHHhhcccchHHHHHHHHhhhc
Q 002763 456 LCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLK 504 (883)
Q Consensus 456 l~~~p~~~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~lk 504 (883)
+.+ +.+.+++|.++|+++.++++.|.++++.+|+....+++.+.++..
T Consensus 95 ~~~-~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~ 142 (235)
T PRK11161 95 GSG-QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIK 142 (235)
T ss_pred cCC-CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 544 455789999999999999999999999999998888888776543
No 111
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=2.4e-11 Score=129.27 Aligned_cols=92 Identities=28% Similarity=0.436 Sum_probs=85.9
Q ss_pred hhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 002763 628 HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEI 707 (883)
Q Consensus 628 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i 707 (883)
..+.-|+..|.+++++..+..--|+...|..|-||||-|++.||+++|+||++.|+|+|+.|.+||||||.|+..++..+
T Consensus 552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ 631 (752)
T KOG0515|consen 552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM 631 (752)
T ss_pred HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence 34456889999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccc
Q 002763 708 KCIFQSCKETKA 719 (883)
Q Consensus 708 ~~~L~~~~~~~~ 719 (883)
++.|.+.|+.-.
T Consensus 632 ckqLVe~Gaavf 643 (752)
T KOG0515|consen 632 CKQLVESGAAVF 643 (752)
T ss_pred HHHHHhccceEE
Confidence 999999998743
No 112
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.21 E-value=2.3e-11 Score=130.15 Aligned_cols=118 Identities=21% Similarity=0.384 Sum_probs=107.0
Q ss_pred HHHHHhHhhhccccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeC--CceEEEEEecCCC
Q 002763 371 HYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKN--GVEQVVGEAKTGE 448 (883)
Q Consensus 371 ~~l~~~~l~~~~lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~--~~~~~i~~l~~g~ 448 (883)
+..|.++|+++|+|++++++.+..++..++..+|..|++|++||+.++.+|+|.+|.|.+-.... ++++.+..++.||
T Consensus 267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd 346 (732)
T KOG0614|consen 267 HEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGD 346 (732)
T ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccc
Confidence 34577899999999999999999999999999999999999999999999999999999987544 3455788999999
Q ss_pred eeehhhhhcCCCceeEEEEccc-eeEEeechhhHHHHHhhc
Q 002763 449 ICGEIGVLCYRPQLFTVRTKRL-SQLLRLNRTTFLNIVQAN 488 (883)
Q Consensus 449 ~fGe~~ll~~~p~~~tv~a~~~-~~l~~l~r~~f~~ll~~~ 488 (883)
+|||.+++....|++++.|..+ .+++.|+|++|..++-..
T Consensus 347 ~FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l 387 (732)
T KOG0614|consen 347 YFGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDL 387 (732)
T ss_pred hhhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccH
Confidence 9999999999999999999888 899999999999887543
No 113
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.13 E-value=3.4e-10 Score=127.79 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=101.3
Q ss_pred HhHhhhccccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCeeehhh
Q 002763 375 YSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIG 454 (883)
Q Consensus 375 ~~~l~~~~lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fGe~~ 454 (883)
.++++++++|++++++.+..|...++.+.|++||+|+++|+.++.+|+|.+|.|+++....+.+.++..+++|++||+.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~- 85 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG- 85 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-
Confidence 3568899999999999999999999999999999999999999999999999999988544336788899999999985
Q ss_pred hhcCCCceeEEEEccceeEEeechhhHHHHHhhcc
Q 002763 455 VLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANV 489 (883)
Q Consensus 455 ll~~~p~~~tv~a~~~~~l~~l~r~~f~~ll~~~~ 489 (883)
+.+.++..+++|.++|+++.|+++.|..+...++
T Consensus 86 -l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 86 -LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred -hCCCCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 6788999999999999999999999987755443
No 114
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.11 E-value=3.6e-10 Score=114.20 Aligned_cols=99 Identities=13% Similarity=0.251 Sum_probs=89.4
Q ss_pred CCeEEecCCCCCeEEEEEEceEEEEE-EeCCceEEEEEecCCCeeehhhhhcCCCc--eeEEEEccceeEEeechhhHHH
Q 002763 407 KEDVILQNEAPTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEICGEIGVLCYRPQ--LFTVRTKRLSQLLRLNRTTFLN 483 (883)
Q Consensus 407 ge~I~~~ge~~~~ly~i~~G~v~i~~-~~~~~~~~i~~l~~g~~fGe~~ll~~~p~--~~tv~a~~~~~l~~l~r~~f~~ 483 (883)
|+.|+.+|+..+.+|+|.+|.|+++. ..+|++.++..+.+|++||+.+++.+.+. .++++|.++|+++.+++++|.+
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 78999999999999999999999988 56688888999999999999999988753 5789999999999999999999
Q ss_pred HHhhcccchHHHHHHHHhhhcc
Q 002763 484 IVQANVGDGTIIMNNLLQHLKD 505 (883)
Q Consensus 484 ll~~~~~~~~~i~~~l~~~lk~ 505 (883)
+++.+|+....+++.+.+++..
T Consensus 81 l~~~~p~l~~~~~~~l~~~l~~ 102 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSSRILQ 102 (193)
T ss_pred HHHHChHHHHHHHHHHHHHHHH
Confidence 9999999999888887775543
No 115
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.05 E-value=5.9e-10 Score=115.64 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=96.8
Q ss_pred HHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEE-EeCCceEEEEEecCCCeeehhhhhcCCCceeEEEEcccee
Q 002763 394 QLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQ 472 (883)
Q Consensus 394 ~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~-~~~~~~~~i~~l~~g~~fGe~~ll~~~p~~~tv~a~~~~~ 472 (883)
.+....+...|++||.|+.+|+.++.+|||.+|.|+++. ..+|++.++..+.+|++||+. .+.++.++++|.++|+
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~ 109 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTT 109 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceE
Confidence 455668899999999999999999999999999999988 557888888899999999964 4667889999999999
Q ss_pred EEeechhhHHHHHhhcccchHHHHHHHHhhhcc
Q 002763 473 LLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKD 505 (883)
Q Consensus 473 l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~lk~ 505 (883)
++.+++++|.+++..+|+....++..+.+++..
T Consensus 110 v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~ 142 (230)
T PRK09391 110 VRLIKRRSLEQAAATDVDVARALLSLTAGGLRH 142 (230)
T ss_pred EEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888887776543
No 116
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.98 E-value=2.1e-09 Score=109.46 Aligned_cols=100 Identities=16% Similarity=0.228 Sum_probs=86.0
Q ss_pred hchhhccCCCCeEEecCC--CCCeEEEEEEceEEEEE-EeCCceEEEEEecCCCeeehhhhhcCCCceeEEEEccceeEE
Q 002763 398 EMKAEYFPPKEDVILQNE--APTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLL 474 (883)
Q Consensus 398 ~~~~~~~~~ge~I~~~ge--~~~~ly~i~~G~v~i~~-~~~~~~~~i~~l~~g~~fGe~~ll~~~p~~~tv~a~~~~~l~ 474 (883)
..+...|++|+.|+.+|| .++.+|+|++|.|+++. ..+|++.++..+.+|++||+.+++ +.++++++.|.++|+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 356788999999999999 77999999999999988 567899999999999999997665 57889999999999999
Q ss_pred eechhhHHHHHhhcccchHHHHHHHHhhhc
Q 002763 475 RLNRTTFLNIVQANVGDGTIIMNNLLQHLK 504 (883)
Q Consensus 475 ~l~r~~f~~ll~~~~~~~~~i~~~l~~~lk 504 (883)
.++++.| +|+....++..+.+.+.
T Consensus 84 ~i~~~~~------~~~~~~~l~~~l~~~~~ 107 (202)
T PRK13918 84 VLNPALM------SAEDNLVLTQHLVRTLA 107 (202)
T ss_pred EEEHHHc------ChhhHHHHHHHHHHHHH
Confidence 9999987 46666777777665544
No 117
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.96 E-value=9.5e-10 Score=113.36 Aligned_cols=115 Identities=22% Similarity=0.380 Sum_probs=106.2
Q ss_pred HHHHHhHhhhccccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCee
Q 002763 371 HYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (883)
Q Consensus 371 ~~l~~~~l~~~~lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~f 450 (883)
..+|.+.|+++|+++.+.......++..+.+..|.+|+.|+.||+.++.+|+|.+|+|++....+| ..+ .++.|++|
T Consensus 235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~--v~v-kl~~~dyf 311 (368)
T KOG1113|consen 235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG--VEV-KLKKGDYF 311 (368)
T ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC--eEE-Eechhhhc
Confidence 347889999999999999999999999999999999999999999999999999999999875555 334 99999999
Q ss_pred ehhhhhcCCCceeEEEEccceeEEeechhhHHHHHhhc
Q 002763 451 GEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488 (883)
Q Consensus 451 Ge~~ll~~~p~~~tv~a~~~~~l~~l~r~~f~~ll~~~ 488 (883)
||.+++.+.||.+++.|.+...+..+++..|..++..-
T Consensus 312 ge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 312 GELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred chHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHH
Confidence 99999999999999999999999999999999998753
No 118
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.95 E-value=1.3e-08 Score=112.41 Aligned_cols=54 Identities=33% Similarity=0.586 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002763 250 RYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLV 303 (883)
Q Consensus 250 ~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~ 303 (883)
.+.+|+||+++|+|||||||+.|.|..+++|+++++++|+.++++.++.+..-+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477999999999999999999999999999999999999999999999887644
No 119
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.86 E-value=2.3e-09 Score=113.24 Aligned_cols=93 Identities=35% Similarity=0.487 Sum_probs=87.2
Q ss_pred CCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHc
Q 002763 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDY-EADPNSIDSDGNVPLWEAMLG 605 (883)
Q Consensus 527 ~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~ 605 (883)
.++-.++.+||..||+..++.+.-.|.|++.+|.+.+|+||+||..|+++++++|++. +.|++.+|..|+|||-.|...
T Consensus 504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F 583 (622)
T KOG0506|consen 504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF 583 (622)
T ss_pred ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence 3456789999999999999999999999999999999999999999999999999986 899999999999999999999
Q ss_pred CcHHHHHHHHHcCC
Q 002763 606 GHENVIKLLMENHA 619 (883)
Q Consensus 606 g~~~iv~~Ll~~g~ 619 (883)
+|.+++++|-+.-.
T Consensus 584 ~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 584 KHKEVVKLLEEAQY 597 (622)
T ss_pred CcHHHHHHHHHHhc
Confidence 99999999988543
No 120
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.85 E-value=2.4e-09 Score=113.13 Aligned_cols=90 Identities=33% Similarity=0.441 Sum_probs=84.8
Q ss_pred hhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHH
Q 002763 628 HFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLD-QKADVDKPDVHGWTPRDLADQQGHEE 706 (883)
Q Consensus 628 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~Tpl~~A~~~~~~~ 706 (883)
..+..|+..|++..++.+.-.|.|++.+|++.+|+||+||.+|+.+++++|++ .+.|++.+|.+|+|||+-|...+|.+
T Consensus 508 i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~ 587 (622)
T KOG0506|consen 508 INVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE 587 (622)
T ss_pred hhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence 45688999999999999999999999999999999999999999999999998 58999999999999999999999999
Q ss_pred HHHHHhhcccc
Q 002763 707 IKCIFQSCKET 717 (883)
Q Consensus 707 i~~~L~~~~~~ 717 (883)
++++|.+....
T Consensus 588 v~k~L~~~~~~ 598 (622)
T KOG0506|consen 588 VVKLLEEAQYP 598 (622)
T ss_pred HHHHHHHHhcc
Confidence 99999987654
No 121
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.77 E-value=4.2e-08 Score=104.30 Aligned_cols=88 Identities=34% Similarity=0.389 Sum_probs=81.8
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCc
Q 002763 529 LPLSLCFAALRGDDLLLHQLLKRGLDPNESD-NNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGH 607 (883)
Q Consensus 529 ~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~ 607 (883)
+.--||..++.|+.+..-.||..|+|+|..+ ..|.||||.||..|+..-+++|+=+|||++..|.+|.||+-+|-..||
T Consensus 133 LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH 212 (669)
T KOG0818|consen 133 LSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGH 212 (669)
T ss_pred HHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCc
Confidence 3456999999999999999999999999876 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 002763 608 ENVIKLLME 616 (883)
Q Consensus 608 ~~iv~~Ll~ 616 (883)
.++.+-|++
T Consensus 213 ~~laeRl~e 221 (669)
T KOG0818|consen 213 HELAERLVE 221 (669)
T ss_pred hHHHHHHHH
Confidence 998887765
No 122
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.66 E-value=7.1e-08 Score=102.63 Aligned_cols=87 Identities=26% Similarity=0.314 Sum_probs=79.1
Q ss_pred hhHHHHHHhCCHHHHHHHHHcCCCccccC-CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 002763 628 HFACTAAEQNNLELLKEIVCYGGDVTRQR-NNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEE 706 (883)
Q Consensus 628 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~ 706 (883)
..+|..+..|+++..-.|+..|+++|..+ ..|.||||+|++.|+.--+++|+-+|||+.+.|.+|.||+++|.+.||.+
T Consensus 135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~ 214 (669)
T KOG0818|consen 135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE 214 (669)
T ss_pred HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence 45677888899999999999999999887 47999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 002763 707 IKCIFQSC 714 (883)
Q Consensus 707 i~~~L~~~ 714 (883)
+.+-|.+.
T Consensus 215 laeRl~e~ 222 (669)
T KOG0818|consen 215 LAERLVEI 222 (669)
T ss_pred HHHHHHHH
Confidence 88777654
No 123
>PF13606 Ank_3: Ankyrin repeat
Probab=98.65 E-value=3e-08 Score=66.02 Aligned_cols=30 Identities=50% Similarity=0.644 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 002763 561 NGRTALHIAASKGSENCVLLLLDYEADPNS 590 (883)
Q Consensus 561 ~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~ 590 (883)
+|+||||+||+.|+.+++++|+++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 578888888888888888888888888773
No 124
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.65 E-value=3.2e-07 Score=97.90 Aligned_cols=93 Identities=18% Similarity=0.272 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 002763 247 LWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQR 326 (883)
Q Consensus 247 ~~~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~ 326 (883)
.-..|..|+|...+|+.++||||++|.|..|+.+++++.++|.++.|.+++.++-. -+..+.-+.+++||-.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRK--------LeLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARK--------LELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 44579999999999999999999999999999999999999999999999998644 4455556778899999
Q ss_pred CCCCHHHHHHHHHHHHHHhhh
Q 002763 327 NQLPIRLQDQMLAHLCLKFRT 347 (883)
Q Consensus 327 ~~lp~~l~~ri~~~~~~~~~~ 347 (883)
.++-+++++-.-+-++..|..
T Consensus 356 tqLTk~~KnAAA~VLqeTW~i 376 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWLI 376 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888776666666643
No 125
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.64 E-value=6.7e-08 Score=103.97 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=92.0
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHH
Q 002763 568 IAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVC 647 (883)
Q Consensus 568 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~ 647 (883)
-|+..+..--++.+-.+|.++-+++.+..|.||+|+..|+.++|++++++|..-
T Consensus 872 ~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~e-------------------------- 925 (1004)
T KOG0782|consen 872 RAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE-------------------------- 925 (1004)
T ss_pred HHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH--------------------------
Confidence 334444333333334456666666666677777777777777777777665321
Q ss_pred cCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccc
Q 002763 648 YGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKET 717 (883)
Q Consensus 648 ~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~ 717 (883)
-++..|..|.|+||-|+..++-.+.++|++.||.+...|..|.||-.-|.+.|+.++..+|.+...-
T Consensus 926 ---lld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq~y 992 (1004)
T KOG0782|consen 926 ---LLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQNY 992 (1004)
T ss_pred ---HHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhhch
Confidence 2355678999999999999999999999999999999999999999999999999999999876544
No 126
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.60 E-value=5.6e-08 Score=66.74 Aligned_cols=33 Identities=45% Similarity=0.599 Sum_probs=28.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 002763 561 NGRTALHIAASKGSENCVLLLLDYEADPNSIDS 593 (883)
Q Consensus 561 ~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~ 593 (883)
+|.||||+||..|+.+++++|+++|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 588899999999999999999999998888763
No 127
>PF13606 Ank_3: Ankyrin repeat
Probab=98.60 E-value=5.3e-08 Score=64.80 Aligned_cols=30 Identities=50% Similarity=0.870 Sum_probs=28.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 002763 658 NGSTALHVAVCEDNVEIVRFLLDQKADVDK 687 (883)
Q Consensus 658 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~ 687 (883)
+|+||||+||..|+.+++++|+++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999974
No 128
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.56 E-value=1.6e-07 Score=101.83 Aligned_cols=92 Identities=32% Similarity=0.372 Sum_probs=82.9
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCC--CCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q 002763 531 LSLCFAALRGDDLLLHQLLKRGL--DPNE--SDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGG 606 (883)
Q Consensus 531 t~L~~Aa~~g~~~~v~~Ll~~g~--d~n~--~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g 606 (883)
.-|..|+...|+..+-.||.+|. .+|. .+.+|+||||+||..|++.+.++|+-+|+|+.++|.+|+|||.+|-..|
T Consensus 626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~ 705 (749)
T KOG0705|consen 626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG 705 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence 35778888999999999999985 3443 5678899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCC
Q 002763 607 HENVIKLLMENHADIN 622 (883)
Q Consensus 607 ~~~iv~~Ll~~g~~~~ 622 (883)
..+++..|+++|+..+
T Consensus 706 sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 706 SQECIDVLLQYGCPDE 721 (749)
T ss_pred cHHHHHHHHHcCCCcc
Confidence 9999999999997654
No 129
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.54 E-value=4.7e-08 Score=109.81 Aligned_cols=82 Identities=28% Similarity=0.265 Sum_probs=75.9
Q ss_pred hcCCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 002763 523 ARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDN-NGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWE 601 (883)
Q Consensus 523 ~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~ 601 (883)
+..+.-|.++||.|+..|...++++||++|+|++.+|+ .|+||||-|...|+.||+.+||.+|+.+.++|++|.+||..
T Consensus 46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~ 125 (1267)
T KOG0783|consen 46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQF 125 (1267)
T ss_pred hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHH
Confidence 34455689999999999999999999999999999986 69999999999999999999999999999999999999998
Q ss_pred HHH
Q 002763 602 AML 604 (883)
Q Consensus 602 A~~ 604 (883)
-++
T Consensus 126 ~~r 128 (1267)
T KOG0783|consen 126 LSR 128 (1267)
T ss_pred Hhh
Confidence 876
No 130
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.51 E-value=2.1e-07 Score=100.92 Aligned_cols=93 Identities=26% Similarity=0.294 Sum_probs=82.5
Q ss_pred cchhHHHHHHhCCHHHHHHHHHcCCC--cc--ccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 002763 626 VGHFACTAAEQNNLELLKEIVCYGGD--VT--RQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQ 701 (883)
Q Consensus 626 ~~~~l~~a~~~~~~~~~~~Ll~~g~~--~~--~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~ 701 (883)
-+..+..|+...++..+-.||.+|.. +| ..+.+|+||||+||..||+.+.++|+-+|+|+-+.|.+|+|||.||.+
T Consensus 624 lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~ 703 (749)
T KOG0705|consen 624 LGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQ 703 (749)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhh
Confidence 34556778888899999999999953 33 346788999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHhhccccc
Q 002763 702 QGHEEIKCIFQSCKETK 718 (883)
Q Consensus 702 ~~~~~i~~~L~~~~~~~ 718 (883)
.|..+++.+|+++|-..
T Consensus 704 a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 704 AGSQECIDVLLQYGCPD 720 (749)
T ss_pred cccHHHHHHHHHcCCCc
Confidence 99999999999998764
No 131
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.51 E-value=1.4e-07 Score=64.70 Aligned_cols=33 Identities=36% Similarity=0.590 Sum_probs=31.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 002763 658 NGSTALHVAVCEDNVEIVRFLLDQKADVDKPDV 690 (883)
Q Consensus 658 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~ 690 (883)
+|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999998874
No 132
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.49 E-value=2.7e-07 Score=100.05 Aligned_cols=88 Identities=32% Similarity=0.417 Sum_probs=78.6
Q ss_pred hhHHHHHHhcCCHHHHHHHHH--cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCc
Q 002763 530 PLSLCFAALRGDDLLLHQLLK--RGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGH 607 (883)
Q Consensus 530 ~t~L~~Aa~~g~~~~v~~Ll~--~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~ 607 (883)
+.+||.++...+.+-+..++. .+..++..|..|+||||+|+..|+.++++.|+.+||++..+|++|++|||.|+..|+
T Consensus 21 p~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~ 100 (560)
T KOG0522|consen 21 PKPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN 100 (560)
T ss_pred CcccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC
Confidence 356999999999888877554 356789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 002763 608 ENVIKLLMEN 617 (883)
Q Consensus 608 ~~iv~~Ll~~ 617 (883)
.+++..++.+
T Consensus 101 ~q~i~~vlr~ 110 (560)
T KOG0522|consen 101 EQIITEVLRH 110 (560)
T ss_pred HHHHHHHHHH
Confidence 9888777763
No 133
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.48 E-value=6.6e-08 Score=108.66 Aligned_cols=99 Identities=24% Similarity=0.281 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHc-CC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCcHHHHHHHHH
Q 002763 540 GDDLLLHQLLKR-GL-DPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSD-GNVPLWEAMLGGHENVIKLLME 616 (883)
Q Consensus 540 g~~~~v~~Ll~~-g~-d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~-g~tpL~~A~~~g~~~iv~~Ll~ 616 (883)
|....++-++.. +- -.|.+|..|+|+||+|++.|.-+++++|++||+|++.+|.+ |.||||-|+..|+.+++.+|+.
T Consensus 28 s~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~ 107 (1267)
T KOG0783|consen 28 SEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS 107 (1267)
T ss_pred CChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHh
Confidence 444445666653 22 27889999999999999999999999999999999999865 9999999999999999888887
Q ss_pred cCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHc
Q 002763 617 NHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCE 669 (883)
Q Consensus 617 ~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~ 669 (883)
+|+ .+..+|++|..||..-++.
T Consensus 108 ~g~-------------------------------SL~i~Dkeglsplq~~~r~ 129 (1267)
T KOG0783|consen 108 KGR-------------------------------SLRIKDKEGLSPLQFLSRV 129 (1267)
T ss_pred cCC-------------------------------ceEEecccCCCHHHHHhhc
Confidence 654 4556778999999877653
No 134
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.41 E-value=6.8e-07 Score=96.43 Aligned_cols=118 Identities=21% Similarity=0.251 Sum_probs=100.8
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCcHH
Q 002763 532 SLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEAD--PNSIDSDGNVPLWEAMLGGHEN 609 (883)
Q Consensus 532 ~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~--~~~~d~~g~tpL~~A~~~g~~~ 609 (883)
.+..|+..+|.--++..-.+|-++-.++.+.+|.||+|++.|+-++|+++|+||.. ++..|..|.|+||.|+..++-.
T Consensus 869 eil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~ 948 (1004)
T KOG0782|consen 869 EILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA 948 (1004)
T ss_pred HHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence 46778888998888888889999999999999999999999999999999999864 5666788999999999988888
Q ss_pred HHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 002763 610 VIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLD 680 (883)
Q Consensus 610 iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~ 680 (883)
+..+|++.|+.+ -..|..|.||-.-|-..|+.+++.+|-.
T Consensus 949 vc~~lvdagasl-------------------------------~ktd~kg~tp~eraqqa~d~dlaayle~ 988 (1004)
T KOG0782|consen 949 VCQLLVDAGASL-------------------------------RKTDSKGKTPQERAQQAGDPDLAAYLES 988 (1004)
T ss_pred HHHHHHhcchhh-------------------------------eecccCCCChHHHHHhcCCchHHHHHhh
Confidence 888888877654 3455788888888888888888888754
No 135
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.34 E-value=2.1e-06 Score=98.63 Aligned_cols=131 Identities=27% Similarity=0.276 Sum_probs=103.0
Q ss_pred hHHHHHHhcCCHHHHHHHHHcC----CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q 002763 531 LSLCFAALRGDDLLLHQLLKRG----LDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGG 606 (883)
Q Consensus 531 t~L~~Aa~~g~~~~v~~Ll~~g----~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g 606 (883)
-....|+.+||...|+..++.. .++|..|.-|+++||+|..+.+.+++++|++++... ..+|.+|+..|
T Consensus 27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~ 99 (822)
T KOG3609|consen 27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVG 99 (822)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHH
Confidence 3456799999999999999842 578899999999999999999999999999987655 35899999999
Q ss_pred cHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCC
Q 002763 607 HENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVD 686 (883)
Q Consensus 607 ~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~ 686 (883)
..++|++++.+-........ .+.+-...-..+-|||.+||..+|+|+++.||.+|+++.
T Consensus 100 ~v~~VE~ll~~~~~~~~~~~---------------------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~ 158 (822)
T KOG3609|consen 100 SVPLVELLLVHFVDAPYLER---------------------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP 158 (822)
T ss_pred HHHHHHHHHhcccccchhcc---------------------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence 99999999986443211110 111111222467899999999999999999999999876
Q ss_pred CCC
Q 002763 687 KPD 689 (883)
Q Consensus 687 ~~d 689 (883)
..-
T Consensus 159 ~PH 161 (822)
T KOG3609|consen 159 IPH 161 (822)
T ss_pred CCc
Confidence 543
No 136
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.31 E-value=1.2e-06 Score=95.02 Aligned_cols=67 Identities=33% Similarity=0.414 Sum_probs=60.5
Q ss_pred CCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcc
Q 002763 649 GGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCK 715 (883)
Q Consensus 649 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~ 715 (883)
+..++..|..|+||||+|+.-|+.+.++.|+.+||++..+|++||+|||.|+..|+.+++..++.+-
T Consensus 45 ~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~ 111 (560)
T KOG0522|consen 45 SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRHL 111 (560)
T ss_pred hceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence 4567888999999999999999999999999999999999999999999999999998776665443
No 137
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.19 E-value=1.8e-06 Score=101.25 Aligned_cols=131 Identities=22% Similarity=0.238 Sum_probs=100.7
Q ss_pred CCCCchhHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCCHHHHH
Q 002763 525 GRMDLPLSLCFAALRGDDLLLHQLLKR-GLDPNESDNNGRTALHIAASKGSENCVLLLL-DYEADPNSIDSDGNVPLWEA 602 (883)
Q Consensus 525 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll-~~ga~~~~~d~~g~tpL~~A 602 (883)
..+.+.+.+|+++..+..-+++.+++- |-..+..|.+|.--+|++| .++.+++.+|+ -+|..++++|..|+||||+|
T Consensus 570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA 648 (975)
T KOG0520|consen 570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWA 648 (975)
T ss_pred CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchH
Confidence 355778999999999999999999995 7778888888888888844 55555655554 56999999999999999999
Q ss_pred HHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhC
Q 002763 603 MLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQ 681 (883)
Q Consensus 603 ~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ 681 (883)
+..|+..++..|.+.|++..... |++..+..|.|+-.+|..+|+..+.-+|-+.
T Consensus 649 a~~G~e~l~a~l~~lga~~~~~t-------------------------dps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 649 AFRGREKLVASLIELGADPGAVT-------------------------DPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred hhcCHHHHHHHHHHhcccccccc-------------------------CCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 99999999999999887654211 2333344566776676666666666665543
No 138
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.18 E-value=1.3e-06 Score=99.76 Aligned_cols=114 Identities=21% Similarity=0.313 Sum_probs=101.9
Q ss_pred HHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEe-CCceEEEEEecCCCeeehhhhhcCCCceeEEEEc
Q 002763 390 DLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLK-NGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTK 468 (883)
Q Consensus 390 ~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~-~~~~~~i~~l~~g~~fGe~~ll~~~p~~~tv~a~ 468 (883)
+++..+-..+......||+.+++|||..|++|++..|.++-.... +|+..+++.++.||.+|+...+++.||..|+.|.
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~Av 578 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAV 578 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEE
Confidence 456666677888999999999999999999999999999987744 4555589999999999999999999999999999
Q ss_pred cceeEEeechhhHHHHHhhcccchHHHHHHHHhhh
Q 002763 469 RLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHL 503 (883)
Q Consensus 469 ~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~l 503 (883)
.++++.+|+..-|.-+-.+||+....+.+.+.+..
T Consensus 579 RdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 579 RDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred eehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999988887777655
No 139
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.13 E-value=4.9e-06 Score=86.24 Aligned_cols=73 Identities=29% Similarity=0.274 Sum_probs=64.4
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 002763 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEA 602 (883)
Q Consensus 530 ~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A 602 (883)
.--||.||+.|+.+.|++|++.|.++|..|....+||.+|+..||+++|++|+++||-...-.-+|..++.-|
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga 109 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA 109 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence 3468999999999999999999999999999999999999999999999999999997765556676665444
No 140
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.13 E-value=4.9e-06 Score=78.57 Aligned_cols=67 Identities=31% Similarity=0.245 Sum_probs=63.7
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 002763 552 GLDPNESDNNGRTALHIAASKGSENCVLLLLDYE-ADPNSIDSDGNVPLWEAMLGGHENVIKLLMENH 618 (883)
Q Consensus 552 g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g 618 (883)
+.++|.+|..|||||+.||..|+.+.|.+|+++| +.+...|..|.+++.+|-+.|+.+++..|.+.-
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~ 69 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND 69 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence 4689999999999999999999999999999999 899999999999999999999999999999863
No 141
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.13 E-value=2.6e-06 Score=69.69 Aligned_cols=47 Identities=19% Similarity=0.548 Sum_probs=41.4
Q ss_pred cccccccCCeEECCCChhHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 002763 46 SNRRVKLRRFIVSPYDRRYRVWETYLVLLVIYTAWASPFEFGFLRKP 92 (883)
Q Consensus 46 ~~~~~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~ 92 (883)
.+|..+...++|||+|.++.+||++++++++++++++|+.++|..+.
T Consensus 28 ~~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d~ 74 (77)
T PF08412_consen 28 KERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSDE 74 (77)
T ss_pred HHHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecCc
Confidence 34455667899999999999999999999999999999999997654
No 142
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.09 E-value=1.4e-05 Score=94.04 Aligned_cols=129 Identities=20% Similarity=0.175 Sum_probs=103.4
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHH
Q 002763 555 PNESDNNGRTALHIAASKGSENCVLLLLDY-EADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTA 633 (883)
Q Consensus 555 ~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a 633 (883)
.......|+|-||+++..++.-.++.+++- |......|.+|.-.+|. |..++.+.+-+|+.
T Consensus 567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~----------------- 628 (975)
T KOG0520|consen 567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPIS----------------- 628 (975)
T ss_pred cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEe-----------------
Confidence 444566799999999999999999999986 77677777777777777 55555555544443
Q ss_pred HHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCC------CCCCCCCCCHHHHHHHcCCHHH
Q 002763 634 AEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADV------DKPDVHGWTPRDLADQQGHEEI 707 (883)
Q Consensus 634 ~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~------~~~d~~g~Tpl~~A~~~~~~~i 707 (883)
-.|..++.+|..|+||||+|+..|+..++..|.+.|++. ...+..|.|+-++|..+|+..+
T Consensus 629 -------------~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gi 695 (975)
T KOG0520|consen 629 -------------ADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGI 695 (975)
T ss_pred -------------ecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccch
Confidence 245678889999999999999999999999999887753 3445679999999999999999
Q ss_pred HHHHhhc
Q 002763 708 KCIFQSC 714 (883)
Q Consensus 708 ~~~L~~~ 714 (883)
..+|-+.
T Consensus 696 a~~lse~ 702 (975)
T KOG0520|consen 696 AGYLSEK 702 (975)
T ss_pred HHHHhhh
Confidence 8888765
No 143
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.07 E-value=2.4e-06 Score=101.41 Aligned_cols=90 Identities=22% Similarity=0.272 Sum_probs=81.6
Q ss_pred CcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 002763 625 DVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGH 704 (883)
Q Consensus 625 ~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~ 704 (883)
.+.+.+|.|+..+...+.+.|+++|+++|..|..|+||||.+...|+...+.+|+++||+.++.|.+|++|+++|....+
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~ 734 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN 734 (785)
T ss_pred cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHhhc
Q 002763 705 EEIKCIFQSC 714 (883)
Q Consensus 705 ~~i~~~L~~~ 714 (883)
.+++-++.-.
T Consensus 735 ~d~~~l~~l~ 744 (785)
T KOG0521|consen 735 ADIVLLLRLA 744 (785)
T ss_pred ccHHHHHhhh
Confidence 7776666544
No 144
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.02 E-value=2e-05 Score=85.02 Aligned_cols=96 Identities=21% Similarity=0.340 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHhhhheeeecCC-----CCCccccccCCcccccchhHHHHHHHHHHhhhhhccccCC--cccCCch
Q 002763 204 LIFVTLFAVHCAGCFYYLLAARYHNP-----ERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGD--LHPVNTR 276 (883)
Q Consensus 204 l~~~~l~~~h~~aci~~~i~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~Y~~s~ywai~T~tTVGYGD--i~p~t~~ 276 (883)
+++.+++...+||++||.++....+- ...|-+ .. .....+..+|+|++-|+||||||. +.|..+.
T Consensus 41 f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~------Cv--~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~ 112 (336)
T PF01007_consen 41 FVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTP------CV--SNVNSFTSAFLFSVETQTTIGYGSRYPTPECPY 112 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-T------SE--CT-TTHHHHHHHHHHHHTT---SSSEB-CSHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCC------ce--ecccchhhheeEEEEEEEEeccCCcccCCCcch
Confidence 33455566678899999887432211 111111 00 113468899999999999999999 6788999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002763 277 EMVFDILFMLFNLGLTAYLIGNMTNLVVHGT 307 (883)
Q Consensus 277 e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~ 307 (883)
..++.++=+++|+++.|+++|.+..-++.-.
T Consensus 113 a~~l~~~q~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 113 AIFLVTIQSLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999988887654
No 145
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.97 E-value=1.8e-05 Score=74.89 Aligned_cols=69 Identities=25% Similarity=0.281 Sum_probs=64.9
Q ss_pred CCCccccCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccc
Q 002763 649 GGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQK-ADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKET 717 (883)
Q Consensus 649 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~ 717 (883)
+.++|.+|..|+|||+.|+..|+.+.+.+|+.+| +.+...|..|.+++.+|.+.|..+++..|.+...+
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE 71 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence 5689999999999999999999999999999999 99999999999999999999999999999887544
No 146
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.94 E-value=7.5e-06 Score=97.29 Aligned_cols=87 Identities=38% Similarity=0.479 Sum_probs=66.1
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcH
Q 002763 529 LPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHE 608 (883)
Q Consensus 529 ~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~ 608 (883)
|.++||.|+..|+.-.++.|++.|+|+|..|..|+||||.+...|+...+.+|+++|+++++.|.+|.+||..|....+.
T Consensus 656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~ 735 (785)
T KOG0521|consen 656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANA 735 (785)
T ss_pred ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccc
Confidence 46778888888888888888888888888888888888888888888888888888888888888888888887666555
Q ss_pred HHHHHHH
Q 002763 609 NVIKLLM 615 (883)
Q Consensus 609 ~iv~~Ll 615 (883)
+++-++.
T Consensus 736 d~~~l~~ 742 (785)
T KOG0521|consen 736 DIVLLLR 742 (785)
T ss_pred cHHHHHh
Confidence 5554443
No 147
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.92 E-value=0.00045 Score=79.79 Aligned_cols=128 Identities=21% Similarity=0.313 Sum_probs=77.6
Q ss_pred cCCeEECCCChhH---------HHHHHHHHHHHHHHHHHhhhhhccccCCC--CCceeh-hhHhHHHHHHhhheeeeEEE
Q 002763 52 LRRFIVSPYDRRY---------RVWETYLVLLVIYTAWASPFEFGFLRKPQ--RPLSVI-DNVVNGFFAVDIILTFFVAY 119 (883)
Q Consensus 52 ~~~~ii~P~s~~~---------~~w~~~~~~~~~~~~~~~p~~~~f~~~~~--~~~~~i-~~~~~~~F~~Di~l~f~~ay 119 (883)
|-.+++.|+++|+ ..++.+++++++++++.+..+.--..... ..+..+ ++|+..+|++|+.+....--
T Consensus 1102 Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaIfV~Em~lKVVALG 1181 (1956)
T KOG2302|consen 1102 WSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAIFVVEMTLKVVALG 1181 (1956)
T ss_pred HHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHHHHHHHHHHHHhhh
Confidence 3468999999875 46777888888888888876642222222 223344 48999999999988764421
Q ss_pred EeCCeeEEEeCHHHHHHHHhh-hhhHHHHH----hccchhhhhhhCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhc
Q 002763 120 LDKATYLLVDCPKQIAWKYAS-SWLVFDVI----STIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKD 191 (883)
Q Consensus 120 ~~~~~~~~v~~~~~i~~~Yl~-~~f~iDli----s~iP~~~~~~~~~~~~~~~~~l~~lRl~Rl~r~~~~~~~l~~~ 191 (883)
.--| -..|++ +|..+|.+ |++-+.+... .....+.++++|.||++|-+|.++.+.+....
T Consensus 1182 l~fg-----------e~aYl~ssWN~LDgflv~vsviDilvs~a-sa~g~kILgVlrvLRlLRtlRpLRviSra~gl 1246 (1956)
T KOG2302|consen 1182 LYFG-----------EQAYLRSSWNVLDGFLVAVSVIDILVSQA-SAGGAKILGVLRVLRLLRTLRPLRVISRAPGL 1246 (1956)
T ss_pred hccc-----------hHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhhHHHHHhhcccH
Confidence 1111 245664 46677754 3333222221 22244667777777777777777776665443
No 148
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.90 E-value=3.3e-05 Score=80.24 Aligned_cols=61 Identities=34% Similarity=0.450 Sum_probs=56.9
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 002763 565 ALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGD 625 (883)
Q Consensus 565 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~ 625 (883)
-|..||..|..+.|+.|++.|.++|..|...++||.+|+..||.++|++|+++||--....
T Consensus 39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdt 99 (516)
T KOG0511|consen 39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDT 99 (516)
T ss_pred HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccc
Confidence 4899999999999999999999999999999999999999999999999999998665443
No 149
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.87 E-value=8.2e-05 Score=76.45 Aligned_cols=59 Identities=25% Similarity=0.473 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhhhhccccCCcccCCc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 002763 250 RYVTSMYWSITTLTTVGYGDLHPVNT--------REMVFDILFMLFNLGLTAYLIGNMTNLVVHGTS 308 (883)
Q Consensus 250 ~Y~~s~ywai~T~tTVGYGDi~p~t~--------~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~ 308 (883)
+|++|+||.++|+||+|+||.++.-. .-+.++.+++++|+.+++-.+..+.-.|..++.
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~ 252 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNA 252 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 49999999999999999999988533 446778888999999998888777666654433
No 150
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.86 E-value=6.5e-05 Score=86.01 Aligned_cols=57 Identities=25% Similarity=0.614 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002763 250 RYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHG 306 (883)
Q Consensus 250 ~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~ 306 (883)
.+..|+||+++++||+|||++.|.|..|++++|++.++|+-++.++++.++..+...
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999998887643
No 151
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.80 E-value=5.9e-05 Score=87.05 Aligned_cols=129 Identities=19% Similarity=0.152 Sum_probs=90.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCC----CCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhC
Q 002763 562 GRTALHIAASKGSENCVLLLLDYE----ADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQN 637 (883)
Q Consensus 562 g~TpLh~Aa~~g~~~~v~~Ll~~g----a~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~ 637 (883)
+.--...|+.+|+...|+..++.. .++|.+|.-|+++|+.|+.+.+.+++++|++++... +..+.+|+..+
T Consensus 25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-----gdALL~aI~~~ 99 (822)
T KOG3609|consen 25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-----GDALLLAIAVG 99 (822)
T ss_pred hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-----chHHHHHHHHH
Confidence 334577899999999999988753 478889999999999999999999999999875443 33344444444
Q ss_pred CHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccc
Q 002763 638 NLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKET 717 (883)
Q Consensus 638 ~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~ 717 (883)
...+++.++.+..... -++. .+......-..+-||+.+||..+|.||+++|+..|+.
T Consensus 100 ~v~~VE~ll~~~~~~~--------~~~~---------------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~ 156 (822)
T KOG3609|consen 100 SVPLVELLLVHFVDAP--------YLER---------------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC 156 (822)
T ss_pred HHHHHHHHHhcccccc--------hhcc---------------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence 4444444444322111 1111 1112223335678999999999999999999999886
Q ss_pred c
Q 002763 718 K 718 (883)
Q Consensus 718 ~ 718 (883)
-
T Consensus 157 i 157 (822)
T KOG3609|consen 157 I 157 (822)
T ss_pred C
Confidence 3
No 152
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.0002 Score=77.62 Aligned_cols=50 Identities=28% Similarity=0.503 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002763 251 YVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMT 300 (883)
Q Consensus 251 Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~ 300 (883)
.+.|+||.++|++||||||.+|.-+...+..++++-+++++..--+-.++
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~ 267 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELG 267 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHH
Confidence 45799999999999999999999998888877777666666655554444
No 153
>PLN03223 Polycystin cation channel protein; Provisional
Probab=97.38 E-value=0.0079 Score=73.10 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=37.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhc--------cccCCCCCceehhhHhHHHHHHhhheee
Q 002763 58 SPYDRRYRVWETYLVLLVIYTAWASPFEFG--------FLRKPQRPLSVIDNVVNGFFAVDIILTF 115 (883)
Q Consensus 58 ~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~--------f~~~~~~~~~~i~~~~~~~F~~Di~l~f 115 (883)
.+.+-++...+++++++++|.++--..++. +.......|.++|++..++.+.=+++-|
T Consensus 1169 tt~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYF 1234 (1634)
T PLN03223 1169 TYEDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWF 1234 (1634)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888888888776554432 1122345788999988777777666543
No 154
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.27 E-value=0.0012 Score=76.46 Aligned_cols=111 Identities=14% Similarity=0.260 Sum_probs=93.8
Q ss_pred HHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEE-EeCCceEEEEEecCCCeeehh-hh---hcCCC---ceeEE
Q 002763 394 QLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEICGEI-GV---LCYRP---QLFTV 465 (883)
Q Consensus 394 ~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~-~~~~~~~~i~~l~~g~~fGe~-~l---l~~~p---~~~tv 465 (883)
+|+.+++...+..|++|++.|+..+.+|.+.+|.+++.. ..+|++..+..+.+|+.|-.. ++ +.+.| +...+
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~a 189 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAA 189 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeee
Confidence 444788899999999999999999999999999999877 567889999999999877654 44 34555 35778
Q ss_pred EEccceeEEeechhhHHHHHhhcccchHHHHHHHHhhhc
Q 002763 466 RTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLK 504 (883)
Q Consensus 466 ~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~lk 504 (883)
+|.++|.+.+++.+.|......||+-...+++-..-++.
T Consensus 190 kA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq 228 (1158)
T KOG2968|consen 190 KAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQ 228 (1158)
T ss_pred eeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877776665543
No 155
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.00023 Score=73.29 Aligned_cols=52 Identities=23% Similarity=0.537 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002763 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMT 300 (883)
Q Consensus 249 ~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~ 300 (883)
.++.-||||+++.+||||||--.|.|..||+|.|++.++|+-+.-.....++
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 3567899999999999999999999999999999999999877655554443
No 156
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.94 E-value=0.0066 Score=60.20 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=77.9
Q ss_pred HHHHHHhchhhccCCCCeE-EecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCeeehhhhhcCCCceeEEEEccc
Q 002763 392 LFQLVSEMKAEYFPPKEDV-ILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRL 470 (883)
Q Consensus 392 l~~l~~~~~~~~~~~ge~I-~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fGe~~ll~~~p~~~tv~a~~~ 470 (883)
+..|....++..+++|..+ ..+.+..+.+|++.+|.|++ ...|+ ..+.+..+..+||-...+.+....+..+|.++
T Consensus 15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsi-rr~d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~ 91 (207)
T PRK11832 15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISL-RREEN--VLIGITQAPYIMGLADGLMKNDIPYKLISEGN 91 (207)
T ss_pred HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEE-EecCC--eEEEeccCCeEeecccccCCCCceEEEEEcCc
Confidence 3455556677889999997 55555557899999999999 44443 56788899999997765655555689999999
Q ss_pred eeEEeechhhHHHHHhhcccchHHHHH
Q 002763 471 SQLLRLNRTTFLNIVQANVGDGTIIMN 497 (883)
Q Consensus 471 ~~l~~l~r~~f~~ll~~~~~~~~~i~~ 497 (883)
|+++++++++|.++++++. ..+.+..
T Consensus 92 c~~~~i~~~~~~~iie~~~-LW~~~~~ 117 (207)
T PRK11832 92 CTGYHLPAKQTITLIEQNQ-LWRDAFY 117 (207)
T ss_pred cEEEEeeHHHHHHHHHHhc-hHHHHHH
Confidence 9999999999999999764 3333333
No 157
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0064 Score=64.53 Aligned_cols=96 Identities=19% Similarity=0.295 Sum_probs=67.2
Q ss_pred HHHHHHHHHH--HHHHHHhhhheeeecCC-----CCCccccccCCcccccchhHHHHHHHHHHhhhhhccccCCc--ccC
Q 002763 203 KLIFVTLFAV--HCAGCFYYLLAARYHNP-----ERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDL--HPV 273 (883)
Q Consensus 203 ~l~~~~l~~~--h~~aci~~~i~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~Y~~s~ywai~T~tTVGYGDi--~p~ 273 (883)
.+++.+.|++ .+||++||.++....+- ..+|.+ -. .....+..||-|++-|=||+|||-- +..
T Consensus 66 lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tp-----CV---~nV~sf~sAFLFSiETQtTIGYG~R~vTee 137 (400)
T KOG3827|consen 66 LLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTP-----CV---MNVHSFTSAFLFSIETQTTIGYGFRYVTEE 137 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCc-----ce---eeccchhhhheeeeeeeeeeeccccccCcc
Confidence 3444444444 46899999998743321 122221 11 1234577999999999999999974 455
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002763 274 NTREMVFDILFMLFNLGLTAYLIGNMTNLVVHG 306 (883)
Q Consensus 274 t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~ 306 (883)
-+...+..++-+++|+++-|+++|.|..-+..-
T Consensus 138 CP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 138 CPEAIFLLVLQSILGVIINAFMVGAIFAKIARP 170 (400)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 677888888889999999999999998766543
No 158
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.76 E-value=0.0021 Score=69.81 Aligned_cols=71 Identities=23% Similarity=0.298 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCCcc------ccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhh
Q 002763 640 ELLKEIVCYGGDVT------RQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQS 713 (883)
Q Consensus 640 ~~~~~Ll~~g~~~~------~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~ 713 (883)
+.+++|.+++++.| ..+..-.|+||+|+..|+.++|.+||+.|+|+..+|..|.||.+++. +.++-..++.
T Consensus 405 ~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~a 481 (591)
T KOG2505|consen 405 DSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFIA 481 (591)
T ss_pred hHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHHH
Confidence 44555555554433 34455679999999999999999999999999999999999999877 6666666663
No 159
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.70 E-value=0.0017 Score=70.46 Aligned_cols=62 Identities=29% Similarity=0.369 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 002763 542 DLLLHQLLKRGLDPNE------SDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAM 603 (883)
Q Consensus 542 ~~~v~~Ll~~g~d~n~------~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~ 603 (883)
...+++|.+++++.|. .|.--.|+||+|+..|..+||.++|+.|+||..+|..|.||...+.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 6778889998877654 3555779999999999999999999999999999999999998876
No 160
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.42 E-value=0.0051 Score=39.55 Aligned_cols=28 Identities=57% Similarity=0.735 Sum_probs=18.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 002763 562 GRTALHIAASKGSENCVLLLLDYEADPN 589 (883)
Q Consensus 562 g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~ 589 (883)
|.||||+|+..|+.++++.|+++|.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 5667777777777777777776666543
No 161
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.15 E-value=0.0086 Score=38.41 Aligned_cols=29 Identities=45% Similarity=0.800 Sum_probs=24.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhCCCCCC
Q 002763 658 NGSTALHVAVCEDNVEIVRFLLDQKADVD 686 (883)
Q Consensus 658 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~ 686 (883)
+|.||+|+|+..|+.++++.|+++|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 46789999999999999999998888764
No 162
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.08 E-value=0.021 Score=72.92 Aligned_cols=108 Identities=18% Similarity=0.298 Sum_probs=70.4
Q ss_pred ceehhhHhHHHHHHhhheeeeEEEEeCCeeEEEeCHHHHHHHHhhhhhHHHHHhccchhhhhhhCCCcchhhhHHHHHHH
Q 002763 96 LSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYASSWLVFDVISTIPSELAQKISPKPLQSYGLFNMLRL 175 (883)
Q Consensus 96 ~~~i~~~~~~~F~~Di~l~f~~ay~~~~~~~~v~~~~~i~~~Yl~~~f~iDlis~iP~~~~~~~~~~~~~~~~~l~~lRl 175 (883)
+.+.+.+.-++|.+|+.+....- +|. ..+.++|.++|++-++ +.++... ......+.++|.+|+
T Consensus 475 l~~~~~vF~~lF~~Em~~ki~al-----------~~~---~yF~~~~n~fD~~iv~-l~~~~~~-~~~~~g~svLr~frl 538 (1592)
T KOG2301|consen 475 LYLGNVVFTGLFTVEMILKIYAL-----------GPR---NYFRRGWNIFDLIIVL-LSLLELL-LKNVYGLSVLRSFRL 538 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-----------CcH---HHHhhhcchheEEEEe-hhhHHhc-ccchHHHHHHHHHHH
Confidence 45677788889999999877652 322 4455677899998888 5555444 445567778888888
Q ss_pred HHHHHHHHHHHhhhhccc-hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 002763 176 WRLRRVSALFSRLEKDRN-YNYFWVRCCKLIFVTLFAVHCAGCFY 219 (883)
Q Consensus 176 ~Rl~r~~~~~~~l~~~~~-~~~~~~~~~~l~~~~l~~~h~~aci~ 219 (883)
+|++|+.+..-.++.... +......+..|++++++++.++|.+-
T Consensus 539 lRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~g 583 (1592)
T KOG2301|consen 539 LRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIG 583 (1592)
T ss_pred HHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888887766655422 22333455556655555555555443
No 163
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=95.87 E-value=0.13 Score=47.79 Aligned_cols=105 Identities=10% Similarity=0.114 Sum_probs=83.5
Q ss_pred cCCHHHHHHHHHh-chhhccCCCCeEEecCCCC-CeEEEEEEceEEEEEEeCCceEEEEEecCCCeeehhhhhcC-----
Q 002763 386 GVSNDLLFQLVSE-MKAEYFPPKEDVILQNEAP-TDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCY----- 458 (883)
Q Consensus 386 ~~s~~~l~~l~~~-~~~~~~~~ge~I~~~ge~~-~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fGe~~ll~~----- 458 (883)
++|......|+.. .+.....+||.-..||..+ |.+-++++|.+.+.. +| +.+..+.|.++...-....-
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~--~g--~fLH~I~p~qFlDSPEW~s~~~s~~ 89 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC--DG--RFLHYIYPYQFLDSPEWESLRPSED 89 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE--CC--EeeEeecccccccChhhhccccCCC
Confidence 5788888888887 6678899999998888754 679999999999876 44 36778888887775544433
Q ss_pred CCceeEEEEccceeEEeechhhHHHHHhhcccchHH
Q 002763 459 RPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTI 494 (883)
Q Consensus 459 ~p~~~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~ 494 (883)
..-..|+.|.+.|+.+.-+|+.+..++..+|-....
T Consensus 90 ~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~v 125 (153)
T PF04831_consen 90 DKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAV 125 (153)
T ss_pred CeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHH
Confidence 234589999999999999999999999998765443
No 164
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.85 E-value=0.2 Score=61.61 Aligned_cols=91 Identities=11% Similarity=0.181 Sum_probs=55.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCceehhhHhHHHHHHhhheeeeEEEEeCCeeEEEeCHHHHHHHHh
Q 002763 60 YDRRYRVWETYLVLLVIYTAWASPFEFGFLRKPQRPLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYA 139 (883)
Q Consensus 60 ~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~i~~~~~~~F~~Di~l~f~~ay~~~~~~~~v~~~~~i~~~Yl 139 (883)
..+...+|..++..+.++.++...+.+-|...+ ..+.++-++-.+-+++|-+=..+.. +.+. =+++++..|.
T Consensus 789 sAPIvkFw~~~l~yi~FL~lftYvlLv~~~~~P-s~~Ew~~~~~iftl~~E~vRq~~~s---e~~~----l~~kv~v~f~ 860 (1381)
T KOG3614|consen 789 SAPIVKFWLNVLSYIAFLLLFTYVLLVDFQPSP-SMWEWILFAWIFTLFLEEVRQIFIS---ESGL----LPQKVRVYFA 860 (1381)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHheeccCCCC-CccchhHHHHHHHHHHHHHHHHhcC---CCcc----hhhHHHHHHH
Confidence 445667787777777777766666666665554 3333333333334455554444333 2221 2567777778
Q ss_pred hhhhHHHHHhccchhhhhh
Q 002763 140 SSWLVFDVISTIPSELAQK 158 (883)
Q Consensus 140 ~~~f~iDlis~iP~~~~~~ 158 (883)
..|+++|+++++-|.+.+.
T Consensus 861 d~wN~~d~~ai~~F~vG~~ 879 (1381)
T KOG3614|consen 861 DFWNLIDLLAILLFLVGPV 879 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhe
Confidence 8899999999988776543
No 165
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.71 E-value=0.0033 Score=71.85 Aligned_cols=47 Identities=28% Similarity=0.595 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhhhccccCCcccCCchhh--------HHHHHHHHHHHHHHHHHH
Q 002763 250 RYVTSMYWSITTLTTVGYGDLHPVNTREM--------VFDILFMLFNLGLTAYLI 296 (883)
Q Consensus 250 ~Y~~s~ywai~T~tTVGYGDi~p~t~~e~--------i~~i~~~l~g~~~~a~~i 296 (883)
.|+.|+||+++|+|||||||+.|.+..++ .+..++.++|...++...
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 47799999999999999999999999977 688888888888887777
No 166
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=95.06 E-value=0.033 Score=43.90 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=39.5
Q ss_pred ccHHHHHHHHhhhcCCC--cceeecCCCCeeeeeeeeecCCEEEEEecCC
Q 002763 830 STFQELLDIGEKKFGIS--PAKVLNKGGAEVEDIEVIRDGDHLVFVSDGG 877 (883)
Q Consensus 830 ~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 877 (883)
+|||.|++-.+++.+++ ..++++.||.+|.+++=+.||+. |+++..+
T Consensus 9 ~s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~-yVa~g~e 57 (60)
T PF03607_consen 9 RSFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGS-YVASGRE 57 (60)
T ss_dssp SSHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEE-EEEESSS
T ss_pred cCHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCE-EEEEcCC
Confidence 68999999999999987 57899999999999999999987 5465444
No 167
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=94.70 E-value=0.17 Score=48.69 Aligned_cols=75 Identities=9% Similarity=-0.075 Sum_probs=42.0
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCc
Q 002763 528 DLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGH 607 (883)
Q Consensus 528 ~~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~ 607 (883)
+....|-.|+..+-..+++..-+...+- -..+++-.-.||...+.|+|+|.-+. ... .+-.+-.-.|...++
T Consensus 45 ~~~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qn---L~i--~~~~~iFdIA~~~kD 116 (192)
T PF03158_consen 45 DMWCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQN---LHI--YNPEDIFDIAFAKKD 116 (192)
T ss_pred CHHHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhc---cCC--CCchhhhhhhhhccc
Confidence 3355566677777777777665543211 12345566677777777777777332 221 122345556666666
Q ss_pred HHH
Q 002763 608 ENV 610 (883)
Q Consensus 608 ~~i 610 (883)
.++
T Consensus 117 lsL 119 (192)
T PF03158_consen 117 LSL 119 (192)
T ss_pred hhH
Confidence 554
No 168
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.70 E-value=0.33 Score=62.56 Aligned_cols=113 Identities=20% Similarity=0.261 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccCC---CCCceehhhHhHHHHHHhhheeeeEEEEeCCeeEEEeCHHHHHHHHhhh-
Q 002763 66 VWETYLVLLVIYTAWASPFEFGFLRKP---QRPLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYASS- 141 (883)
Q Consensus 66 ~w~~~~~~~~~~~~~~~p~~~~f~~~~---~~~~~~i~~~~~~~F~~Di~l~f~~ay~~~~~~~~v~~~~~i~~~Yl~~- 141 (883)
+.+.+++..+..++...+++-....+. +..+.+.|++...+|++|+++....- -- .. |+++
T Consensus 841 ~f~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~ia~------------Gf--~~-y~rn~ 905 (1592)
T KOG2301|consen 841 WFEAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLKWIAY------------GF--FF-YFRNA 905 (1592)
T ss_pred HHHHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHh------------HH--HH-HHhhH
Confidence 445555566666666666554443332 34577899999999999999987551 11 22 7766
Q ss_pred hhHHHHHhccchhhhhhhCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhccchhH
Q 002763 142 WLVFDVISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNY 196 (883)
Q Consensus 142 ~f~iDlis~iP~~~~~~~~~~~~~~~~~l~~lRl~Rl~r~~~~~~~l~~~~~~~~ 196 (883)
|.++|++-++-..+.+..... ....++.+|.+|.+|.++.+.+.++.+....
T Consensus 906 w~~lDf~Vv~vslisl~~~~~---~~~~ik~lr~lRaLRPLR~i~r~~~mr~Vv~ 957 (1592)
T KOG2301|consen 906 WNWLDFVVVIVSLISLIASLK---ILSLIKSLRILRALRPLRALSRFPGMRVVVL 957 (1592)
T ss_pred HhhhhHHHhhhHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHccccchhHH
Confidence 569999988876665554333 2334455555555555555555555444433
No 169
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=94.67 E-value=0.088 Score=59.24 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=83.2
Q ss_pred HHHhHhhhccccccCCHHHHHHHHHhchhhc-cCCCCeEEecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCeee
Q 002763 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEY-FPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICG 451 (883)
Q Consensus 373 l~~~~l~~~~lF~~~s~~~l~~l~~~~~~~~-~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fG 451 (883)
...+++.+.|-|.+++-...++|+..|-... =.+|.+|+..|+.-|..|+|+.|.|++...++.. ..+.-|+.||
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~----e~l~mGnSFG 353 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR----EELKMGNSFG 353 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce----EEeecccccC
Confidence 3456788889999999999999998877444 4789999999999999999999999998754433 3567899999
Q ss_pred hhhhhcCCCceeEEEE-ccceeEEeechhhHHHHHhh
Q 002763 452 EIGVLCYRPQLFTVRT-KRLSQLLRLNRTTFLNIVQA 487 (883)
Q Consensus 452 e~~ll~~~p~~~tv~a-~~~~~l~~l~r~~f~~ll~~ 487 (883)
--.-...+--.-.+++ ..+|+...+..++|..++..
T Consensus 354 ~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 354 AEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred CCCCcchhhhhhhhheecccceEEEeehhhHHHHHHH
Confidence 5321111111112333 47899999999999988765
No 170
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=94.63 E-value=0.081 Score=43.56 Aligned_cols=56 Identities=30% Similarity=0.549 Sum_probs=41.5
Q ss_pred CCccccEEEEccccHHHHHHHHhhhcCCC--cce-eecCCCCeeeeee---eeecCCEEEEEecC
Q 002763 818 KGEVAGKLVLLPSTFQELLDIGEKKFGIS--PAK-VLNKGGAEVEDIE---VIRDGDHLVFVSDG 876 (883)
Q Consensus 818 ~~~~~g~~~~~p~~~~~l~~~~~~~~~~~--~~~-~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 876 (883)
...+.|.+. +|++||+.-|.++|+++ +.+ |+-+||-+|||=+ -.-|+-.|.++..+
T Consensus 12 r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~lm~L~~g 73 (78)
T PF02017_consen 12 RSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTLPDNTVLMLLEKG 73 (78)
T ss_dssp SSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCSSSSEEEEEEESS
T ss_pred CCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhCCCCCEEEEECCC
Confidence 345677654 99999999999999998 344 6889999999543 45577777766544
No 171
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=94.43 E-value=0.092 Score=43.13 Aligned_cols=55 Identities=29% Similarity=0.482 Sum_probs=40.6
Q ss_pred CccccEEEEccccHHHHHHHHhhhcCCCc--ce-eecCCCCeeeeee---eeecCCEEEEEecC
Q 002763 819 GEVAGKLVLLPSTFQELLDIGEKKFGISP--AK-VLNKGGAEVEDIE---VIRDGDHLVFVSDG 876 (883)
Q Consensus 819 ~~~~g~~~~~p~~~~~l~~~~~~~~~~~~--~~-~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 876 (883)
..+.|.+ -.|++||+.-|.++|+++. .. ++.+||-+|||=+ ..-|+-+|.++..+
T Consensus 13 ~~k~GV~---A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tLp~nT~l~~l~~g 73 (78)
T cd01615 13 SRKKGVA---ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTLPDNTVLMLLEPG 73 (78)
T ss_pred CeeEEEE---cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcCCCCcEEEEECCC
Confidence 4456654 5999999999999999943 33 6889999997643 45667677766543
No 172
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.36 E-value=1.1 Score=54.20 Aligned_cols=180 Identities=13% Similarity=0.165 Sum_probs=80.8
Q ss_pred CCceehhhHhHHHHHHhhheeeeEEEEeCCeeEEEeCHHHHHHHHhhhhhHHHHHhccchhhhhhhCCCcc---hhhhHH
Q 002763 94 RPLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYASSWLVFDVISTIPSELAQKISPKPL---QSYGLF 170 (883)
Q Consensus 94 ~~~~~i~~~~~~~F~~Di~l~f~~ay~~~~~~~~v~~~~~i~~~Yl~~~f~iDlis~iP~~~~~~~~~~~~---~~~~~l 170 (883)
..|.++|.++.++.++=++++.... ..+.+-++....-+-.+.++|+........-. ...-++
T Consensus 498 s~wN~ld~~i~~ls~~~~~~~~~r~--------------~l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~~~l~a~lvfl 563 (798)
T KOG3599|consen 498 SKWNWLDLAIVLLSVVLLVLMITRT--------------GLADGVLTGFERASPRTFIDFTEVAQWNIAARNLLAFLVFL 563 (798)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888877777776655331 11222222222334444555554332211000 122234
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCccccccCCcccccchhHH
Q 002763 171 NMLRLWRLRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIR 250 (883)
Q Consensus 171 ~~lRl~Rl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~h~~aci~~~i~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 250 (883)
-.+|+||+.|+.+-++.+.+. +...|-.++-+.++++++..-.|-+.|.+-. +|+...
T Consensus 564 ~tiK~~k~l~f~~t~~~~s~T--L~ra~~~I~gf~l~~~I~~~aya~l~~llfG-------~~v~~f------------- 621 (798)
T KOG3599|consen 564 TTIKLWKVLRFNKTMSQFSST--LSRAWKEIVGFALMFLILFFAYAQLGYLLFG-------NQVSDF------------- 621 (798)
T ss_pred HHHHHHHhcchhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CccCCh-------------
Confidence 455666666666555544332 2233333333333333333333334444421 122110
Q ss_pred HHHHHHHHhhhhhccccCCcccCCc--hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhchhHH
Q 002763 251 YVTSMYWSITTLTTVGYGDLHPVNT--REMVFDILFMLFNLGLTAYLI-GNMTNLVVHGTSRTR 311 (883)
Q Consensus 251 Y~~s~ywai~T~tTVGYGDi~p~t~--~e~i~~i~~~l~g~~~~a~~i-~~i~~~~~~~~~~~~ 311 (883)
..|.=++.|+.-.--||..|.+. .++++++++...=+++.++++ +.+.+++...+.+.+
T Consensus 622 --~~f~~s~~t~~~~~~G~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk 683 (798)
T KOG3599|consen 622 --RTFVASIVTLLRYILGDFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVK 683 (798)
T ss_pred --HHHHHHHHHHHHHHhccCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 34555555555444567776643 355666555554444443333 333444444444333
No 173
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=94.05 E-value=0.27 Score=48.62 Aligned_cols=48 Identities=31% Similarity=0.405 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHcC-CCcccc---CCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 002763 637 NNLELLKEIVCYG-GDVTRQ---RNNGSTALHVAVCEDNVEIVRFLLDQKAD 684 (883)
Q Consensus 637 ~~~~~~~~Ll~~g-~~~~~~---d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~ 684 (883)
.+..++++.+.+| +++|.+ -+.|.|-|.-|+..++.+|+.+||++||-
T Consensus 228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 3457888888888 577743 45788889999999999999999998884
No 174
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=93.91 E-value=0.13 Score=41.72 Aligned_cols=54 Identities=30% Similarity=0.455 Sum_probs=39.3
Q ss_pred ccccEEEEccccHHHHHHHHhhhcCCC--cce-eecCCCCeeeeee---eeecCCEEEEEecC
Q 002763 820 EVAGKLVLLPSTFQELLDIGEKKFGIS--PAK-VLNKGGAEVEDIE---VIRDGDHLVFVSDG 876 (883)
Q Consensus 820 ~~~g~~~~~p~~~~~l~~~~~~~~~~~--~~~-~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 876 (883)
.+.|.. -.|++||+.-|.++|+++ +.+ ++.+||-+|||=+ ..-|+-.|.++..+
T Consensus 12 ~k~GV~---A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tLp~nt~l~~L~~g 71 (74)
T smart00266 12 VRKGVA---ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTLPDNTELMALEKG 71 (74)
T ss_pred eeEEEE---cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcCCCCcEEEEEcCC
Confidence 345544 599999999999999997 345 5889999997643 44566666655443
No 175
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=93.75 E-value=0.15 Score=41.86 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=41.7
Q ss_pred CCccccEEEEccccHHHHHHHHhhhcCCCc-ce-eecCCCCeeeeee---eeecCCEEEEEecC
Q 002763 818 KGEVAGKLVLLPSTFQELLDIGEKKFGISP-AK-VLNKGGAEVEDIE---VIRDGDHLVFVSDG 876 (883)
Q Consensus 818 ~~~~~g~~~~~p~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 876 (883)
...+.|.+ -.|++||+.-|.++|+++. .+ ++-+||-+|||=+ ..-|+-+|.++..+
T Consensus 12 rs~k~GV~---A~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tLp~nt~l~vL~~g 72 (79)
T cd06538 12 RSLRKGIM---ADSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQALADNTVFMVLGKG 72 (79)
T ss_pred CceeEeEE---cCCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhCCCCcEEEEECCC
Confidence 34456654 5999999999999999953 33 7999999997644 45677777766533
No 176
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=93.36 E-value=0.2 Score=40.96 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=41.9
Q ss_pred CccccEEEEccccHHHHHHHHhhhcCCCc--ce-eecCCCCeeeeee---eeecCCEEEEEecC
Q 002763 819 GEVAGKLVLLPSTFQELLDIGEKKFGISP--AK-VLNKGGAEVEDIE---VIRDGDHLVFVSDG 876 (883)
Q Consensus 819 ~~~~g~~~~~p~~~~~l~~~~~~~~~~~~--~~-~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 876 (883)
..+.|.+ -.|++||+.-|.++|+++. .+ |+.|||-+|||=+ ..-||-+|.++..+
T Consensus 13 ~~k~GV~---A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~LpdnT~lm~L~~g 73 (78)
T cd06539 13 SSRRGVM---ASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMVLEKG 73 (78)
T ss_pred CceEEEE---ecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhCCCCCEEEEECCC
Confidence 3455644 5999999999999999953 33 7999999997644 56688888877644
No 177
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.33 E-value=3.9 Score=48.81 Aligned_cols=47 Identities=26% Similarity=0.301 Sum_probs=36.8
Q ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 002763 579 LLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGD 625 (883)
Q Consensus 579 ~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~ 625 (883)
...+..+..++..+.+|.+|+|.++..|...+...++..+++++..+
T Consensus 593 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~ 639 (727)
T KOG0498|consen 593 KSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDFSD 639 (727)
T ss_pred hhhhhcccccccccccCCCccccccccCccccccccCCCCCCCCccc
Confidence 44566677888889999999999988888888877877777666554
No 178
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=93.02 E-value=0.29 Score=42.03 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=52.9
Q ss_pred CCceEEEecCCCCccccEEEEcc----ccHHHHHHHHhh--hcCCC--cceeecCCCCeeeeeeeeecCCEEEEEecCC
Q 002763 807 NSARVTIGCPEKGEVAGKLVLLP----STFQELLDIGEK--KFGIS--PAKVLNKGGAEVEDIEVIRDGDHLVFVSDGG 877 (883)
Q Consensus 807 ~~~rvti~~p~~~~~~g~~~~~p----~~~~~l~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 877 (883)
.|+||+++.....--.|.-+.++ +||+.|++--++ ++.++ ..++++.||.+|.+++=+.||++.+ ++..+
T Consensus 4 k~k~i~~~rNGD~~~~g~~~~v~~~~~~s~d~lL~~lt~~v~l~~~~~Vr~lyt~~G~~v~~l~~l~~g~~yV-a~g~e 81 (89)
T smart00537 4 KPKRIRFYRNGDRFFKGVRLVVNRKRFKSFEALLQDLTEVVKLDLPHGVRKLYTLDGKKVTSLDELEDGGSYV-ASGTE 81 (89)
T ss_pred cceEEEEEeCCCCCCCCEEEEEChhhcCCHHHHHHHHhhhcccCCCCCeeEEEcCCCCEECCHHHhCcCCEEE-EEcCC
Confidence 57899999763332356655554 589999999999 55555 4679999999999999999997665 55444
No 179
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=92.79 E-value=0.24 Score=40.49 Aligned_cols=55 Identities=24% Similarity=0.446 Sum_probs=39.5
Q ss_pred CccccEEEEccccHHHHHHHHhhhcCCC--cce-eecCCCCeeee--eeeeecCCEEEEEecC
Q 002763 819 GEVAGKLVLLPSTFQELLDIGEKKFGIS--PAK-VLNKGGAEVED--IEVIRDGDHLVFVSDG 876 (883)
Q Consensus 819 ~~~~g~~~~~p~~~~~l~~~~~~~~~~~--~~~-~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 876 (883)
..+.|.. -.|++||+.-|.++|+++ +.+ ++.+||-+|+| -...-|+-+|.++..+
T Consensus 13 s~k~GV~---A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeVtEeyF~tLp~nT~lmvL~~g 72 (77)
T cd06535 13 AQKYGVA---AKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEVTEEYFPTLPDNTELVLLTPG 72 (77)
T ss_pred CeeEeEE---cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEehHHHHhcCCCCcEEEEEcCC
Confidence 3455644 599999999999999997 345 49999999964 1244566666655533
No 180
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=92.61 E-value=0.29 Score=40.32 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=44.8
Q ss_pred cccEEEEccccHHHHHHHHhhhcCCCc-ce-eecCCCCeeeeee---eeecCCEEEEEe--cCCCCCC
Q 002763 821 VAGKLVLLPSTFQELLDIGEKKFGISP-AK-VLNKGGAEVEDIE---VIRDGDHLVFVS--DGGQNTS 881 (883)
Q Consensus 821 ~~g~~~~~p~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~---~~~~~~~l~~~~--~~~~~~~ 881 (883)
+.|.+ -.|++||+.-|.++|+++. .+ |+.|||-+|||=+ ..-|+-+|.++. +.|.+..
T Consensus 15 kkGV~---A~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~tLpdnT~lm~L~~gq~W~p~~ 79 (81)
T cd06537 15 RKGLT---AASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELLEDDTCLMVLEQGQSWSPKS 79 (81)
T ss_pred eEeEE---ccCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhhCCCCCEEEEECCCCccCCCC
Confidence 45544 5999999999999999973 44 7999999997644 577888888886 4466543
No 181
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=92.53 E-value=2.1 Score=41.46 Aligned_cols=137 Identities=12% Similarity=-0.014 Sum_probs=95.3
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCCCcchhHHHHHHhCCHHHHH-
Q 002763 565 ALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADINSGDVGHFACTAAEQNNLELLK- 643 (883)
Q Consensus 565 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~l~~a~~~~~~~~~~- 643 (883)
-|..|+..+...+.+..-+...+- -...++-.-.||+..+.++|+|. |-+....+....+-.|....+.++..
T Consensus 49 Ll~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI---~qnL~i~~~~~iFdIA~~~kDlsLysl 122 (192)
T PF03158_consen 49 LLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWI---GQNLHIYNPEDIFDIAFAKKDLSLYSL 122 (192)
T ss_pred HHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHH---hhccCCCCchhhhhhhhhccchhHHHH
Confidence 467788888888877765543211 12456778899999999999999 44555666666777788888877632
Q ss_pred ---HHHHcCCCccccCCC--CChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhh
Q 002763 644 ---EIVCYGGDVTRQRNN--GSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQS 713 (883)
Q Consensus 644 ---~Ll~~g~~~~~~d~~--g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~ 713 (883)
.+..+...-+..|.. -..-|+.|+..|-.+.+.-.+++|.+++. ++|-.|+..++..+..+++.
T Consensus 123 GY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 123 GYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence 222222111011100 01236789999999999999999999865 69999999999999998864
No 182
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=91.98 E-value=0.33 Score=40.07 Aligned_cols=55 Identities=24% Similarity=0.394 Sum_probs=40.6
Q ss_pred CccccEEEEccccHHHHHHHHhhhcCCC----cce-eecCCCCeeeeee---eeecCCEEEEEecC
Q 002763 819 GEVAGKLVLLPSTFQELLDIGEKKFGIS----PAK-VLNKGGAEVEDIE---VIRDGDHLVFVSDG 876 (883)
Q Consensus 819 ~~~~g~~~~~p~~~~~l~~~~~~~~~~~----~~~-~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 876 (883)
..+.|.. -+|++||+.-|.++|+++ +.+ ++-+||-+|||=+ ..-|+-+|.++..+
T Consensus 13 ~~k~GV~---A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~l~~L~~g 75 (80)
T cd06536 13 QKQHGVA---ASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCLPPNTKFVLLAEN 75 (80)
T ss_pred CeeEeEE---cCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhCCCCcEEEEECCC
Confidence 3455644 599999999999999997 234 5899999997644 45567777766543
No 183
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=90.73 E-value=1.4 Score=43.86 Aligned_cols=94 Identities=20% Similarity=0.183 Sum_probs=52.5
Q ss_pred CCCceehhhHhHHHHHHhhheeeeEEEEeCCeeEEEeCHHHHHHHHhhhhhHHHHHhccchhhhhhhCCCcchhhhHHHH
Q 002763 93 QRPLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYASSWLVFDVISTIPSELAQKISPKPLQSYGLFNM 172 (883)
Q Consensus 93 ~~~~~~i~~~~~~~F~~Di~l~f~~ay~~~~~~~~v~~~~~i~~~Yl~~~f~iDlis~iP~~~~~~~~~~~~~~~~~l~~ 172 (883)
...+.++|.+..+.+.+++..+.... .+. + ......+++++
T Consensus 30 ~~~~~~~d~~~~~~~~~~~~~~~~~~------------~~~------------------~---------~~~~~~~~l~~ 70 (200)
T PF00520_consen 30 RSWWNWFDFISVIPSIVSVILRSYGS------------ASA------------------Q---------SLLRIFRLLRL 70 (200)
T ss_dssp CSHHHHHHHHHHHHHCCHHCCHCSS--------------HH------------------C---------HCHHHHHHHHH
T ss_pred cChhhccccccccccccccccccccc------------ccc------------------c---------ceEEEEEeecc
Confidence 34566788888777777777766542 000 0 11234445555
Q ss_pred HHHHHHHHHHHHHHh-hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Q 002763 173 LRLWRLRRVSALFSR-LEKDRNYNYFWVRCCKLIFVTLFAVHCAGCFYYLLAAR 225 (883)
Q Consensus 173 lRl~Rl~r~~~~~~~-l~~~~~~~~~~~~~~~l~~~~l~~~h~~aci~~~i~~~ 225 (883)
+|++|+.|..+.++. +...........++..++.++++..++.++..+.-...
T Consensus 71 ~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~ 124 (200)
T PF00520_consen 71 LRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDN 124 (200)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhheecccccc
Confidence 555555555442222 12222333334677788888888888888877766553
No 184
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=90.00 E-value=0.68 Score=43.93 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=52.4
Q ss_pred chhHHHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 002763 246 SLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQ 325 (883)
Q Consensus 246 ~~~~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~ 325 (883)
........++|+.+.+++. +-++..|.+..++++.+++.++++++.++-.+++++.+.... ++..++.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHH
Confidence 3345677899999988887 447899999999999999999999999999999999886532 2333455555555
Q ss_pred HC
Q 002763 326 RN 327 (883)
Q Consensus 326 ~~ 327 (883)
.+
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 44
No 185
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=88.72 E-value=1.7 Score=43.24 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=60.2
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCCCCCCC----CCCCcHHHHHHHc--CCHHHHHHHHhCC-CCCCC---CCCCCCCHH
Q 002763 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESD----NNGRTALHIAASK--GSENCVLLLLDYE-ADPNS---IDSDGNVPL 599 (883)
Q Consensus 530 ~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d----~~g~TpLh~Aa~~--g~~~~v~~Ll~~g-a~~~~---~d~~g~tpL 599 (883)
.++|.+|...+..+++-+|+.+ .....+| ..+.--+-++.+. .+..++++.+++| +++|. +.+.|.|-|
T Consensus 180 ~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtML 258 (284)
T PF06128_consen 180 HQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTML 258 (284)
T ss_pred HHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHH
Confidence 5677777777788888888864 1222222 1122234455443 4667778888877 46664 356788889
Q ss_pred HHHHHcCcHHHHHHHHHcCCC
Q 002763 600 WEAMLGGHENVIKLLMENHAD 620 (883)
Q Consensus 600 ~~A~~~g~~~iv~~Ll~~g~~ 620 (883)
--|+..++.+++.+|+++||-
T Consensus 259 DNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 259 DNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred HhHHhcCcHHHHHHHHHcCcc
Confidence 999998998999888888874
No 186
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=88.72 E-value=3.9 Score=46.59 Aligned_cols=51 Identities=22% Similarity=0.165 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002763 170 FNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFAVHCAGCFYYLL 222 (883)
Q Consensus 170 l~~lRl~Rl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~h~~aci~~~i 222 (883)
+.++|++|++|..+-+..+... +......+...++++++++--+|.+.+.+
T Consensus 306 l~~lrll~~l~f~~~~~~~~~t--l~~a~~~l~~f~~~~~i~~~~fa~~g~l~ 356 (425)
T PF08016_consen 306 LLWLRLLKLLRFNRRLSLLSRT--LRRAAKDLLGFFVIFLIIFLAFAQAGYLL 356 (425)
T ss_pred HHHHHHhhheeecchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555554444433322 22333455555555555555555555544
No 187
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.35 E-value=9.2 Score=45.93 Aligned_cols=53 Identities=8% Similarity=0.238 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccc--CCCCCceehhhHhHHHHHHhhheeeeEE
Q 002763 65 RVWETYLVLLVIYTAWASPFEFGFLR--KPQRPLSVIDNVVNGFFAVDIILTFFVA 118 (883)
Q Consensus 65 ~~w~~~~~~~~~~~~~~~p~~~~f~~--~~~~~~~~i~~~~~~~F~~Di~l~f~~a 118 (883)
.+-+.++.+++..+.+.+..+- +.. .....+.+-++...++|+.|+++.++.+
T Consensus 1441 hyld~fit~ii~LnvVtms~eh-yqqp~sldealkycny~ft~vfV~EaV~klvaf 1495 (1956)
T KOG2302|consen 1441 HYLDQFITFIICLNVVTMSEEH-YQQPTSLDEALKYCNYRFTAVFVLEAVLKLVAF 1495 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhCcccHHHHhhhcceeeeehhHHHHHHHHHHH
Confidence 3456666666666665555442 211 1234466778888889999999988764
No 188
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=83.26 E-value=4 Score=34.21 Aligned_cols=68 Identities=24% Similarity=0.280 Sum_probs=50.3
Q ss_pred ceEEEecCCCCccccEEEEcc----ccHHHHHHHHhhhcCC--Cc-ceeecCCC-CeeeeeeeeecCCEEEEEecCC
Q 002763 809 ARVTIGCPEKGEVAGKLVLLP----STFQELLDIGEKKFGI--SP-AKVLNKGG-AEVEDIEVIRDGDHLVFVSDGG 877 (883)
Q Consensus 809 ~rvti~~p~~~~~~g~~~~~p----~~~~~l~~~~~~~~~~--~~-~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 877 (883)
+||++|.....--.|.-+.++ +||+-|++--+++++. .+ .++++-|| ..|.+++-+.||++-+ ++..+
T Consensus 1 k~I~~~rNGD~~~~g~~~~i~~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yV-a~g~e 76 (80)
T cd01617 1 KRVVVYRNGDPFFKGVRLLVNRRRFKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYV-ASGRE 76 (80)
T ss_pred CEEEEEECCCCCCCCEEEEEChhhhCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEE-EECCC
Confidence 367777653333456555543 5899999999999996 33 67999999 8899999999988765 54443
No 189
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=81.18 E-value=2.3 Score=48.40 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHhHhhhccccccCCHHHHHHHHHhchhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeCCceEEE
Q 002763 362 PKAIRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVV 441 (883)
Q Consensus 362 p~~lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~l~~~~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i 441 (883)
|+.++......--...|.+...|.++-..-+..++...+.+.++...++++.|+.+.+.|++++|.|-+-. +
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g----q---- 94 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG----Q---- 94 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec----c----
Confidence 33334333333333456777788888888899999999999999999999999999999999999996632 1
Q ss_pred EEecCCCeeehhhhhcCCCceeEEEEccceeEEee
Q 002763 442 GEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (883)
Q Consensus 442 ~~l~~g~~fGe~~ll~~~p~~~tv~a~~~~~l~~l 476 (883)
.+-|...||.. +|..|..+.-..+.++..++
T Consensus 95 -i~mp~~~fgkr---~g~~r~~nclllq~semivi 125 (1283)
T KOG3542|consen 95 -IYMPYGCFGKR---TGQNRTHNCLLLQESEMIVI 125 (1283)
T ss_pred -eecCccccccc---cccccccceeeecccceeee
Confidence 23344556643 34556666666677776666
No 190
>COG4709 Predicted membrane protein [Function unknown]
Probab=77.57 E-value=14 Score=35.85 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhcc-ccchHHHHHhhc--hHHHHHHHHHHHHHhHhhhccccccCCHHH
Q 002763 315 DTIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDS-EGLQQQETLDSL--PKAIRSSISHYLFYSLMDKVYLFRGVSNDL 391 (883)
Q Consensus 315 ~~~~~~~~~m~~~~lp~~l~~ri~~~~~~~~~~~~-~~~~~~~~l~~L--p~~lr~~i~~~l~~~~l~~~~lF~~~s~~~ 391 (883)
+-++++++|++ .+|+..+.++..+|+.+|+..+ ++.+++|+.++| |+++-.|+....-.+-.+.-|-+++.+...
T Consensus 5 efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ai 82 (195)
T COG4709 5 EFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAI 82 (195)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHH
Confidence 44667777875 8999999999999988887644 567899999987 888888877776656666556666666644
Q ss_pred HH
Q 002763 392 LF 393 (883)
Q Consensus 392 l~ 393 (883)
+.
T Consensus 83 i~ 84 (195)
T COG4709 83 IA 84 (195)
T ss_pred HH
Confidence 43
No 191
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=77.54 E-value=3.1 Score=34.47 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=21.7
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 002763 566 LHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLME 616 (883)
Q Consensus 566 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~ 616 (883)
|..|+.+|+.|+++.+++.+ .++ ..++..|+...+-+++++|++
T Consensus 10 l~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~ 53 (76)
T PF11929_consen 10 LEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIE 53 (76)
T ss_pred HHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHH
Confidence 45555555555555555433 111 234555555555555555554
No 192
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=77.09 E-value=4.1 Score=46.24 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHhhhheeeecCCCCCccccccCCcccccchhHHHHHHHHHHhhhhhccccCCcccCCchhhHHHHH
Q 002763 204 LIFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDIL 283 (883)
Q Consensus 204 l~~~~l~~~h~~aci~~~i~~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~ 283 (883)
+-+.+++.+|+.|...|.+-...+..... .. ....+++-.-..-.|+||+-..+..-|-|.-+|.+-.-++++++
T Consensus 572 LW~lv~~SVhvVal~lYlLDrfSPFgRFk-~~----ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmV 646 (993)
T KOG4440|consen 572 LWLLVGLSVHVVALMLYLLDRFSPFGRFK-VN----DSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMV 646 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccee-ec----cCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHH
Confidence 33455678899999999886543322111 11 01112222334568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002763 284 FMLFNLGLTAYLIGNMTNLVVH 305 (883)
Q Consensus 284 ~~l~g~~~~a~~i~~i~~~~~~ 305 (883)
+.=|.+++.|--.++++..++-
T Consensus 647 WaGFaMIiVASYTANLAAFLVL 668 (993)
T KOG4440|consen 647 WAGFAMIIVASYTANLAAFLVL 668 (993)
T ss_pred Hhhhheeeehhhhhhhhhheee
Confidence 9999999998888888877654
No 193
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=69.45 E-value=7.8 Score=32.07 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=40.6
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 002763 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDY 584 (883)
Q Consensus 530 ~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ 584 (883)
...+..|...||.++++.+++.+ .++ ...+..|+...+-+++++|+++
T Consensus 7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 45688999999999999999866 232 3469999999999999999986
No 194
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=65.10 E-value=28 Score=34.34 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhc-cccchHHHHHhhc--hHHHHHHHHHHH
Q 002763 314 RDTIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTD-SEGLQQQETLDSL--PKAIRSSISHYL 373 (883)
Q Consensus 314 ~~~~~~~~~~m~~~~lp~~l~~ri~~~~~~~~~~~-~~~~~~~~~l~~L--p~~lr~~i~~~l 373 (883)
++-+++++.+++ ++|++-++++.+||+.++... .+|.+++++.++| |..+-+++..+.
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 345677788886 699999999999999988653 3577899999997 888877776554
No 195
>PLN03223 Polycystin cation channel protein; Provisional
Probab=63.15 E-value=75 Score=40.49 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002763 280 FDILFMLFNLGLTAYLIGNMTNLVVHGT 307 (883)
Q Consensus 280 ~~i~~~l~g~~~~a~~i~~i~~~~~~~~ 307 (883)
|..+.+++.+++.-++|++|.+.+....
T Consensus 1399 FfSFILLV~FILLNMFIAII~DSFsEVK 1426 (1634)
T PLN03223 1399 FYSYNIFVFMILFNFLLAIICDAFGEVK 1426 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666777888888888776553
No 196
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=62.02 E-value=14 Score=29.71 Aligned_cols=39 Identities=18% Similarity=0.565 Sum_probs=29.5
Q ss_pred ccccEEEEcccc--HHHHHHHHhhhcCCCc-ce-eecCCCCee
Q 002763 820 EVAGKLVLLPST--FQELLDIGEKKFGISP-AK-VLNKGGAEV 858 (883)
Q Consensus 820 ~~~g~~~~~p~~--~~~l~~~~~~~~~~~~-~~-~~~~~~~~~ 858 (883)
...-|++.+|++ +.-.++-|+|+|++++ +. +.+.||--|
T Consensus 14 ~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GI 56 (76)
T PF03671_consen 14 KLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGI 56 (76)
T ss_dssp TS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE
T ss_pred CCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCccc
Confidence 356788999986 8999999999999987 43 788888655
No 197
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.88 E-value=28 Score=41.76 Aligned_cols=185 Identities=13% Similarity=0.126 Sum_probs=104.0
Q ss_pred eeEEEEccceeEEeechhhHHHHHhhcccchHHHHHHHHhhhcccCCcchhhhhhhHHHHHhcCCCCchhHHHHHHhcCC
Q 002763 462 LFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLARGRMDLPLSLCFAALRGD 541 (883)
Q Consensus 462 ~~tv~a~~~~~l~~l~r~~f~~ll~~~~~~~~~i~~~l~~~lk~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~Aa~~g~ 541 (883)
+..+.+.+--.++.++|+.=-+.+..+|.....-+.-+ .....++-.++..+++-|..++-+-...|-
T Consensus 568 ~iyitkv~gn~V~cl~rd~~~~~~~IDptEy~FKlALi------------~k~ydeVl~lI~ns~LvGqaiIaYLqKkgy 635 (1202)
T KOG0292|consen 568 PIYITKVKGNKVFCLNRDGEIECLTIDPTEYRFKLALL------------NKKYDEVLHLIKNSNLVGQAIIAYLQKKGY 635 (1202)
T ss_pred ceEEEEeeCCEEEEEecCCCeEEEeechHHHHHHHHHH------------hhhhHHHHHHHHhcCcccHHHHHHHHhcCC
Confidence 34455566678888999887777776666543222222 222345556666677766555444444443
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Q 002763 542 DLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGHENVIKLLMENHADI 621 (883)
Q Consensus 542 ~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g~~~ 621 (883)
.++.-.++ ++.+|-+-+|...|+.+++-..-..+-|.+.=..-| ..|...|+.++++...+.--+.
T Consensus 636 peiAL~FV----------kD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLg----e~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 636 PEIALHFV----------KDERTRFELALECGNLEVALEAAKKLDDKDVWERLG----EEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred cceeeeee----------cCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHH----HHHHHhcchHHHHHHHHHhhhh
Confidence 33322222 334566778888888888766666554443222222 3566789999999988865444
Q ss_pred CC------------------------CCcchhHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHH--HHHcCCHHHH
Q 002763 622 NS------------------------GDVGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHV--AVCEDNVEIV 675 (883)
Q Consensus 622 ~~------------------------~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~--A~~~g~~~~v 675 (883)
+. .|..+..+.|-..|+.+--..+++ ..|..||-+ |+.+|..+.+
T Consensus 702 ekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~---------n~g~~~laylta~~~G~~~~a 772 (1202)
T KOG0292|consen 702 EKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKERVKILE---------NGGQLPLAYLTAAAHGLEDQA 772 (1202)
T ss_pred hheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHH---------hcCcccHHHHHHhhcCcHHHH
Confidence 32 122223333444444433222222 245666655 5667877888
Q ss_pred HHHHhC
Q 002763 676 RFLLDQ 681 (883)
Q Consensus 676 ~~Ll~~ 681 (883)
+.|.+.
T Consensus 773 e~l~ee 778 (1202)
T KOG0292|consen 773 EKLGEE 778 (1202)
T ss_pred HHHHHh
Confidence 888763
No 198
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=55.17 E-value=40 Score=26.86 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=31.2
Q ss_pred ccCCCCeEEecCCCCC-eEEEEEEceEEEEEEeCCceEEEEEecCCCee
Q 002763 403 YFPPKEDVILQNEAPT-DFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (883)
Q Consensus 403 ~~~~ge~I~~~ge~~~-~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~f 450 (883)
.++||+..-..-.... .++++++|++.+.. +|+ ...+++|+.+
T Consensus 4 ~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~ 47 (71)
T PF07883_consen 4 TLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV--DGE---RVELKPGDAI 47 (71)
T ss_dssp EEETTEEEEEEEESSEEEEEEEEESEEEEEE--TTE---EEEEETTEEE
T ss_pred EECCCCCCCCEECCCCCEEEEEEECCEEEEE--ccE---EeEccCCEEE
Confidence 5678887666555566 89999999999874 443 3467888864
No 199
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=54.78 E-value=28 Score=27.99 Aligned_cols=47 Identities=28% Similarity=0.490 Sum_probs=33.0
Q ss_pred cccHHHHHHHHhhhcCCCcce-eecCCCCeeeeeee-----eecCCEEEEEec
Q 002763 829 PSTFQELLDIGEKKFGISPAK-VLNKGGAEVEDIEV-----IRDGDHLVFVSD 875 (883)
Q Consensus 829 p~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~l~~~~~ 875 (883)
-.|+++|++..+++.|+++.+ .+.-.|..++|=.. |.||+.|+++.+
T Consensus 19 ~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~~ 71 (71)
T cd01812 19 QATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLED 71 (71)
T ss_pred CCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEecC
Confidence 369999999999999998853 22233555544222 589999987753
No 200
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=52.85 E-value=54 Score=27.78 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=42.1
Q ss_pred eEEEecCCC-CccccEEEEccccHHHHHHHHhhhcCCCcce----ee-cCCCCeeeeeee---------eecCCEEEE
Q 002763 810 RVTIGCPEK-GEVAGKLVLLPSTFQELLDIGEKKFGISPAK----VL-NKGGAEVEDIEV---------IRDGDHLVF 872 (883)
Q Consensus 810 rvti~~p~~-~~~~g~~~~~p~~~~~l~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~---------~~~~~~l~~ 872 (883)
+|+|.|+.. +...-|-+..=-|+.||+..-.+.+|+++.. +. ++++..+-+.+- ++||+.|.+
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 577888854 2344456667789999999999999999864 34 455665544421 677777773
No 201
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=50.13 E-value=42 Score=37.80 Aligned_cols=35 Identities=29% Similarity=0.555 Sum_probs=26.4
Q ss_pred HhhhhhccccCCCCCceehhhHhHHHHHHhhheeeeEE
Q 002763 81 ASPFEFGFLRKPQRPLSVIDNVVNGFFAVDIILTFFVA 118 (883)
Q Consensus 81 ~~p~~~~f~~~~~~~~~~i~~~~~~~F~~Di~l~f~~a 118 (883)
..|=...|. ..++.+||++..+=|.+++++..+.+
T Consensus 263 ~~P~k~~F~---k~pLNIIDllAIlPFYielll~~~~~ 297 (477)
T KOG3713|consen 263 VAPNKLEFF---KSPLNIIDLLAILPFYLELLLTLFGG 297 (477)
T ss_pred cCchHHHHH---hCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 345444554 34689999999999999999987764
No 202
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=49.03 E-value=27 Score=28.14 Aligned_cols=38 Identities=16% Similarity=0.485 Sum_probs=29.0
Q ss_pred cccEEEEcccc--HHHHHHHHhhhcCCCc-c-eeecCCCCee
Q 002763 821 VAGKLVLLPST--FQELLDIGEKKFGISP-A-KVLNKGGAEV 858 (883)
Q Consensus 821 ~~g~~~~~p~~--~~~l~~~~~~~~~~~~-~-~~~~~~~~~~ 858 (883)
..=|++.+|++ +--.++-|+|+|++++ + -+.+.||--|
T Consensus 15 lpfkvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGI 56 (82)
T cd01766 15 LPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGI 56 (82)
T ss_pred CcceEEeccccCchHHHHHHHHHhcCCCccceeEEecCcccc
Confidence 34567777776 6789999999999987 3 3778888655
No 203
>COG3212 Predicted membrane protein [Function unknown]
Probab=47.51 E-value=26 Score=33.10 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=27.5
Q ss_pred EccccHHHHHHHHhhhcCCCcceeecCCCCeeeeeeeeecCCEEE
Q 002763 827 LLPSTFQELLDIGEKKFGISPAKVLNKGGAEVEDIEVIRDGDHLV 871 (883)
Q Consensus 827 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 871 (883)
..|-|++|.++||.++.+ | +|+||++.+|++.++
T Consensus 80 ~~iis~~ea~~iAl~~~~----------G-~v~dieLe~~~g~~v 113 (144)
T COG3212 80 STIISLEEAKEIALKRVP----------G-KVDDIELEEDNGRLV 113 (144)
T ss_pred ccccCHHHHHHHHHHHCC----------C-ceeEEEEeccCCEEE
Confidence 578999999999999873 3 777777777777765
No 204
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=47.36 E-value=37 Score=25.46 Aligned_cols=46 Identities=33% Similarity=0.462 Sum_probs=33.6
Q ss_pred cccHHHHHHHHhhhcCCCcce-eecCCCCeeeeee-----eeecCCEEEEEe
Q 002763 829 PSTFQELLDIGEKKFGISPAK-VLNKGGAEVEDIE-----VIRDGDHLVFVS 874 (883)
Q Consensus 829 p~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~l~~~~ 874 (883)
..|++++++...+++|.++.+ .+-.+|...++-. .+.+|+.+.++.
T Consensus 17 ~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 17 GTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 689999999999999987743 3445565555444 577888887653
No 205
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=47.35 E-value=18 Score=29.41 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=29.6
Q ss_pred ccHHHHHHHHhhhcCCCcce-eecCCCCeeeee------eeeecCCEEEE
Q 002763 830 STFQELLDIGEKKFGISPAK-VLNKGGAEVEDI------EVIRDGDHLVF 872 (883)
Q Consensus 830 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~l~~ 872 (883)
.|+.+|+...+++.|+++.. .+.-.|...+|= -=|.+||.|+|
T Consensus 20 ~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 20 LELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 59999999999999998852 233334444331 12678888875
No 206
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=47.31 E-value=48 Score=26.27 Aligned_cols=49 Identities=29% Similarity=0.582 Sum_probs=33.1
Q ss_pred ccEEEEccc--cHHHHHHHHhhhcCCCccee-ecCCCCeee----eeeeeecCCEEEEEe
Q 002763 822 AGKLVLLPS--TFQELLDIGEKKFGISPAKV-LNKGGAEVE----DIEVIRDGDHLVFVS 874 (883)
Q Consensus 822 ~g~~~~~p~--~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~l~~~~ 874 (883)
.|+.+.+|+ |+.||++ ++++++..+ +--+|.-|. +-..++|||.+-+++
T Consensus 4 Ng~~~~~~~~~tv~~ll~----~l~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLE----SLGLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred CCeEEEcCCCCcHHHHHH----HcCCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 578888876 6888886 577776443 334444442 234799999998875
No 207
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=46.35 E-value=2.3e+02 Score=34.57 Aligned_cols=61 Identities=16% Similarity=0.383 Sum_probs=43.0
Q ss_pred HHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 002763 255 MYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASS 322 (883)
Q Consensus 255 ~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 322 (883)
+-|+++-=-||- --.|+.+..+++..++.+|++++.|.-.++++..+. +++|.+.+..++.
T Consensus 616 llwaLvFnnsVp--v~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMI-----qE~~~d~vSGlsD 676 (1258)
T KOG1053|consen 616 LLWALVFNNSVP--VENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI-----QEEYYDTVSGLSD 676 (1258)
T ss_pred HHHHHHhCCCcC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhhccccCc
Confidence 446666444443 235778889999999999999999999999988764 3445555544443
No 208
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=45.62 E-value=84 Score=35.03 Aligned_cols=58 Identities=14% Similarity=0.308 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002763 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHG 306 (883)
Q Consensus 249 ~~Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~ 306 (883)
--|+.+|-|++..+.+++-++........-.+++++.+++++++.|.|..++..++-.
T Consensus 99 g~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~ 156 (371)
T PF10011_consen 99 GTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVS 156 (371)
T ss_pred HHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 4588889899999888886655344445577888888888899999998888776543
No 209
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=45.17 E-value=5.2e+02 Score=29.52 Aligned_cols=81 Identities=19% Similarity=0.381 Sum_probs=43.5
Q ss_pred HHHhhchHHHHHHHHHH-HHH----hHhhhccccccCCHHHHHHHHHhchhhcc-------------------CCCCeEE
Q 002763 356 ETLDSLPKAIRSSISHY-LFY----SLMDKVYLFRGVSNDLLFQLVSEMKAEYF-------------------PPKEDVI 411 (883)
Q Consensus 356 ~~l~~Lp~~lr~~i~~~-l~~----~~l~~~~lF~~~s~~~l~~l~~~~~~~~~-------------------~~ge~I~ 411 (883)
..+..+|..|+..+... .|. .+...-...+.+|+....+++...+.... .-.-.|+
T Consensus 256 M~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvf 335 (536)
T KOG0500|consen 256 MRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVF 335 (536)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceee
Confidence 33456888888886543 221 22233344455666666666655443333 2233455
Q ss_pred ecCCCCCeEEEEEEceE--EEEEEeCCceEEE
Q 002763 412 LQNEAPTDFYILVTGAV--DLLVLKNGVEQVV 441 (883)
Q Consensus 412 ~~ge~~~~ly~i~~G~v--~i~~~~~~~~~~i 441 (883)
-+|| |++.+|.+ +.+....|+-.++
T Consensus 336 SPgD-----yICrKGdvgkEMyIVk~G~L~Vv 362 (536)
T KOG0500|consen 336 SPGD-----YICRKGDVGKEMYIVKEGKLAVV 362 (536)
T ss_pred CCCC-----eEEecCcccceEEEEEccEEEEE
Confidence 5554 77788877 3444556654443
No 210
>PLN03219 uncharacterized protein; Provisional
Probab=45.08 E-value=56 Score=28.84 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=26.0
Q ss_pred CCCceEEEecCCCCccccEEEEcc------ccHHHHHHHHhhhcCCC
Q 002763 806 INSARVTIGCPEKGEVAGKLVLLP------STFQELLDIGEKKFGIS 846 (883)
Q Consensus 806 ~~~~rvti~~p~~~~~~g~~~~~p------~~~~~l~~~~~~~~~~~ 846 (883)
.+..-+.||.-+.++ ++=..+| ..+++||+.|.+.|||+
T Consensus 39 vpkGh~aVYVG~~~E--~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~ 83 (108)
T PLN03219 39 VPKGHVAVYVGEQME--KKRFVVPISYLNHPLFREFLNRAEEECGFH 83 (108)
T ss_pred CCCCeEEEEECCCCC--ceEEEEEHHHcCChHHHHHHHHHHHHhCCC
Confidence 445667777643211 2333345 57999999999999996
No 211
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=44.36 E-value=47 Score=26.37 Aligned_cols=49 Identities=27% Similarity=0.476 Sum_probs=32.8
Q ss_pred ccEEEEccc--cHHHHHHHHhhhcCCCcce-eecCCCCeeeee----eeeecCCEEEEEe
Q 002763 822 AGKLVLLPS--TFQELLDIGEKKFGISPAK-VLNKGGAEVEDI----EVIRDGDHLVFVS 874 (883)
Q Consensus 822 ~g~~~~~p~--~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~l~~~~ 874 (883)
.|+-..+|+ |+++|++ ++++++.. ++--+|.-|..- ..++|||++-+++
T Consensus 5 Ng~~~~~~~~~tv~~ll~----~l~~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 5 NGEPREVEEGATLAELLE----ELGLDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred CCeEEEcCCCCCHHHHHH----HcCCCCCcEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 466666754 7888884 56666543 233555555555 5899999998875
No 212
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=44.11 E-value=41 Score=27.79 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=36.3
Q ss_pred EEEEcc--ccHHHHHHHHhhhcCC-----CcceeecCCCCeeeeeeeeecCCEEEEEe
Q 002763 824 KLVLLP--STFQELLDIGEKKFGI-----SPAKVLNKGGAEVEDIEVIRDGDHLVFVS 874 (883)
Q Consensus 824 ~~~~~p--~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 874 (883)
..+.+| .|+.||++.-.++++- .....+--||.-|..=..++|||.+.+++
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~p 75 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIP 75 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeC
Confidence 344565 7999999999888752 22224445666666667899999999875
No 213
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=43.74 E-value=46 Score=40.33 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002763 251 YVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVH 305 (883)
Q Consensus 251 Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~ 305 (883)
+..++|.++.++..-| ++..|.+...+++..++.++++++.++-.+++++.+..
T Consensus 382 ~~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~ 435 (656)
T KOG1052|consen 382 LLNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTV 435 (656)
T ss_pred cccchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457788888888888 66999999999999999999999999999999888754
No 214
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=43.11 E-value=1.8e+02 Score=26.03 Aligned_cols=86 Identities=12% Similarity=0.212 Sum_probs=49.3
Q ss_pred HHHHhhhhhHHHHHhccchhhhhhhCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 002763 135 AWKYASSWLVFDVISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFAVHC 214 (883)
Q Consensus 135 ~~~Yl~~~f~iDlis~iP~~~~~~~~~~~~~~~~~l~~lRl~Rl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~h~ 214 (883)
.+.|+.++.+-=+++.+||.+...-.-++...+.++-.+=+.++.--+.+|-++.....- .|--...++..+++++-.
T Consensus 15 ~k~yviGFiLSliLT~i~F~lv~~~~~~~~~~~~~i~~lA~vQi~VqL~~FLHl~~~~~~--~wn~~al~Ft~~i~~iiv 92 (109)
T PRK10582 15 VKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQILVHLVCFLHMNTKSDE--GWNMTAFVFTVLIIAILV 92 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHHHHHHHhcccCCccc--chHHHHHHHHHHHHHHHH
Confidence 678999888888999999998865322222233333444556666666666665432211 222222333344455666
Q ss_pred HHHHhhhh
Q 002763 215 AGCFYYLL 222 (883)
Q Consensus 215 ~aci~~~i 222 (883)
.+.+|...
T Consensus 93 ~GSlWIM~ 100 (109)
T PRK10582 93 VGSIWIMW 100 (109)
T ss_pred HHHHHHHc
Confidence 77777543
No 215
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=42.41 E-value=60 Score=25.77 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=34.4
Q ss_pred ccEEEEcc--ccHHHHHHHHhhhcCCCcce-eecCCCCeee----eeeeeecCCEEEEEe
Q 002763 822 AGKLVLLP--STFQELLDIGEKKFGISPAK-VLNKGGAEVE----DIEVIRDGDHLVFVS 874 (883)
Q Consensus 822 ~g~~~~~p--~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~l~~~~ 874 (883)
.|+.+.+| -|+.+|++ .+|+++.. ++.-+|.-|. +-..++|||.+=+++
T Consensus 6 NG~~~~~~~~~tl~~lL~----~l~~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 6 NGEPRELPDGESVAALLA----REGLAGRRVAVEVNGEIVPRSQHASTALREGDVVEIVH 61 (66)
T ss_pred CCeEEEcCCCCCHHHHHH----hcCCCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEE
Confidence 56777775 47888884 57887655 3445565555 677899999997764
No 216
>PRK07440 hypothetical protein; Provisional
Probab=41.95 E-value=69 Score=26.00 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=35.0
Q ss_pred ccEEEEcc--ccHHHHHHHHhhhcCCCccee-ecCCCCeee----eeeeeecCCEEEEEe
Q 002763 822 AGKLVLLP--STFQELLDIGEKKFGISPAKV-LNKGGAEVE----DIEVIRDGDHLVFVS 874 (883)
Q Consensus 822 ~g~~~~~p--~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~l~~~~ 874 (883)
.|+-+.+| -|+++||+ ++|+++..| +--+|.-|. +=..++|||++=+++
T Consensus 10 NG~~~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 10 NGETRTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred CCEEEEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 46666664 57999994 788877654 445555555 566799999998775
No 217
>PRK06437 hypothetical protein; Provisional
Probab=41.59 E-value=40 Score=27.08 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=31.8
Q ss_pred ccHHHHHHHHhhhcCCCcce-eecCCCCeeeeeeeeecCCEEEEEe
Q 002763 830 STFQELLDIGEKKFGISPAK-VLNKGGAEVEDIEVIRDGDHLVFVS 874 (883)
Q Consensus 830 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 874 (883)
.|+.+|+ +++|+++.. ++--+|.-|..=..++|||++-++.
T Consensus 21 ~tv~dLL----~~Lgi~~~~vaV~vNg~iv~~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 21 LTVNDII----KDLGLDEEEYVVIVNGSPVLEDHNVKKEDDVLILE 62 (67)
T ss_pred CcHHHHH----HHcCCCCccEEEEECCEECCCceEcCCCCEEEEEe
Confidence 5788888 568887644 3557788888888999999998875
No 218
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=40.90 E-value=25 Score=29.07 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=29.4
Q ss_pred ccHHHHHHHHhhhcCCCcce-eecCCCCe-------eeeeeeeecCCEEEE
Q 002763 830 STFQELLDIGEKKFGISPAK-VLNKGGAE-------VEDIEVIRDGDHLVF 872 (883)
Q Consensus 830 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~l~~ 872 (883)
.|+++|++...++.|+++.. .+ -+|.. +.+-.+-.+||.|+|
T Consensus 23 ~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 23 MTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred CcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEE
Confidence 58999999999999998853 23 33444 334455458888875
No 219
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=40.05 E-value=60 Score=32.80 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=45.9
Q ss_pred chhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCeeehh----hhhcCCC---------ceeEE
Q 002763 399 MKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEI----GVLCYRP---------QLFTV 465 (883)
Q Consensus 399 ~~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fGe~----~ll~~~p---------~~~tv 465 (883)
++...+.+||..-......+.+.++++|.+++.. .|+.||++ +.|.+.| +.+++
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~-------------~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~v 97 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSA-------------HGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSV 97 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEee-------------ccchHhhcccccccccCCCCCeEEecCCceEEE
Confidence 3445677888877776666778888899998754 34455544 3555544 56888
Q ss_pred EEccceeEEeech
Q 002763 466 RTKRLSQLLRLNR 478 (883)
Q Consensus 466 ~a~~~~~l~~l~r 478 (883)
.|.+++++..-..
T Consensus 98 tA~t~~~vAvC~A 110 (270)
T COG3718 98 TATTDLEVAVCSA 110 (270)
T ss_pred EeecceEEEEEeC
Confidence 9999988776544
No 220
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=39.22 E-value=30 Score=28.75 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=32.4
Q ss_pred ccHHHHHHHHhhhcCCCcce--------eecCCCCeeeeeeeeecCCEEEEEecC
Q 002763 830 STFQELLDIGEKKFGISPAK--------VLNKGGAEVEDIEVIRDGDHLVFVSDG 876 (883)
Q Consensus 830 ~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~ 876 (883)
.|+.||.+..++++|+++.+ ++ +|+ .+.|.. |.||+.|+++..-
T Consensus 22 ~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L-~d~-~L~~~g-i~~~~~i~l~~~~ 73 (78)
T cd01804 22 ETVEGLKKRISQRLKVPKERLALLHRETRL-SSG-KLQDLG-LGDGSKLTLVPTV 73 (78)
T ss_pred CHHHHHHHHHHHHhCCChHHEEEEECCcCC-CCC-cHHHcC-CCCCCEEEEEeec
Confidence 58999999999999998743 33 233 455554 7899999988654
No 221
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=37.24 E-value=71 Score=30.10 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=37.7
Q ss_pred chhhccCCCCeEEecCC-CCCeEEEEEEceEEEEEEe-CCceEEEEEecCCCeeeh
Q 002763 399 MKAEYFPPKEDVILQNE-APTDFYILVTGAVDLLVLK-NGVEQVVGEAKTGEICGE 452 (883)
Q Consensus 399 ~~~~~~~~ge~I~~~ge-~~~~ly~i~~G~v~i~~~~-~~~~~~i~~l~~g~~fGe 452 (883)
+....+.||...-..-. ..+++++|++|+..+.... ++.++....+.+||.+=.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence 44556677777554443 3568999999999987643 345566778999997653
No 222
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=36.09 E-value=36 Score=38.94 Aligned_cols=53 Identities=15% Similarity=0.351 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhhhccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002763 251 YVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVV 304 (883)
Q Consensus 251 Y~~s~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~ 304 (883)
...|+||++..+.--| -||.|.+..|+|.+.++-+|-+++.+--.++++..+.
T Consensus 596 ifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 596 IFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 5689999999999999 7999999999999999999988888777777776553
No 223
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=35.16 E-value=3e+02 Score=23.98 Aligned_cols=85 Identities=12% Similarity=0.179 Sum_probs=49.0
Q ss_pred HHHHhhhhhHHHHHhccchhhhhhhCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 002763 135 AWKYASSWLVFDVISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFAVHC 214 (883)
Q Consensus 135 ~~~Yl~~~f~iDlis~iP~~~~~~~~~~~~~~~~~l~~lRl~Rl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~h~ 214 (883)
.+.|+-++.+-=+++.+||.+...-.-++...+.++-.+-+.++.-...+|-++.....- .|--...++..++.++-.
T Consensus 4 ~k~yviGFiLsliLT~i~F~~v~~~~~~~~~~~~~i~~~A~iQi~vqL~~FlHl~~~~~~--~~n~~~l~Ft~~i~~iiv 81 (96)
T TIGR02847 4 LKSYLIGFVLSVILTAIPFGLVMSGTLSKGLTLVIIIVLAVVQILVHLVFFLHLNTSSEQ--RWNLISLLFTILIIFILI 81 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHHHHHHHHhhccCcccc--chHHHHHHHHHHHHHHHH
Confidence 467888888888899999998875432322333344445556666666666666532221 122223334444455556
Q ss_pred HHHHhhh
Q 002763 215 AGCFYYL 221 (883)
Q Consensus 215 ~aci~~~ 221 (883)
.+.+|-.
T Consensus 82 ~GSiWIm 88 (96)
T TIGR02847 82 GGSIWIM 88 (96)
T ss_pred HHHHHHH
Confidence 7777754
No 224
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=33.62 E-value=3.1e+02 Score=27.62 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=42.5
Q ss_pred hhchHHHHHHHHHHHHHhHhhhccccc-cCCHHHHHHHHHhchhhc--cCCCCeEEecCCCCC
Q 002763 359 DSLPKAIRSSISHYLFYSLMDKVYLFR-GVSNDLLFQLVSEMKAEY--FPPKEDVILQNEAPT 418 (883)
Q Consensus 359 ~~Lp~~lr~~i~~~l~~~~l~~~~lF~-~~s~~~l~~l~~~~~~~~--~~~ge~I~~~ge~~~ 418 (883)
..+|.. .+.+...+...+++-.-.|. ..++...+.......+.. +.+||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 456666 45555666666555444443 467777888888888888 999999999999765
No 225
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=32.84 E-value=90 Score=27.82 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=34.8
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHhhhc---------cccchHHHHHhhchHHHHHHHHHH
Q 002763 322 SFAQRNQLPIRLQDQMLAHLCLKFRTD---------SEGLQQQETLDSLPKAIRSSISHY 372 (883)
Q Consensus 322 ~~m~~~~lp~~l~~ri~~~~~~~~~~~---------~~~~~~~~~l~~Lp~~lr~~i~~~ 372 (883)
+|+ .-||.++|..|...+...-... ....+...+|..||+.||++|...
T Consensus 48 efL--~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 48 EFL--AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HHH--HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 454 3799999999998775543221 122455678999999999998653
No 226
>PLN03220 uncharacterized protein; Provisional
Probab=32.59 E-value=69 Score=28.15 Aligned_cols=40 Identities=28% Similarity=0.492 Sum_probs=26.9
Q ss_pred CCceEEEecCCCCccccEEEEcc------ccHHHHHHHHhhhcCCC
Q 002763 807 NSARVTIGCPEKGEVAGKLVLLP------STFQELLDIGEKKFGIS 846 (883)
Q Consensus 807 ~~~rvti~~p~~~~~~g~~~~~p------~~~~~l~~~~~~~~~~~ 846 (883)
+..-+.+|.-+.++..+|=..+| ..+.+||+.|.+.|||+
T Consensus 36 PkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~ 81 (105)
T PLN03220 36 PKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFN 81 (105)
T ss_pred CCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCC
Confidence 34456666544322234555566 57899999999999996
No 227
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=32.27 E-value=3.9e+02 Score=28.55 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=37.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 002763 273 VNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAAS 321 (883)
Q Consensus 273 ~t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 321 (883)
-....-++..++|++...+.+.++|.++.+.-..+.+++.+.+-++-..
T Consensus 67 gGi~~Ai~GTl~~~~~~~li~~PiGv~aaIYL~EYa~~~~~t~~ir~~i 115 (292)
T COG0581 67 GGIGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAI 115 (292)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3456678999999999999999999999998877776555544444333
No 228
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=31.70 E-value=82 Score=25.52 Aligned_cols=41 Identities=15% Similarity=0.364 Sum_probs=30.1
Q ss_pred ccHHHHHHHHhhhcCCCcc-eeecCCCCeeeeeeeeecCCEEEEEe
Q 002763 830 STFQELLDIGEKKFGISPA-KVLNKGGAEVEDIEVIRDGDHLVFVS 874 (883)
Q Consensus 830 ~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 874 (883)
.|+.||+ +++|+++. .++--+|.-+..=..++|||.+=++.
T Consensus 24 ~tv~~ll----~~l~~~~~~v~v~vNg~iv~~~~~l~~gD~Veii~ 65 (70)
T PRK08364 24 MKVADIL----RAVGFNTESAIAKVNGKVALEDDPVKDGDYVEVIP 65 (70)
T ss_pred CcHHHHH----HHcCCCCccEEEEECCEECCCCcCcCCCCEEEEEc
Confidence 3788888 56787653 35556676677777899999998764
No 229
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=31.38 E-value=38 Score=37.52 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=38.2
Q ss_pred CCCeeehhhhhcCCCceeEEEEc-cceeEEeechhhHHHHHhhcc
Q 002763 446 TGEICGEIGVLCYRPQLFTVRTK-RLSQLLRLNRTTFLNIVQANV 489 (883)
Q Consensus 446 ~g~~fGe~~ll~~~p~~~tv~a~-~~~~l~~l~r~~f~~ll~~~~ 489 (883)
+||-||..++.-+.|+.+++... .+|..++.++.+|..++.+.-
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~vE 45 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDVE 45 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhhh
Confidence 58999999999999999887765 569999999999999887643
No 230
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=30.97 E-value=1.1e+02 Score=29.32 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=40.0
Q ss_pred CCeEEEEEEceEEEEEEeCCceEEEEEecCCCeeehhhhhcCCCceeEEEEccceeEEeechhh
Q 002763 417 PTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTT 480 (883)
Q Consensus 417 ~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fGe~~ll~~~p~~~tv~a~~~~~l~~l~r~~ 480 (883)
.+.+|++++|.+.+-..++|+.+ ...+++||+|=--+ +.| .+-++.+.|..+.+.+..
T Consensus 48 tdE~FyqleG~~~l~v~d~g~~~-~v~L~eGd~flvP~---gvp--HsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 48 GEEFFYQLKGEMYLKVTEEGKRE-DVPIREGDIFLLPP---HVP--HSPQRPAGSIGLVIERKR 105 (159)
T ss_pred CceEEEEEcceEEEEEEcCCcEE-EEEECCCCEEEeCC---CCC--cccccCCCcEEEEEEeCC
Confidence 68899999999998766666433 35789999875322 222 334446778888887764
No 231
>PRK09108 type III secretion system protein HrcU; Validated
Probab=30.85 E-value=4.3e+02 Score=29.17 Aligned_cols=62 Identities=8% Similarity=0.141 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q 002763 276 REMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQM 337 (883)
Q Consensus 276 ~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri 337 (883)
...++.++..++..++.++++-.+..+.-..+...++.+-..+++++=.+...=++.++.|+
T Consensus 178 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rr 239 (353)
T PRK09108 178 AQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGER 239 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 34445555555555555555555555554433333333333344444444444444444443
No 232
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=30.26 E-value=1.4e+03 Score=29.95 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhhhhh------ccccCCcc--cCCchhhHHH------HHHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 002763 248 WIRYVTSMYWSITTLT------TVGYGDLH--PVNTREMVFD------ILFMLFNLGLTAYLIGNMTNLVVHGTSRTRK 312 (883)
Q Consensus 248 ~~~Y~~s~ywai~T~t------TVGYGDi~--p~t~~e~i~~------i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~ 312 (883)
-.+-.+++|..|+|.. +-|-||+- |........+ .|+.++-+++.-+++|.|...|....+.+++
T Consensus 2500 kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiIVLNLIFGVIIDTFaDLRsEKqk 2578 (2706)
T KOG3533|consen 2500 KERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEKQK 2578 (2706)
T ss_pred hhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhH
Confidence 4566788998888874 45667873 4333322211 1233333444556667777766665554443
No 233
>PRK08156 type III secretion system protein SpaS; Validated
Probab=29.25 E-value=5.5e+02 Score=28.46 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q 002763 279 VFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQM 337 (883)
Q Consensus 279 i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri 337 (883)
+...+..++..++.++++-.+..+.-..+...++.+-..+++++=.+...=++.++.|+
T Consensus 174 ~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~ 232 (361)
T PRK08156 174 WRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKR 232 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 33444444444444455544444443333333333333333333333344444444333
No 234
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=29.23 E-value=1.2e+02 Score=25.24 Aligned_cols=63 Identities=27% Similarity=0.380 Sum_probs=33.6
Q ss_pred ceEEEecCCCCccccEEEEccccHHHHHHHHhhhcCCCc---c----eeec-CCCCeeeeeee-----eecCCEEEE
Q 002763 809 ARVTIGCPEKGEVAGKLVLLPSTFQELLDIGEKKFGISP---A----KVLN-KGGAEVEDIEV-----IRDGDHLVF 872 (883)
Q Consensus 809 ~rvti~~p~~~~~~g~~~~~p~~~~~l~~~~~~~~~~~~---~----~~~~-~~~~~~~~~~~-----~~~~~~l~~ 872 (883)
.||||..+. +......+.-=-++.||++.-.+.++.+. . =.+. .+|..+++=.. |+|||.|+|
T Consensus 3 ~rVtv~~~~-~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGN-GRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT---EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCC-CcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 489999865 33444444444567788888777777532 1 1344 55555554433 789999986
No 235
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=28.91 E-value=1.1e+02 Score=34.46 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhhhccccC--CcccCCchhhHHHHHHHHHHHHH
Q 002763 249 IRYVTSMYWSITTLTTVGYG--DLHPVNTREMVFDILFMLFNLGL 291 (883)
Q Consensus 249 ~~Y~~s~ywai~T~tTVGYG--Di~p~t~~e~i~~i~~~l~g~~~ 291 (883)
.....+.++++++++|.||. |..--++..+++.++.|++|-+-
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~ 274 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCS 274 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCC
Confidence 44668889999999999995 44455667788888888888543
No 236
>PHA03239 envelope glycoprotein M; Provisional
Probab=28.38 E-value=3.7e+02 Score=30.33 Aligned_cols=55 Identities=13% Similarity=0.009 Sum_probs=29.6
Q ss_pred cccCCcccCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 002763 265 VGYGDLHPVNT-REMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQA 319 (883)
Q Consensus 265 VGYGDi~p~t~-~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~ 319 (883)
+.|.-+.-..+ ...-..+.+.++.++..++.+-.+......-.++..+|..++++
T Consensus 318 ~~Y~~v~v~a~~l~~~v~~~Laviail~l~~~ivRlvRa~~yHr~~~t~fy~~v~~ 373 (429)
T PHA03239 318 RLYDEIMIASPKLIQGAAGILAAFAVISIALAILRATRAYKFHKAANSKFLGQVAR 373 (429)
T ss_pred HHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444432333 44556666666666666666666655554444455556555544
No 237
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=27.64 E-value=83 Score=26.15 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=32.4
Q ss_pred cccHHHHHHHHhhhcCCCcce--ee-cCCCCeeeeeee-----eecCCEEEEEec
Q 002763 829 PSTFQELLDIGEKKFGISPAK--VL-NKGGAEVEDIEV-----IRDGDHLVFVSD 875 (883)
Q Consensus 829 p~~~~~l~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~-----~~~~~~l~~~~~ 875 (883)
..|+.||++..++++|+++.+ +. --+|...+|=.. |.||+.|+++-.
T Consensus 22 ~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 22 SMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred CCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 379999999999999998754 31 234444443333 678888887643
No 238
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=27.39 E-value=3.8e+02 Score=23.25 Aligned_cols=85 Identities=7% Similarity=0.041 Sum_probs=48.7
Q ss_pred HHHHhhhhhHHHHHhccchhhhhhhCCCcchhhhHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 002763 135 AWKYASSWLVFDVISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFAVHC 214 (883)
Q Consensus 135 ~~~Yl~~~f~iDlis~iP~~~~~~~~~~~~~~~~~l~~lRl~Rl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~h~ 214 (883)
-++|+-++.+-=+++.+||.+...-.-+....+.++-.+=+.++.=.+.+|-++.....- .|--...++..++.++-.
T Consensus 6 ~~~yviGFiLSiiLT~i~F~~v~~~~~~~~~~~~~i~~lA~iQi~VqL~~FLHm~~~~~~--~~n~~~l~ft~~i~~i~v 83 (94)
T TIGR02901 6 PWKHVNGFILSLLLTFLALWVALYSDLPLAMGLTIIIIFAFIQAGLQLIMFMHAGESEDG--KVQIYNIYYSAFIALVTV 83 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHHHHHHheeecCCccc--chHHHHHHHHHHHHHHHH
Confidence 467888887888899999998764322222334444455566666666677666533221 122233344444455556
Q ss_pred HHHHhhh
Q 002763 215 AGCFYYL 221 (883)
Q Consensus 215 ~aci~~~ 221 (883)
.+.+|-.
T Consensus 84 ~GSlWIm 90 (94)
T TIGR02901 84 FGSLWVM 90 (94)
T ss_pred HHHHHHh
Confidence 6777753
No 239
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=27.29 E-value=6e+02 Score=28.10 Aligned_cols=59 Identities=14% Similarity=0.083 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q 002763 279 VFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQM 337 (883)
Q Consensus 279 i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri 337 (883)
+...+..+++.++.++++-.+.+++-..+...++.+-..+++++=++...=++.++.|+
T Consensus 188 ~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~ 246 (358)
T PRK13109 188 ILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARL 246 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 44444444555555555555555544433333333333444444444444444444443
No 240
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=26.65 E-value=1.5e+02 Score=23.50 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=31.3
Q ss_pred ccEEEEc-cccHHHHHHHHhhhcCCCccee-ecCCCCeeee----eeeeecCCEEEEEe
Q 002763 822 AGKLVLL-PSTFQELLDIGEKKFGISPAKV-LNKGGAEVED----IEVIRDGDHLVFVS 874 (883)
Q Consensus 822 ~g~~~~~-p~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~l~~~~ 874 (883)
.|+.+.+ +.|+++|++ .+++++..+ +--+|.-|.. =..++|||++=+++
T Consensus 6 Ng~~~~~~~~tl~~Ll~----~l~~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 6 NGETLQTEATTLALLLA----ELDYEGNWLATAVNGELVHKEARAQFVLHEGDRIEILS 60 (65)
T ss_pred CCeEEEcCcCcHHHHHH----HcCCCCCeEEEEECCEEcCHHHcCccccCCCCEEEEEE
Confidence 4555555 348999985 567776544 3334444442 35799999998775
No 241
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=26.58 E-value=55 Score=32.86 Aligned_cols=41 Identities=17% Similarity=0.065 Sum_probs=25.7
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHhhcccccc
Q 002763 679 LDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETKA 719 (883)
Q Consensus 679 l~~ga~~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~~~~ 719 (883)
++.||-.|..|....||=++|.+.|+..+.+.|++.+....
T Consensus 2 le~ga~wn~id~~n~t~gd~a~ern~~rly~~lv~~gv~Se 42 (271)
T KOG1709|consen 2 LEYGAGWNFIDYENKTVGDLALERNQSRLYRRLVEAGVPSE 42 (271)
T ss_pred cccCCCccccChhhCCchHHHHHccHHHHHHHHHHcCCchh
Confidence 45666666666666666666666666666666666665544
No 242
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=26.22 E-value=6.4e+02 Score=27.72 Aligned_cols=61 Identities=8% Similarity=0.121 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q 002763 277 EMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQM 337 (883)
Q Consensus 277 e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri 337 (883)
..++..+..++..++.++++-.+.++.-..+...++.+-..+++++=.+...=++.++.|+
T Consensus 176 ~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~ 236 (342)
T TIGR01404 176 PIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKR 236 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 3344444455555555555444444443333333333333344444444444444444443
No 243
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=26.08 E-value=5.9e+02 Score=28.49 Aligned_cols=59 Identities=10% Similarity=-0.003 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q 002763 279 VFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQM 337 (883)
Q Consensus 279 i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri 337 (883)
+..++..++..++.++++-.+..++-..+...++.+-..+++++=++...=++.++.|+
T Consensus 186 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~ 244 (386)
T PRK12468 186 ALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRI 244 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 33444444444444444444455444333333333333444444444444444444444
No 244
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=26.07 E-value=1.5e+02 Score=23.58 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=31.3
Q ss_pred ccEEEEccc--cHHHHHHHHhhhcCCCcceeecCCCCee-e----eeeeeecCCEEEEEe
Q 002763 822 AGKLVLLPS--TFQELLDIGEKKFGISPAKVLNKGGAEV-E----DIEVIRDGDHLVFVS 874 (883)
Q Consensus 822 ~g~~~~~p~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~l~~~~ 874 (883)
.|+-..+|. |+.||++ .+++....|.=+=.++| . +=..++|||++-+++
T Consensus 6 Ng~~~~~~~~~tl~~ll~----~l~~~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 6 NDQPMQCAAGQTVHELLE----QLNQLQPGAALAINQQIIPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred CCeEEEcCCCCCHHHHHH----HcCCCCCcEEEEECCEEeChHHcCccccCCCCEEEEEE
Confidence 577777765 7999995 46665433322333444 3 344799999998875
No 245
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=25.72 E-value=1.7e+02 Score=31.62 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccch
Q 002763 169 LFNMLRLWRLRRVSALFSRLEKDRNY 194 (883)
Q Consensus 169 ~l~~lRl~Rl~r~~~~~~~l~~~~~~ 194 (883)
-+-+||++||.|++++|+.......+
T Consensus 322 SlAILRViRLVRVFRIFKLSRHSkGL 347 (507)
T KOG1545|consen 322 SLAILRVIRLVRVFRIFKLSRHSKGL 347 (507)
T ss_pred hHHHHHHHHHHHHhhheeeccccchH
Confidence 46689999999999999766554443
No 246
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=25.53 E-value=3.1e+02 Score=21.28 Aligned_cols=13 Identities=0% Similarity=0.120 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q 002763 312 KFRDTIQAASSFA 324 (883)
Q Consensus 312 ~~~~~~~~~~~~m 324 (883)
..+++++.+-+.+
T Consensus 43 ~~eqKLDrIIeLL 55 (58)
T PF13314_consen 43 SMEQKLDRIIELL 55 (58)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666665544
No 247
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=25.50 E-value=79 Score=25.49 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=29.3
Q ss_pred cccHHHHHHHHhhhcCCCcce--------eecCCCCeeeeeeeeecCCEEEEE
Q 002763 829 PSTFQELLDIGEKKFGISPAK--------VLNKGGAEVEDIEVIRDGDHLVFV 873 (883)
Q Consensus 829 p~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~ 873 (883)
-.|+.+|++..+++.|+++.+ ++ +|+..+.|-. |.||+.|.++
T Consensus 19 ~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L-~d~~tL~~~~-i~~~stl~l~ 69 (71)
T cd01808 19 DASVKDFKEAVSKKFKANQEQLVLIFAGKIL-KDTDTLTQHN-IKDGLTVHLV 69 (71)
T ss_pred CChHHHHHHHHHHHhCCCHHHEEEEECCeEc-CCCCcHHHcC-CCCCCEEEEE
Confidence 368999999999999987642 33 2334445554 5777777765
No 248
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=25.39 E-value=1.3e+02 Score=24.63 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=22.7
Q ss_pred CeEEEEEEceEEEEEEeCCceEEEEEecCCCeee
Q 002763 418 TDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICG 451 (883)
Q Consensus 418 ~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fG 451 (883)
+++.+|++|+|.+... +|.. ..+++||.|=
T Consensus 26 ~E~~~vleG~v~it~~-~G~~---~~~~aGD~~~ 55 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDE-DGET---VTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEEEEEET-TTEE---EEEETTEEEE
T ss_pred CEEEEEEEeEEEEEEC-CCCE---EEEcCCcEEE
Confidence 7888999999988753 4433 5688999764
No 249
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=25.36 E-value=6.8e+02 Score=27.71 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002763 276 REMVFDILFMLFNLGLTAYLIGNMTNLVV 304 (883)
Q Consensus 276 ~e~i~~i~~~l~g~~~~a~~i~~i~~~~~ 304 (883)
...+...+..++..++.++++-.+..++-
T Consensus 183 ~~~~~~~~~~l~~~~~~~~~via~~D~~~ 211 (359)
T PRK05702 183 LGHALDLVLKLLLLVVLALLVIAAIDVPF 211 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555444444443
No 250
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=25.34 E-value=4.2e+02 Score=30.64 Aligned_cols=55 Identities=16% Similarity=0.430 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhhheeeecCCCCCccccccCCcccccchhHHHHHH-HHHHhhhhhccccCCcccCCchhhHHHHHHHH
Q 002763 208 TLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTS-MYWSITTLTTVGYGDLHPVNTREMVFDILFML 286 (883)
Q Consensus 208 ~l~~~h~~aci~~~i~~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~s-~ywai~T~tTVGYGDi~p~t~~e~i~~i~~~l 286 (883)
+.++-+|..+++|... +.|...+-| ++|+.. .|++......|.+..+...
T Consensus 123 i~~~~~W~~~~FYv~~----------------------elw~~~vvS~lFW~fa-------ndi~t~~qakRfy~l~~~g 173 (472)
T TIGR00769 123 IAILRIWSFALFYVMA----------------------ELWGSVVLSLLFWGFA-------NQITTIDEAKRFYALFGLG 173 (472)
T ss_pred HHHHhhhhHHHHHHHH----------------------HHHHHHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHHH
Confidence 3355678888888664 457778888 999987 6788888999999988877
Q ss_pred HHHHH
Q 002763 287 FNLGL 291 (883)
Q Consensus 287 ~g~~~ 291 (883)
.++..
T Consensus 174 anlg~ 178 (472)
T TIGR00769 174 ANVAL 178 (472)
T ss_pred HHHHH
Confidence 55543
No 251
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=25.32 E-value=58 Score=27.62 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=29.8
Q ss_pred ccHHHHHHHHhhhcCCCccee------------ecCCCCeeeeee--eeecCCEEEEEe
Q 002763 830 STFQELLDIGEKKFGISPAKV------------LNKGGAEVEDIE--VIRDGDHLVFVS 874 (883)
Q Consensus 830 ~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~~--~~~~~~~l~~~~ 874 (883)
.|+.||++...+++.--..++ +.-+|-.|+.-+ .++|||.+.++.
T Consensus 25 ~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 25 KTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred CCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEeC
Confidence 589999999999875101112 333555555445 788999888764
No 252
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=25.03 E-value=7.1e+02 Score=27.42 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q 002763 276 REMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQM 337 (883)
Q Consensus 276 ~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri 337 (883)
...+..++..++..++.++++-.+.++.-..+...++.+-..+++++=.+...=++.++.|+
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rr 237 (347)
T TIGR00328 176 ITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRI 237 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 33444555555555555555544555444333333333333344444444444444444443
No 253
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=24.97 E-value=95 Score=25.26 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=36.1
Q ss_pred cccHHHHHHHHhhhcCC---CcceeecCCCCeeee---eeeeecCCEEEEEe
Q 002763 829 PSTFQELLDIGEKKFGI---SPAKVLNKGGAEVED---IEVIRDGDHLVFVS 874 (883)
Q Consensus 829 p~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 874 (883)
+.|+.||++.-.+++.- .....+.-+|.-|++ =..++|||.+.++.
T Consensus 21 ~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 21 GSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAILP 72 (77)
T ss_dssp TSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEEE
T ss_pred CCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEEC
Confidence 67999999999988852 123356677888888 78899999999875
No 254
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=24.91 E-value=1.1e+03 Score=27.06 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002763 280 FDILFMLFNLGLTAYLIGNMTNLVV 304 (883)
Q Consensus 280 ~~i~~~l~g~~~~a~~i~~i~~~~~ 304 (883)
...++.+.|.++.++|...+.....
T Consensus 170 l~l~i~~~g~Glv~iP~~l~~~~~~ 194 (471)
T PF04791_consen 170 LFLFIILLGYGLVAIPRDLWRSSNS 194 (471)
T ss_pred HHHHHHHHhccHHHHHHHHHHhccc
Confidence 3445567788888888887755443
No 255
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=24.88 E-value=5.8e+02 Score=28.15 Aligned_cols=62 Identities=10% Similarity=0.137 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q 002763 276 REMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQM 337 (883)
Q Consensus 276 ~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri 337 (883)
...+...+..+++.++.++++-.+..++-..+...++.+-..+++++=.+...=++.++.|+
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rr 237 (349)
T PRK12721 176 LPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKR 237 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 33344555555555555555544555544333333333333444444444444444444444
No 256
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=24.66 E-value=1.6e+02 Score=23.56 Aligned_cols=49 Identities=22% Similarity=0.404 Sum_probs=33.2
Q ss_pred ccEEEEccc---cHHHHHHHHhhhcCCCccee-ecCCCCeeeee----eeeecCCEEEEEe
Q 002763 822 AGKLVLLPS---TFQELLDIGEKKFGISPAKV-LNKGGAEVEDI----EVIRDGDHLVFVS 874 (883)
Q Consensus 822 ~g~~~~~p~---~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~l~~~~ 874 (883)
.|+-..+|+ |+.|||+ .+|+++..| +--+|.-|..- ..++|||++=+++
T Consensus 6 NG~~~~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 6 NGNQIEVPESVKTVAELLT----HLELDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred CCEEEEcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 566666753 6899985 688887665 43444444433 5789999998775
No 257
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=23.92 E-value=21 Score=41.15 Aligned_cols=54 Identities=35% Similarity=0.547 Sum_probs=33.2
Q ss_pred HHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 002763 536 AALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPN 589 (883)
Q Consensus 536 Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~ 589 (883)
|+..+-...+-.|++.|+.++..|..|.||+|+++..|..++.+.++....+.+
T Consensus 403 ~~~~~~ss~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~~ 456 (605)
T KOG3836|consen 403 AALNNSSSLVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAIS 456 (605)
T ss_pred hhhcCCccceeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhhhh
Confidence 333444445555666666677777777777777777777777766665444333
No 258
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=23.79 E-value=1e+02 Score=25.03 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=33.0
Q ss_pred cccHHHHHHHHhhhcCCCcce-eecCCCCeeeeeee-----eecCCEEEEEec
Q 002763 829 PSTFQELLDIGEKKFGISPAK-VLNKGGAEVEDIEV-----IRDGDHLVFVSD 875 (883)
Q Consensus 829 p~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~l~~~~~ 875 (883)
-.|+++|++.-.++.|+++.+ -+.-+|...+|=.. |.||+.|.++-.
T Consensus 20 ~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 20 TDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 368999999999999999864 22244555543222 678888887753
No 259
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=23.77 E-value=1.7e+02 Score=23.02 Aligned_cols=50 Identities=24% Similarity=0.405 Sum_probs=31.1
Q ss_pred cccEEEEccc--cHHHHHHHHhhhcCCCcceeecCCCCeeee----eeeeecCCEEEEEe
Q 002763 821 VAGKLVLLPS--TFQELLDIGEKKFGISPAKVLNKGGAEVED----IEVIRDGDHLVFVS 874 (883)
Q Consensus 821 ~~g~~~~~p~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~ 874 (883)
..|+.+.+|. |+.||++. +|+.+.-++--+|.-|.. =..++|||.+-++.
T Consensus 5 vNg~~~~~~~~~tl~~ll~~----l~~~~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 5 LNQQTLSLPDGATVADALAA----YGARPPFAVAVNGDFVARTQHAARALAAGDRLDLVQ 60 (65)
T ss_pred ECCEEEECCCCCcHHHHHHh----hCCCCCeEEEECCEEcCchhcccccCCCCCEEEEEe
Confidence 3677778874 78888863 455433234344444431 34689999998774
No 260
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=23.44 E-value=1.6e+02 Score=27.09 Aligned_cols=48 Identities=17% Similarity=0.378 Sum_probs=33.8
Q ss_pred hchhhccCCCCeE-EecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCee
Q 002763 398 EMKAEYFPPKEDV-ILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (883)
Q Consensus 398 ~~~~~~~~~ge~I-~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~f 450 (883)
..+...++||+.+ .+--...++.|+|++|...+.. ++++ ..+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~--~~~~---~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI--GGEE---VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE--CCEE---EEecCCCEE
Confidence 3556777888885 4445557899999999998876 3333 356788754
No 261
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=22.92 E-value=1.7e+02 Score=28.62 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=39.9
Q ss_pred CCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCeeehhhhhcCCCceeEEEEccceeEEeechhh
Q 002763 415 EAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTT 480 (883)
Q Consensus 415 e~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fGe~~ll~~~p~~~tv~a~~~~~l~~l~r~~ 480 (883)
+..+.+|++++|.+.+-..++|+.+ ...+++||+|=--+ +.|. +-++.+.|..+.+.+..
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~-~v~L~eGd~fllP~---gvpH--sP~r~~~tv~LviE~~r 111 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR-DVPIREGEMFLLPP---HVPH--SPQREAGSIGLVIERKR 111 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee-eEEECCCCEEEeCC---CCCc--CCccCCCeEEEEEEeCC
Confidence 4568899999999988776666422 35789999875322 2222 23445778888877654
No 262
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=22.35 E-value=2.3e+02 Score=22.99 Aligned_cols=44 Identities=27% Similarity=0.323 Sum_probs=30.1
Q ss_pred ccHHHHHHHHhhhcCC--Ccce-eecCCCCeeeeee-----eeecCCEEEEE
Q 002763 830 STFQELLDIGEKKFGI--SPAK-VLNKGGAEVEDIE-----VIRDGDHLVFV 873 (883)
Q Consensus 830 ~~~~~l~~~~~~~~~~--~~~~-~~~~~~~~~~~~~-----~~~~~~~l~~~ 873 (883)
.|+.+|++.-.++.|+ ++.+ .+.-+|...+|=. =|.||+.|+++
T Consensus 21 ~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 21 DTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred CcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999998 7653 2333455444322 26788888765
No 263
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.12 E-value=1.6e+02 Score=31.32 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=51.4
Q ss_pred CCCCCceEEEecCCCCccccEEEEccccHHHHHHHHhhhcCCCcce----eecCCCCeeeeeee----------eecCCE
Q 002763 804 PGINSARVTIGCPEKGEVAGKLVLLPSTFQELLDIGEKKFGISPAK----VLNKGGAEVEDIEV----------IRDGDH 869 (883)
Q Consensus 804 ~~~~~~rvti~~p~~~~~~g~~~~~p~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~~~~~ 869 (883)
+..+.+||.+-|.++...+..+|-+-.|.-++.++-.+|-|+.+++ .+.+||.+=|==++ |-|||-
T Consensus 332 ~l~pdkrvk~l~~~~~v~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs 411 (418)
T KOG2982|consen 332 HLIPDKRVKALNSGPKVIASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDS 411 (418)
T ss_pred ccCchheeeeeccCCccccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCE
Confidence 4455679999988776556668889999999999999999998876 58888876543222 667776
Q ss_pred EE
Q 002763 870 LV 871 (883)
Q Consensus 870 l~ 871 (883)
..
T Consensus 412 ~l 413 (418)
T KOG2982|consen 412 FL 413 (418)
T ss_pred ee
Confidence 44
No 264
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=21.82 E-value=3.8e+02 Score=22.65 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=44.9
Q ss_pred CceEEEe--cCCCCccccEEEEccccHHHHHHHHhhhcCCCcce-eecCCCCeeeeeee-----eecCCEEEEEe
Q 002763 808 SARVTIG--CPEKGEVAGKLVLLPSTFQELLDIGEKKFGISPAK-VLNKGGAEVEDIEV-----IRDGDHLVFVS 874 (883)
Q Consensus 808 ~~rvti~--~p~~~~~~g~~~~~p~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~l~~~~ 874 (883)
+..++|+ .+ .+...---|..-.++++|.+.-+++.|+++.. -+.=+|.+|++=+. |.|||.+.++.
T Consensus 9 ~~~i~I~v~~~-~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l 82 (87)
T cd01763 9 SEHINLKVKGQ-DGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVML 82 (87)
T ss_pred CCeEEEEEECC-CCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 4566666 33 22222222344678999999999999998855 35567888886555 67888887664
No 265
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=21.76 E-value=18 Score=41.55 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=24.6
Q ss_pred hHHHHHHhCCHHHHHHHHHcCCCccccCCCCChHHHHHHHcCCH
Q 002763 629 FACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNV 672 (883)
Q Consensus 629 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~ 672 (883)
.++........+.+..++.++...+..+.+|.|+||.+...++.
T Consensus 139 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~g~t~L~~tl~~~~~ 182 (503)
T KOG0513|consen 139 ALRILVSGDKYSGAEVLLTKYEIADAREVLGNTKLHLTLTKENL 182 (503)
T ss_pred ceeeeecCccccceeecccccccchhhhhcCCceeeeeccCCCc
Confidence 33444445555555555554444445555667777776666665
No 266
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=21.48 E-value=5.9e+02 Score=22.79 Aligned_cols=56 Identities=7% Similarity=-0.060 Sum_probs=35.9
Q ss_pred HHHHhhhhhHHHHHhccchhhhhhhCCCcchhhhHHHHHHHHHHHHHHHHHHhhhh
Q 002763 135 AWKYASSWLVFDVISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEK 190 (883)
Q Consensus 135 ~~~Yl~~~f~iDlis~iP~~~~~~~~~~~~~~~~~l~~lRl~Rl~r~~~~~~~l~~ 190 (883)
.+.|+-++.+-=+++++||.+...-.-+....+.++-.+=+.++.-.+.+|-++..
T Consensus 25 ~k~yviGFiLSiiLT~I~F~~V~~~~l~~~~~~~~I~~lAvvQi~VqL~yFLHm~~ 80 (110)
T TIGR02908 25 MKKQIVTFALMIFLTLIAFFAVMLDEIDKWFVIPFILLLAAVQVAFQLYYFMHMKD 80 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHheeeCC
Confidence 45688777777889999999887532222233444555566666666666666653
No 267
>PRK06298 type III secretion system protein; Validated
Probab=21.38 E-value=9.1e+02 Score=26.71 Aligned_cols=17 Identities=24% Similarity=0.012 Sum_probs=7.8
Q ss_pred hhHHHHHHhcCCHHHHHHHHH
Q 002763 530 PLSLCFAALRGDDLLLHQLLK 550 (883)
Q Consensus 530 ~t~L~~Aa~~g~~~~v~~Ll~ 550 (883)
+..|..|++ +++.++.+
T Consensus 327 P~ely~AVA----~IL~~v~~ 343 (356)
T PRK06298 327 PESTYEAIG----EILLYITS 343 (356)
T ss_pred CHHHHHHHH----HHHHHHHH
Confidence 444555553 34444443
No 268
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=21.23 E-value=2.3e+02 Score=22.55 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=29.7
Q ss_pred cccHHHHHHHHhhhcCCCcce--eecCCCCeeeeeee-----eecCCEEEEE
Q 002763 829 PSTFQELLDIGEKKFGISPAK--VLNKGGAEVEDIEV-----IRDGDHLVFV 873 (883)
Q Consensus 829 p~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~l~~~ 873 (883)
..|+.+|++..+++.|+++.. +. -+|...+|=.. |.||+.|.++
T Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 20 EITVLDLKEKIAEEVGIPVEQQRLI-YSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred CCcHHHHHHHHHHHHCcCHHHeEEE-ECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 479999999999999998743 32 23544443322 6677777665
No 269
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=21.03 E-value=1e+02 Score=25.07 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=29.4
Q ss_pred ccHHHHHHHHhhhcCCCcce-eecCCCCee------eeeeeeecCCEEEEEe
Q 002763 830 STFQELLDIGEKKFGISPAK-VLNKGGAEV------EDIEVIRDGDHLVFVS 874 (883)
Q Consensus 830 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~l~~~~ 874 (883)
.|+++|++..+++.|+++.. -+--.|.+. .|.. |.+|+.|.++-
T Consensus 21 ~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~-i~~~~~l~l~~ 71 (74)
T cd01807 21 ESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS-IGPNAKLNLVV 71 (74)
T ss_pred CcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCC-CCCCCEEEEEE
Confidence 78999999999999998853 122234443 3333 56677777663
No 270
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=20.98 E-value=1.7e+02 Score=26.89 Aligned_cols=69 Identities=10% Similarity=0.056 Sum_probs=39.5
Q ss_pred hhhccCCCCeEEecCCCCCeEEEEEEceEEEEEEeCCceEEEEEecCCCeeehhhhhcCCCceeEEEEccceeEEee
Q 002763 400 KAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (883)
Q Consensus 400 ~~~~~~~ge~I~~~ge~~~~ly~i~~G~v~i~~~~~~~~~~i~~l~~g~~fGe~~ll~~~p~~~tv~a~~~~~l~~l 476 (883)
....++||...-.--....++++|++|++.+....+|++ ..+++||.+--- .+.|. .+++.++++++.+
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~---~~L~aGD~i~~~---~~~~H--~~~N~e~~~~l~v 106 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEV---HPIRPGTMYALD---KHDRH--YLRAGEDMRLVCV 106 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEE---EEeCCCeEEEEC---CCCcE--EEEcCCCEEEEEE
Confidence 345678886543322222469999999999862222433 568899986522 23333 3333366665543
No 271
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=20.78 E-value=2.2e+02 Score=22.99 Aligned_cols=49 Identities=27% Similarity=0.479 Sum_probs=32.9
Q ss_pred ccEEEEccc--cHHHHHHHHhhhcCCCcceeecCCCCee-e----eeeeeecCCEEEEEe
Q 002763 822 AGKLVLLPS--TFQELLDIGEKKFGISPAKVLNKGGAEV-E----DIEVIRDGDHLVFVS 874 (883)
Q Consensus 822 ~g~~~~~p~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~l~~~~ 874 (883)
.||-+.+|. |+.+|| +++|+++..+.-+-+++| - .=..+++||++=+|+
T Consensus 8 ng~~~e~~~~~tv~dLL----~~l~~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 8 NGKEVEIAEGTTVADLL----AQLGLNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred CCEEEEcCCCCcHHHHH----HHhCCCCceEEEEECCEEccchhhhhccccCCCEEEEEE
Confidence 367777766 899998 579998766544444444 3 345677888887664
No 272
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=20.76 E-value=9.3e+02 Score=24.79 Aligned_cols=97 Identities=8% Similarity=0.072 Sum_probs=58.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhh----hccccCCCC---CceehhhHhHHHHHHhhheeeeEEEEeCCeeEEEeC
Q 002763 58 SPYDRRYRVWETYLVLLVIYTAWASPFE----FGFLRKPQR---PLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDC 130 (883)
Q Consensus 58 ~P~s~~~~~w~~~~~~~~~~~~~~~p~~----~~f~~~~~~---~~~~i~~~~~~~F~~Di~l~f~~ay~~~~~~~~v~~ 130 (883)
||--+....|..++.++.+...+..... ..|..+... ..+.--.+..+.+.++...++.++++..++.-++-|
T Consensus 2 hpvYR~sqf~~~~vs~la~~~L~yFi~~ki~~~~FHgNLK~LLi~YF~sillfs~~~~~~f~yh~~~Pff~~~~CdLiI~ 81 (236)
T PF02175_consen 2 HPVYRISQFYTFIVSILAVPPLIYFIIKKILKLSFHGNLKFLLIGYFGSILLFSLVLCFAFGYHFLIPFFVTSKCDLIID 81 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCccHHHHHHHHHHHHHHHHHHHHHHHHhheeeeeecCCCceEEEc
Confidence 4555677889988888877766643322 233222110 011222333455677778899999888888888888
Q ss_pred HHHHHHHHhhhhhHHHHHhccchh
Q 002763 131 PKQIAWKYASSWLVFDVISTIPSE 154 (883)
Q Consensus 131 ~~~i~~~Yl~~~f~iDlis~iP~~ 154 (883)
|..-+.--+..-|.+-+-..+|+-
T Consensus 82 ~~~~K~~h~~~~flmT~~ml~Pig 105 (236)
T PF02175_consen 82 PTLFKYGHLTGLFLMTIPMLFPIG 105 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 876555445555566666666643
No 273
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.70 E-value=2.2e+02 Score=19.47 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHCCCC-----HHHHHHHHHHH
Q 002763 316 TIQAASSFAQRNQLP-----IRLQDQMLAHL 341 (883)
Q Consensus 316 ~~~~~~~~m~~~~lp-----~~l~~ri~~~~ 341 (883)
++.++.++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356788888998888 67888887764
No 274
>PHA01757 hypothetical protein
Probab=20.31 E-value=4.3e+02 Score=21.81 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=31.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 002763 274 NTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAAS 321 (883)
Q Consensus 274 t~~e~i~~i~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 321 (883)
+..|-.+--|+.+.|.+.-.+++|.+..+.... .+.+.|.+.+++++
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hlynek-~~nenf~~AvD~m~ 50 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHLYNEK-QRNENFAKAIDQMS 50 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hhhHhHHHHHHHHH
Confidence 345556667788888888899999888776443 34455666555544
No 275
>PRK07668 hypothetical protein; Validated
Probab=20.21 E-value=3.4e+02 Score=28.34 Aligned_cols=62 Identities=8% Similarity=0.122 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHhhhccccchHHHHHhhchHHHHHHHHHH
Q 002763 311 RKFRDTIQAASSFAQRNQLPIRLQDQML-AHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHY 372 (883)
Q Consensus 311 ~~~~~~~~~~~~~m~~~~lp~~l~~ri~-~~~~~~~~~~~~~~~~~~~l~~Lp~~lr~~i~~~ 372 (883)
++.++-+.++..|++..++|++-++.+. ++...-...+++|.+.++++.+=|++..+++...
T Consensus 4 keNeefl~~L~~yL~~~glseeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~sPk~yA~EL~~~ 66 (254)
T PRK07668 4 KEGRKFLDDTRVYLIAKGIKEEDIESFLEDAELHLIEGEKDGKTVEDIFGDSPKEYANELVKE 66 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCHHHHHHHHhcc
Confidence 4566677888899999999988877775 4555555667789999999998676666665544
No 276
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=20.11 E-value=8.5e+02 Score=27.54 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=9.9
Q ss_pred CCceehhhHhHHHHHHhhhe
Q 002763 94 RPLSVIDNVVNGFFAVDIIL 113 (883)
Q Consensus 94 ~~~~~i~~~~~~~F~~Di~l 113 (883)
..|.++|.++.++.++=+++
T Consensus 242 ~~WN~~e~~ii~ls~~~i~~ 261 (425)
T PF08016_consen 242 SFWNWLELLIILLSLAVIVL 261 (425)
T ss_pred hcCcHHHHHHHHHHHHHHHH
Confidence 34555666555444444433
No 277
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=20.11 E-value=1.9e+02 Score=25.74 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHHhhhc------------cccchHHHHHhhchHHHHHHHHHHHHHh
Q 002763 328 QLPIRLQDQMLAHLCLKFRTD------------SEGLQQQETLDSLPKAIRSSISHYLFYS 376 (883)
Q Consensus 328 ~lp~~l~~ri~~~~~~~~~~~------------~~~~~~~~~l~~Lp~~lr~~i~~~l~~~ 376 (883)
-||.+++.++..-....-+.. ...--..++|..||+.||.++..+....
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 589999999865433221110 0112236899999999999997665443
Done!