BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002768
(883 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 1199 bits (3102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/825 (72%), Positives = 670/825 (81%), Gaps = 14/825 (1%)
Query: 2 QENKFLKFLSFMWNPLSWVMEAAAVMAIVLANGGGQGPDWQDFVGIVCLLLINSTISFIE 61
+E+K LKFL FMWNPLSWVME AA+MAI LANG G+ PDWQDFVGI+CLL+INSTISFIE
Sbjct: 54 KESKLLKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIE 113
Query: 62 EXXXXXXXXXXXXXXXPKTKVLREGQWKEQDAAVLVPGDIISIKLGDIIPADARLLEGDP 121
E PKTKVLR+G+W EQ+AA+LVPGDI+SIKLGDIIPADARLLEGDP
Sbjct: 114 ENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDP 173
Query: 122 LKIDQASSALTGESLPVTKKTADEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTE 181
LK+DQ SALTGESLPVTK EVFSGSTCK GEIEAVVIATGVH+FFGKAAHLVDST
Sbjct: 174 LKVDQ--SALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTN 231
Query: 182 VVGHFQQVLTSIGNFCICSIAVGMILEIIVMFPIQHRSYRDXXXXXXXXXXXXXXXAMPT 241
VGHFQ+VLT+IGNFCICSIA+GM++EIIVM+PIQ R YRD AMPT
Sbjct: 232 QVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPT 291
Query: 242 VLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFNR 301
VLSVT+AIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLN+L+VD+NL+EVF +
Sbjct: 292 VLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCK 351
Query: 302 NMDKDMIVLLAARAARLENQDAIDAAIINMLADPKEARANIKEVHFLPFNPVDKRTAITY 361
++KD ++L AA A+R+ENQDAIDAA++ MLADPKEARA I+EVHFLPFNPVDKRTA+TY
Sbjct: 352 GVEKDQVLLFAAMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTY 411
Query: 362 IDSDGNWYRASKGAPEQILNLCKEKKEIAVKVHTIIDKFAERGLRSLAVAIQEVSEMTKE 421
ID GNW+R SKGAPEQIL L K +++ KV +IIDK+AERGLRSLAVA Q V E TKE
Sbjct: 412 IDGSGNWHRVSKGAPEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKE 471
Query: 422 SPGGPWTFCGLLPLFDPPRHDSVDTIRRALNLGVCVKMITGDQLAIAKETGRRLGMATNM 481
SPG PW F GLLPLFDPPRHDS +TIRRALNLGV VKMITGDQLAI KETGRRLGM TNM
Sbjct: 472 SPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNM 531
Query: 482 YPSSSLLGRDKDENEA-LPVDELIEEADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVN 540
YPSS+LLG KD N A +PV+ELIE+ADGFAGVFPEHKYEIVK LQE+KH+VGMTGDGVN
Sbjct: 532 YPSSALLGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVN 591
Query: 541 DAPALKKXXXXXXXXXXXXXXXXXXXXXLTEPGLSVIISAVLTSRAIFQRMKNYTL---- 596
DAPALKK LTEPGLSVIISAVLTSRAIFQRMKNYT+
Sbjct: 592 DAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVS 651
Query: 597 -------GFVLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPRPDSWKLNEIFA 649
GF+L+ALIWE+DF FMVLIIAILNDGTIMTISKDRVKPSP PDSWKL EIFA
Sbjct: 652 ITIRIVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFA 711
Query: 650 TGIVIGTYLALVTVLFYWVVVDTDFFETHFHVKXXXXXXXXXXXALYLQVSIISQALIFV 709
TG+V+G Y A++TV+F+W TDFF F V+ A+YLQVSIISQALIFV
Sbjct: 712 TGVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFV 771
Query: 710 TRSQSWSFLERPGALLMCAFVVAQLVATLIAVYAHISFAYISGVGWGWAGVIWLYSFVFY 769
TRS+SWSF+ERPGALLM AF++AQL+ATLIAVYA+ FA I G+GWGWAGVIWLYS V Y
Sbjct: 772 TRSRSWSFVERPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTY 831
Query: 770 IPLDVIKFIVRYALSGEAWNLVFDRKTAFTSKKDYGKEDRAAQWI 814
PLDV KF +RY LSG+AW +F+ KTAFT KKDYGKE+R AQW+
Sbjct: 832 FPLDVFKFAIRYILSGKAWLNLFENKTAFTMKKDYGKEEREAQWM 876
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust.
Identities = 268/805 (33%), Positives = 404/805 (50%), Gaps = 58/805 (7%)
Query: 2 QENKFLKFLSFMWNPLSWVMEAAAVMAIVLANGGGQGPDWQDFVGIVC-LLLINSTISFI 60
+EN FLKFL F P+ +VME AAV+A L DW DF G++C LLL+N+ + F+
Sbjct: 109 KENHFLKFLGFFVGPIQFVMEGAAVLAAGLE-------DWVDF-GVICGLLLLNAVVGFV 160
Query: 61 EEXXXXXXXXXXXXXXXPKTKVLREGQWKEQDAAVLVPGDIISIKLGDIIPADARLLEGD 120
+E K VLR+G KE +A +VPGDI+ ++ G IIPAD R++ D
Sbjct: 161 QEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDD 220
Query: 121 P-LKIDQASSALTGESLPVTKKTADEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDS 179
L++DQ SALTGESL V K D+VF+ S K GE V+ ATG ++F G+AA LV++
Sbjct: 221 AFLQVDQ--SALTGESLAVDKHKGDQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNA 278
Query: 180 TEV-VGHFQQVLTSIGNFCICSIAVGMILEIIVMFPIQHRSYRDXXXXXXXXXXXXXXXA 238
GHF +VL IG + + +++ + F +
Sbjct: 279 ASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSF-YRSNPIVQILEFTLAITIIGVPVG 337
Query: 239 MPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEV 298
+P V++ T+A+G+ L+++ AI ++++AIE +AG+++LCSDKTGTLT N+L++ + V
Sbjct: 338 LPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSL-HDPYTV 396
Query: 299 FNRNMDKDMIVLLAARAARLENQDAIDAAIINMLADPKEARA---NIKEVHFLPFNPVDK 355
+ + M+ A + + + DAID A + L A++ K + F PF+PV K
Sbjct: 397 AGVDPEDLMLTACLAASRKKKGIDAIDKAFLKSLKYYPRAKSVLSKYKVLQFHPFDPVSK 456
Query: 356 RTAITYIDSDGNWYRASKGAPEQILNLCKEKKEIAVKVHTI----IDKFAERGLRSLAVA 411
+ G KGAP +L +E I +V + +FA RG RSL VA
Sbjct: 457 KVVAVVESPQGERITCVKGAPLFVLKTVEEDHPIPEEVDQAYKNKVAEFATRGFRSLGVA 516
Query: 412 IQEVSEMTKESPGGPWTFCGLLPLFDPPRHDSVDTIRRALNLGVCVKMITGDQLAIAKET 471
++ G W G++P DPPRHD+ T+ A LG+ +KM+TGD + IA+ET
Sbjct: 517 --------RKRGEGSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARET 568
Query: 472 GRRLGMATNMYPSSSLLGRDKDENEALPVDELIEEADGFAGVFPEHKYEIVKILQEKKHV 531
R+LG+ TN+Y + L + V + +E ADGFA VFP+HKY +V+ILQ++ ++
Sbjct: 569 SRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYL 628
Query: 532 VGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXXLTEPGLSVIISAVLTSRAIFQRM 591
V MTGDGVNDAP+LKK PGL II A+ TSR IF RM
Sbjct: 629 VAMTGDGVNDAPSLKKADTGIAVEGSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRM 688
Query: 592 KNYTLGFVLLAL-----------IWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPRPD 640
Y + + L++ I +V+ IAI D + I+ D S P
Sbjct: 689 YAYVVYRIALSIHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPV 748
Query: 641 SWKLNEIFATGIVIGTYLALVTVLFYWVVVDTDFFETHFHVKXXXXXXXXXXXALYLQVS 700
W L +++ +++G LA+ T W+ V T + + L+LQ+S
Sbjct: 749 KWNLPKLWGMSVLLGVVLAVGT----WITVTTMYAQGEN--GGIVQNFGNMDEVLFLQIS 802
Query: 701 IISQALIFVTRSQSWSFLERPGALLMCAFVVAQLVATLIAVYAHISFAYISGVGWGWAGV 760
+ LIF+TR+ + P L A + ++AT ++ + S V
Sbjct: 803 LTENWLIFITRANGPFWSSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVA---VVR 859
Query: 761 IWLYSF--------VFYIPLDVIKF 777
IW++SF V+YI D + F
Sbjct: 860 IWIFSFGIFCIMGGVYYILQDSVGF 884
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 145 bits (367), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 165/713 (23%), Positives = 292/713 (40%), Gaps = 106/713 (14%)
Query: 5 KFLKFLSFMWNPLSWVMEAAAVMAIVLANGGGQGPDWQD-FVGIV--CLLLINSTISFIE 61
KF + L ++ L W+ +A + + P + ++G+V +++I S+ +
Sbjct: 66 KFCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQ 125
Query: 62 EXXXXXXXXXXXXXXXPKTKVLREGQWKEQDAAVLVPGDIISIKLGDIIPADARLLEGDP 121
E + V+R G+ +A +V GD++ +K GD IPAD R++ +
Sbjct: 126 EAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANG 185
Query: 122 LKIDQASSALTGESLPVTK----------KTADEVFSGSTCKHGEIEAVVIATGVHSFFG 171
K+D +S+LTGES P T+ +T + F + C G +V+ TG + G
Sbjct: 186 CKVD--NSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMG 243
Query: 172 KAAHLVDSTEVVGHFQQVLTSIGNFC--ICSIAVGMILEIIVMFPIQHRSYRDXXXXXXX 229
+ A L E G + I +F I +AV + + ++ I ++ +
Sbjct: 244 RIATLASGLE--GGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIG 301
Query: 230 XXXXXXXXAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRL 289
+ ++V L + + R++++ + K + A+E + +CSDKTGTLT NR+
Sbjct: 302 IIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRM 361
Query: 290 TV-----DRNLIEV----------FNRN----MDKDMIVLLAARAARLENQ--------- 321
TV D + E F++ + I L RA NQ
Sbjct: 362 TVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRA 421
Query: 322 ---DAIDAAIINML----ADPKEARANIKEVHFLPFNPVDKRTAITYIDSDGNWYR---A 371
DA ++A++ + KE R ++ +PFN +K + + + R
Sbjct: 422 VAGDASESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLV 481
Query: 372 SKGAPEQILNLC-------------KEKKEIAVKVHTIIDKFAER--GLRSLAVAIQEVS 416
KGAPE+IL+ C +E K+ + + ER G L + ++
Sbjct: 482 MKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFP 541
Query: 417 EMTK------ESPGGPWTFCGLLPLFDPPRHDSVDTIRRALNLGVCVKMITGDQLAIAKE 470
E + P F GL+ + DPPR D + + + G+ V M+TGD AK
Sbjct: 542 EGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKA 601
Query: 471 TGRRLGM------------------ATNMYPSSS----LLGRDKDENEALPVDELIEEAD 508
+ +G+ + + P + + G D + + +D++++
Sbjct: 602 IAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHT 661
Query: 509 G--FAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKXXX-XXXXXXXXXXXXXXX 565
FA P+ K IV+ Q + +V +TGDGVND+PA KK
Sbjct: 662 EIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAA 721
Query: 566 XXXLTEPGLSVIISAVLTSRAIFQRMKNYTLGFVLLALIWEYDFPPFMVLIIA 618
L + + I++ V R IF +K ++ + L + I E PF++ IIA
Sbjct: 722 DMILLDDNFASIVTGVEEGRLIFDNLKK-SIAYTLTSNIPE--ITPFLIFIIA 771
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 174/725 (24%), Positives = 282/725 (38%), Gaps = 134/725 (18%)
Query: 5 KFLKFLSFMWNPLSWVMEAAAVMAIVLANGGGQGPDWQD-----FVGIVCLLLINSTISF 59
KF + L+ L WV AAA+ I A +G D + ++ ++++ +
Sbjct: 101 KFARQLAGGLQCLMWV--AAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGY 158
Query: 60 IEEXXXXXXXXXXXXXXXPKTKVLREGQWKEQDAAVLVPGDIISIKLGDIIPADARLLEG 119
+E + V+R+G + +A LV GD++ +K GD +PAD R+L+
Sbjct: 159 YQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQA 218
Query: 120 DPLKIDQASSALTGESLPVTK----------KTADEVFSGSTCKHGEIEAVVIATGVHSF 169
K+D +S+LTGES P T+ +T + F + C G + +V+ TG +
Sbjct: 219 QGRKVD--NSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTI 276
Query: 170 FGKAAHLVDSTE--------VVGHFQQVLTSIGNFCICSIAVGMILEIIVMFPIQHRSYR 221
G+ A L E + HF ++ + +I G I+ M I + R
Sbjct: 277 IGRIASLASGVENEKTPIAIEIEHFVDIIAGL------AILFGATFFIVAMC-IGYTFLR 329
Query: 222 DXXXXXXXXXXXXXXXAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKT 281
+ TV +V L++ + RL+ + + K + A+E + V+CSDKT
Sbjct: 330 AMVFFMAIVVAYVPEGLLATV-TVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKT 388
Query: 282 GTLTLNRLTVDR----NLIEVFNRNMDKD---------------MIVLLAARAARLENQD 322
GTLT NR+TV N I + D+ ++ L RAA QD
Sbjct: 389 GTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQD 448
Query: 323 AIDAAIINMLADPKEA----------------RANIKEVHFLPFNPVDK-RTAITYIDS- 364
A+ ++ D E R +V +PFN +K + +I ++
Sbjct: 449 AVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDP 508
Query: 365 -DGNWYRASKGAPEQILNLC-------------KEKKEIAVKVHTIIDKFAERGLRSLAV 410
D KGAPE++L C ++ +E + + ER L +
Sbjct: 509 RDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQL 568
Query: 411 AIQE----------VSEMTKESPGGPWTFCGLLPLFDPPRHDSVDTIRRALNLGVCVKMI 460
+ E V M + G +F GL+ + DPPR D + + G+ V M+
Sbjct: 569 YLSEKDYPPGYAFDVEAMNFPTSG--LSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMV 626
Query: 461 TGDQLAIAKETGRRLGMATNMYPSSSLLGRDKDENEALPVD------------------- 501
TGD AK +G+ + S D +PVD
Sbjct: 627 TGDHPITAKAIAASVGIISE----GSETVEDIAARLRVPVDQVNRKDARACVINGMQLKD 682
Query: 502 ----ELIEEADG-----FAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKXXX-X 551
EL+E FA P+ K IV+ Q +V +TGDGVND+PALKK
Sbjct: 683 MDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGV 742
Query: 552 XXXXXXXXXXXXXXXXXLTEPGLSVIISAVLTSRAIFQRMKNYTLGFVLLALIWEYDFPP 611
L + + I++ V R IF +K ++ + L I E P
Sbjct: 743 AMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKK-SIAYTLTKNIPE--LTP 799
Query: 612 FMVLI 616
+++ I
Sbjct: 800 YLIYI 804
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 158/671 (23%), Positives = 269/671 (40%), Gaps = 101/671 (15%)
Query: 44 FVGIV--CLLLINSTISFIEEXXXXXXXXXXXXXXXPKTKVLREGQWKEQDAAVLVPGDI 101
++G+V ++++ S+ +E + V+R+G+ +A +V GD+
Sbjct: 136 YLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDL 195
Query: 102 ISIKLGDIIPADARLLEGDPLKIDQASSALTGESLPVTK----------KTADEVFSGST 151
+ +K GD IPAD R++ K+D +S+LTGES P T+ +T + F +
Sbjct: 196 VEVKGGDRIPADLRIISAHGCKVD--NSSLTGESEPQTRSPEFSSENPLETRNIAFFSTN 253
Query: 152 CKHGEIEAVVIATGVHSFFGKAAHLVDSTEVVGHFQQVLTSIGNFCICSIAVGMILEIIV 211
C G VV+ TG + G+ A L EV + I +AV + + +
Sbjct: 254 CVEGTARGVVVYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFI 313
Query: 212 MFPIQHRSYRDXXXXXXXXXXXXXXXAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMA 271
+ I S+ + + ++V L + + R++++ + K + A+E +
Sbjct: 314 LSLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLG 373
Query: 272 GMDVLCSDKTGTLTLNRLTV-----DRNLIEVFNRN------MDK--------DMIVLLA 312
+CSDKTGTLT NR+TV D + E DK I L
Sbjct: 374 STSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALC 433
Query: 313 ARAARLENQDAIDAAIINMLADPKEA----------------RANIKEVHFLPFNPVDKR 356
RA QD + ++ D E+ R ++ +PFN +K
Sbjct: 434 NRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKY 493
Query: 357 TAITYID---SDGNWYRASKGAPEQILNLC-------------KEKKEIAVKVHTIIDKF 400
+ + S+ + KGAPE+IL+ C ++ KE + +
Sbjct: 494 QLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGGL 553
Query: 401 AER--GLRSLAVAIQEVSE---MTKESPGGPWT---FCGLLPLFDPPRHDSVDTIRRALN 452
ER G A+ + +E + P P T F GL+ + DPPR D + + +
Sbjct: 554 GERVLGFCHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRS 613
Query: 453 LGVCVKMITGDQLAIAKETGRRLGMAT------------------NMYPSSS----LLGR 490
G+ V M+TGD AK + +G+ + + P + + G
Sbjct: 614 AGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGS 673
Query: 491 DKDENEALPVDELIEEADG--FAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKX 548
D + +D+++ FA P+ K IV+ Q + +V +TGDGVND+PALKK
Sbjct: 674 DLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKA 733
Query: 549 XX-XXXXXXXXXXXXXXXXXXLTEPGLSVIISAVLTSRAIFQRMKNYTLGFVLLALIWEY 607
L + + I++ V R IF +K ++ + L + I E
Sbjct: 734 DIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKK-SIAYTLTSNIPE- 791
Query: 608 DFPPFMVLIIA 618
PF+V II
Sbjct: 792 -ITPFLVFIIG 801
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 164/713 (23%), Positives = 291/713 (40%), Gaps = 106/713 (14%)
Query: 5 KFLKFLSFMWNPLSWVMEAAAVMAIVLANGGGQGPDWQD-FVGIV--CLLLINSTISFIE 61
KF + L ++ L W+ +A + + P + ++G+V +++I S+ +
Sbjct: 60 KFCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQ 119
Query: 62 EXXXXXXXXXXXXXXXPKTKVLREGQWKEQDAAVLVPGDIISIKLGDIIPADARLLEGDP 121
E + V+R G+ +A +V GD++ +K GD IPAD R++ +
Sbjct: 120 EAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANG 179
Query: 122 LKIDQASSALTGESLPVTK----------KTADEVFSGSTCKHGEIEAVVIATGVHSFFG 171
K+D +S+LTGES P T+ +T + F + C G +V+ TG + G
Sbjct: 180 CKVD--NSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMG 237
Query: 172 KAAHLVDSTEVVGHFQQVLTSIGNFC--ICSIAVGMILEIIVMFPIQHRSYRDXXXXXXX 229
+ A L E G + I +F I +AV + + ++ I ++ +
Sbjct: 238 RIATLASGLE--GGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIG 295
Query: 230 XXXXXXXXAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRL 289
+ ++V L + + R++++ + K + A+E + +CS KTGTLT NR+
Sbjct: 296 IIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRM 355
Query: 290 TV-----DRNLIEV----------FNRN----MDKDMIVLLAARAARLENQ--------- 321
TV D + E F++ + I L RA NQ
Sbjct: 356 TVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRA 415
Query: 322 ---DAIDAAIINML----ADPKEARANIKEVHFLPFNPVDKRTAITYIDSDGNWYR---A 371
DA ++A++ + KE R ++ +PFN +K + + + R
Sbjct: 416 VAGDASESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLV 475
Query: 372 SKGAPEQILNLC-------------KEKKEIAVKVHTIIDKFAER--GLRSLAVAIQEVS 416
KGAPE+IL+ C +E K+ + + ER G L + ++
Sbjct: 476 MKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFP 535
Query: 417 EMTK------ESPGGPWTFCGLLPLFDPPRHDSVDTIRRALNLGVCVKMITGDQLAIAKE 470
E + P F GL+ + DPPR D + + + G+ V M+TGD AK
Sbjct: 536 EGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKA 595
Query: 471 TGRRLGM------------------ATNMYPSSS----LLGRDKDENEALPVDELIEEAD 508
+ +G+ + + P + + G D + + +D++++
Sbjct: 596 IAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHT 655
Query: 509 G--FAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKXXX-XXXXXXXXXXXXXXX 565
FA P+ K IV+ Q + +V +TGDGVND+PA KK
Sbjct: 656 EIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAA 715
Query: 566 XXXLTEPGLSVIISAVLTSRAIFQRMKNYTLGFVLLALIWEYDFPPFMVLIIA 618
L + + I++ V R IF +K ++ + L + I E PF++ IIA
Sbjct: 716 DMILLDDNFASIVTGVEEGRLIFDNLKK-SIAYTLTSNIPE--ITPFLIFIIA 765
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 153/373 (41%), Gaps = 71/373 (19%)
Query: 269 EMAGMDVLCSD-------------KTGTLTLNRLTVDRNLIEVFN---RNMDKDMIVLLA 312
E+A + LC+D K G T LT + VFN RN+ K
Sbjct: 412 ELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSK------- 464
Query: 313 ARAARLENQDAIDAAIINMLADPKEARANIKEVHFLPFNPVDKRTAITYIDSDGNWYRAS 372
+E +A ++ I R +K+ L F+ D+++ Y S RA+
Sbjct: 465 -----VERANACNSVI----------RQLMKKEFTLEFSR-DRKSMSVYC-SPAKSSRAA 507
Query: 373 -------KGAPEQILNLCKEKK----------EIAVKVHTIIDKFA--ERGLRSLAVAIQ 413
KGAPE +++ C + + K+ ++I ++ LR LA+A +
Sbjct: 508 VGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATR 567
Query: 414 EV----SEMTKESPG------GPWTFCGLLPLFDPPRHDSVDTIRRALNLGVCVKMITGD 463
+ EM + TF G++ + DPPR + + +I+ + G+ V MITGD
Sbjct: 568 DTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGD 627
Query: 464 QLAIAKETGRRLGM--ATNMYPSSSLLGRDKDENEALPVDELIEEADGFAGVFPEHKYEI 521
A RR+G+ + GR+ D+ E A FA V P HK +I
Sbjct: 628 NKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKI 687
Query: 522 VKILQEKKHVVGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXXLTEPGLSVIISAV 581
V+ LQ + MTGDGVNDAPALKK L + S I++AV
Sbjct: 688 VEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAV 747
Query: 582 LTSRAIFQRMKNY 594
RAI+ MK +
Sbjct: 748 EEGRAIYNNMKQF 760
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 31/228 (13%)
Query: 96 LVPGDIISIKLGDIIPADARLL--EGDPLKIDQASSALTGESLPVTKKT----------- 142
+VPGDI+ + +GD +PAD R+L + L++DQ S LTGES+ V K T
Sbjct: 145 IVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQ--SILTGESVSVIKHTEPVPDPRAVNQ 202
Query: 143 --ADEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTEV-VGHFQQVLTSIGNFCIC 199
+ +FSG+ G+ +V TGV + GK + +TE QQ L G
Sbjct: 203 DKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGE--QL 260
Query: 200 SIAVGMILEIIVMFPIQH-----------RSYRDXXXXXXXXXXXXXXXAMPTVLSVTLA 248
S + +I + + I H R +P V++ LA
Sbjct: 261 SKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLA 320
Query: 249 IGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLI 296
+G+ R++++ AI + + ++E + V+CS KTGTLT N+++V + I
Sbjct: 321 LGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFI 368
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 153/373 (41%), Gaps = 71/373 (19%)
Query: 269 EMAGMDVLCSD-------------KTGTLTLNRLTVDRNLIEVFN---RNMDKDMIVLLA 312
E+A + LC+D K G T LT + VFN RN+ K
Sbjct: 413 ELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSK------- 465
Query: 313 ARAARLENQDAIDAAIINMLADPKEARANIKEVHFLPFNPVDKRTAITYIDSDGNWYRAS 372
+E +A ++ I R +K+ L F+ D+++ Y S RA+
Sbjct: 466 -----VERANACNSVI----------RQLMKKEFTLEFSR-DRKSMSVYC-SPAKSSRAA 508
Query: 373 -------KGAPEQILNLCKEKK----------EIAVKVHTIIDKFA--ERGLRSLAVAIQ 413
KGAPE +++ C + + K+ ++I ++ LR LA+A +
Sbjct: 509 VGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATR 568
Query: 414 EV----SEMTKESPG------GPWTFCGLLPLFDPPRHDSVDTIRRALNLGVCVKMITGD 463
+ EM + TF G++ + DPPR + + +I+ + G+ V MITGD
Sbjct: 569 DTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGD 628
Query: 464 QLAIAKETGRRLGM--ATNMYPSSSLLGRDKDENEALPVDELIEEADGFAGVFPEHKYEI 521
A RR+G+ + GR+ D+ E A FA V P HK +I
Sbjct: 629 NKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKI 688
Query: 522 VKILQEKKHVVGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXXLTEPGLSVIISAV 581
V+ LQ + MTGDGVNDAPALKK L + S I++AV
Sbjct: 689 VEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAV 748
Query: 582 LTSRAIFQRMKNY 594
RAI+ MK +
Sbjct: 749 EEGRAIYNNMKQF 761
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 31/228 (13%)
Query: 96 LVPGDIISIKLGDIIPADARLL--EGDPLKIDQASSALTGESLPVTKKT----------- 142
+VPGDI+ + +GD +PAD R+L + L++DQ S LTGES+ V K T
Sbjct: 146 IVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQ--SILTGESVSVIKHTEPVPDPRAVNQ 203
Query: 143 --ADEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTEV-VGHFQQVLTSIGNFCIC 199
+ +FSG+ G+ +V TGV + GK + +TE QQ L G
Sbjct: 204 DKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGE--QL 261
Query: 200 SIAVGMILEIIVMFPIQH-----------RSYRDXXXXXXXXXXXXXXXAMPTVLSVTLA 248
S + +I + + I H R +P V++ LA
Sbjct: 262 SKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLA 321
Query: 249 IGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLI 296
+G+ R++++ AI + + ++E + V+CSDKTGTLT N+++V + I
Sbjct: 322 LGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 153/373 (41%), Gaps = 71/373 (19%)
Query: 269 EMAGMDVLCSD-------------KTGTLTLNRLTVDRNLIEVFN---RNMDKDMIVLLA 312
E+A + LC+D K G T LT + VFN RN+ K
Sbjct: 412 ELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSK------- 464
Query: 313 ARAARLENQDAIDAAIINMLADPKEARANIKEVHFLPFNPVDKRTAITYIDSDGNWYRAS 372
+E +A ++ I R +K+ L F+ D+++ Y S RA+
Sbjct: 465 -----VERANACNSVI----------RQLMKKEFTLEFSR-DRKSMSVYC-SPAKSSRAA 507
Query: 373 -------KGAPEQILNLCKEKK----------EIAVKVHTIIDKFA--ERGLRSLAVAIQ 413
KGAPE +++ C + + K+ ++I ++ LR LA+A +
Sbjct: 508 VGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATR 567
Query: 414 EV----SEMTKESPG------GPWTFCGLLPLFDPPRHDSVDTIRRALNLGVCVKMITGD 463
+ EM + TF G++ + DPPR + + +I+ + G+ V MITGD
Sbjct: 568 DTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGD 627
Query: 464 QLAIAKETGRRLGM--ATNMYPSSSLLGRDKDENEALPVDELIEEADGFAGVFPEHKYEI 521
A RR+G+ + GR+ D+ E A FA V P HK +I
Sbjct: 628 NKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKI 687
Query: 522 VKILQEKKHVVGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXXLTEPGLSVIISAV 581
V+ LQ + MTGDGVNDAPALKK L + S I++AV
Sbjct: 688 VEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAV 747
Query: 582 LTSRAIFQRMKNY 594
RAI+ MK +
Sbjct: 748 EEGRAIYNNMKQF 760
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 31/228 (13%)
Query: 96 LVPGDIISIKLGDIIPADARLL--EGDPLKIDQASSALTGESLPVTKKT----------- 142
+VPGDI+ + +GD +PAD R+L + L++DQ S LTGES+ V K T
Sbjct: 145 IVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQ--SILTGESVSVIKHTEPVPDPRAVNQ 202
Query: 143 --ADEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTEV-VGHFQQVLTSIGNFCIC 199
+ +FSG+ G+ +V TGV + GK + +TE QQ L G
Sbjct: 203 DKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGE--QL 260
Query: 200 SIAVGMILEIIVMFPIQH-----------RSYRDXXXXXXXXXXXXXXXAMPTVLSVTLA 248
S + +I + + I H R +P V++ LA
Sbjct: 261 SKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLA 320
Query: 249 IGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLI 296
+G+ R++++ AI + + ++E + V+CSDKTGTLT N+++V + I
Sbjct: 321 LGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 108/246 (43%), Gaps = 24/246 (9%)
Query: 373 KGAPEQILNLCKEKK----------EIAVKVHTIIDKFA--ERGLRSLAVAIQEVSEMTK 420
KGAPE +++ C + + K+ ++I ++ LR LA+A ++ +
Sbjct: 514 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 573
Query: 421 E----------SPGGPWTFCGLLPLFDPPRHDSVDTIRRALNLGVCVKMITGDQLAIAKE 470
E TF G++ + DPPR + + +I+ + G+ V MITGD A
Sbjct: 574 EMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 633
Query: 471 TGRRLGM--ATNMYPSSSLLGRDKDENEALPVDELIEEADGFAGVFPEHKYEIVKILQEK 528
RR+G+ + GR+ D+ E A FA V P HK +IV+ LQ
Sbjct: 634 ICRRIGIFGENEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSF 693
Query: 529 KHVVGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXXLTEPGLSVIISAVLTSRAIF 588
+ MTGDGVNDAPALKK L + S I++AV RAI+
Sbjct: 694 DEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 753
Query: 589 QRMKNY 594
MK +
Sbjct: 754 NNMKQF 759
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 30/240 (12%)
Query: 96 LVPGDIISIKLGDIIPADARLL--EGDPLKIDQASSALTGESLPVTKKT----------- 142
+VPGDI+ + +GD +PAD R+L + L++DQ S LTGES+ V K T
Sbjct: 145 IVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQ--SILTGESVSVIKHTEPVPDPRAVNQ 202
Query: 143 --ADEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTEV-VGHFQQVLTSIG---NF 196
+ +FSG+ G+ +V TGV + GK + +TE QQ L G +
Sbjct: 203 DKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSK 262
Query: 197 CICSIAVGMILEIIVMF--PIQHRSYRDXX----XXXXXXXXXXXXXAMPTVLSVTLAIG 250
I I V + L I F P+ S+ +P V++ LA+G
Sbjct: 263 VISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALG 322
Query: 251 SHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFNRNMDKDMIVL 310
+ R++++ AI + + ++E + V+CSDKTGTLT N+++V + I +R +D D+ +L
Sbjct: 323 TRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI--IDR-IDGDLCLL 379
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 115/522 (22%), Positives = 200/522 (38%), Gaps = 86/522 (16%)
Query: 82 VLREGQWKEQDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQASSALTGESLPVTKK 141
V+R+G+ + GDI+ ++ G+ IP D ++EG+ +D+ S ++GE +PV K
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDE--SMISGEPVPVLKS 193
Query: 142 TADEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLV-DSTEVVGHFQQVLTSIGNFCICS 200
DEVF + G ++ G + + LV D+ Q++ + + I +
Sbjct: 194 KGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPT 253
Query: 201 IAVGMILEIIVMFPIQHR----SYRDXXXXXXXXXXXXXXXAMPTVLSVTLAIGSHRLSQ 256
+ + I I + I H ++ A PT L+V + G ++
Sbjct: 254 VLLVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKG----AE 309
Query: 257 QGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFNRNMDKDMIVLLAARAA 316
G + K A+E + + DKTGTLT + V ++ N D+ ++ LAA A
Sbjct: 310 LGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVT----DLVPLNGDERELLRLAAIAE 365
Query: 317 RLENQDAIDAAIINMLADPKEARANIKEVHFLPFNPVDKRTAITYIDSDGNWYRASKGAP 376
R ++ I AI+ K+A + E+ G P
Sbjct: 366 R-RSEHPIAEAIV------KKALEHGIEL----------------------------GEP 390
Query: 377 EQILNLCKE---KKEIAVKVHTIIDKFAERGLRSLAVAIQEVSEMTKES--PGGPWTFCG 431
E++ + E I V +++ F + +A++++ K + G
Sbjct: 391 EKVEVIAGEGVVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEG 450
Query: 432 LLPLFDPPRHDSVDTIRRALNLGVCVKMITGDQLAIAKETGRRLGMATNMYPSSSLLGRD 491
++ + D + + ++ +G+ V MITGD A+ R L +
Sbjct: 451 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 496
Query: 492 KDENEALPVDELIEEADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKXXXX 551
D +I E V P K E VK LQ K VV GDG+NDAPAL +
Sbjct: 497 ---------DLVIAE------VLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADLG 540
Query: 552 XXXXXXXXXXXXXXXXXLTEPGLSVIISAVLTSRAIFQRMKN 593
L L +++A+ SR ++K
Sbjct: 541 IAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQ 582
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 119/517 (23%), Positives = 194/517 (37%), Gaps = 76/517 (14%)
Query: 82 VLREGQWKEQDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQASSALTGESLPVTKK 141
V+R+G+ + GDI+ ++ G+ IP D ++EG+ +D+ S ++GE +PV K
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDE--SMISGEPVPVLKS 271
Query: 142 TADEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLV-DSTEVVGHFQQVLTSIGNFCICS 200
DEVF + G ++ G + + LV D+ Q++ + + I +
Sbjct: 272 KGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPT 331
Query: 201 IAVGMILEIIVMFPIQHR----SYRDXXXXXXXXXXXXXXXAMPTVLSVTLAIGSHRLSQ 256
+ + I I + I H ++ A PT L+V + G ++
Sbjct: 332 VLLVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKG----AE 387
Query: 257 QGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFNRNMDKDMIVLLAARAA 316
G + K A+E + + DKTGTLT + V ++ N D+ ++ LAA A
Sbjct: 388 LGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVT----DLVPLNGDERELLRLAAIAE 443
Query: 317 RLENQDAIDAAIINMLADPKEARANIKEVHFLPFNPVDKRTAITYIDSDGNWYRASKGAP 376
R ++ I AI+ + ++V + V A + + A
Sbjct: 444 R-RSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGV---VADGILVGNKRLMEDFGVAV 499
Query: 377 EQILNLCKEKKEIAVKVHTIIDKFAERGLRSLAVAIQEVSEMTKESPGGPWTFCGLLPLF 436
+ L EK E K I+ + I VS+ KES
Sbjct: 500 SNEVELALEKLEREAKTAVIVAR------NGRVEGIIAVSDTLKESA------------- 540
Query: 437 DPPRHDSVDTIRRALNLGVCVKMITGDQLAIAKETGRRLGMATNMYPSSSLLGRDKDENE 496
+V ++R +G+ V MITGD A+ R L +
Sbjct: 541 ----KPAVQELKR---MGIKVGMITGDNWRSAEAISRELNL------------------- 574
Query: 497 ALPVDELIEEADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKXXXXXXXXX 556
D +I E V P K E VK LQ K VV GDG+NDAPAL +
Sbjct: 575 ----DLVIAE------VLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADLGIAVGS 623
Query: 557 XXXXXXXXXXXXLTEPGLSVIISAVLTSRAIFQRMKN 593
L L +++A+ SR ++K
Sbjct: 624 GSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQ 660
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 113/280 (40%), Gaps = 64/280 (22%)
Query: 266 AIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFNRNMDKDMIVLLAARAARLENQDAID 325
A E + + DKTGTLT R V I FN + D +++ + A+ AR E+ I
Sbjct: 6 AFERAKDLQAVIFDKTGTLTEGRFGV--TDIVGFNHSED-ELLQIAASLEARSEH--PIA 60
Query: 326 AAIINMLADPKEARANIKEVHFLPFNPVDKRTAITYIDSDGNWYRASKGAPEQILNLCKE 385
AAI+ ++E +P V+ N R +P I
Sbjct: 61 AAIVEEAEKRGFGLTEVEEFRAIPGKGVEGIV---------NGRRYMVVSPGYI------ 105
Query: 386 KKEIAVKVHTIIDKFAERGLRSLAVAIQEVSEMTKESPGGPWTFCGLLPLFDPPRHDSVD 445
+E+ +K ++K ++G V I + E++ G++ L D R +S +
Sbjct: 106 -RELGIKTDESVEKLKQQG--KTVVFILKNGEVS-----------GVIALADRIRPESRE 151
Query: 446 TIRRALNLGVCVKMITGDQLAIAKETGRRLGMATNMYPSSSLLGRDKDENEALPVDELIE 505
I + +G+ M+TGD +AK LG+
Sbjct: 152 AISKLKAIGIKCMMLTGDNRFVAKWVAEELGL---------------------------- 183
Query: 506 EADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPAL 545
D FA V P K E VK +Q+ K+V M GDGVNDAPAL
Sbjct: 184 -DDYFAEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPAL 221
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 14/221 (6%)
Query: 81 KVLREGQWKEQDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQASSALTGESLPVTK 140
++ +G +E + GD++ ++ G+ IP D + EG +D+ S +TGE +PV K
Sbjct: 229 RIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDE--SMVTGEPIPVAK 285
Query: 141 KTADEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLV-DSTEVVGHFQQVLTSIGNFCIC 199
+ + +V + + G + G + + +V D+ Q++ ++ + +
Sbjct: 286 EASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVP 345
Query: 200 SIAVGMILEIIV---MFPIQHRSYRDXXXXXXXXXXXXXXXAMPTVLSVTLAIGSHRLSQ 256
++ + +L IV + P SY + T +S+ + +G + +Q
Sbjct: 346 AVILVAVLSFIVWALLGPQPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVG--KGAQ 403
Query: 257 QGAITKRMTAIEEMAGMDVLCSDKTGTLT-----LNRLTVD 292
G + K A+E M ++ L DKTGTLT L R+ D
Sbjct: 404 SGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTD 444
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 29/116 (25%)
Query: 432 LLPLFDPPRHDSVDTIRRALNLGVCVKMITGDQLAIAKETGRRLGMATNMYPSSSLLGRD 491
LL + DP + + +TI G+ + M+TGD A+ LG
Sbjct: 548 LLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLG--------------- 592
Query: 492 KDENEALPVDELIEEADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKK 547
+ +++ E + PE K IV L++K +V M GDGVNDAPAL K
Sbjct: 593 --------IKKVVAE------IMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAK 634
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 113/280 (40%), Gaps = 64/280 (22%)
Query: 266 AIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFNRNMDKDMIVLLAARAARLENQDAID 325
A E + + DKTGTLT R V I FN + D +++ + A+ AR E+ I
Sbjct: 6 AFERAKDLQAVIFDKTGTLTEGRFGV--TDIVGFNHSED-ELLQIAASLEARSEH--PIA 60
Query: 326 AAIINMLADPKEARANIKEVHFLPFNPVDKRTAITYIDSDGNWYRASKGAPEQILNLCKE 385
AAI+ ++E +P V+ N R +P I
Sbjct: 61 AAIVEEAEKRGFGLTEVEEFRAIPGKGVEGIV---------NGRRYMVVSPGYI------ 105
Query: 386 KKEIAVKVHTIIDKFAERGLRSLAVAIQEVSEMTKESPGGPWTFCGLLPLFDPPRHDSVD 445
+E+ +K ++K ++G V I + E++ G++ L D R +S +
Sbjct: 106 -RELGIKTDESVEKLKQQG--KTVVFILKNGEVS-----------GVIALADRIRPESRE 151
Query: 446 TIRRALNLGVCVKMITGDQLAIAKETGRRLGMATNMYPSSSLLGRDKDENEALPVDELIE 505
I + +G+ M+TGD +AK LG+
Sbjct: 152 AISKLKAIGIKCMMLTGDNRFVAKWVAEELGL---------------------------- 183
Query: 506 EADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPAL 545
D FA V P K E VK +Q+ K+V M GDGVNDAPAL
Sbjct: 184 -DDYFAEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPAL 221
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 89 KEQ-DAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQASSALTGESLPVTKKTADEVF 147
+EQ D ++ GDII + G P D R++EG + +D+ S +TGE++PV KK V
Sbjct: 34 EEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDE--SLITGEAMPVAKKPGSTVI 90
Query: 148 SGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTE 181
+GS ++G + G + + LV+ +
Sbjct: 91 AGSINQNGSLLICATHVGADTTLSQIVKLVEEAQ 124
>pdb|2O98|P Chain P, Structure Of The 14-3-3 H+-Atpase Plant Complex
pdb|2O98|Q Chain Q, Structure Of The 14-3-3 H+-Atpase Plant Complex
Length = 52
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 855 EIHTLRGHVESVVRLKNLDLNVIQAAHTV 883
E+HTL+GHVESVV+LK LD+ IQ ++ +
Sbjct: 24 ELHTLKGHVESVVKLKGLDIETIQQSYDI 52
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 30/162 (18%)
Query: 431 GLLPLFDPPRHDSVDTIRRALNLGVCVKMITGDQLAIAKETGRRLGMATNMYPSSSLLGR 490
G++ + D + + ++ +G+ V MITGD + S+ + R
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDN-----------------WRSAEAISR 198
Query: 491 DKDENEALPVDELIEEADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKXXX 550
+ L +D +I E V P K E VK LQ K VV GDG+NDAPAL +
Sbjct: 199 E------LNLDLVIAE------VLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADL 245
Query: 551 XXXXXXXXXXXXXXXXXXLTEPGLSVIISAVLTSRAIFQRMK 592
L L +++A+ SR ++K
Sbjct: 246 GIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 30/162 (18%)
Query: 431 GLLPLFDPPRHDSVDTIRRALNLGVCVKMITGDQLAIAKETGRRLGMATNMYPSSSLLGR 490
G++ + D + + ++ +G+ V MITGD + S+ + R
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDN-----------------WRSAEAISR 198
Query: 491 DKDENEALPVDELIEEADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKXXX 550
+ L +D +I E V P K E VK LQ K VV GDG+NDAPAL +
Sbjct: 199 E------LNLDLVIAE------VLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADL 245
Query: 551 XXXXXXXXXXXXXXXXXXLTEPGLSVIISAVLTSRAIFQRMK 592
L L +++A+ SR ++K
Sbjct: 246 GIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 82 VLREGQWKEQDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQASSALTGESLPVTKK 141
V+R+G+ + GDI+ ++ G+ IP D ++EG+ +D+ S ++GE +PV K
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDE--SMISGEPVPVLKS 72
Query: 142 TADEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVD 178
DEVF + G ++ G + + LV+
Sbjct: 73 KGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVE 109
>pdb|3M50|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
EPIBESTAT
pdb|3M51|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
PYRROLIDO
pdb|4DX0|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A
PYRAZOLE Derivative
Length = 31
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 855 EIHTLRGHVESVVRLKNLDLNVIQAAHTV 883
E+HTL+GHVE+VV+LK LD+ IQ ++ +
Sbjct: 3 ELHTLKGHVEAVVKLKGLDIETIQQSYDI 31
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 510 FAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPAL 545
A V P K E VK LQ K VV GDG+NDAPAL
Sbjct: 65 IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPAL 99
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 510 FAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPAL 545
A V P K E VK LQ K VV GDG+NDAPAL
Sbjct: 186 IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPAL 220
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 73/188 (38%), Gaps = 31/188 (16%)
Query: 275 VLCSD--KTGTLTLNRLTVDRNLIEVFNRNMDKDMIVLLAARAARLENQDAIDAAIINML 332
V+CSD + G R +DR IEVF +KD I LA +D I++
Sbjct: 133 VVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIK-LAKEGVDYFKSKGVDIIIVDTA 191
Query: 333 ADPKEARANIKEVHFLPFNPVDKRTAITYIDSDGNWYRASKGAPEQILNLCKEKKEIAVK 392
KE +A I+E+ + N + I ID + A Q L KE I
Sbjct: 192 GRHKEDKALIEEMKQIS-NVIHPHEVILVIDGT-----IGQQAYNQALAF-KEATPIGSI 244
Query: 393 VHTIIDKFAERGLRSLAVAIQEVSEMTKESPGGPWTFCGL------LPLFDPPRHDSVDT 446
+ T +D A+ G AVA + G P F G + FDPPR
Sbjct: 245 IVTKLDGSAKGGGALSAVA----------ATGAPIKFIGTGEKIDDIEPFDPPRF----- 289
Query: 447 IRRALNLG 454
+ R L LG
Sbjct: 290 VSRLLGLG 297
>pdb|3EMU|A Chain A, Crystal Structure Of A Leucine Rich Repeat And Phosphatase
Domain Containing Protein From Entamoeba Histolytica
Length = 161
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 492 KDENEALPVDELIEEADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPAL 545
KD+ + L +D + EE P I++ +Q K+ V+ ++G GVN APA+
Sbjct: 51 KDQCDILRLDIVSEEGHQLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNKAPAI 104
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 321 QDAIDAAIINMLADPKEARA---NIKEVHFLPFNPVDKRTAITYIDSDGNWYRASKGAPE 377
++ +D A++ D + AR+ +++ +PF+ +R ++ ++ + KGA +
Sbjct: 33 KNLLDTAVLEG-TDEESARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQ 91
Query: 378 QILNLCKEKKE----------IAVKVHTIIDKFAERGLRSLAVAIQ 413
+ILN+C + + + K+ + D +GLR +AVA +
Sbjct: 92 EILNVCSQVRHNGEIVPLDDIMLRKIKRVTDTLNRQGLRVVAVATK 137
>pdb|3J04|C Chain C, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|F Chain F, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 148
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 293 RNLIEVFNRNMDKDMIVLLAARAARLENQDAIDAAIINMLADPKEARANIKEVHFLPFNP 352
+ ++F+R D ++ R Q+ +A ++ +L +PK N+K + F F P
Sbjct: 10 KEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGNPKSDEMNLKTLKFEQFLP 69
Query: 353 VDKRTA 358
+ + A
Sbjct: 70 MMQTIA 75
>pdb|1BR1|B Chain B, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|D Chain D, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|F Chain F, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|H Chain H, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|B Chain B, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|D Chain D, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|F Chain F, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|H Chain H, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1I84|T Chain T, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|W Chain W, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|3DTP|C Chain C, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
pdb|3DTP|D Chain D, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 150
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 293 RNLIEVFNRNMDKDMIVLLAARAARLENQDAIDAAIINMLADPKEARANIKEVHFLPFNP 352
+ ++F+R D ++ R Q+ +A ++ +L +PK N+K + F F P
Sbjct: 12 KEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGNPKSDEMNLKTLKFEQFLP 71
Query: 353 VDKRTA 358
+ + A
Sbjct: 72 MMQTIA 77
>pdb|2P1G|A Chain A, Crystal Structure Of A Putative Xylanase From Bacteroides
Fragilis
pdb|2P1G|B Chain B, Crystal Structure Of A Putative Xylanase From Bacteroides
Fragilis
Length = 249
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 350 FNPVDKRTAITYIDSDGNWYRASKGAPEQILNLCKEKKEIAVK-VHTI-IDKFAERGL 405
++P ++ +++Y+ + Y++ K +PE + + K +K ++ K VH + DK GL
Sbjct: 112 YSPFKQKLSLSYMSTHPELYKSLKNSPENVAQMAKYEKALSGKEVHYLPKDKLEPDGL 169
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 29/104 (27%)
Query: 437 DPPRHDSVDTIRRALNLGVCVKMITGDQLAIAKETGRRLGMATNMYPSSSLLGRDKDENE 496
D PR + D + + N G+ + +++GD+ KE + L +
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQ------------------ 176
Query: 497 ALPVDELIEEADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVN 540
+ ++ + PE K I++ L++ + V M GDGVN
Sbjct: 177 -----------EYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 29/104 (27%)
Query: 437 DPPRHDSVDTIRRALNLGVCVKMITGDQLAIAKETGRRLGMATNMYPSSSLLGRDKDENE 496
D PR + D + + N G+ + +++GD+ KE + L +
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQ------------------ 176
Query: 497 ALPVDELIEEADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVN 540
+ ++ + PE K I++ L++ + V M GDGVN
Sbjct: 177 -----------EYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 29/104 (27%)
Query: 437 DPPRHDSVDTIRRALNLGVCVKMITGDQLAIAKETGRRLGMATNMYPSSSLLGRDKDENE 496
D PR + D + + N G+ + +++GD+ KE + L +
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQ------------------ 176
Query: 497 ALPVDELIEEADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVN 540
+ ++ + PE K I++ L++ + V M GDGVN
Sbjct: 177 -----------EYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,066,348
Number of Sequences: 62578
Number of extensions: 881675
Number of successful extensions: 2469
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2361
Number of HSP's gapped (non-prelim): 70
length of query: 883
length of database: 14,973,337
effective HSP length: 107
effective length of query: 776
effective length of database: 8,277,491
effective search space: 6423333016
effective search space used: 6423333016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)