BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002770
(883 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 353 bits (907), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 266/798 (33%), Positives = 405/798 (50%), Gaps = 99/798 (12%)
Query: 78 VSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTXXXXXXXXXXXXXXXXLGK 137
V+GM C CV +++ + + + V+ V VN+ TETA I+ K
Sbjct: 8 VTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDE------------------K 49
Query: 138 RLMECGFEAKRRVS---GTGVAENVKKWKELAKKREDLLVKSRNRVALAWTLVALCCGSH 194
R+ FE +RV G GV V + ++ + E L R A+ V L +H
Sbjct: 50 RI---DFETIKRVIEDLGYGV---VDEQAAVSAEVEHLSRMKRKLYVAAFAGVLLLFLAH 103
Query: 195 ASHILHSLGIHIAHGPLWELLDNSYVKXXXXXXXXXXPGRASLMAFRKGSPNMNSLVGFG 254
I + + +LL + +A+ A R+ + NM+ + G
Sbjct: 104 F--------ISLPYEDFVQLL----IALPAIFYSGSSIFKAAFSALRRRTLNMDVMYSMG 151
Query: 255 SIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVS 314
AFL S++S L + SF+E V+LL F+LLGR+LE RA+ R + +L+ L +
Sbjct: 152 VGAAFLASVLSTAGV-LPREYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQA 210
Query: 315 TQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSV 374
+ V+ D + VP +++ VGD V+V PGE IPVDG V+ G S
Sbjct: 211 KTA---------------VVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY 255
Query: 375 VDESMLSGESLPVFKEEGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREA 434
VDESM+SGE +PV K +G V TIN G L+I A G +++++IV +VE+A G +
Sbjct: 256 VDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKP 315
Query: 435 PIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPXXXXXXXXX 494
PIQRLAD + F+ +V+ ++ + F +WY+I P
Sbjct: 316 PIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA----------------PLLFAFTTLI 359
Query: 495 XXXXXXCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGK 554
CPCA GLATPTA+ VG GA+ G+LI+ D LE ++ + DKTGTLT+GK
Sbjct: 360 AVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGK 419
Query: 555 PAVFNVASFVYDESEILKIAAAVEKTATHPIAKAIVNKA--ESLNLTSPITRGQLAEPGF 612
P V ++ DE E+L++AA E+ + HPIA+AIV KA + L P +A G
Sbjct: 420 PEVTDLVPLNGDERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIA--GE 477
Query: 613 GILGEVDGRLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSS-ELASPSNYSKSVVYV 671
G++ DG LV G+ ++ AV+++ L +K+ V V
Sbjct: 478 GVVA--DGILV---------------GNKRLMEDFGVAVSNEVELALEKLEREAKTAVIV 520
Query: 672 XXXXXXXXXXXXXSDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYI 731
SD+L+ A+ V+ L++ GIK +++GD + A ++E+ + + +
Sbjct: 521 -ARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL--DLV 577
Query: 732 NSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASI 791
+ + P QKSE + LQ VA VGDGINDAP+LA AD+GIA + + + A + I
Sbjct: 578 IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIA--VGSGSDVAVESGDI 634
Query: 792 ILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSG 851
+L+ + L VV A+ L++ TM+K+ QN+ WA+ YNV+ IP AAG L P + P +G
Sbjct: 635 VLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAG 694
Query: 852 GLMALSSIFVVSNSLLLQ 869
MA+SS+ VV+NSLLL+
Sbjct: 695 LAMAMSSVSVVANSLLLR 712
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 345 bits (885), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 227/638 (35%), Positives = 343/638 (53%), Gaps = 58/638 (9%)
Query: 234 RASLMAFRKGSPNMNSLVGFGSIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVLLGRS 293
+A+ A R+ + NM+ + G AFL S++S L + SF+E V+LL F+LLGR+
Sbjct: 53 KAAFSALRRRTLNMDVMYSMGVGAAFLASVLST-AGVLPREYSFYETSVLLLAFLLLGRT 111
Query: 294 LEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDS 353
LE RA+ R + +L+ L + + V+ D + VP +++ VGD
Sbjct: 112 LEARAKSRTGEAIKKLVGLQAKTA---------------VVIRDGKEIAVPVEEVAVGDI 156
Query: 354 VLVLPGETIPVDGRVLAGRSVVDESMLSGESLPVFKEEGFTVSAGTINWDGPLRIEACST 413
V+V PGE IPVDG V+ G S VDESM+SGE +PV K +G V TIN G L+I A
Sbjct: 157 VIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRV 216
Query: 414 GSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDV 473
G +++++IV +VE+A G + PIQRLAD + F+ +V+ ++ + F +WY+I
Sbjct: 217 GGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA----- 271
Query: 474 LLSDMAGPNGNPXXXXXXXXXXXXXXXCPCALGLATPTAILVGTSLGAKQGLLIRGGDVL 533
P CPCA GLATPTA+ VG GA+ G+LI+ D L
Sbjct: 272 -----------PLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADAL 320
Query: 534 ERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTATHPIAKAIVNKA 593
E ++ + DKTGTLT+GKP V ++ DE E+L++AA E+ + HPIA+AIV KA
Sbjct: 321 EVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAAIAERRSEHPIAEAIVKKA 380
Query: 594 --ESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQKQGDHSDVQHLEHAV 651
+ L P +A G G++ DG LV G+ ++ AV
Sbjct: 381 LEHGIELGEPEKVEVIA--GEGVVA--DGILV---------------GNKRLMEDFGVAV 421
Query: 652 THQSSELASPSNYSKSVVYVXXXXXXXXXXXXXSDSLRHDAEHTVRSLQQKGIKTLLLSG 711
+++ + SD+L+ A+ V+ L++ GIK +++G
Sbjct: 422 SNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITG 481
Query: 712 DREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALAD 771
D + A ++E+ + + + + + P QKSE + LQ VA VGDGINDAP+LA AD
Sbjct: 482 DNWRSAEAISRELNL--DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQAD 538
Query: 772 VGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIP 831
+GIA + + + A + I+L+ + L VV A+ L++ TM+K+ QN+ WA+ YNV+ IP
Sbjct: 539 LGIA--VGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVILIP 596
Query: 832 IAAGALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQ 869
AAG L P + P +G MA+SS+ VV+NSLLL+
Sbjct: 597 AAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLR 634
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 337 bits (863), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 224/640 (35%), Positives = 345/640 (53%), Gaps = 56/640 (8%)
Query: 239 AFRKGSPNMNSLVGFGSIVAFLISLVSLLKPELEWDA---------SFFEEPVMLLGFVL 289
+ + G NM +L+ G VA++ S+V++L P + A +FE ++ VL
Sbjct: 140 SLKTGQLNMFTLIAMGIGVAWIYSMVAVLWPGVFPHAFRSQEGVVAVYFEAAAVITTLVL 199
Query: 290 LGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIR 349
LG+ LE +AR + S + LL LV + + E GS EV D++
Sbjct: 200 LGQVLELKAREQTGSAIRALLKLVPESAHRI---KEDGSEE-----------EVSLDNVA 245
Query: 350 VGDSVLVLPGETIPVDGRVLAGRSVVDESMLSGESLPVFKEEGFTVSAGTINWDGPLRIE 409
VGD + V PGE IPVDG V GRS VDESM++GE +PV KE V TIN G ++
Sbjct: 246 VGDLLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIPVAKEASAKVIGATINQTGSFVMK 305
Query: 410 ACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQI 469
A GS++M+++IV MV +AQ APIQRLAD ++G FV +V+ ++ +F W +G Q
Sbjct: 306 ALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALLGPQ- 364
Query: 470 FPDVLLSDMAGPNGNPXXXXXXXXXXXXXXXCPCALGLATPTAILVGTSLGAKQGLLIRG 529
P + +A CPCALGLATP +I+VG GA+ G+LI+
Sbjct: 365 -PALSYGLIAA-------------VSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKN 410
Query: 530 GDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTATHPIAKAI 589
+ LER+ +++ L +DKTGTLTEG P + + + + E L +AAA+E + HP+A AI
Sbjct: 411 AEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTDDFVEDNALALAAALEHQSEHPLANAI 470
Query: 590 VNKAESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQKQGDHSDVQHLEH 649
V+ A+ L+ A G G++G+VDG VA+G + E GD++ +
Sbjct: 471 VHAAKEKGLSLGSVEAFEAPTGKGVVGQVDGHHVAIGNARLMQEH---GGDNAPLFEKAD 527
Query: 650 AVTHQSSELASPSNYSKSVVYVXXXXXXXXXXXXXSDSLRHDAEHTVRSLQQKGIKTLLL 709
+ + + + + K+V + D ++ T+ LQQ GI+ ++L
Sbjct: 528 ELRGKGASVMFMAVDGKTVALL-----------VVEDPIKSSTPETILELQQSGIEIVML 576
Query: 710 SGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLAL 769
+GD + A A +GI K + + + P+ KS ++S L+ G VAM GDG+NDAP+LA
Sbjct: 577 TGDSKRTAEAVAGTLGIKK--VVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAK 634
Query: 770 ADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVA 829
AD+GIA+ + A +A + LL L + A L+++TM+ + QNL +A YNV+
Sbjct: 635 ADIGIAMG--TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNVLG 692
Query: 830 IPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQ 869
+P+AAG L P ++P ++ MALSS+ V+ N+L L+
Sbjct: 693 VPLAAGVLYPLTGLLLSPMIAAAAMALSSVSVIINALRLK 732
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 162/303 (53%), Gaps = 28/303 (9%)
Query: 516 GTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAA 575
G+ GA+ G+LI+ D LE ++ + DKTGTLT+GKP V ++ DE E+L++AA
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAA 68
Query: 576 AVEKTATHPIAKAIVNKA--ESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYE 633
E+ + HPIA+AIV KA + L P +A G G++ DG LV
Sbjct: 69 IAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIA--GEGVVA--DGILV---------- 114
Query: 634 RFQKQGDHSDVQHLEHAVTHQSS-ELASPSNYSKSVVYVXXXXXXXXXXXXXSDSLRHDA 692
G+ ++ AV+++ L +K+ V V SD+L+ A
Sbjct: 115 -----GNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAV-SDTLKESA 168
Query: 693 EHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGH 752
+ V+ L++ GIK +++GD + A ++E+ + + + + + P QKSE + LQ
Sbjct: 169 KPAVQELKRMGIKVGMITGDNWRSAEAISRELNL--DLVIAEVLPHQKSEEVKKLQAK-E 225
Query: 753 HVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATM 812
VA VGDGINDAP+LA AD+GIA + + + A + I+L+ + L VV A+ L++ TM
Sbjct: 226 VVAFVGDGINDAPALAQADLGIA--VGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTM 283
Query: 813 AKV 815
+K+
Sbjct: 284 SKI 286
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 161/303 (53%), Gaps = 28/303 (9%)
Query: 516 GTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAA 575
G+ GA+ G+LI+ D LE ++ + DKTGTLT+GKP V ++ DE E+L++AA
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAA 68
Query: 576 AVEKTATHPIAKAIVNKA--ESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYE 633
E+ + PIA+AIV KA + L P +A G G++ DG LV
Sbjct: 69 IAERRSEQPIAEAIVKKALEHGIELGEPEKVEVIA--GEGVVA--DGILV---------- 114
Query: 634 RFQKQGDHSDVQHLEHAVTHQSS-ELASPSNYSKSVVYVXXXXXXXXXXXXXSDSLRHDA 692
G+ ++ AV+++ L +K+ V V SD+L+ A
Sbjct: 115 -----GNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAV-SDTLKESA 168
Query: 693 EHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGH 752
+ V+ L++ GIK +++GD + A ++E+ + + + + + P QKSE + LQ
Sbjct: 169 KPAVQELKRMGIKVGMITGDNWRSAEAISRELNL--DLVIAEVLPHQKSEEVKKLQAK-E 225
Query: 753 HVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATM 812
VA VGDGINDAP+LA AD+GIA + + + A + I+L+ + L VV A+ L++ TM
Sbjct: 226 VVAFVGDGINDAPALAQADLGIA--VGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTM 283
Query: 813 AKV 815
+K+
Sbjct: 284 SKI 286
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 131/546 (23%), Positives = 227/546 (41%), Gaps = 77/546 (14%)
Query: 333 VLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSV--VDESMLSGESLPVFKE 390
V+ D E+ ++ GD + V G IP DGR++ + VD+S L+GESL V K
Sbjct: 181 VVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKH 240
Query: 391 EGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYS 450
+G V A + G + +TG N+ + + ++V A G + + I +
Sbjct: 241 KGDQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLIL 300
Query: 451 VMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPXXXXXXXXXXXXXXXCPCALGLATP 510
V+ + +Y NP P L
Sbjct: 301 VIFTLLIVWVSSFY-----------------RSNPIVQILEFTLAITIIGVPVGLPAVVT 343
Query: 511 TAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEI 570
T + VG + AK+ +++ +E LA ++ L DKTGTLT+ K ++ + + + E
Sbjct: 344 TTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVAGVDPED 403
Query: 571 LKIAA------------AVEKT-----ATHPIAKAIVNKAESLNLT--SPITRGQLAEPG 611
L + A A++K +P AK++++K + L P+++ +A
Sbjct: 404 LMLTACLAASRKKKGIDAIDKAFLKSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVA--- 460
Query: 612 FGILGEVDG-RLVAV-GTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVV 669
++ G R+ V G +V + ++ DH + ++ A ++ +E A+ S V
Sbjct: 461 --VVESPQGERITCVKGAPLFVLKTVEE--DHPIPEEVDQAYKNKVAEFATRGFRSLGVA 516
Query: 670 YVXXXXXXXXXXXXXS-DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK 728
D RHD TV + G+ +L+GD T++++G+G
Sbjct: 517 RKRGEGSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGT 576
Query: 729 EYINSS---------------------------LTPQQKSEVISTLQTSGHHVAMVGDGI 761
N+ + PQ K V+ LQ G+ VAM GDG+
Sbjct: 577 NIYNAERLGLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGV 636
Query: 762 NDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSW 821
NDAPSL AD GIA +E +AA +AA I+ L L ++DAL ++ ++Y + +
Sbjct: 637 NDAPSLKKADTGIA--VEGSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVY 694
Query: 822 AVAYNV 827
+A ++
Sbjct: 695 RIALSI 700
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 148/296 (50%), Gaps = 22/296 (7%)
Query: 527 IRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTATHPIA 586
+R ER + + DKTGTLTEG+ V ++ F + E E+L+IAA++E + HPIA
Sbjct: 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNHSEDELLQIAASLEARSEHPIA 60
Query: 587 KAIVNKAESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQKQGDHSDVQH 646
AIV +AE A PG G+ G V+GR V + ++ E K
Sbjct: 61 AAIVEEAEKRGFGLTEVEEFRAIPGKGVEGIVNGRRYMVVSPGYIRELGIK--------- 111
Query: 647 LEHAVTHQSSELASPSNYSKSVVYVXXXXXXXXXXXXXSDSLRHDAEHTVRSLQQKGIKT 706
T +S E K+VV++ +D +R ++ + L+ GIK
Sbjct: 112 -----TDESVE--KLKQQGKTVVFI-LKNGEVSGVIALADRIRPESREAISKLKAIGIKC 163
Query: 707 LLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPS 766
++L+GD A+E+G+ + + + P +K+E + +Q + AMVGDG+NDAP+
Sbjct: 164 MMLTGDNRFVAKWVAEELGLDDYF--AEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPA 220
Query: 767 LALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWA 822
LA ADVGIA I A + A A I+L+ N V ++L++ T +K + +W+
Sbjct: 221 LAQADVGIA--IGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKFHGLSAWS 274
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 145/289 (50%), Gaps = 22/289 (7%)
Query: 527 IRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTATHPIA 586
+R ER + + DKTGTLTEG+ V ++ F + E E+L+IAA++E + HPIA
Sbjct: 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNHSEDELLQIAASLEARSEHPIA 60
Query: 587 KAIVNKAESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQKQGDHSDVQH 646
AIV +AE A PG G+ G V+GR V + ++ E K
Sbjct: 61 AAIVEEAEKRGFGLTEVEEFRAIPGKGVEGIVNGRRYMVVSPGYIRELGIK--------- 111
Query: 647 LEHAVTHQSSELASPSNYSKSVVYVXXXXXXXXXXXXXSDSLRHDAEHTVRSLQQKGIKT 706
T +S E K+VV++ +D +R ++ + L+ GIK
Sbjct: 112 -----TDESVE--KLKQQGKTVVFI-LKNGEVSGVIALADRIRPESREAISKLKAIGIKC 163
Query: 707 LLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPS 766
++L+GD A+E+G+ + + + P +K+E + +Q + AMVGDG+NDAP+
Sbjct: 164 MMLTGDNRFVAKWVAEELGLDDYF--AEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPA 220
Query: 767 LALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKV 815
LA ADVGIA I A + A A I+L+ N V ++L++ T +K+
Sbjct: 221 LAQADVGIA--IGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKL 267
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 149/290 (51%), Gaps = 28/290 (9%)
Query: 528 RGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTATHPIAK 587
+ D LE ++ + DKTGTLT+GKP V ++ DE E+L++AA E+ + HPIA+
Sbjct: 1 KNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAAIAERRSEHPIAE 60
Query: 588 AIVNKA--ESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQKQGDHSDVQ 645
AIV KA + L P +A G G++ DG LV G+ +
Sbjct: 61 AIVKKALEHGIELGEPEKVEVIA--GEGVVA--DGILV---------------GNKRLXE 101
Query: 646 HLEHAVTHQSS-ELASPSNYSKSVVYVXXXXXXXXXXXXXSDSLRHDAEHTVRSLQQKGI 704
AV+++ L +K+ V V SD+L+ A+ V+ L++ GI
Sbjct: 102 DFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAV-SDTLKESAKPAVQELKRXGI 160
Query: 705 KTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDA 764
K ++GD + A ++E+ + + + + + P QKSE + LQ VA VGDGINDA
Sbjct: 161 KVGXITGDNWRSAEAISRELNL--DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDA 217
Query: 765 PSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAK 814
P+LA AD+GIA + + + A + I+L+ + L VV A+ L++ T +K
Sbjct: 218 PALAQADLGIA--VGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTXSK 265
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 86/280 (30%), Positives = 144/280 (51%), Gaps = 44/280 (15%)
Query: 523 QGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTAT 582
+G++I+ +V E++ ID + DKTGTLT G P V F+ D S L AA+VE ++
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFDKTGTLTYGTPIV---TQFIGD-SLSLAYAASVEALSS 67
Query: 583 HPIAKAIVNKAESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQKQGDHS 642
HPIAKAIV A+ + + G G+ G++ +++ V +K +++
Sbjct: 68 HPIAKAIVKYAKEQGVKILEVKDFKEISGIGVRGKISDKIIEV----------KKAENNN 117
Query: 643 DVQHLEHAVTHQSSELASPSNYSKSVVYVXXXXXXXXXXXXXSDSLRHDAEHTVRSLQQK 702
D+ AV +AS SD R + + + L+ +
Sbjct: 118 DI-----AVYINGEPIAS---------------------FNISDVPRPNLKDYLEKLKNE 151
Query: 703 GIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGIN 762
G+K ++LSGD+E+ V +KE+ I + Y S+L+P+ K +I L+ +G+ V M+GDG+N
Sbjct: 152 GLKIIILSGDKEDKVKELSKELNIQEYY--SNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
Query: 763 DAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVV 802
DA +LALADV +A+ + + A IIL+ N + ++
Sbjct: 210 DAAALALADVSVAMGNGV--DISKNVADIILVSNDIGTLL 247
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 99.0 bits (245), Expect = 1e-20, Method: Composition-based stats.
Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 44/280 (15%)
Query: 523 QGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTAT 582
+G++I+ +V E++ ID + +KTGTLT G P V F+ D S L AA+VE ++
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIV---TQFIGD-SLSLAYAASVEALSS 67
Query: 583 HPIAKAIVNKAESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQKQGDHS 642
HPIAKAIV A+ + + G G+ G++ +++ V +K +++
Sbjct: 68 HPIAKAIVKYAKEQGVKILEVKDFKEISGIGVRGKISDKIIEV----------KKAENNN 117
Query: 643 DVQHLEHAVTHQSSELASPSNYSKSVVYVXXXXXXXXXXXXXSDSLRHDAEHTVRSLQQK 702
D+ AV +AS SD R + + + L+ +
Sbjct: 118 DI-----AVYINGEPIAS---------------------FNISDVPRPNLKDYLEKLKNE 151
Query: 703 GIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGIN 762
G+K ++LSGD+E+ V +KE+ I + Y S+L+P+ K +I L+ +G+ V M+GDG+N
Sbjct: 152 GLKIIILSGDKEDKVKELSKELNIQEYY--SNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
Query: 763 DAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVV 802
DA +LALADV +A+ + + A IIL+ N + ++
Sbjct: 210 DAAALALADVSVAMGNGV--DISKNVADIILVSNDIGTLL 247
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 99.0 bits (245), Expect = 1e-20, Method: Composition-based stats.
Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 44/280 (15%)
Query: 523 QGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTAT 582
+G++I+ +V E++ ID + +KTGTLT G P V F+ D S L AA+VE ++
Sbjct: 12 KGMIIKNSNVYEKIKEIDTIIFNKTGTLTYGTPIV---TQFIGD-SLSLAYAASVEALSS 67
Query: 583 HPIAKAIVNKAESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQKQGDHS 642
HPIAKAIV A+ + + G G+ G++ +++ V +K +++
Sbjct: 68 HPIAKAIVKYAKEQGVKILEVKDFKEISGIGVRGKISDKIIEV----------KKAENNN 117
Query: 643 DVQHLEHAVTHQSSELASPSNYSKSVVYVXXXXXXXXXXXXXSDSLRHDAEHTVRSLQQK 702
D+ AV +AS SD R + + + L+ +
Sbjct: 118 DI-----AVYINGEPIAS---------------------FNISDVPRPNLKDYLEKLKNE 151
Query: 703 GIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGIN 762
G+K ++LSGD+E+ V +KE+ I + Y S+L+P+ K +I L+ +G+ V M+GDG+N
Sbjct: 152 GLKIIILSGDKEDKVKELSKELNIQEYY--SNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
Query: 763 DAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVV 802
DA +LALADV +A+ + + A IIL+ N + ++
Sbjct: 210 DAAALALADVSVAMGNGV--DISKNVADIILVSNDIGTLL 247
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 303 SSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETI 362
S + +L+SL +T++ +V S DN+L S+ +V + ++ GD + V+PG
Sbjct: 6 SEALAKLISLQATEATIVTLDS------DNILLSEE---QVDVELVQRGDIIKVVPGGKF 56
Query: 363 PVDGRVLAGRSVVDESMLSGESLPVFKEEGFTVSAGTINWDGPLRIEACSTGSNSMISKI 422
PVDGRV+ G S+VDES+++GE++PV K+ G TV AG+IN +G L I A G+++ +S+I
Sbjct: 57 PVDGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLICATHVGADTTLSQI 116
Query: 423 VSMVEEAQ 430
V +VEEAQ
Sbjct: 117 VKLVEEAQ 124
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 65/99 (65%)
Query: 333 VLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLSGESLPVFKEEG 392
V+ D + VP +++ VGD V+V PGE IPVDG V+ G S VDESM+SGE +PV K +G
Sbjct: 15 VVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKG 74
Query: 393 FTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQG 431
V TIN G L+I A G +++++IV +VE+A G
Sbjct: 75 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMG 113
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 37/191 (19%)
Query: 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSS----------- 734
D RHD+ T+R G+ +++GD+ T + +G+G SS
Sbjct: 487 DPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKDANL 546
Query: 735 -----------------LTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQ 777
+ P+ K E++ LQ H V M GDG+NDAP+L AD+GIA
Sbjct: 547 ASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIA-- 604
Query: 778 IEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAG-- 835
+ +AA A+ I+L LS ++ A+ ++A ++ +AV+ + I I G
Sbjct: 605 VADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVS---ITIRIVFGFM 661
Query: 836 --ALLPQYDFA 844
AL+ ++DF+
Sbjct: 662 LIALIWEFDFS 672
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 27/261 (10%)
Query: 351 GDSVLVLPGETIPVDGRVLAGRSV-VDESMLSGESLPVFKEEGFTVSAGTINWDGPLRIE 409
GD V + G+ IP D R+L G + VD+S L+GESLPV K G V +G+ G +
Sbjct: 151 GDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAV 210
Query: 410 ACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQI 469
+TG ++ K +V ++ + Q++ AI + S+ Y I +
Sbjct: 211 VIATGVHTFFGKAAHLV-DSTNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQRRK 269
Query: 470 FPDVLLSDMAGPNGNPXXXXXXXXXXXXXXXCPCALGLATPTAILVGTSLGAKQGLLIRG 529
+ D + + + G P A+ + +G+ ++QG + +
Sbjct: 270 YRDGIDNLLVLLIGG----------------IPIAMPTVLSVTMAIGSHRLSQQGAITKR 313
Query: 530 GDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTATHPIAKAI 589
+E +A +D L DKTGTLT K +V D++ + VEK A A+
Sbjct: 314 MTAIEEMAGMDVLCSDKTGTLTLNKLSV--------DKNLVEVFCKGVEKDQVLLFA-AM 364
Query: 590 VNKAESLNLTSPITRGQLAEP 610
++ E+ + G LA+P
Sbjct: 365 ASRVENQDAIDAAMVGMLADP 385
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 34/187 (18%)
Query: 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGI-------------GKEYIN 732
D R + +++ + GI+ ++++GD + A + +GI G+E+ +
Sbjct: 601 DPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDD 660
Query: 733 SSLT----------------PQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIAL 776
L P KS+++ LQ+ AM GDG+NDAP+L A++GIA+
Sbjct: 661 LPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAM 720
Query: 777 QIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYN---VVAIPIA 833
+ A TA+ ++L + S +V A++ +A + Q + + ++ N VV I +
Sbjct: 721 G--SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLT 778
Query: 834 AGALLPQ 840
A LP+
Sbjct: 779 AALGLPE 785
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 96/238 (40%), Gaps = 27/238 (11%)
Query: 347 DIRVGDSVLVLPGETIPVDGRVLAGRSV---VDESMLSGESLPVFKEEGFTVSAGTINWD 403
DI GD V V G+ +P D R+L+ +S VD+S+L+GES+ V K +N D
Sbjct: 144 DIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQD 203
Query: 404 GP--------------LRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVY 449
L I A +TG ++ I KI + + + P+Q+ D G +
Sbjct: 204 KKNMLFSGTNIAAGKALGIVA-TTGVSTEIGKIRDQMAATEQDKTPLQQKLDEF-GEQLS 261
Query: 450 SVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPXXXXXXXXXXXXXXXCPCALGLAT 509
V++L A W I F D + G P L
Sbjct: 262 KVISLICV--AVW-LINIGHFNDPV---HGGSWIRGAIYYFKIAVALAVAAIPEGLPAVI 315
Query: 510 PTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDE 567
T + +GT AK+ ++R +E L + KTGTLT + +V + F+ D+
Sbjct: 316 TTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKM--FIIDK 371
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 34/187 (18%)
Query: 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGI-------------GKEYIN 732
D R + +++ + GI+ ++++GD + A + +GI G+E+ +
Sbjct: 602 DPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDD 661
Query: 733 SSLT----------------PQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIAL 776
L P KS+++ LQ+ AM GDG+NDAP+L A++GIA+
Sbjct: 662 LPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAM 721
Query: 777 QIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYN---VVAIPIA 833
+ A TA+ ++L + S +V A++ +A + Q + + ++ N VV I +
Sbjct: 722 G--SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLT 779
Query: 834 AGALLPQ 840
A LP+
Sbjct: 780 AALGLPE 786
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 27/238 (11%)
Query: 347 DIRVGDSVLVLPGETIPVDGRVLAGRSV---VDESMLSGESLPVFKEEGFTVSAGTINWD 403
DI GD V V G+ +P D R+L+ +S VD+S+L+GES+ V K +N D
Sbjct: 145 DIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQD 204
Query: 404 GP--------------LRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVY 449
L I A +TG ++ I KI + + + P+Q+ D G +
Sbjct: 205 KKNMLFSGTNIAAGKALGIVA-TTGVSTEIGKIRDQMAATEQDKTPLQQKLDEF-GEQLS 262
Query: 450 SVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPXXXXXXXXXXXXXXXCPCALGLAT 509
V++L A W I F D + G P L
Sbjct: 263 KVISLICV--AVW-LINIGHFNDPV---HGGSWIRGAIYYFKIAVALAVAAIPEGLPAVI 316
Query: 510 PTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDE 567
T + +GT AK+ ++R +E L + DKTGTLT + +V + F+ D+
Sbjct: 317 TTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKM--FIIDK 372
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 34/187 (18%)
Query: 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGI-------------GKEYIN 732
D R + +++ + GI+ ++++GD + A + +GI G+E+ +
Sbjct: 601 DPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDD 660
Query: 733 SSLT----------------PQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIAL 776
L P KS+++ LQ+ AM GDG+NDAP+L A++GIA+
Sbjct: 661 LPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAM 720
Query: 777 QIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYN---VVAIPIA 833
+ A TA+ ++L + S +V A++ +A + Q + + ++ N VV I +
Sbjct: 721 G--SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLT 778
Query: 834 AGALLPQ 840
A LP+
Sbjct: 779 AALGLPE 785
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 27/238 (11%)
Query: 347 DIRVGDSVLVLPGETIPVDGRVLAGRSV---VDESMLSGESLPVFKEEGFTVSAGTINWD 403
DI GD V V G+ +P D R+L+ +S VD+S+L+GES+ V K +N D
Sbjct: 144 DIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQD 203
Query: 404 GP--------------LRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVY 449
L I A +TG ++ I KI + + + P+Q+ D G +
Sbjct: 204 KKNMLFSGTNIAAGKALGIVA-TTGVSTEIGKIRDQMAATEQDKTPLQQKLDEF-GEQLS 261
Query: 450 SVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPXXXXXXXXXXXXXXXCPCALGLAT 509
V++L A W I F D + G P L
Sbjct: 262 KVISLICV--AVW-LINIGHFNDPV---HGGSWIRGAIYYFKIAVALAVAAIPEGLPAVI 315
Query: 510 PTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDE 567
T + +GT AK+ ++R +E L + DKTGTLT + +V + F+ D+
Sbjct: 316 TTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKM--FIIDK 371
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 34/187 (18%)
Query: 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGI-------------GKEYIN 732
D R + +++ + GI+ ++++GD + A + +GI G+E+ +
Sbjct: 600 DPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVADRAYTGREFDD 659
Query: 733 SSLT----------------PQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIAL 776
L P KS+++ LQ+ AM GDG+NDAP+L A++GIA+
Sbjct: 660 LPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAPALKKAEIGIAM 719
Query: 777 QIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYN---VVAIPIA 833
+ A TA+ ++L + S +V A++ +A + Q + + ++ N VV I +
Sbjct: 720 G--SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLT 777
Query: 834 AGALLPQ 840
A LP+
Sbjct: 778 AALGLPE 784
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 92/236 (38%), Gaps = 25/236 (10%)
Query: 347 DIRVGDSVLVLPGETIPVDGRVLAGRSV---VDESMLSGESLPVFKEEGFTVSAGTINWD 403
DI GD V V G+ +P D R+L +S VD+S+L+GES+ V K +N D
Sbjct: 144 DIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQD 203
Query: 404 -------------GPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYS 450
G +TG + I KI + + + P+Q+ D G +
Sbjct: 204 KKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEF-GEQLSK 262
Query: 451 VMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPXXXXXXXXXXXXXXXCPCALGLATP 510
V++L A W I F D + G P L
Sbjct: 263 VISLICV--AVW-LINIGHFNDPV---HGGSWIRGAIYYFKIAVALAVAAIPEGLPAVIT 316
Query: 511 TAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYD 566
T + +GT AK+ ++R +E L + DKTGTLT + +V + F+ D
Sbjct: 317 TCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKM--FIID 370
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Query: 729 EYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTA 788
E + + +PQQK ++ + Q G VA+ GDG+ND+P+L AD+G+A+ I A +AA A
Sbjct: 697 EMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGI-AGSDAAKNA 755
Query: 789 ASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNV 827
A +ILL + + +V ++ + ++ NL ++AY +
Sbjct: 756 ADMILLDDNFASIVTGVEQGRL----IFDNLKKSIAYTL 790
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 46/236 (19%)
Query: 342 EVPTDDIRVGDSVLVLPGETIPVDGRVL--AGRSVVDESMLSGESLPVFKEEGFTVSA-- 397
++ D + VGD V + G+ +P D R+L GR VD S L+GES P + T +
Sbjct: 189 QINADQLVVGDLVEMKGGDRVPADIRILQAQGRK-VDNSSLTGESEPQTRSPECTHESPL 247
Query: 398 --------GTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAP----IQRLADAIAG 445
T+ +G + +TG ++I +I S+ + + P I+ D IAG
Sbjct: 248 ETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAG 307
Query: 446 PFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPXXXXXXXXXXXXXXXCPCAL 505
+ L ATF F ++ MA P L
Sbjct: 308 -----LAILFGATFFIVAMCIGYTFLRAMVFFMA----------------IVVAYVPEGL 346
Query: 506 GLATPTAILVGTSLGAK----QGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAV 557
LAT T L SL AK + +++ + +E L + DKTGTLT+ + V
Sbjct: 347 -LATVTVCL---SLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTV 398
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 13/119 (10%)
Query: 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVIST 746
L+ A+ V+ L++ GIK ++GD + A ++E+ + + + + + P QKSE +
Sbjct: 22 KLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL--DLVIAEVLPHQKSEEVKK 79
Query: 747 LQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDAL 805
LQ VA VGDGINDAP+LA AD+GIA+ + I+L+ + L VV A+
Sbjct: 80 LQAK-EVVAFVGDGINDAPALAQADLGIAV----------GSGDIVLIRDDLRDVVAAI 127
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 729 EYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTA 788
E + + +PQQK ++ Q G VA+ GDG+ND+P+L AD+G+A+ I + + A
Sbjct: 692 EIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSD-VSKQA 750
Query: 789 ASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVA-IP 831
A +ILL + + +V ++ + ++ NL ++AY + + IP
Sbjct: 751 ADMILLDDNFASIVTGVEEGRL----IFDNLKKSIAYTLTSNIP 790
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 78/209 (37%), Gaps = 10/209 (4%)
Query: 351 GDSVLVLPGETIPVDGRVLAGRSV-VDESMLSGESLPVFKEEGFTVSAGTINWDGPLRIE 409
GD V V G+ IP D R+++ VD S L+GES P + F+ + PL
Sbjct: 193 GDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSS-------ENPLETR 245
Query: 410 ACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQI 469
+ S + + V G + R+A +G V G +
Sbjct: 246 NIAFFSTNCVEGTARGVVVYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAV 305
Query: 470 FPDVLLSDMAGPNGNPXXXXXXXXXXXXXXXCPCALGLATPTAILVGTSLG-AKQGLLIR 528
F V ++ G P L LAT T L T+ A++ L++
Sbjct: 306 FLGVSFFILSLILGYSWLEAVIFLIGIIVANVPEGL-LATVTVCLTLTAKRMARKNCLVK 364
Query: 529 GGDVLERLARIDYLALDKTGTLTEGKPAV 557
+ +E L + DKTGTLT+ + V
Sbjct: 365 NLEAVETLGSTSTICSDKTGTLTQNRMTV 393
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 729 EYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTA 788
E + + +PQQK ++ Q G VA+ GDG+ND+P+ AD+G+A+ I A + + A
Sbjct: 662 EIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGI-AGSDVSKQA 720
Query: 789 ASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVA-IP 831
A +ILL + + +V ++ + ++ NL ++AY + + IP
Sbjct: 721 ADMILLDDNFASIVTGVEEGRL----IFDNLKKSIAYTLTSNIP 760
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 134/325 (41%), Gaps = 46/325 (14%)
Query: 250 LVGFGSIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVLLGRSLEERARIRASSDMNEL 309
L+ G+I+ FL + E + + + V+L V++ ++S M
Sbjct: 78 LLWIGAILCFLAYGIQAATEEEPQNDNLYLG-VVLSAVVIITGCFSYYQEAKSSKIMESF 136
Query: 310 LSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVL 369
++V Q+ LVI + E S + +++ VGD V V G+ IP D R++
Sbjct: 137 KNMVPQQA-LVIRNGEKMS--------------INAEEVVVGDLVEVKGGDRIPADLRII 181
Query: 370 AGRSV-VDESMLSGESLPVFKEEGFT---------VSAGTINW-DGPLRIEACSTGSNSM 418
+ VD S L+GES P + FT ++ + N +G R TG ++
Sbjct: 182 SANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTV 241
Query: 419 ISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDM 478
+ +I ++ +G + PI A F++ ++T A ++I S I L +
Sbjct: 242 MGRIATLASGLEGGQTPIA----AEIEHFIH-IITGVAVFLGVSFFILSLILEYTWLEAV 296
Query: 479 AGPNGNPXXXXXXXXXXXXXXXCPCALGLATPTAILVGTSLG-AKQGLLIRGGDVLERLA 537
G P L LAT T L T+ A++ L++ + +E L
Sbjct: 297 IFLIG------------IIVANVPEGL-LATVTVCLTLTAKRMARKNCLVKNLEAVETLG 343
Query: 538 RIDYLALDKTGTLTEGKPAVFNVAS 562
+ DKTGTLT+ + V ++ S
Sbjct: 344 STSTICSDKTGTLTQNRMTVAHMWS 368
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 729 EYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTA 788
E + + +PQQK ++ Q G VA+ GDG+ND+P+ AD+G+A+ I A + + A
Sbjct: 656 EIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGI-AGSDVSKQA 714
Query: 789 ASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVA-IP 831
A +ILL + + +V ++ + ++ NL ++AY + + IP
Sbjct: 715 ADMILLDDNFASIVTGVEEGRL----IFDNLKKSIAYTLTSNIP 754
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 133/325 (40%), Gaps = 46/325 (14%)
Query: 250 LVGFGSIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVLLGRSLEERARIRASSDMNEL 309
L+ G+I+ FL + E + + + V+L V++ ++S M
Sbjct: 72 LLWIGAILCFLAYGIQAATEEEPQNDNLYLG-VVLSAVVIITGCFSYYQEAKSSKIMESF 130
Query: 310 LSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVL 369
++V Q+ LVI + E S + +++ VGD V V G+ IP D R++
Sbjct: 131 KNMVPQQA-LVIRNGEKMS--------------INAEEVVVGDLVEVKGGDRIPADLRII 175
Query: 370 AGRSV-VDESMLSGESLPVFKEEGFT---------VSAGTINW-DGPLRIEACSTGSNSM 418
+ VD S L+GES P + FT ++ + N +G R TG ++
Sbjct: 176 SANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTV 235
Query: 419 ISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDM 478
+ +I ++ +G + PI A F++ ++T A ++I S I L +
Sbjct: 236 MGRIATLASGLEGGQTPIA----AEIEHFIH-IITGVAVFLGVSFFILSLILEYTWLEAV 290
Query: 479 AGPNGNPXXXXXXXXXXXXXXXCPCALGLATPTAILVGTSLG-AKQGLLIRGGDVLERLA 537
G P L LAT T L T+ A++ L++ + +E L
Sbjct: 291 IFLIG------------IIVANVPEGL-LATVTVCLTLTAKRMARKNCLVKNLEAVETLG 337
Query: 538 RIDYLALDKTGTLTEGKPAVFNVAS 562
+ KTGTLT+ + V ++ S
Sbjct: 338 STSTICSXKTGTLTQNRMTVAHMWS 362
>pdb|2VOY|J Chain J, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 118
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 553 GKPAVFNVASFVYDESEILKIAAAVEKTATHPIAKAIVNKA 593
GKP V ++ DE E+L++AA E+ + HPIA+AIV KA
Sbjct: 1 GKPEVTDLVPLNGDERELLRLAAIAERRSEHPIAEAIVKKA 41
>pdb|3IJ5|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
pdb|3IJ5|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
pdb|3IJ5|C Chain C, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
pdb|3IJ5|D Chain D, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
Length = 211
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 694 HTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHH 753
+ +R L I +++G R + + A +GI Y S E+++TLQ
Sbjct: 83 YGIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQSDKLVAYHELLATLQCQPEQ 142
Query: 754 VAMVGDGINDAPSLALADVGIAL 776
VA +GD + D P +A + +A+
Sbjct: 143 VAYIGDDLIDWPVMAQVGLSVAV 165
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 691 DAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINS------------SLTPQ 738
+A V +L++KG K +L+SG EE V KE +G E++ + L +
Sbjct: 83 EARELVETLREKGFKVVLISGSFEE-VLEPFKE--LGDEFMANRAIFEDGKFQGIRLRFR 139
Query: 739 QKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIE 779
K E + + G +AM GDG DA AD+GIA+ E
Sbjct: 140 DKGEFLKRFR-DGFILAM-GDGYADAKMFERADMGIAVGRE 178
>pdb|2G9O|A Chain A, Solution Structure Of The Apo Form Of The Third Metal-
Binding Domain Of Atp7a Protein (Menkes Disease Protein)
pdb|2GA7|A Chain A, Solution Structure Of The Copper(I) Form Of The Third
Metal- Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
Length = 90
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 71 DSTVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAI 114
DST + GM C CV+ ++S L+A V S+ V++ +A +
Sbjct: 2 DSTATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIV 45
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 700 QQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTP---QQKSEVISTLQTSGHHVAM 756
QQ G + LLL GD + + A+++ Y N + P + +V + L+T+G
Sbjct: 66 QQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQ 125
Query: 757 VGDGINDAPSLALADVG 773
+ D + +P L+ G
Sbjct: 126 LWDQLLHSPDQILSGSG 142
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
pdb|1QNF|A Chain A, Structure Of Photolyase
Length = 484
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 700 QQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTP---QQKSEVISTLQTSGHHVAM 756
QQ G + LLL GD + + A+++ Y N + P + +V + L+T+G
Sbjct: 67 QQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQ 126
Query: 757 VGDGINDAPSLALADVG 773
+ D + +P L+ G
Sbjct: 127 LWDQLLHSPDQILSGSG 143
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 74 VLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAI 114
+ + VSGM C C AR++ L V VN+ TET+ +
Sbjct: 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNV 48
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 74 VLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAI 114
+ + VSGM C C AR++ L V VN+ TET +
Sbjct: 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNV 48
>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
Subtilis
Length = 76
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 74 VLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAI 114
+ + VSGM C C AR++ L V VN+ TET +
Sbjct: 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNV 48
>pdb|4HAM|A Chain A, Crystal Structure Of Transcriptional Antiterminator From
Listeria Monocytogenes Egd-E
Length = 134
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 39/76 (51%)
Query: 693 EHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGH 752
E V+ ++++ +K +L G++ ++ A +G+ ++ + ++ EVI T++ G
Sbjct: 17 EQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGT 76
Query: 753 HVAMVGDGINDAPSLA 768
+A D ++ LA
Sbjct: 77 FIANQTDKLSSPKKLA 92
>pdb|4AP9|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
Length = 201
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 691 DAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVG-----------IGKEYINSSLTPQQ 739
+A V +L++KG K +L+SG EE V KE+G GK + L +
Sbjct: 83 EARELVETLREKGFKVVLISGSFEE-VLEPFKELGDEFXANRAIFEDGK-FQGIRLRFRD 140
Query: 740 KSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIE 779
K E + + + GDG DA AD GIA+ E
Sbjct: 141 KGEFLKRFRDG--FILAXGDGYADAKXFERADXGIAVGRE 178
>pdb|2EW9|A Chain A, Solution Structure Of Apowln5-6
Length = 149
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 71 DSTVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKL 116
D + L ++GM C CV ++S LT + + +V + T A +K
Sbjct: 79 DGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKF 124
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 72 STVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAI 114
ST L+ ++GM C CV ++ +++ + V ++V++ TA +
Sbjct: 122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATV 164
>pdb|3N07|A Chain A, Structure Of Putative 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Phosphatase From Vibrio Cholerae
pdb|3N07|B Chain B, Structure Of Putative 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Phosphatase From Vibrio Cholerae
pdb|3N07|C Chain C, Structure Of Putative 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Phosphatase From Vibrio Cholerae
pdb|3N07|D Chain D, Structure Of Putative 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Phosphatase From Vibrio Cholerae
Length = 195
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 694 HTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHH 753
+ V++L GI+ +++G R + V K +GI Y Q ++ L +
Sbjct: 59 YGVKALXNAGIEIAIITGRRSQIVENRXKALGISLIYQGQDDKVQAYYDICQKLAIAPEQ 118
Query: 754 VAMVGDGINDAP 765
+GD + D P
Sbjct: 119 TGYIGDDLIDWP 130
>pdb|3E81|A Chain A, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E81|B Chain B, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E81|C Chain C, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E81|D Chain D, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E84|A Chain A, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E84|B Chain B, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E84|C Chain C, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E84|D Chain D, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E8M|A Chain A, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E8M|B Chain B, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E8M|C Chain C, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E8M|D Chain D, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
Length = 164
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 700 QQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKS--EVISTLQTSGHHVAMV 757
KGI +L+G++ E V A+++ + +Y+ + + + E+ + L + VA +
Sbjct: 44 HNKGIPVGILTGEKTEIVRRRAEKLKV--DYLFQGVVDKLSAAEELCNELGINLEQVAYI 101
Query: 758 GDGINDAPSLALADVGIA 775
GD +NDA L VGIA
Sbjct: 102 GDDLNDAK--LLKRVGIA 117
>pdb|1YJR|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
pdb|1YJT|A Chain A, Solution Structure Of The Cu(I) Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
Length = 75
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 71 DSTVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIK 115
D + L V GM C CV +++S LT + +V + T A IK
Sbjct: 3 DGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIK 47
>pdb|1YJU|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain Of Menkes Protein
pdb|1YJV|A Chain A, Solution Structure Of The Cu(i) Form Of The Sixth Soluble
Domain Of Menkes Protein
Length = 75
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 71 DSTVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIK 115
D + L V GM C CV +++S LT + +V + T A IK
Sbjct: 3 DGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIK 47
>pdb|3FRY|A Chain A, Crystal Structure Of The Copa C-Terminal Metal Binding
Domain
pdb|3FRY|B Chain B, Crystal Structure Of The Copa C-Terminal Metal Binding
Domain
Length = 73
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 74 VLLDVSGMMCGGCVARVKSVL-TADDRVDSVAVN 106
++L++SG+ C CVARVK L A +V+ V +N
Sbjct: 7 IVLELSGLSCHHCVARVKKALEEAGAKVEKVDLN 40
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 729 EYINSSLTPQQKSEVISTL----QTSGHHVAMVGDGINDAPSLALADVGIALQIEAQ-EN 783
+ + ++ Q K++++ TL H+ VGDG ND +A A +G+A + + E
Sbjct: 235 QVLGEVVSAQTKADILLTLAQQYDVEIHNTVAVGDGANDLVMMAAAGLGVAYHAKPKVEA 294
Query: 784 AASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSW 821
A TA LG + L+ A +A+ Q LSW
Sbjct: 295 KAQTAVRFAGLGGVVCI------LSAALVAQ--QKLSW 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,164,312
Number of Sequences: 62578
Number of extensions: 815251
Number of successful extensions: 2233
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2108
Number of HSP's gapped (non-prelim): 89
length of query: 883
length of database: 14,973,337
effective HSP length: 107
effective length of query: 776
effective length of database: 8,277,491
effective search space: 6423333016
effective search space used: 6423333016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)