Query 002763
Match_columns 883
No_of_seqs 603 out of 5439
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 22:01:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002763.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_108-112//hhsearch_pdb/002763hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 1.0 1 1 337.4 5.8 345 57-505 3-351 (355)
2 1oy3_D Transcription factor in 1.0 1 1 256.2 21.2 196 523-718 3-251 (282)
3 3utm_A Tankyrase-1; tankyrase, 1.0 1 1 256.1 24.5 211 522-736 51-320 (351)
4 2xai_A ASB-9, ankyrin repeat a 1.0 1 1 254.2 24.8 206 527-737 1-207 (261)
5 3ljn_A Hypothetical protein; a 1.0 1 1 253.0 20.9 192 525-718 49-270 (364)
6 2fo1_E LIN-12 protein; beta-ba 1.0 1 1 251.1 20.9 196 523-718 160-372 (373)
7 3d9h_A CDNA FLJ77766, highly s 1.0 1 1 250.7 25.4 209 524-737 54-263 (285)
8 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 249.3 23.2 190 528-717 178-369 (437)
9 4b93_B Ankyrin repeat domain-c 1.0 1 1 249.2 16.0 176 528-703 51-229 (269)
10 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 247.9 23.9 193 525-717 208-402 (437)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=1.00 E-value=1 Score=337.35 Aligned_cols=345 Identities=17% Similarity=0.222 Sum_probs=258.3
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCEEHHHHHHHHHHHHHHEEEEEEEEECCEEEEEECHHHH
Q ss_conf 87898348988899999999999875131002247--8998320245767999872430105889948904998097899
Q 002763 57 VSPYDRRYRVWETYLVLLVIYTAWASPFEFGFLRK--PQRPLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQI 134 (883)
Q Consensus 57 i~P~s~~~~~w~~~~~~~~i~~~~~~p~~~~f~~~--~~~~~~~i~~~~~~~F~~Di~l~f~~a~~~~~~~~~v~~~~~i 134 (883)
+.|+|+.+.+.. +++++.++++...+...... ....+..++.++.++|++|+++|+..+ ++
T Consensus 3 ~~p~s~~f~~~~---~~~i~ls~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~------------~~-- 65 (355)
T 3beh_A 3 VLPFLRIYAPLN---AVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR------------RA-- 65 (355)
T ss_dssp ----CCSSSSHH---HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CS--
T ss_pred CCCHHHHHHHHH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------CC--
T ss_conf 884367999999---9999999999999736133256899999989677799999998901212------------32--
Q ss_pred HHHHH-HHHHHHHHHHC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99985-44568787712-65013432089962244589999999999799999864510121279999979989999999
Q 002763 135 AWKYA-SSWLVFDVIST-IPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFAV 212 (883)
Q Consensus 135 ~~~yl-~~~f~iDlis~-iP~~~~~~~~~~~~~~~~~l~~lRl~Rl~ri~~~~~~l~~~~~~~~~~~~~~~li~~~l~~~ 212 (883)
.+.|. ..|.++|++++ +|++..... ..+..+++|++|++|+.|..+.++.+..... .....+..+++.+++++
T Consensus 66 ~~~~~~~~~~i~Dl~~i~~p~~~~~~~---~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~--~~~~~l~~~~~~~~~~~ 140 (355)
T 3beh_A 66 GVVRDRTPKIAIDVLAVLVPLAAFLLD---GSPDWSLYCAVWLLKPLRDSTFFPVLGRVLA--NEARNLIGVTTLFGVVL 140 (355)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHSC---CSGGGGGGGGGGGSHHHHTCSSHHHHHHHHH--HTHHHHHHHHHHHHHHH
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 341033832587999898899999833---5036789999999999998899999999999--99999999999999999
Q ss_pred HHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999860400020588887422345886456403678889999876554124347866578202589999999989999
Q 002763 213 HCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLT 292 (883)
Q Consensus 213 h~~ac~~y~i~~~~~~~~~~wi~~~~~~~~~~~~~~~~Y~~s~ywai~TltTvGYGDi~p~t~~e~i~~i~~~l~g~~l~ 292 (883)
+++||++|.++.. .+++.+.+|.+|+||+++|||||||||++|.|..|+++++++|++|++++
T Consensus 141 ~~~a~~~~~~e~~-----------------~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~ 203 (355)
T 3beh_A 141 FAVALAAYVIERD-----------------IQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIF 203 (355)
T ss_dssp HHHHHHHHHHHTT-----------------TCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-----------------CCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999875367-----------------78843220999999998643445899878898219999999999999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHH
Q ss_conf 99999999999710166999999999999999987999899999999999976620235417799943419989888999
Q 002763 293 AYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHY 372 (883)
Q Consensus 293 a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~~~~~~~~~~~~~~~~~~~l~~Lp~~lr~~i~~~ 372 (883)
++++|.+++.+....++ + ++.
T Consensus 204 ~~~~~~i~~~~~~~~~~--------------------------~--~~~------------------------------- 224 (355)
T 3beh_A 204 GLWAGILATGFYQEVRR--------------------------G--DFV------------------------------- 224 (355)
T ss_dssp HHHHHHHHHHHHHHHHH--------------------------H--HHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHHH--------------------------H--HHC-------------------------------
T ss_conf 99999999998999988--------------------------7--650-------------------------------
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHCHHHCCCCCCEEEECCCCCCEEEEEEECEEEEEEEECCCEEEEEEECCCCEEEH
Q ss_conf 89957311022336898899999974001124898718962888983999997239999971791589899339993421
Q 002763 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGE 452 (883)
Q Consensus 373 l~~~~i~~v~lF~~~s~~~l~~l~~~~~~~~~~~~e~i~~~ge~~~~ly~i~~G~v~~~~~~~~~~~~i~~l~~g~~fGe 452 (883)
...+.++++++|++++++.+.++...++.+.|+|||.|++|||.++++|+|.+|.++++... ...+++|++|||
T Consensus 225 ~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~l~~G~~fGe 298 (355)
T 3beh_A 225 RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGE 298 (355)
T ss_dssp HHHC----------------------------------------------------------------------------
T ss_pred CCCHHHHCCCCCCCCCHHHHHHHHHHCEEEEECCCCEEEECCCCCCEEEEEEEEEEEEEECC------EEEECCCCEEEE
T ss_conf 15212104622112999999999985368897979999928995765999996489999888------048989999932
Q ss_pred HHHHCCCCCEEEEEECCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 65635899121999845236873034558989862465137898988753102
Q 002763 453 IGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKD 505 (883)
Q Consensus 453 ~~~l~~~~~~~t~~a~~~~~l~~l~r~~f~~~i~~~~~~~~~i~~~l~~~lk~ 505 (883)
.+++.+.|++++++|.++|+++++++++|.++++++|+....+.+.+.+++++
T Consensus 299 ~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~ 351 (355)
T 3beh_A 299 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGA 351 (355)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHCCCCCCEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 69957999616999986089999859999999987989999999999998875
No 2
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=1.00 E-value=1 Score=256.17 Aligned_cols=196 Identities=20% Similarity=0.204 Sum_probs=182.3
Q ss_pred HCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 40887731688999862999999999986999---987889999599999971999999999819999987899999878
Q 002763 523 ARGRMDLPLSLCFAALRGDDLLLHQLLKRGLD---PNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPL 599 (883)
Q Consensus 523 ~~~~~d~~t~L~~Aa~~g~~~~v~~Ll~~g~d---~n~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL 599 (883)
+..+.+|.|+||.|+..|+.++++.|++.|++ ++..|..|+||||+||..|+.+++++|+++|++++.+|..|.|||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 76389998099999976878899999854777431006478898799999986999999999986999887798999999
Q ss_pred HHHHHCCCHHHHHHHHHCCCC-----------------------------------------------CCCC--CCCHHH
Q ss_conf 999982969999999983999-----------------------------------------------8999--963368
Q 002763 600 WEAMLGGHENVIKLLMENHAD-----------------------------------------------INSG--DVGHFA 630 (883)
Q Consensus 600 ~~A~~~g~~~~v~~Ll~~ga~-----------------------------------------------~~~~--d~~~~l 630 (883)
|+|+..++.+++++|++.|++ ++.. ++.+++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 99987388405576423477772246777752343458501100222013565300000233555405777678996899
Q ss_pred HHHHHHCCHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Q ss_conf 899971999999999973998433589-9970889999819999999998499999999999999889999749998999
Q 002763 631 CTAAEQNNLELLKEIVCYGGDVTRQRN-NGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKC 709 (883)
Q Consensus 631 ~~a~~~~~~~~~~~Ll~~g~d~~~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~~ga~i~~~d~~G~Tpl~~A~~~~~~~i~~ 709 (883)
+.|+..++.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..++.++++
T Consensus 163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~ 242 (282)
T 1oy3_D 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHH
T ss_conf 99997499999999998389878888778968999998839899999999759998664469997899999849917999
Q ss_pred HHHHCCCCC
Q ss_conf 985021122
Q 002763 710 IFQSCKETK 718 (883)
Q Consensus 710 ~L~~~~~~~ 718 (883)
+|+++|+..
T Consensus 243 ~Ll~~ga~~ 251 (282)
T 1oy3_D 243 LLRAHGAPE 251 (282)
T ss_dssp HHHHTTCCC
T ss_pred HHHHCCCCC
T ss_conf 999849985
No 3
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=256.05 Aligned_cols=211 Identities=22% Similarity=0.180 Sum_probs=188.8
Q ss_pred HHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 74088773168899986299999999998699998788999959999997199999999981999998789999987899
Q 002763 522 LARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWE 601 (883)
Q Consensus 522 l~~~~~d~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~ 601 (883)
+...+.+|.|+||.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+
T Consensus 51 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~ 130 (351)
T 3utm_A 51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE 130 (351)
T ss_dssp CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 65579999889999998599999999997699997617999808999997788999999997799999778889989999
Q ss_pred HHHCCCHHHHHHHHHCCCCCCCCC--------------------------------------------------------
Q ss_conf 998296999999998399989999--------------------------------------------------------
Q 002763 602 AMLGGHENVIKLLMENHADINSGD-------------------------------------------------------- 625 (883)
Q Consensus 602 A~~~g~~~~v~~Ll~~ga~~~~~d-------------------------------------------------------- 625 (883)
|+..|+.+++++|+++|++++..+
T Consensus 131 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (351)
T 3utm_A 131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210 (351)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTT
T ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 99749999999999769998633678986237775332589998640421799999832499999999700013357888
Q ss_pred CCHHHHHHHHH---CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 63368899971---999999999973998433589997088999981999999999849999999999999988999974
Q 002763 626 VGHFACTAAEQ---NNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQ 702 (883)
Q Consensus 626 ~~~~l~~a~~~---~~~~~~~~Ll~~g~d~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~i~~~d~~G~Tpl~~A~~~ 702 (883)
..++++.|+.. +..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus 211 ~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~ 290 (351)
T 3utm_A 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALA 290 (351)
T ss_dssp CCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 99889999997175589999999975999677699999899999985989899999987999877599999889999982
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9998999985021122333233467874321224
Q 002763 703 GHEEIKCIFQSCKETKAQSIISVAERPQQEVHYL 736 (883)
Q Consensus 703 ~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (883)
|+.+++++|+++|+.. ...+..+.++.++.
T Consensus 291 ~~~~~v~~Ll~~gad~----~~~~~~g~tal~~a 320 (351)
T 3utm_A 291 GHLQTCRLLLSYGSDP----SIISLQGFTAAQMG 320 (351)
T ss_dssp TCHHHHHHHHHTTCCT----TCCCTTSCCHHHHS
T ss_pred CCHHHHHHHHHCCCCC----CCCCCCCCCHHHHH
T ss_conf 8599999999849998----88688998836563
No 4
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=1.00 E-value=1 Score=254.23 Aligned_cols=206 Identities=23% Similarity=0.352 Sum_probs=190.6
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 77316889998629999999999869999878899995999999719999999998199999878999998789999829
Q 002763 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGG 606 (883)
Q Consensus 527 ~d~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g 606 (883)
++|.|+||.|+..|+.++++.|++.|+++|..|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 1 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 99777999999829899999999779999985899987799999849999999999879998877888998799999869
Q ss_pred CHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 6999999998399989999-633688999719999999999739984335899970889999819999999998499999
Q 002763 607 HENVIKLLMENHADINSGD-VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADV 685 (883)
Q Consensus 607 ~~~~v~~Ll~~ga~~~~~d-~~~~l~~a~~~~~~~~~~~Ll~~g~d~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~i 685 (883)
+.+++++|++.|++++..+ +.++++.|+..++.++++.|+++|++++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 160 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160 (261)
T ss_dssp CHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCC
T ss_conf 89999999987899998999999899999848699999999869987867788998899999809899999999869998
Q ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999998899997499989999850211223332334678743212245
Q 002763 686 DKPDVHGWTPRDLADQQGHEEIKCIFQSCKETKAQSIISVAERPQQEVHYLG 737 (883)
Q Consensus 686 ~~~d~~G~Tpl~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (883)
+. +..|+||+|+|+..++.+++++|++.|++. ...+..+.++.++..
T Consensus 161 ~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~----~~~d~~g~tpl~~A~ 207 (261)
T 2xai_A 161 NQ-GKGQDSPLHAVARTASEELACLLMDFGADT----QAKNAEGKRPVELVP 207 (261)
T ss_dssp TC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCT----TCCCTTSCCGGGGSC
T ss_pred CC-CCCCCCHHHHHHHCCCHHHHHHHHHCCCCC----CCCCCCCCCHHHHCC
T ss_conf 87-999998699998819899999999859799----873899997655166
No 5
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=253.03 Aligned_cols=192 Identities=18% Similarity=0.089 Sum_probs=163.5
Q ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC----CCCCCC----------
Q ss_conf 887731688999862999999999986999987889999599999971999999999819----999987----------
Q 002763 525 GRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDY----EADPNS---------- 590 (883)
Q Consensus 525 ~~~d~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~----ga~~n~---------- 590 (883)
.+.+|.|+||.|+..|+.++++.|++.|++++. .+|.||||+|+..|+.+++++|+++ |++++.
T Consensus 49 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~ 126 (364)
T 3ljn_A 49 QNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREV 126 (364)
T ss_dssp CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCE
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC--CCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCHHHH
T ss_conf 489999699999985989999999977997545--689988999988699889999997133358777889863026766
Q ss_pred -------CCCCCCCHHHHHHHCC--CHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCHHHHHHHHHCCCC-----CCC
Q ss_conf -------8999998789999829--6999999998399989999--63368899971999999999973998-----433
Q 002763 591 -------IDSDGNVPLWEAMLGG--HENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGD-----VTR 654 (883)
Q Consensus 591 -------~d~~g~tpL~~A~~~g--~~~~v~~Ll~~ga~~~~~d--~~~~l~~a~~~~~~~~~~~Ll~~g~d-----~~~ 654 (883)
+|..|.||||+|+..| +.+++++|++.|++++..+ +.++++.|+..++.+++++|+++|++ ++.
T Consensus 127 ~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~ 206 (364)
T 3ljn_A 127 NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206 (364)
T ss_dssp EEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC
T ss_pred HHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 54035667988987899999749966999999997699973628899989999998298999999986055412355523
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 5899970889999819999999998499999999999999889999749998999985021122
Q 002763 655 QRNNGSTALHVAVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 655 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~i~~~d~~G~Tpl~~A~~~~~~~i~~~L~~~~~~~ 718 (883)
.|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++++..
T Consensus 207 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270 (364)
T ss_dssp CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCH
T ss_conf 2889980999999759889999999869998887999998899999838299999999748805
No 6
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=251.13 Aligned_cols=196 Identities=27% Similarity=0.367 Sum_probs=181.0
Q ss_pred HCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC---CCCCCCCCCCCCHH
Q ss_conf 408877316889998629999999999869999878899995999999719999999998199---99987899999878
Q 002763 523 ARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYE---ADPNSIDSDGNVPL 599 (883)
Q Consensus 523 ~~~~~d~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~g---a~~n~~d~~g~tpL 599 (883)
+..+.+|.|+||.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|++++ ++++..|..|.|||
T Consensus 160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L 239 (373)
T 2fo1_E 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239 (373)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred CCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHCCCCCCCHH
T ss_conf 67789998989999986949999999977999761589898799999877998899999845765567322377899799
Q ss_pred HHHHHCC---CHHHHHHHHHCCCCCCCC----------CCCHHHHHHHHHCCHHHHHHHHHCC-CCCCCCCCCCCHHHHH
Q ss_conf 9999829---699999999839998999----------9633688999719999999999739-9843358999708899
Q 002763 600 WEAMLGG---HENVIKLLMENHADINSG----------DVGHFACTAAEQNNLELLKEIVCYG-GDVTRQRNNGSTALHV 665 (883)
Q Consensus 600 ~~A~~~g---~~~~v~~Ll~~ga~~~~~----------d~~~~l~~a~~~~~~~~~~~Ll~~g-~d~~~~d~~g~T~Lh~ 665 (883)
|+|+..+ +.+++++|++.|++++.. ++.++++.|+..++.+++++|++++ ++++..|..|.||||+
T Consensus 240 ~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~ 319 (373)
T 2fo1_E 240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319 (373)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99998378344999999997799765555444575554588899999980999999999973689866769899989999
Q ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 99819999999998499999999999999889999749998999985021122
Q 002763 666 AVCEDNVEIVRFLLDQKADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETK 718 (883)
Q Consensus 666 A~~~g~~~~v~~Ll~~ga~i~~~d~~G~Tpl~~A~~~~~~~i~~~L~~~~~~~ 718 (883)
|+..|+.+++++|+++|++++.+|..|+||+++|+..|+.+++++|+++++..
T Consensus 320 A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 99868999999999769985477989999999999859888999987337345
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=250.65 Aligned_cols=209 Identities=22% Similarity=0.336 Sum_probs=192.3
Q ss_pred CCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 08877316889998629999999999869999878899995999999719999999998199999878999998789999
Q 002763 524 RGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAM 603 (883)
Q Consensus 524 ~~~~d~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~ 603 (883)
..+.+|.|+||.|+..|+.++++.|++.|+++|..|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~ 133 (285)
T 3d9h_A 54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC 133 (285)
T ss_dssp SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 88756788899999868999999999779999872889988999999887499999999778998887899998999999
Q ss_pred HCCCHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 8296999999998399989999-633688999719999999999739984335899970889999819999999998499
Q 002763 604 LGGHENVIKLLMENHADINSGD-VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQK 682 (883)
Q Consensus 604 ~~g~~~~v~~Ll~~ga~~~~~d-~~~~l~~a~~~~~~~~~~~Ll~~g~d~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g 682 (883)
..|+.+++++|++.|++++..+ +.++++.|+..++.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus 134 ~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 213 (285)
T 3d9h_A 134 VSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213 (285)
T ss_dssp HHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
T ss_conf 86989999999977999887889978999999868899999999779998875788998899999839099999999878
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999998899997499989999850211223332334678743212245
Q 002763 683 ADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKETKAQSIISVAERPQQEVHYLG 737 (883)
Q Consensus 683 a~i~~~d~~G~Tpl~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (883)
++++. |..|+||||+|+..++.+++++|+++++.. ...+..+.++.++..
T Consensus 214 a~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~----~~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 214 ADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADT----QAKNAEGKRPVELVP 263 (285)
T ss_dssp CCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCT----TCCCTTSCCGGGGSC
T ss_pred CCCCC-CCCCCCHHHHHHHCCCHHHHHHHHHCCCCC----CCCCCCCCCHHHHHC
T ss_conf 99887-989998999998809999999999779998----775889998999825
No 8
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=249.29 Aligned_cols=190 Identities=29% Similarity=0.381 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 73168899986299999999998699998788999959999997199999999981999998789999987899998296
Q 002763 528 DLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGGH 607 (883)
Q Consensus 528 d~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~ 607 (883)
++.|+||.|+..|+.++++.|++.|++++..+.+|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..|+
T Consensus 178 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 257 (437)
T 1n11_A 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH 257 (437)
T ss_dssp SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 99888999998199999999984799988767789988999998698999999997699988879899979999997788
Q ss_pred HHHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 999999998399989999--633688999719999999999739984335899970889999819999999998499999
Q 002763 608 ENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKADV 685 (883)
Q Consensus 608 ~~~v~~Ll~~ga~~~~~d--~~~~l~~a~~~~~~~~~~~Ll~~g~d~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~i 685 (883)
.+++++|++.|++++..+ +.++++.|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 258 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~ 337 (437)
T 1n11_A 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337 (437)
T ss_dssp HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 99999999669999987999997999999849999999998487567887999988999999869499999999669999
Q ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 99999999988999974999899998502112
Q 002763 686 DKPDVHGWTPRDLADQQGHEEIKCIFQSCKET 717 (883)
Q Consensus 686 ~~~d~~G~Tpl~~A~~~~~~~i~~~L~~~~~~ 717 (883)
+.+|..|+||||+|+..|+.+++++|+++|+.
T Consensus 338 n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~ 369 (437)
T 1n11_A 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369 (437)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 98899998899999987819999999977689
No 9
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=249.24 Aligned_cols=176 Identities=30% Similarity=0.369 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHCCCH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 731688999862999-9999999869999878899995999999719999999998199999878999998789999829
Q 002763 528 DLPLSLCFAALRGDD-LLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAMLGG 606 (883)
Q Consensus 528 d~~t~L~~Aa~~g~~-~~v~~Ll~~g~d~n~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g 606 (883)
++.++|+.|+..++. .+++.|++.|+|+|..|.+|+||||+||..|+.+++++|++.|++++.++..|.||++.|+..+
T Consensus 51 ~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~ 130 (269)
T 4b93_B 51 EFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG 130 (269)
T ss_dssp ------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67789999998499899999999879998876999999999999849699999998659986755789998330000127
Q ss_pred CHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 6999999998399989999--63368899971999999999973998433589997088999981999999999849999
Q 002763 607 HENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQKAD 684 (883)
Q Consensus 607 ~~~~v~~Ll~~ga~~~~~d--~~~~l~~a~~~~~~~~~~~Ll~~g~d~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~ 684 (883)
+.+++++|++.|++++..| +.++++.|+..|+.+++++|+++|+++|..+..|.||||+|+..|+.+++++|+++|||
T Consensus 131 ~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad 210 (269)
T 4b93_B 131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS 210 (269)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 29999999987999887789999999999987899999999978799783214788389999986889999999987889
Q ss_pred CCCCCCCCCCHHHHHHHCC
Q ss_conf 9999999999889999749
Q 002763 685 VDKPDVHGWTPRDLADQQG 703 (883)
Q Consensus 685 i~~~d~~G~Tpl~~A~~~~ 703 (883)
++.+|..|+||||+|++++
T Consensus 211 ~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 211 VQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp SCCCCTTSCCSGGGSCTTC
T ss_pred CCCCCCCCCCHHHHHHHCC
T ss_conf 9886999999999988378
No 10
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=247.93 Aligned_cols=193 Identities=24% Similarity=0.292 Sum_probs=181.7
Q ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 88773168899986299999999998699998788999959999997199999999981999998789999987899998
Q 002763 525 GRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGSENCVLLLLDYEADPNSIDSDGNVPLWEAML 604 (883)
Q Consensus 525 ~~~d~~t~L~~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~ 604 (883)
.+.++.|+||.|+..|+.++++.|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.
T Consensus 208 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 287 (437)
T 1n11_A 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ 287 (437)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 67789988999998698999999997699988879899979999997788999999996699999879999979999998
Q ss_pred CCCHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 296999999998399989999--633688999719999999999739984335899970889999819999999998499
Q 002763 605 GGHENVIKLLMENHADINSGD--VGHFACTAAEQNNLELLKEIVCYGGDVTRQRNNGSTALHVAVCEDNVEIVRFLLDQK 682 (883)
Q Consensus 605 ~g~~~~v~~Ll~~ga~~~~~d--~~~~l~~a~~~~~~~~~~~Ll~~g~d~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g 682 (883)
.|+.+++++|+++|++++..+ +.++++.|+..++.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|
T Consensus 288 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g 367 (437)
T 1n11_A 288 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367 (437)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCC
T ss_conf 49999999998487567887999988999999869499999999669999988999988999999878199999999776
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 99999999999988999974999899998502112
Q 002763 683 ADVDKPDVHGWTPRDLADQQGHEEIKCIFQSCKET 717 (883)
Q Consensus 683 a~i~~~d~~G~Tpl~~A~~~~~~~i~~~L~~~~~~ 717 (883)
|+++.+|..|+||+++|+..|+.+++++|......
T Consensus 368 a~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~~ 402 (437)
T 1n11_A 368 ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402 (437)
T ss_dssp CCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 89988789989899999884958999999860244
Done!