Query 002770
Match_columns 883
No_of_seqs 574 out of 3528
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:46:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2217 ZntA Cation transport 100.0 2E-137 4E-142 1205.6 80.0 704 72-871 2-710 (713)
2 KOG0207 Cation transport ATPas 100.0 3E-134 6E-139 1148.8 58.3 748 72-875 146-906 (951)
3 PRK10671 copA copper exporting 100.0 4E-114 8E-119 1060.8 83.8 722 72-870 99-829 (834)
4 PRK11033 zntA zinc/cadmium/mer 100.0 3E-110 6E-115 1006.7 85.2 683 70-871 51-739 (741)
5 TIGR01511 ATPase-IB1_Cu copper 100.0 2.2E-99 5E-104 889.1 65.4 553 233-850 2-562 (562)
6 TIGR01512 ATPase-IB2_Cd heavy 100.0 1.9E-92 4E-97 827.9 62.5 533 247-869 1-535 (536)
7 TIGR01525 ATPase-IB_hvy heavy 100.0 7.6E-92 1.6E-96 827.9 65.8 548 247-868 1-556 (556)
8 TIGR01647 ATPase-IIIA_H plasma 100.0 1.4E-89 3E-94 829.7 62.1 526 280-848 57-628 (755)
9 PRK01122 potassium-transportin 100.0 4.1E-87 9E-92 782.7 65.5 514 281-842 69-600 (679)
10 PRK14010 potassium-transportin 100.0 9.2E-87 2E-91 779.1 62.8 510 284-842 72-596 (673)
11 PRK10517 magnesium-transportin 100.0 7.6E-86 1.6E-90 805.9 60.3 563 280-875 124-755 (902)
12 TIGR01524 ATPase-IIIB_Mg magne 100.0 4.7E-85 1E-89 799.8 62.3 563 280-876 90-721 (867)
13 TIGR01497 kdpB K+-transporting 100.0 5.6E-84 1.2E-88 754.4 63.5 521 276-842 63-601 (675)
14 PRK15122 magnesium-transportin 100.0 4.2E-84 9.1E-89 791.9 61.4 564 279-876 112-756 (903)
15 TIGR01517 ATPase-IIB_Ca plasma 100.0 1E-82 2.2E-87 788.5 61.5 574 276-876 127-789 (941)
16 TIGR01522 ATPase-IIA2_Ca golgi 100.0 4.5E-82 9.8E-87 778.1 61.0 549 289-876 91-738 (884)
17 KOG0202 Ca2+ transporting ATPa 100.0 1.2E-80 2.7E-85 699.7 43.1 568 278-873 78-795 (972)
18 TIGR01106 ATPase-IIC_X-K sodiu 100.0 3.4E-78 7.3E-83 750.0 63.4 562 277-874 103-802 (997)
19 TIGR01523 ATPase-IID_K-Na pota 100.0 7.8E-78 1.7E-82 744.3 62.7 561 280-875 83-870 (1053)
20 COG0474 MgtA Cation transport 100.0 1.4E-79 3.1E-84 753.1 46.7 540 291-872 116-756 (917)
21 TIGR01494 ATPase_P-type ATPase 100.0 1.7E-78 3.8E-83 708.0 52.7 477 285-836 3-484 (499)
22 TIGR01116 ATPase-IIA1_Ca sarco 100.0 4.6E-77 9.9E-82 735.3 62.8 572 276-875 35-749 (917)
23 KOG0204 Calcium transporting A 100.0 5.2E-79 1.1E-83 685.3 34.8 597 253-875 163-858 (1034)
24 TIGR01657 P-ATPase-V P-type AT 100.0 3.1E-74 6.8E-79 719.0 57.9 546 277-874 192-915 (1054)
25 COG2216 KdpB High-affinity K+ 100.0 1.1E-63 2.3E-68 534.7 38.8 547 250-842 37-602 (681)
26 KOG0203 Na+/K+ ATPase, alpha s 100.0 1.2E-65 2.6E-70 577.0 20.7 591 246-876 95-826 (1019)
27 KOG0205 Plasma membrane H+-tra 100.0 5.3E-63 1.2E-67 539.6 29.5 523 284-851 103-681 (942)
28 TIGR01652 ATPase-Plipid phosph 100.0 1.2E-60 2.7E-65 598.7 53.6 558 275-868 51-883 (1057)
29 KOG0208 Cation transport ATPas 100.0 6.3E-60 1.4E-64 538.5 45.3 504 281-831 217-928 (1140)
30 PLN03190 aminophospholipid tra 100.0 3.1E-55 6.8E-60 544.1 56.9 523 276-832 138-950 (1178)
31 KOG0209 P-type ATPase [Inorgan 100.0 4.2E-50 9E-55 448.3 35.9 436 297-777 236-832 (1160)
32 KOG0210 P-type ATPase [Inorgan 100.0 1.2E-45 2.6E-50 405.6 29.5 487 273-817 127-845 (1051)
33 KOG0206 P-type ATPase [General 100.0 1.4E-39 3.1E-44 390.8 29.1 521 276-832 82-873 (1151)
34 PF00122 E1-E2_ATPase: E1-E2 A 100.0 2.4E-34 5.2E-39 302.9 22.6 223 283-535 1-230 (230)
35 PF00702 Hydrolase: haloacid d 100.0 3.6E-28 7.8E-33 252.7 13.5 211 539-771 1-215 (215)
36 COG4087 Soluble P-type ATPase 99.7 6.6E-16 1.4E-20 138.9 12.9 124 678-804 21-145 (152)
37 PF00403 HMA: Heavy-metal-asso 99.2 3.3E-11 7.2E-16 99.0 8.3 62 75-145 1-62 (62)
38 COG2608 CopZ Copper chaperone 99.2 8.5E-11 1.8E-15 98.9 8.5 68 72-148 2-69 (71)
39 TIGR02137 HSK-PSP phosphoserin 99.1 4.6E-10 1E-14 115.3 11.3 116 687-808 68-198 (203)
40 PRK11133 serB phosphoserine ph 99.1 8.1E-10 1.7E-14 121.1 12.7 115 687-806 181-316 (322)
41 COG1778 Low specificity phosph 99.0 2.2E-09 4.7E-14 100.9 11.8 114 694-813 42-163 (170)
42 TIGR01670 YrbI-phosphatas 3-de 99.0 2.1E-09 4.6E-14 105.6 10.9 116 678-805 25-145 (154)
43 PRK10513 sugar phosphate phosp 99.0 5.3E-09 1.1E-13 113.0 14.1 53 752-806 213-265 (270)
44 PRK01158 phosphoglycolate phos 99.0 3.7E-09 8E-14 111.3 12.4 132 668-806 5-226 (230)
45 COG0561 Cof Predicted hydrolas 98.9 5.4E-09 1.2E-13 112.5 12.8 124 682-807 14-259 (264)
46 TIGR01487 SPP-like sucrose-pho 98.9 4.7E-09 1E-13 109.4 10.9 116 687-804 18-214 (215)
47 PRK15126 thiamin pyrimidine py 98.9 5.3E-09 1.2E-13 113.1 11.2 53 752-806 205-259 (272)
48 PRK10976 putative hydrolase; P 98.9 1.1E-08 2.5E-13 110.1 13.4 53 752-806 207-261 (266)
49 TIGR02726 phenyl_P_delta pheny 98.9 6.1E-09 1.3E-13 103.4 10.3 103 694-800 41-145 (169)
50 TIGR00338 serB phosphoserine p 98.9 1.2E-08 2.5E-13 106.7 11.3 113 687-804 85-218 (219)
51 COG0560 SerB Phosphoserine pho 98.9 1E-08 2.2E-13 105.8 10.2 105 686-793 76-199 (212)
52 TIGR01482 SPP-subfamily Sucros 98.8 2.5E-08 5.4E-13 104.5 12.5 118 687-806 15-222 (225)
53 KOG1615 Phosphoserine phosphat 98.8 6.5E-09 1.4E-13 100.8 6.5 91 687-777 88-199 (227)
54 PRK10530 pyridoxal phosphate ( 98.8 5.1E-08 1.1E-12 105.3 13.6 53 752-806 216-268 (272)
55 PF08282 Hydrolase_3: haloacid 98.8 6.2E-08 1.3E-12 102.8 13.9 119 685-805 13-254 (254)
56 PRK09484 3-deoxy-D-manno-octul 98.8 8.6E-08 1.9E-12 97.1 13.4 98 694-797 55-156 (183)
57 PLN02887 hydrolase family prot 98.8 6.3E-08 1.4E-12 113.6 14.1 53 752-806 524-576 (580)
58 PRK13582 thrH phosphoserine ph 98.6 2.4E-07 5.2E-12 95.6 11.1 115 687-806 68-196 (205)
59 TIGR00099 Cof-subfamily Cof su 98.6 2.2E-07 4.7E-12 99.6 10.9 51 752-804 205-255 (256)
60 PLN02954 phosphoserine phospha 98.6 5.7E-07 1.2E-11 94.2 12.6 115 688-804 85-222 (224)
61 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.5 5.8E-07 1.3E-11 92.3 10.8 100 687-790 80-200 (201)
62 PRK03669 mannosyl-3-phosphogly 98.5 2.4E-06 5.1E-11 92.4 14.3 59 665-727 6-64 (271)
63 TIGR01486 HAD-SF-IIB-MPGP mann 98.4 2.8E-06 6E-11 91.1 13.1 54 751-806 194-253 (256)
64 TIGR03333 salvage_mtnX 2-hydro 98.3 3.4E-06 7.4E-11 87.8 11.7 90 686-776 69-181 (214)
65 PRK09552 mtnX 2-hydroxy-3-keto 98.3 2.5E-06 5.4E-11 89.2 10.5 89 687-776 74-185 (219)
66 PF12710 HAD: haloacid dehalog 98.3 1.5E-06 3.4E-11 88.4 8.4 79 690-768 92-192 (192)
67 COG0546 Gph Predicted phosphat 98.2 7.7E-06 1.7E-10 85.5 11.6 120 685-806 87-218 (220)
68 PRK08238 hypothetical protein; 98.2 3E-05 6.6E-10 89.7 16.4 119 687-809 72-199 (479)
69 PRK13222 phosphoglycolate phos 98.2 1E-05 2.3E-10 84.6 10.8 121 686-808 92-224 (226)
70 TIGR01488 HAD-SF-IB Haloacid D 98.2 4.3E-06 9.2E-11 84.0 7.5 81 688-770 74-177 (177)
71 TIGR01454 AHBA_synth_RP 3-amin 98.1 1.2E-05 2.6E-10 83.0 10.7 117 687-805 75-203 (205)
72 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.1 8.6E-06 1.9E-10 83.8 9.5 90 685-776 85-196 (202)
73 TIGR01489 DKMTPPase-SF 2,3-dik 98.1 9.9E-06 2.1E-10 82.1 9.3 89 687-775 72-186 (188)
74 TIGR02471 sucr_syn_bact_C sucr 98.1 1.9E-05 4.2E-10 83.4 11.1 67 739-807 159-233 (236)
75 KOG0207 Cation transport ATPas 98.0 1.1E-05 2.4E-10 95.3 7.5 71 73-152 70-140 (951)
76 PRK13288 pyrophosphatase PpaX; 98.0 4.5E-05 9.8E-10 79.3 11.0 116 688-805 83-210 (214)
77 TIGR01485 SPP_plant-cyano sucr 97.9 7E-05 1.5E-09 79.9 12.1 120 685-806 19-244 (249)
78 PRK13223 phosphoglycolate phos 97.9 8.2E-05 1.8E-09 80.4 11.7 119 686-806 100-230 (272)
79 cd01427 HAD_like Haloacid deha 97.9 4.1E-05 8.8E-10 72.4 8.2 92 684-775 21-138 (139)
80 PRK00192 mannosyl-3-phosphogly 97.8 6.9E-05 1.5E-09 81.1 9.9 108 697-806 142-267 (273)
81 TIGR01449 PGP_bact 2-phosphogl 97.8 6.3E-05 1.4E-09 78.0 9.1 115 687-803 85-211 (213)
82 PRK13225 phosphoglycolate phos 97.7 0.00027 5.8E-09 76.3 11.9 116 687-805 142-267 (273)
83 TIGR01544 HAD-SF-IE haloacid d 97.7 0.00042 9.1E-09 73.9 12.9 119 687-805 121-273 (277)
84 PRK10187 trehalose-6-phosphate 97.7 0.00061 1.3E-08 73.3 13.7 132 666-806 14-241 (266)
85 PLN02382 probable sucrose-phos 97.6 0.00038 8.3E-09 79.5 12.5 118 687-806 28-257 (413)
86 PRK13226 phosphoglycolate phos 97.6 0.00031 6.8E-09 73.9 9.9 117 687-805 95-224 (229)
87 TIGR00003 copper ion binding p 97.5 0.00044 9.6E-09 55.3 8.3 65 73-146 3-67 (68)
88 PRK10671 copA copper exporting 97.5 0.0002 4.3E-09 89.6 7.6 64 72-149 3-66 (834)
89 PRK10826 2-deoxyglucose-6-phos 97.4 0.00039 8.5E-09 72.7 8.6 114 686-802 91-216 (222)
90 PRK12702 mannosyl-3-phosphogly 97.4 0.0014 3.1E-08 69.8 12.6 55 668-726 3-57 (302)
91 PRK06769 hypothetical protein; 97.4 0.00058 1.3E-08 68.5 9.2 109 665-776 3-136 (173)
92 TIGR03351 PhnX-like phosphonat 97.4 0.00074 1.6E-08 70.4 10.2 117 686-804 86-218 (220)
93 TIGR01422 phosphonatase phosph 97.4 0.00071 1.5E-08 72.3 9.9 86 687-772 99-195 (253)
94 PRK11590 hypothetical protein; 97.3 0.0017 3.6E-08 67.5 11.6 90 687-776 95-201 (211)
95 TIGR01545 YfhB_g-proteo haloac 97.3 0.0013 2.8E-08 68.1 10.7 89 687-776 94-200 (210)
96 PRK13478 phosphonoacetaldehyde 97.3 0.0012 2.5E-08 71.3 10.6 86 687-772 101-197 (267)
97 TIGR02461 osmo_MPG_phos mannos 97.3 0.0011 2.5E-08 69.4 10.2 42 685-726 13-54 (225)
98 PLN02770 haloacid dehalogenase 97.3 0.0014 3.1E-08 69.8 10.3 112 687-800 108-230 (248)
99 PLN02957 copper, zinc superoxi 97.2 0.0011 2.3E-08 70.0 8.9 69 71-152 5-73 (238)
100 PLN03243 haloacid dehalogenase 97.2 0.0018 3.9E-08 69.4 10.8 113 687-802 109-231 (260)
101 PTZ00174 phosphomannomutase; P 97.2 0.0024 5.2E-08 68.0 11.6 52 667-722 6-57 (247)
102 TIGR01662 HAD-SF-IIIA HAD-supe 97.2 0.0016 3.4E-08 62.0 8.9 87 686-772 24-125 (132)
103 PRK14502 bifunctional mannosyl 97.2 0.0035 7.6E-08 74.2 13.1 57 666-726 416-472 (694)
104 TIGR01672 AphA HAD superfamily 97.2 0.0011 2.4E-08 69.6 8.1 83 689-772 116-205 (237)
105 PRK06698 bifunctional 5'-methy 97.2 0.002 4.3E-08 75.2 10.9 120 687-808 330-456 (459)
106 COG4359 Uncharacterized conser 97.1 0.0012 2.7E-08 64.1 7.2 90 687-776 73-184 (220)
107 PRK08942 D,D-heptose 1,7-bisph 97.1 0.0041 8.9E-08 62.8 11.5 118 687-806 29-177 (181)
108 TIGR01548 HAD-SF-IA-hyp1 haloa 97.1 0.0011 2.3E-08 68.0 7.2 86 685-770 104-197 (197)
109 PRK11009 aphA acid phosphatase 97.0 0.0023 4.9E-08 67.2 8.8 85 688-776 115-210 (237)
110 PRK11587 putative phosphatase; 97.0 0.0045 9.8E-08 64.5 10.9 108 687-795 83-199 (218)
111 TIGR01484 HAD-SF-IIB HAD-super 97.0 0.0034 7.4E-08 64.6 9.6 40 687-726 17-56 (204)
112 PLN02575 haloacid dehalogenase 97.0 0.0047 1E-07 69.1 11.0 110 688-801 217-337 (381)
113 TIGR02253 CTE7 HAD superfamily 96.9 0.0032 6.9E-08 65.6 9.0 90 687-776 94-194 (221)
114 KOG4656 Copper chaperone for s 96.9 0.0015 3.3E-08 64.2 5.8 69 71-152 6-74 (247)
115 COG4030 Uncharacterized protei 96.9 0.0033 7.1E-08 63.1 8.0 117 687-807 83-263 (315)
116 TIGR01428 HAD_type_II 2-haloal 96.9 0.0034 7.3E-08 64.3 8.5 87 687-773 92-187 (198)
117 TIGR00213 GmhB_yaeD D,D-heptos 96.9 0.0046 1E-07 62.1 9.0 112 688-801 27-174 (176)
118 PHA02530 pseT polynucleotide k 96.9 0.0021 4.6E-08 70.5 7.1 90 684-773 184-291 (300)
119 TIGR01685 MDP-1 magnesium-depe 96.8 0.0054 1.2E-07 61.2 8.9 92 685-776 43-155 (174)
120 PLN02779 haloacid dehalogenase 96.8 0.0039 8.5E-08 67.9 8.5 113 687-801 144-268 (286)
121 PF13419 HAD_2: Haloacid dehal 96.8 0.0024 5.1E-08 63.2 6.3 87 687-773 77-172 (176)
122 TIGR01668 YqeG_hyp_ppase HAD s 96.7 0.0048 1E-07 61.7 8.1 108 664-776 23-135 (170)
123 smart00775 LNS2 LNS2 domain. T 96.7 0.014 2.9E-07 57.6 10.9 89 685-773 25-141 (157)
124 PRK14501 putative bifunctional 96.7 0.011 2.4E-07 73.0 12.4 133 665-806 491-721 (726)
125 PRK14988 GMP/IMP nucleotidase; 96.7 0.0039 8.4E-08 65.3 7.3 90 687-776 93-193 (224)
126 COG2179 Predicted hydrolase of 96.7 0.0065 1.4E-07 58.7 7.9 106 662-772 24-132 (175)
127 TIGR02254 YjjG/YfnB HAD superf 96.7 0.0059 1.3E-07 63.6 8.5 115 687-804 97-223 (224)
128 PRK09449 dUMP phosphatase; Pro 96.6 0.0086 1.9E-07 62.6 9.3 116 687-805 95-222 (224)
129 PLN02940 riboflavin kinase 96.5 0.0066 1.4E-07 68.8 8.2 107 687-793 93-210 (382)
130 TIGR01656 Histidinol-ppas hist 96.5 0.0054 1.2E-07 59.7 6.4 87 687-773 27-140 (147)
131 TIGR01990 bPGM beta-phosphoglu 96.5 0.004 8.7E-08 62.8 5.6 85 687-773 87-180 (185)
132 KOG4383 Uncharacterized conser 96.4 0.018 3.9E-07 66.1 10.6 152 674-827 813-1098(1354)
133 TIGR02009 PGMB-YQAB-SF beta-ph 96.4 0.0056 1.2E-07 61.7 6.1 85 687-773 88-181 (185)
134 KOG1603 Copper chaperone [Inor 96.4 0.0086 1.9E-07 50.7 6.1 56 76-143 8-63 (73)
135 TIGR01509 HAD-SF-IA-v3 haloaci 96.4 0.0093 2E-07 59.9 7.6 85 687-772 85-178 (183)
136 TIGR02463 MPGP_rel mannosyl-3- 96.2 0.018 3.8E-07 60.1 8.9 38 739-776 179-220 (221)
137 PF05116 S6PP: Sucrose-6F-phos 96.2 0.05 1.1E-06 57.9 12.1 66 739-806 165-243 (247)
138 TIGR00685 T6PP trehalose-phosp 96.2 0.028 6E-07 59.7 10.1 61 739-805 167-239 (244)
139 TIGR01549 HAD-SF-IA-v1 haloaci 96.1 0.019 4.1E-07 56.0 8.1 81 689-771 66-154 (154)
140 PLN02811 hydrolase 96.1 0.02 4.3E-07 59.7 8.5 87 687-773 78-179 (220)
141 TIGR01261 hisB_Nterm histidino 96.1 0.014 3E-07 57.7 6.8 88 687-774 29-143 (161)
142 TIGR01533 lipo_e_P4 5'-nucleot 96.0 0.032 7E-07 59.6 9.7 83 686-768 117-205 (266)
143 PF06888 Put_Phosphatase: Puta 95.9 0.034 7.4E-07 58.2 9.1 88 687-774 71-195 (234)
144 smart00577 CPDc catalytic doma 95.9 0.0098 2.1E-07 58.0 4.9 91 685-776 43-140 (148)
145 PRK05446 imidazole glycerol-ph 95.9 0.025 5.5E-07 62.9 8.4 87 687-773 30-143 (354)
146 TIGR01675 plant-AP plant acid 95.9 0.047 1E-06 56.8 9.8 80 686-765 119-210 (229)
147 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.9 0.065 1.4E-06 56.8 11.3 93 680-772 17-116 (242)
148 TIGR02252 DREG-2 REG-2-like, H 95.8 0.019 4.1E-07 59.0 6.7 86 687-773 105-200 (203)
149 TIGR01686 FkbH FkbH-like domai 95.7 0.041 8.9E-07 61.0 9.2 90 687-776 31-128 (320)
150 TIGR01664 DNA-3'-Pase DNA 3'-p 95.6 0.039 8.6E-07 54.8 7.7 87 688-774 43-158 (166)
151 TIGR01681 HAD-SF-IIIC HAD-supe 95.4 0.044 9.6E-07 51.9 6.9 83 687-769 29-126 (128)
152 PLN02580 trehalose-phosphatase 95.2 0.12 2.7E-06 57.9 10.8 67 734-806 293-374 (384)
153 PF09419 PGP_phosphatase: Mito 95.2 0.083 1.8E-06 52.2 8.3 105 662-771 37-157 (168)
154 TIGR01691 enolase-ppase 2,3-di 95.0 0.066 1.4E-06 55.8 7.5 90 685-774 93-192 (220)
155 PLN02919 haloacid dehalogenase 94.8 0.12 2.7E-06 66.1 10.6 112 688-801 162-285 (1057)
156 KOG3120 Predicted haloacid deh 94.6 0.11 2.4E-06 52.6 7.4 90 687-776 84-208 (256)
157 PRK10444 UMP phosphatase; Prov 94.6 0.23 5.1E-06 52.8 10.5 47 680-726 10-59 (248)
158 PRK09456 ?-D-glucose-1-phospha 94.4 0.11 2.5E-06 53.1 7.5 88 687-774 84-181 (199)
159 TIGR01458 HAD-SF-IIA-hyp3 HAD- 94.3 0.31 6.6E-06 52.2 10.6 47 680-726 10-63 (257)
160 TIGR02247 HAD-1A3-hyp Epoxide 94.2 0.054 1.2E-06 56.0 4.5 90 687-776 94-195 (211)
161 PLN02645 phosphoglycolate phos 93.9 0.11 2.5E-06 57.2 6.6 101 667-775 29-135 (311)
162 PLN03017 trehalose-phosphatase 93.9 0.56 1.2E-05 52.3 11.8 57 663-721 108-166 (366)
163 TIGR01993 Pyr-5-nucltdase pyri 93.7 0.23 5.1E-06 50.0 8.0 85 687-774 84-181 (184)
164 PRK10563 6-phosphogluconate ph 93.5 0.15 3.2E-06 53.1 6.4 87 687-776 88-184 (221)
165 COG3769 Predicted hydrolase (H 93.4 0.39 8.4E-06 48.7 8.7 54 668-726 9-62 (274)
166 PF13344 Hydrolase_6: Haloacid 93.4 0.12 2.6E-06 46.8 4.8 87 680-772 7-100 (101)
167 PLN02205 alpha,alpha-trehalose 93.2 0.71 1.5E-05 57.6 12.5 58 665-723 595-653 (854)
168 TIGR01457 HAD-SF-IIA-hyp2 HAD- 93.0 0.83 1.8E-05 48.6 11.3 47 680-726 10-59 (249)
169 PF03767 Acid_phosphat_B: HAD 92.6 0.14 3.1E-06 53.7 4.6 78 689-766 117-207 (229)
170 PRK10725 fructose-1-P/6-phosph 92.6 0.22 4.8E-06 50.2 5.9 81 692-773 92-181 (188)
171 PHA02597 30.2 hypothetical pro 92.5 0.28 6.1E-06 50.0 6.7 87 688-776 75-173 (197)
172 TIGR02052 MerP mercuric transp 91.4 1.1 2.4E-05 38.6 8.3 65 73-146 24-88 (92)
173 TIGR01452 PGP_euk phosphoglyco 91.0 1.9 4.1E-05 46.7 11.3 90 680-775 11-108 (279)
174 TIGR01680 Veg_Stor_Prot vegeta 90.6 1.6 3.4E-05 46.5 9.7 80 686-765 144-236 (275)
175 COG0637 Predicted phosphatase/ 90.5 0.55 1.2E-05 49.0 6.4 88 686-773 85-181 (221)
176 PRK10748 flavin mononucleotide 90.4 0.53 1.2E-05 49.7 6.3 83 687-775 113-205 (238)
177 KOG3040 Predicted sugar phosph 89.9 1.1 2.4E-05 45.0 7.4 49 678-726 14-65 (262)
178 KOG4383 Uncharacterized conser 88.2 11 0.00024 44.3 14.6 39 333-371 159-197 (1354)
179 PLN02151 trehalose-phosphatase 88.2 5.7 0.00012 44.2 12.3 56 664-721 96-153 (354)
180 PRK00192 mannosyl-3-phosphogly 87.6 1.2 2.6E-05 48.1 6.6 57 668-728 6-62 (273)
181 PLN02177 glycerol-3-phosphate 86.9 7.4 0.00016 45.7 13.0 86 688-777 111-214 (497)
182 TIGR02463 MPGP_rel mannosyl-3- 86.7 1.4 3.1E-05 45.6 6.5 40 688-727 17-56 (221)
183 TIGR02251 HIF-SF_euk Dullard-l 86.7 0.57 1.2E-05 46.3 3.2 89 685-774 40-135 (162)
184 PF08235 LNS2: LNS2 (Lipin/Ned 85.3 5 0.00011 39.2 8.8 89 685-773 25-141 (157)
185 COG1011 Predicted hydrolase (H 84.4 2.9 6.4E-05 43.3 7.5 116 687-805 99-226 (229)
186 TIGR01663 PNK-3'Pase polynucle 83.0 3.2 7E-05 48.8 7.7 83 688-770 198-303 (526)
187 PF12689 Acid_PPase: Acid Phos 82.7 6.6 0.00014 39.0 8.6 82 688-769 46-142 (169)
188 TIGR01684 viral_ppase viral ph 81.8 3.2 6.9E-05 44.8 6.4 58 666-727 126-186 (301)
189 TIGR01493 HAD-SF-IA-v2 Haloaci 81.4 1.4 3.1E-05 43.7 3.5 77 687-770 90-175 (175)
190 PRK13748 putative mercuric red 80.8 4.6 0.0001 48.4 8.2 66 75-150 3-68 (561)
191 COG0647 NagD Predicted sugar p 80.4 9.5 0.00021 40.9 9.4 106 680-797 17-130 (269)
192 PLN02423 phosphomannomutase 79.7 2.7 5.9E-05 44.6 5.2 42 734-776 182-230 (245)
193 COG0241 HisB Histidinol phosph 78.5 11 0.00023 37.9 8.5 86 688-773 32-144 (181)
194 cd00371 HMA Heavy-metal-associ 77.3 14 0.00031 26.1 7.4 41 77-117 3-43 (63)
195 TIGR02244 HAD-IG-Ncltidse HAD 76.6 7.3 0.00016 43.3 7.4 37 689-725 186-223 (343)
196 TIGR01689 EcbF-BcbF capsule bi 76.4 8.3 0.00018 36.3 6.7 33 686-718 23-55 (126)
197 PF13242 Hydrolase_like: HAD-h 75.8 4.8 0.0001 33.9 4.6 54 741-794 11-70 (75)
198 PF02358 Trehalose_PPase: Treh 75.2 11 0.00025 39.4 8.3 40 687-726 19-59 (235)
199 COG3700 AphA Acid phosphatase 75.1 7.4 0.00016 38.3 6.0 88 688-776 115-210 (237)
200 PF05822 UMPH-1: Pyrimidine 5' 75.0 11 0.00024 39.6 7.9 118 687-805 90-241 (246)
201 PHA03398 viral phosphatase sup 72.6 10 0.00022 41.1 7.0 57 667-727 129-188 (303)
202 PRK14054 methionine sulfoxide 71.6 7.3 0.00016 38.8 5.3 50 84-142 10-78 (172)
203 TIGR01460 HAD-SF-IIA Haloacid 70.4 20 0.00044 37.6 8.8 87 680-772 7-101 (236)
204 PF06506 PrpR_N: Propionate ca 70.3 16 0.00034 36.6 7.6 126 687-817 17-172 (176)
205 PF13246 Hydrolase_like2: Puta 67.0 9.3 0.0002 33.7 4.5 58 580-637 19-90 (91)
206 PF00389 2-Hacid_dh: D-isomer 67.0 1.1E+02 0.0024 28.6 13.9 98 683-789 2-101 (133)
207 PF01206 TusA: Sulfurtransfera 65.2 15 0.00032 30.5 5.2 54 75-147 2-55 (70)
208 TIGR01459 HAD-SF-IIA-hyp4 HAD- 65.0 5.1 0.00011 42.3 2.9 84 689-773 140-236 (242)
209 PRK05528 methionine sulfoxide 62.3 14 0.00031 36.1 5.1 49 84-141 8-70 (156)
210 TIGR01456 CECR5 HAD-superfamil 62.1 26 0.00056 38.8 8.0 88 680-773 9-106 (321)
211 TIGR01452 PGP_euk phosphoglyco 61.0 15 0.00032 39.8 5.6 86 689-776 145-246 (279)
212 PRK15122 magnesium-transportin 60.8 62 0.0013 41.3 11.9 76 288-374 124-210 (903)
213 PF08645 PNK3P: Polynucleotide 59.5 17 0.00036 35.8 5.2 74 689-763 31-130 (159)
214 COG1877 OtsB Trehalose-6-phosp 58.5 1.3E+02 0.0028 32.3 12.0 65 661-726 13-80 (266)
215 COG2503 Predicted secreted aci 58.3 45 0.00098 34.9 8.1 83 688-770 123-212 (274)
216 PRK13014 methionine sulfoxide 57.3 15 0.00032 37.1 4.4 49 84-141 15-82 (186)
217 PRK00058 methionine sulfoxide 57.1 15 0.00033 37.7 4.6 49 84-141 52-119 (213)
218 COG1171 IlvA Threonine dehydra 55.8 29 0.00062 38.6 6.7 95 667-769 40-138 (347)
219 cd05017 SIS_PGI_PMI_1 The memb 53.6 50 0.0011 30.5 7.2 49 664-726 43-91 (119)
220 TIGR00401 msrA methionine-S-su 52.7 24 0.00051 34.3 4.9 49 84-141 7-74 (149)
221 COG0078 ArgF Ornithine carbamo 52.3 1.2E+02 0.0025 33.1 10.3 92 664-767 69-169 (310)
222 PF01625 PMSR: Peptide methion 49.0 32 0.00069 33.7 5.2 50 84-142 7-75 (155)
223 KOG2882 p-Nitrophenyl phosphat 48.4 63 0.0014 35.0 7.6 48 680-727 31-81 (306)
224 KOG3085 Predicted hydrolase (H 47.6 40 0.00086 35.4 5.9 95 690-787 116-221 (237)
225 PF00875 DNA_photolyase: DNA p 47.3 77 0.0017 31.1 7.8 71 694-766 57-133 (165)
226 COG0225 MsrA Peptide methionin 46.1 32 0.0007 34.0 4.6 50 84-142 13-81 (174)
227 PRK03692 putative UDP-N-acetyl 44.8 92 0.002 33.0 8.2 123 693-821 95-234 (243)
228 PRK14170 bifunctional 5,10-met 44.4 81 0.0018 34.2 7.8 44 750-795 156-207 (284)
229 PRK14194 bifunctional 5,10-met 44.2 1E+02 0.0022 33.7 8.7 45 750-794 158-208 (301)
230 PRK14169 bifunctional 5,10-met 43.2 1.4E+02 0.003 32.4 9.4 44 750-795 155-206 (282)
231 cd03421 SirA_like_N SirA_like_ 41.8 55 0.0012 26.8 4.9 54 76-149 2-55 (67)
232 cd05014 SIS_Kpsf KpsF-like pro 41.7 35 0.00075 31.7 4.2 45 664-720 47-91 (128)
233 PRK14184 bifunctional 5,10-met 41.7 1.3E+02 0.0027 32.8 8.8 58 736-795 140-211 (286)
234 PRK11018 hypothetical protein; 41.6 83 0.0018 26.8 6.0 57 73-148 8-64 (78)
235 PRK14174 bifunctional 5,10-met 40.7 1E+02 0.0022 33.7 7.9 59 735-795 141-213 (295)
236 PRK05550 bifunctional methioni 40.5 43 0.00093 36.1 5.0 49 84-141 134-201 (283)
237 KOG1250 Threonine/serine dehyd 40.2 59 0.0013 36.5 6.0 93 667-767 81-176 (457)
238 cd05008 SIS_GlmS_GlmD_1 SIS (S 40.1 45 0.00098 30.8 4.7 43 665-719 47-89 (126)
239 TIGR02250 FCP1_euk FCP1-like p 40.1 61 0.0013 31.7 5.7 41 687-728 58-98 (156)
240 cd05710 SIS_1 A subgroup of th 38.8 48 0.001 30.7 4.6 45 664-720 47-91 (120)
241 COG1188 Ribosome-associated he 38.7 50 0.0011 29.6 4.2 25 337-362 39-63 (100)
242 PRK14189 bifunctional 5,10-met 38.6 1.1E+02 0.0025 33.1 7.9 55 741-795 143-208 (285)
243 PRK14179 bifunctional 5,10-met 38.2 1.3E+02 0.0029 32.6 8.3 46 750-795 157-208 (284)
244 PRK14172 bifunctional 5,10-met 37.6 2E+02 0.0044 31.0 9.5 60 736-795 141-208 (278)
245 PRK09479 glpX fructose 1,6-bis 37.2 78 0.0017 34.4 6.2 84 684-769 163-283 (319)
246 PLN02645 phosphoglycolate phos 36.4 78 0.0017 34.8 6.5 61 743-805 239-307 (311)
247 PRK14191 bifunctional 5,10-met 36.2 1.2E+02 0.0025 33.0 7.5 58 736-795 140-207 (285)
248 CHL00200 trpA tryptophan synth 35.8 5.8E+02 0.013 27.3 13.9 84 682-768 123-218 (263)
249 KOG2914 Predicted haloacid-hal 35.8 1.5E+02 0.0032 31.0 7.9 106 688-793 93-212 (222)
250 COG0279 GmhA Phosphoheptose is 35.7 64 0.0014 31.8 4.8 49 661-721 106-154 (176)
251 PRK14167 bifunctional 5,10-met 35.7 1.8E+02 0.004 31.7 8.9 58 736-795 140-211 (297)
252 PRK14186 bifunctional 5,10-met 34.6 1.2E+02 0.0026 33.1 7.3 44 750-795 157-208 (297)
253 PHA02669 hypothetical protein; 34.6 86 0.0019 30.4 5.3 49 247-312 1-50 (210)
254 PRK14175 bifunctional 5,10-met 34.5 1.5E+02 0.0032 32.2 8.0 44 750-795 157-208 (286)
255 PRK14010 potassium-transportin 34.4 9.7E+02 0.021 29.5 17.1 88 741-829 447-575 (673)
256 PF15584 Imm44: Immunity prote 34.2 17 0.00037 31.8 0.6 19 350-368 13-31 (94)
257 cd03420 SirA_RHOD_Pry_redox Si 34.1 90 0.002 25.8 5.0 54 76-148 2-55 (69)
258 COG1888 Uncharacterized protei 33.7 2.1E+02 0.0045 25.2 6.9 68 72-148 6-78 (97)
259 PRK14190 bifunctional 5,10-met 33.7 1.4E+02 0.003 32.4 7.5 58 736-795 141-208 (284)
260 cd00860 ThrRS_anticodon ThrRS 33.6 1.2E+02 0.0025 26.0 6.0 47 681-727 6-53 (91)
261 TIGR00739 yajC preprotein tran 33.1 2.5E+02 0.0055 24.4 7.7 19 303-321 28-46 (84)
262 PF12710 HAD: haloacid dehalog 31.8 24 0.00052 35.2 1.4 13 542-554 1-13 (192)
263 PF02681 DUF212: Divergent PAP 31.7 1.2E+02 0.0026 29.1 6.0 42 272-314 63-105 (141)
264 COG1963 Uncharacterized protei 31.6 1.1E+02 0.0024 29.2 5.5 47 238-288 31-85 (153)
265 PRK06450 threonine synthase; V 31.6 1.3E+02 0.0027 33.7 7.2 74 691-767 84-159 (338)
266 PF13380 CoA_binding_2: CoA bi 30.9 56 0.0012 30.2 3.6 39 689-727 65-104 (116)
267 cd04726 KGPDC_HPS 3-Keto-L-gul 30.3 4E+02 0.0087 26.8 10.2 83 691-776 91-185 (202)
268 PRK14185 bifunctional 5,10-met 30.2 2.8E+02 0.006 30.2 9.2 60 736-795 140-211 (293)
269 PRK15424 propionate catabolism 29.9 5.6E+02 0.012 30.6 12.4 70 691-762 95-165 (538)
270 KOG1635 Peptide methionine sul 29.6 1E+02 0.0022 30.4 5.1 51 84-143 31-100 (191)
271 cd02071 MM_CoA_mut_B12_BD meth 29.5 1.1E+02 0.0024 28.4 5.3 64 678-742 53-118 (122)
272 PLN02565 cysteine synthase 29.5 1.7E+02 0.0037 32.3 7.8 90 669-766 32-128 (322)
273 TIGR00640 acid_CoA_mut_C methy 29.5 4E+02 0.0087 25.2 9.2 97 678-776 6-110 (132)
274 TIGR00262 trpA tryptophan synt 29.1 4.7E+02 0.01 27.9 10.7 91 683-776 120-226 (256)
275 TIGR03127 RuMP_HxlB 6-phospho 29.1 80 0.0017 31.4 4.7 33 689-721 85-117 (179)
276 TIGR03679 arCOG00187 arCOG0018 29.0 2.3E+02 0.0049 29.4 8.1 63 690-756 73-140 (218)
277 cd00291 SirA_YedF_YeeD SirA, Y 29.0 1.3E+02 0.0027 24.5 5.1 54 76-148 2-55 (69)
278 PF01380 SIS: SIS domain SIS d 28.7 95 0.0021 28.6 4.9 33 689-721 66-98 (131)
279 PF08777 RRM_3: RNA binding mo 28.6 2.5E+02 0.0053 25.5 7.3 46 75-120 3-48 (105)
280 cd01994 Alpha_ANH_like_IV This 28.1 3E+02 0.0065 27.9 8.7 71 691-763 11-100 (194)
281 PF00763 THF_DHG_CYH: Tetrahyd 27.4 1E+02 0.0022 28.6 4.6 67 685-751 9-86 (117)
282 PLN02423 phosphomannomutase 27.2 1.5E+02 0.0033 31.3 6.6 47 668-719 9-55 (245)
283 cd05006 SIS_GmhA Phosphoheptos 27.2 85 0.0018 31.2 4.4 42 663-716 100-141 (177)
284 PRK13936 phosphoheptose isomer 27.1 1.8E+02 0.004 29.5 7.0 47 663-721 110-156 (197)
285 PTZ00445 p36-lilke protein; Pr 27.1 1.7E+02 0.0037 30.2 6.5 89 688-776 76-204 (219)
286 COG2241 CobL Precorrin-6B meth 27.0 5.6E+02 0.012 26.5 10.3 52 716-767 105-156 (210)
287 PRK00414 gmhA phosphoheptose i 26.9 1E+02 0.0022 31.3 5.0 45 663-719 110-154 (192)
288 PRK13937 phosphoheptose isomer 26.6 91 0.002 31.5 4.6 45 663-719 105-149 (188)
289 COG1585 Membrane protein impli 26.3 2.4E+02 0.0051 27.2 7.0 21 337-357 108-128 (140)
290 PRK14176 bifunctional 5,10-met 26.2 1.9E+02 0.0041 31.4 7.1 58 735-794 146-213 (287)
291 PLN02591 tryptophan synthase 26.1 7.6E+02 0.016 26.2 11.5 93 679-776 108-217 (250)
292 cd05013 SIS_RpiR RpiR-like pro 26.1 1.1E+02 0.0023 28.4 4.8 31 689-719 73-103 (139)
293 TIGR01524 ATPase-IIIB_Mg magne 25.8 3E+02 0.0065 35.0 9.9 91 282-374 96-187 (867)
294 PRK06381 threonine synthase; V 25.5 1.6E+02 0.0035 32.4 6.7 87 669-763 33-121 (319)
295 PF02680 DUF211: Uncharacteriz 25.4 1.2E+02 0.0027 26.8 4.4 68 72-149 5-77 (95)
296 TIGR00696 wecB_tagA_cpsF bacte 25.3 2.6E+02 0.0055 28.1 7.4 119 693-814 38-171 (177)
297 PRK12388 fructose-1,6-bisphosp 25.1 1.8E+02 0.0038 31.8 6.4 84 684-769 160-292 (321)
298 PF05761 5_nucleotid: 5' nucle 25.0 1.3E+02 0.0027 35.0 5.8 36 689-724 185-220 (448)
299 PRK14192 bifunctional 5,10-met 24.8 1.1E+02 0.0025 33.1 5.1 67 684-750 11-89 (283)
300 cd03422 YedF YedF is a bacteri 24.4 1.7E+02 0.0037 24.1 5.0 54 76-148 2-55 (69)
301 cd01516 FBPase_glpX Bacterial 24.4 1.4E+02 0.0031 32.4 5.5 84 684-769 160-280 (309)
302 TIGR03679 arCOG00187 arCOG0018 24.3 4.2E+02 0.0092 27.4 9.1 71 691-763 9-98 (218)
303 PRK13938 phosphoheptose isomer 24.3 1.2E+02 0.0025 31.1 4.8 46 662-719 111-156 (196)
304 TIGR00441 gmhA phosphoheptose 24.0 1E+02 0.0022 30.0 4.2 42 663-716 78-119 (154)
305 COG4996 Predicted phosphatase 23.7 5.4E+02 0.012 24.5 8.4 52 687-738 41-92 (164)
306 PF14336 DUF4392: Domain of un 23.7 1.6E+02 0.0034 32.2 5.9 38 689-726 62-100 (291)
307 TIGR01501 MthylAspMutase methy 23.7 3.7E+02 0.008 25.6 7.7 68 678-749 55-130 (134)
308 cd01994 Alpha_ANH_like_IV This 23.6 3.5E+02 0.0077 27.4 8.2 64 690-757 75-143 (194)
309 COG0731 Fe-S oxidoreductases [ 23.6 4.1E+02 0.0088 29.0 8.9 76 686-765 91-189 (296)
310 PRK08813 threonine dehydratase 23.4 1.8E+02 0.0039 32.6 6.5 72 691-765 67-141 (349)
311 PRK12415 fructose 1,6-bisphosp 23.2 1.5E+02 0.0034 32.3 5.6 84 684-769 161-281 (322)
312 PF01455 HupF_HypC: HupF/HypC 23.2 1.6E+02 0.0034 24.6 4.4 25 337-361 24-51 (68)
313 PF00290 Trp_syntA: Tryptophan 23.0 8.7E+02 0.019 26.0 11.3 94 678-776 116-225 (259)
314 PF04312 DUF460: Protein of un 23.0 5E+02 0.011 24.9 8.2 71 674-748 51-123 (138)
315 cd03423 SirA SirA (also known 23.0 2.1E+02 0.0047 23.5 5.4 54 76-148 2-55 (69)
316 PRK14183 bifunctional 5,10-met 22.8 2.8E+02 0.0061 30.0 7.5 44 750-795 156-207 (281)
317 cd05005 SIS_PHI Hexulose-6-pho 22.8 1.1E+02 0.0023 30.6 4.2 33 689-721 88-120 (179)
318 PF07287 DUF1446: Protein of u 22.7 2.7E+02 0.0059 31.3 7.7 105 688-795 56-167 (362)
319 cd06279 PBP1_LacI_like_3 Ligan 22.7 5.3E+02 0.011 27.2 10.0 71 686-759 16-87 (283)
320 TIGR01415 trpB_rel pyridoxal-p 22.6 2.7E+02 0.0058 32.1 7.9 91 669-764 87-180 (419)
321 COG2177 FtsX Cell division pro 22.5 1E+03 0.022 26.0 20.5 22 84-105 71-92 (297)
322 PRK02261 methylaspartate mutas 22.4 3.7E+02 0.008 25.6 7.6 57 677-735 56-120 (137)
323 PLN03063 alpha,alpha-trehalose 22.2 9.5E+02 0.021 30.3 13.1 61 664-725 505-571 (797)
324 KOG3128 Uncharacterized conser 22.1 3.9E+02 0.0084 28.4 7.9 117 688-804 139-289 (298)
325 PRK04980 hypothetical protein; 21.9 1.7E+02 0.0037 26.5 4.7 53 346-398 30-90 (102)
326 PRK10886 DnaA initiator-associ 21.9 1.4E+02 0.0031 30.4 4.9 44 662-717 107-150 (196)
327 cd04795 SIS SIS domain. SIS (S 21.8 2E+02 0.0044 24.1 5.3 22 689-710 60-81 (87)
328 PF03129 HGTP_anticodon: Antic 21.5 2.1E+02 0.0045 24.8 5.4 48 680-727 3-54 (94)
329 PF03120 DNA_ligase_OB: NAD-de 21.5 47 0.001 28.8 1.1 22 343-364 45-67 (82)
330 PF04273 DUF442: Putative phos 21.3 2E+02 0.0043 26.4 5.2 71 693-766 17-101 (110)
331 PRK00856 pyrB aspartate carbam 21.3 4.1E+02 0.009 29.1 8.7 72 689-762 87-167 (305)
332 PRK07591 threonine synthase; V 21.2 2.5E+02 0.0053 32.4 7.3 88 669-764 107-196 (421)
333 cd00532 MGS-like MGS-like doma 21.0 6.1E+02 0.013 23.0 8.5 62 681-749 3-65 (112)
334 PF13580 SIS_2: SIS domain; PD 21.0 1.5E+02 0.0033 28.1 4.7 38 662-711 101-138 (138)
335 PRK00299 sulfur transfer prote 20.7 3.3E+02 0.0071 23.3 6.2 56 73-147 9-64 (81)
336 COG0425 SirA Predicted redox p 20.7 3.2E+02 0.0069 23.3 6.0 56 73-147 5-61 (78)
337 PRK01045 ispH 4-hydroxy-3-meth 20.7 1.1E+03 0.024 25.7 13.4 211 524-776 37-263 (298)
338 PRK03910 D-cysteine desulfhydr 20.6 2.2E+02 0.0047 31.6 6.5 69 692-760 52-129 (331)
339 TIGR02765 crypto_DASH cryptoch 20.5 3.2E+02 0.0069 31.5 8.1 60 692-753 63-127 (429)
340 PRK14018 trifunctional thiored 20.3 1.3E+02 0.0029 35.5 4.8 49 84-141 205-271 (521)
341 COG0272 Lig NAD-dependent DNA 20.2 1.4E+02 0.003 36.1 5.0 77 343-428 363-441 (667)
342 cd00859 HisRS_anticodon HisRS 20.1 2.4E+02 0.0053 23.5 5.5 47 681-727 6-53 (91)
343 PRK14182 bifunctional 5,10-met 20.0 2.2E+02 0.0047 30.9 6.0 66 684-749 9-85 (282)
No 1
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-137 Score=1205.62 Aligned_cols=704 Identities=42% Similarity=0.612 Sum_probs=628.5
Q ss_pred eEEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCC-HHHHHHHHHhcCCcccccc
Q 002770 72 STVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNV-AESLGKRLMECGFEAKRRV 150 (883)
Q Consensus 72 ~~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~i~~~G~~~~~~~ 150 (883)
.+..+.|+||+|++|+++|| .|++++||.+++||+.++++.+.|++.. .+ .+++.+.+++.||.+....
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~---------~~~~~~~~~~v~~~gy~~~~~~ 71 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEE---------VDLPADIVAAVEKAGYSARLTA 71 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccc---------cccHHHHHHHHHhcCccccccc
Confidence 35789999999999999999 9999999999999999999999999865 34 7899999999999886511
Q ss_pred cCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhhHHHHHHHHHHHh
Q 002770 151 SGTGVAENVKKWKELAKKREDLLVKSRNRVALAWTLVALCCGSHASHILHSLGIHIAHGPLWELLDNSYVKGGFALGALF 230 (883)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 230 (883)
.. .+....+... . ++.++++++++.+..+.+...+..+. .. ...+|+++++++|+++
T Consensus 72 ~~--------~~~~~~~~~~-~-~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~l~~~v~~ 128 (713)
T COG2217 72 AL--------ADPAEAEARL-L-RELLRRLIIAGLLTLPLLLLSLGLLL---------GA----FLLPWVSFLLATPVLF 128 (713)
T ss_pred cc--------cchhhhhhhh-h-hhHHHHHHHHHHHHHHHHHHHHHhhc---------ch----hhHHHHHHHHHHHHHH
Confidence 11 0001110000 1 33456777777776665543211110 01 2235899999999999
Q ss_pred cccHHHH----HHHHcCCCCchHHHHHHHHHHHHHHHHHHHccCCccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 231 GPGRASL----MAFRKGSPNMNSLVGFGSIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVLLGRSLEERARIRASSDM 306 (883)
Q Consensus 231 ~~g~~~~----~~l~~~~~~md~Lv~l~~~~a~~~s~~~~~~~~~~~~~~~f~~~~~ll~~~~~g~~le~~~~~ra~~~~ 306 (883)
++|+||| +++|++++|||+|+++|+++||+||.|.++++ .||++++|+++|+++|+++|.+++.|+++++
T Consensus 129 ~~g~~f~~~a~~~l~~~~~~md~Lv~la~~~A~~~s~~~~~~~------~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai 202 (713)
T COG2217 129 YGGWPFYRGAWRALRRGRLNMDTLVALATIGAYAYSLYATLFP------VYFEEAAMLIFLFLLGRYLEARAKGRARRAI 202 (713)
T ss_pred HHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 78899999999999999999999999988754 7999999999999999999999999999999
Q ss_pred HHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCCCeeeeeEEEEeeceEEeeccccCCCce
Q 002770 307 NELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLSGESLP 386 (883)
Q Consensus 307 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~IPaDg~vl~G~~~Vdes~LTGEs~p 386 (883)
++|+++.|+++++++. ||++++||+++|++||+|+|+|||+||+||+|++|++.||||+|||||.|
T Consensus 203 ~~L~~l~p~~A~~~~~--------------~~~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s~vDeS~iTGEs~P 268 (713)
T COG2217 203 RALLDLAPKTATVVRG--------------DGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSSVDESMLTGESLP 268 (713)
T ss_pred HHHHccCCCEEEEEec--------------CCcEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcEEeecchhhCCCCC
Confidence 9999999999988873 34489999999999999999999999999999999999999999999999
Q ss_pred eeccCCCccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHh
Q 002770 387 VFKEEGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIG 466 (883)
Q Consensus 387 v~K~~g~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~ 466 (883)
+.|.+||.|++||+|.+|.++++|+++|.+|++++|+++++++|.+|+|+|+++||++.+|+|.++++++++|++|++.+
T Consensus 269 V~k~~Gd~V~aGtiN~~G~l~i~vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~ 348 (713)
T COG2217 269 VEKKPGDEVFAGTVNLDGSLTIRVTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFG 348 (713)
T ss_pred EecCCCCEEeeeEEECCccEEEEEEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred cCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecC
Q 002770 467 SQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDK 546 (883)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDK 546 (883)
. .++..++.++++||+++|||||++|+|++++.++++++|+||++|+++++|+++++|+++|||
T Consensus 349 ~----------------~~~~~a~~~a~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDK 412 (713)
T COG2217 349 G----------------GDWETALYRALAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDK 412 (713)
T ss_pred C----------------CcHHHHHHHHHhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeC
Confidence 3 234567899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceEEEEEeccCCChHHHHHHHHHhhhccCChHHHHHHHHHHhcCCCCCCCcCcccccCceEEEEECCEEEEec
Q 002770 547 TGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTATHPIAKAIVNKAESLNLTSPITRGQLAEPGFGILGEVDGRLVAVG 626 (883)
Q Consensus 547 TGTLT~~~~~v~~v~~~~~~~~~~l~~~a~~e~~s~hPi~~Ai~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~g~~~~~G 626 (883)
|||||+|+|+|+++...+.+++++|++++++|+.|+||+++||++++++.+ .+....+++.+|+|+.+.++|+.+.+|
T Consensus 413 TGTLT~G~p~v~~v~~~~~~e~~~L~laAalE~~S~HPiA~AIv~~a~~~~--~~~~~~~~~i~G~Gv~~~v~g~~v~vG 490 (713)
T COG2217 413 TGTLTEGKPEVTDVVALDGDEDELLALAAALEQHSEHPLAKAIVKAAAERG--LPDVEDFEEIPGRGVEAEVDGERVLVG 490 (713)
T ss_pred CCCCcCCceEEEEEecCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHhcC--CCCccceeeeccCcEEEEECCEEEEEc
Confidence 999999999999998764478899999999999999999999999998877 344455899999999999999999999
Q ss_pred CHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEE
Q 002770 627 TLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKT 706 (883)
Q Consensus 627 s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v 706 (883)
+++++.+....... .. .. ......+|+++++++.||. ++|+++++|++|++++++|++||++|+++
T Consensus 491 ~~~~~~~~~~~~~~---~~---~~-------~~~~~~~G~t~v~va~dg~-~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~ 556 (713)
T COG2217 491 NARLLGEEGIDLPL---LS---ER-------IEALESEGKTVVFVAVDGK-LVGVIALADELRPDAKEAIAALKALGIKV 556 (713)
T ss_pred CHHHHhhcCCCccc---hh---hh-------HHHHHhcCCeEEEEEECCE-EEEEEEEeCCCChhHHHHHHHHHHCCCeE
Confidence 99999875432211 00 00 1113457889999999997 99999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHH
Q 002770 707 LLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAAS 786 (883)
Q Consensus 707 ~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~ 786 (883)
+|+|||++.+|+++|+++||+ ++++++.||||.++|+.||++|++|+|||||+||+|||++||||||| +.|+|.++
T Consensus 557 ~mLTGDn~~~A~~iA~~lGId--~v~AellPedK~~~V~~l~~~g~~VamVGDGINDAPALA~AdVGiAm--G~GtDvA~ 632 (713)
T COG2217 557 VMLTGDNRRTAEAIAKELGID--EVRAELLPEDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAM--GSGTDVAI 632 (713)
T ss_pred EEEcCCCHHHHHHHHHHcChH--hheccCCcHHHHHHHHHHHhcCCEEEEEeCCchhHHHHhhcCeeEee--cCCcHHHH
Confidence 999999999999999999996 89999999999999999999999999999999999999999999999 77999999
Q ss_pred hhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccHHHHHHHhhhhhHHHHHhhh
Q 002770 787 TAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVSNSL 866 (883)
Q Consensus 787 ~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~~nsl 866 (883)
++||+++++||+..++++++++|+++++||||+.|+++||+++||+|++++ ++|++|+++|.+||++|++|||
T Consensus 633 eaADvvL~~~dL~~v~~ai~lsr~t~~~IkqNl~~A~~yn~~~iplA~~g~-------l~p~~A~~am~~SSv~VvlNaL 705 (713)
T COG2217 633 EAADVVLMRDDLSAVPEAIDLSRATRRIIKQNLFWAFGYNAIAIPLAAGGL-------LTPWIAALAMSGSSVLVVLNAL 705 (713)
T ss_pred HhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCHHHHHHHHcccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999764 7899999999999999999999
Q ss_pred hcccc
Q 002770 867 LLQFH 871 (883)
Q Consensus 867 ~l~~~ 871 (883)
||+..
T Consensus 706 RL~~~ 710 (713)
T COG2217 706 RLLRS 710 (713)
T ss_pred Hhhcc
Confidence 99863
No 2
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-134 Score=1148.82 Aligned_cols=748 Identities=38% Similarity=0.572 Sum_probs=658.7
Q ss_pred eEEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCccccccc
Q 002770 72 STVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKRRVS 151 (883)
Q Consensus 72 ~~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~~~~ 151 (883)
.++.|.|.||+|.+|+..||+.+.+++||.++++++.++++.|.||+.. +.+.++.+.++..||++.....
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~---------~~pr~i~k~ie~~~~~~~~~~~ 216 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEI---------TGPRDIIKAIEETGFEASVRPY 216 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccc---------cChHHHHHHHHhhcccceeeec
Confidence 6899999999999999999999999999999999999999999999988 8999999999999999887753
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhccchhhhhhhhhHHHHHHHHHHHh
Q 002770 152 GTGVAENVKKWKELAKKREDLLVKSRNRVALAWTLVALCCGSHASHI-LHSLGIHIAHGPLWELLDNSYVKGGFALGALF 230 (883)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 230 (883)
..... ....+..+++++|++.++.+..+.++++......+ +....... ...++.+....+++++|++|++|
T Consensus 217 ~~~~~-------~~~l~~~~ei~~w~~~fl~s~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~vqf 288 (951)
T KOG0207|consen 217 GDTTF-------KNSLKHKEEIRKWKRPFLISLGFSLPVSFAMIICPPLAWILALL-VPFLPGLSYGNSLSFVLATPVQF 288 (951)
T ss_pred cccch-------hhhhhhhhHHHhcchHHHHHHHHHHHHHHHHHHhccchhhhhhh-ccccccchhhhHHHhhhheeeEE
Confidence 31110 10112345677888888888777766665422111 00000000 11222333446889999999999
Q ss_pred cccHHHH----HHHHcCCCCchHHHHHHHHHHHHHHHHHHHccCC-ccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 231 GPGRASL----MAFRKGSPNMNSLVGFGSIVAFLISLVSLLKPEL-EWDASFFEEPVMLLGFVLLGRSLEERARIRASSD 305 (883)
Q Consensus 231 ~~g~~~~----~~l~~~~~~md~Lv~l~~~~a~~~s~~~~~~~~~-~~~~~~f~~~~~ll~~~~~g~~le~~~~~ra~~~ 305 (883)
..|++|| ++|++|+.|||+|++|++.+||+||++..+..-. ..+.+|||++.|++.|+.+|||+|.+++.|++++
T Consensus 289 ~~G~~fy~~A~ksL~~g~~nMdvLv~L~t~aay~~S~~~~~~~~~~~~~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~a 368 (951)
T KOG0207|consen 289 VGGRPFYLAAYKSLKRGSANMDVLVVLGTTAAYFYSIFSLLAAVVFDSPPTFFDTSPMLITFITLGRWLESLAKGKTSEA 368 (951)
T ss_pred ecceeeHHHHHHHHhcCCCCceeehhhHHHHHHHHHHHHHHHHHHccCcchhccccHHHHHHHHHHHHHHHHhhccchHH
Confidence 9999998 9999999999999999999999999887543210 1257899999999999999999999999999999
Q ss_pred HHHHHcccccceEEEEcCCCCCCCCCccccCCCe-EEEeeCCCcCCCCEEEECCCCeeeeeEEEEeeceEEeeccccCCC
Q 002770 306 MNELLSLVSTQSRLVITSSESGSSADNVLCSDAI-CVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLSGES 384 (883)
Q Consensus 306 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~-~~~V~~~~l~~GDiV~v~~Ge~IPaDg~vl~G~~~Vdes~LTGEs 384 (883)
+.+|+++.|.++.++. +|+ +++||.+.|++||+|.|+||++||+||+|++|++.||||++|||+
T Consensus 369 lskLmsl~p~~a~ii~---------------~g~~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss~VDEs~iTGEs 433 (951)
T KOG0207|consen 369 LSKLMSLAPSKATIIE---------------DGSEEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSSEVDESLITGES 433 (951)
T ss_pred HHHHhhcCcccceEee---------------cCCcceEeeeeeeccCCEEEECCCCccccccEEEeCceeechhhccCCc
Confidence 9999999999999887 443 799999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 002770 385 LPVFKEEGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYY 464 (883)
Q Consensus 385 ~pv~K~~g~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~ 464 (883)
+||.|++|+.|.+||+|.+|.+.++++++|.||.+++|+++++++|.+|+|+|+++|+++.||+|.++++++++|++|.+
T Consensus 434 ~PV~Kk~gs~ViaGsiN~nG~l~VkaT~~g~dttla~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~ 513 (951)
T KOG0207|consen 434 MPVPKKKGSTVIAGSINLNGTLLVKATKVGGDTTLAQIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWIL 513 (951)
T ss_pred eecccCCCCeeeeeeecCCceEEEEEEeccccchHHHHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEe
Q 002770 465 IGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLAL 544 (883)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~f 544 (883)
++...+... ..+...+..+|+++++|++++|||+|+||+|+++++|++.+|++|+|+|++++||++.++++++|
T Consensus 514 ~g~~~~~~~------~~~~~~~~~a~~~aisVlviACPCaLgLATPtAvmvatgvgA~nGvLIKGge~LE~~hkv~tVvF 587 (951)
T KOG0207|consen 514 IGKIVFKYP------RSFFDAFSHAFQLAISVLVIACPCALGLATPTAVMVATGVGATNGVLIKGGEALEKAHKVKTVVF 587 (951)
T ss_pred HccccccCc------chhhHHHHHHHHhhheEEEEECchhhhcCCceEEEEEechhhhcceEEcCcHHHHHHhcCCEEEE
Confidence 876432111 11226678889999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCceEEEEEeccC--CChHHHHHHHHHhhhccCChHHHHHHHHHHhcCCC--CCCCcCcccccCce--EEEEE
Q 002770 545 DKTGTLTEGKPAVFNVASFV--YDESEILKIAAAVEKTATHPIAKAIVNKAESLNLT--SPITRGQLAEPGFG--ILGEV 618 (883)
Q Consensus 545 DKTGTLT~~~~~v~~v~~~~--~~~~~~l~~~a~~e~~s~hPi~~Ai~~~~~~~~~~--~~~~~~~~~~~g~g--~~~~~ 618 (883)
|||||||+|+|.|.++.... .+..++|.++++.|+.++||+++||++|+++.+.. ......+.+.||.| +...+
T Consensus 588 DKTGTLT~G~~~V~~~~~~~~~~~~~e~l~~v~a~Es~SeHPig~AIv~yak~~~~~~~~~~~~~~~~~pg~g~~~~~~~ 667 (951)
T KOG0207|consen 588 DKTGTLTEGKPTVVDFKSLSNPISLKEALALVAAMESGSEHPIGKAIVDYAKEKLVEPNPEGVLSFEYFPGEGIYVTVTV 667 (951)
T ss_pred cCCCceecceEEEEEEEecCCcccHHHHHHHHHHHhcCCcCchHHHHHHHHHhcccccCccccceeecccCCCcccceEE
Confidence 99999999999999987653 46889999999999999999999999999988732 22345778889999 66788
Q ss_pred CCEEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHH
Q 002770 619 DGRLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRS 698 (883)
Q Consensus 619 ~g~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~ 698 (883)
++..+.+|+.+|+.+......+ + ....++ ..+..|+++++++.++. +.|++.++|++|+|+..+|+.
T Consensus 668 ~~~~i~iGN~~~~~r~~~~~~~--~---i~~~~~-------~~e~~g~tvv~v~vn~~-l~gv~~l~D~vr~~a~~av~~ 734 (951)
T KOG0207|consen 668 DGNEVLIGNKEWMSRNGCSIPD--D---ILDALT-------ESERKGQTVVYVAVNGQ-LVGVFALEDQVRPDAALAVAE 734 (951)
T ss_pred eeeEEeechHHHHHhcCCCCch--h---HHHhhh-------hHhhcCceEEEEEECCE-EEEEEEeccccchhHHHHHHH
Confidence 9999999999999886544322 1 222222 13567999999999998 999999999999999999999
Q ss_pred HHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeec
Q 002770 699 LQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQI 778 (883)
Q Consensus 699 L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~ 778 (883)
||++|++++|+||||..+|+++|+++||+ .+|+++.|+||.++|+.+|+++..|+|||||+||+|||++|||||+|
T Consensus 735 Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~--~V~aev~P~~K~~~Ik~lq~~~~~VaMVGDGINDaPALA~AdVGIai-- 810 (951)
T KOG0207|consen 735 LKSMGIKVVMLTGDNDAAARSVAQQVGID--NVYAEVLPEQKAEKIKEIQKNGGPVAMVGDGINDAPALAQADVGIAI-- 810 (951)
T ss_pred HHhcCceEEEEcCCCHHHHHHHHHhhCcc--eEEeccCchhhHHHHHHHHhcCCcEEEEeCCCCccHHHHhhccceee--
Confidence 99999999999999999999999999986 89999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccHHHHHHHhhhhh
Q 002770 779 EAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSGGLMALSS 858 (883)
Q Consensus 779 ~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~~~~~~~~g~~l~P~~aa~~m~~ss 858 (883)
+.|++.|.++||+|++.||+.+++.+++++|+++++||+|+.|+++||+++||+|+|+|.| ||+.|+||.|+++|++||
T Consensus 811 g~gs~vAieaADIVLmrn~L~~v~~ai~LSrkt~~rIk~N~~~A~~yn~~~IpIAagvF~P-~~~~L~Pw~A~lama~SS 889 (951)
T KOG0207|consen 811 GAGSDVAIEAADIVLMRNDLRDVPFAIDLSRKTVKRIKLNFVWALIYNLVGIPIAAGVFAP-FGIVLPPWMASLAMAASS 889 (951)
T ss_pred ccccHHHHhhCCEEEEccchhhhHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhheecccC-CccccCchHHHHHHHhhh
Confidence 7789999999999999999999999999999999999999999999999999999999998 458899999999999999
Q ss_pred HHHHHhhhhcccccccc
Q 002770 859 IFVVSNSLLLQFHEFES 875 (883)
Q Consensus 859 l~v~~nsl~l~~~~~~~ 875 (883)
+.|++|||+|+++.+|.
T Consensus 890 vsVv~sSllLk~~k~p~ 906 (951)
T KOG0207|consen 890 VSVVLSSLLLKRYKKPT 906 (951)
T ss_pred HHHhhhHHHHhhccccc
Confidence 99999999998776664
No 3
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=3.7e-114 Score=1060.83 Aligned_cols=722 Identities=35% Similarity=0.544 Sum_probs=621.2
Q ss_pred eEEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCccccccc
Q 002770 72 STVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKRRVS 151 (883)
Q Consensus 72 ~~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~~~~ 151 (883)
.++.+.++||+|++|++.+++.+.+.+||.++++++.+++..+.. . .+.+++.+.+++.||++.+..+
T Consensus 99 ~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~---------~s~~~I~~~I~~~Gy~a~~~~~ 166 (834)
T PRK10671 99 DSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---S---------ASPQDLVQAVEKAGYGAEAIED 166 (834)
T ss_pred ceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---c---------CCHHHHHHHHHhcCCCcccccc
Confidence 357899999999999999999999999999999999999987763 2 2567788888999999765432
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhhHHH-HHHHHHHHh
Q 002770 152 GTGVAENVKKWKELAKKREDLLVKSRNRVALAWTLVALCCGSHASHILHSLGIHIAHGPLWELLDNSYVK-GGFALGALF 230 (883)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~l~~~~~~ 230 (883)
+.. ... ...+..+++.+++++++.++++++++.++.. ++ +.++...+... ..|+. +++++|+++
T Consensus 167 ~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~ 231 (834)
T PRK10671 167 DAK--RRE----RQQETAQATMKRFRWQAIVALAVGIPVMVWG---MI---GDNMMVTADNR---SLWLVIGLITLAVMV 231 (834)
T ss_pred ccc--hhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HH---hhhcccCccch---hHHHHHHHHHHHHHH
Confidence 110 000 0011111222345566777766655444321 11 10000001000 12553 567889999
Q ss_pred cccHHHH----HHHHcCCCCchHHHHHHHHHHHHHHHHHHHccC---CccCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 231 GPGRASL----MAFRKGSPNMNSLVGFGSIVAFLISLVSLLKPE---LEWDASFFEEPVMLLGFVLLGRSLEERARIRAS 303 (883)
Q Consensus 231 ~~g~~~~----~~l~~~~~~md~Lv~l~~~~a~~~s~~~~~~~~---~~~~~~~f~~~~~ll~~~~~g~~le~~~~~ra~ 303 (883)
|+|+||| +++++|++|||+|+++|+++||++|++.++..+ .+..+.||++++|+++|+++|+++|.+++.|++
T Consensus 232 ~~g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~~~ 311 (834)
T PRK10671 232 FAGGHFYRSAWKSLLNGSATMDTLVALGTGAAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHMLEARARQRSS 311 (834)
T ss_pred HhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 888899999999999999999999998765421 011256999999999999999999999999999
Q ss_pred HHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCCCeeeeeEEEEeeceEEeeccccCC
Q 002770 304 SDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLSGE 383 (883)
Q Consensus 304 ~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~IPaDg~vl~G~~~Vdes~LTGE 383 (883)
+.+++|.++.|+++++++ ||.+++||.++|+|||+|+|++||+||+||+|++|++.||||+||||
T Consensus 312 ~~~~~L~~l~p~~a~~~~---------------~~~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~~vdeS~lTGE 376 (834)
T PRK10671 312 KALEKLLDLTPPTARVVT---------------DEGEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGE 376 (834)
T ss_pred HHHHHHhccCCCEEEEEe---------------CCcEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEceEEEeehhhcCC
Confidence 999999999999999988 77789999999999999999999999999999999999999999999
Q ss_pred CceeeccCCCccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 002770 384 SLPVFKEEGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWY 463 (883)
Q Consensus 384 s~pv~K~~g~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~ 463 (883)
|.|+.|++||.||+||+|.+|.++++|+++|.+|.+++|++++++++.+|+|+|+++|+++.+|+|++++++++++++|+
T Consensus 377 s~pv~k~~gd~V~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~~~ 456 (834)
T PRK10671 377 PIPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWY 456 (834)
T ss_pred CCCEecCCCCEEEecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEE
Q 002770 464 YIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLA 543 (883)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~ 543 (883)
+.+.. ..+..++.+++++|+++|||||++++|+++..++++++|+||++|+++++|+++++|++|
T Consensus 457 ~~~~~---------------~~~~~~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~gilvk~~~~le~l~~v~~v~ 521 (834)
T PRK10671 457 FFGPA---------------PQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLV 521 (834)
T ss_pred HhCCc---------------hHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHCCeEEecHHHHHhhcCCCEEE
Confidence 64321 123456788999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccCCceEEEEEecc-CCChHHHHHHHHHhhhccCChHHHHHHHHHHhcCCCCCCCcCcccccCceEEEEECCEE
Q 002770 544 LDKTGTLTEGKPAVFNVASF-VYDESEILKIAAAVEKTATHPIAKAIVNKAESLNLTSPITRGQLAEPGFGILGEVDGRL 622 (883)
Q Consensus 544 fDKTGTLT~~~~~v~~v~~~-~~~~~~~l~~~a~~e~~s~hPi~~Ai~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~g~~ 622 (883)
||||||||+|+|+|.++... +.++++++.+++++|+.++||+++||+++++.. ..+...+++..+|.|+.+.++|+.
T Consensus 522 fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hp~a~Ai~~~~~~~--~~~~~~~~~~~~g~Gv~~~~~g~~ 599 (834)
T PRK10671 522 FDKTGTLTEGKPQVVAVKTFNGVDEAQALRLAAALEQGSSHPLARAILDKAGDM--TLPQVNGFRTLRGLGVSGEAEGHA 599 (834)
T ss_pred EcCCCccccCceEEEEEEccCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHhhC--CCCCcccceEecceEEEEEECCEE
Confidence 99999999999999988754 456788999999999999999999999988643 334556788999999999999999
Q ss_pred EEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHC
Q 002770 623 VAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQK 702 (883)
Q Consensus 623 ~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~ 702 (883)
+.+|+++++.+.... ...+..... ...+.|.+++++++++. ++|++.+.|++|++++++|++|++.
T Consensus 600 ~~~G~~~~~~~~~~~------~~~~~~~~~-------~~~~~g~~~v~va~~~~-~~g~~~l~d~~r~~a~~~i~~L~~~ 665 (834)
T PRK10671 600 LLLGNQALLNEQQVD------TKALEAEIT-------AQASQGATPVLLAVDGK-AAALLAIRDPLRSDSVAALQRLHKA 665 (834)
T ss_pred EEEeCHHHHHHcCCC------hHHHHHHHH-------HHHhCCCeEEEEEECCE-EEEEEEccCcchhhHHHHHHHHHHC
Confidence 999999998653211 111111111 12456889999999987 9999999999999999999999999
Q ss_pred CCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCcc
Q 002770 703 GIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQE 782 (883)
Q Consensus 703 Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~ 782 (883)
|++++|+|||+..++..+++++||+ .+++++.|++|.++++.++.+++.|+|+|||.||++|++.||+||+| ++++
T Consensus 666 gi~v~~~Tgd~~~~a~~ia~~lgi~--~~~~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvgia~--g~g~ 741 (834)
T PRK10671 666 GYRLVMLTGDNPTTANAIAKEAGID--EVIAGVLPDGKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAM--GGGS 741 (834)
T ss_pred CCeEEEEcCCCHHHHHHHHHHcCCC--EEEeCCCHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCeeEEe--cCCC
Confidence 9999999999999999999999997 79999999999999999999999999999999999999999999999 7899
Q ss_pred HHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccHHHHHHHhhhhhHHHH
Q 002770 783 NAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSGGLMALSSIFVV 862 (883)
Q Consensus 783 ~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~ 862 (883)
+.++++||++++++++..|+++++++|+++++|+||+.|+++||+++||+|+|.++|.+|+.++|++|+++|.+||++|+
T Consensus 742 ~~a~~~ad~vl~~~~~~~i~~~i~l~r~~~~~i~~Nl~~a~~yn~~~i~~a~g~~~p~~g~~l~p~~a~~~m~~ss~~vv 821 (834)
T PRK10671 742 DVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSLGIPIAAGILWPFTGTLLNPVVAGAAMALSSITVV 821 (834)
T ss_pred HHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhcccCHHHHHHHhcccceeeh
Confidence 99999999999999999999999999999999999999999999999999999999988877999999999999999999
Q ss_pred Hhhhhccc
Q 002770 863 SNSLLLQF 870 (883)
Q Consensus 863 ~nsl~l~~ 870 (883)
+||+||+.
T Consensus 822 ~nslrl~~ 829 (834)
T PRK10671 822 SNANRLLR 829 (834)
T ss_pred hhhHHhcC
Confidence 99999974
No 4
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=2.7e-110 Score=1006.67 Aligned_cols=683 Identities=31% Similarity=0.443 Sum_probs=588.5
Q ss_pred cceEEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCccccc
Q 002770 70 VDSTVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKRR 149 (883)
Q Consensus 70 ~~~~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~~ 149 (883)
...+..++++||+|++|++.+|+.+.+.+||.++++++.+++..+.|++.. . +++.+.+++.||++...
T Consensus 51 ~~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~----------~-~~I~~aI~~~Gy~a~~~ 119 (741)
T PRK11033 51 SGTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI----------R-AQVESAVQKAGFSLRDE 119 (741)
T ss_pred CCceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc----------h-HHHHHHHHhcccccccc
Confidence 345678999999999999999999999999999999999999999987654 3 67778889999987543
Q ss_pred ccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhhHHHHHHHHHHH
Q 002770 150 VSGTGVAENVKKWKELAKKREDLLVKSRNRVALAWTLVALCCGSHASHILHSLGIHIAHGPLWELLDNSYVKGGFALGAL 229 (883)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 229 (883)
... . + ....+ .. +..++.+. + +.+|+ .++++.... +. + .|+.+++++
T Consensus 120 ~~~-----~-----~-~~~~~--~~-~~~~~~~~--~-~~~~~-------~~~~~~~~~-~~---~--~~~~~~~~~--- 166 (741)
T PRK11033 120 QAA-----A-----A-APESR--LK-SENLPLIT--L-AVMMA-------ISWGLEQFN-HP---F--GQLAFIATT--- 166 (741)
T ss_pred cch-----h-----h-hHHHH--HH-HHHHHHHH--H-HHHHH-------HHHHHhhhh-hH---H--HHHHHHHHH---
Confidence 211 0 0 00000 00 01111111 1 11111 111110000 10 0 244444433
Q ss_pred hcccHHHH----HHHHcCCC-CchHHHHHHHHHHHHHHHHHHHccCCccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 230 FGPGRASL----MAFRKGSP-NMNSLVGFGSIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVLLGRSLEERARIRASS 304 (883)
Q Consensus 230 ~~~g~~~~----~~l~~~~~-~md~Lv~l~~~~a~~~s~~~~~~~~~~~~~~~f~~~~~ll~~~~~g~~le~~~~~ra~~ 304 (883)
++.|+||| +++|++++ |||+|+++|++++++++ .|++++|+++|+++|+++|.+++.|+++
T Consensus 167 ~~~~~~~~~~a~~~l~~~~~~~~~~L~~~a~~~a~~~~--------------~~~~a~~i~~l~~~g~~le~~~~~ra~~ 232 (741)
T PRK11033 167 LVGLYPIARKALRLIRSGSPFAIETLMSVAAIGALFIG--------------ATAEAAMVLLLFLIGERLEGYAASRARR 232 (741)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888 77888885 99999999999998765 1467889999999999999999999999
Q ss_pred HHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCCCeeeeeEEEEeeceEEeeccccCCC
Q 002770 305 DMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLSGES 384 (883)
Q Consensus 305 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~IPaDg~vl~G~~~Vdes~LTGEs 384 (883)
.+++|.++.|.++++++ ||++++||+++|+|||+|+|++||+||+||+|++|++.||||+|||||
T Consensus 233 ~~~~L~~l~p~~a~vir---------------~g~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~~vdes~lTGEs 297 (741)
T PRK11033 233 GVSALMALVPETATRLR---------------DGEREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGES 297 (741)
T ss_pred HHHHHHhCCCCEEEEEE---------------CCEEEEEEHHHCCCCCEEEECCCCEEecceEEEECcEEeecccccCCC
Confidence 99999999999999988 889999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 002770 385 LPVFKEEGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYY 464 (883)
Q Consensus 385 ~pv~K~~g~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~ 464 (883)
.|+.|++||.||+||+|.+|.++++|+++|.+|.++||.+++++++.+++|+|+++|+++.+|+|+++++++++|++|++
T Consensus 298 ~Pv~k~~Gd~V~aGt~~~~G~~~i~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~ 377 (741)
T PRK11033 298 IPVERATGEKVPAGATSVDRLVTLEVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPL 377 (741)
T ss_pred CCEecCCCCeeccCCEEcCceEEEEEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998855
Q ss_pred HhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEe
Q 002770 465 IGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLAL 544 (883)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~f 544 (883)
+.. .++...+.+++++|+++|||+|++++|+++..++.+++|+||++|+++++|+|+++|++||
T Consensus 378 ~~~----------------~~~~~~i~~a~svlviacPcaL~latP~a~~~~l~~aar~gilik~~~alE~l~~v~~v~f 441 (741)
T PRK11033 378 LFA----------------APWQEWIYRGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTTVAF 441 (741)
T ss_pred Hcc----------------CCHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEE
Confidence 421 1234567889999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCceEEEEEecc-CCChHHHHHHHHHhhhccCChHHHHHHHHHHhcCCCCCCCcCcccccCceEEEEECCEEE
Q 002770 545 DKTGTLTEGKPAVFNVASF-VYDESEILKIAAAVEKTATHPIAKAIVNKAESLNLTSPITRGQLAEPGFGILGEVDGRLV 623 (883)
Q Consensus 545 DKTGTLT~~~~~v~~v~~~-~~~~~~~l~~~a~~e~~s~hPi~~Ai~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~g~~~ 623 (883)
|||||||+|+|+|.++... +.++++++.+++++|+.+.||+++||++++++.++..+...+++..+|.|+.+.++|+.+
T Consensus 442 DKTGTLT~g~~~v~~~~~~~~~~~~~~l~~aa~~e~~s~hPia~Ai~~~a~~~~~~~~~~~~~~~~~g~Gv~~~~~g~~~ 521 (741)
T PRK11033 442 DKTGTLTEGKPQVTDIHPATGISESELLALAAAVEQGSTHPLAQAIVREAQVRGLAIPEAESQRALAGSGIEGQVNGERV 521 (741)
T ss_pred eCCCCCcCCceEEEEEEecCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCCCcceEEEeeEEEEEEECCEEE
Confidence 9999999999999998764 456788999999999999999999999999988888777788889999999999999999
Q ss_pred EecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCC
Q 002770 624 AVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKG 703 (883)
Q Consensus 624 ~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~G 703 (883)
.+|+++++.+. . ++ ...... .++.+|.+++++++++. ++|+++|+|++|+|++++|++||++|
T Consensus 522 ~ig~~~~~~~~-----~-~~---~~~~~~-------~~~~~g~~~v~va~~~~-~~g~i~l~d~~r~~a~~~i~~L~~~g 584 (741)
T PRK11033 522 LICAPGKLPPL-----A-DA---FAGQIN-------ELESAGKTVVLVLRNDD-VLGLIALQDTLRADARQAISELKALG 584 (741)
T ss_pred EEecchhhhhc-----c-HH---HHHHHH-------HHHhCCCEEEEEEECCE-EEEEEEEecCCchhHHHHHHHHHHCC
Confidence 99999998641 0 11 111111 13567899999999987 99999999999999999999999999
Q ss_pred CEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCccH
Q 002770 704 IKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQEN 783 (883)
Q Consensus 704 i~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~ 783 (883)
++++|+|||+..++.++|+++||+ +++++.|+||.++|+.||+. +.|+|||||+||+|||+.|||||+| +++++
T Consensus 585 i~~~llTGd~~~~a~~ia~~lgi~---~~~~~~p~~K~~~v~~l~~~-~~v~mvGDgiNDapAl~~A~vgia~--g~~~~ 658 (741)
T PRK11033 585 IKGVMLTGDNPRAAAAIAGELGID---FRAGLLPEDKVKAVTELNQH-APLAMVGDGINDAPAMKAASIGIAM--GSGTD 658 (741)
T ss_pred CEEEEEcCCCHHHHHHHHHHcCCC---eecCCCHHHHHHHHHHHhcC-CCEEEEECCHHhHHHHHhCCeeEEe--cCCCH
Confidence 999999999999999999999995 78899999999999999965 5899999999999999999999999 78999
Q ss_pred HHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccHHHHHHHhhhhhHHHHH
Q 002770 784 AASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVS 863 (883)
Q Consensus 784 ~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~~ 863 (883)
.++++||+++.++++..|+++++++|+++++|+||+.|+++||++++|+|+.++ ++||+|+++|.+||++|++
T Consensus 659 ~a~~~adivl~~~~l~~l~~~i~~sr~~~~~I~~nl~~a~~~n~~~i~~a~~g~-------~~~~~a~~~~~~ss~~v~~ 731 (741)
T PRK11033 659 VALETADAALTHNRLRGLAQMIELSRATHANIRQNITIALGLKAIFLVTTLLGI-------TGLWLAVLADSGATALVTA 731 (741)
T ss_pred HHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHcChHHHHHH
Confidence 999999999999999999999999999999999999999999999999997443 6799999999999999999
Q ss_pred hhhhcccc
Q 002770 864 NSLLLQFH 871 (883)
Q Consensus 864 nsl~l~~~ 871 (883)
||+||.++
T Consensus 732 Nslrl~~~ 739 (741)
T PRK11033 732 NALRLLRK 739 (741)
T ss_pred HHHhhccc
Confidence 99998643
No 5
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=2.2e-99 Score=889.12 Aligned_cols=553 Identities=44% Similarity=0.718 Sum_probs=510.1
Q ss_pred cHHHH----HHHHcCCCCchHHHHHHHHHHHHHHHHHHHccCC---ccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 233 GRASL----MAFRKGSPNMNSLVGFGSIVAFLISLVSLLKPEL---EWDASFFEEPVMLLGFVLLGRSLEERARIRASSD 305 (883)
Q Consensus 233 g~~~~----~~l~~~~~~md~Lv~l~~~~a~~~s~~~~~~~~~---~~~~~~f~~~~~ll~~~~~g~~le~~~~~ra~~~ 305 (883)
|+||| +++++|++|||+|+++|++++|++|++.++.+.. .....||++++|+++++++|+++|.+++.|+++.
T Consensus 2 g~~~~~~a~~~l~~~~~~md~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~a~~~ 81 (562)
T TIGR01511 2 GRPFYKSAWKALRHKAPNMDTLIALGTTVAYGYSLVALLANQVLTGLHVHTFFDASAMLITFILLGRWLEMLAKGRASDA 81 (562)
T ss_pred cHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56776 7888999999999999999999999998875421 1124699999999999999999999999999999
Q ss_pred HHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCCCeeeeeEEEEeeceEEeeccccCCCc
Q 002770 306 MNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLSGESL 385 (883)
Q Consensus 306 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~IPaDg~vl~G~~~Vdes~LTGEs~ 385 (883)
+++|.++.|++++++++ ||.+++||+++|+|||+|+|++||+|||||+|++|++.||||+|||||.
T Consensus 82 ~~~L~~~~p~~a~~~~~--------------~~~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~~vdes~lTGEs~ 147 (562)
T TIGR01511 82 LSKLAKLQPSTATLLTK--------------DGSIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGESEVDESLVTGESL 147 (562)
T ss_pred HHHHHhcCCCEEEEEEC--------------CCeEEEEEHHHCCCCCEEEECCCCEecCceEEEECceEEehHhhcCCCC
Confidence 99999999999998872 5677999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 002770 386 PVFKEEGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYI 465 (883)
Q Consensus 386 pv~K~~g~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~ 465 (883)
|+.|++||.||+||+|.+|.++++|+++|.+|.+++|++++++++.+|+|+|+++|+++.+|++++++++++++++|.+
T Consensus 148 pv~k~~gd~V~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~~~~~- 226 (562)
T TIGR01511 148 PVPKKVGDPVIAGTVNGTGSLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWLF- 226 (562)
T ss_pred cEEcCCCCEEEeeeEECCceEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887741
Q ss_pred hcCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEec
Q 002770 466 GSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALD 545 (883)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fD 545 (883)
.+.+++++|+++|||+|++++|+++..++++++|+||++|+++++|+|+++|++|||
T Consensus 227 -----------------------~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fD 283 (562)
T TIGR01511 227 -----------------------ALEFAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFD 283 (562)
T ss_pred -----------------------HHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEEC
Confidence 367899999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceEEEEEecc-CCChHHHHHHHHHhhhccCChHHHHHHHHHHhcCCCCCCCcCcccccCceEEEEECCEEEE
Q 002770 546 KTGTLTEGKPAVFNVASF-VYDESEILKIAAAVEKTATHPIAKAIVNKAESLNLTSPITRGQLAEPGFGILGEVDGRLVA 624 (883)
Q Consensus 546 KTGTLT~~~~~v~~v~~~-~~~~~~~l~~~a~~e~~s~hPi~~Ai~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~g~~~~ 624 (883)
||||||+|+|+|.++... +.++++++.+++++|+.++||+++||++++++.+.......++++.+|+|+.+.++++.+.
T Consensus 284 KTGTLT~g~~~v~~i~~~~~~~~~~~l~~aa~~e~~s~HPia~Ai~~~~~~~~~~~~~~~~~~~~~g~Gi~~~~~g~~~~ 363 (562)
T TIGR01511 284 KTGTLTQGKPTVTDVHVFGDRDRTELLALAAALEAGSEHPLAKAIVSYAKEKGITLVEVSDFKAIPGIGVEGTVEGTKIQ 363 (562)
T ss_pred CCCCCcCCCEEEEEEecCCCCCHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCcCCCCCeEEECCceEEEEECCEEEE
Confidence 999999999999998754 4567889999999999999999999999998887665556677889999999999999999
Q ss_pred ecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCC
Q 002770 625 VGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGI 704 (883)
Q Consensus 625 ~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi 704 (883)
+|+++++.+.... .. ...++|.++++++.++. ++|.+.++|++||+++++|++||++|+
T Consensus 364 iG~~~~~~~~~~~------~~--------------~~~~~g~~~~~~~~~~~-~~g~~~~~d~l~~~a~e~i~~Lk~~Gi 422 (562)
T TIGR01511 364 LGNEKLLGENAIK------ID--------------GKAEQGSTSVLVAVNGE-LAGVFALEDQLRPEAKEVIQALKRRGI 422 (562)
T ss_pred EECHHHHHhCCCC------CC--------------hhhhCCCEEEEEEECCE-EEEEEEecccccHHHHHHHHHHHHcCC
Confidence 9999998643211 00 11346788999999987 999999999999999999999999999
Q ss_pred EEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHH
Q 002770 705 KTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENA 784 (883)
Q Consensus 705 ~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~ 784 (883)
+++|+|||+...+..+++++||+ +++++.|++|.++++.++++++.|+|||||.||++|++.||+||+| +++++.
T Consensus 423 ~v~ilSgd~~~~a~~ia~~lgi~---~~~~~~p~~K~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~vgia~--g~g~~~ 497 (562)
T TIGR01511 423 EPVMLTGDNRKTAKAVAKELGIN---VRAEVLPDDKAALIKELQEKGRVVAMVGDGINDAPALAQADVGIAI--GAGTDV 497 (562)
T ss_pred eEEEEcCCCHHHHHHHHHHcCCc---EEccCChHHHHHHHHHHHHcCCEEEEEeCCCccHHHHhhCCEEEEe--CCcCHH
Confidence 99999999999999999999995 8899999999999999999999999999999999999999999999 678899
Q ss_pred HHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccHHHH
Q 002770 785 ASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLS 850 (883)
Q Consensus 785 a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~~~~~~~~g~~l~P~~a 850 (883)
+++.||+++.++++..++++++++|+++++|+||+.|+++||++++|+|+++++| +|+.++|++|
T Consensus 498 a~~~Advvl~~~~l~~l~~~i~lsr~~~~~i~qn~~~a~~~n~~~i~la~~~~~~-~g~~~~p~~a 562 (562)
T TIGR01511 498 AIEAADVVLMRNDLNDVATAIDLSRKTLRRIKQNLLWAFGYNVIAIPIAAGVLYP-IGILLSPAVA 562 (562)
T ss_pred HHhhCCEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cccccCCCcC
Confidence 9999999999999999999999999999999999999999999999999999888 5777999864
No 6
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=1.9e-92 Score=827.89 Aligned_cols=533 Identities=38% Similarity=0.545 Sum_probs=493.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHccCCccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCC
Q 002770 247 MNSLVGFGSIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSES 326 (883)
Q Consensus 247 md~Lv~l~~~~a~~~s~~~~~~~~~~~~~~~f~~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~ 326 (883)
||+|++++++++|+++ .||+ +++++++++++++++.++++|+++.+++|.++.|++++++|
T Consensus 1 ~~~l~~~a~~~~~~~~-------------~~~~-~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r----- 61 (536)
T TIGR01512 1 VDLLMALAALGAVAIG-------------EYLE-GALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLR----- 61 (536)
T ss_pred CcHHHHHHHHHHHHHh-------------hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE-----
Confidence 7999999999999776 2555 47888899999999999999999999999999999999988
Q ss_pred CCCCCccccCCCeEEEeeCCCcCCCCEEEECCCCeeeeeEEEEeeceEEeeccccCCCceeeccCCCccccceeeecCcE
Q 002770 327 GSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLSGESLPVFKEEGFTVSAGTINWDGPL 406 (883)
Q Consensus 327 ~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~IPaDg~vl~G~~~Vdes~LTGEs~pv~K~~g~~v~aGt~~~~G~~ 406 (883)
||++++|++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.|++|+.+|+||++.+|.+
T Consensus 62 ----------~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~G~~ 131 (536)
T TIGR01512 62 ----------GGSLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTSTVDESALTGESVPVEKAPGDEVFAGAINLDGVL 131 (536)
T ss_pred ----------CCEEEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcEEEEecccCCCCCcEEeCCCCEEEeeeEECCceE
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchH
Q 002770 407 RIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPL 486 (883)
Q Consensus 407 ~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (883)
+++|+++|.+|.+|+|.+++++++.+++|+|+.+++++.+|++++++++++++++|++... +
T Consensus 132 ~~~V~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~ 193 (536)
T TIGR01512 132 TIVVTKLPADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLKR------------------W 193 (536)
T ss_pred EEEEEEeccccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------c
Confidence 9999999999999999999999999999999999999999999999999888887765321 0
Q ss_pred HHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccCCC
Q 002770 487 LLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYD 566 (883)
Q Consensus 487 ~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~~~ 566 (883)
..++.+++++++++|||+|++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|+|.++.+
T Consensus 194 ~~~~~~~~svlv~~~P~aL~la~~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~---- 269 (536)
T TIGR01512 194 PFWVYRALVLLVVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVP---- 269 (536)
T ss_pred HHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeH----
Confidence 1257789999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred hHHHHHHHHHhhhccCChHHHHHHHHHHhcCCCCCCCcCcccccCceEEEEECCEEEEecCHHHHHHHhhccCCCchhhh
Q 002770 567 ESEILKIAAAVEKTATHPIAKAIVNKAESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQKQGDHSDVQH 646 (883)
Q Consensus 567 ~~~~l~~~a~~e~~s~hPi~~Ai~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~g~~~~~Gs~~~i~~~~~~~~~~~~~~~ 646 (883)
.+++.+++++|+.+.||+++||++++++.+ ...+..+.+|+|+.+.++|..+.+|+++++.+....
T Consensus 270 -~~~l~~a~~~e~~~~hp~~~Ai~~~~~~~~----~~~~~~~~~g~gi~~~~~g~~~~ig~~~~~~~~~~~--------- 335 (536)
T TIGR01512 270 -AEVLRLAAAAEQASSHPLARAIVDYARKRE----NVESVEEVPGEGVRAVVDGGEVRIGNPRSLEAAVGA--------- 335 (536)
T ss_pred -HHHHHHHHHHhccCCCcHHHHHHHHHHhcC----CCcceEEecCCeEEEEECCeEEEEcCHHHHhhcCCc---------
Confidence 378999999999999999999999998765 334567889999999999999999999887543210
Q ss_pred HHHHHhhhcccccCcCCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCC-EEEEEcCCcHHHHHHHHHHcC
Q 002770 647 LEHAVTHQSSELASPSNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGI-KTLLLSGDREEAVAATAKEVG 725 (883)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi-~v~~lTGd~~~~a~~ia~~~g 725 (883)
.....+.+.+++++|+. ++|.+.++|++|++++++|++|+++|+ +++|+|||+..++..+++++|
T Consensus 336 -------------~~~~~~~~~~~v~~~~~-~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lg 401 (536)
T TIGR01512 336 -------------RPESAGKTIVHVARDGT-YLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELG 401 (536)
T ss_pred -------------chhhCCCeEEEEEECCE-EEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcC
Confidence 12345678889999887 999999999999999999999999999 999999999999999999999
Q ss_pred CCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeecC-CccHHHHhhcCEEEeCCChhhHHHH
Q 002770 726 IGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIE-AQENAASTAASIILLGNKLSQVVDA 804 (883)
Q Consensus 726 i~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~-~~~~~a~~~ad~vl~~~~~~~l~~~ 804 (883)
++ .+++++.|++|.++++.++++++.|+|+|||.||++|++.||+||++ + ++++.+++.||+++.++++..+.++
T Consensus 402 i~--~~f~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~--g~~~~~~~~~~ad~vl~~~~l~~l~~~ 477 (536)
T TIGR01512 402 ID--EVHAELLPEDKLEIVKELREKYGPVAMVGDGINDAPALAAADVGIAM--GASGSDVAIETADVVLLNDDLSRLPQA 477 (536)
T ss_pred Ch--hhhhccCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHhCCEEEEe--CCCccHHHHHhCCEEEECCCHHHHHHH
Confidence 97 78999999999999999999999999999999999999999999999 5 6889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccHHHHHHHhhhhhHHHHHhhhhcc
Q 002770 805 LDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQ 869 (883)
Q Consensus 805 i~~~r~~~~~i~~n~~~a~~~n~~~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~~nsl~l~ 869 (883)
+++||+++++|+||+.|++.||++++|+|+.++ ++|++|+++|.+||++|++||+|++
T Consensus 478 i~~~r~~~~~i~~nl~~a~~~n~~~i~~a~~G~-------~~p~~aa~~m~~ss~~v~~ns~r~~ 535 (536)
T TIGR01512 478 IRLARRTRRIVKQNVVIALGIILLLILLALFGV-------LPLWLAVLGHEGSTVLVILNALRLL 535 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHcChHHHHHHHHHhhc
Confidence 999999999999999999999999999998543 7999999999999999999999986
No 7
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=7.6e-92 Score=827.94 Aligned_cols=548 Identities=45% Similarity=0.694 Sum_probs=500.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHccCCccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCC
Q 002770 247 MNSLVGFGSIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSES 326 (883)
Q Consensus 247 md~Lv~l~~~~a~~~s~~~~~~~~~~~~~~~f~~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~ 326 (883)
||+|++++++.+|++|.| .+++++++++++++++|.++++|+++.+++|.++.|++++++|
T Consensus 1 ~d~l~~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r----- 61 (556)
T TIGR01525 1 MDLLMALATIAAYAMGLV--------------LEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQ----- 61 (556)
T ss_pred CcHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE-----
Confidence 899999999999998843 4678999999999999999999999999999999999999988
Q ss_pred CCCCCccccCC-CeEEEeeCCCcCCCCEEEECCCCeeeeeEEEEeeceEEeeccccCCCceeeccCCCccccceeeecCc
Q 002770 327 GSSADNVLCSD-AICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLSGESLPVFKEEGFTVSAGTINWDGP 405 (883)
Q Consensus 327 ~~~~~~~~~~d-g~~~~V~~~~l~~GDiV~v~~Ge~IPaDg~vl~G~~~Vdes~LTGEs~pv~K~~g~~v~aGt~~~~G~ 405 (883)
| |++++|+.++|+|||+|.+++||+|||||+|++|++.||||+|||||.|+.|++|+.||+||.+.+|.
T Consensus 62 ----------~~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~g~ 131 (556)
T TIGR01525 62 ----------GDGSEEEVPVEELQVGDIVIVRPGERIPVDGVVISGESEVDESALTGESMPVEKKEGDEVFAGTINGDGS 131 (556)
T ss_pred ----------CCCeEEEEEHHHCCCCCEEEECCCCEeccceEEEecceEEeehhccCCCCCEecCCcCEEeeceEECCce
Confidence 6 48999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCch
Q 002770 406 LRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNP 485 (883)
Q Consensus 406 ~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (883)
++++|+++|.+|+++++.+++++++.+++|+|+.+++++.+|++++++++++++++|++.+..
T Consensus 132 ~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~~~----------------- 194 (556)
T TIGR01525 132 LTIRVTKLGEDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGAL----------------- 194 (556)
T ss_pred EEEEEEEecccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------
Confidence 999999999999999999999999999999999999999999999999999999988764321
Q ss_pred HHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccC-
Q 002770 486 LLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFV- 564 (883)
Q Consensus 486 ~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~- 564 (883)
..+.+++++++++|||+|++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|+|.++...+
T Consensus 195 --~~~~~~~~vlv~~~P~al~l~~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~ 272 (556)
T TIGR01525 195 --GALYRALAVLVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDD 272 (556)
T ss_pred --hHHHHHHHHHhhccccchhehhHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred CC--hHHHHHHHHHhhhccCChHHHHHHHHHHhcCCCCCCCc-CcccccCceEEEEECC-EEEEecCHHHHHHHhhccCC
Q 002770 565 YD--ESEILKIAAAVEKTATHPIAKAIVNKAESLNLTSPITR-GQLAEPGFGILGEVDG-RLVAVGTLEWVYERFQKQGD 640 (883)
Q Consensus 565 ~~--~~~~l~~~a~~e~~s~hPi~~Ai~~~~~~~~~~~~~~~-~~~~~~g~g~~~~~~g-~~~~~Gs~~~i~~~~~~~~~ 640 (883)
.. +++++.+++++|+.+.||+++||++++++.+.+.+. . +..+.+|+|+.+.++| ..+.+|+++++... ..
T Consensus 273 ~~~~~~~~l~~a~~~e~~~~hp~~~Ai~~~~~~~~~~~~~-~~~~~~~~~~gi~~~~~g~~~~~lg~~~~~~~~--~~-- 347 (556)
T TIGR01525 273 ASISEEELLALAAALEQSSSHPLARAIVRYAKKRGLELPK-QEDVEEVPGKGVEATVDGQEEVRIGNPRLLELA--AE-- 347 (556)
T ss_pred CCccHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCccc-ccCeeEecCCeEEEEECCeeEEEEecHHHHhhc--CC--
Confidence 33 678899999999999999999999999987765433 3 5667889999999999 79999999987211 11
Q ss_pred CchhhhHHHHHhhhcccccCcCCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCC-CEEEEEcCCcHHHHHH
Q 002770 641 HSDVQHLEHAVTHQSSELASPSNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKG-IKTLLLSGDREEAVAA 719 (883)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~G-i~v~~lTGd~~~~a~~ 719 (883)
+........ ....+.|.+++++++++. ++|.+.++|+++|+++++|++|+++| ++++|+|||+...+..
T Consensus 348 --~~~~~~~~~-------~~~~~~g~~~~~v~~~~~-~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~ 417 (556)
T TIGR01525 348 --PISASPDLL-------NEGESQGKTVVFVAVDGE-LLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEA 417 (556)
T ss_pred --CchhhHHHH-------HHHhhCCcEEEEEEECCE-EEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHH
Confidence 111111111 123457889999999987 99999999999999999999999999 9999999999999999
Q ss_pred HHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChh
Q 002770 720 TAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLS 799 (883)
Q Consensus 720 ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~ 799 (883)
+++++|++ .+|+++.|++|.++++.+++.++.|+|+|||.||++|++.||+||++ +++++.+++.||+++.++++.
T Consensus 418 i~~~lgi~--~~f~~~~p~~K~~~v~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~--g~~~~~~~~~Ad~vi~~~~~~ 493 (556)
T TIGR01525 418 VAAELGID--EVHAELLPEDKLAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAM--GAGSDVAIEAADIVLLNDDLS 493 (556)
T ss_pred HHHHhCCC--eeeccCCHHHHHHHHHHHHHcCCEEEEEECChhHHHHHhhCCEeEEe--CCCCHHHHHhCCEEEeCCCHH
Confidence 99999996 79999999999999999999999999999999999999999999999 678899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccHH-HHHHHhhhhhHHHHHhhhhc
Q 002770 800 QVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPS-LSGGLMALSSIFVVSNSLLL 868 (883)
Q Consensus 800 ~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~~~~~~~~g~~l~P~-~aa~~m~~ssl~v~~nsl~l 868 (883)
.+++++++||+++++|+||+.|+++||++++|+|++++ ++|+ +|+++|.+||++|++||+|+
T Consensus 494 ~l~~~i~~~r~~~~~i~~nl~~a~~~N~~~i~~a~~g~-------~~p~~~aa~~m~~ss~~v~lns~r~ 556 (556)
T TIGR01525 494 SLPTAIDLSRKTRRIIKQNLAWALGYNLVAIPLAAGGL-------LPLWLLAVLLHEGSTVLVVLNSLRL 556 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHhchHHHHHHHhhcC
Confidence 99999999999999999999999999999999998765 6896 99999999999999999986
No 8
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=1.4e-89 Score=829.73 Aligned_cols=526 Identities=25% Similarity=0.371 Sum_probs=450.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCC
Q 002770 280 EPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPG 359 (883)
Q Consensus 280 ~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~G 359 (883)
++++++++++++..++.+++.|+.+.+++|.++.|++++|+| ||++++|+++||+|||+|.|++|
T Consensus 57 ~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~R---------------dg~~~~I~~~~Lv~GDiV~l~~G 121 (755)
T TIGR01647 57 DFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVLR---------------DGKWQEIPASELVPGDVVRLKIG 121 (755)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE---------------CCEEEEEEhhhCcCCCEEEECCC
Confidence 355566677788889999999999999999999999999988 89999999999999999999999
Q ss_pred CeeeeeEEEEeec-eEEeeccccCCCceeeccCCCccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCChhHH
Q 002770 360 ETIPVDGRVLAGR-SVVDESMLSGESLPVFKEEGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQR 438 (883)
Q Consensus 360 e~IPaDg~vl~G~-~~Vdes~LTGEs~pv~K~~g~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~ 438 (883)
|+|||||+|++|+ +.||||+|||||.|+.|.+|+.+|+||.+.+|.++++|++||.+|.+|+|.+++++++.+++|+|+
T Consensus 122 d~IPaDg~vi~g~~~~VDeS~LTGES~PV~K~~~~~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~ 201 (755)
T TIGR01647 122 DIVPADCRLFEGDYIQVDQAALTGESLPVTKKTGDIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQK 201 (755)
T ss_pred CEEeceEEEEecCceEEEcccccCCccceEeccCCeeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHH
Confidence 9999999999998 899999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHHHHH
Q 002770 439 LADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTS 518 (883)
Q Consensus 439 ~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~ 518 (883)
.+++++.++++++++++++.+++|++... .++..++.+++++++++|||+|++++|++++.+..
T Consensus 202 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~----------------~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~ 265 (755)
T TIGR01647 202 ILSKIGLFLIVLIGVLVLIELVVLFFGRG----------------ESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAA 265 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------------CCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHH
Confidence 99999999999999888888887765221 22455688899999999999999999999999999
Q ss_pred HHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccC--CChHHHHHHHHHh-hhccCChHHHHHHHHHHh
Q 002770 519 LGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFV--YDESEILKIAAAV-EKTATHPIAKAIVNKAES 595 (883)
Q Consensus 519 ~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~--~~~~~~l~~~a~~-e~~s~hPi~~Ai~~~~~~ 595 (883)
+++|+|+++|+++++|+||++|++|||||||||+|+|+|.+++..+ +++++++.+++.. +..+.||+++|+++++++
T Consensus 266 r~ak~gilvk~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~l~~a~~~~~~~~~~pi~~Ai~~~~~~ 345 (755)
T TIGR01647 266 ELAKKKAIVTRLTAIEELAGMDILCSDKTGTLTLNKLSIDEILPFFNGFDKDDVLLYAALASREEDQDAIDTAVLGSAKD 345 (755)
T ss_pred HHHhCCeEEcccHHHHhccCCcEEEecCCCccccCceEEEEEEecCCCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997653 5677888887755 467889999999998875
Q ss_pred cCC---CCCCCcCccc-ccCceEEEEE----CCE--EEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCC
Q 002770 596 LNL---TSPITRGQLA-EPGFGILGEV----DGR--LVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYS 665 (883)
Q Consensus 596 ~~~---~~~~~~~~~~-~~g~g~~~~~----~g~--~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 665 (883)
.+. ..+....... ..++++...+ +|+ .+.||+++.+.++|..... ...++.+.. ..+..+|
T Consensus 346 ~~~~~~~~~~~~~~pf~~~~k~~~~~v~~~~~g~~~~~~kGa~e~il~~c~~~~~--~~~~~~~~~-------~~~~~~G 416 (755)
T TIGR01647 346 LKEARDGYKVLEFVPFDPVDKRTEATVEDPETGKRFKVTKGAPQVILDLCDNKKE--IEEKVEEKV-------DELASRG 416 (755)
T ss_pred hHHHHhcCceEEEeccCCCCCeEEEEEEeCCCceEEEEEeCChHHHHHhcCCcHH--HHHHHHHHH-------HHHHhCC
Confidence 431 0111111111 2466776666 244 3679999999999864211 111111111 2235679
Q ss_pred CeEEEEEec----CceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc------------
Q 002770 666 KSVVYVGRE----GEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE------------ 729 (883)
Q Consensus 666 ~~~~~~a~~----~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~------------ 729 (883)
.+++++++. +.+++|+++|+|++|++++++|++||++|++++|+|||++.+|.++|+++||...
T Consensus 417 ~rvl~vA~~~~e~~l~~~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~~~~~~l~~~~~ 496 (755)
T TIGR01647 417 YRALGVARTDEEGRWHFLGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTNIYTADVLLKGDN 496 (755)
T ss_pred CEEEEEEEEcCCCCcEEEEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCcCHHHhcCCcc
Confidence 999999982 3369999999999999999999999999999999999999999999999999641
Q ss_pred ----------------eEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEE
Q 002770 730 ----------------YINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIIL 793 (883)
Q Consensus 730 ----------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl 793 (883)
.+|++++|+||.++|+.||++|+.|+|+|||+||+|||++||||||| ++|+|.++++||+|+
T Consensus 497 ~~~~~~~~~~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm--~~gtdvAkeaADivL 574 (755)
T TIGR01647 497 RDDLPSGELGEMVEDADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAV--AGATDAARSAADIVL 574 (755)
T ss_pred hhhCCHHHHHHHHHhCCEEEecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEe--cCCcHHHHHhCCEEE
Confidence 28999999999999999999999999999999999999999999999 689999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccHH
Q 002770 794 LGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPS 848 (883)
Q Consensus 794 ~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~~~~~~~~g~~l~P~ 848 (883)
++|++..+++++++||++++||+||+.|.++.|+..+.......+ .+++.|+|+
T Consensus 575 l~d~l~~I~~ai~~gR~~~~ni~k~i~~~~~~n~~~~~~~~~~~l-~~~~~l~~~ 628 (755)
T TIGR01647 575 TEPGLSVIVDAILESRKIFQRMKSYVIYRIAETIRIVFFFGLLIL-ILNFYFPPI 628 (755)
T ss_pred EcCChHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhCcchhHH
Confidence 999999999999999999999999999999999865543322211 134446775
No 9
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=4.1e-87 Score=782.68 Aligned_cols=514 Identities=27% Similarity=0.382 Sum_probs=431.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-ceEEEEcCCCCCCCCCccccCCCe-EEEeeCCCcCCCCEEEECC
Q 002770 281 PVMLLGFVLLGRSLEERARIRASSDMNELLSLVST-QSRLVITSSESGSSADNVLCSDAI-CVEVPTDDIRVGDSVLVLP 358 (883)
Q Consensus 281 ~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~-~~~v~~~~~~~~~~~~~~~~~dg~-~~~V~~~~l~~GDiV~v~~ 358 (883)
...+++.+++++++|.+++.|+++.+++|+++.|+ +++++| ||. +++||+++|++||+|+|++
T Consensus 69 ~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vir---------------~g~~~~~V~~~eL~~GDiV~v~~ 133 (679)
T PRK01122 69 TLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKLR---------------EPGAAEEVPATELRKGDIVLVEA 133 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEE---------------CCCEEEEEEHHHcCCCCEEEEcC
Confidence 34556667889999999999999999999999986 688887 555 8999999999999999999
Q ss_pred CCeeeeeEEEEeeceEEeeccccCCCceeeccCCCc---cccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCCh
Q 002770 359 GETIPVDGRVLAGRSVVDESMLSGESLPVFKEEGFT---VSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAP 435 (883)
Q Consensus 359 Ge~IPaDg~vl~G~~~Vdes~LTGEs~pv~K~~g~~---v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~ 435 (883)
||+||+||+|++|++.||||+|||||.|+.|++|+. ||+||.|.+|.++++|+++|.+|.++||++++++++.+|+|
T Consensus 134 Gd~IPaDG~vieG~a~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~lgki~~lve~a~~~ktp 213 (679)
T PRK01122 134 GEIIPADGEVIEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFLDRMIALVEGAKRQKTP 213 (679)
T ss_pred CCEEEEEEEEEEccEEEEcccccCCCCceEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHHHHHHHHHHhccccCCH
Confidence 999999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred hHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHH
Q 002770 436 IQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILV 515 (883)
Q Consensus 436 ~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~ 515 (883)
+|...+.+..+++.+++++....+.++++.+ .. .++..++++++++|||+++.++|.....
T Consensus 214 ~e~al~~l~~~l~~i~l~~~~~~~~~~~~~g-----------------~~--~~l~~~iallV~aiP~alg~l~~~i~i~ 274 (679)
T PRK01122 214 NEIALTILLAGLTIIFLLVVATLPPFAAYSG-----------------GA--LSITVLVALLVCLIPTTIGGLLSAIGIA 274 (679)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-----------------ch--HHHHHHHHHHHHcccchhhhHHHHHHHH
Confidence 9988777766655433333222222211111 11 2577889999999999999999999999
Q ss_pred HHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEecc-CCChHHHHHHHHHhhhccCChHHHHHHHHHH
Q 002770 516 GTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASF-VYDESEILKIAAAVEKTATHPIAKAIVNKAE 594 (883)
Q Consensus 516 ~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~-~~~~~~~l~~~a~~e~~s~hPi~~Ai~~~~~ 594 (883)
++.+++|+|+++|+++++|++|++|++|||||||||+|+|.+.++++. +.++++++..++..+..+.||.++||+++++
T Consensus 275 g~~r~ak~gvLvk~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~a~~~s~~s~hP~~~AIv~~a~ 354 (679)
T PRK01122 275 GMDRVLQANVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFLPVPGVTEEELADAAQLSSLADETPEGRSIVVLAK 354 (679)
T ss_pred HHHHHhcCCeeecCchHHHHhcCCCEEEEeCCCCCcCCcEEEEEEEeCCCCCHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998753 5667788999999999999999999999987
Q ss_pred h-cCCCCCC-----CcCcccccCceEEEE-ECCEEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCe
Q 002770 595 S-LNLTSPI-----TRGQLAEPGFGILGE-VDGRLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKS 667 (883)
Q Consensus 595 ~-~~~~~~~-----~~~~~~~~g~g~~~~-~~g~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 667 (883)
+ .+..... .........++.++. ++|+.+.||+++.+.+.|...... ..+++.+..+ ...++|.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~pF~s~~~~~gv~~~g~~~~kGa~e~il~~~~~~g~~-~~~~~~~~~~-------~~a~~G~~ 426 (679)
T PRK01122 355 QRFNLRERDLQSLHATFVPFSAQTRMSGVDLDGREIRKGAVDAIRRYVESNGGH-FPAELDAAVD-------EVARKGGT 426 (679)
T ss_pred hhcCCCchhhccccceeEeecCcCceEEEEECCEEEEECCHHHHHHHHHhcCCc-ChHHHHHHHH-------HHHhCCCc
Confidence 6 3432111 111122222344443 678999999999999888543221 0112222211 23567889
Q ss_pred EEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHH
Q 002770 668 VVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTL 747 (883)
Q Consensus 668 ~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l 747 (883)
++++++++. ++|+++++|++|+|+++++++||++||+++|+|||++.+|.++|+++||+ +++++++||||.++|+.+
T Consensus 427 ~l~va~~~~-~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId--~v~A~~~PedK~~iV~~l 503 (679)
T PRK01122 427 PLVVAEDNR-VLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD--DFLAEATPEDKLALIRQE 503 (679)
T ss_pred EEEEEECCe-EEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc--EEEccCCHHHHHHHHHHH
Confidence 999998876 99999999999999999999999999999999999999999999999997 799999999999999999
Q ss_pred hhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 748 QTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNV 827 (883)
Q Consensus 748 ~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~ 827 (883)
|++|+.|+|+|||+||+|||++||||||| ++|++.++++||+|+++||+..+++++++||++.-+--.--.|++. |-
T Consensus 504 Q~~G~~VaMtGDGvNDAPALa~ADVGIAM--gsGTdvAkeAADiVLldd~~s~Iv~av~~GR~~~~tr~~~~~f~~~-n~ 580 (679)
T PRK01122 504 QAEGRLVAMTGDGTNDAPALAQADVGVAM--NSGTQAAKEAGNMVDLDSNPTKLIEVVEIGKQLLMTRGALTTFSIA-ND 580 (679)
T ss_pred HHcCCeEEEECCCcchHHHHHhCCEeEEe--CCCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHHhhhHhhhhhhHH-HH
Confidence 99999999999999999999999999999 7899999999999999999999999999999998554444556654 53
Q ss_pred -----HHHHHHHhhhhcccC
Q 002770 828 -----VAIPIAAGALLPQYD 842 (883)
Q Consensus 828 -----~~i~la~~~~~~~~g 842 (883)
..+|..+...||..+
T Consensus 581 ~~~~~~i~p~~~~~~~~~~~ 600 (679)
T PRK01122 581 VAKYFAIIPAMFAATYPQLN 600 (679)
T ss_pred HHHHHHHHHHHHHhhCcccc
Confidence 455655566677655
No 10
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=9.2e-87 Score=779.08 Aligned_cols=510 Identities=27% Similarity=0.346 Sum_probs=423.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-ceEE-EEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCCCe
Q 002770 284 LLGFVLLGRSLEERARIRASSDMNELLSLVST-QSRL-VITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGET 361 (883)
Q Consensus 284 ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~-~~~v-~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~ 361 (883)
+++..++|+++|.+++.|+++++++|+++.|+ ++++ .| ||++++||+++|+|||+|.|++||+
T Consensus 72 l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~r---------------dg~~~~I~a~eLv~GDiV~v~~Gd~ 136 (673)
T PRK14010 72 LLLTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIKQ---------------DGSYEMIDASDLKKGHIVRVATGEQ 136 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEe---------------CCEEEEEEHHHcCCCCEEEECCCCc
Confidence 34445579999999999999999999999986 7764 45 8899999999999999999999999
Q ss_pred eeeeEEEEeeceEEeeccccCCCceeeccCC---CccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCChhHH
Q 002770 362 IPVDGRVLAGRSVVDESMLSGESLPVFKEEG---FTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQR 438 (883)
Q Consensus 362 IPaDg~vl~G~~~Vdes~LTGEs~pv~K~~g---~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~ 438 (883)
||+||+|++|++.||||+|||||.|+.|++| +.||+||.+.+|+++++|+++|.+|+++||++++++++.+|+|+|.
T Consensus 137 IPaDG~vieG~~~VDESaLTGES~PV~K~~g~d~~~V~aGT~v~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~ 216 (673)
T PRK14010 137 IPNDGKVIKGLATVDESAITGESAPVIKESGGDFDNVIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEI 216 (673)
T ss_pred ccCCeEEEEcceEEecchhcCCCCceeccCCCccCeeecCceeecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHH
Confidence 9999999999999999999999999999999 8899999999999999999999999999999999999999999996
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHHHHH
Q 002770 439 LADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTS 518 (883)
Q Consensus 439 ~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~ 518 (883)
..+.+.. .+.+..+++++|++....+ ..+...+...+++++.+|||+|+..+|.+...++.
T Consensus 217 ~l~~l~~-----~l~ii~l~~~~~~~~~~~~--------------~~~~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~ 277 (673)
T PRK14010 217 ALFTLLM-----TLTIIFLVVILTMYPLAKF--------------LNFNLSIAMLIALAVCLIPTTIGGLLSAIGIAGMD 277 (673)
T ss_pred HHHHHHH-----HHhHHHHHHHHHHHHHHhh--------------ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 5544322 2222222233332211000 01223456677788888999999999999999999
Q ss_pred HHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEecc-CCChHHHHHHHHHhhhccCChHHHHHHHHHHhcC
Q 002770 519 LGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASF-VYDESEILKIAAAVEKTATHPIAKAIVNKAESLN 597 (883)
Q Consensus 519 ~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~-~~~~~~~l~~~a~~e~~s~hPi~~Ai~~~~~~~~ 597 (883)
+++|+|+++|+++++|++|++|++|||||||||+|++.+.++.+. +.+.++++..++.++..+.||+++||++++++.+
T Consensus 278 r~ak~gvLvk~~~avE~lg~v~vI~~DKTGTLT~Gn~~~~~~~~~~~~~~~~ll~~a~~~~~~s~~P~~~AIv~~a~~~~ 357 (673)
T PRK14010 278 RVTQFNILAKSGRSVETCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFERLVKAAYESSIADDTPEGRSIVKLAYKQH 357 (673)
T ss_pred HHhhCCEEEeCcHHHHHhhCCCEEEEeCCCcCCCCCeEEEEEEeCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999888777543 4456678888888888999999999999998876
Q ss_pred CCCCC-CcCc-ccc---cCceEEEEECCEEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEE
Q 002770 598 LTSPI-TRGQ-LAE---PGFGILGEVDGRLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVG 672 (883)
Q Consensus 598 ~~~~~-~~~~-~~~---~g~g~~~~~~g~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a 672 (883)
++.+. ..++ ... .+.|+ .++++.+.||+++++.++|....... ..++....+ ...++|.++++++
T Consensus 358 ~~~~~~~~~~~pF~~~~k~~gv--~~~g~~i~kGa~~~il~~~~~~g~~~-~~~~~~~~~-------~~a~~G~~~l~v~ 427 (673)
T PRK14010 358 IDLPQEVGEYIPFTAETRMSGV--KFTTREVYKGAPNSMVKRVKEAGGHI-PVDLDALVK-------GVSKKGGTPLVVL 427 (673)
T ss_pred CCchhhhcceeccccccceeEE--EECCEEEEECCHHHHHHHhhhcCCCC-chHHHHHHH-------HHHhCCCeEEEEE
Confidence 55321 1111 111 13343 36788899999999998887532211 011111111 1345788888888
Q ss_pred ecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCC
Q 002770 673 REGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGH 752 (883)
Q Consensus 673 ~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~ 752 (883)
.++. ++|+++++|++|+|++++|++||++|++++|+|||++.+|.++|+++||+ +++++++||||.++|+.+|++|+
T Consensus 428 ~~~~-~lG~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~--~v~A~~~PedK~~iV~~lQ~~G~ 504 (673)
T PRK14010 428 EDNE-ILGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVD--RFVAECKPEDKINVIREEQAKGH 504 (673)
T ss_pred ECCE-EEEEEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc--eEEcCCCHHHHHHHHHHHHhCCC
Confidence 7665 99999999999999999999999999999999999999999999999997 79999999999999999999999
Q ss_pred eEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 002770 753 HVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNV---VA 829 (883)
Q Consensus 753 ~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~---~~ 829 (883)
.|+|+|||+||+|||++||||||| ++|+|.|+++||+|+++||+..|++++++||++|.|+++.+.|.+..|+ ++
T Consensus 505 ~VaMtGDGvNDAPALa~ADVGIAM--gsGTdvAkeAADiVLldd~ls~Iv~av~~gR~i~~n~~~~~~f~~~~~~~~~~~ 582 (673)
T PRK14010 505 IVAMTGDGTNDAPALAEANVGLAM--NSGTMSAKEAANLIDLDSNPTKLMEVVLIGKQLLMTRGSLTTFSIANDIAKYFA 582 (673)
T ss_pred EEEEECCChhhHHHHHhCCEEEEe--CCCCHHHHHhCCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHheeeeccHHHHHH
Confidence 999999999999999999999999 7899999999999999999999999999999999999999999999886 33
Q ss_pred HHHH-HhhhhcccC
Q 002770 830 IPIA-AGALLPQYD 842 (883)
Q Consensus 830 i~la-~~~~~~~~g 842 (883)
|..| +...||.++
T Consensus 583 i~~a~~~~~~~~~~ 596 (673)
T PRK14010 583 ILPAMFMAAMPAMN 596 (673)
T ss_pred HHHHHHHHhcccch
Confidence 3333 344556544
No 11
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=7.6e-86 Score=805.89 Aligned_cols=563 Identities=21% Similarity=0.286 Sum_probs=457.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCC
Q 002770 280 EPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPG 359 (883)
Q Consensus 280 ~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~G 359 (883)
.+++++++++++.+++.+++.|+.+++++|.++.|.+++|+|+...+ .+|++++|+++||+|||+|.|++|
T Consensus 124 ~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~ViR~g~~~---------~~g~~~~I~~~eLvpGDiV~l~~G 194 (902)
T PRK10517 124 AAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDK---------GENGWLEIPIDQLVPGDIIKLAAG 194 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCccC---------CCCeEEEEEHHhCCCCCEEEECCC
Confidence 46677778889999999999999999999999999999999821000 027899999999999999999999
Q ss_pred CeeeeeEEEEeec-eEEeeccccCCCceeeccCCC-------------ccccceeeecCcEEEEEEeecCccchhhhhhh
Q 002770 360 ETIPVDGRVLAGR-SVVDESMLSGESLPVFKEEGF-------------TVSAGTINWDGPLRIEACSTGSNSMISKIVSM 425 (883)
Q Consensus 360 e~IPaDg~vl~G~-~~Vdes~LTGEs~pv~K~~g~-------------~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~ 425 (883)
|+|||||+|++|+ ..||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|++||.+|.+|+|.++
T Consensus 195 d~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~GkI~~~ 274 (902)
T PRK10517 195 DMIPADLRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGR 274 (902)
T ss_pred CEEeeeEEEEEcCceEEEecCcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHHHHHHH
Confidence 9999999999997 589999999999999999875 69999999999999999999999999999999
Q ss_pred hHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhccccc
Q 002770 426 VEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCAL 505 (883)
Q Consensus 426 v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL 505 (883)
+++++.+++|+|+.+|+++.+++.++++++.+++++|++.. .++..++.+++++++++|||+|
T Consensus 275 v~~~~~~~t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~~~~-----------------~~~~~~l~~alsv~V~~~Pe~L 337 (902)
T PRK10517 275 VSEQDSEPNAFQQGISRVSWLLIRFMLVMAPVVLLINGYTK-----------------GDWWEAALFALSVAVGLTPEML 337 (902)
T ss_pred hhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhc-----------------CCHHHHHHHHHHHHHHHcccHH
Confidence 99998999999999999999998888887777766654322 1244568889999999999999
Q ss_pred chhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEec-cCCChHHHHHHHHHh---hhcc
Q 002770 506 GLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVAS-FVYDESEILKIAAAV---EKTA 581 (883)
Q Consensus 506 ~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~-~~~~~~~~l~~~a~~---e~~s 581 (883)
+++++++++.+..+++|+|+++|+++++|+||++|+||||||||||+|+|+|.++.. .+.+.++++..++.. +...
T Consensus 338 P~~vt~~la~g~~~mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~~~~~~~~~~ll~~a~l~~~~~~~~ 417 (902)
T PRK10517 338 PMIVTSTLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGL 417 (902)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEecCCCCCHHHHHHHHHhcCCcCCCC
Confidence 999999999999999999999999999999999999999999999999999998753 234456677665542 2345
Q ss_pred CChHHHHHHHHHHhcCCC-----CCCCcCccccc-CceEEEEEC---C--EEEEecCHHHHHHHhhccCCCchhhhHHH-
Q 002770 582 THPIAKAIVNKAESLNLT-----SPITRGQLAEP-GFGILGEVD---G--RLVAVGTLEWVYERFQKQGDHSDVQHLEH- 649 (883)
Q Consensus 582 ~hPi~~Ai~~~~~~~~~~-----~~~~~~~~~~~-g~g~~~~~~---g--~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~- 649 (883)
.||++.|++.+++..+.. .+........+ .+++...++ + ..+.||+++.+.++|...........+.+
T Consensus 418 ~~p~d~All~~a~~~~~~~~~~~~~~~~~~pFds~~k~msvvv~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~ 497 (902)
T PRK10517 418 KNLLDTAVLEGVDEESARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLICKGALEEILNVCSQVRHNGEIVPLDDI 497 (902)
T ss_pred CCHHHHHHHHHHHhcchhhhhhcCceEEEeeeCCCcceEEEEEEECCCeEEEEEeCchHHHHHhchhhhcCCCeecCCHH
Confidence 799999999988754210 11111111111 334443332 2 46899999999999875322111111100
Q ss_pred HHhhhcccccCcCCCCCeEEEEEec---------------CceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcH
Q 002770 650 AVTHQSSELASPSNYSKSVVYVGRE---------------GEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDRE 714 (883)
Q Consensus 650 ~~~~~~~~~~~~~~~g~~~~~~a~~---------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~ 714 (883)
...++......+..+|.+++++++. +..++|+++|+|++|++++++|++|+++||+++|+|||++
T Consensus 498 ~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~e~~l~~lGli~~~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~ 577 (902)
T PRK10517 498 MLRRIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGVTVKILTGDSE 577 (902)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEEecCCccccccccccccCceeeehHhhhCcchhhHHHHHHHHHHCCCEEEEEcCCCH
Confidence 0011111122345678999999862 4579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCc-----------------------eEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCC
Q 002770 715 EAVAATAKEVGIGKE-----------------------YINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALAD 771 (883)
Q Consensus 715 ~~a~~ia~~~gi~~~-----------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~Ad 771 (883)
.+|.++|+++||+.+ .+|+|++|+||.++|+.||++|+.|+|+|||+||+|||++||
T Consensus 578 ~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~~IV~~Lq~~G~vVam~GDGvNDaPALk~AD 657 (902)
T PRK10517 578 LVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAPALRAAD 657 (902)
T ss_pred HHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHHHHHHHHHHCCCEEEEECCCcchHHHHHhCC
Confidence 999999999999621 699999999999999999999999999999999999999999
Q ss_pred eeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcccCccccHHHH
Q 002770 772 VGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAA-GALLPQYDFAMTPSLS 850 (883)
Q Consensus 772 vgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~-~~~~~~~g~~l~P~~a 850 (883)
||||| ++|+|.|+++||+|+++||+..|++++++||++++||++++.|.+..|+..+...+ +.++ ++ ..|+.+
T Consensus 658 VGIAm--g~gtdvAkeaADiVLldd~~~~I~~ai~~gR~i~~nI~k~i~~~ls~n~~~v~~~~~~~~~--~~--~~pl~~ 731 (902)
T PRK10517 658 IGISV--DGAVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASAF--LP--FLPMLP 731 (902)
T ss_pred EEEEe--CCcCHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hh--hhhhHH
Confidence 99999 68999999999999999999999999999999999999999999999985444332 2221 11 236666
Q ss_pred HHHhhhhhHHHHHhhhhcccccccc
Q 002770 851 GGLMALSSIFVVSNSLLLQFHEFES 875 (883)
Q Consensus 851 a~~m~~ssl~v~~nsl~l~~~~~~~ 875 (883)
..+....-+.- +-++.|.+.+++.
T Consensus 732 ~qiL~inl~~D-~~~~al~~d~~~~ 755 (902)
T PRK10517 732 LHLLIQNLLYD-VSQVAIPFDNVDD 755 (902)
T ss_pred HHHHHHHHHHH-HhHHhhcCCCCCh
Confidence 66667666666 3477787765443
No 12
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=4.7e-85 Score=799.76 Aligned_cols=563 Identities=23% Similarity=0.295 Sum_probs=454.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCC
Q 002770 280 EPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPG 359 (883)
Q Consensus 280 ~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~G 359 (883)
.+++++++++++.+++.+++.|+++++++|.++.+.+++|+|....+ .||++++|+++||+|||+|.+++|
T Consensus 90 ~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~---------~dg~~~~I~~~eLv~GDiV~l~~G 160 (867)
T TIGR01524 90 ATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVLRVINEN---------GNGSMDEVPIDALVPGDLIELAAG 160 (867)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEEEecccC---------CCCeEEEEEhhcCCCCCEEEECCC
Confidence 45566667778888999999999999999999999999888721000 058899999999999999999999
Q ss_pred CeeeeeEEEEeec-eEEeeccccCCCceeeccCCC-------------ccccceeeecCcEEEEEEeecCccchhhhhhh
Q 002770 360 ETIPVDGRVLAGR-SVVDESMLSGESLPVFKEEGF-------------TVSAGTINWDGPLRIEACSTGSNSMISKIVSM 425 (883)
Q Consensus 360 e~IPaDg~vl~G~-~~Vdes~LTGEs~pv~K~~g~-------------~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~ 425 (883)
|+|||||+|++|+ ..||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|++||.+|.+|+|.++
T Consensus 161 d~VPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~ 240 (867)
T TIGR01524 161 DIIPADARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIA 240 (867)
T ss_pred CEEcccEEEEecCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHH
Confidence 9999999999997 589999999999999999875 59999999999999999999999999999999
Q ss_pred hHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhccccc
Q 002770 426 VEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCAL 505 (883)
Q Consensus 426 v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL 505 (883)
+++ +.+++|+|+.+|+++.++.+++++++.+++++|++.. .++..++.+++++++++|||+|
T Consensus 241 v~~-~~~~t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~al~l~v~~iP~~L 302 (867)
T TIGR01524 241 ATE-RRGQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGLMK-----------------GDWLEAFLFALAVAVGLTPEML 302 (867)
T ss_pred hhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHheehHHHhc-----------------CCHHHHHHHHHHHHHHhCcchH
Confidence 988 7778999999999999999988888877776664322 1244568889999999999999
Q ss_pred chhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEecc-CCChHHHHHHHHH---hhhcc
Q 002770 506 GLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASF-VYDESEILKIAAA---VEKTA 581 (883)
Q Consensus 506 ~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~-~~~~~~~l~~~a~---~e~~s 581 (883)
+++++++++.+..+++|+|+++|+++++|+||++|+||||||||||+|+|+|.++... +.+.++++..++. .+..+
T Consensus 303 p~~vt~~la~g~~~mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~~~~~~~~~~~l~~a~l~~~~~~~~ 382 (867)
T TIGR01524 303 PMIVSSNLAKGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHIDSSGETSERVLKMAWLNSYFQTGW 382 (867)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEecCCCCCHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999998643 3345667766653 22345
Q ss_pred CChHHHHHHHHHHhcCCCC--CCCcCccccc----CceEEEEECC-----EEEEecCHHHHHHHhhccCCCchhhhHHH-
Q 002770 582 THPIAKAIVNKAESLNLTS--PITRGQLAEP----GFGILGEVDG-----RLVAVGTLEWVYERFQKQGDHSDVQHLEH- 649 (883)
Q Consensus 582 ~hPi~~Ai~~~~~~~~~~~--~~~~~~~~~~----g~g~~~~~~g-----~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~- 649 (883)
.||+++|+++++.+..... .........| ++++...+++ ..+.||+++.+.++|...........+.+
T Consensus 383 ~~p~~~Al~~~~~~~~~~~~~~~~~~~~~~pF~s~~k~ms~~v~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~ 462 (867)
T TIGR01524 383 KNVLDHAVLAKLDESAARQTASRWKKVDEIPFDFDRRRLSVVVENRAEVTRLICKGAVEEMLTVCTHKRFGGAVVTLSES 462 (867)
T ss_pred CChHHHHHHHHHHhhchhhHhhcCceEEEeccCCCcCEEEEEEEcCCceEEEEEeCcHHHHHHhchhhhcCCceecCCHH
Confidence 7999999999887532110 0001111122 4566555432 46899999999998864322111100000
Q ss_pred HHhhhcccccCcCCCCCeEEEEEec---------------CceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcH
Q 002770 650 AVTHQSSELASPSNYSKSVVYVGRE---------------GEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDRE 714 (883)
Q Consensus 650 ~~~~~~~~~~~~~~~g~~~~~~a~~---------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~ 714 (883)
...++.+....+..+|.+++++++. +.+++|+++|+|++|++++++|++||++||+++|+|||+.
T Consensus 463 ~~~~i~~~~~~~a~~G~rvlavA~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~ 542 (867)
T TIGR01524 463 EKSELQDMTAEMNRQGIRVIAVATKTLKVGEADFTKTDEEQLIIEGFLGFLDPPKESTKEAIAALFKNGINVKVLTGDNE 542 (867)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEEeccCcccccccccccCCcEEEEEEEeeCCCchhHHHHHHHHHHCCCEEEEEcCCCH
Confidence 0001111122346688999999871 2369999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCc-----------------------eEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCC
Q 002770 715 EAVAATAKEVGIGKE-----------------------YINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALAD 771 (883)
Q Consensus 715 ~~a~~ia~~~gi~~~-----------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~Ad 771 (883)
.+|.++|+++||..+ .+|+|++|+||.++|+.||++|+.|+|+|||+||+|||++||
T Consensus 543 ~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~vVam~GDGvNDapALk~Ad 622 (867)
T TIGR01524 543 IVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAPALRKAD 622 (867)
T ss_pred HHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHHHHHHHHHhCCCEEEEECCCcccHHHHHhCC
Confidence 999999999999621 799999999999999999999999999999999999999999
Q ss_pred eeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcccCccccHHHH
Q 002770 772 VGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAA-GALLPQYDFAMTPSLS 850 (883)
Q Consensus 772 vgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~-~~~~~~~g~~l~P~~a 850 (883)
||||| ++|+|.++++||+|+++||++.|++++++||++++||+||+.|.+..|+..+...+ +.++ + ...|+.+
T Consensus 623 VGIAm--g~gtdvAk~aADiVLldd~~~~I~~ai~~gR~i~~ni~k~i~~~ls~n~~~~~~~~~~~~~--~--~~~pl~~ 696 (867)
T TIGR01524 623 VGISV--DTAADIAKEASDIILLEKSLMVLEEGVIEGRNTFGNILKYLKMTASSNFGNVFSVLVASAF--I--PFLPMLS 696 (867)
T ss_pred EEEEe--CCccHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--h--hhhhHHH
Confidence 99999 68999999999999999999999999999999999999999999988764433222 2221 1 1246666
Q ss_pred HHHhhhhhHHHHHhhhhccccccccc
Q 002770 851 GGLMALSSIFVVSNSLLLQFHEFESN 876 (883)
Q Consensus 851 a~~m~~ssl~v~~nsl~l~~~~~~~~ 876 (883)
..+..+.-+.- +-++.|.+.+++.+
T Consensus 697 ~qil~inl~~d-~~~~al~~~~~~~~ 721 (867)
T TIGR01524 697 LHLLIQNLLYD-FSQLTLPWDKMDRE 721 (867)
T ss_pred HHHHHHHHHHH-HHHHhhcCCCCChH
Confidence 66666666666 46788877655443
No 13
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=5.6e-84 Score=754.42 Aligned_cols=521 Identities=28% Similarity=0.404 Sum_probs=435.4
Q ss_pred cchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-eEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCC
Q 002770 276 SFFEEPVM--LLGFVLLGRSLEERARIRASSDMNELLSLVSTQ-SRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGD 352 (883)
Q Consensus 276 ~~f~~~~~--ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~-~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GD 352 (883)
.||+..+. +++.+++++++|.+++.|+++.+++|.++.|++ +++++. ||++++|++++|++||
T Consensus 63 ~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr~--------------dg~~~~V~~~~L~~GD 128 (675)
T TIGR01497 63 ALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLRD--------------DGAIDKVPADQLKKGD 128 (675)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEee--------------CCEEEEEEHHHCCCCC
Confidence 46655433 344478999999999999999999999999875 777641 7889999999999999
Q ss_pred EEEECCCCeeeeeEEEEeeceEEeeccccCCCceeeccCCCc---cccceeeecCcEEEEEEeecCccchhhhhhhhHhh
Q 002770 353 SVLVLPGETIPVDGRVLAGRSVVDESMLSGESLPVFKEEGFT---VSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEA 429 (883)
Q Consensus 353 iV~v~~Ge~IPaDg~vl~G~~~Vdes~LTGEs~pv~K~~g~~---v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~ 429 (883)
+|.|++||+||+||+|++|++.||||+|||||.||.|++|+. |++||.|.+|.++++|+++|.+|+++||+++++++
T Consensus 129 iV~V~~Gd~IPaDG~vieG~~~VDESaLTGES~PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S~lgri~~lve~a 208 (675)
T TIGR01497 129 IVLVEAGDVIPCDGEVIEGVASVDESAITGESAPVIKESGGDFASVTGGTRILSDWLVVECTANPGETFLDRMIALVEGA 208 (675)
T ss_pred EEEECCCCEEeeeEEEEEccEEEEcccccCCCCceeecCCCCcceeecCcEEEeeEEEEEEEEecccCHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999985 99999999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhH
Q 002770 430 QGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLAT 509 (883)
Q Consensus 430 ~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~ 509 (883)
+.+|+|+|...+.+..++.. +++++. +.+|.+.... +. ..++..++++++++|||+++...
T Consensus 209 ~~~ktplq~~l~~l~~~l~~-v~li~~--~~~~~~~~~~--------------~~--~~~~~~lvallV~aiP~aLg~l~ 269 (675)
T TIGR01497 209 QRRKTPNEIALTILLIALTL-VFLLVT--ATLWPFAAYG--------------GN--AISVTVLVALLVCLIPTTIGGLL 269 (675)
T ss_pred ccCCChHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHhc--------------Ch--hHHHHHHHHHHHHhCchhhhhHH
Confidence 99999999877766544433 332222 2223221100 01 12466779999999999999888
Q ss_pred HHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEecc-CCChHHHHHHHHHhhhccCChHHHH
Q 002770 510 PTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASF-VYDESEILKIAAAVEKTATHPIAKA 588 (883)
Q Consensus 510 p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~-~~~~~~~l~~~a~~e~~s~hPi~~A 588 (883)
|.....++.+++|+|+++|+++++|++|++|++|||||||||+|+|++.++++. +.++++++..++..+..++||.++|
T Consensus 270 ~av~iag~~r~ar~gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~aa~~~~~s~hP~a~A 349 (675)
T TIGR01497 270 SAIGIAGMDRVLGFNVIATSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPAQGVDEKTLADAAQLASLADDTPEGKS 349 (675)
T ss_pred HHHHHHHHHHHHHCCeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEecCCCcHHHHHHHHHHhcCCCCCcHHHH
Confidence 888889999999999999999999999999999999999999999999998753 5567889999999999999999999
Q ss_pred HHHHHHhcCCCCCC----CcCcccccCc-eEEEE--ECCEEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCc
Q 002770 589 IVNKAESLNLTSPI----TRGQLAEPGF-GILGE--VDGRLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASP 661 (883)
Q Consensus 589 i~~~~~~~~~~~~~----~~~~~~~~g~-g~~~~--~~g~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (883)
+++++++.+..... ..++...++. ++++. .+|+.+.||+++++.+.+...... ...++.+... ..
T Consensus 350 iv~~a~~~~~~~~~~~~~~~~~~pf~~~~~~sg~~~~~g~~~~kGa~e~i~~~~~~~g~~-~~~~~~~~~~-------~~ 421 (675)
T TIGR01497 350 IVILAKQLGIREDDVQSLHATFVEFTAQTRMSGINLDNGRMIRKGAVDAIKRHVEANGGH-IPTDLDQAVD-------QV 421 (675)
T ss_pred HHHHHHHcCCCccccccccceEEEEcCCCcEEEEEEeCCeEEEECCHHHHHHHHHhcCCC-CcHHHHHHHH-------HH
Confidence 99999887654321 1122333333 56554 478999999999998877532211 0111222221 23
Q ss_pred CCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchH
Q 002770 662 SNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKS 741 (883)
Q Consensus 662 ~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~ 741 (883)
.++|.+++++++++. ++|+++++|++||+++++|++||++|++++|+|||+..+|.++|+++||+ +++++++|+||.
T Consensus 422 a~~G~r~l~va~~~~-~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~--~v~a~~~PedK~ 498 (675)
T TIGR01497 422 ARQGGTPLVVCEDNR-IYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVD--DFIAEATPEDKI 498 (675)
T ss_pred HhCCCeEEEEEECCE-EEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC--EEEcCCCHHHHH
Confidence 567899999999876 99999999999999999999999999999999999999999999999997 799999999999
Q ss_pred HHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 002770 742 EVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSW 821 (883)
Q Consensus 742 ~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~ 821 (883)
++|+.+|++|+.|+|+|||.||+|||++||||||| +++++.++++||+++++||+..+++++++||+++-+...-..|
T Consensus 499 ~~v~~lq~~g~~VamvGDG~NDapAL~~AdvGiAm--~~gt~~akeaadivLldd~~s~Iv~av~~GR~~~~t~~~~~t~ 576 (675)
T TIGR01497 499 ALIRQEQAEGKLVAMTGDGTNDAPALAQADVGVAM--NSGTQAAKEAANMVDLDSDPTKLIEVVHIGKQLLITRGALTTF 576 (675)
T ss_pred HHHHHHHHcCCeEEEECCCcchHHHHHhCCEeEEe--CCCCHHHHHhCCEEECCCCHHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999999 7899999999999999999999999999999999988888888
Q ss_pred HHHHHH----HHHHHHHhhhhcccC
Q 002770 822 AVAYNV----VAIPIAAGALLPQYD 842 (883)
Q Consensus 822 a~~~n~----~~i~la~~~~~~~~g 842 (883)
++.-++ ..+|..+...||.++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (675)
T TIGR01497 577 SIANDVAKYFAIIPAIFAAAYPQLQ 601 (675)
T ss_pred eecccHHHHHHHHHHHHHhhCcchh
Confidence 876554 345555555566544
No 14
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=4.2e-84 Score=791.91 Aligned_cols=564 Identities=22% Similarity=0.307 Sum_probs=448.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECC
Q 002770 279 EEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLP 358 (883)
Q Consensus 279 ~~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~ 358 (883)
..+++++++++++.+++.+++.|+.+++++|.++.|.+++|+|+...+ .+|++++||++||+|||+|.|++
T Consensus 112 ~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~---------~~g~~~~I~~~eLv~GDiV~l~~ 182 (903)
T PRK15122 112 TGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAG---------AEPVRREIPMRELVPGDIVHLSA 182 (903)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccC---------CCCeEEEEEHHHCCCCCEEEECC
Confidence 345666677888899999999999999999999999999999821000 02688999999999999999999
Q ss_pred CCeeeeeEEEEeec-eEEeeccccCCCceeeccC-----------------------CCccccceeeecCcEEEEEEeec
Q 002770 359 GETIPVDGRVLAGR-SVVDESMLSGESLPVFKEE-----------------------GFTVSAGTINWDGPLRIEACSTG 414 (883)
Q Consensus 359 Ge~IPaDg~vl~G~-~~Vdes~LTGEs~pv~K~~-----------------------g~~v~aGt~~~~G~~~~~v~~~g 414 (883)
||+|||||+|++|+ ..||||+|||||.|+.|.+ ++.+|+||.+.+|.++++|++||
T Consensus 183 Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG 262 (903)
T PRK15122 183 GDMIPADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATG 262 (903)
T ss_pred CCEEeeeEEEEEcCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEec
Confidence 99999999999997 4799999999999999975 26799999999999999999999
Q ss_pred CccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHH
Q 002770 415 SNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSV 494 (883)
Q Consensus 415 ~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 494 (883)
.+|.+|+|.+++++ ...++|+|+.++++..++..+.+.++.+++++.++. ...+..++.+++
T Consensus 263 ~~T~~gkI~~~v~~-~~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~~~-----------------~~~~~~~l~~ai 324 (903)
T PRK15122 263 SRTYFGSLAKSIVG-TRAQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFT-----------------KGDWLEALLFAL 324 (903)
T ss_pred cccHhhHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----------------cCCHHHHHHHHH
Confidence 99999999999987 566789999999998877666555544444332211 123456788899
Q ss_pred HHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEecc-CCChHHHHHH
Q 002770 495 DVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASF-VYDESEILKI 573 (883)
Q Consensus 495 ~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~-~~~~~~~l~~ 573 (883)
++++++|||+|+++++++++.+..+++|+|+++|+++++|+||++|+||||||||||+|+|+|.+++.. +.++++++.+
T Consensus 325 sl~V~~~Pe~Lp~~vt~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~~~~~~~~~~l~~ 404 (903)
T PRK15122 325 AVAVGLTPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLDVSGRKDERVLQL 404 (903)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEcCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998653 3345567766
Q ss_pred HHHh---hhccCChHHHHHHHHHHhcCCCCC--CCcCcccccCc---eEEEEE----CC--EEEEecCHHHHHHHhhccC
Q 002770 574 AAAV---EKTATHPIAKAIVNKAESLNLTSP--ITRGQLAEPGF---GILGEV----DG--RLVAVGTLEWVYERFQKQG 639 (883)
Q Consensus 574 ~a~~---e~~s~hPi~~Ai~~~~~~~~~~~~--~~~~~~~~~g~---g~~~~~----~g--~~~~~Gs~~~i~~~~~~~~ 639 (883)
++.. +..+.||+++|+++++.+.+.... ......+.|+. +..+.+ ++ ..+.||+++.++++|....
T Consensus 405 a~l~s~~~~~~~~p~e~All~~a~~~~~~~~~~~~~~~~~~pF~s~~k~ms~v~~~~~~~~~~~~KGa~e~il~~c~~~~ 484 (903)
T PRK15122 405 AWLNSFHQSGMKNLMDQAVVAFAEGNPEIVKPAGYRKVDELPFDFVRRRLSVVVEDAQGQHLLICKGAVEEMLAVATHVR 484 (903)
T ss_pred HHHhCCCCCCCCChHHHHHHHHHHHcCchhhhhcCceEEEeeeCCCcCEEEEEEEcCCCcEEEEECCcHHHHHHhchhhh
Confidence 5432 344679999999999987654211 11122333332 222221 33 3567899999999987532
Q ss_pred CCchhhhHHH-HHhhhcccccCcCCCCCeEEEEEec-----------------CceEEEEEEecCCCChhHHHHHHHHHH
Q 002770 640 DHSDVQHLEH-AVTHQSSELASPSNYSKSVVYVGRE-----------------GEGIIGAIAISDSLRHDAEHTVRSLQQ 701 (883)
Q Consensus 640 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~a~~-----------------~~~~lG~i~l~D~lr~~~~~~i~~L~~ 701 (883)
.......+.. ..+++.+....+..+|.+++++++. +..++|+++|+|++|++++++|++||+
T Consensus 485 ~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~a~~aI~~l~~ 564 (903)
T PRK15122 485 DGDTVRPLDEARRERLLALAEAYNADGFRVLLVATREIPGGESRAQYSTADERDLVIRGFLTFLDPPKESAAPAIAALRE 564 (903)
T ss_pred cCCCeecCCHHHHHHHHHHHHHHHhCCCEEEEEEEeccCccccccccccccccCcEEEEEEeccCccHHHHHHHHHHHHH
Confidence 2111101100 0011111122346688999998851 347999999999999999999999999
Q ss_pred CCCEEEEEcCCcHHHHHHHHHHcCCCC-----------------------ceEEEecCccchHHHHHHHhhcCCeEEEEc
Q 002770 702 KGIKTLLLSGDREEAVAATAKEVGIGK-----------------------EYINSSLTPQQKSEVISTLQTSGHHVAMVG 758 (883)
Q Consensus 702 ~Gi~v~~lTGd~~~~a~~ia~~~gi~~-----------------------~~v~~~~~p~~K~~~v~~l~~~g~~v~~vG 758 (883)
+||+++|+|||++.+|.++|+++||.. ..+|+|++|+||.++|+.||++|+.|+|+|
T Consensus 565 aGI~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~G~vVamtG 644 (903)
T PRK15122 565 NGVAVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRVLKALQANGHTVGFLG 644 (903)
T ss_pred CCCeEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHHHHHHHhCCCEEEEEC
Confidence 999999999999999999999999952 169999999999999999999999999999
Q ss_pred CCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhh
Q 002770 759 DGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAA-GAL 837 (883)
Q Consensus 759 Dg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~-~~~ 837 (883)
||+||+|||++||||||| ++|+|.|+++||+|+++||+..|++++++||++++||++++.|.+..|+..+...+ +.+
T Consensus 645 DGvNDaPALk~ADVGIAm--g~gtdvAkeaADiVLldd~f~~Iv~ai~~gR~i~~nI~k~i~~~ls~n~~~~~~~~~~~~ 722 (903)
T PRK15122 645 DGINDAPALRDADVGISV--DSGADIAKESADIILLEKSLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNVFSVLVASA 722 (903)
T ss_pred CCchhHHHHHhCCEEEEe--CcccHHHHHhcCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999999 68999999999999999999999999999999999999999999999874433322 222
Q ss_pred hcccCccccHHHHHHHhhhhhHHHHHhhhhccccccccc
Q 002770 838 LPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQFHEFESN 876 (883)
Q Consensus 838 ~~~~g~~l~P~~aa~~m~~ssl~v~~nsl~l~~~~~~~~ 876 (883)
+ + ...|+.+..+....-+.-. -++.|.+.+++++
T Consensus 723 ~--~--~~~pl~~~qil~~nli~D~-~~lal~~d~~~~~ 756 (903)
T PRK15122 723 F--I--PFLPMLAIHLLLQNLMYDI-SQLSLPWDKMDKE 756 (903)
T ss_pred H--h--ccchhHHHHHHHHHHHHHH-HHHhhcCCCCCHh
Confidence 1 1 1246666666666666664 5788877755544
No 15
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=1e-82 Score=788.48 Aligned_cols=574 Identities=22% Similarity=0.268 Sum_probs=448.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEE
Q 002770 276 SFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSL-VSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSV 354 (883)
Q Consensus 276 ~~f~~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~-~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV 354 (883)
.|++..+ +++.+++.-.+...+..++++.+++|.+. .+.+++|+| ||++++|+++||+|||+|
T Consensus 127 ~~~~~~~-il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViR---------------dG~~~~I~~~~Lv~GDiV 190 (941)
T TIGR01517 127 GWIEGVA-ILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIR---------------GGQEQQISIHDIVVGDIV 190 (941)
T ss_pred chHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEE---------------CCEEEEEeHHHCCCCCEE
Confidence 3444333 33333333344445555556666666553 467888888 899999999999999999
Q ss_pred EECCCCeeeeeEEEEee-ceEEeeccccCCCceeeccCCCc--cccceeeecCcEEEEEEeecCccchhhhhhhhHhhhC
Q 002770 355 LVLPGETIPVDGRVLAG-RSVVDESMLSGESLPVFKEEGFT--VSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQG 431 (883)
Q Consensus 355 ~v~~Ge~IPaDg~vl~G-~~~Vdes~LTGEs~pv~K~~g~~--v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~ 431 (883)
.|++||+|||||+|++| ++.||||+|||||.|+.|.+|+. +|+||.+.+|.++++|++||.+|.+|||++++++++
T Consensus 191 ~l~~Gd~IPaD~~li~g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~~~~~~~- 269 (941)
T TIGR01517 191 SLSTGDVVPADGVFISGLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRAEG- 269 (941)
T ss_pred EECCCCEecccEEEEEcCcEEEEecccCCCCCcccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHHHHhhccCC-
Confidence 99999999999999999 79999999999999999999887 999999999999999999999999999999998865
Q ss_pred CCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcC-cccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHH
Q 002770 432 REAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQ-IFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATP 510 (883)
Q Consensus 432 ~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p 510 (883)
+++|+|+.+++++.++.+++++++++.+++|++.... ....-. .+ ....+..+...+.+++++++++|||+|++++|
T Consensus 270 ~~t~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~al~llv~~iP~~Lp~~vt 347 (941)
T TIGR01517 270 EDTPLQEKLSELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDG-RD-TEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVT 347 (941)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-cc-cchhhHHHHHHHHHHHHHHHhhCCCchHHHHH
Confidence 5679999999999999998888888888776432100 000000 00 00012345667889999999999999999999
Q ss_pred HHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccC--CCh-----------HHHHHHHHHh
Q 002770 511 TAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFV--YDE-----------SEILKIAAAV 577 (883)
Q Consensus 511 ~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~--~~~-----------~~~l~~~a~~ 577 (883)
++++.++.+++|+|+++|+++++|+||++|+||||||||||+|+|+|.+++..+ ++. .+++..++..
T Consensus 348 i~l~~~~~~mak~~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 427 (941)
T TIGR01517 348 IALAYSMKKMMKDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQRFNVRDVLRNVPKHVRNILVEGISL 427 (941)
T ss_pred HHHHHHHHHHHhCCCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEEecceEecCcccccCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999886532 110 1223222222
Q ss_pred hh-------------ccCChHHHHHHHHHHhcCCCCC-------CCcCccccc---CceEEEEECC---EEEEecCHHHH
Q 002770 578 EK-------------TATHPIAKAIVNKAESLNLTSP-------ITRGQLAEP---GFGILGEVDG---RLVAVGTLEWV 631 (883)
Q Consensus 578 e~-------------~s~hPi~~Ai~~~~~~~~~~~~-------~~~~~~~~~---g~g~~~~~~g---~~~~~Gs~~~i 631 (883)
+. ...+|++.|+++++++.+.+.. ........+ +.++....++ ..+.||+++.+
T Consensus 428 ~s~~~~~~~~~~~~~~~g~p~e~All~~~~~~~~~~~~~~~~~~~~~~~pF~s~~k~msvv~~~~~~~~~~~~KGA~e~i 507 (941)
T TIGR01517 428 NSSSEEVVDRGGKRAFIGSKTECALLGFLLLLGRDYQEVRAEEKVVKIYPFNSERKFMSVVVKHSGGKVREFRKGASEIV 507 (941)
T ss_pred CCCCccccCCCCccccCCCccHHHHHHHHHHcCCCHHHHHhhchhccccccCCCCCeEEEEEEeCCCcEEEEEECChHHH
Confidence 11 2357889999999887654321 111112222 3344444332 46799999999
Q ss_pred HHHhhccCC----CchhhhHHHHHhhhcccccCcCCCCCeEEEEEec---------------CceEEEEEEecCCCChhH
Q 002770 632 YERFQKQGD----HSDVQHLEHAVTHQSSELASPSNYSKSVVYVGRE---------------GEGIIGAIAISDSLRHDA 692 (883)
Q Consensus 632 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~---------------~~~~lG~i~l~D~lr~~~ 692 (883)
..+|..... .....+..+.+ .+....+..+|.+++++++. ++.++|+++|+|++|+++
T Consensus 508 l~~c~~~~~~~g~~~~~~~~~~~i---~~~~~~~a~~G~Rvl~~A~~~~~~~~~~~~~~~e~~l~~lGli~~~Dplr~~~ 584 (941)
T TIGR01517 508 LKPCRKRLDSNGEATPISDDKDRC---ADVIEPLASDALRTICLAYRDFAPEEFPRKDYPNGGLTLIGVVGIKDPLRPGV 584 (941)
T ss_pred HHhhhHHhhcCCCcccCcHHHHHH---HHHHHHHHhcCCEEEEEEEEecCccccccccccccCcEEEEEeeccCCCchhH
Confidence 999865211 00111111111 11122346688999988862 347999999999999999
Q ss_pred HHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC-------------------------ceEEEecCccchHHHHHHH
Q 002770 693 EHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK-------------------------EYINSSLTPQQKSEVISTL 747 (883)
Q Consensus 693 ~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~-------------------------~~v~~~~~p~~K~~~v~~l 747 (883)
+++|++||++|++++|+|||+..+|.++|+++||.+ ..+|+|++|+||.++|+.|
T Consensus 585 ~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~~iV~~l 664 (941)
T TIGR01517 585 REAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQLLVLML 664 (941)
T ss_pred HHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHHHHHHHH
Confidence 999999999999999999999999999999999963 1699999999999999999
Q ss_pred hhcCCeEEEEcCCccCHHHHHhCCeeEEeecC-CccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 748 QTSGHHVAMVGDGINDAPSLALADVGIALQIE-AQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYN 826 (883)
Q Consensus 748 ~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~-~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n 826 (883)
|++|+.|+|+|||+||+|||++||||||| + +|+|.|+++||+++++|++..|++++++||+++++|+||+.|+++||
T Consensus 665 q~~g~vVam~GDGvNDapALk~AdVGIAm--g~~gtdvAk~aADivL~dd~f~~I~~~i~~gR~~~~ni~k~i~~~l~~n 742 (941)
T TIGR01517 665 KDMGEVVAVTGDGTNDAPALKLADVGFSM--GISGTEVAKEASDIILLDDNFASIVRAVKWGRNVYDNIRKFLQFQLTVN 742 (941)
T ss_pred HHCCCEEEEECCCCchHHHHHhCCcceec--CCCccHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 6 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccCccccHHHHHHHhhhhhHHHHHhhhhccccccccc
Q 002770 827 VVAIPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQFHEFESN 876 (883)
Q Consensus 827 ~~~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~~nsl~l~~~~~~~~ 876 (883)
+..+++++.+.+ ++. ..|+.+..+..++-+...+.++.|.+.+++.+
T Consensus 743 ~~~i~~~~~~~~--~~~-~~pl~~~qil~inl~~d~~~al~l~~e~~~~~ 789 (941)
T TIGR01517 743 VVAVILTFVGSC--ISS-TSPLTAVQLLWVNLIMDTLAALALATEPPTEA 789 (941)
T ss_pred HHHHHHHHHHHH--Hhc-cccHHHHHHHHHHHHHHHhhHHHHccCCccHH
Confidence 998888764332 121 24666667777788888888888876655433
No 16
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=4.5e-82 Score=778.15 Aligned_cols=549 Identities=21% Similarity=0.300 Sum_probs=444.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCCCeeeeeEEE
Q 002770 289 LLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRV 368 (883)
Q Consensus 289 ~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~IPaDg~v 368 (883)
++.-.+..+++.|+.+.+++|.++.|.+++|+| ||++++|+++||+|||+|.|++||+|||||+|
T Consensus 91 ~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~ViR---------------dg~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~i 155 (884)
T TIGR01522 91 LIVVTVGFVQEYRSEKSLEALNKLVPPECHLIR---------------EGKLEHVLASTLVPGDLVCLSVGDRVPADLRI 155 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEE---------------CCEEEEEEHHHCccCCEEEecCCCEEeeeEEE
Confidence 333345555566778889999999999999988 89999999999999999999999999999999
Q ss_pred Eeec-eEEeeccccCCCceeeccCCC--------------ccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCC
Q 002770 369 LAGR-SVVDESMLSGESLPVFKEEGF--------------TVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGRE 433 (883)
Q Consensus 369 l~G~-~~Vdes~LTGEs~pv~K~~g~--------------~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~ 433 (883)
++|+ +.||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|++||.+|.+|+|.+++++++..+
T Consensus 156 i~g~~l~VDES~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~k 235 (884)
T TIGR01522 156 VEAVDLSIDESNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIEKPK 235 (884)
T ss_pred EEcCceEEEcccccCCCcceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHHHhccCCCCC
Confidence 9995 899999999999999999874 7999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHH
Q 002770 434 APIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAI 513 (883)
Q Consensus 434 ~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~ 513 (883)
+|+|+.+|+++.++++++++++++.++++++.+ ..+...+.+++++++++|||+|++++|+++
T Consensus 236 t~lq~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l 298 (884)
T TIGR01522 236 TPLQKSMDLLGKQLSLVSFGVIGVICLVGWFQG-----------------KDWLEMFTISVSLAVAAIPEGLPIIVTVTL 298 (884)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------CCHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 999999999999998877665555544433221 124456888999999999999999999999
Q ss_pred HHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccCCC---------------------------
Q 002770 514 LVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYD--------------------------- 566 (883)
Q Consensus 514 ~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~~~--------------------------- 566 (883)
..+..+++|+|+++|+++++|+||++|+||||||||||+|+|+|.+++..+..
T Consensus 299 ~~~~~r~ak~~ilvk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (884)
T TIGR01522 299 ALGVLRMSKKRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYT 378 (884)
T ss_pred HHHHHHHhhcCCcccchHHHHhccCccEEEecCccccccCeEEEEEEEecCceEeeccCCccCCCCcccccccccccccC
Confidence 99999999999999999999999999999999999999999999998643200
Q ss_pred --hHHHHHHHHHhhhc---------cCChHHHHHHHHHHhcCCCCC-----CCcCcccccCceEEEE---E--CC--EEE
Q 002770 567 --ESEILKIAAAVEKT---------ATHPIAKAIVNKAESLNLTSP-----ITRGQLAEPGFGILGE---V--DG--RLV 623 (883)
Q Consensus 567 --~~~~l~~~a~~e~~---------s~hPi~~Ai~~~~~~~~~~~~-----~~~~~~~~~g~g~~~~---~--~g--~~~ 623 (883)
..+++..++..... ..+|+++|++++++..++... ........+.+..++. . ++ ..+
T Consensus 379 ~~~~~~l~~~~l~~~~~~~~~~~~~~g~p~e~All~~~~~~~~~~~~~~~~~~~~~pF~s~~k~m~v~~~~~~~~~~~~~ 458 (884)
T TIGR01522 379 VAVSRILEAGNLCNNAKFRNEADTLLGNPTDVALIELLMKFGLDDLRETYIRVAEVPFSSERKWMAVKCVHRQDRSEMCF 458 (884)
T ss_pred HHHHHHHHHHhhhCCCeecCCCCCcCCChHHHHHHHHHHHcCcHhHHhhCcEEeEeCCCCCCCeEEEEEEEcCCCeEEEE
Confidence 02334333322211 135999999999987665311 1112222222322222 1 33 467
Q ss_pred EecCHHHHHHHhhccCCC----chhh-hHHHHHhhhcccccCcCCCCCeEEEEEecC----ceEEEEEEecCCCChhHHH
Q 002770 624 AVGTLEWVYERFQKQGDH----SDVQ-HLEHAVTHQSSELASPSNYSKSVVYVGREG----EGIIGAIAISDSLRHDAEH 694 (883)
Q Consensus 624 ~~Gs~~~i~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~----~~~lG~i~l~D~lr~~~~~ 694 (883)
.||++|.+..+|...... ..+. +..+.+ .+....+..+|.+++++++++ .+++|+++++|++|+++++
T Consensus 459 ~KGape~il~~c~~~~~~~g~~~~l~~~~~~~i---~~~~~~~a~~G~rvl~~A~~~~~~~l~~lGli~l~Dp~r~~~~~ 535 (884)
T TIGR01522 459 MKGAYEQVLKYCTYYQKKDGKTLTLTQQQRDVI---QEEAAEMASAGLRVIAFASGPEKGQLTFLGLVGINDPPRPGVKE 535 (884)
T ss_pred EeCChHHHHHhhhhhhhcCCCeeeCCHHHHHHH---HHHHHHHHhcCCEEEEEEEEcCCCCeEEEEEEeccCcchhHHHH
Confidence 899999999998653211 0111 111111 111223466899999999865 3699999999999999999
Q ss_pred HHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc-------------------------eEEEecCccchHHHHHHHhh
Q 002770 695 TVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE-------------------------YINSSLTPQQKSEVISTLQT 749 (883)
Q Consensus 695 ~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~-------------------------~v~~~~~p~~K~~~v~~l~~ 749 (883)
+|++||++|++++|+|||+..+|.++|+++||... .+|+|++|+||.++|+.||+
T Consensus 536 ~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~~iv~~lq~ 615 (884)
T TIGR01522 536 AVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKMKIVKALQK 615 (884)
T ss_pred HHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999631 59999999999999999999
Q ss_pred cCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 750 SGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVA 829 (883)
Q Consensus 750 ~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~ 829 (883)
.|+.|+|+|||.||+|||++|||||+|| .++++.++++||+++++|++..+++++++||++++||++|+.|.++.|+..
T Consensus 616 ~g~~v~mvGDGvND~pAl~~AdVGia~g-~~g~~va~~aaDivl~dd~~~~i~~~i~~gR~~~~ni~k~i~~~l~~ni~~ 694 (884)
T TIGR01522 616 RGDVVAMTGDGVNDAPALKLADIGVAMG-QTGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIKNFITFQLSTSVAA 694 (884)
T ss_pred CCCEEEEECCCcccHHHHHhCCeeEecC-CCcCHHHHHhcCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9999999999999999999999999993 268999999999999999999999999999999999999999999999877
Q ss_pred HHHHHhhhhcccCccccHHHHHHHhhhhhHHHHHhhhhccccccccc
Q 002770 830 IPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQFHEFESN 876 (883)
Q Consensus 830 i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~~nsl~l~~~~~~~~ 876 (883)
+.+.+... .++. ..|+.+..+..+.-+...+-++.|.+.+++.+
T Consensus 695 ~~~~~~~~--~~~~-~~pl~~~qiL~inl~~d~~~a~~l~~e~~~~~ 738 (884)
T TIGR01522 695 LSLIALAT--LMGF-PNPLNAMQILWINILMDGPPAQSLGVEPVDKD 738 (884)
T ss_pred HHHHHHHH--HHcC-CCchhHHHHHHHHHHHHhhHHHHhccCCCChh
Confidence 76644222 1332 35666667778888888888888887655443
No 17
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-80 Score=699.67 Aligned_cols=568 Identities=24% Similarity=0.336 Sum_probs=442.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEEC
Q 002770 278 FEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVL 357 (883)
Q Consensus 278 f~~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~ 357 (883)
|+++..|.+++.+.-.+-.+++.|+.+++++|+++.|+.++++| +|+.+.++++||+|||||.++
T Consensus 78 ~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~R---------------~gk~~~i~A~eLVPGDiV~l~ 142 (972)
T KOG0202|consen 78 FDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVLR---------------SGKLQHILARELVPGDIVELK 142 (972)
T ss_pred cccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEEe---------------cCcccceehhccCCCCEEEEe
Confidence 44555554444444445556666788899999999999999999 788999999999999999999
Q ss_pred CCCeeeeeEEEEeec-eEEeeccccCCCceeeccC--------------CCccccceeeecCcEEEEEEeecCccchhhh
Q 002770 358 PGETIPVDGRVLAGR-SVVDESMLSGESLPVFKEE--------------GFTVSAGTINWDGPLRIEACSTGSNSMISKI 422 (883)
Q Consensus 358 ~Ge~IPaDg~vl~G~-~~Vdes~LTGEs~pv~K~~--------------g~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i 422 (883)
-||+||||.++++-. ..||||.|||||.|+.|.. .+.+|+||.+..|.+++.|+.||.+|.+|+|
T Consensus 143 vGDkVPADlRl~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I 222 (972)
T KOG0202|consen 143 VGDKIPADLRLIEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKI 222 (972)
T ss_pred cCCccccceeEEeeeeeeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHH
Confidence 999999999999875 5699999999999999943 2358999999999999999999999999999
Q ss_pred hhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHH-HhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhc
Q 002770 423 VSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYY-IGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSC 501 (883)
Q Consensus 423 ~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~ 501 (883)
.++++..+..|+|+|+..|++...+..++.++.+.+ |.+ ++....| ...+.+.......|.+++++.+.++
T Consensus 223 ~~~m~~~e~~kTPLqk~ld~~G~qLs~~is~i~v~v---~~~nig~f~~p-----~~~g~~fk~~~~~f~IaVsLAVAAI 294 (972)
T KOG0202|consen 223 FKMMQATESPKTPLQKKLDEFGKQLSKVISFICVGV---WLLNIGHFLDP-----VHGGSWFKGALYYFKIAVSLAVAAI 294 (972)
T ss_pred HHHHhccCCCCCcHHHHHHHHHHHHHHHheehhhhH---HHhhhhhhccc-----cccccchhchhhhhhHHHHHHHHhc
Confidence 999999999999999999999999886555554444 333 2211111 1112233445567889999999999
Q ss_pred ccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccC---------------CC
Q 002770 502 PCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFV---------------YD 566 (883)
Q Consensus 502 P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~---------------~~ 566 (883)
|.+|+..+.++++.|+.+|+|++.++|+..++|+||.+++||+|||||||+|+|.+.+++..+ |+
T Consensus 295 PEGLPaVvT~tLALG~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~~~~~~~~~~f~~tg~ty~ 374 (972)
T KOG0202|consen 295 PEGLPAVVTTTLALGTRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIPDGGTATVDEFNPTGTTYS 374 (972)
T ss_pred cCCCcchhhhhHHHhHHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEecccccccccccccCCceeC
Confidence 999999999999999999999999999999999999999999999999999999999986531 10
Q ss_pred h------------------H---HHHHHHHH-----hhhc-------cCChHHHHHHHHHHhcCCCCCC--Cc-------
Q 002770 567 E------------------S---EILKIAAA-----VEKT-------ATHPIAKAIVNKAESLNLTSPI--TR------- 604 (883)
Q Consensus 567 ~------------------~---~~l~~~a~-----~e~~-------s~hPi~~Ai~~~~~~~~~~~~~--~~------- 604 (883)
+ + +++..++. +++. ...|.+.|+...+++.++.... ..
T Consensus 375 ~~g~v~~~~~~~~~~~~~~~~l~~l~~i~~lCNda~v~~~~~~~~~~~G~pTE~AL~vlaeKm~l~~~~~~~~s~~~~~~ 454 (972)
T KOG0202|consen 375 PEGEVFKDGLYEKDKAGDNDLLQELAEICALCNDATVEYNDADCYEKVGEPTEGALIVLAEKMGLPGTRSTNLSNEEASA 454 (972)
T ss_pred CCCceEecCccccccccccHHHHHHHHHHHhhhhhhhhcCchhhHHhcCCchHHHHHHHHHHcCCCcchhhccccccccc
Confidence 0 1 22222221 2211 4579999999999988765322 11
Q ss_pred -------------CcccccCceEEEEE-----C---CEEEEecCHHHHHHHhhccCCCch--hhhHHHHH-hhhcccccC
Q 002770 605 -------------GQLAEPGFGILGEV-----D---GRLVAVGTLEWVYERFQKQGDHSD--VQHLEHAV-THQSSELAS 660 (883)
Q Consensus 605 -------------~~~~~~g~g~~~~~-----~---g~~~~~Gs~~~i~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~ 660 (883)
+.+....+..++.. + ...+.||++|.++++|........ ...+.+.. ..+.++...
T Consensus 455 c~~~~~~~~~~~~elpFssdrK~Msv~c~~~~~~~~~~~fvKGA~E~Vl~rcs~~~~~~g~~~~pLt~~~re~il~~~~~ 534 (972)
T KOG0202|consen 455 CNRVYSRLFKKIAELPFSSDRKSMSVKCSPAHGQSGYKMFVKGAPESVLERCSTYYGSDGQTKVPLTQASRETILANVYE 534 (972)
T ss_pred chhHHHHhhhheeEeecccccceEEEEEecCCCCccceEEecCChHHHHHhhhcEEccCCceeeeCcHHHHHHHHHHHHH
Confidence 11111222222221 1 367899999999999954333221 01111111 111222334
Q ss_pred cCCCCCeEEEEEec-----------------------CceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHH
Q 002770 661 PSNYSKSVVYVGRE-----------------------GEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAV 717 (883)
Q Consensus 661 ~~~~g~~~~~~a~~-----------------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a 717 (883)
+...|.|++.+|.. ++.|+|++++.||+|++++++|+.|+++||+|+|+|||+..||
T Consensus 535 ~g~~gLRvLalA~~~~~~~~~~~~~l~~~s~~~~~E~~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA 614 (972)
T KOG0202|consen 535 MGSEGLRVLALASKDSPGQVPDDQDLNDTSNRATAESDLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETA 614 (972)
T ss_pred HhhccceEEEEEccCCcccChhhhhhcccccccccccceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHH
Confidence 56789999998874 5679999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCC-----------------------------ceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHH
Q 002770 718 AATAKEVGIGK-----------------------------EYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLA 768 (883)
Q Consensus 718 ~~ia~~~gi~~-----------------------------~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~ 768 (883)
.+||+++||.. ..+|+|++|++|.++|+.||+.|+.|+|.|||.||+||||
T Consensus 615 ~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P~HK~kIVeaLq~~geivAMTGDGVNDApALK 694 (972)
T KOG0202|consen 615 EAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAEPQHKLKIVEALQSRGEVVAMTGDGVNDAPALK 694 (972)
T ss_pred HHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecCchhHHHHHHHHHhcCCEEEecCCCccchhhhh
Confidence 99999999931 1689999999999999999999999999999999999999
Q ss_pred hCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcccCccccH
Q 002770 769 LADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAA-GALLPQYDFAMTP 847 (883)
Q Consensus 769 ~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~-~~~~~~~g~~l~P 847 (883)
.||+||||| .+|++.+|++||+||.+|||+.|..++++||++|+|||+++.|.+..|+..+.+-+ +.. +|++ .|
T Consensus 695 ~AdIGIAMG-~~GTdVaKeAsDMVL~DDnFstIvaAVEEGr~IynNik~Fir~~lSsnVgev~~I~l~aa---~~~p-~p 769 (972)
T KOG0202|consen 695 KADIGIAMG-ISGTDVAKEASDMVLADDNFSTIVAAVEEGRAIYNNIKNFIRYLLSSNVGEVVLIFLTAA---FGIP-EP 769 (972)
T ss_pred hcccceeec-CCccHhhHhhhhcEEecCcHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---hCCC-Cc
Confidence 999999993 39999999999999999999999999999999999999999999999984433321 111 3432 45
Q ss_pred HHHHHHhhhhhHHHHHhhhhcccccc
Q 002770 848 SLSGGLMALSSIFVVSNSLLLQFHEF 873 (883)
Q Consensus 848 ~~aa~~m~~ssl~v~~nsl~l~~~~~ 873 (883)
+.+..+.+..-+.-=.-|..|-+.++
T Consensus 770 L~pvQiLWiNlvtDG~PA~aLG~ep~ 795 (972)
T KOG0202|consen 770 LIPVQILWINLVTDGPPATALGFEPV 795 (972)
T ss_pred ccchhhheeeeeccCCchhhcCCCCC
Confidence 55556666655555555556665544
No 18
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=3.4e-78 Score=749.96 Aligned_cols=562 Identities=21% Similarity=0.276 Sum_probs=454.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEE
Q 002770 277 FFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLV 356 (883)
Q Consensus 277 ~f~~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v 356 (883)
++..++.+++++++.-.+..+++.|+.+.+++|.++.|.+++|+| ||++++|+++||+|||+|.|
T Consensus 103 ~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViR---------------dg~~~~I~~~~lv~GDiv~l 167 (997)
T TIGR01106 103 NLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIR---------------DGEKMSINAEQVVVGDLVEV 167 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEE---------------CCEEEEeeHHHCCCCCEEEE
Confidence 334455566677778888999999999999999999999999998 89999999999999999999
Q ss_pred CCCCeeeeeEEEEeec-eEEeeccccCCCceeeccCCC----------ccccceeeecCcEEEEEEeecCccchhhhhhh
Q 002770 357 LPGETIPVDGRVLAGR-SVVDESMLSGESLPVFKEEGF----------TVSAGTINWDGPLRIEACSTGSNSMISKIVSM 425 (883)
Q Consensus 357 ~~Ge~IPaDg~vl~G~-~~Vdes~LTGEs~pv~K~~g~----------~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~ 425 (883)
++||+|||||+|++|+ +.||||+|||||.|+.|.+++ .+|+||.+.+|.+.++|++||.+|.+|++.++
T Consensus 168 ~~Gd~IPaD~~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~ 247 (997)
T TIGR01106 168 KGGDRIPADLRIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASL 247 (997)
T ss_pred CCCCEEeeeEEEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhh
Confidence 9999999999999996 689999999999999998875 59999999999999999999999999999999
Q ss_pred hHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhccccc
Q 002770 426 VEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCAL 505 (883)
Q Consensus 426 v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL 505 (883)
+++++.+++|+|+.+++++.+++.++++++++.+++|++.+. .+...+.+++++++++|||+|
T Consensus 248 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~v~v~~iP~~L 310 (997)
T TIGR01106 248 ASGLENGKTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGY-----------------TWLEAVIFLIGIIVANVPEGL 310 (997)
T ss_pred hhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------------CHHHHHHHHHHHHhhcCCccc
Confidence 999888899999999999999999888888877776654331 234467788999999999999
Q ss_pred chhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccC---------------CCh---
Q 002770 506 GLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFV---------------YDE--- 567 (883)
Q Consensus 506 ~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~---------------~~~--- 567 (883)
++++++++..+..+++++|+++|+++++|+||++|+||||||||||+|+|+|.+++..+ ++.
T Consensus 311 ~~~v~i~l~~~~~~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (997)
T TIGR01106 311 LATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGVSFDKSSA 390 (997)
T ss_pred hHHHHHHHHHHHHHHHHCCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEECCeEEecCCccCCCCccCCcccH
Confidence 99999999999999999999999999999999999999999999999999999886321 010
Q ss_pred --HHHHHHHHHhhh----------------ccCChHHHHHHHHHHhcCCC-------CCCCcCcccccCceEEEE-E--C
Q 002770 568 --SEILKIAAAVEK----------------TATHPIAKAIVNKAESLNLT-------SPITRGQLAEPGFGILGE-V--D 619 (883)
Q Consensus 568 --~~~l~~~a~~e~----------------~s~hPi~~Ai~~~~~~~~~~-------~~~~~~~~~~~g~g~~~~-~--~ 619 (883)
+.++..++..+. ...+|.+.|+++++...+.. .+........+.+..+.. + +
T Consensus 391 ~~~~ll~~~alcn~~~~~~~~~~~~~~~~~~~gdp~E~ALl~~a~~~~~~~~~~~~~~~~v~~~pF~s~rK~m~~v~~~~ 470 (997)
T TIGR01106 391 TWLALSRIAGLCNRAVFKAGQENVPILKRAVAGDASESALLKCIELCLGSVMEMRERNPKVVEIPFNSTNKYQLSIHENE 470 (997)
T ss_pred HHHHHHHHHHHcCCCeeccccCCCcccccccCcChHHHHHHHHHHHhCCCHHHHHhhCceeEEeccCCCCceEEEEEecc
Confidence 134444433321 13579999999998754321 111112233334443322 1 1
Q ss_pred ----C--EEEEecCHHHHHHHhhccCCCchhhhHHHH-HhhhcccccCcCCCCCeEEEEEe-------------------
Q 002770 620 ----G--RLVAVGTLEWVYERFQKQGDHSDVQHLEHA-VTHQSSELASPSNYSKSVVYVGR------------------- 673 (883)
Q Consensus 620 ----g--~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~a~------------------- 673 (883)
+ ..+.||+++.++++|...........+.+. .+...+....+.++|.+++.+|+
T Consensus 471 ~~~~~~~~~~~KGApe~Il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~GlRvla~A~k~l~~~~~~~~~~~~~~~~ 550 (997)
T TIGR01106 471 DPRDPRHLLVMKGAPERILERCSSILIHGKEQPLDEELKEAFQNAYLELGGLGERVLGFCHLYLPDEQFPEGFQFDTDDV 550 (997)
T ss_pred CCCCceEEEEEeCChHHHHHHhhHHhcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEEeecCcccccccccccchhh
Confidence 1 357999999999999743211111111000 01111122234667888877764
Q ss_pred ----cCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--------------------
Q 002770 674 ----EGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE-------------------- 729 (883)
Q Consensus 674 ----~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~-------------------- 729 (883)
++++++|+++++||+|++++++|++|+++|++++|+|||+..+|.++|+++|+-.+
T Consensus 551 ~~~e~~L~flGli~i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~ 630 (997)
T TIGR01106 551 NFPTDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVN 630 (997)
T ss_pred hccccCcEEEEEEeccCCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccc
Confidence 24469999999999999999999999999999999999999999999999999310
Q ss_pred -------------------------------eEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeec
Q 002770 730 -------------------------------YINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQI 778 (883)
Q Consensus 730 -------------------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~ 778 (883)
.+|||++|+||.++|+.+|+.|+.|+|+|||.||+|||++||||||||
T Consensus 631 ~~~~~~~vi~G~~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg- 709 (997)
T TIGR01106 631 PRDAKACVVHGSDLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMG- 709 (997)
T ss_pred cccccceEEEhHHhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecC-
Confidence 299999999999999999999999999999999999999999999993
Q ss_pred CCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccHHHHHHHhhhhh
Q 002770 779 EAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSGGLMALSS 858 (883)
Q Consensus 779 ~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~~~~~~~~g~~l~P~~aa~~m~~ss 858 (883)
.+|++.++++||+++++|+|..+++++++||+++.|+++++.|.++.|+..+.+.+... .++. -.|+.+..++...-
T Consensus 710 ~~G~~vak~aADivL~dd~f~~Iv~ai~~GR~i~~ni~k~i~~~l~~ni~~~~~~~~~~--~~~~-~~pl~~~qlL~inl 786 (997)
T TIGR01106 710 IAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFI--IANI-PLPLGTITILCIDL 786 (997)
T ss_pred CcccHHHHHhhceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHcC-cchhHHHHHHHHHH
Confidence 26899999999999999999999999999999999999999999999987665544222 2332 24666667778888
Q ss_pred HHHHHhhhhccccccc
Q 002770 859 IFVVSNSLLLQFHEFE 874 (883)
Q Consensus 859 l~v~~nsl~l~~~~~~ 874 (883)
+...+-++.|.+.+++
T Consensus 787 i~d~lp~~al~~e~~~ 802 (997)
T TIGR01106 787 GTDMVPAISLAYEKAE 802 (997)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 8888888888775443
No 19
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=7.8e-78 Score=744.25 Aligned_cols=561 Identities=22% Similarity=0.286 Sum_probs=443.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCC
Q 002770 280 EPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPG 359 (883)
Q Consensus 280 ~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~G 359 (883)
.++++++++++.-.+..+++.|+.+++++|.++.+.+++|+| ||++++|+++||+|||+|.+++|
T Consensus 83 ~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~ViR---------------dg~~~~I~a~eLVpGDIv~L~~G 147 (1053)
T TIGR01523 83 EGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIR---------------NGKSDAIDSHDLVPGDICLLKTG 147 (1053)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEe---------------CCeeeecCHhhCCCCCEEEECCC
Confidence 456666777788888999999999999999999999999998 99999999999999999999999
Q ss_pred CeeeeeEEEEeec-eEEeeccccCCCceeeccCC---------------CccccceeeecCcEEEEEEeecCccchhhhh
Q 002770 360 ETIPVDGRVLAGR-SVVDESMLSGESLPVFKEEG---------------FTVSAGTINWDGPLRIEACSTGSNSMISKIV 423 (883)
Q Consensus 360 e~IPaDg~vl~G~-~~Vdes~LTGEs~pv~K~~g---------------~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~ 423 (883)
|+|||||+|++++ ..||||+|||||.||.|.+. +.+|+||.+.+|.++++|++||.+|.+|+|.
T Consensus 148 d~VPAD~rLi~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa 227 (1053)
T TIGR01523 148 DTIPADLRLIETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIA 227 (1053)
T ss_pred CEeeccEEEEEeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHH
Confidence 9999999999984 78999999999999999642 3589999999999999999999999999999
Q ss_pred hhhHhhhC-----------------------------------CCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcC
Q 002770 424 SMVEEAQG-----------------------------------REAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQ 468 (883)
Q Consensus 424 ~~v~~~~~-----------------------------------~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~ 468 (883)
+++.+.+. .++|+|+.+++++.++..+.++++++.+++..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~~~~~--- 304 (1053)
T TIGR01523 228 AGLQGDGGLFQRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAHKFD--- 304 (1053)
T ss_pred HHHhhhhhccccccccccccchhhhcccccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Confidence 98865431 2499999999999988777766666555432210
Q ss_pred cccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcc
Q 002770 469 IFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTG 548 (883)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTG 548 (883)
.+...+.++++++++++|.+|+..+.++++.+..+++|+++++|++.++|+||++++||+||||
T Consensus 305 ----------------~~~~~~~~av~l~Va~VPegLp~~vti~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTG 368 (1053)
T TIGR01523 305 ----------------VDKEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTG 368 (1053)
T ss_pred ----------------hhHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcC
Confidence 0123456789999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceEEEEEeccC------------CCh------------------------------------------------H
Q 002770 549 TLTEGKPAVFNVASFV------------YDE------------------------------------------------S 568 (883)
Q Consensus 549 TLT~~~~~v~~v~~~~------------~~~------------------------------------------------~ 568 (883)
|||+|+|+|.+++..+ +++ .
T Consensus 369 TLT~N~M~V~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (1053)
T TIGR01523 369 TITQGKMIARQIWIPRFGTISIDNSDDAFNPNEGNVSGIPRFSPYEYSHNEAADQDILKEFKDELKEIDLPEDIDMDLFI 448 (1053)
T ss_pred ccccceEEEEEEEEcCCceEEecCCCCCCCCcccccccccccccccccccccccccccccccccccccccccccccHHHH
Confidence 9999999999875321 000 1
Q ss_pred HHHHHHHHhh-------------hccCChHHHHHHHHHHhcCCCCC--------------------------------CC
Q 002770 569 EILKIAAAVE-------------KTATHPIAKAIVNKAESLNLTSP--------------------------------IT 603 (883)
Q Consensus 569 ~~l~~~a~~e-------------~~s~hPi~~Ai~~~~~~~~~~~~--------------------------------~~ 603 (883)
+++..++... ....+|.+.|++.++...+++.. ..
T Consensus 449 ~ll~~~~lcn~a~~~~~~~~~~~~~~GdptE~ALl~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1053)
T TIGR01523 449 KLLETAALANIATVFKDDATDCWKAHGDPTEIAIHVFAKKFDLPHNALTGEEDLLKSNENDQSSLSQHNEKPGSAQFEFI 528 (1053)
T ss_pred HHHHHHHhccCCeeeccCCCCceeeCcCccHHHHHHHHHHcCCCcccccchhhhhhhccccccccccccccccccccceE
Confidence 1333222221 11359999999999987765311 01
Q ss_pred cCcccccCceEEEEE---C-C---EEEEecCHHHHHHHhhccCCCc--hhhhHH-HHHhhhcccccCcCCCCCeEEEEEe
Q 002770 604 RGQLAEPGFGILGEV---D-G---RLVAVGTLEWVYERFQKQGDHS--DVQHLE-HAVTHQSSELASPSNYSKSVVYVGR 673 (883)
Q Consensus 604 ~~~~~~~g~g~~~~~---~-g---~~~~~Gs~~~i~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~a~ 673 (883)
..+...+.+..+..+ + + ..++||+|+.++++|....... ....+. +..+.+.+....++.+|.+++.+|+
T Consensus 529 ~~~pFds~rK~msvv~~~~~~~~~~~~~KGApe~il~~c~~~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~GlRvLa~A~ 608 (1053)
T TIGR01523 529 AEFPFDSEIKRMASIYEDNHGETYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDRELIIANMESLAAEGLRVLAFAS 608 (1053)
T ss_pred EEeccCCCCCeEEEEEEeCCCCEEEEEEeCChHHHHHhhhHhhcCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 112233334444433 1 2 3579999999999997532110 000010 0011111222335678888888875
Q ss_pred c------------------------CceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc
Q 002770 674 E------------------------GEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE 729 (883)
Q Consensus 674 ~------------------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~ 729 (883)
. +++++|+++++|++|++++++|++||++||+++|+|||+..+|.++|+++||...
T Consensus 609 r~l~~~~~~~~~~~~~~~~~~~~e~~L~~~G~~~~~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~ 688 (1053)
T TIGR01523 609 KSFDKADNNDDQLKNETLNRATAESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPP 688 (1053)
T ss_pred EECCchhccchhhhccccchhhhccCCEEEEEEeeecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCc
Confidence 1 4579999999999999999999999999999999999999999999999999532
Q ss_pred -----------------------------------eEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeE
Q 002770 730 -----------------------------------YINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGI 774 (883)
Q Consensus 730 -----------------------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgI 774 (883)
.+++|++|+||.++|+.||++|+.|+|+|||.||+|||++|||||
T Consensus 689 ~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGI 768 (1053)
T TIGR01523 689 NFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGI 768 (1053)
T ss_pred cccccccccccceeeehHHhhhcCHHHHHHHhhcCeEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccE
Confidence 389999999999999999999999999999999999999999999
Q ss_pred EeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccc-CccccHHHHHH
Q 002770 775 ALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAA-GALLPQY-DFAMTPSLSGG 852 (883)
Q Consensus 775 a~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~-~~~~~~~-g~~l~P~~aa~ 852 (883)
||+ .+|++.++++||+++.+|+|..|.+++++||+++++|++++.|.+..|+..+.+.+ +.++..+ |....|+.+..
T Consensus 769 Amg-~~gt~vak~aADivl~dd~f~~I~~~i~~gR~~~~ni~k~i~y~l~~ni~~i~~~~~~~~~~~~~g~~~~Pl~~~q 847 (1053)
T TIGR01523 769 AMG-INGSDVAKDASDIVLSDDNFASILNAIEEGRRMFDNIMKFVLHLLAENVAEAILLIIGLAFRDENGKSVFPLSPVE 847 (1053)
T ss_pred ecC-CCccHHHHHhcCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCCCcCchHHHH
Confidence 992 27899999999999999999999999999999999999999999999986555443 2222111 33234666666
Q ss_pred HhhhhhHHHHHhhhhcccccccc
Q 002770 853 LMALSSIFVVSNSLLLQFHEFES 875 (883)
Q Consensus 853 ~m~~ssl~v~~nsl~l~~~~~~~ 875 (883)
+....-+...+-++.|.+.+++.
T Consensus 848 iL~inli~d~~palaL~~e~~~~ 870 (1053)
T TIGR01523 848 ILWCIMITSCFPAMGLGLEKAAP 870 (1053)
T ss_pred HHHHHHHHHHHHHHhhccCCCCh
Confidence 67777777777888887754443
No 20
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-79 Score=753.08 Aligned_cols=540 Identities=28% Similarity=0.381 Sum_probs=442.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCCCeeeeeEEEEe
Q 002770 291 GRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLA 370 (883)
Q Consensus 291 g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~IPaDg~vl~ 370 (883)
.-.+...+..|+.+++++|+++.+.+++|+| ||++++|+++||+|||+|++++||+||||++|++
T Consensus 116 n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~R---------------~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~ 180 (917)
T COG0474 116 NALLGFVQEYRAEKALEALKKMSSPKAKVLR---------------DGKFVEIPASELVPGDIVLLEAGDVVPADLRLLE 180 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCceEEEe---------------CCcEEEecHHHCCCCcEEEECCCCccccceEEEE
Confidence 3344455666677788888888899999988 8999999999999999999999999999999999
Q ss_pred ece-EEeeccccCCCceeeccC--------------CCccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCCh
Q 002770 371 GRS-VVDESMLSGESLPVFKEE--------------GFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAP 435 (883)
Q Consensus 371 G~~-~Vdes~LTGEs~pv~K~~--------------g~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~ 435 (883)
++. .||||+|||||.|+.|.+ .+.+|+||.+.+|.+.+.|++||.+|.+|++.+++.......+|
T Consensus 181 ~~~l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~ 260 (917)
T COG0474 181 SSDLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTP 260 (917)
T ss_pred ecCceEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccccCCc
Confidence 987 899999999999999963 46789999999999999999999999999999999988788999
Q ss_pred hHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHH
Q 002770 436 IQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILV 515 (883)
Q Consensus 436 ~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~ 515 (883)
+|+.++++...++.+.+++++++++..++.+. ..+..++.+++++++.++|.+|+..+.++++.
T Consensus 261 l~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~v~l~va~IPegLp~~vti~la~ 324 (917)
T COG0474 261 LQRKLNKLGKFLLVLALVLGALVFVVGLFRGG----------------NGLLESFLTALALAVAAVPEGLPAVVTIALAL 324 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------ccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 99999999999999888888888777644322 11556789999999999999999999999999
Q ss_pred HHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccC-CCh-H-----------HHHH---HHHHhhh
Q 002770 516 GTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFV-YDE-S-----------EILK---IAAAVEK 579 (883)
Q Consensus 516 ~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~-~~~-~-----------~~l~---~~a~~e~ 579 (883)
+..+++|+++++|+++++|+||++|+||+|||||||+|+|+|.+++..+ ..+ + +++. ++.....
T Consensus 325 g~~~mak~~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lc~~~~~ 404 (917)
T COG0474 325 GAQRMAKDNAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKDIDDKDLKDSPALLRFLLAAALCNSVTP 404 (917)
T ss_pred HHHHHHhccchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeCCCcccccccccccchHHHHHHHHHHhcCcccc
Confidence 9999999999999999999999999999999999999999999998762 111 1 1222 1221122
Q ss_pred c------cCChHHHHHHHHHHhcCC--CCC-------CCcCcccccCceEEEEEC------CEEEEecCHHHHHHHhhcc
Q 002770 580 T------ATHPIAKAIVNKAESLNL--TSP-------ITRGQLAEPGFGILGEVD------GRLVAVGTLEWVYERFQKQ 638 (883)
Q Consensus 580 ~------s~hPi~~Ai~~~~~~~~~--~~~-------~~~~~~~~~g~g~~~~~~------g~~~~~Gs~~~i~~~~~~~ 638 (883)
. ..+|.+.||++++++.+. +.. ....+...+.+..++.+. ...++||+|+.+.++|...
T Consensus 405 ~~~~~~~~gdptE~Al~~~a~~~~~~~~~~~~~~~~~~~~~~PFdS~rKrMsviv~~~~~~~~~~~KGApe~il~~~~~~ 484 (917)
T COG0474 405 EKNGWYQAGDPTEGALVEFAEKLGFSLDLSGLEVEYPILAEIPFDSERKRMSVIVKTDEGKYILFVKGAPEVILERCKSI 484 (917)
T ss_pred cccCceecCCccHHHHHHHHHhcCCcCCHHHHhhhcceeEEecCCCCceEEEEEEEcCCCcEEEEEcCChHHHHHHhccc
Confidence 2 579999999999998776 311 123344555565555542 2467999999999998753
Q ss_pred CC-----CchhhhHHHHHhhhcccccCcCCCCCeEEEEEe----------------cCceEEEEEEecCCCChhHHHHHH
Q 002770 639 GD-----HSDVQHLEHAVTHQSSELASPSNYSKSVVYVGR----------------EGEGIIGAIAISDSLRHDAEHTVR 697 (883)
Q Consensus 639 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~----------------~~~~~lG~i~l~D~lr~~~~~~i~ 697 (883)
.. .++.+.+....++ +.++|++++.+++ +++.++|+++++||+|++++++|+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~-------la~~glRvla~A~k~~~~~~~~~~~~~~E~dl~~lGl~g~~Dppr~~v~~aI~ 557 (917)
T COG0474 485 GELEPLTEEGLRTLEEAVKE-------LASEGLRVLAVAYKKLDRAEKDDEVDEIESDLVFLGLTGIEDPPREDVKEAIE 557 (917)
T ss_pred CcccccCHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCCcccccchhhhhhccceeehhhhccCCCCccHHHHHH
Confidence 11 1112222222222 2223333333222 245799999999999999999999
Q ss_pred HHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc---------------------------eEEEecCccchHHHHHHHhhc
Q 002770 698 SLQQKGIKTLLLSGDREEAVAATAKEVGIGKE---------------------------YINSSLTPQQKSEVISTLQTS 750 (883)
Q Consensus 698 ~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~---------------------------~v~~~~~p~~K~~~v~~l~~~ 750 (883)
.|+++||+++|+|||+..||.+||+++|+..+ .+|||++|+||.++|+.||+.
T Consensus 558 ~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~qK~~IV~~lq~~ 637 (917)
T COG0474 558 ELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQKARIVEALQKS 637 (917)
T ss_pred HHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998322 489999999999999999999
Q ss_pred CCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 751 GHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAI 830 (883)
Q Consensus 751 g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i 830 (883)
|+.|+|+|||.||+|||++|||||||+ ++|+|+++++||+++.++++..+..++++||++|.|+++.+.+.+..|+..+
T Consensus 638 g~vVamtGDGvNDapALk~ADVGIamg-~~Gtdaak~Aadivl~dd~~~~i~~av~eGR~~~~ni~k~i~~~l~~n~~~~ 716 (917)
T COG0474 638 GHVVAMTGDGVNDAPALKAADVGIAMG-GEGTDAAKEAADIVLLDDNFATIVLAVVEGRRVYVNIKKFILYLLSKNVGEV 716 (917)
T ss_pred CCEEEEeCCCchhHHHHHhcCccEEec-ccHHHHHHhhcceEeecCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999994 4799999999999999999999999999999999999999999999999744
Q ss_pred HHHH-hhhhcccCccccHHHHHHHhhhhhHHHHHhhhhccccc
Q 002770 831 PIAA-GALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQFHE 872 (883)
Q Consensus 831 ~la~-~~~~~~~g~~l~P~~aa~~m~~ssl~v~~nsl~l~~~~ 872 (883)
.+.+ +.+ ++....|+.+-.++...-+...+.++.|...+
T Consensus 717 ~~~~~~~~---~~~~~~p~~~~qll~inll~d~~pa~~L~~~~ 756 (917)
T COG0474 717 LTLLIYSL---FNLFFLPLTPLQLLWINLLTDSLPALALGVED 756 (917)
T ss_pred HHHHHHHH---HhcccccHHHHHHHHHHHHHhhhhhheeecCC
Confidence 4433 322 22224577777888888888888888887664
No 21
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=100.00 E-value=1.7e-78 Score=707.98 Aligned_cols=477 Identities=35% Similarity=0.510 Sum_probs=428.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc--ccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCCCee
Q 002770 285 LGFVLLGRSLEERARIRASSDMNELLS--LVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETI 362 (883)
Q Consensus 285 l~~~~~g~~le~~~~~ra~~~~~~l~~--~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~I 362 (883)
+++++++.+++.+++.++.+.+++|.+ +.|+++++++ +| +++|++++|+|||+|.+++||+|
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r---------------~g-~~~V~~~~l~~GDiv~v~~G~~i 66 (499)
T TIGR01494 3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLR---------------NG-WKEIPASDLVPGDIVLVKSGEIV 66 (499)
T ss_pred EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEE---------------CC-eEEEEHHHCCCCCEEEECCCCEe
Confidence 446788999999999999999999998 8899999988 67 89999999999999999999999
Q ss_pred eeeEEEEeeceEEeeccccCCCceeeccCCCccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHH
Q 002770 363 PVDGRVLAGRSVVDESMLSGESLPVFKEEGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADA 442 (883)
Q Consensus 363 PaDg~vl~G~~~Vdes~LTGEs~pv~K~~g~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~ 442 (883)
||||+|++|++.||||+|||||.|+.|.+|+.+++||.+.+|.++++|+++|.+|..+++...++.++..++++|+..++
T Consensus 67 P~Dg~vl~g~~~vdes~LTGEs~pv~k~~g~~v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~ 146 (499)
T TIGR01494 67 PADGVLLSGSCFVDESNLTGESVPVLKTAGDAVFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDR 146 (499)
T ss_pred eeeEEEEEccEEEEcccccCCCCCeeeccCCccccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred hc-hhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHH
Q 002770 443 IA-GPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGA 521 (883)
Q Consensus 443 ~~-~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a 521 (883)
+. .+|++++++++++++++|++.... ...+..++.+++++++++|||+|++++|+++..+..+++
T Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~~~--------------~~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~ 212 (499)
T TIGR01494 147 LSDIIFILFVLLIALAVFLFWAIGLWD--------------PNSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLA 212 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc--------------cccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 99 899999999999888888654311 002456789999999999999999999999999999999
Q ss_pred hcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccCCChHHHHHHHHHhhhccCChHHHHHHHHHHhcCCCCC
Q 002770 522 KQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTATHPIAKAIVNKAESLNLTSP 601 (883)
Q Consensus 522 ~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~~~~~~~l~~~a~~e~~s~hPi~~Ai~~~~~~~~~~~~ 601 (883)
++|+++|+++++|+||++|++|||||||||+|+|++.++...+. ++.+.||+++|++++++.....
T Consensus 213 ~~gilvk~~~~lE~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~------------~~~s~hp~~~ai~~~~~~~~~~-- 278 (499)
T TIGR01494 213 KKGIVVRSLNALEELGKVDYICSDKTGTLTKNEMSFKKVSVLGG------------EYLSGHPDERALVKSAKWKILN-- 278 (499)
T ss_pred HCCcEEechhhhhhccCCcEEEeeCCCccccCceEEEEEEecCC------------CcCCCChHHHHHHHHhhhcCcc--
Confidence 99999999999999999999999999999999999999875431 5678999999999998754321
Q ss_pred CCcCcccccCceEEEEECC--EEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEEecCceEE
Q 002770 602 ITRGQLAEPGFGILGEVDG--RLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGREGEGII 679 (883)
Q Consensus 602 ~~~~~~~~~g~g~~~~~~g--~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~l 679 (883)
..++...+ +|+.+.+++ +.+.+|+++++.++|.. ..+... .+...|.+++++++++. ++
T Consensus 279 -~~~f~~~~-~~~~~~~~~~~~~~~~G~~~~i~~~~~~---------~~~~~~-------~~~~~g~~~~~~a~~~~-~~ 339 (499)
T TIGR01494 279 -VFEFSSVR-KRMSVIVRGPDGTYVKGAPEFVLSRVKD---------LEEKVK-------ELAQSGLRVLAVASKET-LL 339 (499)
T ss_pred -eeccCCCC-ceEEEEEecCCcEEEeCCHHHHHHhhHH---------HHHHHH-------HHHhCCCEEEEEEECCe-EE
Confidence 23444445 577777654 67999999999987642 111111 12347889999999887 99
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcC
Q 002770 680 GAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGD 759 (883)
Q Consensus 680 G~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGD 759 (883)
|++.++|++|++++++|+.|+++|++++|+|||+..++..+|+++|| +++++|++|.++|+.+|+.|+.|+|+||
T Consensus 340 g~i~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi-----~~~~~p~~K~~~v~~l~~~g~~v~~vGD 414 (499)
T TIGR01494 340 GLLGLEDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI-----FARVTPEEKAALVEALQKKGRVVAMTGD 414 (499)
T ss_pred EEEEecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc-----eeccCHHHHHHHHHHHHHCCCEEEEECC
Confidence 99999999999999999999999999999999999999999999997 7899999999999999999999999999
Q ss_pred CccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002770 760 GINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGA 836 (883)
Q Consensus 760 g~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~~~ 836 (883)
|.||+|||+.|||||+| + ++++||++++++++..++.++++||+++++++||+.|++.||++.+|+++++
T Consensus 415 g~nD~~al~~Advgia~--~-----a~~~adivl~~~~l~~i~~~~~~~r~~~~~i~~~~~~~~~~n~~~~~~a~~~ 484 (499)
T TIGR01494 415 GVNDAPALKKADVGIAM--G-----AKAAADIVLLDDNLSTIVDALKEGRKTFSTIKSNIFWAIAYNLILIPLAALL 484 (499)
T ss_pred ChhhHHHHHhCCCcccc--c-----hHHhCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 4 6889999999999999999999999999999999999999999999999754
No 22
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=4.6e-77 Score=735.32 Aligned_cols=572 Identities=22% Similarity=0.291 Sum_probs=453.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEE
Q 002770 276 SFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVL 355 (883)
Q Consensus 276 ~~f~~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~ 355 (883)
.|++ +.++++++++.-.+..+++.|+.+.+++|.++.|.+++|+| ||++++|+++||+|||+|.
T Consensus 35 ~~~~-~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViR---------------dg~~~~I~~~~Lv~GDiv~ 98 (917)
T TIGR01116 35 AFVE-PFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVLR---------------DGRWSVIKAKDLVPGDIVE 98 (917)
T ss_pred cHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEE---------------CCEEEEEEHHHCCCCCEEE
Confidence 3444 55556667778888999999999999999999999999998 8999999999999999999
Q ss_pred ECCCCeeeeeEEEEeec-eEEeeccccCCCceeeccCC-------------CccccceeeecCcEEEEEEeecCccchhh
Q 002770 356 VLPGETIPVDGRVLAGR-SVVDESMLSGESLPVFKEEG-------------FTVSAGTINWDGPLRIEACSTGSNSMISK 421 (883)
Q Consensus 356 v~~Ge~IPaDg~vl~G~-~~Vdes~LTGEs~pv~K~~g-------------~~v~aGt~~~~G~~~~~v~~~g~~T~~~~ 421 (883)
+++||+|||||+|++|+ +.||||+|||||.|+.|.++ +.+|+||.+.+|.++++|++||.+|.+|+
T Consensus 99 l~~Gd~IPaD~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gk 178 (917)
T TIGR01116 99 LAVGDKVPADIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGK 178 (917)
T ss_pred ECCCCEeeccEEEEEecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHH
Confidence 99999999999999995 89999999999999999876 77999999999999999999999999999
Q ss_pred hhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhc
Q 002770 422 IVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSC 501 (883)
Q Consensus 422 i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~ 501 (883)
|.+++.+++.+++|+|+.+++++.+++++++++++++++++...... +. ....+...+...+..++++++++|
T Consensus 179 i~~~~~~~~~~~t~lq~~l~~~~~~l~~~~~~~~~i~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~i~l~v~~i 251 (917)
T TIGR01116 179 IRDEMRAAEQEDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFND--PA-----LGGGWIQGAIYYFKIAVALAVAAI 251 (917)
T ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cc-----ccchhHHHHHHHHHHHHhhhhhcc
Confidence 99999998899999999999999999887777777666554321110 00 000111223445667889999999
Q ss_pred ccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccC---------------CC
Q 002770 502 PCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFV---------------YD 566 (883)
Q Consensus 502 P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~---------------~~ 566 (883)
||+|+++++++++.+..+++++|+++|+++++|+||++|+||||||||||+|+|+|.+++..+ ++
T Consensus 252 P~~Lp~~vti~l~~~~~~m~~~~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~ 331 (917)
T TIGR01116 252 PEGLPAVITTCLALGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVALDPSSSSLNEFCVTGTTYA 331 (917)
T ss_pred ccccHHHHHHHHHHHHHHHHHCCcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEecCCcccccceEEecCCccC
Confidence 999999999999999999999999999999999999999999999999999999999886421 10
Q ss_pred h-------------------HHHHHHHHHhhh-------------ccCChHHHHHHHHHHhcCCCCCCC-----------
Q 002770 567 E-------------------SEILKIAAAVEK-------------TATHPIAKAIVNKAESLNLTSPIT----------- 603 (883)
Q Consensus 567 ~-------------------~~~l~~~a~~e~-------------~s~hPi~~Ai~~~~~~~~~~~~~~----------- 603 (883)
+ ++++..++.... ...+|.+.|+++++++.+++....
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~lc~~~~~~~~~~~~~~~~~gdp~E~ALl~~~~~~g~~~~~~~~~~~~~~~~~ 411 (917)
T TIGR01116 332 PEGGVIKDDGPVAGGQDAGLEELATIAALCNDSSLDFNERKGVYEKVGEATEAALKVLVEKMGLPATKNGVSSKRRPALG 411 (917)
T ss_pred CCccccccCCcccccchHHHHHHHHHHHhcCCCeeeccccCCceeeccChhHHHHHHHHHHcCCCchhcccccccccccc
Confidence 0 112222221110 135999999999988776542211
Q ss_pred ------------cCcccccCceEEEEE-C----CEEEEecCHHHHHHHhhccCCC-chhhhHH-HHHhhhcccccCcCC-
Q 002770 604 ------------RGQLAEPGFGILGEV-D----GRLVAVGTLEWVYERFQKQGDH-SDVQHLE-HAVTHQSSELASPSN- 663 (883)
Q Consensus 604 ------------~~~~~~~g~g~~~~~-~----g~~~~~Gs~~~i~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~- 663 (883)
..+...+.+..+..+ + ...+.||+++.++++|...... .....+. +..+...+....++.
T Consensus 412 ~~~~~~~~~~~~~~~pF~s~rK~msviv~~~~~~~~~~KGApe~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~ 491 (917)
T TIGR01116 412 CNSVWNDKFKKLATLEFSRDRKSMSVLCKPSTGNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMKNTILSVIKEMGTT 491 (917)
T ss_pred hhHHHHhhcceeeecccChhhCeEEEEEeeCCcEEEEEcCChHHHHHhccceecCCCCeeeCCHHHHHHHHHHHHHHHhh
Confidence 111222333333333 2 2568899999999999753221 1000000 001111122233566
Q ss_pred CCCeEEEEEec----------------------CceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH
Q 002770 664 YSKSVVYVGRE----------------------GEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATA 721 (883)
Q Consensus 664 ~g~~~~~~a~~----------------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia 721 (883)
+|.+++.+|+. +.+++|+++++|++|++++++|++||++|++++|+|||+..+|.++|
T Consensus 492 ~GlRvl~~A~k~~~~~~~~~~~~~~~~~~~~e~~l~~lGl~~~~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia 571 (917)
T TIGR01116 492 KALRCLALAFKDIPDPREEDLLSDPANFEAIESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAIC 571 (917)
T ss_pred cCCeEEEEEEEECCccccccccccchhhhhhcCCcEEEEEeeeeCCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHH
Confidence 78888888742 34689999999999999999999999999999999999999999999
Q ss_pred HHcCCCC-----------------------------ceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCe
Q 002770 722 KEVGIGK-----------------------------EYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADV 772 (883)
Q Consensus 722 ~~~gi~~-----------------------------~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~Adv 772 (883)
+++|+.. ..+++|++|+||.++|+.+|+.|+.|+|+|||.||+|||++|||
T Consensus 572 ~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdV 651 (917)
T TIGR01116 572 RRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADI 651 (917)
T ss_pred HHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCe
Confidence 9999953 14899999999999999999999999999999999999999999
Q ss_pred eEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccHHHHHH
Q 002770 773 GIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSGG 852 (883)
Q Consensus 773 gIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~~~~~~~~g~~l~P~~aa~ 852 (883)
||+| ++|++.++++||+++.+|++..+.+++++||++++|+++++.|.+..|+..+.+.+...+ +|+ -.|+.+..
T Consensus 652 Gia~--g~g~~~ak~aAD~vl~dd~f~~i~~~i~~GR~~~~ni~k~i~~~l~~ni~~~~~~~~~~~--~~~-~~pl~~~q 726 (917)
T TIGR01116 652 GIAM--GSGTEVAKEASDMVLADDNFATIVAAVEEGRAIYNNMKQFIRYMISSNIGEVVCIFLTAA--LGI-PEGLIPVQ 726 (917)
T ss_pred eEEC--CCCcHHHHHhcCeEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HcC-CchHHHHH
Confidence 9999 688999999999999999999999999999999999999999999999865555442211 232 24666666
Q ss_pred HhhhhhHHHHHhhhhcccccccc
Q 002770 853 LMALSSIFVVSNSLLLQFHEFES 875 (883)
Q Consensus 853 ~m~~ssl~v~~nsl~l~~~~~~~ 875 (883)
+...+-+...+-++.|.+.++++
T Consensus 727 ll~inli~d~lp~~~l~~~~~~~ 749 (917)
T TIGR01116 727 LLWVNLVTDGLPATALGFNPPDK 749 (917)
T ss_pred HHHHHHHHHHHHHHHHhcCCcch
Confidence 67777777778887776655543
No 23
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-79 Score=685.27 Aligned_cols=597 Identities=21% Similarity=0.261 Sum_probs=464.4
Q ss_pred HHHHHHHHHHHHHHHccCCccCccchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCC
Q 002770 253 FGSIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVL--LGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSA 330 (883)
Q Consensus 253 l~~~~a~~~s~~~~~~~~~~~~~~~f~~~~~ll~~~~--~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~ 330 (883)
++++.++.+|++. + ++...|++.+++++.+++ +-.++.+|.+.+.-+.+++..+ ..+..|+|
T Consensus 163 vaAvvSl~lgi~~---~--g~~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L~~~k~--~~k~~ViR--------- 226 (1034)
T KOG0204|consen 163 VAAVVSLGLGIYT---P--GIEDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKLQKEKR--NIKFQVIR--------- 226 (1034)
T ss_pred HHHHHHHhhhhcc---C--CCCcccccchhheeeEEEEEEEeecchhHHhhhhhhhhhhhh--ceEEEEEE---------
Confidence 4445555555443 2 233567787776554332 2345555555554444443221 23344555
Q ss_pred CccccCCCeEEEeeCCCcCCCCEEEECCCCeeeeeEEEEeec-eEEeeccccCCCceeeccC--CCccccceeeecCcEE
Q 002770 331 DNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGR-SVVDESMLSGESLPVFKEE--GFTVSAGTINWDGPLR 407 (883)
Q Consensus 331 ~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~IPaDg~vl~G~-~~Vdes~LTGEs~pv~K~~--g~~v~aGt~~~~G~~~ 407 (883)
||+.++|++.||++|||+.++.||.+||||++++|+ +.+|||++||||.++.|.+ +..+++||.+.+|.++
T Consensus 227 ------~G~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~~dPfLlSGTkv~eGsgk 300 (1034)
T KOG0204|consen 227 ------GGRRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLDKDPFLLSGTKVMEGSGK 300 (1034)
T ss_pred ------CCEEEEEEEeeeeeccEEEeecCCccccceEEEeccceeEecccccCCCcceeccCCCCCeEeecceeecCcce
Confidence 999999999999999999999999999999999996 6799999999999999976 5679999999999999
Q ss_pred EEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHh---cCcccchhccccCCCCCc
Q 002770 408 IEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIG---SQIFPDVLLSDMAGPNGN 484 (883)
Q Consensus 408 ~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 484 (883)
+.|+.+|.+|+.|+++..+......++|+|-.+++++..+..+.++++.+++++..... ......-...........
T Consensus 301 MlVTaVGmnt~wG~~m~~l~~~~~e~tpLQ~kL~~lA~~Igk~Gl~~A~~~~~VL~~r~~~~~~~~~~~~~~~~~~~~~~ 380 (1034)
T KOG0204|consen 301 MLVTAVGMNTQWGIIMTLLGAGGEEETPLQVKLNGLATQIGKIGLLFAALTFIVLVIRFFIGKTKIEGGTGTTWSDEYIQ 380 (1034)
T ss_pred EEEEEeeecchHhhHHHhhhcCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCccccHHHHH
Confidence 99999999999999999999988899999999999999998888888888877643322 110000000000000123
Q ss_pred hHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccC
Q 002770 485 PLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFV 564 (883)
Q Consensus 485 ~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~ 564 (883)
.+...|..+++++++|+|++|+||+.+++++++++|.+.+.++|+.+++|++|..++||.|||||||.|+|+|...+...
T Consensus 381 ~~v~~f~i~VTilVVAVPEGLPLAVTLsLAys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKTGTLT~N~MtVV~~~~~~ 460 (1034)
T KOG0204|consen 381 EFVKFFIIAVTILVVAVPEGLPLAVTLSLAYSMKKMMKDNNLVRHLDACETMGSATAICSDKTGTLTTNRMTVVQSYIGS 460 (1034)
T ss_pred HHHHHhhheeEEEEEECCCCccHHHHHHHHHHHHHHhcchhHHHHhHHHhhcCCceEEEecCcCceEeeeEEEEeeeecc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999875431
Q ss_pred --CC---------hH---HHHHHHHHh---------------hhccCChHHHHHHHHHHhcCCCCCCCcC-------ccc
Q 002770 565 --YD---------ES---EILKIAAAV---------------EKTATHPIAKAIVNKAESLNLTSPITRG-------QLA 608 (883)
Q Consensus 565 --~~---------~~---~~l~~~a~~---------------e~~s~hPi~~Ai~~~~~~~~~~~~~~~~-------~~~ 608 (883)
+. +. +++-...+. .+...+|.++||+.+....|.++..... +..
T Consensus 461 ~~~k~~~~~~~~l~~~~~~ll~~gI~~Nt~g~v~~~~~~g~~~~~~GspTE~AlL~f~~~LG~~~~~~R~e~~v~kv~~F 540 (1034)
T KOG0204|consen 461 EHYKVNSPKSSNLPPSLLDLLLQGIAQNTTGSVVKPEKGGEQPEQLGSPTECALLGFGLKLGMDFQDVRPEEKVVKVYPF 540 (1034)
T ss_pred ccccccCcccccCCHHHHHHHHHHHhhcCCCeEEecCCCCcCccccCCHHHHHHHHHHHHhCcchHhhcchhheeEEecc
Confidence 11 11 222222222 1335689999999999888776443221 112
Q ss_pred ccCceEEEEE-----CCE-EEEecCHHHHHHHhhccCCCc-hhhhHHHH-HhhhcccccCcCCCCCeEEEEEe-------
Q 002770 609 EPGFGILGEV-----DGR-LVAVGTLEWVYERFQKQGDHS-DVQHLEHA-VTHQSSELASPSNYSKSVVYVGR------- 673 (883)
Q Consensus 609 ~~g~g~~~~~-----~g~-~~~~Gs~~~i~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~a~------- 673 (883)
.+.+...+.+ +++ .++||+.|.++.+|....+.. ....+.+. .......++.++.++.+++++|+
T Consensus 541 NS~kK~~gvvi~~~~~~~y~~~KGAsEiVL~~C~~~~~~~g~~~~~~e~~~~~~~~~Ie~mA~~~LRti~lAy~df~~~~ 620 (1034)
T KOG0204|consen 541 NSVKKRMGVVIKLPDGGHYVHWKGASEIVLKSCEYYIDSNGELVPFNEDDRKSFKDVIEPMASEGLRTICLAYRDFVAGP 620 (1034)
T ss_pred CcccceeeEEEEcCCCCeEEEEcChHHHHHHhhhheECCCCCEeeCCHHHHHHHHHHHHHHHHhhhheeeEEeeccccCC
Confidence 2222222222 333 889999999999998755422 11111111 11122334456778888888887
Q ss_pred -------------cCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC-------------
Q 002770 674 -------------EGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIG------------- 727 (883)
Q Consensus 674 -------------~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~------------- 727 (883)
+|.+++|+++++||+|||++++|+.||++|++|.|+||||..||++||.+|||-
T Consensus 621 ~~~~~~~~~~~~~~~lt~laivGIkDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG~e 700 (1034)
T KOG0204|consen 621 DEEPSWDNEELPEGGLTLLAIVGIKDPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEGKE 700 (1034)
T ss_pred CCCCCccccccCCCCeEEEEEeeccCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecchh
Confidence 134689999999999999999999999999999999999999999999999992
Q ss_pred --------------CceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEE
Q 002770 728 --------------KEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIIL 793 (883)
Q Consensus 728 --------------~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl 793 (883)
+-.|.||-+|.||..+|+.|+++|+.|+..|||+||+|||+.||||.||| -.|++.|||++|+++
T Consensus 701 Fr~~s~ee~~~i~pkl~VlARSSP~DK~lLVk~L~~~g~VVAVTGDGTNDaPALkeADVGlAMG-IaGTeVAKEaSDIIi 779 (1034)
T KOG0204|consen 701 FRELSQEERDKIWPKLRVLARSSPNDKHLLVKGLIKQGEVVAVTGDGTNDAPALKEADVGLAMG-IAGTEVAKEASDIII 779 (1034)
T ss_pred hhhcCHHHHHhhhhhheeeecCCCchHHHHHHHHHhcCcEEEEecCCCCCchhhhhcccchhcc-ccchhhhhhhCCeEE
Confidence 12689999999999999999999999999999999999999999999995 379999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccHHHHHHHhhhhhHHHHHhhhhcccccc
Q 002770 794 LGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQFHEF 873 (883)
Q Consensus 794 ~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~~nsl~l~~~~~ 873 (883)
++|||+.|+.++.|||..|.+|+++++|.++.|++++.+++..-.. .| =.|+-|..+.+..-|+-.+-||.|..++|
T Consensus 780 ~DDNFssIVk~v~WGR~VY~nIqKFiQFQLTVNVvAliv~fv~A~~-~~--dsPLtAVQlLWVNLIMDTLgALALATepP 856 (1034)
T KOG0204|consen 780 LDDNFSSIVKAVKWGRNVYDNIQKFLQFQLTVNVVALIVNFVSACA-TG--DSPLTAVQLLWVNLIMDTLGALALATEPP 856 (1034)
T ss_pred EcCchHHHHHHHHhhhHHHHHHHHhheeEEEEEEEeehhhhhhhhh-cC--CccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999999888887633221 23 37999999999999999999999998766
Q ss_pred cc
Q 002770 874 ES 875 (883)
Q Consensus 874 ~~ 875 (883)
.+
T Consensus 857 t~ 858 (1034)
T KOG0204|consen 857 TD 858 (1034)
T ss_pred Ch
Confidence 44
No 24
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=3.1e-74 Score=719.03 Aligned_cols=546 Identities=20% Similarity=0.253 Sum_probs=427.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEE
Q 002770 277 FFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLV 356 (883)
Q Consensus 277 ~f~~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v 356 (883)
|+..++++++++++...+..++++|+.+.++++.. .+..++|+| ||++++|+++||+|||+|.|
T Consensus 192 ~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~R---------------dg~~~~I~s~eLvpGDiv~l 255 (1054)
T TIGR01657 192 YYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVIR---------------NGKWVTIASDELVPGDIVSI 255 (1054)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEEE---------------CCEEEEEEcccCCCCCEEEE
Confidence 34456666777788889999999998888888654 467888888 89999999999999999999
Q ss_pred C--CCCeeeeeEEEEeeceEEeeccccCCCceeeccCC------C------------ccccceeeec-------CcEEEE
Q 002770 357 L--PGETIPVDGRVLAGRSVVDESMLSGESLPVFKEEG------F------------TVSAGTINWD-------GPLRIE 409 (883)
Q Consensus 357 ~--~Ge~IPaDg~vl~G~~~Vdes~LTGEs~pv~K~~g------~------------~v~aGt~~~~-------G~~~~~ 409 (883)
+ +|++|||||+|++|++.||||+|||||.|+.|.+. + .+|+||.+.+ |.+.++
T Consensus 256 ~~~~g~~iPaD~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~v 335 (1054)
T TIGR01657 256 PRPEEKTMPCDSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAI 335 (1054)
T ss_pred ecCCCCEecceEEEEeCcEEEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEE
Confidence 9 99999999999999999999999999999999762 1 3999999984 889999
Q ss_pred EEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHH
Q 002770 410 ACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLS 489 (883)
Q Consensus 410 v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (883)
|++||.+|..|++++.+...+..++++++.+.++...++ +++++.++++++.+.. .+.++...
T Consensus 336 V~~TG~~T~~G~i~~~i~~~~~~~~~~~~~~~~~~~~l~----~~a~i~~i~~~~~~~~-------------~~~~~~~~ 398 (1054)
T TIGR01657 336 VVRTGFSTSKGQLVRSILYPKPRVFKFYKDSFKFILFLA----VLALIGFIYTIIELIK-------------DGRPLGKI 398 (1054)
T ss_pred EEeCCccccchHHHHHhhCCCCCCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-------------cCCcHHHH
Confidence 999999999999999998888888888887766644433 3333333332222110 12345567
Q ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccCCC---
Q 002770 490 LKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYD--- 566 (883)
Q Consensus 490 l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~~~--- 566 (883)
+.++++++++++|++|++++++++..++.+++|+||+||++.++|.+|++|++|||||||||+|+|+|.+++..+..
T Consensus 399 ~l~~l~iiv~~vP~~LP~~~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~~~~~~ 478 (1054)
T TIGR01657 399 ILRSLDIITIVVPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLSGNQEF 478 (1054)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEecccCcccc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999998753210
Q ss_pred -----------hHHHHHHHHHhh-------hccCChHHHHHHHHHHhcC-------CCC---------------CCCcCc
Q 002770 567 -----------ESEILKIAAAVE-------KTATHPIAKAIVNKAESLN-------LTS---------------PITRGQ 606 (883)
Q Consensus 567 -----------~~~~l~~~a~~e-------~~s~hPi~~Ai~~~~~~~~-------~~~---------------~~~~~~ 606 (883)
...++...+... ....+|++.|+++++.... ... .....+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~a~C~~~~~~~~~~~Gdp~E~al~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~il~~~ 558 (1054)
T TIGR01657 479 LKIVTEDSSLKPSITHKALATCHSLTKLEGKLVGDPLDKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQELSIIRRF 558 (1054)
T ss_pred ccccccccccCchHHHHHHHhCCeeEEECCEEecCHHHHHHHHhCCCEEECCCCcccccccccceeccCCCceEEEEEEE
Confidence 011222222211 2357999999999763210 000 000111
Q ss_pred ccccCceEEEEE---C--C--EEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEEec-----
Q 002770 607 LAEPGFGILGEV---D--G--RLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGRE----- 674 (883)
Q Consensus 607 ~~~~g~g~~~~~---~--g--~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~----- 674 (883)
...+.+..+..+ + + ..++||+||.+.++|.....+++..+ ... .+..+|.+++.+|+.
T Consensus 559 pF~S~~krMsvvv~~~~~~~~~~~~KGApE~Il~~c~~~~~p~~~~~---~~~-------~~a~~G~RVLalA~k~l~~~ 628 (1054)
T TIGR01657 559 QFSSALQRMSVIVSTNDERSPDAFVKGAPETIQSLCSPETVPSDYQE---VLK-------SYTREGYRVLALAYKELPKL 628 (1054)
T ss_pred eecCCCCEEEEEEEEcCCCeEEEEEECCHHHHHHHcCCcCCChhHHH---HHH-------HHHhcCCEEEEEEEeecCcc
Confidence 222233333322 1 2 37899999999999975332222222 222 246689999998862
Q ss_pred ---------------CceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC-c---------
Q 002770 675 ---------------GEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK-E--------- 729 (883)
Q Consensus 675 ---------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~-~--------- 729 (883)
++.|+|+++|+|++|++++++|++||++||+++|+|||+..||.++|+++||-+ +
T Consensus 629 ~~~~~~~~~r~~~E~~L~flGli~~~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~~~~vi~~~~~ 708 (1054)
T TIGR01657 629 TLQKAQDLSRDAVESNLTFLGFIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAE 708 (1054)
T ss_pred chhhhhhccHHHHhcCceEEEEEEEecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCceEEEeecc
Confidence 347999999999999999999999999999999999999999999999999921 0
Q ss_pred -----------------------------------------------------------------------eEEEecCcc
Q 002770 730 -----------------------------------------------------------------------YINSSLTPQ 738 (883)
Q Consensus 730 -----------------------------------------------------------------------~v~~~~~p~ 738 (883)
.||||++|+
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~ 788 (1054)
T TIGR01657 709 PPESGKPNQIKFEVIDSIPFASTQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPD 788 (1054)
T ss_pred cccCCCCceEEEEecCccccccccccccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHH
Confidence 489999999
Q ss_pred chHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHH
Q 002770 739 QKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQN 818 (883)
Q Consensus 739 ~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n 818 (883)
||.++|+.||+.|+.|+|+|||.||+|||++||||||| +++ + |..+||+++.+++++.++.+|++||+++.++++.
T Consensus 789 qK~~iV~~lq~~g~~V~m~GDG~ND~~ALK~AdVGIam--~~~-d-as~AA~f~l~~~~~~~I~~~I~eGR~~l~~~~~~ 864 (1054)
T TIGR01657 789 QKETLVELLQKLDYTVGMCGDGANDCGALKQADVGISL--SEA-E-ASVAAPFTSKLASISCVPNVIREGRCALVTSFQM 864 (1054)
T ss_pred HHHHHHHHHHhCCCeEEEEeCChHHHHHHHhcCcceee--ccc-c-ceeecccccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 443 3 4489999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCccccHHHHHHHhhhhhHHHHHhhhhccccccc
Q 002770 819 LSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQFHEFE 874 (883)
Q Consensus 819 ~~~a~~~n~~~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~~nsl~l~~~~~~ 874 (883)
+.|.+.|+++...... .++ ..|..++|+ .++...-++..+.++.+.+.+|.
T Consensus 865 ~~~~~~~~~~~~~~~~-~l~-~~~~~l~~~---Q~l~i~li~~~~~~l~l~~~~p~ 915 (1054)
T TIGR01657 865 FKYMALYSLIQFYSVS-ILY-LIGSNLGDG---QFLTIDLLLIFPVALLMSRNKPL 915 (1054)
T ss_pred HHHHHHHHHHHHHHHH-HHH-HccCcCccH---HHHHHHHHHHHHHHHHHHcCCch
Confidence 9999999986543322 222 234445544 56677777888888877765443
No 25
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-63 Score=534.68 Aligned_cols=547 Identities=27% Similarity=0.388 Sum_probs=413.1
Q ss_pred HHHHHHHHHHHHHHHHHHccCCccCccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-ceEEEEcCCCCC
Q 002770 250 LVGFGSIVAFLISLVSLLKPELEWDASFFEEPV-MLLGFVLLGRSLEERARIRASSDMNELLSLVST-QSRLVITSSESG 327 (883)
Q Consensus 250 Lv~l~~~~a~~~s~~~~~~~~~~~~~~~f~~~~-~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~-~~~v~~~~~~~~ 327 (883)
++.+|++++.++.++--+++..+....|....+ .+.+-+++..+-|..++.|.+....+|++...+ .+++++.
T Consensus 37 vv~vg~~lt~~l~~~~~lfg~~~~~~~f~~~i~~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~~----- 111 (681)
T COG2216 37 VVEVGSILTTFLTIFPDLFGGTGGSRLFNLAITIILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLRA----- 111 (681)
T ss_pred eehHHHHHHHHHHHhhhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhcC-----
Confidence 444555555444443333332121223333322 333445567888888887766666666655432 4454441
Q ss_pred CCCCccccCCCeEEEeeCCCcCCCCEEEECCCCeeeeeEEEEeeceEEeeccccCCCceeeccCC---CccccceeeecC
Q 002770 328 SSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLSGESLPVFKEEG---FTVSAGTINWDG 404 (883)
Q Consensus 328 ~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~IPaDg~vl~G~~~Vdes~LTGEs~pv~K~~g---~~v~aGt~~~~G 404 (883)
||.++.|++.+|+.||+|+|..||.||+||.|++|.+.||||.+||||.||-|+.| +.|-.||.+.+-
T Consensus 112 ---------~g~~~~v~st~Lk~gdiV~V~age~IP~DGeVIeG~asVdESAITGESaPViresGgD~ssVtGgT~v~SD 182 (681)
T COG2216 112 ---------DGSIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSD 182 (681)
T ss_pred ---------CCCeeeccccccccCCEEEEecCCCccCCCeEEeeeeecchhhccCCCcceeeccCCCcccccCCcEEeee
Confidence 68899999999999999999999999999999999999999999999999999998 789999999999
Q ss_pred cEEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHH-HHHHHHhcCcccchhccccCCCCC
Q 002770 405 PLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATF-AFWYYIGSQIFPDVLLSDMAGPNG 483 (883)
Q Consensus 405 ~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 483 (883)
.++++++....+|++.|++.+++.++.+|+|-+--+.-+..-++.+.++ +.+++ .+-.|.+ +
T Consensus 183 ~l~irita~pG~sFlDrMI~LVEgA~R~KTPNEIAL~iLL~~LTliFL~-~~~Tl~p~a~y~~----------------g 245 (681)
T COG2216 183 WLKIRITANPGETFLDRMIALVEGAERQKTPNEIALTILLSGLTLIFLL-AVATLYPFAIYSG----------------G 245 (681)
T ss_pred eEEEEEEcCCCccHHHHHHHHhhchhccCChhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHcC----------------C
Confidence 9999999999999999999999999999999765544332222221111 11111 1111110 1
Q ss_pred chHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEecc
Q 002770 484 NPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASF 563 (883)
Q Consensus 484 ~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~ 563 (883)
.. ..+...+++++..+|..++--.+.-=..++.+..+.+++-+++.++|..|.+|++..|||||+|-|+-.-.++.+.
T Consensus 246 ~~--~~i~~LiALlV~LIPTTIGgLLsAIGIAGMdRv~~~NViA~SGRAVEaaGDvdtliLDKTGTIT~GnR~A~~f~p~ 323 (681)
T COG2216 246 GA--ASVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVTQFNVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFIPV 323 (681)
T ss_pred CC--cCHHHHHHHHHHHhcccHHHHHHHhhhhhhhHhhhhceeecCcchhhhcCCccEEEecccCceeecchhhhheecC
Confidence 11 1234567788888888877666655567888999999999999999999999999999999999999888887764
Q ss_pred -CCChHHHHHHHHHhhhccCChHHHHHHHHHHhcCCCCCCCcCc---cccc---CceEEEE-E-CCEEEEecCHHHHHHH
Q 002770 564 -VYDESEILKIAAAVEKTATHPIAKAIVNKAESLNLTSPITRGQ---LAEP---GFGILGE-V-DGRLVAVGTLEWVYER 634 (883)
Q Consensus 564 -~~~~~~~l~~~a~~e~~s~hPi~~Ai~~~~~~~~~~~~~~~~~---~~~~---g~g~~~~-~-~g~~~~~Gs~~~i~~~ 634 (883)
+.+++++...+....-..+.|-.+.|+..+++.++..+..... +..| .-.+++. . +++.+.||+.+.+.+.
T Consensus 324 ~gv~~~~la~aa~lsSl~DeTpEGrSIV~LA~~~~~~~~~~~~~~~~~fvpFtA~TRmSGvd~~~~~~irKGA~dai~~~ 403 (681)
T COG2216 324 PGVSEEELADAAQLASLADETPEGRSIVELAKKLGIELREDDLQSHAEFVPFTAQTRMSGVDLPGGREIRKGAVDAIRRY 403 (681)
T ss_pred CCCCHHHHHHHHHHhhhccCCCCcccHHHHHHHhccCCCcccccccceeeecceecccccccCCCCceeecccHHHHHHH
Confidence 6778888887777777888999999999999887664443211 1111 1111111 1 3478999999999887
Q ss_pred hhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcH
Q 002770 635 FQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDRE 714 (883)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~ 714 (883)
....... ....++..+++ .+..|.+.+.+..++. ++|++.++|-+|++.+|-+.+||++|||++|+||||+
T Consensus 404 v~~~~g~-~p~~l~~~~~~-------vs~~GGTPL~V~~~~~-~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~ 474 (681)
T COG2216 404 VRERGGH-IPEDLDAAVDE-------VSRLGGTPLVVVENGR-ILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNP 474 (681)
T ss_pred HHhcCCC-CCHHHHHHHHH-------HHhcCCCceEEEECCE-EEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCH
Confidence 6533221 11222222222 2557889999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEe
Q 002770 715 EAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILL 794 (883)
Q Consensus 715 ~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~ 794 (883)
.||..+|++.|++ ++.++++||+|.++|+.-|.+|+-|+|+|||.||+|||++||||+|| ++|+++|||+++.|=+
T Consensus 475 ~TAa~IA~EAGVD--dfiAeatPEdK~~~I~~eQ~~grlVAMtGDGTNDAPALAqAdVg~AM--NsGTqAAkEAaNMVDL 550 (681)
T COG2216 475 LTAAAIAAEAGVD--DFIAEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPALAQADVGVAM--NSGTQAAKEAANMVDL 550 (681)
T ss_pred HHHHHHHHHhCch--hhhhcCChHHHHHHHHHHHhcCcEEEEcCCCCCcchhhhhcchhhhh--ccccHHHHHhhccccc
Confidence 9999999999998 79999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhcccC
Q 002770 795 GNKLSQVVDALDLAKATMAKVYQNLSWAVA----YNVVAIPIAAGALLPQYD 842 (883)
Q Consensus 795 ~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~----~n~~~i~la~~~~~~~~g 842 (883)
++|...+.+.++.|++..-+--.--.|++. .-...||..+...+|.++
T Consensus 551 DS~PTKlievV~IGKqlLiTRGaLTTFSIANDvAKYFaIiPA~F~~~~P~l~ 602 (681)
T COG2216 551 DSNPTKLIEVVEIGKQLLITRGALTTFSIANDVAKYFAIIPAMFAAAYPQLG 602 (681)
T ss_pred CCCccceehHhhhhhhheeecccceeeehhhHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999865332222222222 113456655566666665
No 26
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-65 Score=576.98 Aligned_cols=591 Identities=20% Similarity=0.283 Sum_probs=441.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHc-cCCccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCC
Q 002770 246 NMNSLVGFGSIVAFLISLVSLLK-PELEWDASFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSS 324 (883)
Q Consensus 246 ~md~Lv~l~~~~a~~~s~~~~~~-~~~~~~~~~f~~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~ 324 (883)
....|+.+|++++|+...+..-. ...+....| .+++|...+.+.-...+++..|..+-++++.++.|+.++|+|
T Consensus 95 ~~~ill~~~a~l~~~~y~~~~s~~~~~~~~nly--~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~ViR--- 169 (1019)
T KOG0203|consen 95 GFSILLWIGAILCFVAYGIQASTEDDPSDDNLY--LGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVIR--- 169 (1019)
T ss_pred hHHHHHHHHHHHHHHHHhhhcccCCCCCCcceE--EEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheeee---
Confidence 47788999998888765443222 111122233 234444444455566778888899999999999999999999
Q ss_pred CCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCCCeeeeeEEEEeec-eEEeeccccCCCceeeccCC----------C
Q 002770 325 ESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGR-SVVDESMLSGESLPVFKEEG----------F 393 (883)
Q Consensus 325 ~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~IPaDg~vl~G~-~~Vdes~LTGEs~pv~K~~g----------~ 393 (883)
||....+..+|+++||+|.++-|++||||.+++++. +.+|+|+|||||+|..+.+. +
T Consensus 170 ------------dg~k~~i~~eelVvGD~v~vk~GdrVPADiRiis~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~N 237 (1019)
T KOG0203|consen 170 ------------DGEKMTINAEELVVGDLVEVKGGDRVPADIRIISATGCKVDNSSLTGESEPQTRSPEFTHENPLETRN 237 (1019)
T ss_pred ------------cceeEEechhhcccccceeeccCCcccceeEEEEecceeEeccccccccCCccCCccccccCchhhee
Confidence 899999999999999999999999999999999997 68999999999999988663 4
Q ss_pred ccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccch
Q 002770 394 TVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDV 473 (883)
Q Consensus 394 ~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~ 473 (883)
.-+.+|.+.+|.+++.|.+||.+|.+|+|..+-..-...++|++...+.+..+.....+.+.+..|..-...+
T Consensus 238 i~f~st~~veG~~~givi~tGd~Tv~G~ia~l~~~~~~~~t~~~~ei~~fi~~it~vAi~~~i~fF~~~~~~g------- 310 (1019)
T KOG0203|consen 238 IAFFSTNCVEGTGRGIVIATGDRTVMGRIASLASGLEDGKTPIAKEIEHFIHIITGVAIFLGISFFILALILG------- 310 (1019)
T ss_pred eeeeeeEEecceEEEEEEecCCceEEeehhhhhccCCCCCCcchhhhhchHHHHHHHHHHHHHHHHHHHHhhc-------
Confidence 5789999999999999999999999999999988888899999999999887776666666655554433322
Q ss_pred hccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCC
Q 002770 474 LLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEG 553 (883)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~ 553 (883)
..+..++...+.+++...|.+|...+...+.....+++++++++|+.++.|.||..++||.|||||||+|
T Consensus 311 ----------y~~l~avv~~i~iivAnvPeGL~~tvTv~LtltakrMa~Knc~vknLeavetlGsts~I~SDktGTlTqn 380 (1019)
T KOG0203|consen 311 ----------YEWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQN 380 (1019)
T ss_pred ----------chhHHHhhhhheeEEecCcCCccceehhhHHHHHHHHhhceeEEeeeeheeecccceeEeecceeeEEec
Confidence 2344556668899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeccC-C---C--h--------------HHHHHHHHHhh----------------hccCChHHHHHHHHHHhcC
Q 002770 554 KPAVFNVASFV-Y---D--E--------------SEILKIAAAVE----------------KTATHPIAKAIVNKAESLN 597 (883)
Q Consensus 554 ~~~v~~v~~~~-~---~--~--------------~~~l~~~a~~e----------------~~s~hPi~~Ai~~~~~~~~ 597 (883)
+|+|.++|.+. + + + .+++..+.... ....++.+.|++++++...
T Consensus 381 rMtVahlw~d~~i~~~d~~~~~~~~~~~~~~~~~~~l~r~~~lCn~a~~~~gq~dvPv~kk~v~G~~se~ALlk~~e~~~ 460 (1019)
T KOG0203|consen 381 RMTVAHLWFDNQIHEADTTEDQSGQSFDKSSATFIALSRIATLCNRAVFKPGQDDVPVLKRDVAGDASEVALLKFIELIL 460 (1019)
T ss_pred ceEEEeeccCCceeeeechhhhhcccccccCchHHHHHHHHHHhCcceecccccCCceeeeeccCCHHHHHHHHHHHHhc
Confidence 99999997642 0 0 0 12232222211 1245788999999886431
Q ss_pred CC-------CCCCcCcccccCceEEEE---------ECCEEEEecCHHHHHHHhhccCCCchh--------hhHHHHHhh
Q 002770 598 LT-------SPITRGQLAEPGFGILGE---------VDGRLVAVGTLEWVYERFQKQGDHSDV--------QHLEHAVTH 653 (883)
Q Consensus 598 ~~-------~~~~~~~~~~~g~g~~~~---------~~g~~~~~Gs~~~i~~~~~~~~~~~~~--------~~~~~~~~~ 653 (883)
-. .+.+.+............ .+.-.+.||+||.++++|+...-.... ....+.+..
T Consensus 461 ~~~~~~R~~~~kv~eipfNSt~Kyqlsih~~~d~~~~~~~l~mKGape~il~~CSTi~i~g~e~pld~~~~~~f~~ay~~ 540 (1019)
T KOG0203|consen 461 GSVMELRERNPKVAEIPFNSTNKYQLSIHETEDPSDPRFLLVMKGAPERILDRCSTILINGEEKPLDEKLKEAFQEAYLE 540 (1019)
T ss_pred chHHHHHHhhHHhhcCCcccccceEEEEEecCCCCCccceeeecCChHHHHhhccceeecCCCCCcCHHHHHHHHHHHHH
Confidence 11 000001111111111111 122457899999999999753322111 111111111
Q ss_pred hc---cc-------ccCcCCCCCeEEEE------EecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHH
Q 002770 654 QS---SE-------LASPSNYSKSVVYV------GREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAV 717 (883)
Q Consensus 654 ~~---~~-------~~~~~~~g~~~~~~------a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a 717 (883)
+. ++ .-...+...+..+- -.++.+|+|.+.+-||+|..+++++..||.+||+++|+|||++.+|
T Consensus 541 lg~~GerVlgF~~~~l~~~~~p~~~~f~~d~~n~p~~nl~FlGl~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiTA 620 (1019)
T KOG0203|consen 541 LGGLGERVLGFCDLELPDEKFPRGFQFDTDDVNFPTDNLRFLGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITA 620 (1019)
T ss_pred hhhcchHHHHHHHHhcchhcCCCceEeecCCCCCcchhccccchhhccCCCcccCchhhhhhhhhCceEEEEecCccchh
Confidence 10 00 00011222222222 2256679999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC---------------------------------------------------CceEEEecCccchHHHHHH
Q 002770 718 AATAKEVGIG---------------------------------------------------KEYINSSLTPQQKSEVIST 746 (883)
Q Consensus 718 ~~ia~~~gi~---------------------------------------------------~~~v~~~~~p~~K~~~v~~ 746 (883)
+++|+++||- .+.||||-+|+||+-+|+.
T Consensus 621 kAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~ 700 (1019)
T KOG0203|consen 621 KAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELPDMSSEQLDELLQNHQEIVFARTSPQQKLIIVEG 700 (1019)
T ss_pred hhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEecccccccCHHHHHHHHHhCCceEEEecCccceEEeEhh
Confidence 9999999971 1268999999999999999
Q ss_pred HhhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 747 LQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYN 826 (883)
Q Consensus 747 l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n 826 (883)
.|+.|..|+.+|||.||+|||+.||||||||. .|+|.+|++||++|++|||..|+.-+++||-+|.|.|+.++|.++.|
T Consensus 701 cQr~GaiVaVTGDGVNDsPALKKADIGVAMGi-aGSDvsKqAADmILLDDNFASIVtGVEEGRLiFDNLKKsIAYTLTsN 779 (1019)
T KOG0203|consen 701 CQRQGAIVAVTGDGVNDSPALKKADIGVAMGI-AGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSN 779 (1019)
T ss_pred hhhcCcEEEEeCCCcCCChhhcccccceeecc-ccchHHHhhcceEEecCcchhheeecccceehhhhHHHHHHHHHHhc
Confidence 99999999999999999999999999999953 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccCccc--cHHHHHHHhhhhhHHHHHhhhhccccccccc
Q 002770 827 VVAIPIAAGALLPQYDFAM--TPSLSGGLMALSSIFVVSNSLLLQFHEFESN 876 (883)
Q Consensus 827 ~~~i~la~~~~~~~~g~~l--~P~~aa~~m~~ssl~v~~nsl~l~~~~~~~~ 876 (883)
+--|..-+..+ .+|++| .++ .....--..-+.-|+.|.|..++++
T Consensus 780 ipEI~PfL~fi--~~giPLplgti---tIL~IDLgTDmvPAiSLAYE~aEsD 826 (1019)
T KOG0203|consen 780 IPEITPFLLFI--LFGIPLPLGTV---TILCIDLGTDIVPAISLAYEKAESD 826 (1019)
T ss_pred chhHhHHHHHH--HhCCCcccchh---hhhhhHhhcccchhhhHhccCchhh
Confidence 86544333222 245543 232 1111122233455667777655443
No 27
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-63 Score=539.59 Aligned_cols=523 Identities=24% Similarity=0.325 Sum_probs=410.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCCCeee
Q 002770 284 LLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIP 363 (883)
Q Consensus 284 ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~IP 363 (883)
+..++++...+....+..|.+...+|+..+..++.|+| ||+|.++++++|+||||+.++.|++||
T Consensus 103 I~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVlR---------------DGkw~E~eAs~lVPGDIlsik~GdIiP 167 (942)
T KOG0205|consen 103 ICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVLR---------------DGKWSEQEASILVPGDILSIKLGDIIP 167 (942)
T ss_pred hheeeeecceeeeeeccccchHHHHHHhccCcccEEee---------------cCeeeeeeccccccCceeeeccCCEec
Confidence 33344455455555555677777788888888888888 999999999999999999999999999
Q ss_pred eeEEEEeec-eEEeeccccCCCceeeccCCCccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHH
Q 002770 364 VDGRVLAGR-SVVDESMLSGESLPVFKEEGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADA 442 (883)
Q Consensus 364 aDg~vl~G~-~~Vdes~LTGEs~pv~K~~g~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~ 442 (883)
|||++++|+ ..||+|.|||||.||.|.+||.+|+||.+..|.+.++|++||.+|.+|+-..+|.. ..+...+|+.++.
T Consensus 168 aDaRLl~gD~LkiDQSAlTGESLpvtKh~gd~vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVds-t~~~GHFqkVLt~ 246 (942)
T KOG0205|consen 168 ADARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKVLTG 246 (942)
T ss_pred CccceecCCccccchhhhcCCccccccCCCCceecccccccceEEEEEEEeccceeehhhHHhhcC-CCCcccHHHHHHh
Confidence 999999998 56999999999999999999999999999999999999999999999999999988 5667889999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhh-cccccchhHHHHHHHHHHHHH
Q 002770 443 IAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVS-CPCALGLATPTAILVGTSLGA 521 (883)
Q Consensus 443 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva-~P~aL~la~p~a~~~~~~~~a 521 (883)
+..+.+..+.+-.++.+.+.|+..... ..-....+.++++. +|.+++-.+.+.+++|..+++
T Consensus 247 IGn~ci~si~~g~lie~~vmy~~q~R~-----------------~r~~i~nLlvllIGgiPiamPtVlsvTMAiGs~rLa 309 (942)
T KOG0205|consen 247 IGNFCICSIALGMLIEITVMYPIQHRL-----------------YRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLS 309 (942)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhh-----------------hhhhhhheheeeecccccccceeeeehhhHHHHHHH
Confidence 888776555444443333333333221 12234456666666 999999999999999999999
Q ss_pred hcCceecCchHHhhhccCcEEEecCcccccCCceEEEE----EeccCCChHHHHHHHHHhh-hccCChHHHHHHHHHHhc
Q 002770 522 KQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFN----VASFVYDESEILKIAAAVE-KTATHPIAKAIVNKAESL 596 (883)
Q Consensus 522 ~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~----v~~~~~~~~~~l~~~a~~e-~~s~hPi~~Ai~~~~~~~ 596 (883)
++|.+.|...++|.|+.+|++|+|||||||.|+++|.+ +...+.+.++++-.++.+. ....+.+++|++....+.
T Consensus 310 qqgAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~~~L~A~rAsr~en~DAID~A~v~~L~dP 389 (942)
T KOG0205|consen 310 QQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDDVLLTAARASRKENQDAIDAAIVGMLADP 389 (942)
T ss_pred hcccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHHHHHHHHHHhhhcChhhHHHHHHHhhcCH
Confidence 99999999999999999999999999999999999977 4555777887766655443 445678899999876531
Q ss_pred C---CCCCCCcCccccc-CceEEEEE---CC--EEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCe
Q 002770 597 N---LTSPITRGQLAEP-GFGILGEV---DG--RLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKS 667 (883)
Q Consensus 597 ~---~~~~~~~~~~~~~-g~g~~~~~---~g--~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 667 (883)
. ..+....-....| .+....++ +| +++.||+|+++++.|....+- .++..+.+. .+.+.|.+
T Consensus 390 Keara~ikevhF~PFnPV~Krta~ty~d~dG~~~r~sKGAPeqil~l~~~~~~i--~~~vh~~id-------~~AeRGlR 460 (942)
T KOG0205|consen 390 KEARAGIKEVHFLPFNPVDKRTALTYIDPDGNWHRVSKGAPEQILKLCNEDHDI--PERVHSIID-------KFAERGLR 460 (942)
T ss_pred HHHhhCceEEeeccCCccccceEEEEECCCCCEEEecCCChHHHHHHhhccCcc--hHHHHHHHH-------HHHHhcch
Confidence 0 0000000011112 22233333 23 577899999999998754331 122222232 24667888
Q ss_pred EEEEEecC------------ceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc------
Q 002770 668 VVYVGREG------------EGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE------ 729 (883)
Q Consensus 668 ~~~~a~~~------------~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~------ 729 (883)
.+.++++. ..++|+.-+-||+|.+..++|++....|+.|.|+|||...-++..++++|....
T Consensus 461 SLgVArq~v~e~~~~~~g~pw~~~gllp~fdpprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgtnmypss~ 540 (942)
T KOG0205|consen 461 SLAVARQEVPEKTKESPGGPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSA 540 (942)
T ss_pred hhhhhhhccccccccCCCCCcccccccccCCCCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhccccCcCCchh
Confidence 77787642 258999999999999999999999999999999999999999999999987321
Q ss_pred ----------------------eEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHh
Q 002770 730 ----------------------YINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAAST 787 (883)
Q Consensus 730 ----------------------~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~ 787 (883)
+-|+.+.|++|.++|+.||++|+.++|.|||.||+|+|+.||+|||+ .+++|.++.
T Consensus 541 llG~~~~~~~~~~~v~elie~adgfAgVfpehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiav--a~atdaar~ 618 (942)
T KOG0205|consen 541 LLGLGKDGSMPGSPVDELIEKADGFAGVFPEHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAV--ADATDAARS 618 (942)
T ss_pred hccCCCCCCCCCCcHHHHhhhccCccccCHHHHHHHHHHHhhcCceecccCCCcccchhhcccccceee--ccchhhhcc
Confidence 45788999999999999999999999999999999999999999999 999999999
Q ss_pred hcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccHHHHH
Q 002770 788 AASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSG 851 (883)
Q Consensus 788 ~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~la~~~~~~~~g~~l~P~~aa 851 (883)
++|+|+..+.++.+..++..+|.+|++++.+..|++...+-.+ +.++.+.-.|.+.++|.+..
T Consensus 619 asdiVltepglSviI~avltSraIfqrmknytiyavsitiriv-~gfml~alIw~~df~pfmvl 681 (942)
T KOG0205|consen 619 ASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV-FGFMLIALIWEFDFSPFMVL 681 (942)
T ss_pred cccEEEcCCCchhhHHHHHHHHHHHHHHhhheeeeehhHHHHH-HHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999888876654322 21111111244456776543
No 28
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=1.2e-60 Score=598.65 Aligned_cols=558 Identities=19% Similarity=0.212 Sum_probs=411.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEE
Q 002770 275 ASFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSV 354 (883)
Q Consensus 275 ~~~f~~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV 354 (883)
.+++...++++++..+++++|++.|+|+++.++ ++.++++++ +|++++++++||+|||+|
T Consensus 51 ~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~n------~~~~~v~~~--------------~~~~~~i~~~~l~~GDiv 110 (1057)
T TIGR01652 51 GTSIVPLAFVLIVTAIKEAIEDIRRRRRDKEVN------NRLTEVLEG--------------HGQFVEIPWKDLRVGDIV 110 (1057)
T ss_pred cHhHHhHHHHHHHHHHHHHHHHHHHHHhHHHHh------CcEEEEECC--------------CCcEEEeeeecccCCCEE
Confidence 345556677777888999999999999887653 467777761 378999999999999999
Q ss_pred EECCCCeeeeeEEEEe-----eceEEeeccccCCCceeeccCC-------------------------------------
Q 002770 355 LVLPGETIPVDGRVLA-----GRSVVDESMLSGESLPVFKEEG------------------------------------- 392 (883)
Q Consensus 355 ~v~~Ge~IPaDg~vl~-----G~~~Vdes~LTGEs~pv~K~~g------------------------------------- 392 (883)
.|++||+||||++|++ |.+.||||.|||||.|+.|.+.
T Consensus 111 ~l~~g~~iPaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~ 190 (1057)
T TIGR01652 111 KVKKDERIPADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTI 190 (1057)
T ss_pred EEcCCCcccceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEE
Confidence 9999999999999997 7799999999999999998642
Q ss_pred -----------Cccccceeeec-CcEEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHH
Q 002770 393 -----------FTVSAGTINWD-GPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFA 460 (883)
Q Consensus 393 -----------~~v~aGt~~~~-G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~ 460 (883)
+.+++||.+.+ |.+.+.|++||.+|.+++. ....+.+++++++..+++..+++.+.++++++.++
T Consensus 191 ~~~~~~~l~~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk~~~n---~~~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i 267 (1057)
T TIGR01652 191 NGDRQYPLSPDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRN---ATQAPSKRSRLEKELNFLIIILFCLLFVLCLISSV 267 (1057)
T ss_pred CCCCcccCCHHHhHhcCCEecCCCeEEEEEEEEchhhhhhhc---CCCCcccccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34688888888 8999999999999977664 34456678999999999988777666666655555
Q ss_pred HHHHHhcCcccchhccccC---CCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHHHH------HHHHhc----Ccee
Q 002770 461 FWYYIGSQIFPDVLLSDMA---GPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGT------SLGAKQ----GLLI 527 (883)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~------~~~a~~----gilv 527 (883)
+..++........|+.... ......+...+.+++.++...+|.+|...+.++...+. .++.++ ++++
T Consensus 268 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~L~~~~IPisL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~v 347 (1057)
T TIGR01652 268 GAGIWNDAHGKDLWYIRLDVSERNAAANGFFSFLTFLILFSSLIPISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASV 347 (1057)
T ss_pred HHHheecccCCCccceecCcccccchhHHHHHHHHHHHHHhhhcceeeeehHHHHHHHHHHHHhhhhhhhccccCCccee
Confidence 4333221100001110000 00112234467788899999999999999998888777 666653 5999
Q ss_pred cCchHHhhhccCcEEEecCcccccCCceEEEEEeccC--C----C------------------------------h----
Q 002770 528 RGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFV--Y----D------------------------------E---- 567 (883)
Q Consensus 528 k~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~--~----~------------------------------~---- 567 (883)
|+.+..|+||++++||+|||||||+|+|.+.++...+ + + +
T Consensus 348 r~~~~~E~LG~v~~I~sDKTGTLT~N~M~~~~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (1057)
T TIGR01652 348 RTSNLNEELGQVEYIFSDKTGTLTQNIMEFKKCSIAGVSYGDGFTEIKDAIRERLGSYVENENSMLVESKGFTFVDPRLV 427 (1057)
T ss_pred ecCCChHHhcCeeEEEEcCCCceeeeeEEEEEEEECCEEecCCcchHHHHhhhcccccccccccccccccccccCcHHHH
Confidence 9999999999999999999999999999999985321 0 0 0
Q ss_pred -------------HHHHHH---HHHh--h----------hccCChHHHHHHHHHHhcCCCCCCCc---------------
Q 002770 568 -------------SEILKI---AAAV--E----------KTATHPIAKAIVNKAESLNLTSPITR--------------- 604 (883)
Q Consensus 568 -------------~~~l~~---~a~~--e----------~~s~hPi~~Ai~~~~~~~~~~~~~~~--------------- 604 (883)
.+++.. +..+ + ..+.+|.+.|++++++..|+......
T Consensus 428 ~~~~~~~~~~~~~~~~l~~l~lC~~v~~~~~~~~~~~~~y~~~sp~E~ALl~~a~~~g~~~~~~~~~~~~~~i~~~~~~~ 507 (1057)
T TIGR01652 428 DLLKTNKPNAKRINEFFLALALCHTVVPEFNDDGPEEITYQAASPDEAALVKAARDVGFVFFERTPKSISLLIEMHGETK 507 (1057)
T ss_pred HhhhcCCchhHHHHHHHHHHHhcCcccccccCCCCCceEEEccCCcHHHHHHHHHHCCCEEEEecCCceEEEEEeCCCEE
Confidence 011111 1111 1 11468999999999988876432100
Q ss_pred ------CcccccCceEEE-EE---CC--EEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEE
Q 002770 605 ------GQLAEPGFGILG-EV---DG--RLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVG 672 (883)
Q Consensus 605 ------~~~~~~g~g~~~-~~---~g--~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a 672 (883)
.+.....+..+. .+ ++ ..++||+++.+.++|....+ .......+ ....+..+|.|++.+|
T Consensus 508 ~~~il~~~pF~s~rKrmSviv~~~~~~~~l~~KGA~e~il~~~~~~~~-~~~~~~~~-------~~~~~a~~GlRtL~~A 579 (1057)
T TIGR01652 508 EYEILNVLEFNSDRKRMSVIVRNPDGRIKLLCKGADTVIFKRLSSGGN-QVNEETKE-------HLENYASEGLRTLCIA 579 (1057)
T ss_pred EEEEEEecccCCCCCeEEEEEEeCCCeEEEEEeCcHHHHHHHhhccch-hHHHHHHH-------HHHHHHHcCCcEEEEE
Confidence 011112222222 22 22 46799999999999864211 11111111 2233466788888887
Q ss_pred e-------------------------------------cCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHH
Q 002770 673 R-------------------------------------EGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREE 715 (883)
Q Consensus 673 ~-------------------------------------~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~ 715 (883)
+ .+.+++|+++++|++|++++++|+.||++||++||+|||+.+
T Consensus 580 ~k~l~~~e~~~~~~~~~~a~~~~~~r~~~~~~~~~~iE~~L~~lG~~gieD~lq~~v~etI~~L~~AGIkv~mlTGD~~~ 659 (1057)
T TIGR01652 580 YRELSEEEYEEWNEEYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVE 659 (1057)
T ss_pred EEECCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCEEEEEEEEhhhhhhccHHHHHHHHHCCCeEEEEcCCcHH
Confidence 5 144799999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCc------------------------------------------------------------------
Q 002770 716 AVAATAKEVGIGKE------------------------------------------------------------------ 729 (883)
Q Consensus 716 ~a~~ia~~~gi~~~------------------------------------------------------------------ 729 (883)
||.++|+++||-..
T Consensus 660 TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l 739 (1057)
T TIGR01652 660 TAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNLGDSGNVALVIDGKSLGYALDEELEKEFLQL 739 (1057)
T ss_pred HHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhhccCCceEEEEccHHHHHHHhhHHHHHHHHH
Confidence 99999999997210
Q ss_pred ------eEEEecCccchHHHHHHHhhc-CCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHH
Q 002770 730 ------YINSSLTPQQKSEVISTLQTS-GHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVV 802 (883)
Q Consensus 730 ------~v~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~ 802 (883)
.++||++|+||.++|+.+|+. |+.|+|+|||.||++||++|||||++.+.++. .|+.+||+++.+ +..+.
T Consensus 740 ~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~AdVGIgi~g~eg~-qA~~aaD~~i~~--F~~L~ 816 (1057)
T TIGR01652 740 ALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADVGVGISGKEGM-QAVMASDFAIGQ--FRFLT 816 (1057)
T ss_pred HhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhcCeeeEecChHHH-HHHHhhhhhhhh--HHHHH
Confidence 279999999999999999998 99999999999999999999999998433332 578999999965 99999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcccCcc-ccHHHHHHHhhhhhHHHHHhhhhc
Q 002770 803 DAL-DLAKATMAKVYQNLSWAVAYNVVAIPIAA-GALLPQYDFA-MTPSLSGGLMALSSIFVVSNSLLL 868 (883)
Q Consensus 803 ~~i-~~~r~~~~~i~~n~~~a~~~n~~~i~la~-~~~~~~~g~~-l~P~~aa~~m~~ssl~v~~nsl~l 868 (883)
+++ .+||.+++++++.+.|.+.-|++.+.+-+ +.++ .++. .+|.....++....+...+.++.+
T Consensus 817 ~lll~~GR~~~~r~~~~i~~~~~kn~~~~~~~~~~~~~--~~~s~~~~~~~~~l~~~n~~~t~lp~~~l 883 (1057)
T TIGR01652 817 KLLLVHGRWSYKRISKMILYFFYKNLIFAIIQFWYSFY--NGFSGQTLYEGWYMVLYNVFFTALPVISL 883 (1057)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCcHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 987 78999999999999999999986554433 2222 1221 334444445555666666666655
No 29
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-60 Score=538.55 Aligned_cols=504 Identities=23% Similarity=0.335 Sum_probs=381.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECC-C
Q 002770 281 PVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLP-G 359 (883)
Q Consensus 281 ~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~-G 359 (883)
++.++.+.+.+-.+.-+..++.+..++++... +..++|+| ||.+++|.++||+|||++.+.+ |
T Consensus 217 A~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~-~~~V~V~R---------------~g~~~ti~S~eLVPGDil~i~~~~ 280 (1140)
T KOG0208|consen 217 AFCIVIISVYSIVLSVYETRKQSIRLRSMVKF-TCPVTVIR---------------DGFWETVDSSELVPGDILYIPPPG 280 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEE---------------CCEEEEEeccccccccEEEECCCC
Confidence 44444345555566666666666666665543 34566677 8999999999999999999999 8
Q ss_pred CeeeeeEEEEeeceEEeeccccCCCceeeccCC-------------------Cccccceeee------cCcEEEEEEeec
Q 002770 360 ETIPVDGRVLAGRSVVDESMLSGESLPVFKEEG-------------------FTVSAGTINW------DGPLRIEACSTG 414 (883)
Q Consensus 360 e~IPaDg~vl~G~~~Vdes~LTGEs~pv~K~~g-------------------~~v~aGt~~~------~G~~~~~v~~~g 414 (883)
-..|||++|++|+|.||||||||||+|+.|.+- ..+|.||.++ ++...+.|++||
T Consensus 281 ~~~PcDa~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r~~~g~~v~a~V~RTG 360 (1140)
T KOG0208|consen 281 KIMPCDALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQARAYLGGPVLAMVLRTG 360 (1140)
T ss_pred eEeecceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcCcceeeccceEEEeecCCCCceEEEEEecc
Confidence 999999999999999999999999999999763 2478999887 478999999999
Q ss_pred CccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHH
Q 002770 415 SNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSV 494 (883)
Q Consensus 415 ~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 494 (883)
-+|..|++++.+..++....++-+ |.+ .|+....+++++.|++..+... ..|.+....+++++
T Consensus 361 F~T~KGqLVRsilyPkP~~fkfyr--ds~--~fi~~l~~ia~~gfiy~~i~l~-------------~~g~~~~~iiirsL 423 (1140)
T KOG0208|consen 361 FSTTKGQLVRSILYPKPVNFKFYR--DSF--KFILFLVIIALIGFIYTAIVLN-------------LLGVPLKTIIIRSL 423 (1140)
T ss_pred ccccccHHHHhhcCCCCcccHHHH--HHH--HHHHHHHHHHHHHHHHHhHhHH-------------HcCCCHHHHhhhhh
Confidence 999999999999886654443333 332 2333333344444443222111 12344556688999
Q ss_pred HHHhhhcccccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccCCC---hH---
Q 002770 495 DVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYD---ES--- 568 (883)
Q Consensus 495 ~vlvva~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~~~---~~--- 568 (883)
.++.+..|+||+.+....+..+.+|+.|+||.|-+++.+...|++|++|||||||||++.+++..+.+...+ ..
T Consensus 424 DliTi~VPPALPAaltvG~~~a~~RLkkk~IfCisP~rIn~~G~i~~~cFDKTGTLTEdGLDl~gv~~~~~~~~~~~~~~ 503 (1140)
T KOG0208|consen 424 DLITIVVPPALPAALTVGIIYAQSRLKKKGIFCISPQRINLCGKLNLVCFDKTGTLTEDGLDLWGVVPVERNVDDGPELK 503 (1140)
T ss_pred cEEEEecCCCchhhhhHHHHHHHHHHHhcCeEEcCccceeecceeeEEEEcCCCcccccceeEEEEEeccccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999888653110 00
Q ss_pred ----HH----------------HHHHHHh------h----hccCChHHHHHHHHHHhc--------------C-CC----
Q 002770 569 ----EI----------------LKIAAAV------E----KTATHPIAKAIVNKAESL--------------N-LT---- 599 (883)
Q Consensus 569 ----~~----------------l~~~a~~------e----~~s~hPi~~Ai~~~~~~~--------------~-~~---- 599 (883)
+. ..+++++ . ....+|++..+.+..... + ..
T Consensus 504 ~~~~~~~~~~~~l~~~~~~~~~~~~~~a~atCHSL~~v~g~l~GDPLdlkmfe~t~w~~ee~~~~~~~~~~~~~~~p~v~ 583 (1140)
T KOG0208|consen 504 VVTEDSLQLFYKLSLRSSSLPMGNLVAAMATCHSLTLVDGTLVGDPLDLKMFESTGWVYEEADIEDEATREFNTLIPTVV 583 (1140)
T ss_pred hhhhhhccceeeccccccCCchHHHHHHHhhhceeEEeCCeeccCceeeeeeeccceEEEeccccchhhhhhCCccCCEe
Confidence 00 0111111 0 112355555444322110 0 00
Q ss_pred CCCC--cCcccccC---ceE-------------EEEE--C----CEEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhc
Q 002770 600 SPIT--RGQLAEPG---FGI-------------LGEV--D----GRLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQS 655 (883)
Q Consensus 600 ~~~~--~~~~~~~g---~g~-------------~~~~--~----g~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 655 (883)
.|.. .+.....+ .++ +..+ . -..|+||+||.+.+.|....-+.+.++..+.+
T Consensus 584 ~p~~~~~~~~t~~~~~~~si~k~feF~S~LrRMSVIv~~~~e~~~~~ftKGaPE~I~~ic~p~tvP~dy~evl~~Y---- 659 (1140)
T KOG0208|consen 584 RPPENAFNQSTECGEGEISIVKQFEFSSALRRMSVIVSTGGEDKMMVFTKGAPESIAEICKPETVPADYQEVLKEY---- 659 (1140)
T ss_pred CCCcccccCCCcCCCcceEEEEecccchhhheEEEEEecCCCCceEeeccCCHHHHHHhcCcccCCccHHHHHHHH----
Confidence 0100 01111111 111 1111 1 15789999999999998876666666555444
Q ss_pred ccccCcCCCCCeEEEEEec--------------------CceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHH
Q 002770 656 SELASPSNYSKSVVYVGRE--------------------GEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREE 715 (883)
Q Consensus 656 ~~~~~~~~~g~~~~~~a~~--------------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~ 715 (883)
..+|.|++.+|.. +.+|+|++.|++++|++++.+|++|.+++|+++|+||||..
T Consensus 660 ------t~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVmeNkLK~~T~~VI~eL~~AnIRtVMcTGDNll 733 (1140)
T KOG0208|consen 660 ------THQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLIVMENKLKEETKRVIDELNRANIRTVMCTGDNLL 733 (1140)
T ss_pred ------HhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEEEeecccccccHHHHHHHHhhcceEEEEcCCchh
Confidence 5578999998862 34699999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCC-------------------------------------------------------------------
Q 002770 716 AVAATAKEVGIGK------------------------------------------------------------------- 728 (883)
Q Consensus 716 ~a~~ia~~~gi~~------------------------------------------------------------------- 728 (883)
||..+||+||+-+
T Consensus 734 TaisVakeCgmi~p~~~v~~~~~~~~~~~~~~~i~w~~ve~~~~~~~~~~~~~~~~~~~~~~d~~~~~~yhlA~sG~~f~ 813 (1140)
T KOG0208|consen 734 TAISVAKECGMIEPQVKVIIPELEPPEDDSIAQIVWLCVESQTQFLDPKEPDPDLASVKLSLDVLSEKDYHLAMSGKTFQ 813 (1140)
T ss_pred eeeehhhcccccCCCCeEEEEeccCCccCCCceeEEEEccCccccCCCCccCccccCCccChhhhccceeEEEecCchhH
Confidence 9999999999810
Q ss_pred ----------------ceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEE
Q 002770 729 ----------------EYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASII 792 (883)
Q Consensus 729 ----------------~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~v 792 (883)
-.+||||+|+||.++|+.||+.|+.|+|+|||.||+.||++|||||++ ++ ..|.-+|.++
T Consensus 814 ~i~~~~~~l~~~Il~~~~VfARMsP~qK~~Lie~lQkl~y~VgfCGDGANDCgALKaAdvGISL--Se--aEASvAApFT 889 (1140)
T KOG0208|consen 814 VILEHFPELVPKILLKGTVFARMSPDQKAELIEALQKLGYKVGFCGDGANDCGALKAADVGISL--SE--AEASVAAPFT 889 (1140)
T ss_pred HHHhhcHHHHHHHHhcCeEEeecCchhHHHHHHHHHhcCcEEEecCCCcchhhhhhhcccCcch--hh--hhHhhcCccc
Confidence 068999999999999999999999999999999999999999999999 44 3577789999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 793 LLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIP 831 (883)
Q Consensus 793 l~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~i~ 831 (883)
-...+++.++++|++||+.+-+-...++|...|.++...
T Consensus 890 Sk~~~I~cVp~vIrEGRaALVTSf~~FkYMalYs~iqFi 928 (1140)
T KOG0208|consen 890 SKTPSISCVPDVIREGRAALVTSFACFKYMALYSAIQFI 928 (1140)
T ss_pred cCCCchhhHhHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999876543
No 30
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=3.1e-55 Score=544.13 Aligned_cols=523 Identities=19% Similarity=0.211 Sum_probs=380.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEE
Q 002770 276 SFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVL 355 (883)
Q Consensus 276 ~~f~~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~ 355 (883)
+++...++++++..+++++|++.|+|+++.++ ++.+++++ +|.++++++++|+|||+|.
T Consensus 138 t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N------~~~~~v~~---------------~~~~~~i~~~~i~vGDiv~ 196 (1178)
T PLN03190 138 ASILPLAFVLLVTAVKDAYEDWRRHRSDRIEN------NRLAWVLV---------------DDQFQEKKWKDIRVGEIIK 196 (1178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc------CcEEEEEE---------------CCeEEEEeHHHCCCCCEEE
Confidence 34456677888888999999999999988764 45677777 7889999999999999999
Q ss_pred ECCCCeeeeeEEEEe-----eceEEeeccccCCCceeeccCCCc------------------------------------
Q 002770 356 VLPGETIPVDGRVLA-----GRSVVDESMLSGESLPVFKEEGFT------------------------------------ 394 (883)
Q Consensus 356 v~~Ge~IPaDg~vl~-----G~~~Vdes~LTGEs~pv~K~~g~~------------------------------------ 394 (883)
|++||+|||||+|++ |.+.|||+.|||||.|+.|.+++.
T Consensus 197 v~~ge~iPaD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~ 276 (1178)
T PLN03190 197 IQANDTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGK 276 (1178)
T ss_pred ECCCCEeeeeEEEEeccCCCceEEEEccccCCeeeeeEecccchhhhcchhhhhceEEEEEeCCCccceeEEEEEEECCC
Confidence 999999999999997 889999999999999999976521
Q ss_pred ---------cccceeeecC-cEEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 002770 395 ---------VSAGTINWDG-PLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYY 464 (883)
Q Consensus 395 ---------v~aGt~~~~G-~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~ 464 (883)
++.|+.+.+. .+.+.|++||.+|. ++.....+..+++++++..+++..+++.+.++++++..++..+
T Consensus 277 ~~~l~~~n~llRG~~LrnT~~i~GvVVYTG~dTK---~~~N~~~~~~K~S~le~~~N~~vi~l~~i~~~l~~i~~i~~~~ 353 (1178)
T PLN03190 277 RLSLGPSNIILRGCELKNTAWAIGVAVYCGRETK---AMLNNSGAPSKRSRLETRMNLEIIILSLFLIALCTIVSVCAAV 353 (1178)
T ss_pred cccCCccceeeccceecCCceEEEEEEEechhhh---HhhcCCCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2233333332 58999999999996 4444444557889999999999888776666666555444322
Q ss_pred HhcCc------ccchhccccCCC---C----C--chHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHhc------
Q 002770 465 IGSQI------FPDVLLSDMAGP---N----G--NPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQ------ 523 (883)
Q Consensus 465 ~~~~~------~~~~~~~~~~~~---~----~--~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~~------ 523 (883)
+.... .+++........ . + ...+..+...+.++-..+|.+|...+.+........+.+.
T Consensus 354 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~lil~~~~IPISL~Vtleivk~~qa~~I~~D~~m~~~ 433 (1178)
T PLN03190 354 WLRRHRDELDTIPFYRRKDFSEGGPKNYNYYGWGWEIFFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDDQMYDE 433 (1178)
T ss_pred hhccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhhcceeeeeeHHHHHHHHHHHHHhhhhcccc
Confidence 21100 011100000000 0 0 0112334444556668899999998888875534444332
Q ss_pred ----CceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccC--C-------------------------------C
Q 002770 524 ----GLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFV--Y-------------------------------D 566 (883)
Q Consensus 524 ----gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~--~-------------------------------~ 566 (883)
++.+|+.+..|+||+|++||+|||||||+|+|.+.++...+ | +
T Consensus 434 ~~~~~~~vr~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (1178)
T PLN03190 434 ASNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSDGRTPTQNDHAGYSVEVDGKILRPKMKVKVD 513 (1178)
T ss_pred cCCCcceeccCcchhhhccceEEEEcCCCccccceEEEEEEEECCEEcccccccchhhhhccccccccccccccccccCC
Confidence 37899999999999999999999999999999999874310 0 0
Q ss_pred -------------h-----HHHH---HHHHHh-----h-----------hccCChHHHHHHHHHHhcCCCCCCC------
Q 002770 567 -------------E-----SEIL---KIAAAV-----E-----------KTATHPIAKAIVNKAESLNLTSPIT------ 603 (883)
Q Consensus 567 -------------~-----~~~l---~~~a~~-----e-----------~~s~hPi~~Ai~~~~~~~~~~~~~~------ 603 (883)
+ .+++ .++..+ + ..+.+|.+.|++.+|+..|+.+...
T Consensus 514 ~~~~~~~~~~~~~~~~~~i~~fl~~lalChtv~~~~~~~~~~~~~~~~~Y~a~SPdE~ALv~~a~~~G~~l~~r~~~~i~ 593 (1178)
T PLN03190 514 PQLLELSKSGKDTEEAKHVHDFFLALAACNTIVPIVVDDTSDPTVKLMDYQGESPDEQALVYAAAAYGFMLIERTSGHIV 593 (1178)
T ss_pred HHHHhhhhccccchhhHHHHHHHHHHHhcCCceeeccCCCCCccccceEEecCCCcHHHHHHHHHHCCCeEecccCCeEE
Confidence 0 0111 112111 1 2345899999999999988631110
Q ss_pred -------------cCcccccCceEEEEE----CC--EEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCC
Q 002770 604 -------------RGQLAEPGFGILGEV----DG--RLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNY 664 (883)
Q Consensus 604 -------------~~~~~~~g~g~~~~~----~g--~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (883)
..++..+.+..+..+ ++ ..++||+++.|.++|.............+. ...++.+
T Consensus 594 i~~~~~~~~~~il~~~pF~S~rKrMSvIv~~~~~~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~-------l~~~a~~ 666 (1178)
T PLN03190 594 IDIHGERQRFNVLGLHEFDSDRKRMSVILGCPDKTVKVFVKGADTSMFSVIDRSLNMNVIRATEAH-------LHTYSSL 666 (1178)
T ss_pred EeeccceecceeEEEecccccccEEEEEEEcCCCcEEEEEecCcHHHHHhhcccccchhHHHHHHH-------HHHHHhc
Confidence 011222233333332 22 467999999999998653222211222222 2234566
Q ss_pred CCeEEEEEe-------------------------------------cCceEEEEEEecCCCChhHHHHHHHHHHCCCEEE
Q 002770 665 SKSVVYVGR-------------------------------------EGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTL 707 (883)
Q Consensus 665 g~~~~~~a~-------------------------------------~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~ 707 (883)
|.|++.+|+ .++.++|+++++|++|++++++|+.|+++|++++
T Consensus 667 GlRtL~lA~k~l~~~e~~~~~~~~~~a~~~~~~r~~~l~~~~~~iE~dL~~lG~~~~~D~lr~~v~~~I~~l~~agi~v~ 746 (1178)
T PLN03190 667 GLRTLVVGMRELNDSEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILGASAIEDKLQQGVPEAIESLRTAGIKVW 746 (1178)
T ss_pred CCceEEEEEEeCCHHHHhhHHHHHHHhhhhhhhhHHHHHhhHHhhhcCcEEEEEEEEecCCchhHHHHHHHHHHCCCEEE
Confidence 777777663 2456899999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHcCCC------------------------------------------------------------
Q 002770 708 LLSGDREEAVAATAKEVGIG------------------------------------------------------------ 727 (883)
Q Consensus 708 ~lTGd~~~~a~~ia~~~gi~------------------------------------------------------------ 727 (883)
|+|||+..+|.++|+.+||-
T Consensus 747 mlTGD~~~tAi~IA~s~~Ll~~~~~~i~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVIdG~~ 826 (1178)
T PLN03190 747 VLTGDKQETAISIGYSSKLLTNKMTQIIINSNSKESCRKSLEDALVMSKKLTTVSGISQNTGGSSAAASDPVALIIDGTS 826 (1178)
T ss_pred EECCCCHHHHHHHHHHhCCCCCCCeeEEecCCchhhHHHHHHHHhhhhhhccccccccccccccccccCCceEEEEEcHH
Confidence 99999999999999977661
Q ss_pred -----C---------------ceEEEecCccchHHHHHHHhhc-CCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHH
Q 002770 728 -----K---------------EYINSSLTPQQKSEVISTLQTS-GHHVAMVGDGINDAPSLALADVGIALQIEAQENAAS 786 (883)
Q Consensus 728 -----~---------------~~v~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~ 786 (883)
+ ..++||++|+||.++|+.+|+. ++.|+|+|||.||++||++|||||++.|.+|. .|.
T Consensus 827 L~~~l~~~~~~~f~~l~~~~~~VI~cR~sP~QKa~IV~~vk~~~~~vtlaIGDGaNDv~mIq~AdVGIGIsG~EG~-qA~ 905 (1178)
T PLN03190 827 LVYVLDSELEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGR-QAV 905 (1178)
T ss_pred HHHHhhhHHHHHHHHHHHhCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEECCCcchHHHHHhcCeeeeecCchhH-HHH
Confidence 0 0268999999999999999997 57899999999999999999999998655555 577
Q ss_pred hhcCEEEeCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 787 TAASIILLGNKLSQVVDALD-LAKATMAKVYQNLSWAVAYNVVAIPI 832 (883)
Q Consensus 787 ~~ad~vl~~~~~~~l~~~i~-~~r~~~~~i~~n~~~a~~~n~~~i~l 832 (883)
.+||+.+.. |..|.+++- +||..|+++-+-+.|.+.-|++.+..
T Consensus 906 ~aSDfaI~~--Fr~L~rLLlvHGr~~y~R~s~~i~y~fYKN~~~~~~ 950 (1178)
T PLN03190 906 MASDFAMGQ--FRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLV 950 (1178)
T ss_pred Hhhccchhh--hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999955 999998777 69999999999999999999865544
No 31
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-50 Score=448.26 Aligned_cols=436 Identities=23% Similarity=0.266 Sum_probs=319.6
Q ss_pred HHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECC---CCeeeeeEEEEeece
Q 002770 297 RARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLP---GETIPVDGRVLAGRS 373 (883)
Q Consensus 297 ~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~---Ge~IPaDg~vl~G~~ 373 (883)
++|.|+...++. +..-|.+..++| +++|+.+.++||.|||+|.|.. ...||||.+++.|.|
T Consensus 236 ~Qrm~~lse~R~-Mg~kpy~I~v~R---------------~kKW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~Gsc 299 (1160)
T KOG0209|consen 236 KQRMRTLSEFRT-MGNKPYTINVYR---------------NKKWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLRGSC 299 (1160)
T ss_pred HHHHHHHHHHHh-cCCCceEEEEEe---------------cCcceeccccccCCCceEEeccCcccCcCCceEEEEecce
Confidence 455555444443 233455566666 8999999999999999999998 457999999999999
Q ss_pred EEeeccccCCCceeeccC-------------CC----ccccceeee-------------cCcEEEEEEeecCccchhhhh
Q 002770 374 VVDESMLSGESLPVFKEE-------------GF----TVSAGTINW-------------DGPLRIEACSTGSNSMISKIV 423 (883)
Q Consensus 374 ~Vdes~LTGEs~pv~K~~-------------g~----~v~aGt~~~-------------~G~~~~~v~~~g~~T~~~~i~ 423 (883)
.|||+||||||.|..|++ +| .+|+||.+. +|.+.+.|.+||.+|..|+++
T Consensus 300 iVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~VlrTGFeTSQGkLv 379 (1160)
T KOG0209|consen 300 IVNEAMLTGESVPLMKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYVLRTGFETSQGKLV 379 (1160)
T ss_pred eechhhhcCCCccccccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEEEeccccccCCcee
Confidence 999999999999999976 11 479999886 688999999999999999999
Q ss_pred hhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhccc
Q 002770 424 SMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPC 503 (883)
Q Consensus 424 ~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~ 503 (883)
|.+-...++-+.- |+-+.+|+.+.++++++. .||.|....- .....-.+-+.-.+-++...+|.
T Consensus 380 Rtilf~aervTaN----n~Etf~FILFLlVFAiaA--a~Yvwv~Gsk----------d~~RsrYKL~LeC~LIlTSVvPp 443 (1160)
T KOG0209|consen 380 RTILFSAERVTAN----NRETFIFILFLLVFAIAA--AGYVWVEGSK----------DPTRSRYKLFLECTLILTSVVPP 443 (1160)
T ss_pred eeEEecceeeeec----cHHHHHHHHHHHHHHHHh--hheEEEeccc----------CcchhhhheeeeeeEEEeccCCC
Confidence 9887755544432 222233443333333332 2332211100 00011222344455566777899
Q ss_pred ccchhHHHHHHHHHHHHHhcCceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccCCC-----------hH--HH
Q 002770 504 ALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYD-----------ES--EI 570 (883)
Q Consensus 504 aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~~~-----------~~--~~ 570 (883)
-|++-..+|+-..+..++|.||.|..+-.+.-.|++|.+|||||||||+..|.|.++.....+ .+ .+
T Consensus 444 ELPmELSmAVNsSL~ALak~~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~~~~~~~~~~~s~~p~~t~~v 523 (1160)
T KOG0209|consen 444 ELPMELSMAVNSSLIALAKLGVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGLSADEGALTPASKAPNETVLV 523 (1160)
T ss_pred CCchhhhHHHHHHHHHHHHhceeecCccccccCCceeEEEecCCCccccccEEEEecccccCCcccccchhhCCchHHHH
Confidence 999988888888888899999999999999999999999999999999999999998652111 11 23
Q ss_pred HHHHHHh---h-hccCChHHHHHHHHHHhcCCCCCCCcCcccccCceE-----------------EEEEC-------CEE
Q 002770 571 LKIAAAV---E-KTATHPIAKAIVNKAESLNLTSPITRGQLAEPGFGI-----------------LGEVD-------GRL 622 (883)
Q Consensus 571 l~~~a~~---e-~~s~hPi~~Ai~~~~~~~~~~~~~~~~~~~~~g~g~-----------------~~~~~-------g~~ 622 (883)
++-++++ | .-..+|+++|.++...+. +............++++ .+..+ -..
T Consensus 524 lAscHsLv~le~~lVGDPlEKA~l~~v~W~-~~k~~~v~p~~~~~~~lkI~~ryhFsSaLKRmsvva~~~~~g~s~k~~~ 602 (1160)
T KOG0209|consen 524 LASCHSLVLLEDKLVGDPLEKATLEAVGWN-LEKKNSVCPREGNGKKLKIIQRYHFSSALKRMSVVASHQGPGSSEKYFV 602 (1160)
T ss_pred HHHHHHHHHhcCcccCChHHHHHHHhcCcc-cccCcccCCCcCCCcccchhhhhhHHHHHHHHHhhhhcccCCCceEEEE
Confidence 4444443 2 345799999999876331 11000000011111111 11111 123
Q ss_pred EEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEEec--------------------CceEEEEE
Q 002770 623 VAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGRE--------------------GEGIIGAI 682 (883)
Q Consensus 623 ~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~--------------------~~~~lG~i 682 (883)
..||+||.+.++..+.+. +.+ +.+.+ +..+|.+++++++. ++.|.|++
T Consensus 603 aVKGAPEvi~~ml~dvP~--dY~---~iYk~-------ytR~GsRVLALg~K~l~~~~~~q~rd~~Re~vEsdLtFaGFl 670 (1160)
T KOG0209|consen 603 AVKGAPEVIQEMLRDVPK--DYD---EIYKR-------YTRQGSRVLALGYKPLGDMMVSQVRDLKREDVESDLTFAGFL 670 (1160)
T ss_pred EecCCHHHHHHHHHhCch--hHH---HHHHH-------HhhccceEEEEecccccccchhhhhhhhhhhhhhcceeeeeE
Confidence 479999999998876543 222 22222 35678888888862 34699999
Q ss_pred EecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC----------------------------------
Q 002770 683 AISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK---------------------------------- 728 (883)
Q Consensus 683 ~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~---------------------------------- 728 (883)
.|..|+|+|++++|+.|++.+++++|+||||+.||.++|+++||..
T Consensus 671 if~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~p~~ 750 (1160)
T KOG0209|consen 671 IFSCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLKPGK 750 (1160)
T ss_pred EEeCCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeeeccCceeeccCccCCCceeeEecCCCceeecCCCCc
Confidence 9999999999999999999999999999999999999999999810
Q ss_pred ---------------------------------ceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEE
Q 002770 729 ---------------------------------EYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIA 775 (883)
Q Consensus 729 ---------------------------------~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa 775 (883)
..+|||+.|.||..+|..|++.|+.++|+|||.||+.||++||||||
T Consensus 751 ~~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGDGTNDVGALK~AhVGVA 830 (1160)
T KOG0209|consen 751 KKTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGDGTNDVGALKQAHVGVA 830 (1160)
T ss_pred cchhhhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHHhcCeEEEEecCCCcchhhhhhccccee
Confidence 15899999999999999999999999999999999999999999999
Q ss_pred ee
Q 002770 776 LQ 777 (883)
Q Consensus 776 ~~ 777 (883)
+-
T Consensus 831 LL 832 (1160)
T KOG0209|consen 831 LL 832 (1160)
T ss_pred hh
Confidence 84
No 32
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-45 Score=405.63 Aligned_cols=487 Identities=22% Similarity=0.284 Sum_probs=350.8
Q ss_pred cCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCC
Q 002770 273 WDASFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGD 352 (883)
Q Consensus 273 ~~~~~f~~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GD 352 (883)
+..+|+....+++++.++.+++|++.|.+..+..++ +.-++.. |||...+ |+++|++||
T Consensus 127 ~l~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Ns------e~y~~lt--------------r~~~~~~-~Ss~i~vGD 185 (1051)
T KOG0210|consen 127 YLSTYWGPLGFVLTITLIKEAVDDLKRRRRDRELNS------EKYTKLT--------------RDGTRRE-PSSDIKVGD 185 (1051)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhheeec--------------cCCcccc-ccccccccc
Confidence 345677778889999999999999999887776654 2222322 1444333 999999999
Q ss_pred EEEECCCCeeeeeEEEE-----eeceEEeeccccCCCceeeccC------------------------------------
Q 002770 353 SVLVLPGETIPVDGRVL-----AGRSVVDESMLSGESLPVFKEE------------------------------------ 391 (883)
Q Consensus 353 iV~v~~Ge~IPaDg~vl-----~G~~~Vdes~LTGEs~pv~K~~------------------------------------ 391 (883)
+|++..+++||||.+++ +|++.|-+..|+||+.++.|-|
T Consensus 186 vi~v~K~~RVPADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~ 265 (1051)
T KOG0210|consen 186 VIIVHKDERVPADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTI 265 (1051)
T ss_pred EEEEecCCcCCcceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEE
Confidence 99999999999999999 4789999999999998887722
Q ss_pred -----------CCccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHH
Q 002770 392 -----------GFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFA 460 (883)
Q Consensus 392 -----------g~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~ 460 (883)
.+.++|+|++.+|.+.+.|++||.+|.-. + .-..++.+-..++..++.+.+.+...+++++++...
T Consensus 266 ~d~~~~~~LsventLWanTVvAs~t~~gvVvYTG~dtRsv--M-Nts~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~ 342 (1051)
T KOG0210|consen 266 TDSDKPESLSVENTLWANTVVASGTAIGVVVYTGRDTRSV--M-NTSRPRSKVGLLELEINGLTKILFCFVLVLSIVMVA 342 (1051)
T ss_pred ecCCCCCcccccceeeeeeeEecCcEEEEEEEecccHHHH--h-ccCCcccccceeeeecccHHHHHHHHHHHHHHHHHH
Confidence 24689999999999999999999998532 1 112233344455666777777777777777665433
Q ss_pred HHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHh----cCceecCchHHhhh
Q 002770 461 FWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAK----QGLLIRGGDVLERL 536 (883)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~a~----~gilvk~~~~lE~l 536 (883)
.- ..+..|...+.+++.++...+|..|-.-.-++-..-.....+ .|.++|+....|+|
T Consensus 343 ~~------------------g~~~~wyi~~~RfllLFS~IIPISLRvnlDmaK~~ys~~i~~D~~IpgtvvRSstIPEeL 404 (1051)
T KOG0210|consen 343 MK------------------GFGSDWYIYIIRFLLLFSSIIPISLRVNLDMAKIVYSWQIEHDKNIPGTVVRSSTIPEEL 404 (1051)
T ss_pred hh------------------cCCCchHHHHHHHHHHHhhhceeEEEEehhHHHhhHhhhcccCCCCCceeeecCCChHHh
Confidence 21 122445566888888888888998877777776554444432 48899999999999
Q ss_pred ccCcEEEecCcccccCCceEEEEEecc--CCChH---HHH------------------------------------HHHH
Q 002770 537 ARIDYLALDKTGTLTEGKPAVFNVASF--VYDES---EIL------------------------------------KIAA 575 (883)
Q Consensus 537 g~v~~i~fDKTGTLT~~~~~v~~v~~~--~~~~~---~~l------------------------------------~~~a 575 (883)
|+|.++.+|||||||+|+|.+++++.. .++.+ ++- ++++
T Consensus 405 GRIsylLtDKTGTLTqNEM~~KKiHLGTv~~s~e~~~eV~~~i~s~~~~~~~~~~~~~~~~k~~~s~rv~~~V~alalCH 484 (1051)
T KOG0210|consen 405 GRISYLLTDKTGTLTQNEMEFKKIHLGTVAYSAETMDEVSQHIQSLYTPGRNKGKGALSRVKKDMSARVRNAVLALALCH 484 (1051)
T ss_pred cceEEEEecCcCccccchheeeeeeeeeeeccHhHHHHHHHHHHHhhCCCcccccccchhhcCcccHHHHHHHHHHHHhc
Confidence 999999999999999999999988543 22211 111 1111
Q ss_pred H----------hhhccCChHHHHHHHHHHhcCCCCCC------------Cc----------Ccc-cccCceEEEEEC--C
Q 002770 576 A----------VEKTATHPIAKAIVNKAESLNLTSPI------------TR----------GQL-AEPGFGILGEVD--G 620 (883)
Q Consensus 576 ~----------~e~~s~hPi~~Ai~~~~~~~~~~~~~------------~~----------~~~-~~~g~g~~~~~~--g 620 (883)
. +.+.+.+|.+.||+++.+..|+.+.. .. .+. +....|+....+ +
T Consensus 485 NVTPv~e~~ge~sYQAaSPDEVAiVkwTe~VGl~L~~Rd~~~itL~~~~~~~~~yqIL~vFPFtsEtKRMGIIVr~e~~~ 564 (1051)
T KOG0210|consen 485 NVTPVFEDDGEVSYQAASPDEVAIVKWTETVGLKLAKRDRHAITLRVPLDDELNYQILQVFPFTSETKRMGIIVRDETTE 564 (1051)
T ss_pred cCCcccCCCceEEeecCCCCeEEEEEeeeecceEEeecccceEEEecCCCcceeEEEEEEeccccccceeeEEEecCCCc
Confidence 1 11234466677777666655543110 00 000 111234433333 2
Q ss_pred --EEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEEec------------------------
Q 002770 621 --RLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGRE------------------------ 674 (883)
Q Consensus 621 --~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~------------------------ 674 (883)
..+.||+...|...-...+ +. .++-..++.+|.+.+.+|..
T Consensus 565 evtfylKGAD~VMs~iVq~Nd----------Wl---eEE~gNMAREGLRtLVvakK~Ls~~eye~Fe~~y~~A~lSi~dR 631 (1051)
T KOG0210|consen 565 EVTFYLKGADVVMSGIVQYND----------WL---EEECGNMAREGLRTLVVAKKVLSEEEYEAFEEAYNAAKLSISDR 631 (1051)
T ss_pred eEEEEEecchHHHhcccccch----------hh---hhhhhhhhhhcceEEEEEecccCHHHHHHHHHHHHhhhCccchH
Confidence 3568898766643222111 11 11122234566666666651
Q ss_pred --------------CceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC-------------
Q 002770 675 --------------GEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIG------------- 727 (883)
Q Consensus 675 --------------~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~------------- 727 (883)
+..++|+.+.||+++++++.+++.||++|||+||+|||..++|..+|+..++-
T Consensus 632 ~~~ma~vv~~~LE~dlelL~LTGVEDkLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~ 711 (1051)
T KOG0210|consen 632 DQKMANVVERYLERDLELLGLTGVEDKLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVT 711 (1051)
T ss_pred HHHHHHHHHHHHHhhhHHhcccChHHHHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecC
Confidence 22489999999999999999999999999999999999999999999999871
Q ss_pred ---------------------------------------------CceEEEecCccchHHHHHHHhhc-CCeEEEEcCCc
Q 002770 728 ---------------------------------------------KEYINSSLTPQQKSEVISTLQTS-GHHVAMVGDGI 761 (883)
Q Consensus 728 ---------------------------------------------~~~v~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~ 761 (883)
...++||++|+||+++++.+|+. |.+|++||||.
T Consensus 712 sr~dah~eL~~lR~k~~~aLvi~G~Sl~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~krvc~IGDGG 791 (1051)
T KOG0210|consen 712 SRGDAHNELNNLRRKTDCALVIDGESLEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTGKRVCAIGDGG 791 (1051)
T ss_pred CchHHHHHHHHhhcCCCcEEEEcCchHHHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhCceEEEEcCCC
Confidence 11588999999999999999986 88999999999
Q ss_pred cCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHH-HHHHHHHHHH
Q 002770 762 NDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDL-AKATMAKVYQ 817 (883)
Q Consensus 762 ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~-~r~~~~~i~~ 817 (883)
||+.|+++||+||++-+.+|. .|.-+||+-+.. ++.+.+++-+ ||..|++--+
T Consensus 792 NDVsMIq~A~~GiGI~gkEGk-QASLAADfSItq--F~Hv~rLLl~HGR~SYkrsa~ 845 (1051)
T KOG0210|consen 792 NDVSMIQAADVGIGIVGKEGK-QASLAADFSITQ--FSHVSRLLLWHGRNSYKRSAK 845 (1051)
T ss_pred ccchheeecccceeeeccccc-ccchhccccHHH--HHHHHHHhhccccchHHHHHH
Confidence 999999999999999766665 466789998865 9999988776 8888876443
No 33
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=390.80 Aligned_cols=521 Identities=18% Similarity=0.215 Sum_probs=374.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEE
Q 002770 276 SFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVL 355 (883)
Q Consensus 276 ~~f~~~~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~ 355 (883)
+.....++++.+..+.+.+|++.|.+.++.++. .++.+.+. ++..++...++|++||+|.
T Consensus 82 ~~~~pl~~vl~~t~iKd~~eD~rR~~~D~~iN~------~~~~v~~~--------------~~~~~~~~wk~~~vGd~v~ 141 (1151)
T KOG0206|consen 82 TTLVPLLFVLGITAIKDAIEDYRRHKQDKEVNN------RKVEVLRG--------------DGCFVEKKWKDVRVGDIVR 141 (1151)
T ss_pred ceeeceeeeehHHHHHHHHhhhhhhhccHHhhc------ceeEEecC--------------CceeeeeccceeeeeeEEE
Confidence 334455677778889999999999998887765 35566652 2237899999999999999
Q ss_pred ECCCCeeeeeEEEEe-----eceEEeeccccCCCceeeccC---------------------------------------
Q 002770 356 VLPGETIPVDGRVLA-----GRSVVDESMLSGESLPVFKEE--------------------------------------- 391 (883)
Q Consensus 356 v~~Ge~IPaDg~vl~-----G~~~Vdes~LTGEs~pv~K~~--------------------------------------- 391 (883)
+..+|.+|||.++++ |.|+|++++|+||+..+.|+.
T Consensus 142 v~~~~~~paD~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~~~ly~f~g~l~~~ 221 (1151)
T KOG0206|consen 142 VEKDEFVPADLLLLSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPNANLYTFVGNLELQ 221 (1151)
T ss_pred eccCCccccceEEecCCCCCceeEEEEeecCCccccceeeehhhhhcccccccccccCCceEEcCCcccHhhhhhheeec
Confidence 999999999999995 669999999999998887742
Q ss_pred --------CCccccceeeecCc-EEEEEEeecCccchhhhhhhhHhhhCCCChhHHHHHHhchhHHHHHHHHHHHHHHHH
Q 002770 392 --------GFTVSAGTINWDGP-LRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFW 462 (883)
Q Consensus 392 --------g~~v~aGt~~~~G~-~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~q~~~d~~~~~~~~~vl~~~~~~~~~~ 462 (883)
.+.++.|+.+.+.. +.+.|+.+|.+|.+. +....+..+++++++..++....++.+.++++++..+..
T Consensus 222 ~~~~pl~~~~~Llrg~~lrNT~~v~G~vv~tG~dtK~~---~n~~~~~~Krs~ier~~n~~i~~~~~~l~~~~~~~~i~~ 298 (1151)
T KOG0206|consen 222 GQIYPLSPDNLLLRGSRLRNTEWVYGVVVFTGHDTKLM---QNSGKPPSKRSRIERKMNKIIILLFVLLILMCLISAIGF 298 (1151)
T ss_pred cCCCCCcHHHcccCCceeccCcEEEEEEEEcCCcchHH---HhcCCCccccchhhhhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 11255677777654 788999999999554 455557788999999999887777666666555544432
Q ss_pred HHHhc---CcccchhccccCCC-CCchHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHH----------HhcCceec
Q 002770 463 YYIGS---QIFPDVLLSDMAGP-NGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLG----------AKQGLLIR 528 (883)
Q Consensus 463 ~~~~~---~~~~~~~~~~~~~~-~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~----------a~~gilvk 528 (883)
.++.. ...+..+.. ... ........+..++.++...+|..|-..+-+.-....... ......+|
T Consensus 299 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~f~t~~il~~~liPISLyvsiEiik~~qs~fi~~D~~my~~e~d~~~~~r 376 (1151)
T KOG0206|consen 299 AIWTRQDGRHNGEWWYL--SPSEAAYAGFVHFLTFIILYQYLIPISLYVSIEIVKVLQSIFINNDLDMYDEETDTPAQAR 376 (1151)
T ss_pred heeeeecccccCchhhh--cCchHHHHHHHHHHHHHhhhhceEEEEEEEEeeehHHHHHHHcchHHHhhhccCCCccccc
Confidence 22221 111111110 111 111234556777788888899999877665544332221 24578899
Q ss_pred CchHHhhhccCcEEEecCcccccCCceEEEEEeccC------CCh-----------------------------------
Q 002770 529 GGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFV------YDE----------------------------------- 567 (883)
Q Consensus 529 ~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~------~~~----------------------------------- 567 (883)
+.+.-|.||+|++|+.|||||||+|.|.+.++...+ .++
T Consensus 377 tsnl~eeLGqv~yIfSDKTGTLT~N~M~F~kCsi~g~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 456 (1151)
T KOG0206|consen 377 TSNLNEELGQVEYIFSDKTGTLTQNSMEFKKCSINGTSYGRNVTEVEAALAKRSGGDVNEHKIKGFTFEDSRLVDGLWSS 456 (1151)
T ss_pred cCCchhhhcceeEEEEcCcCccccceeeeecccccCcccccCCChhhcccCccccccccccccccceeccchhhcccccc
Confidence 999999999999999999999999999998874431 000
Q ss_pred -------HH---HHHHHHH-----------hhhccCChHHHHHHHHHHhcCCCCCCC-cCcccccCce------------
Q 002770 568 -------SE---ILKIAAA-----------VEKTATHPIAKAIVNKAESLNLTSPIT-RGQLAEPGFG------------ 613 (883)
Q Consensus 568 -------~~---~l~~~a~-----------~e~~s~hPi~~Ai~~~~~~~~~~~~~~-~~~~~~~g~g------------ 613 (883)
.+ .++++.. +.+.+..|.+.|+++.|++.|+..... .+.....+.|
T Consensus 457 ~~~~~~~~~f~~~la~chtv~~e~~~~~~~~~Y~A~SPDE~AlV~aAr~~gf~f~~Rt~~~vti~~~g~~~~y~lL~iLe 536 (1151)
T KOG0206|consen 457 EPQAEDILEFFRALALCHTVIPEKDEDSGKLSYEAESPDEAALVEAARELGFVFLGRTPDSVTIRELGVEETYELLNVLE 536 (1151)
T ss_pred ccCcchHHHHhhHHhccceeeeccCCCccceeeecCCCcHHHHHHHHHhcCceeeeccCceEEEeccccceeEEEEEEec
Confidence 01 1222221 233467899999999999988764221 1111111222
Q ss_pred -------EEEEE---CC--EEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEEe--------
Q 002770 614 -------ILGEV---DG--RLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGR-------- 673 (883)
Q Consensus 614 -------~~~~~---~g--~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~-------- 673 (883)
++..+ +| ..++||+...+.+++....... ..... .+...++.+|.+.+++|+
T Consensus 537 F~S~RKRMSVIVR~p~g~i~LycKGADsvI~erL~~~~~~~-~e~T~-------~Hl~~yA~eGLRTLc~A~r~l~e~eY 608 (1151)
T KOG0206|consen 537 FNSTRKRMSVIVRDPDGRILLYCKGADSVIFERLSKNGEKL-REKTQ-------EHLEEYATEGLRTLCLAYRELDEEEY 608 (1151)
T ss_pred cccccceeEEEEEcCCCcEEEEEcCcchhhHhhhhhcchHH-HHHHH-------HHHHHHHhhhhhHhhhhhhccCHHHH
Confidence 11111 12 4689999999999987522111 11111 122334566777777765
Q ss_pred -----------------------------cCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHc
Q 002770 674 -----------------------------EGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEV 724 (883)
Q Consensus 674 -----------------------------~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~ 724 (883)
+++.++|..++||+++++++++|+.|+++|||+||+|||..+||..++-.|
T Consensus 609 ~~w~~~~~~A~ts~~~Re~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC 688 (1151)
T KOG0206|consen 609 EEWNERYNEAKTSLTDREELLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSC 688 (1151)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHhcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhh
Confidence 345689999999999999999999999999999999999999999999888
Q ss_pred CCC------------C-----------------------------------c----------------------------
Q 002770 725 GIG------------K-----------------------------------E---------------------------- 729 (883)
Q Consensus 725 gi~------------~-----------------------------------~---------------------------- 729 (883)
++- . .
T Consensus 689 ~Ll~~~m~~i~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~aLVIDGktl~~aL~~~~~~~Fl~la~~ 768 (1151)
T KOG0206|consen 689 RLLRQDMKLIIINTETSEELSSLDATAALKETLLRKFTEELEEAKLEHSEKPFALVIDGKTLAYALEDELRKKFLELAKR 768 (1151)
T ss_pred cCCCCCceEEEEecCChhhhcchhhHHHHHHHHHHhhhHHHHHHhhccCcCCceEEEECHHHHhhhCchhhHHHHHHHHh
Confidence 761 0 0
Q ss_pred ---eEEEecCccchHHHHHHHhh-cCCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHH
Q 002770 730 ---YINSSLTPQQKSEVISTLQT-SGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDAL 805 (883)
Q Consensus 730 ---~v~~~~~p~~K~~~v~~l~~-~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i 805 (883)
.++||++|.||+.+++..++ .+..+++||||.||++|++.|||||+++|.+|.+ |..++|+-+.. +.-+.+++
T Consensus 769 C~sViCCR~sPlQKA~Vv~lVk~~~~~~TLAIGDGANDVsMIQ~AhVGVGIsG~EGmQ-AvmsSD~AIaq--FrfL~rLL 845 (1151)
T KOG0206|consen 769 CKSVICCRVSPLQKALVVKLVKKGLKAVTLAIGDGANDVSMIQEAHVGVGISGQEGMQ-AVMSSDFAIAQ--FRFLERLL 845 (1151)
T ss_pred cCEEEEccCCHHHHHHHHHHHHhcCCceEEEeeCCCccchheeeCCcCeeeccchhhh-hhhcccchHHH--HHHHhhhh
Confidence 46889999999999999974 4789999999999999999999999998767764 55788887755 55555543
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 806 -DLAKATMAKVYQNLSWAVAYNVVAIPI 832 (883)
Q Consensus 806 -~~~r~~~~~i~~n~~~a~~~n~~~i~l 832 (883)
-+||..|.++.+.+.+.+..|+.....
T Consensus 846 LVHGhW~Y~R~a~~ilyfFYKNi~f~~~ 873 (1151)
T KOG0206|consen 846 LVHGHWSYIRLAKMILYFFYKNIAFTFT 873 (1151)
T ss_pred eeecceeHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999865544
No 34
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=2.4e-34 Score=302.94 Aligned_cols=223 Identities=27% Similarity=0.502 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-eEEEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEECCCCe
Q 002770 283 MLLGFVLLGRSLEERARIRASSDMNELLSLVSTQ-SRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGET 361 (883)
Q Consensus 283 ~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~-~~v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~ 361 (883)
+++++++++.+++.+.+.|+.+.+++|.+..+++ ++++| ||++++++++||+|||+|.+++||+
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r---------------~~~~~~i~~~~L~~GDiI~l~~g~~ 65 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIR---------------DGRWQKIPSSELVPGDIIILKAGDI 65 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEE---------------TTEEEEEEGGGT-TTSEEEEETTEB
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEe---------------ccccccchHhhccceeeeecccccc
Confidence 4677888999999999999999999999988887 77777 8999999999999999999999999
Q ss_pred eeeeEEEEe-eceEEeeccccCCCceeecc-----CCCccccceeeecCcEEEEEEeecCccchhhhhhhhHhhhCCCCh
Q 002770 362 IPVDGRVLA-GRSVVDESMLSGESLPVFKE-----EGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAP 435 (883)
Q Consensus 362 IPaDg~vl~-G~~~Vdes~LTGEs~pv~K~-----~g~~v~aGt~~~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~ 435 (883)
+||||+|++ |.+.||||.+|||+.|+.|. .|+.+++||.+.+|.+.++|+++|.+|.++++.+.+.+.+.++++
T Consensus 66 vPaD~~ll~~g~~~vd~s~ltGes~pv~k~~~~~~~~~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~ 145 (230)
T PF00122_consen 66 VPADGILLESGSAYVDESALTGESEPVKKTPLPLNPGNIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSP 145 (230)
T ss_dssp ESSEEEEEESSEEEEECHHHHSBSSEEEESSSCCCTTTEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-TH
T ss_pred cccCccceeccccccccccccccccccccccccccccchhhccccccccccccccceeeecccccccccccccccccchh
Confidence 999999999 99999999999999999999 999999999999999999999999999999999999998888899
Q ss_pred hHHHHHHhchhHHHHHHHHHHHHHHHHHHHhcCcccchhccccCCCCCchHHHHHHHHHHHHhhhcccccchhHHHHHHH
Q 002770 436 IQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILV 515 (883)
Q Consensus 436 ~q~~~d~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~ 515 (883)
+++..+++..++++++++++++++++|++.. ....+...+..++++++++|||+|++++|+++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~ 210 (230)
T PF00122_consen 146 LERKLNKIAKILIIIILAIAILVFIIWFFND---------------SGISFFKSFLFAISLLIVLIPCALPLALPLSLAI 210 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTGS---------------TTCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhcccccchhhhccceecc---------------cccccccccccccceeeeecccceeehHHHHHHH
Confidence 9999999999999999888888877666531 1233456688899999999999999999999999
Q ss_pred HHHHHHhcCceecCchHHhh
Q 002770 516 GTSLGAKQGLLIRGGDVLER 535 (883)
Q Consensus 516 ~~~~~a~~gilvk~~~~lE~ 535 (883)
+..+++++|+++|+++++|.
T Consensus 211 ~~~~~~~~~i~v~~~~a~E~ 230 (230)
T PF00122_consen 211 AARRLAKNGIIVKNLSALEA 230 (230)
T ss_dssp HHHHHHHTTEEESSTTHHHH
T ss_pred HHHHHHHCCEEEeCcccccC
Confidence 99999999999999999995
No 35
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.95 E-value=3.6e-28 Score=252.70 Aligned_cols=211 Identities=36% Similarity=0.511 Sum_probs=172.4
Q ss_pred CcEEEecCcccccCCceEEEEEeccCCChHHHHHHHHHhhhccCChHHHHHHHHHHhcCCCCCCCcCcccccCceEEEEE
Q 002770 539 IDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTATHPIAKAIVNKAESLNLTSPITRGQLAEPGFGILGEV 618 (883)
Q Consensus 539 v~~i~fDKTGTLT~~~~~v~~v~~~~~~~~~~l~~~a~~e~~s~hPi~~Ai~~~~~~~~~~~~~~~~~~~~~g~g~~~~~ 618 (883)
|++||||||||||++++.+ .. .....++.++...++.+.||++.++..++...... +....+...+|.|+.+.+
T Consensus 1 i~~i~fDktGTLt~~~~~v---~~--~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV---AP--PSNEAALAIAAALEQGSEHPIGKAIVEFAKNHQWS-KSLESFSEFIGRGISGDV 74 (215)
T ss_dssp ESEEEEECCTTTBESHHEE---ES--CSHHHHHHHHHHHHCTSTSHHHHHHHHHHHHHHHH-SCCEEEEEETTTEEEEEE
T ss_pred CeEEEEecCCCcccCeEEE---Ee--ccHHHHHHHHHHhhhcCCCcchhhhhhhhhhccch-hhhhhheeeeeccccccc
Confidence 6899999999999999999 11 56788999999999999999999999988763211 115567788899999998
Q ss_pred CCEEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHH
Q 002770 619 DGRLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRS 698 (883)
Q Consensus 619 ~g~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~ 698 (883)
++. +. |+++++.+......... ...... ...+.+.+.++.+.. ++|.+.+.|++|++++++|++
T Consensus 75 ~~~-~~-g~~~~~~~~~~~~~~~~---~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~~ 138 (215)
T PF00702_consen 75 DGI-YL-GSPEWIHELGIRVISPD---LVEEIQ----------ESQGRTVIVLAVNLI-FLGLFGLRDPLRPGAKEALQE 138 (215)
T ss_dssp HCH-EE-HHHHHHHHHHHHHHHHH---HHHHHH----------HHHHHHCEEEEESHE-EEEEEEEEEEBHTTHHHHHHH
T ss_pred ccc-cc-ccchhhhhccccccccc---hhhhHH----------HhhCCcccceeecCe-EEEEEeecCcchhhhhhhhhh
Confidence 877 44 99999887654321000 000000 122334455555555 999999999999999999999
Q ss_pred HHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEec--Cccch--HHHHHHHhhcCCeEEEEcCCccCHHHHHhCC
Q 002770 699 LQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSL--TPQQK--SEVISTLQTSGHHVAMVGDGINDAPSLALAD 771 (883)
Q Consensus 699 L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~--~p~~K--~~~v~~l~~~g~~v~~vGDg~ND~~al~~Ad 771 (883)
|+++|++++|+|||+..++..+++++||.+..++++. +|++| .++++.|+.+++.|+|||||.||++|+++||
T Consensus 139 L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 139 LKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp HHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEESSGGHHHHHHHSS
T ss_pred hhccCcceeeeeccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEccCHHHHHHHHhCc
Confidence 9999999999999999999999999999877799999 99999 9999999977779999999999999999997
No 36
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.67 E-value=6.6e-16 Score=138.90 Aligned_cols=124 Identities=27% Similarity=0.419 Sum_probs=111.9
Q ss_pred EEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEE
Q 002770 678 IIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMV 757 (883)
Q Consensus 678 ~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~v 757 (883)
+.+.++---++=++++++|++|++. +++++.|||...+....|+-+||+.+.+++...|+.|.++++.|++.+++|+||
T Consensus 21 v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k~vmV 99 (152)
T COG4087 21 VLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEKVVMV 99 (152)
T ss_pred EEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcEEEEe
Confidence 7888888889999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCHHHHHhCCeeEEeec-CCccHHHHhhcCEEEeCCChhhHHHH
Q 002770 758 GDGINDAPSLALADVGIALQI-EAQENAASTAASIILLGNKLSQVVDA 804 (883)
Q Consensus 758 GDg~ND~~al~~AdvgIa~~~-~~~~~~a~~~ad~vl~~~~~~~l~~~ 804 (883)
|||.||.+||+.||+||..-+ .+.+..+.++||+++.+ +..+.++
T Consensus 100 GnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~--i~e~ldl 145 (152)
T COG4087 100 GNGANDILALREADLGICTIQQEGVPERLLLTADVVLKE--IAEILDL 145 (152)
T ss_pred cCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhhh--HHHHHHH
Confidence 999999999999999998743 35667788999999855 4444443
No 37
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.23 E-value=3.3e-11 Score=99.01 Aligned_cols=62 Identities=27% Similarity=0.521 Sum_probs=59.2
Q ss_pred EEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCc
Q 002770 75 LLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFE 145 (883)
Q Consensus 75 ~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~ 145 (883)
+|.|+||+|++|+++|+++|.++|||.++++|+.++++.|.|+++. .+++++.++|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~---------~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDK---------TSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTT---------SCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCC---------CCHHHHHHHHHHhCcC
Confidence 5899999999999999999999999999999999999999999887 6889999999999995
No 38
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.18 E-value=8.5e-11 Score=98.92 Aligned_cols=68 Identities=28% Similarity=0.483 Sum_probs=63.3
Q ss_pred eEEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcccc
Q 002770 72 STVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKR 148 (883)
Q Consensus 72 ~~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~ 148 (883)
.+..++|+||+|.+|+..|+++|++++||.++++++..+++.|.+++.. .+.+++.+++++.||++..
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~---------~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNK---------VDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCc---------CCHHHHHHHHHHcCCCeee
Confidence 4578999999999999999999999999999999999999999999976 6899999999999998753
No 39
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.10 E-value=4.6e-10 Score=115.26 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=98.1
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEE--------e-------cCccchHHHHHHHhhcC
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINS--------S-------LTPQQKSEVISTLQTSG 751 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~--------~-------~~p~~K~~~v~~l~~~g 751 (883)
++.|++.+.|+.+|+.| +++++||.....+..+++++|++ .+++ + ..+++|..+++.+++.|
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~--~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~ 144 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFP--TLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLY 144 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCc--hhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhC
Confidence 57999999999999975 99999999999999999999996 3332 1 34678999999998888
Q ss_pred CeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHH
Q 002770 752 HHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLA 808 (883)
Q Consensus 752 ~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~ 808 (883)
..+.|+|||.||.+|++.||+||++ ++.+..++.||=+-.-.+.+.+..++.++
T Consensus 145 ~~~v~vGDs~nDl~ml~~Ag~~ia~---~ak~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T TIGR02137 145 YRVIAAGDSYNDTTMLSEAHAGILF---HAPENVIREFPQFPAVHTYEDLKREFLKA 198 (203)
T ss_pred CCEEEEeCCHHHHHHHHhCCCCEEe---cCCHHHHHhCCCCCcccCHHHHHHHHHHH
Confidence 8899999999999999999999999 45667777777655556788888887776
No 40
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.07 E-value=8.1e-10 Score=121.09 Aligned_cols=115 Identities=22% Similarity=0.271 Sum_probs=99.4
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEe-----------------cCccchHHHHHHHhh
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSS-----------------LTPQQKSEVISTLQT 749 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~-----------------~~p~~K~~~v~~l~~ 749 (883)
++.|++.+.++.|++.|+++.++||.....+..+.+++|++ .++++ +..+.|.+.++.+.+
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld--~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLD--AAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCC--eEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 47899999999999999999999999988899999999996 33321 234679988888865
Q ss_pred c-C---CeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHH
Q 002770 750 S-G---HHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALD 806 (883)
Q Consensus 750 ~-g---~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~ 806 (883)
+ | +.+++||||.||.+|++.|++|||+ ++.+..++.||.++..++++++..++.
T Consensus 259 ~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~---nAkp~Vk~~Ad~~i~~~~l~~~l~~~~ 316 (322)
T PRK11133 259 EYEIPLAQTVAIGDGANDLPMIKAAGLGIAY---HAKPKVNEQAQVTIRHADLMGVLCILS 316 (322)
T ss_pred HcCCChhhEEEEECCHHHHHHHHHCCCeEEe---CCCHHHHhhCCEEecCcCHHHHHHHhc
Confidence 4 3 6899999999999999999999999 678899999999999999999987754
No 41
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.03 E-value=2.2e-09 Score=100.87 Aligned_cols=114 Identities=22% Similarity=0.336 Sum_probs=94.7
Q ss_pred HHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhc----CCeEEEEcCCccCHHHHHh
Q 002770 694 HTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTS----GHHVAMVGDGINDAPSLAL 769 (883)
Q Consensus 694 ~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~----g~~v~~vGDg~ND~~al~~ 769 (883)
-.|+.|.+.|+++.++||++...+..-|+++||. ++|-. -++|....+.|.++ .+.|+++||..||.|+|+.
T Consensus 42 ~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~--~~~qG--~~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~ 117 (170)
T COG1778 42 HGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIK--HLYQG--ISDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEK 117 (170)
T ss_pred HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCc--eeeec--hHhHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHH
Confidence 3588999999999999999999999999999997 67754 36888888877664 4689999999999999999
Q ss_pred CCeeEEeecCCccHHHHhhcCEEEeCCC----hhhHHHHHHHHHHHHH
Q 002770 770 ADVGIALQIEAQENAASTAASIILLGNK----LSQVVDALDLAKATMA 813 (883)
Q Consensus 770 AdvgIa~~~~~~~~~a~~~ad~vl~~~~----~~~l~~~i~~~r~~~~ 813 (883)
.++++|+ .++.+..++.||+|+..+. ...+.++|..++..+.
T Consensus 118 vGls~a~--~dAh~~v~~~a~~Vt~~~GG~GAvREv~dlil~aq~~~d 163 (170)
T COG1778 118 VGLSVAV--ADAHPLLKQRADYVTSKKGGEGAVREVCDLILQAQGKLD 163 (170)
T ss_pred cCCcccc--cccCHHHHHhhHhhhhccCcchHHHHHHHHHHHccCcHH
Confidence 9999999 8999999999999997654 4445555555554433
No 42
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.00 E-value=2.1e-09 Score=105.64 Aligned_cols=116 Identities=19% Similarity=0.260 Sum_probs=91.5
Q ss_pred EEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhh----cCCe
Q 002770 678 IIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQT----SGHH 753 (883)
Q Consensus 678 ~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~----~g~~ 753 (883)
.++.+.+.|.. +|++|+++|+++.++||++...+..+.+.+|+. .++... ..|.+.++.+.+ ....
T Consensus 25 ~~~~~~~~~~~------~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~--~~~~~~--~~k~~~~~~~~~~~~~~~~~ 94 (154)
T TIGR01670 25 EIKAFNVRDGY------GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT--HLYQGQ--SNKLIAFSDILEKLALAPEN 94 (154)
T ss_pred EEEEEechhHH------HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC--EEEecc--cchHHHHHHHHHHcCCCHHH
Confidence 55555555442 899999999999999999999999999999997 444433 456666665543 3468
Q ss_pred EEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhh-HHHHH
Q 002770 754 VAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQ-VVDAL 805 (883)
Q Consensus 754 v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~-l~~~i 805 (883)
++|+||+.||.+|++.|++++++ .++.+..+..|++++.++.-++ +.+++
T Consensus 95 ~~~vGDs~~D~~~~~~ag~~~~v--~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 145 (154)
T TIGR01670 95 VAYIGDDLIDWPVMEKVGLSVAV--ADAHPLLIPRADYVTRIAGGRGAVREVC 145 (154)
T ss_pred EEEECCCHHHHHHHHHCCCeEec--CCcCHHHHHhCCEEecCCCCCcHHHHHH
Confidence 99999999999999999999999 7888889999999998765443 44443
No 43
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.98 E-value=5.3e-09 Score=112.97 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=50.0
Q ss_pred CeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHH
Q 002770 752 HHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALD 806 (883)
Q Consensus 752 ~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~ 806 (883)
+.|+++|||.||.+||+.|++|+|| +|+.+.+|+.||+|+.+++-+++.++|+
T Consensus 213 ~~v~afGD~~NDi~Ml~~ag~~vAm--~NA~~~vK~~A~~vt~~n~~dGva~~i~ 265 (270)
T PRK10513 213 EEVMAIGDQENDIAMIEYAGVGVAM--GNAIPSVKEVAQFVTKSNLEDGVAFAIE 265 (270)
T ss_pred HHEEEECCchhhHHHHHhCCceEEe--cCccHHHHHhcCeeccCCCcchHHHHHH
Confidence 5799999999999999999999999 8999999999999999999999988875
No 44
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.97 E-value=3.7e-09 Score=111.26 Aligned_cols=132 Identities=22% Similarity=0.281 Sum_probs=100.3
Q ss_pred EEEEEecCceEEEEEEecCC-CChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCce----------------
Q 002770 668 VVYVGREGEGIIGAIAISDS-LRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEY---------------- 730 (883)
Q Consensus 668 ~~~~a~~~~~~lG~i~l~D~-lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~---------------- 730 (883)
.++.-.||. ++ -.|. +.+.+.++|++|++.|++++++||++...+..+.+.+|++...
T Consensus 5 li~~DlDGT-Ll----~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~ 79 (230)
T PRK01158 5 AIAIDIDGT-IT----DKDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKR 79 (230)
T ss_pred EEEEecCCC-cC----CCCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEEEcCCCCE
Confidence 444445554 33 3343 7899999999999999999999999999999999999983110
Q ss_pred -------------------------EE------------------------------------------EecCcc--chH
Q 002770 731 -------------------------IN------------------------------------------SSLTPQ--QKS 741 (883)
Q Consensus 731 -------------------------v~------------------------------------------~~~~p~--~K~ 741 (883)
.+ .++.|. .|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg 159 (230)
T PRK01158 80 IFLGDIEECEKAYSELKKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKG 159 (230)
T ss_pred EEEcchHHHHHHHHHHHHhccccceeeecCCcccccceeeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChH
Confidence 00 011111 144
Q ss_pred HHHHHHhhc----CCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHH
Q 002770 742 EVISTLQTS----GHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALD 806 (883)
Q Consensus 742 ~~v~~l~~~----g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~ 806 (883)
..++.+.+. ...++++||+.||.+|++.|++|+|| +|+.+.+|+.||+|+.+++-+++.++++
T Consensus 160 ~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam--~Na~~~vk~~a~~v~~~n~~~Gv~~~l~ 226 (230)
T PRK01158 160 TGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAV--ANADEELKEAADYVTEKSYGEGVAEAIE 226 (230)
T ss_pred HHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEe--cCccHHHHHhcceEecCCCcChHHHHHH
Confidence 444444332 25699999999999999999999999 8999999999999999999999988875
No 45
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.95 E-value=5.4e-09 Score=112.53 Aligned_cols=124 Identities=23% Similarity=0.391 Sum_probs=99.4
Q ss_pred EEecCC-CChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc-------------------------------
Q 002770 682 IAISDS-LRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE------------------------------- 729 (883)
Q Consensus 682 i~l~D~-lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~------------------------------- 729 (883)
+.-.|. +.+.++++|+++++.|++++++||++...+..+.+++|++..
T Consensus 14 Ll~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~~~l~~~~~~~i~~ 93 (264)
T COG0561 14 LLDSNKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNGGELLFQKPLSREDVEELLE 93 (264)
T ss_pred ccCCCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecCCcEEeeecCCHHHHHHHHH
Confidence 333443 899999999999999999999999999999999999998310
Q ss_pred ----------eEE-------------------------------------------------------------------
Q 002770 730 ----------YIN------------------------------------------------------------------- 732 (883)
Q Consensus 730 ----------~v~------------------------------------------------------------------- 732 (883)
.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (264)
T COG0561 94 LLEDFQGIALVLYTDDGIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHEILEELVEALRKRFPDLGLTV 173 (264)
T ss_pred HHHhccCceEEEEeccceeeccCCCcccccccccccccccccchhhcCcceEEEEecChHhHHHHHHHHhhhccccceEE
Confidence 000
Q ss_pred -------EecCcc--chHHHHHHHhhc-C---CeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChh
Q 002770 733 -------SSLTPQ--QKSEVISTLQTS-G---HHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLS 799 (883)
Q Consensus 733 -------~~~~p~--~K~~~v~~l~~~-g---~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~ 799 (883)
.++.|. +|...++.+.+. | ..|+++||+.||.+||+.|+.|||| +|+.+.+++.||++..+++-+
T Consensus 174 ~~s~~~~lei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam--~Na~~~~k~~A~~vt~~n~~~ 251 (264)
T COG0561 174 SSSGPISLDITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAM--GNADEELKELADYVTTSNDED 251 (264)
T ss_pred EEcCCceEEEecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeec--cCCCHHHHhhCCcccCCccch
Confidence 011222 355556655552 3 3599999999999999999999999 899999999999998999999
Q ss_pred hHHHHHHH
Q 002770 800 QVVDALDL 807 (883)
Q Consensus 800 ~l~~~i~~ 807 (883)
++.++++.
T Consensus 252 Gv~~~l~~ 259 (264)
T COG0561 252 GVAEALEK 259 (264)
T ss_pred HHHHHHHH
Confidence 99988764
No 46
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.93 E-value=4.7e-09 Score=109.35 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=94.5
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCce------------------------------------
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEY------------------------------------ 730 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~------------------------------------ 730 (883)
.+.+++.++|++|++.|++++++||++...+..++++++++...
T Consensus 18 ~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215)
T TIGR01487 18 MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKEDIFLANMEEEWFLDEEKKKRFPR 97 (215)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEEEeCCCcEEEecccchhhHHHhhhhhhhh
Confidence 48899999999999999999999999999999999999983100
Q ss_pred ---------------------------------------EEEecCc--cchHHHHHHHhhc----CCeEEEEcCCccCHH
Q 002770 731 ---------------------------------------INSSLTP--QQKSEVISTLQTS----GHHVAMVGDGINDAP 765 (883)
Q Consensus 731 ---------------------------------------v~~~~~p--~~K~~~v~~l~~~----g~~v~~vGDg~ND~~ 765 (883)
.+..+.| -.|...++.+.+. ...++++||+.||.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ 177 (215)
T TIGR01487 98 DRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDSGFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDID 177 (215)
T ss_pred hhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEecCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHH
Confidence 0011112 2566666666543 246999999999999
Q ss_pred HHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHH
Q 002770 766 SLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDA 804 (883)
Q Consensus 766 al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~ 804 (883)
|++.|+.|+|| +++.+.+++.||+|+.+++-+++.++
T Consensus 178 ml~~ag~~vam--~na~~~~k~~A~~v~~~~~~~Gv~~~ 214 (215)
T TIGR01487 178 LFRVVGFKVAV--ANADDQLKEIADYVTSNPYGEGVVEV 214 (215)
T ss_pred HHHhCCCeEEc--CCccHHHHHhCCEEcCCCCCchhhhh
Confidence 99999999999 89999999999999988888888765
No 47
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.91 E-value=5.3e-09 Score=113.10 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=48.3
Q ss_pred CeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCE--EEeCCChhhHHHHHH
Q 002770 752 HHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASI--ILLGNKLSQVVDALD 806 (883)
Q Consensus 752 ~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~--vl~~~~~~~l~~~i~ 806 (883)
..|+++|||.||.+||+.|+.|||| +|+.+.+|+.||. |+.+++-+++.++|+
T Consensus 205 ~~v~afGD~~NDi~Ml~~ag~~vAm--~Na~~~vK~~A~~~~v~~~n~edGva~~l~ 259 (272)
T PRK15126 205 ADCMAFGDAMNDREMLGSVGRGFIM--GNAMPQLRAELPHLPVIGHCRNQAVSHYLT 259 (272)
T ss_pred HHeEEecCCHHHHHHHHHcCCceec--cCChHHHHHhCCCCeecCCCcchHHHHHHH
Confidence 5799999999999999999999999 8999999999996 677888999988774
No 48
>PRK10976 putative hydrolase; Provisional
Probab=98.91 E-value=1.1e-08 Score=110.13 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=48.9
Q ss_pred CeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcC--EEEeCCChhhHHHHHH
Q 002770 752 HHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAAS--IILLGNKLSQVVDALD 806 (883)
Q Consensus 752 ~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad--~vl~~~~~~~l~~~i~ 806 (883)
..|+++||+.||.+||+.|+.|+|| +|+.+.+|+.|| .|+.+++-+++.++++
T Consensus 207 ~~viafGD~~NDi~Ml~~ag~~vAm--~NA~~~vK~~A~~~~v~~~n~edGVa~~l~ 261 (266)
T PRK10976 207 KDCIAFGDGMNDAEMLSMAGKGCIM--GNAHQRLKDLLPELEVIGSNADDAVPHYLR 261 (266)
T ss_pred HHeEEEcCCcccHHHHHHcCCCeee--cCCcHHHHHhCCCCeecccCchHHHHHHHH
Confidence 5799999999999999999999999 899999999988 7888899999988875
No 49
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.91 E-value=6.1e-09 Score=103.36 Aligned_cols=103 Identities=18% Similarity=0.252 Sum_probs=83.8
Q ss_pred HHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCcc--chHHHHHHHhhcCCeEEEEcCCccCHHHHHhCC
Q 002770 694 HTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQ--QKSEVISTLQTSGHHVAMVGDGINDAPSLALAD 771 (883)
Q Consensus 694 ~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~--~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~Ad 771 (883)
..|+.|++.|+++.++|+.+...+....+.+|+. .++....|+ ....+++.++-....++||||+.||.+|++.|+
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~--~~f~~~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag 118 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIK--RFHEGIKKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVG 118 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc--EEEecCCCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCC
Confidence 5789999999999999999999999999999997 555554332 223333333333467999999999999999999
Q ss_pred eeEEeecCCccHHHHhhcCEEEeCCChhh
Q 002770 772 VGIALQIEAQENAASTAASIILLGNKLSQ 800 (883)
Q Consensus 772 vgIa~~~~~~~~~a~~~ad~vl~~~~~~~ 800 (883)
++++| .++.+..++.|++|+..++-.+
T Consensus 119 ~~~am--~nA~~~lk~~A~~I~~~~~~~g 145 (169)
T TIGR02726 119 LAVAV--GDAVADVKEAAAYVTTARGGHG 145 (169)
T ss_pred CeEEC--cCchHHHHHhCCEEcCCCCCCC
Confidence 99999 8999999999999987655444
No 50
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.87 E-value=1.2e-08 Score=106.66 Aligned_cols=113 Identities=23% Similarity=0.360 Sum_probs=93.6
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEe-----------------cCccchHHHHHHHhh
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSS-----------------LTPQQKSEVISTLQT 749 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~-----------------~~p~~K~~~v~~l~~ 749 (883)
++.+++.+.++.|++.|+++.++||.....+..+.+.+|+.. +++. ..++.|..+++.+.+
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 162 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA--AFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLR 162 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc--eEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHH
Confidence 578999999999999999999999999999999999999963 4321 113347777776654
Q ss_pred cC----CeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHH
Q 002770 750 SG----HHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDA 804 (883)
Q Consensus 750 ~g----~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~ 804 (883)
+. +.++||||+.||.++++.|++++++ ++.+..++.||+++.++++..+..+
T Consensus 163 ~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~---~~~~~~~~~a~~~i~~~~~~~~~~~ 218 (219)
T TIGR00338 163 KEGISPENTVAVGDGANDLSMIKAAGLGIAF---NAKPKLQQKADICINKKDLTDILPL 218 (219)
T ss_pred HcCCCHHHEEEEECCHHHHHHHHhCCCeEEe---CCCHHHHHhchhccCCCCHHHHHhh
Confidence 42 4699999999999999999999999 3567888999999999998887654
No 51
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.85 E-value=1e-08 Score=105.83 Aligned_cols=105 Identities=25% Similarity=0.313 Sum_probs=85.2
Q ss_pred CCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--------------eEEE-ecCccchHHHHHHHhhc
Q 002770 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE--------------YINS-SLTPQQKSEVISTLQTS 750 (883)
Q Consensus 686 D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~--------------~v~~-~~~p~~K~~~v~~l~~~ 750 (883)
.+++|++.+.++.+|++|.+++++||-...-+..+++++|++.. .+.. .+..+.|...++.+.+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~ 155 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAE 155 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999521 0111 23457899888777664
Q ss_pred -CC---eEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEE
Q 002770 751 -GH---HVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIIL 793 (883)
Q Consensus 751 -g~---~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl 793 (883)
|. .+.++|||.||.|||+.||.+|++ +..+..+..|+...
T Consensus 156 ~g~~~~~~~a~gDs~nDlpml~~ag~~ia~---n~~~~l~~~a~~~~ 199 (212)
T COG0560 156 LGIPLEETVAYGDSANDLPMLEAAGLPIAV---NPKPKLRALADVRI 199 (212)
T ss_pred cCCCHHHeEEEcCchhhHHHHHhCCCCeEe---CcCHHHHHHHHHhc
Confidence 43 599999999999999999999999 44555666666554
No 52
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.83 E-value=2.5e-08 Score=104.54 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=94.3
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc-------------------------------------
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE------------------------------------- 729 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~------------------------------------- 729 (883)
.+.+.+.++|++|++.|++++++||++...+..+.+++|+...
T Consensus 15 ~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (225)
T TIGR01482 15 AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENGGEISYNEGMDDIFLAYLEEEWFLDIVIAKTF 94 (225)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEecCcEEEeCCCCceEEecccCHHHHHHHHHhccc
Confidence 4789999999999999999999999999999999999986210
Q ss_pred ------------------------------------eE-------EEecCcc--chHHHHHHHhhc----CCeEEEEcCC
Q 002770 730 ------------------------------------YI-------NSSLTPQ--QKSEVISTLQTS----GHHVAMVGDG 760 (883)
Q Consensus 730 ------------------------------------~v-------~~~~~p~--~K~~~v~~l~~~----g~~v~~vGDg 760 (883)
.+ +..+.|. .|...++.+.+. ...++++||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~ 174 (225)
T TIGR01482 95 PFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDS 174 (225)
T ss_pred chhhhccccccccceEEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCC
Confidence 00 0011221 466666666543 2579999999
Q ss_pred ccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhh----HHHHHH
Q 002770 761 INDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQ----VVDALD 806 (883)
Q Consensus 761 ~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~----l~~~i~ 806 (883)
.||.+|++.|++|+|| +|+.+.+|+.||.|+.+++-.+ +.++++
T Consensus 175 ~NDi~m~~~ag~~vam--~Na~~~~k~~A~~vt~~~~~~G~~~~v~~~l~ 222 (225)
T TIGR01482 175 ENDIDLFEVPGFGVAV--ANAQPELKEWADYVTESPYGEGGAEAIGEILQ 222 (225)
T ss_pred HhhHHHHHhcCceEEc--CChhHHHHHhcCeecCCCCCCcHHHHHHHHHH
Confidence 9999999999999999 8999999999999998888888 655543
No 53
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.81 E-value=6.5e-09 Score=100.82 Aligned_cols=91 Identities=29% Similarity=0.423 Sum_probs=79.3
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEec-------------------CccchHHHHHHH
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSL-------------------TPQQKSEVISTL 747 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~-------------------~p~~K~~~v~~l 747 (883)
.+.|++++.+..|++.|.+++++||.-...+..+|.++||+..++||+. ....|.++++.+
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~l 167 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALL 167 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHH
Confidence 4689999999999999999999999999999999999999876677652 234699999999
Q ss_pred hhc--CCeEEEEcCCccCHHHHHhCCeeEEee
Q 002770 748 QTS--GHHVAMVGDGINDAPSLALADVGIALQ 777 (883)
Q Consensus 748 ~~~--g~~v~~vGDg~ND~~al~~AdvgIa~~ 777 (883)
++. ...++|||||.||.+|+..||.=|+.+
T Consensus 168 rk~~~~~~~~mvGDGatDlea~~pa~afi~~~ 199 (227)
T KOG1615|consen 168 RKNYNYKTIVMVGDGATDLEAMPPADAFIGFG 199 (227)
T ss_pred HhCCChheeEEecCCccccccCCchhhhhccC
Confidence 884 357999999999999999988777774
No 54
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.79 E-value=5.1e-08 Score=105.32 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=49.1
Q ss_pred CeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHH
Q 002770 752 HHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALD 806 (883)
Q Consensus 752 ~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~ 806 (883)
+.++++||+.||.+|++.|++|++| +++.+..++.||+++.+++-+++.++++
T Consensus 216 ~e~i~~GD~~NDi~m~~~ag~~vam--gna~~~lk~~Ad~v~~~n~~dGv~~~l~ 268 (272)
T PRK10530 216 KNVVAFGDNFNDISMLEAAGLGVAM--GNADDAVKARADLVIGDNTTPSIAEFIY 268 (272)
T ss_pred HHeEEeCCChhhHHHHHhcCceEEe--cCchHHHHHhCCEEEecCCCCcHHHHHH
Confidence 4699999999999999999999999 7888899999999999999999998875
No 55
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.79 E-value=6.2e-08 Score=102.76 Aligned_cols=119 Identities=25% Similarity=0.313 Sum_probs=96.7
Q ss_pred cCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc-----------------------------------
Q 002770 685 SDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE----------------------------------- 729 (883)
Q Consensus 685 ~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~----------------------------------- 729 (883)
...+.+++.+++++|+++|+++++.||++...+..+.+++++...
T Consensus 13 ~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~l~~~~i~~~~~~~i~~~~~ 92 (254)
T PF08282_consen 13 DGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKILYEKPIDSDDVKKILKYLK 92 (254)
T ss_dssp TSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEEEEEESB-HHHHHHHHHHHH
T ss_pred CCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccchhhhcccccceeeecccccchhhheeccchhheeehhh
Confidence 345789999999999999999999999999999999999997200
Q ss_pred --------------------------------------------------e-------------------------E---
Q 002770 730 --------------------------------------------------Y-------------------------I--- 731 (883)
Q Consensus 730 --------------------------------------------------~-------------------------v--- 731 (883)
. .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 172 (254)
T PF08282_consen 93 EHNISFFFYTDDDIYIYENKDEEELFFEHKFFNFKESIVSEDDLEDEEIFKILFFPDPEDLEQLREELKKKFPNLIDVVR 172 (254)
T ss_dssp HTTCEEEEEESSEEEESSTTCHHHHHHHHHHTSCEEEESHHHHHHCSSESEEEEESCHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred hcccccccccceeeecccccccchhhhhhcccccccccccccccccccceeeeccccchhhhhhhhhhccccCcceeEEE
Confidence 0 0
Q ss_pred ----EEecCc--cchHHHHHHHhhc----CCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhH
Q 002770 732 ----NSSLTP--QQKSEVISTLQTS----GHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQV 801 (883)
Q Consensus 732 ----~~~~~p--~~K~~~v~~l~~~----g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l 801 (883)
+..++| -.|...++.+.+. .+.++++||+.||.+||+.++.|+|| +++++..++.||+++..++-.++
T Consensus 173 ~~~~~lei~~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am--~na~~~~k~~a~~i~~~~~~~gv 250 (254)
T PF08282_consen 173 SSPYFLEITPKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAM--GNATPELKKAADYITPSNNDDGV 250 (254)
T ss_dssp EETTEEEEEETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEE--TTS-HHHHHHSSEEESSGTCTHH
T ss_pred ecccceEEeeCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEE--cCCCHHHHHhCCEEecCCCCChH
Confidence 112233 3577777777652 36899999999999999999999999 89999999999999987776888
Q ss_pred HHHH
Q 002770 802 VDAL 805 (883)
Q Consensus 802 ~~~i 805 (883)
.++|
T Consensus 251 ~~~i 254 (254)
T PF08282_consen 251 AKAI 254 (254)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7764
No 56
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.77 E-value=8.6e-08 Score=97.07 Aligned_cols=98 Identities=19% Similarity=0.274 Sum_probs=82.2
Q ss_pred HHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhc----CCeEEEEcCCccCHHHHHh
Q 002770 694 HTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTS----GHHVAMVGDGINDAPSLAL 769 (883)
Q Consensus 694 ~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~----g~~v~~vGDg~ND~~al~~ 769 (883)
.+|+.|+++|+++.++||++...+..+++++|+. .++.. .++|...++.+.++ ...++||||+.||.+|++.
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~--~~f~g--~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~ 130 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGIT--HLYQG--QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEK 130 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCc--eeecC--CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHH
Confidence 6899999999999999999999999999999996 45543 35676666655432 3579999999999999999
Q ss_pred CCeeEEeecCCccHHHHhhcCEEEeCCC
Q 002770 770 ADVGIALQIEAQENAASTAASIILLGNK 797 (883)
Q Consensus 770 AdvgIa~~~~~~~~~a~~~ad~vl~~~~ 797 (883)
|++++++ +++.+..+..||+++..++
T Consensus 131 aG~~~~v--~~~~~~~~~~a~~v~~~~~ 156 (183)
T PRK09484 131 VGLSVAV--ADAHPLLLPRADYVTRIAG 156 (183)
T ss_pred CCCeEec--CChhHHHHHhCCEEecCCC
Confidence 9999998 7788888899999986443
No 57
>PLN02887 hydrolase family protein
Probab=98.76 E-value=6.3e-08 Score=113.58 Aligned_cols=53 Identities=32% Similarity=0.475 Sum_probs=50.0
Q ss_pred CeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHH
Q 002770 752 HHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALD 806 (883)
Q Consensus 752 ~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~ 806 (883)
..|+++|||.||.+||+.|+.|||| +|+.+.+|+.||+|+.+++-++|.++|+
T Consensus 524 eeviAFGDs~NDIeMLe~AG~gVAM--gNA~eeVK~~Ad~VT~sNdEDGVA~aLe 576 (580)
T PLN02887 524 DEIMAIGDGENDIEMLQLASLGVAL--SNGAEKTKAVADVIGVSNDEDGVADAIY 576 (580)
T ss_pred HHEEEEecchhhHHHHHHCCCEEEe--CCCCHHHHHhCCEEeCCCCcCHHHHHHH
Confidence 3699999999999999999999999 8999999999999999999999998875
No 58
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.60 E-value=2.4e-07 Score=95.65 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=88.9
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc----------e-EEEe--cCccchHHHHHHHhhcCCe
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE----------Y-INSS--LTPQQKSEVISTLQTSGHH 753 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~----------~-v~~~--~~p~~K~~~v~~l~~~g~~ 753 (883)
++.|++.+.++.|+++ +++.++|+.....+..+.+++|++.- . +... ..|+.|...++.++..+..
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~~ 146 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGYR 146 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCCe
Confidence 3578999999999999 99999999999999999999998520 0 1111 2467888999999888899
Q ss_pred EEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCE-EEeCCChhhHHHHHH
Q 002770 754 VAMVGDGINDAPSLALADVGIALQIEAQENAASTAASI-ILLGNKLSQVVDALD 806 (883)
Q Consensus 754 v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~-vl~~~~~~~l~~~i~ 806 (883)
++||||+.||.+|.+.|++|+.+ +.........++. ++ +++..+...+.
T Consensus 147 ~v~iGDs~~D~~~~~aa~~~v~~--~~~~~~~~~~~~~~~~--~~~~el~~~l~ 196 (205)
T PRK13582 147 VIAAGDSYNDTTMLGEADAGILF--RPPANVIAEFPQFPAV--HTYDELLAAID 196 (205)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEE--CCCHHHHHhCCccccc--CCHHHHHHHHH
Confidence 99999999999999999999988 4443334445555 33 44766665544
No 59
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.59 E-value=2.2e-07 Score=99.57 Aligned_cols=51 Identities=27% Similarity=0.343 Sum_probs=47.0
Q ss_pred CeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHH
Q 002770 752 HHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDA 804 (883)
Q Consensus 752 ~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~ 804 (883)
..++++||+.||.+|++.|+.|++| +++.+..++.||+++.+++-+++.++
T Consensus 205 ~~~~~~GD~~nD~~m~~~~~~~~a~--~na~~~~k~~a~~~~~~n~~dGV~~~ 255 (256)
T TIGR00099 205 EDVIAFGDGMNDIEMLEAAGYGVAM--GNADEELKALADYVTDSNNEDGVALA 255 (256)
T ss_pred HHEEEeCCcHHhHHHHHhCCceeEe--cCchHHHHHhCCEEecCCCCcchhhh
Confidence 5799999999999999999999999 78899999999999998888888764
No 60
>PLN02954 phosphoserine phosphatase
Probab=98.55 E-value=5.7e-07 Score=94.23 Aligned_cols=115 Identities=22% Similarity=0.310 Sum_probs=86.2
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEe-------------------cCccchHHHHHHHh
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSS-------------------LTPQQKSEVISTLQ 748 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~-------------------~~p~~K~~~v~~l~ 748 (883)
+.|++.+.++.|++.|+++.++||.....+..+++.+|++...+++. .....|.+.++.+.
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~ 164 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIK 164 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHH
Confidence 67999999999999999999999999999999999999974334431 01235888888776
Q ss_pred hc--CCeEEEEcCCccCHHHHHh--CCeeEEeecCCccHHHHhhcCEEEeCCChhhHHHH
Q 002770 749 TS--GHHVAMVGDGINDAPSLAL--ADVGIALQIEAQENAASTAASIILLGNKLSQVVDA 804 (883)
Q Consensus 749 ~~--g~~v~~vGDg~ND~~al~~--AdvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~ 804 (883)
++ ...++||||+.||..|.+. ++++++.++....+.....+|+++. ++..+..+
T Consensus 165 ~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~el~~~ 222 (224)
T PLN02954 165 KKHGYKTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVT--DFQDLIEV 222 (224)
T ss_pred HHcCCCceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEEC--CHHHHHHh
Confidence 64 3579999999999999777 5666766322223344556899874 46666554
No 61
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.50 E-value=5.8e-07 Score=92.28 Aligned_cols=100 Identities=33% Similarity=0.433 Sum_probs=78.5
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEe-----------------cCccchHHHHHHHhh
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSS-----------------LTPQQKSEVISTLQT 749 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~-----------------~~p~~K~~~v~~l~~ 749 (883)
++++++.+.++.|+++|+++.++|+.....+..+++.+|+. .+++. ..|..|.+.++.+.+
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~--~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD--YVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC--eEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 47899999999999999999999999999999999999986 33321 224567667766644
Q ss_pred c----CCeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcC
Q 002770 750 S----GHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAAS 790 (883)
Q Consensus 750 ~----g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad 790 (883)
+ .+.++||||+.||.+|++.||+++++ +......+.+.|
T Consensus 158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~--~~~~~~~~~a~~ 200 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDLPMFEVADISISL--GDEGHADYLAKD 200 (201)
T ss_pred HhCCCHHHEEEEcCCHhHHHHHHhcCCeEEE--CCCccchhhccc
Confidence 3 35699999999999999999999999 443434444443
No 62
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.45 E-value=2.4e-06 Score=92.40 Aligned_cols=59 Identities=10% Similarity=0.217 Sum_probs=47.1
Q ss_pred CCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC
Q 002770 665 SKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIG 727 (883)
Q Consensus 665 g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~ 727 (883)
...+++.-.||. ++. =...+.+.++++|++|+++|++++++||++...+..+++++|++
T Consensus 6 ~~~lI~~DlDGT-LL~---~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 6 DPLLIFTDLDGT-LLD---SHTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CCeEEEEeCccC-CcC---CCCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 445666666775 432 12345688999999999999999999999999999999999873
No 63
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.40 E-value=2.8e-06 Score=91.05 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=46.2
Q ss_pred CCeEEEEcCCccCHHHHHhCCeeEEeecCCcc---HHHHhh--c-CEEEeCCChhhHHHHHH
Q 002770 751 GHHVAMVGDGINDAPSLALADVGIALQIEAQE---NAASTA--A-SIILLGNKLSQVVDALD 806 (883)
Q Consensus 751 g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~---~~a~~~--a-d~vl~~~~~~~l~~~i~ 806 (883)
...++++||+.||.+|++.|+.|||| +|+. +..++. | ++|..+++-+++.++++
T Consensus 194 ~~~~~a~GD~~ND~~Ml~~ag~~vam--~Na~~~~~~lk~~~~a~~~vt~~~~~dGva~~l~ 253 (256)
T TIGR01486 194 AIKVVGLGDSPNDLPLLEVVDLAVVV--PGPNGPNVSLKPGDPGSFLLTPAPGPEGWREALE 253 (256)
T ss_pred CceEEEEcCCHhhHHHHHHCCEEEEe--CCCCCCccccCccCCCcEEEcCCCCcHHHHHHHH
Confidence 35699999999999999999999999 7776 467776 4 58888999999988875
No 64
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.34 E-value=3.4e-06 Score=87.76 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=75.3
Q ss_pred CCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEe-----------cCc------------cchHH
Q 002770 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSS-----------LTP------------QQKSE 742 (883)
Q Consensus 686 D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~-----------~~p------------~~K~~ 742 (883)
-+++|++.+.++.|++.|+++.++||.....+..+.+.++.. +.++++ ..| ..|..
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~-~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEK-DRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCc-ccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 367999999999999999999999999999999999888543 344431 112 24889
Q ss_pred HHHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEe
Q 002770 743 VISTLQTSGHHVAMVGDGINDAPSLALADVGIAL 776 (883)
Q Consensus 743 ~v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~ 776 (883)
+++.++.....++|||||.||.+|++.||+.++-
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~~ar 181 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDLCFAR 181 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHHHHhCCeeEeh
Confidence 9999988888899999999999999999998775
No 65
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.33 E-value=2.5e-06 Score=89.16 Aligned_cols=89 Identities=24% Similarity=0.288 Sum_probs=75.0
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEe---c----------Cc----------cchHHH
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSS---L----------TP----------QQKSEV 743 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~---~----------~p----------~~K~~~ 743 (883)
+++|++.+.++.|++.|+++.++||.....+..+.+.+ +..+.++++ . .| ..|..+
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 57999999999999999999999999999999999998 754445543 1 11 248899
Q ss_pred HHHHhhcCCeEEEEcCCccCHHHHHhCCeeEEe
Q 002770 744 ISTLQTSGHHVAMVGDGINDAPSLALADVGIAL 776 (883)
Q Consensus 744 v~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~ 776 (883)
++.++.....++|||||.||.+|.+.||+.++-
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a~ 185 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADKVFAR 185 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCcceeH
Confidence 999888878899999999999999999996663
No 66
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.31 E-value=1.5e-06 Score=88.36 Aligned_cols=79 Identities=32% Similarity=0.546 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEe-------------cCcc-c--hHHHHHHH------
Q 002770 690 HDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSS-------------LTPQ-Q--KSEVISTL------ 747 (883)
Q Consensus 690 ~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~-------------~~p~-~--K~~~v~~l------ 747 (883)
+++.+.|+.++++|++++++||+....+..+++.+|++...+++. +++. + |...++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 778899999999999999999999999999999999975433332 2333 3 99999999
Q ss_pred hhcCCeEEEEcCCccCHHHHH
Q 002770 748 QTSGHHVAMVGDGINDAPSLA 768 (883)
Q Consensus 748 ~~~g~~v~~vGDg~ND~~al~ 768 (883)
+.....++++|||.||.+||+
T Consensus 172 ~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 172 DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp THTCCEEEEEESSGGGHHHHH
T ss_pred CCCCCeEEEEECCHHHHHHhC
Confidence 445789999999999999986
No 67
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.23 E-value=7.7e-06 Score=85.50 Aligned_cols=120 Identities=20% Similarity=0.320 Sum_probs=89.5
Q ss_pred cCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--eEEE-ec------CccchHHHHHHHhhcCCeEE
Q 002770 685 SDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE--YINS-SL------TPQQKSEVISTLQTSGHHVA 755 (883)
Q Consensus 685 ~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~--~v~~-~~------~p~~K~~~v~~l~~~g~~v~ 755 (883)
...+-++++++++.|+++|++..++|+++...+..+.+..|+..- .+++ .- .|+.....++.+....+.++
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 345678999999999999999999999999999999999999632 1223 21 23334455555554444799
Q ss_pred EEcCCccCHHHHHhCC---eeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHH
Q 002770 756 MVGDGINDAPSLALAD---VGIALQIEAQENAASTAASIILLGNKLSQVVDALD 806 (883)
Q Consensus 756 ~vGDg~ND~~al~~Ad---vgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~ 806 (883)
||||..+|..|-+.|+ ||+..|...........+|+++ +++..+...+.
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi--~~~~el~~~l~ 218 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVI--DSLAELLALLA 218 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEE--CCHHHHHHHHh
Confidence 9999999999999998 6777743234556667799998 44777766543
No 68
>PRK08238 hypothetical protein; Validated
Probab=98.19 E-value=3e-05 Score=89.66 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=84.3
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEE-----ecCccchHHHHHHHhhcCCeEEEEcCCc
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINS-----SLTPQQKSEVISTLQTSGHHVAMVGDGI 761 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~-----~~~p~~K~~~v~~l~~~g~~v~~vGDg~ 761 (883)
++++++.+.+++++++|++++++|+-+...+..+++.+|+-+ .+.+ +..|+.|.+.+++...+ +.+.++||..
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlFd-~Vigsd~~~~~kg~~K~~~l~~~l~~-~~~~yvGDS~ 149 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFD-GVFASDGTTNLKGAAKAAALVEAFGE-RGFDYAGNSA 149 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCC-EEEeCCCccccCCchHHHHHHHHhCc-cCeeEecCCH
Confidence 478999999999999999999999999999999999999822 3432 35667787665543222 2368999999
Q ss_pred cCHHHHHhCCeeEEeecCCccHHH---HhhcCEEE-eCCChhhHHHHHHHHH
Q 002770 762 NDAPSLALADVGIALQIEAQENAA---STAASIIL-LGNKLSQVVDALDLAK 809 (883)
Q Consensus 762 ND~~al~~AdvgIa~~~~~~~~~a---~~~ad~vl-~~~~~~~l~~~i~~~r 809 (883)
||.++++.|+-.+++ +.+.... ++....+. ....-..+...+++.|
T Consensus 150 ~Dlp~~~~A~~av~V--n~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~l~R 199 (479)
T PRK08238 150 ADLPVWAAARRAIVV--GASPGVARAARALGPVERVFPPRPARLRTWLKALR 199 (479)
T ss_pred HHHHHHHhCCCeEEE--CCCHHHHHHHHHcCCcceecCCCchHHHHHHHHhC
Confidence 999999999999999 4433322 22223333 2333344555555554
No 69
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.16 E-value=1e-05 Score=84.63 Aligned_cols=121 Identities=17% Similarity=0.251 Sum_probs=88.4
Q ss_pred CCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--eEEEe-----cCcc--chHHHHHHHhhcCCeEEE
Q 002770 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE--YINSS-----LTPQ--QKSEVISTLQTSGHHVAM 756 (883)
Q Consensus 686 D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~--~v~~~-----~~p~--~K~~~v~~l~~~g~~v~~ 756 (883)
.++.+++.+.++.|++.|++++++||........+.+.+|+... .+++. ..|+ --..+++.++.....+++
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 171 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLF 171 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEE
Confidence 35789999999999999999999999999999999999998531 22221 1222 123455555555678999
Q ss_pred EcCCccCHHHHHhCCe-eEEeecC--CccHHHHhhcCEEEeCCChhhHHHHHHHH
Q 002770 757 VGDGINDAPSLALADV-GIALQIE--AQENAASTAASIILLGNKLSQVVDALDLA 808 (883)
Q Consensus 757 vGDg~ND~~al~~Adv-gIa~~~~--~~~~~a~~~ad~vl~~~~~~~l~~~i~~~ 808 (883)
|||+.||+.+.+.+++ +|.+..+ +..+.....+++++ +++..+...+.++
T Consensus 172 igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i--~~~~~l~~~l~~~ 224 (226)
T PRK13222 172 VGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVI--DHFAELLPLLGLA 224 (226)
T ss_pred ECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEE--CCHHHHHHHHHHh
Confidence 9999999999999998 5555212 23344455788877 6688888877553
No 70
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.16 E-value=4.3e-06 Score=84.00 Aligned_cols=81 Identities=31% Similarity=0.469 Sum_probs=67.7
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEE-------------------ecCccchHHHHHHHh
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINS-------------------SLTPQQKSEVISTLQ 748 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~-------------------~~~p~~K~~~v~~l~ 748 (883)
+++++.+.++.+++.|++++++||.....+..+++.+|+.. +++ ...++.|...++.++
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~--~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~ 151 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD--VFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELL 151 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch--heeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHH
Confidence 57899999999999999999999999999999999999862 221 123467998998876
Q ss_pred hc----CCeEEEEcCCccCHHHHHhC
Q 002770 749 TS----GHHVAMVGDGINDAPSLALA 770 (883)
Q Consensus 749 ~~----g~~v~~vGDg~ND~~al~~A 770 (883)
++ ...++++|||.||.+|++.|
T Consensus 152 ~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 152 EESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 54 35799999999999999875
No 71
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.14 E-value=1.2e-05 Score=82.96 Aligned_cols=117 Identities=15% Similarity=0.209 Sum_probs=82.9
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEEe-----cCcc--chHHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINSS-----LTPQ--QKSEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~~-----~~p~--~K~~~v~~l~~~g~~v~~v 757 (883)
++.+++.+++++|+++|+++.++|+.....+....+.+|+.. +.+++. ..|+ --..+++.++-..+.++||
T Consensus 75 ~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~i 154 (205)
T TIGR01454 75 EVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMV 154 (205)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEEE
Confidence 568999999999999999999999999999999999999953 223321 1121 1133334444445779999
Q ss_pred cCCccCHHHHHhCCee---EEeecCCccHHHHhhcCEEEeCCChhhHHHHH
Q 002770 758 GDGINDAPSLALADVG---IALQIEAQENAASTAASIILLGNKLSQVVDAL 805 (883)
Q Consensus 758 GDg~ND~~al~~Advg---Ia~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i 805 (883)
||+.+|..+.+.+++. +..|.++..+..++.+|+++ +++..+..++
T Consensus 155 gD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~--~~~~~l~~~~ 203 (205)
T TIGR01454 155 GDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLL--RKPQSLLALC 203 (205)
T ss_pred cCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeee--CCHHHHHHHh
Confidence 9999999999999974 33322233345567789987 4476665544
No 72
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.14 E-value=8.6e-06 Score=83.79 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=74.4
Q ss_pred cCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEe------------------cCccchHHHHHH
Q 002770 685 SDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSS------------------LTPQQKSEVIST 746 (883)
Q Consensus 685 ~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~------------------~~p~~K~~~v~~ 746 (883)
...+++++.+.++.++++|++++++||.....+..+++.+|++. +++. +.++.|...++.
T Consensus 85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~--~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~ 162 (202)
T TIGR01490 85 ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN--AIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAE 162 (202)
T ss_pred HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc--eEecceEEcCCCEEeCCccCCCCCChHHHHHHHH
Confidence 34679999999999999999999999999999999999999962 3221 223568777776
Q ss_pred Hhh-cC---CeEEEEcCCccCHHHHHhCCeeEEe
Q 002770 747 LQT-SG---HHVAMVGDGINDAPSLALADVGIAL 776 (883)
Q Consensus 747 l~~-~g---~~v~~vGDg~ND~~al~~AdvgIa~ 776 (883)
+.+ .+ ..+.++||+.||.+|++.|+.++++
T Consensus 163 ~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v 196 (202)
T TIGR01490 163 LLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVV 196 (202)
T ss_pred HHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEe
Confidence 644 33 3689999999999999999999998
No 73
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.12 E-value=9.9e-06 Score=82.10 Aligned_cols=89 Identities=21% Similarity=0.323 Sum_probs=73.8
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--eEEEe-----------c------------CccchH
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE--YINSS-----------L------------TPQQKS 741 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~--~v~~~-----------~------------~p~~K~ 741 (883)
++.+++.+.++.|++.|+++.++|+.+......+.+..|+... .+++. . ....|.
T Consensus 72 ~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K~ 151 (188)
T TIGR01489 72 PIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCKG 151 (188)
T ss_pred CCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCHH
Confidence 6789999999999999999999999999999999999998531 23321 0 112499
Q ss_pred HHHHHHhhc-CCeEEEEcCCccCHHHHHhCCeeEE
Q 002770 742 EVISTLQTS-GHHVAMVGDGINDAPSLALADVGIA 775 (883)
Q Consensus 742 ~~v~~l~~~-g~~v~~vGDg~ND~~al~~AdvgIa 775 (883)
++++.++++ ...++|||||.||..|.+.||+-.|
T Consensus 152 ~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~a 186 (188)
T TIGR01489 152 KVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVFA 186 (188)
T ss_pred HHHHHHHhhcCceEEEECCCcchhchHhcCCcccc
Confidence 999999887 8899999999999999999987544
No 74
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.09 E-value=1.9e-05 Score=83.42 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=54.9
Q ss_pred chHHHHHHHhhc-C---CeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcC----EEEeCCChhhHHHHHHH
Q 002770 739 QKSEVISTLQTS-G---HHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAAS----IILLGNKLSQVVDALDL 807 (883)
Q Consensus 739 ~K~~~v~~l~~~-g---~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad----~vl~~~~~~~l~~~i~~ 807 (883)
.|...++.+.++ | ..++++||+.||.+|++.++.||+| +++.+..++.|| +|..+++-.++.++|+.
T Consensus 159 ~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav--~na~~~~k~~a~~~~~~v~~~~~~~Gv~~~i~~ 233 (236)
T TIGR02471 159 SKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVV--GNHDPELEGLRHQQRIYFANNPHAFGILEGINH 233 (236)
T ss_pred ChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEE--cCCcHHHHHhhcCCcEEEcCCCChhHHHHHHHh
Confidence 355555555443 2 3689999999999999999999999 899999999999 78778888889888753
No 75
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.99 E-value=1.1e-05 Score=95.33 Aligned_cols=71 Identities=25% Similarity=0.420 Sum_probs=67.4
Q ss_pred EEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcccccccC
Q 002770 73 TVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKRRVSG 152 (883)
Q Consensus 73 ~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~~~~~ 152 (883)
+..+++.||+|++|+++||+.+++.+||.++.|.+..+++++.|||.. ++++.+.+.++++||.+.+.++.
T Consensus 70 ~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v---------~s~~~~~e~ie~~gf~a~~i~~~ 140 (951)
T KOG0207|consen 70 KCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAV---------TSPDSIAESIEDLGFSAELIESV 140 (951)
T ss_pred eeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcc---------cCchhHHHHHHhcCccceehhcc
Confidence 678999999999999999999999999999999999999999999998 89999999999999999877654
No 76
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.97 E-value=4.5e-05 Score=79.27 Aligned_cols=116 Identities=19% Similarity=0.271 Sum_probs=81.4
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--eEEE-ec----C--ccchHHHHHHHhhcCCeEEEEc
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE--YINS-SL----T--PQQKSEVISTLQTSGHHVAMVG 758 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~--~v~~-~~----~--p~~K~~~v~~l~~~g~~v~~vG 758 (883)
+.|++.++++.|+++|+++.++|+.....+..+.+..|+..- .+++ .. . |+--..+++.+......++|||
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~iG 162 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMVG 162 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEEC
Confidence 579999999999999999999999999999999999999631 1222 11 1 2222344444444456899999
Q ss_pred CCccCHHHHHhCCe---eEEeecCCccHHHHhhcCEEEeCCChhhHHHHH
Q 002770 759 DGINDAPSLALADV---GIALQIEAQENAASTAASIILLGNKLSQVVDAL 805 (883)
Q Consensus 759 Dg~ND~~al~~Adv---gIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i 805 (883)
|+.+|..+-+.|++ ++..+.....+.....+|+++ +++..+..++
T Consensus 163 Ds~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i--~~~~~l~~~i 210 (214)
T PRK13288 163 DNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFML--DKMSDLLAIV 210 (214)
T ss_pred CCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEE--CCHHHHHHHH
Confidence 99999999999997 333311122223345688876 4587777654
No 77
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.94 E-value=7e-05 Score=79.88 Aligned_cols=120 Identities=10% Similarity=0.105 Sum_probs=89.5
Q ss_pred cCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc-----------------------------------
Q 002770 685 SDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE----------------------------------- 729 (883)
Q Consensus 685 ~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~----------------------------------- 729 (883)
..+..|...+++++++++|+.++++||++...+..+.+++++...
T Consensus 19 ~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~~~~~~~~~~~~~~~~~~~~~~~ 98 (249)
T TIGR01485 19 DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYYGGAEVPDQHWAEYLSEKWQRDI 98 (249)
T ss_pred ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEeCCCCcCCHHHHHHHhcccCHHH
Confidence 345678999999999999999999999999999999998886211
Q ss_pred ------------------------e-------------------------E---EE-----ecCc--cchHHHHHHHhhc
Q 002770 730 ------------------------Y-------------------------I---NS-----SLTP--QQKSEVISTLQTS 750 (883)
Q Consensus 730 ------------------------~-------------------------v---~~-----~~~p--~~K~~~v~~l~~~ 750 (883)
. + .+ .+.| ..|...++.+.+.
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ldi~~~~~~K~~al~~l~~~ 178 (249)
T TIGR01485 99 VVAITDKFEELKPQPDLEQRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYSSGKDLDILPQGSGKGQALQYLLQK 178 (249)
T ss_pred HHHHHhcCcccccCCccccCCeeEEEEechhhhhHHHHHHHHHHHhcCCCEEEEEECCceEEEEeCCCChHHHHHHHHHH
Confidence 0 0 00 1122 1455556655443
Q ss_pred ----CCeEEEEcCCccCHHHHHh-CCeeEEeecCCccHHHHhhcC-------EEEeCCChhhHHHHHH
Q 002770 751 ----GHHVAMVGDGINDAPSLAL-ADVGIALQIEAQENAASTAAS-------IILLGNKLSQVVDALD 806 (883)
Q Consensus 751 ----g~~v~~vGDg~ND~~al~~-AdvgIa~~~~~~~~~a~~~ad-------~vl~~~~~~~l~~~i~ 806 (883)
...|+++||+.||.+|++. ++.|++| +|+.+..++.++ ++.....-+++.+.++
T Consensus 179 ~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~--~na~~~~k~~~~~~~~~~~~~~~~~~~~Gi~e~l~ 244 (249)
T TIGR01485 179 LAMEPSQTLVCGDSGNDIELFEIGSVRGVIV--SNAQEELLQWYDENAKDKIYHASERCAGGIIEAIA 244 (249)
T ss_pred cCCCccCEEEEECChhHHHHHHccCCcEEEE--CCCHHHHHHHHHhcccCcEEEecCCCcHHHHHHHH
Confidence 3679999999999999998 6799999 888888887543 5555556777777664
No 78
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.89 E-value=8.2e-05 Score=80.37 Aligned_cols=119 Identities=20% Similarity=0.317 Sum_probs=83.5
Q ss_pred CCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEE-ecCccch--H----HHHHHHhhcCCeEEE
Q 002770 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINS-SLTPQQK--S----EVISTLQTSGHHVAM 756 (883)
Q Consensus 686 D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~-~~~p~~K--~----~~v~~l~~~g~~v~~ 756 (883)
.++.+++.++++.|+++|+++.++|+.+...+..+.+..|+.. +.+++ ...+..| . .+++.+.-..+.++|
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~ 179 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLF 179 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEEE
Confidence 3578999999999999999999999999999999999999853 12222 2223333 2 233333333568999
Q ss_pred EcCCccCHHHHHhCCe-eEEeecC--CccHHHHhhcCEEEeCCChhhHHHHHH
Q 002770 757 VGDGINDAPSLALADV-GIALQIE--AQENAASTAASIILLGNKLSQVVDALD 806 (883)
Q Consensus 757 vGDg~ND~~al~~Adv-gIa~~~~--~~~~~a~~~ad~vl~~~~~~~l~~~i~ 806 (883)
|||+.||+.+.+.|++ .+++..+ ...+..+..+|.++ +++..+..++.
T Consensus 180 IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi--~~l~el~~~~~ 230 (272)
T PRK13223 180 VGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVI--DDLRALLPGCA 230 (272)
T ss_pred ECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEE--CCHHHHHHHHh
Confidence 9999999999999997 3444212 23334455789887 45877775543
No 79
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.89 E-value=4.1e-05 Score=72.45 Aligned_cols=92 Identities=24% Similarity=0.348 Sum_probs=68.4
Q ss_pred ecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC--CceEEE-----------------------ecCcc
Q 002770 684 ISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIG--KEYINS-----------------------SLTPQ 738 (883)
Q Consensus 684 l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~--~~~v~~-----------------------~~~p~ 738 (883)
...++.+++.+.+++|++.|++++++||.....+....+.+|+. .+.+++ .-.++
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD 100 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHH
Confidence 34588999999999999999999999999999999999999972 112222 11222
Q ss_pred chHHHHHHHhhcCCeEEEEcCCccCHHHHHhC-CeeEE
Q 002770 739 QKSEVISTLQTSGHHVAMVGDGINDAPSLALA-DVGIA 775 (883)
Q Consensus 739 ~K~~~v~~l~~~g~~v~~vGDg~ND~~al~~A-dvgIa 775 (883)
.+..+.+.+......++++||+.||..|++.+ .-+|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 101 KLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred HHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 33344444444457899999999999999984 44443
No 80
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.84 E-value=6.9e-05 Score=81.10 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=73.0
Q ss_pred HHHHHCCCEEEEE---cCCcHHHHHHHHHHcCCCC--ceEEEecCcc-chHHHHHHHhh----cC-CeEEEEcCCccCHH
Q 002770 697 RSLQQKGIKTLLL---SGDREEAVAATAKEVGIGK--EYINSSLTPQ-QKSEVISTLQT----SG-HHVAMVGDGINDAP 765 (883)
Q Consensus 697 ~~L~~~Gi~v~~l---TGd~~~~a~~ia~~~gi~~--~~v~~~~~p~-~K~~~v~~l~~----~g-~~v~~vGDg~ND~~ 765 (883)
+.+++.++...++ +...........+..|+.. ...+-.+.|. .|...++.+.+ .. ..|+++||+.||.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~ 221 (273)
T PRK00192 142 RLAKDREFSEPFLWNGSEAAKERFEEALKRLGLKVTRGGRFLHLLGGGDKGKAVRWLKELYRRQDGVETIALGDSPNDLP 221 (273)
T ss_pred HHHHhcccCCceeecCchHHHHHHHHHHHHcCCEEEECCeEEEEeCCCCHHHHHHHHHHHHhccCCceEEEEcCChhhHH
Confidence 4455556664444 3333444444445556530 0112233333 78888877764 35 88999999999999
Q ss_pred HHHhCCeeEEeecCCccHHHH----hhc-CEEE--eCCChhhHHHHHH
Q 002770 766 SLALADVGIALQIEAQENAAS----TAA-SIIL--LGNKLSQVVDALD 806 (883)
Q Consensus 766 al~~AdvgIa~~~~~~~~~a~----~~a-d~vl--~~~~~~~l~~~i~ 806 (883)
|++.|++|++| +|+.+.+| ..| +.+. .+++-+++.+.++
T Consensus 222 m~~~ag~~vam--~NA~~~~k~~~~~~a~~~v~~~~~~~~~Gv~~~l~ 267 (273)
T PRK00192 222 MLEAADIAVVV--PGPDGPNPPLLPGIADGEFILASAPGPEGWAEAIN 267 (273)
T ss_pred HHHhCCeeEEe--CCCCCCCcccCccccCCceEEecCCCcHHHHHHHH
Confidence 99999999999 89999888 666 6777 5667888887765
No 81
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.82 E-value=6.3e-05 Score=77.96 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=79.0
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEEe-cCccch------HHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINSS-LTPQQK------SEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~~-~~p~~K------~~~v~~l~~~g~~v~~v 757 (883)
++.+++.++++.|+++|+++.++|+.+...+..+.+..|+.. +.+++. -....| ..+.+.+......++||
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 164 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYV 164 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEe
Confidence 468899999999999999999999999999999999999852 122322 111122 23333343345679999
Q ss_pred cCCccCHHHHHhCCeeEE-eecC--CccHHHHhhcCEEEeCCChhhHHH
Q 002770 758 GDGINDAPSLALADVGIA-LQIE--AQENAASTAASIILLGNKLSQVVD 803 (883)
Q Consensus 758 GDg~ND~~al~~AdvgIa-~~~~--~~~~~a~~~ad~vl~~~~~~~l~~ 803 (883)
||..||..+.+.|++-.. +..+ .........+|+++ +++..+..
T Consensus 165 gDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i--~~~~~l~~ 211 (213)
T TIGR01449 165 GDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLY--DSLNELPP 211 (213)
T ss_pred CCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEe--CCHHHHHh
Confidence 999999999999997433 3112 11223345688877 44666554
No 82
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.71 E-value=0.00027 Score=76.30 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=80.9
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--eEEE-ecCccchHHHHHHH-hh---cCCeEEEEcC
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE--YINS-SLTPQQKSEVISTL-QT---SGHHVAMVGD 759 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~--~v~~-~~~p~~K~~~v~~l-~~---~g~~v~~vGD 759 (883)
++-|++.++++.|+++|+++.++|+.+...+..+.+.+|+... .+.+ ...+ .|.+.+..+ ++ ....++||||
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~-~k~~~~~~~l~~~~~~p~~~l~IGD 220 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPIL-SKRRALSQLVAREGWQPAAVMYVGD 220 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCC-CCHHHHHHHHHHhCcChhHEEEECC
Confidence 4678999999999999999999999999999999999999632 1111 1111 243443332 22 3467999999
Q ss_pred CccCHHHHHhCCee-EEeecCCccH--HHHhhcCEEEeCCChhhHHHHH
Q 002770 760 GINDAPSLALADVG-IALQIEAQEN--AASTAASIILLGNKLSQVVDAL 805 (883)
Q Consensus 760 g~ND~~al~~Advg-Ia~~~~~~~~--~a~~~ad~vl~~~~~~~l~~~i 805 (883)
+.+|+.+-+.|++- |.+..+.... .....+|+++ +++..|..++
T Consensus 221 s~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i--~~~~eL~~~~ 267 (273)
T PRK13225 221 ETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLL--ETPSDLLQAV 267 (273)
T ss_pred CHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEE--CCHHHHHHHH
Confidence 99999999999963 3331122222 3344689887 5587777654
No 83
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.70 E-value=0.00042 Score=73.89 Aligned_cols=119 Identities=15% Similarity=0.233 Sum_probs=84.3
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC--CceEEEec-----------C--c----cchHHHHHH-
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIG--KEYINSSL-----------T--P----QQKSEVIST- 746 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~--~~~v~~~~-----------~--p----~~K~~~v~~- 746 (883)
+++||+.+.++.|++.|+++.++||-....+..+.+++|+. ...++|+. . | ..|.+.+..
T Consensus 121 ~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~~ 200 (277)
T TIGR01544 121 MLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVALR 200 (277)
T ss_pred ccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHHH
Confidence 56999999999999999999999999999999999999983 22443321 1 2 246554432
Q ss_pred ----Hh--hcCCeEEEEcCCccCHHHHHhCC-----eeEEeecCC---ccHHHHhhcCEEEeCCChhhHHHHH
Q 002770 747 ----LQ--TSGHHVAMVGDGINDAPSLALAD-----VGIALQIEA---QENAASTAASIILLGNKLSQVVDAL 805 (883)
Q Consensus 747 ----l~--~~g~~v~~vGDg~ND~~al~~Ad-----vgIa~~~~~---~~~~a~~~ad~vl~~~~~~~l~~~i 805 (883)
++ .....++++|||.||+.|..-.. +.|++-..+ .-+.-+++-|+|+.+|.-..++..|
T Consensus 201 ~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~t~~v~~~i 273 (277)
T TIGR01544 201 NTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDETLEVANSI 273 (277)
T ss_pred HHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCCCchHHHHH
Confidence 22 23467999999999999965441 345542111 2234567889999988766666554
No 84
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.66 E-value=0.00061 Score=73.30 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=90.1
Q ss_pred CeEEEEEecCceEEEEEEe--cCCCChhHHHHHHHHHH-CCCEEEEEcCCcHHHHHHHHHHcCCC-----------C-c-
Q 002770 666 KSVVYVGREGEGIIGAIAI--SDSLRHDAEHTVRSLQQ-KGIKTLLLSGDREEAVAATAKEVGIG-----------K-E- 729 (883)
Q Consensus 666 ~~~~~~a~~~~~~lG~i~l--~D~lr~~~~~~i~~L~~-~Gi~v~~lTGd~~~~a~~ia~~~gi~-----------~-~- 729 (883)
...+++-+||. ++-...= .-.+.++++++|++|++ .|++++++||++...+..+.+.+++. . .
T Consensus 14 ~~li~~D~DGT-Ll~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~ 92 (266)
T PRK10187 14 NYAWFFDLDGT-LAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGK 92 (266)
T ss_pred CEEEEEecCCC-CCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccceEEEeCCCeeecCCCC
Confidence 46677777876 4421000 12567899999999998 79999999999999998888776641 0 0
Q ss_pred ----------------------------------------------------------------------eEEEecCcc-
Q 002770 730 ----------------------------------------------------------------------YINSSLTPQ- 738 (883)
Q Consensus 730 ----------------------------------------------------------------------~v~~~~~p~- 738 (883)
..+.++.|.
T Consensus 93 ~~~~~l~~~~~~~i~~~l~~~~~~~pg~~ve~k~~~~~~h~r~~~~~~~~~~~l~~~i~~~~~~~~~~~g~~~lEi~p~g 172 (266)
T PRK10187 93 THIVHLPDAIARDISVQLHTALAQLPGAELEAKGMAFALHYRQAPQHEDALLALAQRITQIWPQLALQPGKCVVEIKPRG 172 (266)
T ss_pred eeeccCChhHHHHHHHHHHHHhccCCCcEEEeCCcEEEEECCCCCccHHHHHHHHHHHHhhCCceEEeCCCEEEEeeCCC
Confidence 001112222
Q ss_pred -chHHHHHHHhhc----CCeEEEEcCCccCHHHHHhC----CeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHH
Q 002770 739 -QKSEVISTLQTS----GHHVAMVGDGINDAPSLALA----DVGIALQIEAQENAASTAASIILLGNKLSQVVDALD 806 (883)
Q Consensus 739 -~K~~~v~~l~~~----g~~v~~vGDg~ND~~al~~A----dvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~ 806 (883)
+|...++.+.+. ...++++||+.||.+|++.+ +.||+| +++. ..|++.+. +...+..++.
T Consensus 173 ~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vav--g~a~----~~A~~~l~--~~~~v~~~L~ 241 (266)
T PRK10187 173 TNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKV--GTGA----TQASWRLA--GVPDVWSWLE 241 (266)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEE--CCCC----CcCeEeCC--CHHHHHHHHH
Confidence 455555554433 35799999999999999999 999999 6654 45788774 5666665554
No 85
>PLN02382 probable sucrose-phosphatase
Probab=97.64 E-value=0.00038 Score=79.46 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=84.6
Q ss_pred CCChhHHHHH-HHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCce-----------------------------------
Q 002770 687 SLRHDAEHTV-RSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEY----------------------------------- 730 (883)
Q Consensus 687 ~lr~~~~~~i-~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~----------------------------------- 730 (883)
.+.+...+++ +++++.|+.+++.||+.......+.++.++....
T Consensus 28 ~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~~~I~~nGt~I~~~~~~~~d~~w~~~l~~~w~~~~v 107 (413)
T PLN02382 28 NLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPDITIMSVGTEIAYGESMVPDHGWVEYLNKKWDREIV 107 (413)
T ss_pred chhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCCEEEEcCCcEEEeCCCCccChhHHHHHhccCChhhH
Confidence 3443444555 8899999999999999999999999998862110
Q ss_pred -------------------------------------------------E--------EEecCcc--chHHHHHHHhhc-
Q 002770 731 -------------------------------------------------I--------NSSLTPQ--QKSEVISTLQTS- 750 (883)
Q Consensus 731 -------------------------------------------------v--------~~~~~p~--~K~~~v~~l~~~- 750 (883)
+ +.++.|. .|...++.|.+.
T Consensus 108 ~~~~~~~~~l~~q~~~~~~~~Ki~~~~~~~~~~~~~~~l~~~~~~~g~~~~i~~s~~~~ldI~p~g~sKg~Al~~L~~~~ 187 (413)
T PLN02382 108 VEETSKFPELKLQPETEQRPHKVSFYVDKKKAQEVIKELSERLEKRGLDVKIIYSGGIDLDVLPQGAGKGQALAYLLKKL 187 (413)
T ss_pred HHHHhcCCCcccCCcccCCCeEEEEEechHHhHHHHHHHHHHHHhcCCcEEEEEECCcEEEEEeCCCCHHHHHHHHHHHh
Confidence 0 0112332 366666666554
Q ss_pred ---C---CeEEEEcCCccCHHHHHhCC-eeEEeecCCccHHHHhhc--------CEEEe-CCChhhHHHHHH
Q 002770 751 ---G---HHVAMVGDGINDAPSLALAD-VGIALQIEAQENAASTAA--------SIILL-GNKLSQVVDALD 806 (883)
Q Consensus 751 ---g---~~v~~vGDg~ND~~al~~Ad-vgIa~~~~~~~~~a~~~a--------d~vl~-~~~~~~l~~~i~ 806 (883)
| ..++++||+.||.+||+.++ .||+| +|+.+..++.+ +++.. +++-+++.++++
T Consensus 188 ~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam--~NA~~elk~~a~~~~~~~~~~~~a~~~~~~GI~~al~ 257 (413)
T PLN02382 188 KAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMV--SNAQEELLQWYAENAKDNPKIIHATERCAAGIIQAIG 257 (413)
T ss_pred hhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEE--cCCcHHHHHHHHhhccCCCcEEEcCCCCccHHHHHHH
Confidence 2 47899999999999999999 69999 88998888743 55533 445677777665
No 86
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.58 E-value=0.00031 Score=73.86 Aligned_cols=117 Identities=11% Similarity=0.106 Sum_probs=81.0
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--eEEE-ecCccc------hHHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE--YINS-SLTPQQ------KSEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~--~v~~-~~~p~~------K~~~v~~l~~~g~~v~~v 757 (883)
++.|++.+.++.|++.|+++.++|+.+...+..+.+..|+... .+.+ ...+.. =..+++.+.-....++||
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~I 174 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYV 174 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEe
Confidence 4688999999999999999999999999988888899998531 2222 111112 244555555556789999
Q ss_pred cCCccCHHHHHhCCee-EEeecCC--cc-HHHHhhcCEEEeCCChhhHHHHH
Q 002770 758 GDGINDAPSLALADVG-IALQIEA--QE-NAASTAASIILLGNKLSQVVDAL 805 (883)
Q Consensus 758 GDg~ND~~al~~Advg-Ia~~~~~--~~-~~a~~~ad~vl~~~~~~~l~~~i 805 (883)
||+.||..+.+.|++. |++..+. .. ......+|+++ +++..+...+
T Consensus 175 GDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i--~~~~el~~~~ 224 (229)
T PRK13226 175 GDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLV--EQPQLLWNPA 224 (229)
T ss_pred CCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeee--CCHHHHHHHh
Confidence 9999999999999964 3331122 11 22345688888 4466665544
No 87
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.54 E-value=0.00044 Score=55.26 Aligned_cols=65 Identities=15% Similarity=0.416 Sum_probs=55.6
Q ss_pred EEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcc
Q 002770 73 TVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEA 146 (883)
Q Consensus 73 ~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~ 146 (883)
+..+.+.||+|.+|++.+++.+.+.+++....+++..++..+.+++.. .....+...+.+.||.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQ---------ATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCC---------CCHHHHHHHHHHcCCCc
Confidence 457999999999999999999999999999999999999999998654 35566766678888864
No 88
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.46 E-value=0.0002 Score=89.57 Aligned_cols=64 Identities=30% Similarity=0.503 Sum_probs=54.9
Q ss_pred eEEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCccccc
Q 002770 72 STVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKRR 149 (883)
Q Consensus 72 ~~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~~ 149 (883)
+++++.|+||+|++|+.+||+++++++||.+++|++. +..+..+ .+.+.+.+.++++||++...
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~------------~~~~~i~~~i~~~Gy~~~~~ 66 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT------------ASAEALIETIKQAGYDASVS 66 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec------------CCHHHHHHHHHhcCCccccc
Confidence 4689999999999999999999999999999999994 4455432 35689999999999998764
No 89
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.45 E-value=0.00039 Score=72.68 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=77.0
Q ss_pred CCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--eEEEe-----cCccchHHHHHHHhhc---CCeEE
Q 002770 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE--YINSS-----LTPQQKSEVISTLQTS---GHHVA 755 (883)
Q Consensus 686 D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~--~v~~~-----~~p~~K~~~v~~l~~~---g~~v~ 755 (883)
-++.|++.++++.|++.|+++.++|+........+.+.+|+..- .+++. ..|+.. -+.+.+++. .+.++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~-~~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPE-VYLNCAAKLGVDPLTCV 169 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHH-HHHHHHHHcCCCHHHeE
Confidence 35789999999999999999999999999999999999998531 22221 122221 222333333 36799
Q ss_pred EEcCCccCHHHHHhCCeeEEeecCC--ccHHHHhhcCEEEeCCChhhHH
Q 002770 756 MVGDGINDAPSLALADVGIALQIEA--QENAASTAASIILLGNKLSQVV 802 (883)
Q Consensus 756 ~vGDg~ND~~al~~AdvgIa~~~~~--~~~~a~~~ad~vl~~~~~~~l~ 802 (883)
||||..||+.+.+.|++....-... ..+.-...+|.++ .++..+.
T Consensus 170 ~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~--~~~~dl~ 216 (222)
T PRK10826 170 ALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKL--ESLTELT 216 (222)
T ss_pred EEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheec--cCHHHHh
Confidence 9999999999999999754331111 1112234577776 3366654
No 90
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.44 E-value=0.0014 Score=69.79 Aligned_cols=55 Identities=13% Similarity=0.255 Sum_probs=44.3
Q ss_pred EEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCC
Q 002770 668 VVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGI 726 (883)
Q Consensus 668 ~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi 726 (883)
+++.-.||. ++ --.+...+.++++|++|+++|+.++++||+.......+.+++|+
T Consensus 3 LIftDLDGT-LL---d~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl 57 (302)
T PRK12702 3 LVLSSLDGS-LL---DLEFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRL 57 (302)
T ss_pred EEEEeCCCC-Cc---CCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 344445554 32 22445778899999999999999999999999999999999997
No 91
>PRK06769 hypothetical protein; Validated
Probab=97.43 E-value=0.00058 Score=68.50 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=73.1
Q ss_pred CCeEEEEEecCceEEEEEEecC----CCChhHHHHHHHHHHCCCEEEEEcCCcHH--------HHHHHHHHcCCCCceEE
Q 002770 665 SKSVVYVGREGEGIIGAIAISD----SLRHDAEHTVRSLQQKGIKTLLLSGDREE--------AVAATAKEVGIGKEYIN 732 (883)
Q Consensus 665 g~~~~~~a~~~~~~lG~i~l~D----~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~--------~a~~ia~~~gi~~~~v~ 732 (883)
+.+.+++-+||. +.|-..+.+ ++-|++.+++++|++.|+++.++|+.... ......+..|+. .++
T Consensus 3 ~~~~~~~d~d~~-~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~--~~~ 79 (173)
T PRK06769 3 NIQAIFIDRDGT-IGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFD--DIY 79 (173)
T ss_pred CCcEEEEeCCCc-ccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcC--EEE
Confidence 456777777776 544422222 35799999999999999999999987642 233445667885 333
Q ss_pred Ee-c-C----ccch------HHHHHHHhhcCCeEEEEcCCccCHHHHHhCCe-eEEe
Q 002770 733 SS-L-T----PQQK------SEVISTLQTSGHHVAMVGDGINDAPSLALADV-GIAL 776 (883)
Q Consensus 733 ~~-~-~----p~~K------~~~v~~l~~~g~~v~~vGDg~ND~~al~~Adv-gIa~ 776 (883)
.. . . +..| ..+++.+....+.++||||..+|+.+-+.|++ .|.+
T Consensus 80 ~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v 136 (173)
T PRK06769 80 LCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILV 136 (173)
T ss_pred ECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEE
Confidence 21 1 1 1123 44444454445689999999999999999996 4444
No 92
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.42 E-value=0.00074 Score=70.40 Aligned_cols=117 Identities=19% Similarity=0.233 Sum_probs=79.9
Q ss_pred CCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC--C--ceEEEec-----Cccc--hHHHHHHHhhc-CCe
Q 002770 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIG--K--EYINSSL-----TPQQ--KSEVISTLQTS-GHH 753 (883)
Q Consensus 686 D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~--~--~~v~~~~-----~p~~--K~~~v~~l~~~-g~~ 753 (883)
.++.+|+.+.++.|+++|+++.++|+.....+..+.+.+|+. . +.+++.- .|+. =...++.+.-. ...
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQS 165 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhH
Confidence 367899999999999999999999999999999999999986 1 2333321 1211 12233333323 367
Q ss_pred EEEEcCCccCHHHHHhCCeeE--EeecCCcc--HHHHhhcCEEEeCCChhhHHHH
Q 002770 754 VAMVGDGINDAPSLALADVGI--ALQIEAQE--NAASTAASIILLGNKLSQVVDA 804 (883)
Q Consensus 754 v~~vGDg~ND~~al~~AdvgI--a~~~~~~~--~~a~~~ad~vl~~~~~~~l~~~ 804 (883)
++||||+.+|+.+-+.|++.. ++..+... ......+|.++ +++..+..+
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i--~~~~~l~~~ 218 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVL--DSVADLPAL 218 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceee--cCHHHHHHh
Confidence 999999999999999999875 34212112 12233577776 446666554
No 93
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.39 E-value=0.00071 Score=72.30 Aligned_cols=86 Identities=20% Similarity=0.156 Sum_probs=63.9
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC---ceEEEe-c----Ccc--chHHHHHHHhhc-CCeEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK---EYINSS-L----TPQ--QKSEVISTLQTS-GHHVA 755 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~---~~v~~~-~----~p~--~K~~~v~~l~~~-g~~v~ 755 (883)
++.|++.+.++.|+++|+++.++|+.....+..+.+.+|+.. +.+++. - .|+ -=...++.+.-. .+.++
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l 178 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACV 178 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchheE
Confidence 357899999999999999999999999999999999988853 223221 1 121 113333334322 45699
Q ss_pred EEcCCccCHHHHHhCCe
Q 002770 756 MVGDGINDAPSLALADV 772 (883)
Q Consensus 756 ~vGDg~ND~~al~~Adv 772 (883)
||||..+|+.+-+.|++
T Consensus 179 ~IGDs~~Di~aA~~aGi 195 (253)
T TIGR01422 179 KVGDTVPDIEEGRNAGM 195 (253)
T ss_pred EECCcHHHHHHHHHCCC
Confidence 99999999999999995
No 94
>PRK11590 hypothetical protein; Provisional
Probab=97.34 E-value=0.0017 Score=67.46 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=70.8
Q ss_pred CCChhHHHHH-HHHHHCCCEEEEEcCCcHHHHHHHHHHcCC--CCceEEE-------------ecCccchHHHHHHH-hh
Q 002770 687 SLRHDAEHTV-RSLQQKGIKTLLLSGDREEAVAATAKEVGI--GKEYINS-------------SLTPQQKSEVISTL-QT 749 (883)
Q Consensus 687 ~lr~~~~~~i-~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi--~~~~v~~-------------~~~p~~K~~~v~~l-~~ 749 (883)
.+.|++.+.| +.+++.|++++++|+.....+..+++.+|+ ....+.. ++..++|...++.. ..
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~~ 174 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKIGT 174 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHHHhCC
Confidence 3478999999 578889999999999999999999999994 1112221 24556788777654 33
Q ss_pred cCCeEEEEcCCccCHHHHHhCCeeEEe
Q 002770 750 SGHHVAMVGDGINDAPSLALADVGIAL 776 (883)
Q Consensus 750 ~g~~v~~vGDg~ND~~al~~AdvgIa~ 776 (883)
......+-||..||.|||+.|+-.+++
T Consensus 175 ~~~~~~aY~Ds~~D~pmL~~a~~~~~v 201 (211)
T PRK11590 175 PLRLYSGYSDSKQDNPLLYFCQHRWRV 201 (211)
T ss_pred CcceEEEecCCcccHHHHHhCCCCEEE
Confidence 344556889999999999999999999
No 95
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.34 E-value=0.0013 Score=68.13 Aligned_cols=89 Identities=16% Similarity=0.130 Sum_probs=69.5
Q ss_pred CCChhHHHHHH-HHHHCCCEEEEEcCCcHHHHHHHHHHcCC---CCceEEE-------------ecCccchHHHHHHH-h
Q 002770 687 SLRHDAEHTVR-SLQQKGIKTLLLSGDREEAVAATAKEVGI---GKEYINS-------------SLTPQQKSEVISTL-Q 748 (883)
Q Consensus 687 ~lr~~~~~~i~-~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi---~~~~v~~-------------~~~p~~K~~~v~~l-~ 748 (883)
.+.|++.+.|+ .++++|++++++|+-....+..+++..++ . +.+.. ++..++|...++.. .
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~-~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~~ 172 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRL-NLIASQIERGNGGWVLPLRCLGHEKVAQLEQKIG 172 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccC-cEEEEEeEEeCCceEcCccCCChHHHHHHHHHhC
Confidence 35899999995 88999999999999999999999988544 2 12222 24456788777654 3
Q ss_pred hcCCeEEEEcCCccCHHHHHhCCeeEEe
Q 002770 749 TSGHHVAMVGDGINDAPSLALADVGIAL 776 (883)
Q Consensus 749 ~~g~~v~~vGDg~ND~~al~~AdvgIa~ 776 (883)
.......+-||+.||.|||+.||..+++
T Consensus 173 ~~~~~~~aYsDS~~D~pmL~~a~~~~~V 200 (210)
T TIGR01545 173 SPLKLYSGYSDSKQDNPLLAFCEHRWRV 200 (210)
T ss_pred CChhheEEecCCcccHHHHHhCCCcEEE
Confidence 2334556899999999999999999999
No 96
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.33 E-value=0.0012 Score=71.31 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=62.3
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC---ceEEEe-cCccch---HHHHHHHhhc----CCeEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK---EYINSS-LTPQQK---SEVISTLQTS----GHHVA 755 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~---~~v~~~-~~p~~K---~~~v~~l~~~----g~~v~ 755 (883)
.+-|++.++++.|++.|+++.++||.....+..+.+..|+.. +.+++. -.+..| .-+.+.+++. ...++
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l 180 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACV 180 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceE
Confidence 457899999999999999999999999999888888776532 233322 111122 2233333333 35699
Q ss_pred EEcCCccCHHHHHhCCe
Q 002770 756 MVGDGINDAPSLALADV 772 (883)
Q Consensus 756 ~vGDg~ND~~al~~Adv 772 (883)
||||+.+|+.+-+.|++
T Consensus 181 ~IGDs~~Di~aA~~aG~ 197 (267)
T PRK13478 181 KVDDTVPGIEEGLNAGM 197 (267)
T ss_pred EEcCcHHHHHHHHHCCC
Confidence 99999999999999996
No 97
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.32 E-value=0.0011 Score=69.38 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=38.8
Q ss_pred cCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCC
Q 002770 685 SDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGI 726 (883)
Q Consensus 685 ~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi 726 (883)
.+..-+++.++|++|+++|++++++||++...+..+.+++|+
T Consensus 13 ~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 13 PGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 456677899999999999999999999999999999999997
No 98
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.26 E-value=0.0014 Score=69.76 Aligned_cols=112 Identities=11% Similarity=0.172 Sum_probs=77.7
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceE-EEec----Ccc--chHHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYI-NSSL----TPQ--QKSEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v-~~~~----~p~--~K~~~v~~l~~~g~~v~~v 757 (883)
++.|++.++++.|+++|+++.++|+.....+....+.+|+.. +.+ .+.- .|+ --....+.+.-....++||
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~v 187 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVF 187 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEEE
Confidence 457899999999999999999999999999999999999862 122 2221 122 2244445554455779999
Q ss_pred cCCccCHHHHHhCCee-EEeecCCc-cHHHHhhcCEEEeCCChhh
Q 002770 758 GDGINDAPSLALADVG-IALQIEAQ-ENAASTAASIILLGNKLSQ 800 (883)
Q Consensus 758 GDg~ND~~al~~Advg-Ia~~~~~~-~~~a~~~ad~vl~~~~~~~ 800 (883)
||..+|+.+-+.|++- |++..+.. .+.....+|+++.+ +..
T Consensus 188 gDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~--~~e 230 (248)
T PLN02770 188 EDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKD--YED 230 (248)
T ss_pred cCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEecc--chh
Confidence 9999999999999963 33311222 22223468888744 444
No 99
>PLN02957 copper, zinc superoxide dismutase
Probab=97.24 E-value=0.0011 Score=70.01 Aligned_cols=69 Identities=25% Similarity=0.343 Sum_probs=59.7
Q ss_pred ceEEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcccccc
Q 002770 71 DSTVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKRRV 150 (883)
Q Consensus 71 ~~~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~~~ 150 (883)
.+++.+.+ ||+|.+|+..|++.+.+.+||..+.+++..+++.+.++ ...+++.+.+++.||.+.+..
T Consensus 5 ~~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~------------~~~~~I~~aIe~~Gy~a~~~~ 71 (238)
T PLN02957 5 ELLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS------------SPVKAMTAALEQTGRKARLIG 71 (238)
T ss_pred cEEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec------------CCHHHHHHHHHHcCCcEEEec
Confidence 45677888 79999999999999999999999999999999999873 246788899999999987664
Q ss_pred cC
Q 002770 151 SG 152 (883)
Q Consensus 151 ~~ 152 (883)
.+
T Consensus 72 ~~ 73 (238)
T PLN02957 72 QG 73 (238)
T ss_pred CC
Confidence 43
No 100
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.24 E-value=0.0018 Score=69.39 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=78.6
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEEe-c----Cc--cchHHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINSS-L----TP--QQKSEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~~-~----~p--~~K~~~v~~l~~~g~~v~~v 757 (883)
++.+++.+.++.|+++|+++.++|+.+...+..+.+.+|+.. +.+.+. - .| +-=...++.+.-....++||
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~I 188 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVF 188 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEE
Confidence 457899999999999999999999999999999999999852 122221 1 22 11134444444445679999
Q ss_pred cCCccCHHHHHhCCe-eEEeecCCccHHHHhhcCEEEeCCChhhHH
Q 002770 758 GDGINDAPSLALADV-GIALQIEAQENAASTAASIILLGNKLSQVV 802 (883)
Q Consensus 758 GDg~ND~~al~~Adv-gIa~~~~~~~~~a~~~ad~vl~~~~~~~l~ 802 (883)
||..+|+.+-+.|++ .|++. +.........+|+++.+ +..+.
T Consensus 189 gDs~~Di~aA~~aG~~~i~v~-g~~~~~~l~~ad~vi~~--~~el~ 231 (260)
T PLN03243 189 GNSNSSVEAAHDGCMKCVAVA-GKHPVYELSAGDLVVRR--LDDLS 231 (260)
T ss_pred cCCHHHHHHHHHcCCEEEEEe-cCCchhhhccCCEEeCC--HHHHH
Confidence 999999999999997 34442 22222233457887633 55543
No 101
>PTZ00174 phosphomannomutase; Provisional
Probab=97.23 E-value=0.0024 Score=68.00 Aligned_cols=52 Identities=13% Similarity=0.315 Sum_probs=39.5
Q ss_pred eEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHH
Q 002770 667 SVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAK 722 (883)
Q Consensus 667 ~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~ 722 (883)
.++++-.||. ++ .=..++.+.++++|++++++|++++++||++........+
T Consensus 6 klia~DlDGT-LL---~~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 6 TILLFDVDGT-LT---KPRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred eEEEEECcCC-Cc---CCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 4555555654 32 1223589999999999999999999999999997776554
No 102
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.20 E-value=0.0016 Score=62.03 Aligned_cols=87 Identities=17% Similarity=0.306 Sum_probs=65.0
Q ss_pred CCCChhHHHHHHHHHHCCCEEEEEcCCc--------HHHHHHHHHHcCCCCceEEEe---cCccc--hHHHHHHHh-hcC
Q 002770 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDR--------EEAVAATAKEVGIGKEYINSS---LTPQQ--KSEVISTLQ-TSG 751 (883)
Q Consensus 686 D~lr~~~~~~i~~L~~~Gi~v~~lTGd~--------~~~a~~ia~~~gi~~~~v~~~---~~p~~--K~~~v~~l~-~~g 751 (883)
-++.+++.+++++|++.|++++++|+.. ......+.+.+|+.....+.. ..|+. =..+++.++ -..
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~ 103 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACPHCRKPKPGMFLEALKRFNEIDP 103 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECCCCCCCChHHHHHHHHHcCCCCh
Confidence 3578999999999999999999999998 778888999999863322211 12211 134444442 445
Q ss_pred CeEEEEcC-CccCHHHHHhCCe
Q 002770 752 HHVAMVGD-GINDAPSLALADV 772 (883)
Q Consensus 752 ~~v~~vGD-g~ND~~al~~Adv 772 (883)
+.++|||| ..+|+.+.+.+++
T Consensus 104 ~~~v~IGD~~~~Di~~A~~~Gi 125 (132)
T TIGR01662 104 EESVYVGDQDLTDLQAAKRAGL 125 (132)
T ss_pred hheEEEcCCCcccHHHHHHCCC
Confidence 78999999 5999999999986
No 103
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.18 E-value=0.0035 Score=74.16 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=44.0
Q ss_pred CeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCC
Q 002770 666 KSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGI 726 (883)
Q Consensus 666 ~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi 726 (883)
..+++.-.||. ++. -.+.+.+.+.++|++|+++|+.++++||+....+..+++++|+
T Consensus 416 ~KLIfsDLDGT-LLd---~d~~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl 472 (694)
T PRK14502 416 KKIVYTDLDGT-LLN---PLTYSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGI 472 (694)
T ss_pred eeEEEEECcCC-CcC---CCCccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 34555555665 321 1223556889999999999999999999999999999999986
No 104
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.18 E-value=0.0011 Score=69.64 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=60.8
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCC----cHHHHHHHHHHcCCCC--ceEEEe-cCccchHHHHHHHhhcCCeEEEEcCCc
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGD----REEAVAATAKEVGIGK--EYINSS-LTPQQKSEVISTLQTSGHHVAMVGDGI 761 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd----~~~~a~~ia~~~gi~~--~~v~~~-~~p~~K~~~v~~l~~~g~~v~~vGDg~ 761 (883)
.+++++.++.++++|+++.++|+. ...++..+.+.+|++. +.+++. .....|......+++.+ .++|+||..
T Consensus 116 ~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~~l~~~~-i~i~vGDs~ 194 (237)
T TIGR01672 116 KEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQWIQDKN-IRIHYGDSD 194 (237)
T ss_pred hhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHHHHHhCC-CeEEEeCCH
Confidence 445999999999999999999998 7789999999999963 122221 11111211223445555 479999999
Q ss_pred cCHHHHHhCCe
Q 002770 762 NDAPSLALADV 772 (883)
Q Consensus 762 ND~~al~~Adv 772 (883)
||..+-+.|++
T Consensus 195 ~DI~aAk~AGi 205 (237)
T TIGR01672 195 NDITAAKEAGA 205 (237)
T ss_pred HHHHHHHHCCC
Confidence 99999999985
No 105
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.16 E-value=0.002 Score=75.16 Aligned_cols=120 Identities=15% Similarity=0.227 Sum_probs=82.6
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEE-e-cCccchHHHHHH-Hhh-cCCeEEEEcCC
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINS-S-LTPQQKSEVIST-LQT-SGHHVAMVGDG 760 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~-~-~~p~~K~~~v~~-l~~-~g~~v~~vGDg 760 (883)
++.||+.+.++.|++.|+++.++|+.....+..+.+.+|+.. +.+.+ + ..+..|-+.+.. +++ ..+.++||||.
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~~~~~v~VGDs 409 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYDIKEAAVVGDR 409 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcCcceEEEEeCC
Confidence 568999999999999999999999999999999999999852 12222 1 111123223222 222 24679999999
Q ss_pred ccCHHHHHhCCe-eEEeecCCccHHHHhhcCEEEeCCChhhHHHHHHHH
Q 002770 761 INDAPSLALADV-GIALQIEAQENAASTAASIILLGNKLSQVVDALDLA 808 (883)
Q Consensus 761 ~ND~~al~~Adv-gIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~~~ 808 (883)
.+|+.+-+.|++ .|++..+...+.....+|+++ +++..+..++...
T Consensus 410 ~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i--~~l~el~~~l~~~ 456 (459)
T PRK06698 410 LSDINAAKDNGLIAIGCNFDFAQEDELAQADIVI--DDLLELKGILSTV 456 (459)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEe--CCHHHHHHHHHHH
Confidence 999999999996 444422222222234688887 4577777766544
No 106
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.0012 Score=64.12 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=74.1
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcC----CCCceEEEe------------------cCccchHHHH
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVG----IGKEYINSS------------------LTPQQKSEVI 744 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~g----i~~~~v~~~------------------~~p~~K~~~v 744 (883)
.++|+-++.++.+++++++++++|+....-...+-++++ |...+++++ .--.+|...|
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~vI 152 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSVI 152 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcchhH
Confidence 368999999999999999999999999999998888887 432222211 1234799999
Q ss_pred HHHhhcCCeEEEEcCCccCHHHHHhCCeeEEe
Q 002770 745 STLQTSGHHVAMVGDGINDAPSLALADVGIAL 776 (883)
Q Consensus 745 ~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~ 776 (883)
+.|++..+.+.|+|||+.|..|-+.+|+-.|=
T Consensus 153 ~~l~e~~e~~fy~GDsvsDlsaaklsDllFAK 184 (220)
T COG4359 153 HELSEPNESIFYCGDSVSDLSAAKLSDLLFAK 184 (220)
T ss_pred HHhhcCCceEEEecCCcccccHhhhhhhHhhH
Confidence 99999999999999999999999998887764
No 107
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.12 E-value=0.0041 Score=62.79 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcH---------------HHHHHHHHHcCCCCceEEEe----------cCc--cc
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDRE---------------EAVAATAKEVGIGKEYINSS----------LTP--QQ 739 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~---------------~~a~~ia~~~gi~~~~v~~~----------~~p--~~ 739 (883)
.+.+++.+++++|++.|+++.++|..+. .....+.+..|+.-+.++.. ..| +-
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~~~~~~~~~~KP~p~~ 108 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPHHPEDGCDCRKPKPGM 108 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcCCCCCHHH
Confidence 3578999999999999999999998762 22233445567632233321 112 22
Q ss_pred hHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCee-EEeecCCccH-HHHhhc--CEEEeCCChhhHHHHHH
Q 002770 740 KSEVISTLQTSGHHVAMVGDGINDAPSLALADVG-IALQIEAQEN-AASTAA--SIILLGNKLSQVVDALD 806 (883)
Q Consensus 740 K~~~v~~l~~~g~~v~~vGDg~ND~~al~~Advg-Ia~~~~~~~~-~a~~~a--d~vl~~~~~~~l~~~i~ 806 (883)
-...++.+.-..+.++||||..+|+.+-+.|++. |.+..+.... .....+ |+++ +++..+..++.
T Consensus 109 ~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii--~~l~el~~~l~ 177 (181)
T PRK08942 109 LLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVL--DSLADLPQALK 177 (181)
T ss_pred HHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceee--cCHHHHHHHHH
Confidence 2344444544557899999999999999999963 3331122211 122235 7776 44777666543
No 108
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.11 E-value=0.0011 Score=68.03 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=64.1
Q ss_pred cCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--eEEE------ecCccchHHHHHHHhhcCCeEEE
Q 002770 685 SDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE--YINS------SLTPQQKSEVISTLQTSGHHVAM 756 (883)
Q Consensus 685 ~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~--~v~~------~~~p~~K~~~v~~l~~~g~~v~~ 756 (883)
.+++.+++.++++.|++.|+++.++||.+...+..+.+.+|+..- .+.+ ...|+.-..+++.+.-....++|
T Consensus 104 ~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~ 183 (197)
T TIGR01548 104 EDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAM 183 (197)
T ss_pred ccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEE
Confidence 344666779999999999999999999999999999999998521 1111 11222224455555555678999
Q ss_pred EcCCccCHHHHHhC
Q 002770 757 VGDGINDAPSLALA 770 (883)
Q Consensus 757 vGDg~ND~~al~~A 770 (883)
|||+.+|+.+-+.|
T Consensus 184 vGD~~~Di~aA~~a 197 (197)
T TIGR01548 184 VGDTVDDIITGRKA 197 (197)
T ss_pred EeCCHHHHHHHHhC
Confidence 99999999987764
No 109
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.03 E-value=0.0023 Score=67.21 Aligned_cols=85 Identities=20% Similarity=0.254 Sum_probs=63.6
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCc----HHHHHHHHHHcCCCCc----eEEEecCc--cchHHHHHHHhhcCCeEEEE
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDR----EEAVAATAKEVGIGKE----YINSSLTP--QQKSEVISTLQTSGHHVAMV 757 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~----~~~a~~ia~~~gi~~~----~v~~~~~p--~~K~~~v~~l~~~g~~v~~v 757 (883)
+.+++++.++.|++.|+++.++||+. ..++..+.+..|++.+ .+++.-++ ++|... +++.+ .++|+
T Consensus 115 p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~~---l~~~~-i~I~I 190 (237)
T PRK11009 115 PKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQW---LKKKN-IRIFY 190 (237)
T ss_pred chHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHHH---HHhcC-CeEEE
Confidence 57889999999999999999999964 6688999999999321 22322222 345543 44444 48999
Q ss_pred cCCccCHHHHHhCCe-eEEe
Q 002770 758 GDGINDAPSLALADV-GIAL 776 (883)
Q Consensus 758 GDg~ND~~al~~Adv-gIa~ 776 (883)
||..+|..+-+.|++ +|.+
T Consensus 191 GDs~~Di~aA~~AGi~~I~v 210 (237)
T PRK11009 191 GDSDNDITAAREAGARGIRI 210 (237)
T ss_pred cCCHHHHHHHHHcCCcEEEE
Confidence 999999999999996 4444
No 110
>PRK11587 putative phosphatase; Provisional
Probab=97.01 E-value=0.0045 Score=64.49 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=73.1
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc-eEEEe-----cCcc--chHHHHHHHhhcCCeEEEEc
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE-YINSS-----LTPQ--QKSEVISTLQTSGHHVAMVG 758 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~-~v~~~-----~~p~--~K~~~v~~l~~~g~~v~~vG 758 (883)
++.|++.++++.|+++|+++.++|+.+...+...-+..|+... .+.+. ..|+ -=....+.+.-....++|||
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~ig 162 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVE 162 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEEe
Confidence 4678999999999999999999999887777777777887422 22221 1222 11333344444457899999
Q ss_pred CCccCHHHHHhCCe-eEEeecCCccHHHHhhcCEEEeC
Q 002770 759 DGINDAPSLALADV-GIALQIEAQENAASTAASIILLG 795 (883)
Q Consensus 759 Dg~ND~~al~~Adv-gIa~~~~~~~~~a~~~ad~vl~~ 795 (883)
|..+|+.+-+.|++ .|++..+. .......+|+++.+
T Consensus 163 Ds~~di~aA~~aG~~~i~v~~~~-~~~~~~~~~~~~~~ 199 (218)
T PRK11587 163 DAPAGVLSGLAAGCHVIAVNAPA-DTPRLDEVDLVLHS 199 (218)
T ss_pred cchhhhHHHHHCCCEEEEECCCC-chhhhccCCEEecc
Confidence 99999999999997 46662222 22233457777633
No 111
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.98 E-value=0.0034 Score=64.57 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCC
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGI 726 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi 726 (883)
++.+++.+++++|++.|++++++||+....+..+.+.++.
T Consensus 17 ~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~ 56 (204)
T TIGR01484 17 ELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLPL 56 (204)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCCC
Confidence 5789999999999999999999999999999999887553
No 112
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.96 E-value=0.0047 Score=69.10 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=78.1
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEEe-----cCcc--chHHHHHHHhhcCCeEEEEc
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINSS-----LTPQ--QKSEVISTLQTSGHHVAMVG 758 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~~-----~~p~--~K~~~v~~l~~~g~~v~~vG 758 (883)
+.+|+.+.++.|+++|+++.++|+.+...+..+-+.+||.. +.+++. -.|+ -=...++.+.-....++|||
T Consensus 217 l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~IG 296 (381)
T PLN02575 217 LRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVFG 296 (381)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEEEc
Confidence 57899999999999999999999999999999999999853 122221 1222 12344555555567899999
Q ss_pred CCccCHHHHHhCCe-eEEeecCCccH-HHHhhcCEEEeCCChhhH
Q 002770 759 DGINDAPSLALADV-GIALQIEAQEN-AASTAASIILLGNKLSQV 801 (883)
Q Consensus 759 Dg~ND~~al~~Adv-gIa~~~~~~~~-~a~~~ad~vl~~~~~~~l 801 (883)
|..+|+.|-+.|++ .|++ ..+.+ .-...+|+++ +++..+
T Consensus 297 DS~~DIeAAk~AGm~~IgV--~~~~~~~~l~~Ad~iI--~s~~EL 337 (381)
T PLN02575 297 NSNQTVEAAHDARMKCVAV--ASKHPIYELGAADLVV--RRLDEL 337 (381)
T ss_pred CCHHHHHHHHHcCCEEEEE--CCCCChhHhcCCCEEE--CCHHHH
Confidence 99999999999997 3343 22222 2223588876 446655
No 113
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.93 E-value=0.0032 Score=65.61 Aligned_cols=90 Identities=14% Similarity=0.227 Sum_probs=66.1
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEEe-----cCccch--HHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINSS-----LTPQQK--SEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~~-----~~p~~K--~~~v~~l~~~g~~v~~v 757 (883)
++.|++.+++++|+++|++++++|+-+...+....+.+|+.. +.+++. ..|+.. ..+.+.+.-....++||
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~i 173 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMV 173 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEE
Confidence 468899999999999999999999998888888899999852 122221 123221 23333333334679999
Q ss_pred cCCc-cCHHHHHhCCe-eEEe
Q 002770 758 GDGI-NDAPSLALADV-GIAL 776 (883)
Q Consensus 758 GDg~-ND~~al~~Adv-gIa~ 776 (883)
||.. +|+.+-+.|++ .|.+
T Consensus 174 gDs~~~di~~A~~aG~~~i~~ 194 (221)
T TIGR02253 174 GDRLDKDIKGAKNLGMKTVWI 194 (221)
T ss_pred CCChHHHHHHHHHCCCEEEEE
Confidence 9998 99999999997 4555
No 114
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.0015 Score=64.22 Aligned_cols=69 Identities=23% Similarity=0.369 Sum_probs=59.1
Q ss_pred ceEEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcccccc
Q 002770 71 DSTVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKRRV 150 (883)
Q Consensus 71 ~~~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~~~ 150 (883)
.-+.+|.|+ |+|.+|+..|++.|+.++||.++.++++...+.|.-.. .+.++.+.++.+|-++-++.
T Consensus 6 ~~~~efaV~-M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~------------p~s~i~~~le~tGr~Avl~G 72 (247)
T KOG4656|consen 6 TYEAEFAVQ-MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSV------------PPSEIQNTLENTGRDAVLRG 72 (247)
T ss_pred ceeEEEEEe-chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccC------------ChHHHHHHHHhhChheEEec
Confidence 345667765 99999999999999999999999999999998887433 56899999999999998875
Q ss_pred cC
Q 002770 151 SG 152 (883)
Q Consensus 151 ~~ 152 (883)
.+
T Consensus 73 ~G 74 (247)
T KOG4656|consen 73 AG 74 (247)
T ss_pred CC
Confidence 54
No 115
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.90 E-value=0.0033 Score=63.13 Aligned_cols=117 Identities=21% Similarity=0.309 Sum_probs=86.7
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc-------------------------------------
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE------------------------------------- 729 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~------------------------------------- 729 (883)
.+-|++.++++.|++. ...+++|-.-.+-+.++|+.+|++..
T Consensus 83 ~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L~~~~~~~~~~geel 161 (315)
T COG4030 83 KLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPRGELHGTEVDLDSIAVPEEEREELLSIIDVIASLSGEEL 161 (315)
T ss_pred ccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCCccccccccccCccccCChHHHHHHHHhcCccccccHHHH
Confidence 4578999999999876 56677777777888999999998422
Q ss_pred -----eEEEecCccch---------------HHHHHHHhhc---CCeEEEEcCCccCHHHHHhCC----eeEEeecCCcc
Q 002770 730 -----YINSSLTPQQK---------------SEVISTLQTS---GHHVAMVGDGINDAPSLALAD----VGIALQIEAQE 782 (883)
Q Consensus 730 -----~v~~~~~p~~K---------------~~~v~~l~~~---g~~v~~vGDg~ND~~al~~Ad----vgIa~~~~~~~ 782 (883)
.+|.++.|.+- .++++.+.+. ....++|||.+.|..||+.+. +.||+ ||.
T Consensus 162 fe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~sa~~VGDSItDv~ml~~~rgrGglAvaF---NGN 238 (315)
T COG4030 162 FEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDFSAVVVGDSITDVKMLEAARGRGGLAVAF---NGN 238 (315)
T ss_pred HHHHHHHHhhcCHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCCcceeEecCcccchHHHHHhhccCceEEEe---cCC
Confidence 23455555443 3333333322 245789999999999999873 66666 667
Q ss_pred HHHHhhcCEEEeCCChhhHHHHHHH
Q 002770 783 NAASTAASIILLGNKLSQVVDALDL 807 (883)
Q Consensus 783 ~~a~~~ad~vl~~~~~~~l~~~i~~ 807 (883)
+-+...||+-+.+++...+..+|++
T Consensus 239 eYal~eAdVAvisp~~~a~~pviel 263 (315)
T COG4030 239 EYALKEADVAVISPTAMAEAPVIEL 263 (315)
T ss_pred cccccccceEEeccchhhhhHHHHH
Confidence 7888999999999999998888876
No 116
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.88 E-value=0.0034 Score=64.31 Aligned_cols=87 Identities=16% Similarity=0.233 Sum_probs=65.8
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEE-e----cCccch--HHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINS-S----LTPQQK--SEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~-~----~~p~~K--~~~v~~l~~~g~~v~~v 757 (883)
++.+++.+++++|+++|+++.++|+-+........+.+|+.. +.+++ . ..|+.. ..+.+.+.-....++||
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~v 171 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFV 171 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEE
Confidence 467999999999999999999999999999999999999842 12322 1 123211 33344444445789999
Q ss_pred cCCccCHHHHHhCCee
Q 002770 758 GDGINDAPSLALADVG 773 (883)
Q Consensus 758 GDg~ND~~al~~Advg 773 (883)
||+.+|+.+-+.+++-
T Consensus 172 gD~~~Di~~A~~~G~~ 187 (198)
T TIGR01428 172 ASNPWDLGGAKKFGFK 187 (198)
T ss_pred eCCHHHHHHHHHCCCc
Confidence 9999999999999974
No 117
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.85 E-value=0.0046 Score=62.13 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=68.9
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcH---------------HHHHHHHHHcCCCCceEEE-e---------------cC
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDRE---------------EAVAATAKEVGIGKEYINS-S---------------LT 736 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~---------------~~a~~ia~~~gi~~~~v~~-~---------------~~ 736 (883)
+.|++.++|++|+++|+++.++|.-+. .....+.++.|+.-+.++. . ..
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~K 106 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLDGIYYCPHHPEGVEEFRQVCDCRK 106 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCccEEEECCCCCcccccccCCCCCCC
Confidence 468999999999999999999997763 2223445555654333332 1 12
Q ss_pred ccc--hHHHHHHHhhcCCeEEEEcCCccCHHHHHhCCee--EEeecCCcc-HHHHhhcCEEEeCCChhhH
Q 002770 737 PQQ--KSEVISTLQTSGHHVAMVGDGINDAPSLALADVG--IALQIEAQE-NAASTAASIILLGNKLSQV 801 (883)
Q Consensus 737 p~~--K~~~v~~l~~~g~~v~~vGDg~ND~~al~~Advg--Ia~~~~~~~-~~a~~~ad~vl~~~~~~~l 801 (883)
|+- =....+.+.-....++||||..+|+.+-+.|++. |.+..+... ......+|+++. ++..|
T Consensus 107 P~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~--~~~el 174 (176)
T TIGR00213 107 PKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLN--SLADL 174 (176)
T ss_pred CCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEec--cHHHh
Confidence 221 1222333333357799999999999999999984 344222221 112234888873 35554
No 118
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.85 E-value=0.0021 Score=70.48 Aligned_cols=90 Identities=11% Similarity=0.019 Sum_probs=69.7
Q ss_pred ecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCce---EEE--------------ecCccchHHHHHH
Q 002770 684 ISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEY---INS--------------SLTPQQKSEVIST 746 (883)
Q Consensus 684 l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~---v~~--------------~~~p~~K~~~v~~ 746 (883)
..+++.+++.+++++|++.|++++++||.+...+..+.+.+|+.... +.+ .-.|+-+...++.
T Consensus 184 ~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~ 263 (300)
T PHA02530 184 KEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWE 263 (300)
T ss_pred ccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHH
Confidence 46789999999999999999999999999999999999998875200 111 1123344555555
Q ss_pred Hhh-cCCeEEEEcCCccCHHHHHhCCee
Q 002770 747 LQT-SGHHVAMVGDGINDAPSLALADVG 773 (883)
Q Consensus 747 l~~-~g~~v~~vGDg~ND~~al~~Advg 773 (883)
+.. ....++||||..+|+.+-+.|++-
T Consensus 264 ~~~~~~~~~~~vgD~~~d~~~a~~~Gi~ 291 (300)
T PHA02530 264 KIAPKYDVLLAVDDRDQVVDMWRRIGLE 291 (300)
T ss_pred HhccCceEEEEEcCcHHHHHHHHHhCCe
Confidence 433 336799999999999999999975
No 119
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=96.80 E-value=0.0054 Score=61.24 Aligned_cols=92 Identities=11% Similarity=0.082 Sum_probs=67.7
Q ss_pred cCCCChhHHHHHHHHHHCCCEEEEEcCC-cHHHHHHHHHHcCCC---------C--ceEEEecCcc-ch--HHHHHHHhh
Q 002770 685 SDSLRHDAEHTVRSLQQKGIKTLLLSGD-REEAVAATAKEVGIG---------K--EYINSSLTPQ-QK--SEVISTLQT 749 (883)
Q Consensus 685 ~D~lr~~~~~~i~~L~~~Gi~v~~lTGd-~~~~a~~ia~~~gi~---------~--~~v~~~~~p~-~K--~~~v~~l~~ 749 (883)
+-++.+++.++++.|+++|+++.++|+. ....+..+.+.+|+. . +.+.+.-.+. .| ..+.+.+.+
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~ 122 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNK 122 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhh
Confidence 3356899999999999999999999976 888999999999985 2 1223222222 22 233444443
Q ss_pred c------CCeEEEEcCCccCHHHHHhCCeeEEe
Q 002770 750 S------GHHVAMVGDGINDAPSLALADVGIAL 776 (883)
Q Consensus 750 ~------g~~v~~vGDg~ND~~al~~AdvgIa~ 776 (883)
. ...++||||...|+.+-+.|++-...
T Consensus 123 ~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~ 155 (174)
T TIGR01685 123 VDPSVLKPAQILFFDDRTDNVREVWGYGVTSCY 155 (174)
T ss_pred cccCCCCHHHeEEEcChhHhHHHHHHhCCEEEE
Confidence 2 36899999999999999999975544
No 120
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.79 E-value=0.0039 Score=67.85 Aligned_cols=113 Identities=17% Similarity=0.144 Sum_probs=72.7
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCC---CCc-eEE-EecCccch------HHHHHHHhhcCCeEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGI---GKE-YIN-SSLTPQQK------SEVISTLQTSGHHVA 755 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi---~~~-~v~-~~~~p~~K------~~~v~~l~~~g~~v~ 755 (883)
++.|++.+.++.|++.|+++.++|+.+......+-+..+. ... .++ +...+..| ..+++.+.-....++
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 223 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRCV 223 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHEE
Confidence 4689999999999999999999999988888877766532 111 122 11111112 334444444457799
Q ss_pred EEcCCccCHHHHHhCCeeEE-eecCCccHHHHhhcCEEEeCCChhhH
Q 002770 756 MVGDGINDAPSLALADVGIA-LQIEAQENAASTAASIILLGNKLSQV 801 (883)
Q Consensus 756 ~vGDg~ND~~al~~AdvgIa-~~~~~~~~~a~~~ad~vl~~~~~~~l 801 (883)
||||+.+|+.+-+.|++... +..+.........+|+++. ++..+
T Consensus 224 ~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~--~~~~l 268 (286)
T PLN02779 224 VVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFD--CLGDV 268 (286)
T ss_pred EEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEEC--Chhhc
Confidence 99999999999999996433 3112111112245788873 34444
No 121
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=96.78 E-value=0.0024 Score=63.25 Aligned_cols=87 Identities=20% Similarity=0.281 Sum_probs=67.6
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC--CceEEEec-----Ccc--chHHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIG--KEYINSSL-----TPQ--QKSEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~--~~~v~~~~-----~p~--~K~~~v~~l~~~g~~v~~v 757 (883)
++.+++.+.++.|++.|++++++|+.+........+++|+. -+.+++.- .|+ -=..+++.+.-....+++|
T Consensus 77 ~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~v 156 (176)
T PF13419_consen 77 QPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFV 156 (176)
T ss_dssp EESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEE
T ss_pred chhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEEE
Confidence 46889999999999999999999999999999999999986 23444321 121 1134444454456789999
Q ss_pred cCCccCHHHHHhCCee
Q 002770 758 GDGINDAPSLALADVG 773 (883)
Q Consensus 758 GDg~ND~~al~~Advg 773 (883)
||..+|+.+-+.||+-
T Consensus 157 gD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 157 GDSPSDVEAAKEAGIK 172 (176)
T ss_dssp ESSHHHHHHHHHTTSE
T ss_pred eCCHHHHHHHHHcCCe
Confidence 9999999999999864
No 122
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.75 E-value=0.0048 Score=61.69 Aligned_cols=108 Identities=18% Similarity=0.239 Sum_probs=74.2
Q ss_pred CCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCc-HHHHHHHHHHcCCCCceEEEecCccch--
Q 002770 664 YSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDR-EEAVAATAKEVGIGKEYINSSLTPQQK-- 740 (883)
Q Consensus 664 ~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~-~~~a~~ia~~~gi~~~~v~~~~~p~~K-- 740 (883)
.+.+.+++..++. +.-. =...+-+++.+++++|++.|++++++|+.+ ...+..+.+.+|+. .+.....|...
T Consensus 23 ~~v~~vv~D~Dgt-l~~~--~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~--~~~~~~KP~p~~~ 97 (170)
T TIGR01668 23 VGIKGVVLDKDNT-LVYP--DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP--VLPHAVKPPGCAF 97 (170)
T ss_pred CCCCEEEEecCCc-cccC--CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE--EEcCCCCCChHHH
Confidence 4556666666654 2200 123578999999999999999999999988 67788888899984 22222344322
Q ss_pred HHHHHHHhhcCCeEEEEcCCc-cCHHHHHhCCe-eEEe
Q 002770 741 SEVISTLQTSGHHVAMVGDGI-NDAPSLALADV-GIAL 776 (883)
Q Consensus 741 ~~~v~~l~~~g~~v~~vGDg~-ND~~al~~Adv-gIa~ 776 (883)
..+.+.+.-....++||||.. .|..+-+.|++ +|.+
T Consensus 98 ~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v 135 (170)
T TIGR01668 98 RRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILV 135 (170)
T ss_pred HHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEE
Confidence 223333333356799999998 79999999997 4444
No 123
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=96.72 E-value=0.014 Score=57.56 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=65.0
Q ss_pred cCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHH---HHHHH-----cCCCCceEEE--------------ecCccc-hH
Q 002770 685 SDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVA---ATAKE-----VGIGKEYINS--------------SLTPQQ-KS 741 (883)
Q Consensus 685 ~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~---~ia~~-----~gi~~~~v~~--------------~~~p~~-K~ 741 (883)
+|.+.+++.+++++++++|++++++||++...+. ...++ .+++...+.. .-.|+. |.
T Consensus 25 ~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~ 104 (157)
T smart00775 25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKI 104 (157)
T ss_pred cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHH
Confidence 4788999999999999999999999999999884 55555 2343222221 112333 77
Q ss_pred HHHHHHhh-----cCCeEEEEcCCccCHHHHHhCCee
Q 002770 742 EVISTLQT-----SGHHVAMVGDGINDAPSLALADVG 773 (883)
Q Consensus 742 ~~v~~l~~-----~g~~v~~vGDg~ND~~al~~Advg 773 (883)
+.++.+++ ....++.+||+.+|+.+-+++++-
T Consensus 105 ~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 105 ACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 78887776 235667799999999999887653
No 124
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=96.69 E-value=0.011 Score=73.01 Aligned_cols=133 Identities=14% Similarity=0.191 Sum_probs=90.0
Q ss_pred CCeEEEEEecCceEEEEEEe--cCCCChhHHHHHHHHHH-CCCEEEEEcCCcHHHHHHHHHHcCCC--------------
Q 002770 665 SKSVVYVGREGEGIIGAIAI--SDSLRHDAEHTVRSLQQ-KGIKTLLLSGDREEAVAATAKEVGIG-------------- 727 (883)
Q Consensus 665 g~~~~~~a~~~~~~lG~i~l--~D~lr~~~~~~i~~L~~-~Gi~v~~lTGd~~~~a~~ia~~~gi~-------------- 727 (883)
..+++++-+||. ++....- ...+.+++.+++++|.+ .|+.++++||+...........+++.
T Consensus 491 ~~rLi~~D~DGT-L~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l~liaenG~~i~~~~~ 569 (726)
T PRK14501 491 SRRLLLLDYDGT-LVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPIHLVAEHGAWSRAPGG 569 (726)
T ss_pred cceEEEEecCcc-ccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCeEEEEeCCEEEeCCCC
Confidence 357788888886 5542111 12367899999999999 59999999999999888776655540
Q ss_pred ------C-c--------------------------------------------------------------e-----EEE
Q 002770 728 ------K-E--------------------------------------------------------------Y-----INS 733 (883)
Q Consensus 728 ------~-~--------------------------------------------------------------~-----v~~ 733 (883)
. + . .+.
T Consensus 570 ~w~~~~~~~~~w~~~v~~il~~~~~~~~gs~ie~k~~~l~~~~r~~d~~~~~~~a~~l~~~l~~~~~~~~~~v~~g~~~v 649 (726)
T PRK14501 570 EWQLLEPVATEWKDAVRPILEEFVDRTPGSFIEEKEASLAWHYRNADPELGEARANELILALSSLLSNAPLEVLRGNKVV 649 (726)
T ss_pred ceEECCCcchhHHHHHHHHHHHHHhcCCCcEEEEcceEEEEEccCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEECCeEE
Confidence 0 0 0 000
Q ss_pred ecCcc--chHHHHHHHhhc--CCeEEEEcCCccCHHHHHhC---CeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHHH
Q 002770 734 SLTPQ--QKSEVISTLQTS--GHHVAMVGDGINDAPSLALA---DVGIALQIEAQENAASTAASIILLGNKLSQVVDALD 806 (883)
Q Consensus 734 ~~~p~--~K~~~v~~l~~~--g~~v~~vGDg~ND~~al~~A---dvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i~ 806 (883)
++.|. +|...++.+.+. ...++++||+.||.+|++.+ +.+|+| +++ +.+|++++.+ -+.+..+++
T Consensus 650 eV~p~~vnKG~al~~ll~~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~v--G~~----~s~A~~~l~~--~~eV~~~L~ 721 (726)
T PRK14501 650 EVRPAGVNKGRAVRRLLEAGPYDFVLAIGDDTTDEDMFRALPETAITVKV--GPG----ESRARYRLPS--QREVRELLR 721 (726)
T ss_pred EEEECCCCHHHHHHHHHhcCCCCEEEEECCCCChHHHHHhcccCceEEEE--CCC----CCcceEeCCC--HHHHHHHHH
Confidence 12222 466666666553 25899999999999999986 588888 553 4678888865 355555543
No 125
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=96.68 E-value=0.0039 Score=65.33 Aligned_cols=90 Identities=13% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEE-EecCccch--HHH----HHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYIN-SSLTPQQK--SEV----ISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~-~~~~p~~K--~~~----v~~l~~~g~~v~~v 757 (883)
.+.+++.+.++.|+++|+++.++|+.+...+....+..|+.. +.++ +.-....| .++ .+.+.-....++||
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~i 172 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLFI 172 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEEE
Confidence 567899999999999999999999998888888888888842 1232 22111122 223 33333345679999
Q ss_pred cCCccCHHHHHhCCee--EEe
Q 002770 758 GDGINDAPSLALADVG--IAL 776 (883)
Q Consensus 758 GDg~ND~~al~~Advg--Ia~ 776 (883)
||..+|+.+-+.|++. +++
T Consensus 173 gDs~~di~aA~~aG~~~~~~v 193 (224)
T PRK14988 173 DDSEPILDAAAQFGIRYCLGV 193 (224)
T ss_pred cCCHHHHHHHHHcCCeEEEEE
Confidence 9999999999999985 445
No 126
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=96.67 E-value=0.0065 Score=58.68 Aligned_cols=106 Identities=19% Similarity=0.287 Sum_probs=82.2
Q ss_pred CCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccch-
Q 002770 662 SNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQK- 740 (883)
Q Consensus 662 ~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K- 740 (883)
...|.+.+.+-.|+. ++..= ..+..|++++-+++++.+|++++++|..++..+...++.+|++ .++-...|-.+
T Consensus 24 ~~~Gikgvi~DlDNT-Lv~wd--~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~--fi~~A~KP~~~~ 98 (175)
T COG2179 24 KAHGIKGVILDLDNT-LVPWD--NPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP--FIYRAKKPFGRA 98 (175)
T ss_pred HHcCCcEEEEeccCc-eeccc--CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc--eeecccCccHHH
Confidence 456777788777776 44321 3456899999999999999999999999999999999999997 77776777765
Q ss_pred -HHHHHHHhhcCCeEEEEcCC-ccCHHHHHhCCe
Q 002770 741 -SEVISTLQTSGHHVAMVGDG-INDAPSLALADV 772 (883)
Q Consensus 741 -~~~v~~l~~~g~~v~~vGDg-~ND~~al~~Adv 772 (883)
.+.++.++-..+.|+||||. ..|+-+=..+++
T Consensus 99 fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~ 132 (175)
T COG2179 99 FRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGM 132 (175)
T ss_pred HHHHHHHcCCChhHEEEEcchhhhhhhcccccCc
Confidence 23444444456789999997 578877777765
No 127
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.66 E-value=0.0059 Score=63.60 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=76.7
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEEe-c----Cccch--HHHHHHH-hhcCCeEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINSS-L----TPQQK--SEVISTL-QTSGHHVAM 756 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~~-~----~p~~K--~~~v~~l-~~~g~~v~~ 756 (883)
++.+++.+.+++|++. ++++++|+-....+..+.+.+|+.. +.+++. . .|+.. ...++.+ .-....++|
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~ 175 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLM 175 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEE
Confidence 4678999999999999 9999999999999999999999842 233332 1 23221 3334444 333467999
Q ss_pred EcCCc-cCHHHHHhCCe-eEEeecCCccHHHHhhcCEEEeCCChhhHHHH
Q 002770 757 VGDGI-NDAPSLALADV-GIALQIEAQENAASTAASIILLGNKLSQVVDA 804 (883)
Q Consensus 757 vGDg~-ND~~al~~Adv-gIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~ 804 (883)
|||.. +|+.+-+.+++ +|.+..+..+......++.++ +++..+..+
T Consensus 176 igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~--~~~~el~~~ 223 (224)
T TIGR02254 176 IGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEI--RSLEELYEI 223 (224)
T ss_pred ECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEE--CCHHHHHhh
Confidence 99998 89999999996 444421222212223466665 446666543
No 128
>PRK09449 dUMP phosphatase; Provisional
Probab=96.61 E-value=0.0086 Score=62.55 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=74.9
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceE-EEec----Cccch--HHHHHHHhhc-CCeEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYI-NSSL----TPQQK--SEVISTLQTS-GHHVAM 756 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v-~~~~----~p~~K--~~~v~~l~~~-g~~v~~ 756 (883)
++.|++.++++.|+ .|+++.++|+.....+....+.+|+.. +.+ .+.- .|+.. ..+++.+.-. ...++|
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~ 173 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLM 173 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 36789999999999 689999999998888888888999842 123 2322 22211 2233333322 257999
Q ss_pred EcCCc-cCHHHHHhCCee-EEeecCCccHHHHhhcCEEEeCCChhhHHHHH
Q 002770 757 VGDGI-NDAPSLALADVG-IALQIEAQENAASTAASIILLGNKLSQVVDAL 805 (883)
Q Consensus 757 vGDg~-ND~~al~~Advg-Ia~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i 805 (883)
|||.. +|+.+-+.|++- |.+..+...+.....+|+++ +++..+..++
T Consensus 174 vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i--~~~~el~~~l 222 (224)
T PRK09449 174 VGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQV--SSLSELEQLL 222 (224)
T ss_pred EcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEE--CCHHHHHHHH
Confidence 99998 799999999984 44421111111112467776 4477766554
No 129
>PLN02940 riboflavin kinase
Probab=96.52 E-value=0.0066 Score=68.84 Aligned_cols=107 Identities=15% Similarity=0.172 Sum_probs=71.7
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHH-HcCCCC--ceEEEe-----cCcc--chHHHHHHHhhcCCeEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAK-EVGIGK--EYINSS-----LTPQ--QKSEVISTLQTSGHHVAM 756 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~-~~gi~~--~~v~~~-----~~p~--~K~~~v~~l~~~g~~v~~ 756 (883)
++.+++.+.+++|++.|+++.++|+.....+....+ ..|+.. +.+.+. ..|+ -=..+++.+.-..+.++|
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~ 172 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLV 172 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 357999999999999999999999999888887765 677742 123221 1221 113344444444578999
Q ss_pred EcCCccCHHHHHhCCee-EEeecCCccHHHHhhcCEEE
Q 002770 757 VGDGINDAPSLALADVG-IALQIEAQENAASTAASIIL 793 (883)
Q Consensus 757 vGDg~ND~~al~~Advg-Ia~~~~~~~~~a~~~ad~vl 793 (883)
|||..+|+.+-+.|++. |++..+.........+|.++
T Consensus 173 VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i 210 (382)
T PLN02940 173 IEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVI 210 (382)
T ss_pred EeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEe
Confidence 99999999999999974 44421222222334566665
No 130
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.50 E-value=0.0054 Score=59.70 Aligned_cols=87 Identities=17% Similarity=0.286 Sum_probs=61.0
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcH---------------HHHHHHHHHcCCCCce-EEEec---------Cccch-
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDRE---------------EAVAATAKEVGIGKEY-INSSL---------TPQQK- 740 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~---------------~~a~~ia~~~gi~~~~-v~~~~---------~p~~K- 740 (883)
++.+++.++++.|++.|+++.++|+.+. ..+..+.+.+|+.... ++... .|+-+
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~ 106 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGL 106 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 3688999999999999999999998762 4566777888985222 22211 22211
Q ss_pred -HHHHHHHhhcCCeEEEEcCCccCHHHHHhCCee
Q 002770 741 -SEVISTLQTSGHHVAMVGDGINDAPSLALADVG 773 (883)
Q Consensus 741 -~~~v~~l~~~g~~v~~vGDg~ND~~al~~Advg 773 (883)
..+++.+.-..+.++||||...|+.+-+.+++-
T Consensus 107 ~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~ 140 (147)
T TIGR01656 107 ILEALKRLGVDASRSLVVGDRLRDLQAARNAGLA 140 (147)
T ss_pred HHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCC
Confidence 223333333346799999999999999999874
No 131
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.47 E-value=0.004 Score=62.80 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=59.0
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--eEEE-e----cCccch--HHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE--YINS-S----LTPQQK--SEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~--~v~~-~----~~p~~K--~~~v~~l~~~g~~v~~v 757 (883)
++.|++.++++.|+++|+++.++|+... +....+.+|+... .+.. . -.|+-. ....+.+.-....++||
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~v 164 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGI 164 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence 5679999999999999999999997533 4567888898521 2221 1 122211 22333333334679999
Q ss_pred cCCccCHHHHHhCCee
Q 002770 758 GDGINDAPSLALADVG 773 (883)
Q Consensus 758 GDg~ND~~al~~Advg 773 (883)
||..+|+.+-+.|++-
T Consensus 165 gD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 165 EDAQAGIEAIKAAGMF 180 (185)
T ss_pred ecCHHHHHHHHHcCCE
Confidence 9999999999999973
No 132
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.018 Score=66.07 Aligned_cols=152 Identities=17% Similarity=0.256 Sum_probs=117.6
Q ss_pred cCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC-------------------------
Q 002770 674 EGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK------------------------- 728 (883)
Q Consensus 674 ~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~------------------------- 728 (883)
.|..+.|++.+.-+.+++....|+.|-++-|+.+..|-.++...+-.|+++||..
T Consensus 813 sGQIf~GlVs~~Yea~ldiVriIdgL~naCiRfVYFS~EdELkSkVFAEKlGiEaGWNCHISLa~~~d~Pg~e~~pa~~q 892 (1354)
T KOG4383|consen 813 SGQIFCGLVSLHYEAILDIVRIIDGLDNACIRFVYFSKEDELKSKVFAEKLGIEAGWNCHISLAEEEDAPGREAGPAHEQ 892 (1354)
T ss_pred ccchhhhhhhhhccchhhHHHHHHHhhhhheeeeeecchHHHHHHHHHHHhccccccceeEEeccCCCCCcccCCCCChh
Confidence 3556899999999999999999999999999999999999999999999999810
Q ss_pred ----------------------------------------------------------------------------ceEE
Q 002770 729 ----------------------------------------------------------------------------EYIN 732 (883)
Q Consensus 729 ----------------------------------------------------------------------------~~v~ 732 (883)
.-.|
T Consensus 893 ~a~qkpSlhddlnqia~ddaeg~lL~~Eeg~~dliSfq~~dsdi~kf~ed~N~AkLPrGihnVRPHL~~iDNVPLLV~LF 972 (1354)
T KOG4383|consen 893 FAAQKPSLHDDLNQIALDDAEGELLDCEEGARDLISFQKMDSDIAKFAEDPNIAKLPRGIHNVRPHLDEIDNVPLLVGLF 972 (1354)
T ss_pred hhccCcchhHHHHHhhhcccccceeehhhcccCCccccccccchhhhcCCCchhhcCcchhhcCcccccccCcceeeeec
Confidence 0246
Q ss_pred EecCccchHHHHHHHhhcCCeEEEEcCCccCHH--HHHhCCeeEEeecCC-------------ccHH-HHhhcC------
Q 002770 733 SSLTPQQKSEVISTLQTSGHHVAMVGDGINDAP--SLALADVGIALQIEA-------------QENA-ASTAAS------ 790 (883)
Q Consensus 733 ~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~--al~~AdvgIa~~~~~-------------~~~~-a~~~ad------ 790 (883)
..++|+.--+.|+.+|+.|+.++.+|...|-.. .+-+||++|++ .. ++.. ..++.|
T Consensus 973 TDcnpeamcEMIeIMQE~GEVtcclGS~aN~rNSciflkadISial--D~l~~~~C~~e~fg~assismaqandglsplQ 1050 (1354)
T KOG4383|consen 973 TDCNPEAMCEMIEIMQENGEVTCCLGSCANARNSCIFLKADISIAL--DDLEEPACRLEDFGVASSISMAQANDGLSPLQ 1050 (1354)
T ss_pred cCCCHHHHHHHHHHHHHcCcEEEEeccccccccceEEEccceeEEe--ccCCCccceecccccchhhhhhhhcCCCCcee
Confidence 678899999999999999999999999888644 34689999998 42 1111 111222
Q ss_pred -----------EEEeCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 791 -----------IILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNV 827 (883)
Q Consensus 791 -----------~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~ 827 (883)
+-+....+-.+..+|+-+|..+.-+|+.+.|.+-..+
T Consensus 1051 iSgqLnaL~c~~~f~~ee~ikiirLIe~ARHa~~g~R~cfLFiLq~qL 1098 (1354)
T KOG4383|consen 1051 ISGQLNALACDFRFDHEELIKIIRLIECARHAMSGFRHCFLFILQAQL 1098 (1354)
T ss_pred ecccccccccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2222223445778888999999999999988765443
No 133
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.39 E-value=0.0056 Score=61.71 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=61.3
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEEe-----cCccch--HHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINSS-----LTPQQK--SEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~~-----~~p~~K--~~~v~~l~~~g~~v~~v 757 (883)
++.|++.++++.|++.|+++.++|+. ..+..+.+.+|+.. +.+++. ..|... ..+.+.+.-..+.++||
T Consensus 88 ~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~I 165 (185)
T TIGR02009 88 EVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECVVF 165 (185)
T ss_pred CCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence 57899999999999999999999987 56788888889842 233321 123211 22233333334679999
Q ss_pred cCCccCHHHHHhCCee
Q 002770 758 GDGINDAPSLALADVG 773 (883)
Q Consensus 758 GDg~ND~~al~~Advg 773 (883)
||..+|+.+-+.|++.
T Consensus 166 gD~~~di~aA~~~G~~ 181 (185)
T TIGR02009 166 EDALAGVQAARAAGMF 181 (185)
T ss_pred eCcHhhHHHHHHCCCe
Confidence 9999999999999874
No 134
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.0086 Score=50.72 Aligned_cols=56 Identities=29% Similarity=0.425 Sum_probs=48.0
Q ss_pred EEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcC
Q 002770 76 LDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECG 143 (883)
Q Consensus 76 l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G 143 (883)
..--.|+|.+|...|++.++..+||.++.++...+++++.-+- ++..+.+.+.+.|
T Consensus 8 v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~------------~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 8 VLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNV------------DPVKLLKKLKKTG 63 (73)
T ss_pred EEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEec------------CHHHHHHHHHhcC
Confidence 3445799999999999999999999999999999999997652 5678888888766
No 135
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.38 E-value=0.0093 Score=59.87 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=61.4
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEE-EecCccch------HHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYIN-SSLTPQQK------SEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~-~~~~p~~K------~~~v~~l~~~g~~v~~v 757 (883)
++.|++.+.++.|++.|+++.++|+..... ..+..++|+.. +.++ +.-....| ..+.+.+.-....++||
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 163 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFV 163 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEE
Confidence 468899999999999999999999988877 66666688842 1232 22111222 33334443345789999
Q ss_pred cCCccCHHHHHhCCe
Q 002770 758 GDGINDAPSLALADV 772 (883)
Q Consensus 758 GDg~ND~~al~~Adv 772 (883)
||...|+.+-+.+++
T Consensus 164 gD~~~di~aA~~~G~ 178 (183)
T TIGR01509 164 DDSPAGIEAAKAAGM 178 (183)
T ss_pred cCCHHHHHHHHHcCC
Confidence 999999999999987
No 136
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=96.23 E-value=0.018 Score=60.12 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=32.4
Q ss_pred chHHHHHHHhhc----CCeEEEEcCCccCHHHHHhCCeeEEe
Q 002770 739 QKSEVISTLQTS----GHHVAMVGDGINDAPSLALADVGIAL 776 (883)
Q Consensus 739 ~K~~~v~~l~~~----g~~v~~vGDg~ND~~al~~AdvgIa~ 776 (883)
.|...++.+.+. .+.|+++||+.||.+||+.|+.|||+
T Consensus 179 ~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 179 SKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred CHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence 587777776543 46799999999999999999999997
No 137
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=96.18 E-value=0.05 Score=57.90 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=43.6
Q ss_pred chHHHHHHHhhc----CCeEEEEcCCccCHHHHHhCCeeEEeecCCccHH-----HHhhc---C-EEEeCCChhhHHHHH
Q 002770 739 QKSEVISTLQTS----GHHVAMVGDGINDAPSLALADVGIALQIEAQENA-----ASTAA---S-IILLGNKLSQVVDAL 805 (883)
Q Consensus 739 ~K~~~v~~l~~~----g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~-----a~~~a---d-~vl~~~~~~~l~~~i 805 (883)
.|...++.|+++ .+.|+.+||+.||.+||..++-||.+ +|+.+. ..... . ++-..+.-.+|.+.+
T Consensus 165 ~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL~~~~~~vvV--~Na~~e~~~~~~~~~~~~~~iy~a~~~~a~GIlegl 242 (247)
T PF05116_consen 165 SKGAALRYLMERWGIPPEQVLVAGDSGNDLEMLEGGDHGVVV--GNAQPELLSWLLEKLRQQERIYFAQGPYAAGILEGL 242 (247)
T ss_dssp SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHHCCSSEEEE---TTS-HHHHHHHHHCC-TTE--EE-SS-THHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHHcCcCCEEEE--cCCCHHHHHHHHHhcccCCceEecCCCCcHHHHHHH
Confidence 588888887765 24788899999999999999999999 777766 22222 2 333345566666655
Q ss_pred H
Q 002770 806 D 806 (883)
Q Consensus 806 ~ 806 (883)
+
T Consensus 243 ~ 243 (247)
T PF05116_consen 243 Q 243 (247)
T ss_dssp H
T ss_pred H
Confidence 4
No 138
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.17 E-value=0.028 Score=59.73 Aligned_cols=61 Identities=23% Similarity=0.307 Sum_probs=42.7
Q ss_pred chHHHHHHHhhc----CCeEEEEcCCccCHHHHHhC--------CeeEEeecCCccHHHHhhcCEEEeCCChhhHHHHH
Q 002770 739 QKSEVISTLQTS----GHHVAMVGDGINDAPSLALA--------DVGIALQIEAQENAASTAASIILLGNKLSQVVDAL 805 (883)
Q Consensus 739 ~K~~~v~~l~~~----g~~v~~vGDg~ND~~al~~A--------dvgIa~~~~~~~~~a~~~ad~vl~~~~~~~l~~~i 805 (883)
+|...++.+.+. ...++|+||+.||.+|++.+ ..+|++ ..+ ..+..|++++. +...+...+
T Consensus 167 ~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v--~~g--~~~~~A~~~~~--~~~~v~~~L 239 (244)
T TIGR00685 167 NKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPI--GSG--SKKTVAKFHLT--GPQQVLEFL 239 (244)
T ss_pred CHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEE--ecC--CcCCCceEeCC--CHHHHHHHH
Confidence 455555555443 34799999999999999988 478888 333 24567888874 466666555
No 139
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.13 E-value=0.019 Score=56.03 Aligned_cols=81 Identities=23% Similarity=0.302 Sum_probs=56.8
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEEecC--ccchHHHH----HHHhhcCCeEEEEcCC
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINSSLT--PQQKSEVI----STLQTSGHHVAMVGDG 760 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~~~~--p~~K~~~v----~~l~~~g~~v~~vGDg 760 (883)
.+++.+.++.|++.|+++.++|+.....+....+.. +.. +.+++.-. ++.+.+.+ +.+.-.. .++||||.
T Consensus 66 ~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~iGDs 143 (154)
T TIGR01549 66 IRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVLHVGDN 143 (154)
T ss_pred ccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEEEeCC
Confidence 478999999999999999999999999988888874 321 12332211 11122333 3333334 79999999
Q ss_pred ccCHHHHHhCC
Q 002770 761 INDAPSLALAD 771 (883)
Q Consensus 761 ~ND~~al~~Ad 771 (883)
.+|..+-+.|+
T Consensus 144 ~~Di~aa~~aG 154 (154)
T TIGR01549 144 LNDIEGARNAG 154 (154)
T ss_pred HHHHHHHHHcc
Confidence 99999988774
No 140
>PLN02811 hydrolase
Probab=96.10 E-value=0.02 Score=59.74 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=57.7
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHH-HHHHcCCCC--ceEEEec-------Cccc--hHHHHHHHh---hcC
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAA-TAKEVGIGK--EYINSSL-------TPQQ--KSEVISTLQ---TSG 751 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~-ia~~~gi~~--~~v~~~~-------~p~~--K~~~v~~l~---~~g 751 (883)
++.|++.+.|+.|++.|+++.++||-....... ..+..++.. +.+++.- .|+. =...++.+. -..
T Consensus 78 ~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 157 (220)
T PLN02811 78 DLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDP 157 (220)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCc
Confidence 467999999999999999999999987654432 332234421 1222221 1211 133444443 234
Q ss_pred CeEEEEcCCccCHHHHHhCCee
Q 002770 752 HHVAMVGDGINDAPSLALADVG 773 (883)
Q Consensus 752 ~~v~~vGDg~ND~~al~~Advg 773 (883)
+.++||||...|+.+-+.|++-
T Consensus 158 ~~~v~IgDs~~di~aA~~aG~~ 179 (220)
T PLN02811 158 GKVLVFEDAPSGVEAAKNAGMS 179 (220)
T ss_pred cceEEEeccHhhHHHHHHCCCe
Confidence 6799999999999999999973
No 141
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.08 E-value=0.014 Score=57.72 Aligned_cols=88 Identities=10% Similarity=0.114 Sum_probs=61.3
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCC---------------cHHHHHHHHHHcCCCCceE-EE-----ecCc--cchHHH
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGD---------------REEAVAATAKEVGIGKEYI-NS-----SLTP--QQKSEV 743 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd---------------~~~~a~~ia~~~gi~~~~v-~~-----~~~p--~~K~~~ 743 (883)
++-+++.+++++|+++|++++++|.. ....+..+.+.+|+.-+.+ ++ .-.. .-|..+
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~~ 108 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKL 108 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 35688999999999999999999975 3456778888889862223 22 1111 112333
Q ss_pred HHHHhh----cCCeEEEEcCCccCHHHHHhCCeeE
Q 002770 744 ISTLQT----SGHHVAMVGDGINDAPSLALADVGI 774 (883)
Q Consensus 744 v~~l~~----~g~~v~~vGDg~ND~~al~~AdvgI 774 (883)
+..+.+ ....+.||||+.+|..+.+.+++-.
T Consensus 109 ~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~ 143 (161)
T TIGR01261 109 LEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRG 143 (161)
T ss_pred HHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeE
Confidence 333322 2357999999999999999999743
No 142
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.03 E-value=0.032 Score=59.58 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=62.0
Q ss_pred CCCChhHHHHHHHHHHCCCEEEEEcCCcHHH---HHHHHHHcCCCC---ceEEEecCccchHHHHHHHhhcCCeEEEEcC
Q 002770 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEA---VAATAKEVGIGK---EYINSSLTPQQKSEVISTLQTSGHHVAMVGD 759 (883)
Q Consensus 686 D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~---a~~ia~~~gi~~---~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGD 759 (883)
.++-|++.+.++.|++.|+++.++|++.... +....+..|++. +.++.+-....|....+.+.+....+++|||
T Consensus 117 a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~Ivl~vGD 196 (266)
T TIGR01533 117 AKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEIVLLFGD 196 (266)
T ss_pred CCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCEEEEECC
Confidence 3457899999999999999999999987443 446667789853 3555553334576666667665567999999
Q ss_pred CccCHHHHH
Q 002770 760 GINDAPSLA 768 (883)
Q Consensus 760 g~ND~~al~ 768 (883)
-.+|.....
T Consensus 197 ~~~Df~~~~ 205 (266)
T TIGR01533 197 NLLDFDDFF 205 (266)
T ss_pred CHHHhhhhh
Confidence 999986543
No 143
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=95.93 E-value=0.034 Score=58.15 Aligned_cols=88 Identities=22% Similarity=0.320 Sum_probs=66.5
Q ss_pred CCChhHHHHHHHH--HHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--eEEEe----------------------cCc-cc
Q 002770 687 SLRHDAEHTVRSL--QQKGIKTLLLSGDREEAVAATAKEVGIGKE--YINSS----------------------LTP-QQ 739 (883)
Q Consensus 687 ~lr~~~~~~i~~L--~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~--~v~~~----------------------~~p-~~ 739 (883)
|+.|+.++.++.+ ++.|+.++++|.-+..-...+.+.-|+... .++++ +.| --
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~NmC 150 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNMC 150 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCccc
Confidence 5678889999999 568999999999999999999999999532 22221 222 25
Q ss_pred hHHHHHHHhhc----C---CeEEEEcCCccCHHHH---HhCCeeE
Q 002770 740 KSEVISTLQTS----G---HHVAMVGDGINDAPSL---ALADVGI 774 (883)
Q Consensus 740 K~~~v~~l~~~----g---~~v~~vGDg~ND~~al---~~AdvgI 774 (883)
|..+++.+++. | .+|++||||.||.... +.+|+-.
T Consensus 151 K~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~ 195 (234)
T PF06888_consen 151 KGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVF 195 (234)
T ss_pred hHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEe
Confidence 99999988775 4 6899999999996543 2455443
No 144
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=95.92 E-value=0.0098 Score=57.97 Aligned_cols=91 Identities=9% Similarity=-0.026 Sum_probs=65.9
Q ss_pred cCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC---ceEEEe-cCccchHHHHHHH---hhcCCeEEEE
Q 002770 685 SDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK---EYINSS-LTPQQKSEVISTL---QTSGHHVAMV 757 (883)
Q Consensus 685 ~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~---~~v~~~-~~p~~K~~~v~~l---~~~g~~v~~v 757 (883)
.-.++|++.+.++.|+ .++++.++|.-+...+..+.+.+|+.. +.+.++ -....|-.+.+.+ ....+.++||
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i 121 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIII 121 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEE
Confidence 3356999999999998 579999999999999999999999853 122222 1111232244433 3445789999
Q ss_pred cCCccCHHHHHhCCeeEEe
Q 002770 758 GDGINDAPSLALADVGIAL 776 (883)
Q Consensus 758 GDg~ND~~al~~AdvgIa~ 776 (883)
||..+|..+-+.+++-|..
T Consensus 122 ~Ds~~~~~aa~~ngI~i~~ 140 (148)
T smart00577 122 DDSPDSWPFHPENLIPIKP 140 (148)
T ss_pred ECCHHHhhcCccCEEEecC
Confidence 9999999987777666543
No 145
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=95.88 E-value=0.025 Score=62.88 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=62.1
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCC---------------cHHHHHHHHHHcCCCCceEEEec--------CccchHHH
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGD---------------REEAVAATAKEVGIGKEYINSSL--------TPQQKSEV 743 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd---------------~~~~a~~ia~~~gi~~~~v~~~~--------~p~~K~~~ 743 (883)
++.|++.+.+++|+++|++++++|+- ....+..+.+..|+.-+.++... ...-|..+
T Consensus 30 ~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~i~~~~~sd~~~~rKP~p~~ 109 (354)
T PRK05446 30 AFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDEVLICPHFPEDNCSCRKPKTGL 109 (354)
T ss_pred eECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceeeEEEeCCcCcccCCCCCCCHHH
Confidence 56899999999999999999999983 24456678888888522332211 11223444
Q ss_pred HHHHhhc----CCeEEEEcCCccCHHHHHhCCee
Q 002770 744 ISTLQTS----GHHVAMVGDGINDAPSLALADVG 773 (883)
Q Consensus 744 v~~l~~~----g~~v~~vGDg~ND~~al~~Advg 773 (883)
+..+.++ ...+.||||+.+|..+-+.|++-
T Consensus 110 l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~ 143 (354)
T PRK05446 110 VEEYLAEGAIDLANSYVIGDRETDVQLAENMGIK 143 (354)
T ss_pred HHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCe
Confidence 5444332 37899999999999999999974
No 146
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=95.88 E-value=0.047 Score=56.76 Aligned_cols=80 Identities=24% Similarity=0.224 Sum_probs=59.0
Q ss_pred CCCChhHHHHHHHHHHCCCEEEEEcCCcHHH---HHHHHHHcCCCC-ceEEEec-Cccc------hHHHHHHHhhcCC-e
Q 002770 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEA---VAATAKEVGIGK-EYINSSL-TPQQ------KSEVISTLQTSGH-H 753 (883)
Q Consensus 686 D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~---a~~ia~~~gi~~-~~v~~~~-~p~~------K~~~v~~l~~~g~-~ 753 (883)
-+.-|++.+.++.|++.|++|+++||+.... ...-.++.|++. +.++-+- .... |.+.-+.+.++|+ .
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrI 198 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRI 198 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCceE
Confidence 3667899999999999999999999999766 444456678873 4455443 1122 6666667777776 5
Q ss_pred EEEEcCCccCHH
Q 002770 754 VAMVGDGINDAP 765 (883)
Q Consensus 754 v~~vGDg~ND~~ 765 (883)
++.+||..+|..
T Consensus 199 v~~iGDq~sDl~ 210 (229)
T TIGR01675 199 WGNIGDQWSDLL 210 (229)
T ss_pred EEEECCChHHhc
Confidence 678999999873
No 147
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.87 E-value=0.065 Score=56.81 Aligned_cols=93 Identities=15% Similarity=0.191 Sum_probs=63.2
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHH--HHHHHcCCCCceEEEecCccc-hHHHHHHH-hh---cCC
Q 002770 680 GAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVA--ATAKEVGIGKEYINSSLTPQQ-KSEVISTL-QT---SGH 752 (883)
Q Consensus 680 G~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~--~ia~~~gi~~~~v~~~~~p~~-K~~~v~~l-~~---~g~ 752 (883)
|.+.-.+.+-|++.+++++|+++|+++.++|........ ...+++|+..+.+..-+++.+ -...+... ++ .+.
T Consensus 17 G~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~~~l~~~~~~~~~~~~ 96 (242)
T TIGR01459 17 GVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAVQMILESKKRFDIRNG 96 (242)
T ss_pred cccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHHHHHHhhhhhccCCCc
Confidence 445566788999999999999999999999986655444 567889997411111122332 12233322 22 246
Q ss_pred eEEEEcCCccCHHHHHhCCe
Q 002770 753 HVAMVGDGINDAPSLALADV 772 (883)
Q Consensus 753 ~v~~vGDg~ND~~al~~Adv 772 (883)
.+.++||+.+|...+...+.
T Consensus 97 ~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 97 IIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred eEEEeCCcccchhhhcCCCc
Confidence 79999999999998865543
No 148
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.82 E-value=0.019 Score=58.98 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=59.9
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEE-ec----Cccc--hHHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINS-SL----TPQQ--KSEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~-~~----~p~~--K~~~v~~l~~~g~~v~~v 757 (883)
.+-|++.++++.|++.|+++.++|+-... .....+.+|+.. +.++. .- .|+. =..+++.+.-....++||
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHI 183 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEE
Confidence 46789999999999999999999976654 467778888842 12322 11 2221 122333333345789999
Q ss_pred cCCc-cCHHHHHhCCee
Q 002770 758 GDGI-NDAPSLALADVG 773 (883)
Q Consensus 758 GDg~-ND~~al~~Advg 773 (883)
||+. +|+.+-+.|++-
T Consensus 184 gD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 184 GDSLRNDYQGARAAGWR 200 (203)
T ss_pred CCCchHHHHHHHHcCCe
Confidence 9997 899999988863
No 149
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.70 E-value=0.041 Score=60.96 Aligned_cols=90 Identities=13% Similarity=0.214 Sum_probs=71.1
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHH----cCCCCceEEEecCccchHHHHHHHhh----cCCeEEEEc
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKE----VGIGKEYINSSLTPQQKSEVISTLQT----SGHHVAMVG 758 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~----~gi~~~~v~~~~~p~~K~~~v~~l~~----~g~~v~~vG 758 (883)
++.+++.++++.|++.|+++.++|..+...+..+.+. +|+.+........++.|...++.+.+ ....++|||
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfid 110 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSINWGPKSESLRKIAKKLNLGTDSFLFID 110 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEecCchHHHHHHHHHHhCCCcCcEEEEC
Confidence 3578999999999999999999999999999999999 88864333333444556555554433 347899999
Q ss_pred CCccCHHHHHhCCeeEEe
Q 002770 759 DGINDAPSLALADVGIAL 776 (883)
Q Consensus 759 Dg~ND~~al~~AdvgIa~ 776 (883)
|...|..+.+.+...+.+
T Consensus 111 D~~~d~~~~~~~lp~~~~ 128 (320)
T TIGR01686 111 DNPAERANVKITLPVKTL 128 (320)
T ss_pred CCHHHHHHHHHHCCCCcc
Confidence 999999999998887655
No 150
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=95.58 E-value=0.039 Score=54.83 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=58.8
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcHH------------HHHHHHHHcCCCCceEEEec-----Cccch--HHHHHHHh
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDREE------------AVAATAKEVGIGKEYINSSL-----TPQQK--SEVISTLQ 748 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~~------------~a~~ia~~~gi~~~~v~~~~-----~p~~K--~~~v~~l~ 748 (883)
+-+++.+++++|+++|+++.++|..+.. .+..+.+.+|+....+.+.- .|+.. ..+++.+.
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~ 122 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYN 122 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHcC
Confidence 3489999999999999999999976542 45678899998642222211 12111 22233332
Q ss_pred --hcCCeEEEEcCCc--------cCHHHHHhCCeeE
Q 002770 749 --TSGHHVAMVGDGI--------NDAPSLALADVGI 774 (883)
Q Consensus 749 --~~g~~v~~vGDg~--------ND~~al~~AdvgI 774 (883)
-....++||||.. +|..+-+.|++-.
T Consensus 123 ~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 123 SPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred CCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCc
Confidence 2236799999986 6999999888643
No 151
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=95.36 E-value=0.044 Score=51.93 Aligned_cols=83 Identities=12% Similarity=0.150 Sum_probs=58.6
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCC-cHHHHHHHHHHcC-------CCC---ceEEEecCccch--HHHHHHHh--hcC
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGD-REEAVAATAKEVG-------IGK---EYINSSLTPQQK--SEVISTLQ--TSG 751 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd-~~~~a~~ia~~~g-------i~~---~~v~~~~~p~~K--~~~v~~l~--~~g 751 (883)
++.+++.+.++.|+++|+++.++|+. ....+..+.+..| +.. ..+.+.-.|+.+ ...++.+. -..
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~~~p 108 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGVLKP 108 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCCCCc
Confidence 67899999999999999999999999 7888878778777 321 112221233322 23334444 344
Q ss_pred CeEEEEcCCccCHHHHHh
Q 002770 752 HHVAMVGDGINDAPSLAL 769 (883)
Q Consensus 752 ~~v~~vGDg~ND~~al~~ 769 (883)
+.++||||...|...++.
T Consensus 109 ~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 109 KSILFVDDRPDNNEEVDY 126 (128)
T ss_pred ceEEEECCCHhHHHHHHh
Confidence 789999999999877653
No 152
>PLN02580 trehalose-phosphatase
Probab=95.20 E-value=0.12 Score=57.86 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=46.2
Q ss_pred ecCcc---chHHHHHHHhhc-C---C---eEEEEcCCccCHHHHHh-----CCeeEEeecCCccHHHHhhcCEEEeCCCh
Q 002770 734 SLTPQ---QKSEVISTLQTS-G---H---HVAMVGDGINDAPSLAL-----ADVGIALQIEAQENAASTAASIILLGNKL 798 (883)
Q Consensus 734 ~~~p~---~K~~~v~~l~~~-g---~---~v~~vGDg~ND~~al~~-----AdvgIa~~~~~~~~~a~~~ad~vl~~~~~ 798 (883)
++.|. +|...++.+.+. | . .++++||+.||..|++. +++||+| +++... -.|++.+. +.
T Consensus 293 EVrP~~g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~I~V--gn~~~~--t~A~y~L~--dp 366 (384)
T PLN02580 293 EVRPVIDWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGILV--SSVPKE--SNAFYSLR--DP 366 (384)
T ss_pred EEecCCCCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceEEEE--ecCCCC--ccceEEcC--CH
Confidence 34553 788888777654 2 1 25899999999999996 6899999 554432 25777774 46
Q ss_pred hhHHHHHH
Q 002770 799 SQVVDALD 806 (883)
Q Consensus 799 ~~l~~~i~ 806 (883)
..+..+++
T Consensus 367 ~eV~~~L~ 374 (384)
T PLN02580 367 SEVMEFLK 374 (384)
T ss_pred HHHHHHHH
Confidence 66665554
No 153
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=95.17 E-value=0.083 Score=52.25 Aligned_cols=105 Identities=14% Similarity=0.218 Sum_probs=80.0
Q ss_pred CCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCC--EEEEEcCC-------cHHHHHHHHHHcCCCCceE-
Q 002770 662 SNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGI--KTLLLSGD-------REEAVAATAKEVGIGKEYI- 731 (883)
Q Consensus 662 ~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi--~v~~lTGd-------~~~~a~~ia~~~gi~~~~v- 731 (883)
.+.|.+.+.+-.||- + ..--++++.++..+.+++|++.+. +++++|.. +...|..+.+.+||+ .+
T Consensus 37 k~~Gik~li~DkDNT-L--~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp--vl~ 111 (168)
T PF09419_consen 37 KKKGIKALIFDKDNT-L--TPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP--VLR 111 (168)
T ss_pred hhcCceEEEEcCCCC-C--CCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc--EEE
Confidence 456677777776765 2 123478889999999999999976 59999976 488999999999996 33
Q ss_pred EEecCccchHHHHHHHhhc-----CCeEEEEcCC-ccCHHHHHhCC
Q 002770 732 NSSLTPQQKSEVISTLQTS-----GHHVAMVGDG-INDAPSLALAD 771 (883)
Q Consensus 732 ~~~~~p~~K~~~v~~l~~~-----g~~v~~vGDg-~ND~~al~~Ad 771 (883)
+..-.|....++.+.++.+ .+.++||||- ..|+-+-...+
T Consensus 112 h~~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G 157 (168)
T PF09419_consen 112 HRAKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMG 157 (168)
T ss_pred eCCCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccC
Confidence 4456887777888888765 6789999997 56776655555
No 154
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=95.00 E-value=0.066 Score=55.75 Aligned_cols=90 Identities=13% Similarity=0.130 Sum_probs=63.7
Q ss_pred cCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHc---CCCC--ceEEE-e--cCccc--hHHHHHHHhhcCCeE
Q 002770 685 SDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEV---GIGK--EYINS-S--LTPQQ--KSEVISTLQTSGHHV 754 (883)
Q Consensus 685 ~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~---gi~~--~~v~~-~--~~p~~--K~~~v~~l~~~g~~v 754 (883)
+-++.+++.+++++|+++|+++.++|..+......+-+.. ++.. +.++. . ..|+. =..+++.+.-..+.+
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e~ 172 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPREI 172 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhHE
Confidence 4468899999999999999999999998888777776664 3311 11221 1 12221 134445554445789
Q ss_pred EEEcCCccCHHHHHhCCeeE
Q 002770 755 AMVGDGINDAPSLALADVGI 774 (883)
Q Consensus 755 ~~vGDg~ND~~al~~AdvgI 774 (883)
+||||...|+.+-+.|++-.
T Consensus 173 lfVgDs~~Di~AA~~AG~~t 192 (220)
T TIGR01691 173 LFLSDIINELDAARKAGLHT 192 (220)
T ss_pred EEEeCCHHHHHHHHHcCCEE
Confidence 99999999999999999754
No 155
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.79 E-value=0.12 Score=66.11 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=77.9
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC---ceEEEe-----cCccc--hHHHHHHHhhcCCeEEEE
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK---EYINSS-----LTPQQ--KSEVISTLQTSGHHVAMV 757 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~---~~v~~~-----~~p~~--K~~~v~~l~~~g~~v~~v 757 (883)
+-|++.+.+++|+++|+++.++|+-....+....+.+|+.. +.+++. ..|+. =...++.+.-..+.++||
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~I 241 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVI 241 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEE
Confidence 56899999999999999999999999999999999999851 223221 12221 134445554456789999
Q ss_pred cCCccCHHHHHhCCe-eEEeecC-CccHHHHhhcCEEEeCCChhhH
Q 002770 758 GDGINDAPSLALADV-GIALQIE-AQENAASTAASIILLGNKLSQV 801 (883)
Q Consensus 758 GDg~ND~~al~~Adv-gIa~~~~-~~~~~a~~~ad~vl~~~~~~~l 801 (883)
||..+|+.+-+.|++ .|++..+ ...+.....+|+++.+ +..+
T Consensus 242 gDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~--l~el 285 (1057)
T PLN02919 242 EDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKD--IGNI 285 (1057)
T ss_pred cCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECC--hHHC
Confidence 999999999999997 4444222 2222334567777743 5443
No 156
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.62 E-value=0.11 Score=52.58 Aligned_cols=90 Identities=23% Similarity=0.335 Sum_probs=65.5
Q ss_pred CCChhHHHHHHHHHHCCC-EEEEEcCCcHHHHHHHHHHcCCCCc------------------------eEEEecCcc--c
Q 002770 687 SLRHDAEHTVRSLQQKGI-KTLLLSGDREEAVAATAKEVGIGKE------------------------YINSSLTPQ--Q 739 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi-~v~~lTGd~~~~a~~ia~~~gi~~~------------------------~v~~~~~p~--~ 739 (883)
|+-|+..++|+.+++.|- .++++|--|.-....+.+..||..- ..-|++.|. -
T Consensus 84 P~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmC 163 (256)
T KOG3120|consen 84 PIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMC 163 (256)
T ss_pred CCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhh
Confidence 668899999999999996 8999999999999999999998210 012333444 3
Q ss_pred hHHHHHHHhhcC-------CeEEEEcCCccCH-HHHHhCCeeEEe
Q 002770 740 KSEVISTLQTSG-------HHVAMVGDGINDA-PSLALADVGIAL 776 (883)
Q Consensus 740 K~~~v~~l~~~g-------~~v~~vGDg~ND~-~al~~AdvgIa~ 776 (883)
|..++..++..+ +++.++|||.||. |+++...--+||
T Consensus 164 Kg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~am 208 (256)
T KOG3120|consen 164 KGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAM 208 (256)
T ss_pred hhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceec
Confidence 777777765532 3899999999994 555544444444
No 157
>PRK10444 UMP phosphatase; Provisional
Probab=94.56 E-value=0.23 Score=52.78 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=40.7
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHH---cCC
Q 002770 680 GAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKE---VGI 726 (883)
Q Consensus 680 G~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~---~gi 726 (883)
|++.-.+.+-|++.++++.|+++|++++++|++...+...++++ +|+
T Consensus 10 GtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~ 59 (248)
T PRK10444 10 GVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGV 59 (248)
T ss_pred CceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 56677788899999999999999999999999998887777766 466
No 158
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=94.41 E-value=0.11 Score=53.09 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=59.0
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHH-cCCCC--ceEE-Eec----Cccc--hHHHHHHHhhcCCeEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKE-VGIGK--EYIN-SSL----TPQQ--KSEVISTLQTSGHHVAM 756 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~-~gi~~--~~v~-~~~----~p~~--K~~~v~~l~~~g~~v~~ 756 (883)
++.|++.++++.|++.|+++.++|.-+.......... .++.. +.++ +.- .|+- =..+++.+.-....++|
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 163 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF 163 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence 3689999999999999999999998876655443322 23321 1222 221 2221 13334444444578999
Q ss_pred EcCCccCHHHHHhCCeeE
Q 002770 757 VGDGINDAPSLALADVGI 774 (883)
Q Consensus 757 vGDg~ND~~al~~AdvgI 774 (883)
|||...|+.+-+.+++-.
T Consensus 164 vgD~~~di~aA~~aG~~~ 181 (199)
T PRK09456 164 FDDNADNIEAANALGITS 181 (199)
T ss_pred eCCCHHHHHHHHHcCCEE
Confidence 999999999999999843
No 159
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=94.25 E-value=0.31 Score=52.22 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=36.8
Q ss_pred EEEEecCC----CChhHHHHHHHHHHCCCEEEEEcCCcHHH---HHHHHHHcCC
Q 002770 680 GAIAISDS----LRHDAEHTVRSLQQKGIKTLLLSGDREEA---VAATAKEVGI 726 (883)
Q Consensus 680 G~i~l~D~----lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~---a~~ia~~~gi 726 (883)
|++.-.+. +-|++.++|++|+++|++++++||++..+ .....+++|+
T Consensus 10 Gtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~ 63 (257)
T TIGR01458 10 GVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGF 63 (257)
T ss_pred CeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 55566666 88899999999999999999999876664 4444555676
No 160
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=94.15 E-value=0.054 Score=55.97 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=58.5
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHH--HHHHHHHcCCCC--ceEEEe-----cCccch--HHHHHHHhhcCCeEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEA--VAATAKEVGIGK--EYINSS-----LTPQQK--SEVISTLQTSGHHVA 755 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~--a~~ia~~~gi~~--~~v~~~-----~~p~~K--~~~v~~l~~~g~~v~ 755 (883)
++.|++.+.++.|+++|+++.++|...... ........++.. +.++.. ..|+.. ..+++.+.-....++
T Consensus 94 ~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~l 173 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEECV 173 (211)
T ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 568999999999999999999999865432 222223344421 133322 123321 233344443456799
Q ss_pred EEcCCccCHHHHHhCCe-eEEe
Q 002770 756 MVGDGINDAPSLALADV-GIAL 776 (883)
Q Consensus 756 ~vGDg~ND~~al~~Adv-gIa~ 776 (883)
||||...|+.+-+.|++ .|.+
T Consensus 174 ~i~D~~~di~aA~~aG~~~i~v 195 (211)
T TIGR02247 174 FLDDLGSNLKPAAALGITTIKV 195 (211)
T ss_pred EEcCCHHHHHHHHHcCCEEEEE
Confidence 99999999999999997 4444
No 161
>PLN02645 phosphoglycolate phosphatase
Probab=93.89 E-value=0.11 Score=57.20 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=64.3
Q ss_pred eEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH---HHcCCCC--ceEEEecCccchH
Q 002770 667 SVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATA---KEVGIGK--EYINSSLTPQQKS 741 (883)
Q Consensus 667 ~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia---~~~gi~~--~~v~~~~~p~~K~ 741 (883)
..+++-.+| ++.-.+.+-+++.++|++|+++|++++++|++...+...++ +.+|+.. +.++.... ...
T Consensus 29 ~~~~~D~DG-----tl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~--~~~ 101 (311)
T PLN02645 29 ETFIFDCDG-----VIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSF--AAA 101 (311)
T ss_pred CEEEEeCcC-----CeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHH--HHH
Confidence 344554444 45556777899999999999999999999999966666655 5678742 23332211 112
Q ss_pred HHHHHHhh-cCCeEEEEcCCccCHHHHHhCCeeEE
Q 002770 742 EVISTLQT-SGHHVAMVGDGINDAPSLALADVGIA 775 (883)
Q Consensus 742 ~~v~~l~~-~g~~v~~vGDg~ND~~al~~AdvgIa 775 (883)
..++.... .+.. +++++...|...++.+++=+.
T Consensus 102 ~~l~~~~~~~~~~-V~viG~~~~~~~l~~~Gi~~~ 135 (311)
T PLN02645 102 AYLKSINFPKDKK-VYVIGEEGILEELELAGFQYL 135 (311)
T ss_pred HHHHhhccCCCCE-EEEEcCHHHHHHHHHCCCEEe
Confidence 22222211 1234 566666789999998887543
No 162
>PLN03017 trehalose-phosphatase
Probab=93.86 E-value=0.56 Score=52.27 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=43.9
Q ss_pred CCCCeEEEEEecCceEEEEEEecC--CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH
Q 002770 663 NYSKSVVYVGREGEGIIGAIAISD--SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATA 721 (883)
Q Consensus 663 ~~g~~~~~~a~~~~~~lG~i~l~D--~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia 721 (883)
.....++++-+||. ++-+..-.| .+.++..++|++|+ .|++++++||+.......+.
T Consensus 108 ~~k~~llflD~DGT-L~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 108 RGKQIVMFLDYDGT-LSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred cCCCeEEEEecCCc-CcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 34456777778887 665544333 48899999999999 78999999999988887664
No 163
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=93.69 E-value=0.23 Score=49.99 Aligned_cols=85 Identities=7% Similarity=0.114 Sum_probs=62.3
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEEec---------Cccch--HHHHHHHhhcCCe
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINSSL---------TPQQK--SEVISTLQTSGHH 753 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~~~---------~p~~K--~~~v~~l~~~g~~ 753 (883)
++.+++.+++++|+ .+++++|+-+...+....+.+|+.. +.+++.- .|+.. ..+++.+......
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 160 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPER 160 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccc
Confidence 36789999999998 4789999999999999999999852 2333321 33221 3444445445678
Q ss_pred EEEEcCCccCHHHHHhCCeeE
Q 002770 754 VAMVGDGINDAPSLALADVGI 774 (883)
Q Consensus 754 v~~vGDg~ND~~al~~AdvgI 774 (883)
++||||...|+.+-+.+++-.
T Consensus 161 ~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 161 AIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred eEEEeCCHHHHHHHHHcCCEE
Confidence 999999999999999998743
No 164
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=93.51 E-value=0.15 Score=53.10 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=61.8
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc---eEEEe-cCccch------HHHHHHHhhcCCeEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE---YINSS-LTPQQK------SEVISTLQTSGHHVAM 756 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~---~v~~~-~~p~~K------~~~v~~l~~~g~~v~~ 756 (883)
++.+++.++++.| ++++.++|+.....+...-+..|+... .+++. -....| ....+.+.-..+.++|
T Consensus 88 ~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~ 164 (221)
T PRK10563 88 EPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCIL 164 (221)
T ss_pred CcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 4567899999988 489999999998888888888898521 23222 111122 3333334334467999
Q ss_pred EcCCccCHHHHHhCCeeEEe
Q 002770 757 VGDGINDAPSLALADVGIAL 776 (883)
Q Consensus 757 vGDg~ND~~al~~AdvgIa~ 776 (883)
|||..+|+.+-+.|++....
T Consensus 165 igDs~~di~aA~~aG~~~i~ 184 (221)
T PRK10563 165 VDDSSAGAQSGIAAGMEVFY 184 (221)
T ss_pred EeCcHhhHHHHHHCCCEEEE
Confidence 99999999999999987653
No 165
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.44 E-value=0.39 Score=48.66 Aligned_cols=54 Identities=15% Similarity=0.340 Sum_probs=40.7
Q ss_pred EEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCC
Q 002770 668 VVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGI 726 (883)
Q Consensus 668 ~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi 726 (883)
+++...|+. +++ =+.+ -..+.+.+.+|+++|++|+.+|.........+-+.+|+
T Consensus 9 lIFtDlD~T-Ll~-~~ye---~~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v 62 (274)
T COG3769 9 LIFTDLDGT-LLP-HSYE---WQPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGV 62 (274)
T ss_pred EEEEcccCc-ccC-CCCC---CCccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Confidence 455555554 544 1111 23467899999999999999999999999999999997
No 166
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=93.44 E-value=0.12 Score=46.80 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=55.2
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH---HHcCCC--CceEEEecCccchHHHHHHHhh--cCC
Q 002770 680 GAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATA---KEVGIG--KEYINSSLTPQQKSEVISTLQT--SGH 752 (883)
Q Consensus 680 G~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia---~~~gi~--~~~v~~~~~p~~K~~~v~~l~~--~g~ 752 (883)
|++...+++-|++.++|+.|+++|++++++|.....+...++ +.+|++ .+.++... ....+.|++ .+.
T Consensus 7 Gvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~-----~~~~~~l~~~~~~~ 81 (101)
T PF13344_consen 7 GVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSG-----MAAAEYLKEHKGGK 81 (101)
T ss_dssp TTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHH-----HHHHHHHHHHTTSS
T ss_pred cEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChH-----HHHHHHHHhcCCCC
Confidence 445567888999999999999999999999987655444443 667885 12233211 123344444 477
Q ss_pred eEEEEcCCccCHHHHHhCCe
Q 002770 753 HVAMVGDGINDAPSLALADV 772 (883)
Q Consensus 753 ~v~~vGDg~ND~~al~~Adv 772 (883)
+|..+|.. .....++.+++
T Consensus 82 ~v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 82 KVYVLGSD-GLREELREAGF 100 (101)
T ss_dssp EEEEES-H-HHHHHHHHTTE
T ss_pred EEEEEcCH-HHHHHHHHcCC
Confidence 89999975 55666666553
No 167
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=93.16 E-value=0.71 Score=57.64 Aligned_cols=58 Identities=12% Similarity=0.226 Sum_probs=43.4
Q ss_pred CCeEEEEEecCceEEEEEEecCCCChhHHHHHHHH-HHCCCEEEEEcCCcHHHHHHHHHH
Q 002770 665 SKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSL-QQKGIKTLLLSGDREEAVAATAKE 723 (883)
Q Consensus 665 g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L-~~~Gi~v~~lTGd~~~~a~~ia~~ 723 (883)
..+.+++-+||. ++-.-...-.+.++..+++++| ++.|..++++||+........-..
T Consensus 595 ~~rlI~LDyDGT-Llp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 595 TTRAILLDYDGT-LMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred cCeEEEEecCCc-ccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 457778888886 5422222335678999999998 778999999999999888766644
No 168
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=93.03 E-value=0.83 Score=48.63 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=38.9
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCEEEEEcC---CcHHHHHHHHHHcCC
Q 002770 680 GAIAISDSLRHDAEHTVRSLQQKGIKTLLLSG---DREEAVAATAKEVGI 726 (883)
Q Consensus 680 G~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTG---d~~~~a~~ia~~~gi 726 (883)
|++.-.+.+-+++.++|++|+++|++++++|| +.........+++|+
T Consensus 10 Gtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~ 59 (249)
T TIGR01457 10 GTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDI 59 (249)
T ss_pred CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 44555677778999999999999999999996 677777777777887
No 169
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=92.61 E-value=0.14 Score=53.69 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCCcHHH---HHHHHHHcCCCC-ceEEEecCc--c------chHHHHHHHhhcCC-eEE
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGDREEA---VAATAKEVGIGK-EYINSSLTP--Q------QKSEVISTLQTSGH-HVA 755 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd~~~~---a~~ia~~~gi~~-~~v~~~~~p--~------~K~~~v~~l~~~g~-~v~ 755 (883)
-|++.+.++.+++.|++|+++||++... ...=.++.|+.. +.++.+... . -|...-+.+++.|+ .++
T Consensus 117 ip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~Ii~ 196 (229)
T PF03767_consen 117 IPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYRIIA 196 (229)
T ss_dssp ETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEEEEE
T ss_pred cHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCCcEEE
Confidence 4678999999999999999999987663 333456678854 344433222 2 38888888988865 678
Q ss_pred EEcCCccCHHH
Q 002770 756 MVGDGINDAPS 766 (883)
Q Consensus 756 ~vGDg~ND~~a 766 (883)
++||..+|...
T Consensus 197 ~iGD~~~D~~~ 207 (229)
T PF03767_consen 197 NIGDQLSDFSG 207 (229)
T ss_dssp EEESSGGGCHC
T ss_pred EeCCCHHHhhc
Confidence 99999999775
No 170
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=92.55 E-value=0.22 Score=50.18 Aligned_cols=81 Identities=9% Similarity=0.092 Sum_probs=58.3
Q ss_pred HHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEEEe-c----Cccc--hHHHHHHHhhcCCeEEEEcCCcc
Q 002770 692 AEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYINSS-L----TPQQ--KSEVISTLQTSGHHVAMVGDGIN 762 (883)
Q Consensus 692 ~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~~~-~----~p~~--K~~~v~~l~~~g~~v~~vGDg~N 762 (883)
..+.++.|++. ++..++|+.....+....+..|+.. +.+.+. - .|+. =....+.++-....++||||..+
T Consensus 92 ~~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~igDs~~ 170 (188)
T PRK10725 92 LIEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDADF 170 (188)
T ss_pred HHHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEeccHh
Confidence 35889999865 8999999999999999999999852 122221 1 1211 13334444434567999999999
Q ss_pred CHHHHHhCCee
Q 002770 763 DAPSLALADVG 773 (883)
Q Consensus 763 D~~al~~Advg 773 (883)
|+.+-+.|++-
T Consensus 171 di~aA~~aG~~ 181 (188)
T PRK10725 171 GIQAARAAGMD 181 (188)
T ss_pred hHHHHHHCCCE
Confidence 99999999973
No 171
>PHA02597 30.2 hypothetical protein; Provisional
Probab=92.54 E-value=0.28 Score=50.00 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=55.5
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC------ceE-EEecCccchHHHHHH-HhhcC-CeEEEEc
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK------EYI-NSSLTPQQKSEVIST-LQTSG-HHVAMVG 758 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~------~~v-~~~~~p~~K~~~v~~-l~~~g-~~v~~vG 758 (883)
+.|++.+++++|++.+ +.+++|.-+........+.+|+.. +.+ .++... .|-+++.. +++.| +.++|||
T Consensus 75 ~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~-~kp~~~~~a~~~~~~~~~v~vg 152 (197)
T PHA02597 75 AYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDE-SKEKLFIKAKEKYGDRVVCFVD 152 (197)
T ss_pred CCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCc-ccHHHHHHHHHHhCCCcEEEeC
Confidence 5789999999999875 566777655555554556666631 112 222221 24444333 22233 4688999
Q ss_pred CCccCHHHHHhC--Ce-eEEe
Q 002770 759 DGINDAPSLALA--DV-GIAL 776 (883)
Q Consensus 759 Dg~ND~~al~~A--dv-gIa~ 776 (883)
|..+|+.+-++| |+ .|.+
T Consensus 153 Ds~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 153 DLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred CCHHHHHHHHHHHcCCcEEEe
Confidence 999999999999 97 3444
No 172
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=91.39 E-value=1.1 Score=38.56 Aligned_cols=65 Identities=28% Similarity=0.471 Sum_probs=49.8
Q ss_pred EEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcc
Q 002770 73 TVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEA 146 (883)
Q Consensus 73 ~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~ 146 (883)
+..+.+.||.|.+|...++..+...+++....++....+..+.++... ...+.+...+.+.||..
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~ 88 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEK---------TNVKALTEATTDAGYPS 88 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCC---------CCHHHHHHHHHhcCCCe
Confidence 456779999999999999999999999998999988888777665432 23445555556777764
No 173
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=90.97 E-value=1.9 Score=46.73 Aligned_cols=90 Identities=14% Similarity=0.223 Sum_probs=57.9
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHH---HHHHHHcCCCCc--eEEEecCccchHHHHHHHhh---cC
Q 002770 680 GAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAV---AATAKEVGIGKE--YINSSLTPQQKSEVISTLQT---SG 751 (883)
Q Consensus 680 G~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a---~~ia~~~gi~~~--~v~~~~~p~~K~~~v~~l~~---~g 751 (883)
|++.-.+..-+++.++|++|++.|++++++|+....+. ..-.+.+|+... .++ ++.. ...+.|++ .+
T Consensus 11 Gtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~---ts~~--~~~~~l~~~~~~~ 85 (279)
T TIGR01452 11 GVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLF---SSAL--CAARLLRQPPDAP 85 (279)
T ss_pred CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEe---cHHH--HHHHHHHhhCcCC
Confidence 44555677788899999999999999999999654333 233466787421 222 1111 22233444 35
Q ss_pred CeEEEEcCCccCHHHHHhCCeeEE
Q 002770 752 HHVAMVGDGINDAPSLALADVGIA 775 (883)
Q Consensus 752 ~~v~~vGDg~ND~~al~~AdvgIa 775 (883)
..|.++|+. .....++.+++-+.
T Consensus 86 ~~v~~iG~~-~~~~~l~~~g~~~~ 108 (279)
T TIGR01452 86 KAVYVIGEE-GLRAELDAAGIRLA 108 (279)
T ss_pred CEEEEEcCH-HHHHHHHHCCCEEe
Confidence 689999985 34566777776654
No 174
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=90.57 E-value=1.6 Score=46.50 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=54.1
Q ss_pred CCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHH---HHHcCCCC-ceEEEecCc--------cchHHHHHHHhhcCC-
Q 002770 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAAT---AKEVGIGK-EYINSSLTP--------QQKSEVISTLQTSGH- 752 (883)
Q Consensus 686 D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~i---a~~~gi~~-~~v~~~~~p--------~~K~~~v~~l~~~g~- 752 (883)
.+.-|++.+..+.+++.|++++++||+....-... .++.|... +.++-+-.. +.|...-+.+.++|+
T Consensus 144 ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYr 223 (275)
T TIGR01680 144 APALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYN 223 (275)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCce
Confidence 45567999999999999999999999986533222 24468852 344444221 124444455666765
Q ss_pred eEEEEcCCccCHH
Q 002770 753 HVAMVGDGINDAP 765 (883)
Q Consensus 753 ~v~~vGDg~ND~~ 765 (883)
.++.+||..+|..
T Consensus 224 Iv~~iGDq~sDl~ 236 (275)
T TIGR01680 224 IVGIIGDQWNDLK 236 (275)
T ss_pred EEEEECCCHHhcc
Confidence 5678999999973
No 175
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=90.52 E-value=0.55 Score=48.99 Aligned_cols=88 Identities=13% Similarity=0.096 Sum_probs=70.3
Q ss_pred CCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc---eEE------EecCccchHHHHHHHhhcCCeEEE
Q 002770 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE---YIN------SSLTPQQKSEVISTLQTSGHHVAM 756 (883)
Q Consensus 686 D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~---~v~------~~~~p~~K~~~v~~l~~~g~~v~~ 756 (883)
.++.+++.+.+++|++.|+.+.+.|+-+...+..+.+.+|+... .+. ..-.|+-=+...+.|.-....++.
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cvv 164 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECVV 164 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeEE
Confidence 36789999999999999999999999999999999999998521 111 123344446666666556788999
Q ss_pred EcCCccCHHHHHhCCee
Q 002770 757 VGDGINDAPSLALADVG 773 (883)
Q Consensus 757 vGDg~ND~~al~~Advg 773 (883)
|.|..|.+.|-++|+.-
T Consensus 165 iEDs~~Gi~Aa~aAGm~ 181 (221)
T COG0637 165 VEDSPAGIQAAKAAGMR 181 (221)
T ss_pred EecchhHHHHHHHCCCE
Confidence 99999999999999953
No 176
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=90.43 E-value=0.53 Score=49.69 Aligned_cols=83 Identities=14% Similarity=0.266 Sum_probs=54.0
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC--ceEE-Eec----Cccch--HHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK--EYIN-SSL----TPQQK--SEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~--~~v~-~~~----~p~~K--~~~v~~l~~~g~~v~~v 757 (883)
++-|++.++++.|++. +++.++|..+.. .+..|+.. +.++ +.- .|... ...++.+.-....++||
T Consensus 113 ~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~V 186 (238)
T PRK10748 113 DVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHV 186 (238)
T ss_pred CCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEE
Confidence 4568999999999875 899999976544 25667742 1222 221 22211 22233343345679999
Q ss_pred cCC-ccCHHHHHhCCeeEE
Q 002770 758 GDG-INDAPSLALADVGIA 775 (883)
Q Consensus 758 GDg-~ND~~al~~AdvgIa 775 (883)
||. ..|+.+-+.|++-..
T Consensus 187 GD~~~~Di~~A~~aG~~~i 205 (238)
T PRK10748 187 GDDLTTDVAGAIRCGMQAC 205 (238)
T ss_pred cCCcHHHHHHHHHCCCeEE
Confidence 999 599999999997443
No 177
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=89.94 E-value=1.1 Score=45.03 Aligned_cols=49 Identities=16% Similarity=0.345 Sum_probs=40.9
Q ss_pred EEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH---HHcCC
Q 002770 678 IIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATA---KEVGI 726 (883)
Q Consensus 678 ~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia---~~~gi 726 (883)
+-|.+.++|..-|++.|+++.|+.++.+|..+|.-..++-+.+. +++|+
T Consensus 14 lSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf 65 (262)
T KOG3040|consen 14 LSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGF 65 (262)
T ss_pred ccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCC
Confidence 56999999999999999999999999999999876666555554 44676
No 178
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.22 E-value=11 Score=44.34 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=35.5
Q ss_pred cccCCCeEEEeeCCCcCCCCEEEECCCCeeeeeEEEEee
Q 002770 333 VLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAG 371 (883)
Q Consensus 333 ~~~~dg~~~~V~~~~l~~GDiV~v~~Ge~IPaDg~vl~G 371 (883)
+.+|||...++|..-|+.||||-++||+.-||.+.=++|
T Consensus 159 ~afRDGhlm~lP~~LLVeGDiIa~RPGQeafan~~g~~d 197 (1354)
T KOG4383|consen 159 SAFRDGHLMELPRILLVEGDIIAFRPGQEAFANCEGFDD 197 (1354)
T ss_pred HHhccCeeeecceeEEEeccEEEecCCccccccccccCC
Confidence 457999999999999999999999999999998877665
No 179
>PLN02151 trehalose-phosphatase
Probab=88.19 E-value=5.7 Score=44.24 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=40.3
Q ss_pred CCCeEEEEEecCceEEEEEEecC--CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH
Q 002770 664 YSKSVVYVGREGEGIIGAIAISD--SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATA 721 (883)
Q Consensus 664 ~g~~~~~~a~~~~~~lG~i~l~D--~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia 721 (883)
....++++-+||. ++-+.---| .+.++..++|+.|. .+..++++||++......+.
T Consensus 96 ~~~~ll~lDyDGT-L~PIv~~P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 153 (354)
T PLN02151 96 GKQIVMFLDYDGT-LSPIVDDPDRAFMSKKMRNTVRKLA-KCFPTAIVSGRCREKVSSFV 153 (354)
T ss_pred CCceEEEEecCcc-CCCCCCCcccccCCHHHHHHHHHHh-cCCCEEEEECCCHHHHHHHc
Confidence 3456777788886 554332223 36789999999998 45799999999887776554
No 180
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=87.59 E-value=1.2 Score=48.07 Aligned_cols=57 Identities=19% Similarity=0.377 Sum_probs=45.8
Q ss_pred EEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC
Q 002770 668 VVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK 728 (883)
Q Consensus 668 ~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~ 728 (883)
+++.-.||. ++. =.+.+.+++.++|++|+++|++++++||++...+..+.+++|+..
T Consensus 6 li~~DlDGT-Ll~---~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~ 62 (273)
T PRK00192 6 LVFTDLDGT-LLD---HHTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLED 62 (273)
T ss_pred EEEEcCccc-CcC---CCCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC
Confidence 445555654 332 134677889999999999999999999999999999999999853
No 181
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=86.95 E-value=7.4 Score=45.66 Aligned_cols=86 Identities=13% Similarity=0.151 Sum_probs=60.3
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHH-cCCCCc-----------eEEEe------cCccchHHHHHHHhh
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKE-VGIGKE-----------YINSS------LTPQQKSEVISTLQT 749 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~-~gi~~~-----------~v~~~------~~p~~K~~~v~~l~~ 749 (883)
+++++.+ .++++|.+ +++|+-...-++.+|++ +|++.. .+..+ +.-++|.+-++....
T Consensus 111 l~~~a~~---~~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g 186 (497)
T PLN02177 111 VHPETWR---VFNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFG 186 (497)
T ss_pred cCHHHHH---HHHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhC
Confidence 5666555 44567755 99999999999999987 898621 01111 233458777764332
Q ss_pred cCCeEEEEcCCccCHHHHHhCCeeEEee
Q 002770 750 SGHHVAMVGDGINDAPSLALADVGIALQ 777 (883)
Q Consensus 750 ~g~~v~~vGDg~ND~~al~~AdvgIa~~ 777 (883)
......+.||..||.|||+.||-..+++
T Consensus 187 ~~~~~~aYgDS~sD~plL~~a~e~y~V~ 214 (497)
T PLN02177 187 DALPDLGLGDRETDHDFMSICKEGYMVP 214 (497)
T ss_pred CCCceEEEECCccHHHHHHhCCccEEeC
Confidence 1122378999999999999999999993
No 182
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=86.71 E-value=1.4 Score=45.64 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=36.7
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIG 727 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~ 727 (883)
..+.++++|++|+++|++++++||++...+..+.+.+|+.
T Consensus 17 ~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 17 DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 4455899999999999999999999999999999999985
No 183
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=86.68 E-value=0.57 Score=46.32 Aligned_cols=89 Identities=8% Similarity=0.013 Sum_probs=61.8
Q ss_pred cCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCce---EEEe-cCccchHHHHHHHhh---cCCeEEEE
Q 002770 685 SDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEY---INSS-LTPQQKSEVISTLQT---SGHHVAMV 757 (883)
Q Consensus 685 ~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~---v~~~-~~p~~K~~~v~~l~~---~g~~v~~v 757 (883)
.=..||++.+.+++|.+. +++++.|......|..+.+.++..... ++.+ -....|..+++.|.. ....|+||
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiV 118 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVIII 118 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEEE
Confidence 335799999999999987 999999999999999999999975311 2221 111112224444443 34679999
Q ss_pred cCCccCHHHHHhCCeeE
Q 002770 758 GDGINDAPSLALADVGI 774 (883)
Q Consensus 758 GDg~ND~~al~~AdvgI 774 (883)
||...|..+-..+++-|
T Consensus 119 DD~~~~~~~~~~NgI~i 135 (162)
T TIGR02251 119 DNSPYSYSLQPDNAIPI 135 (162)
T ss_pred eCChhhhccCccCEeec
Confidence 99988876655554443
No 184
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=85.25 E-value=5 Score=39.25 Aligned_cols=89 Identities=13% Similarity=0.087 Sum_probs=64.6
Q ss_pred cCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHH---HHHHc-----CCCCceEEE---------------ecCccchH
Q 002770 685 SDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAA---TAKEV-----GIGKEYINS---------------SLTPQQKS 741 (883)
Q Consensus 685 ~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~---ia~~~-----gi~~~~v~~---------------~~~p~~K~ 741 (883)
.|..++++.+..+.+++.|++++-+|+++...+.. ..++. +++.-.+.. +-..+.|.
T Consensus 25 ~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~~al~rEvi~~~p~~fK~ 104 (157)
T PF08235_consen 25 KDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLFSALHREVISKDPEEFKI 104 (157)
T ss_pred chhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchhhhhhccccccChHHHHH
Confidence 36889999999999999999999999998765543 33333 443222221 11233688
Q ss_pred HHHHHHhhc-----CCeEEEEcCCccCHHHHHhCCee
Q 002770 742 EVISTLQTS-----GHHVAMVGDGINDAPSLALADVG 773 (883)
Q Consensus 742 ~~v~~l~~~-----g~~v~~vGDg~ND~~al~~Advg 773 (883)
..++.++.. ....+..|+..+|+.+-++++|-
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 889988874 34678899999999999887753
No 185
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=84.40 E-value=2.9 Score=43.33 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=70.7
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc---eEEEe----cCccch--HHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE---YINSS----LTPQQK--SEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~---~v~~~----~~p~~K--~~~v~~l~~~g~~v~~v 757 (883)
+.-+++.+++++|++. ++++++|.-.........+++|+.+. .+.+. ..|+.+ ..+.+.+.-....++||
T Consensus 99 ~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~V 177 (229)
T COG1011 99 PDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFV 177 (229)
T ss_pred ccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEEE
Confidence 4567889999999988 99999998788888999999997421 12222 344333 22333333335679999
Q ss_pred cCC-ccCHHHHHhCCe-eEEeecCCcc-HHHHhhcCEEEeCCChhhHHHHH
Q 002770 758 GDG-INDAPSLALADV-GIALQIEAQE-NAASTAASIILLGNKLSQVVDAL 805 (883)
Q Consensus 758 GDg-~ND~~al~~Adv-gIa~~~~~~~-~~a~~~ad~vl~~~~~~~l~~~i 805 (883)
||. .||+..-+.++. +|-+...... .......+..+ .++..+..++
T Consensus 178 gD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i--~~l~~l~~~~ 226 (229)
T COG1011 178 GDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEI--SSLAELLDLL 226 (229)
T ss_pred CCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEE--cCHHHHHHHH
Confidence 996 677466666665 5555111111 01114455555 3366665554
No 186
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=83.04 E-value=3.2 Score=48.83 Aligned_cols=83 Identities=13% Similarity=0.203 Sum_probs=55.0
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcH------------HHHHHHHHHcCCCCceEEEecC-ccch--HHHHHHH-hhc-
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDRE------------EAVAATAKEVGIGKEYINSSLT-PQQK--SEVISTL-QTS- 750 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~------------~~a~~ia~~~gi~~~~v~~~~~-p~~K--~~~v~~l-~~~- 750 (883)
+-+++.+.++.|++.|++++++|.-.. ..+..+.+++|+.-+.+++.-. .-.| -..+..+ ++.
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdviia~~~~~~RKP~pGm~~~a~~~~~ 277 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQVFIAIGAGFYRKPLTGMWDHLKEEAN 277 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceEEEEeCCCCCCCCCCHHHHHHHHHhcC
Confidence 468999999999999999999997555 3577889999986333332110 0012 2233222 221
Q ss_pred ------CCeEEEEcCCccCHHHHHhC
Q 002770 751 ------GHHVAMVGDGINDAPSLALA 770 (883)
Q Consensus 751 ------g~~v~~vGDg~ND~~al~~A 770 (883)
...+.||||...|..+-+.|
T Consensus 278 ~~~~Id~~~S~~VGDaagr~~~g~~a 303 (526)
T TIGR01663 278 DGTEIQEDDCFFVGDAAGRPANGKAA 303 (526)
T ss_pred cccCCCHHHeEEeCCcccchHHHHhc
Confidence 24789999999998764433
No 187
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=82.69 E-value=6.6 Score=39.02 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=58.8
Q ss_pred CChhHHHHHHHHHHCCCEEEEEc-CCcHHHHHHHHHHcCCC----------CceEEEecCccchHHHHHHHhhc----CC
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLS-GDREEAVAATAKEVGIG----------KEYINSSLTPQQKSEVISTLQTS----GH 752 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lT-Gd~~~~a~~ia~~~gi~----------~~~v~~~~~p~~K~~~v~~l~~~----g~ 752 (883)
+-|+++++++.|++.|+++.++| -+.+..|+.+.+.+++. .-.-+.+.-|..|..-.+.+++. ..
T Consensus 46 lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y~ 125 (169)
T PF12689_consen 46 LYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPYE 125 (169)
T ss_dssp --TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH---GG
T ss_pred eCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcCCChh
Confidence 56899999999999999999999 57889999999999997 43445667788999999888864 35
Q ss_pred eEEEEcCCccCHHHHHh
Q 002770 753 HVAMVGDGINDAPSLAL 769 (883)
Q Consensus 753 ~v~~vGDg~ND~~al~~ 769 (883)
.++++=|-.......+.
T Consensus 126 eMlFFDDe~~N~~~v~~ 142 (169)
T PF12689_consen 126 EMLFFDDESRNIEVVSK 142 (169)
T ss_dssp GEEEEES-HHHHHHHHT
T ss_pred HEEEecCchhcceeeEe
Confidence 68888886555555544
No 188
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=81.81 E-value=3.2 Score=44.77 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=46.8
Q ss_pred CeEEEEEecCceEEEEEEecCC--CC-hhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC
Q 002770 666 KSVVYVGREGEGIIGAIAISDS--LR-HDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIG 727 (883)
Q Consensus 666 ~~~~~~a~~~~~~lG~i~l~D~--lr-~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~ 727 (883)
..++++-.||. ++ .=+.+ +| |++.+++++|+++|++++++|+.....+....+++|+.
T Consensus 126 ~kvIvFDLDgT-Li---~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd 186 (301)
T TIGR01684 126 PHVVVFDLDST-LI---TDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLD 186 (301)
T ss_pred ceEEEEecCCC-Cc---CCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCC
Confidence 34666666775 32 22433 45 99999999999999999999999999999999999996
No 189
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=81.35 E-value=1.4 Score=43.69 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=52.7
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc---eEEEec----Cccch--HHHHHHHhhcCCeEEEE
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE---YINSSL----TPQQK--SEVISTLQTSGHHVAMV 757 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~---~v~~~~----~p~~K--~~~v~~l~~~g~~v~~v 757 (883)
++.|++.++++ ++.++|.-+........+.+|+..- .+.++. .|+.. ....+.+.-....++||
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~v 162 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMV 162 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeE
Confidence 46788888888 3679999999888989999998521 122221 22222 44445554445789999
Q ss_pred cCCccCHHHHHhC
Q 002770 758 GDGINDAPSLALA 770 (883)
Q Consensus 758 GDg~ND~~al~~A 770 (883)
||...|+.+-+.+
T Consensus 163 gD~~~Di~~A~~~ 175 (175)
T TIGR01493 163 AAHQWDLIGARKF 175 (175)
T ss_pred ecChhhHHHHhcC
Confidence 9999999886653
No 190
>PRK13748 putative mercuric reductase; Provisional
Probab=80.76 E-value=4.6 Score=48.41 Aligned_cols=66 Identities=24% Similarity=0.405 Sum_probs=53.1
Q ss_pred EEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcccccc
Q 002770 75 LLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKRRV 150 (883)
Q Consensus 75 ~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~~~ 150 (883)
.+.++||+|++|..+++..+...+++....+++..++..+.+++. ...+.+...+++.||......
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~----------~~~~~i~~~i~~~g~~~~~~~ 68 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG----------TSPDALTAAVAGLGYRATLAD 68 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC----------CCHHHHHHHHHHcCCeeeccC
Confidence 466899999999999999999999999999999999877776542 245666666788898865543
No 191
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=80.40 E-value=9.5 Score=40.92 Aligned_cols=106 Identities=16% Similarity=0.265 Sum_probs=70.6
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHc----CCC--CceEEEecCccchHHHHHHHhhc--C
Q 002770 680 GAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEV----GIG--KEYINSSLTPQQKSEVISTLQTS--G 751 (883)
Q Consensus 680 G~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~----gi~--~~~v~~~~~p~~K~~~v~~l~~~--g 751 (883)
|++.-.+++=|++.++|++|+++|++++++|.....+...+++++ |++ .+.++.. . ......++++ +
T Consensus 17 Gvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS---~--~at~~~l~~~~~~ 91 (269)
T COG0647 17 GVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTS---G--DATADYLAKQKPG 91 (269)
T ss_pred CceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecH---H--HHHHHHHHhhCCC
Confidence 678888999999999999999999999999988777766555554 331 1122211 1 1222333333 3
Q ss_pred CeEEEEcCCccCHHHHHhCCeeEEeecCCccHHHHhhcCEEEeCCC
Q 002770 752 HHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNK 797 (883)
Q Consensus 752 ~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ad~vl~~~~ 797 (883)
.+|.++|. ..+...|+.+++-+.- .... ...|+|+...|
T Consensus 92 ~kv~viG~-~~l~~~l~~~G~~~~~--~~~~----~~~d~Vv~g~d 130 (269)
T COG0647 92 KKVYVIGE-EGLKEELEGAGFELVD--EEEP----ARVDAVVVGLD 130 (269)
T ss_pred CEEEEECC-cchHHHHHhCCcEEec--cCCC----CcccEEEEecC
Confidence 68999995 5677899999987775 2221 12677776533
No 192
>PLN02423 phosphomannomutase
Probab=79.70 E-value=2.7 Score=44.56 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=35.9
Q ss_pred ecCcc--chHHHHHHHhhcCCeEEEEcC----CccCHHHHHh-CCeeEEe
Q 002770 734 SLTPQ--QKSEVISTLQTSGHHVAMVGD----GINDAPSLAL-ADVGIAL 776 (883)
Q Consensus 734 ~~~p~--~K~~~v~~l~~~g~~v~~vGD----g~ND~~al~~-AdvgIa~ 776 (883)
++.|. +|...++.|+ ....|+++|| |.||.+||+. -=.|+++
T Consensus 182 Di~~~gvnKg~al~~L~-~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~ 230 (245)
T PLN02423 182 DVFPQGWDKTYCLQFLE-DFDEIHFFGDKTYEGGNDHEIFESERTIGHTV 230 (245)
T ss_pred EEeeCCCCHHHHHHHhc-CcCeEEEEeccCCCCCCcHHHHhCCCcceEEe
Confidence 44444 7999999999 7789999999 8999999997 5569999
No 193
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=78.51 E-value=11 Score=37.93 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=57.2
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCc---------------HHHHHHHHHHcCCCC-ceEEEecCccc-------h-HHH
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDR---------------EEAVAATAKEVGIGK-EYINSSLTPQQ-------K-SEV 743 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~---------------~~~a~~ia~~~gi~~-~~v~~~~~p~~-------K-~~~ 743 (883)
+.+++.+++..|+++|++++|+|.-. .......-+..|+.- ..++|--.|++ | .-+
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~ 111 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGML 111 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHH
Confidence 57899999999999999999999521 111233444455321 23444444543 2 333
Q ss_pred HHHHhhcC---CeEEEEcCCccCHHHHHhCCee
Q 002770 744 ISTLQTSG---HHVAMVGDGINDAPSLALADVG 773 (883)
Q Consensus 744 v~~l~~~g---~~v~~vGDg~ND~~al~~Advg 773 (883)
.+.+++.+ ....||||-..|..+-..+++.
T Consensus 112 ~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 112 LSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK 144 (181)
T ss_pred HHHHHHhCCCccceEEecCcHHHHHHHHHCCCC
Confidence 44444433 6789999999999999999876
No 194
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=77.30 E-value=14 Score=26.08 Aligned_cols=41 Identities=34% Similarity=0.652 Sum_probs=33.6
Q ss_pred EecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEec
Q 002770 77 DVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLR 117 (883)
Q Consensus 77 ~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~ 117 (883)
.+.++.|..|...++..+...+++.....++......+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYD 43 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEEC
Confidence 46899999999999999989999887777877776666554
No 195
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=76.59 E-value=7.3 Score=43.32 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=34.9
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHc-C
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEV-G 725 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~-g 725 (883)
.|++.+++++|+++|+++.++|+-+...+..+.+.+ |
T Consensus 186 ~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 186 DPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred chhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 679999999999999999999999999999999996 6
No 196
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=76.37 E-value=8.3 Score=36.35 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=29.2
Q ss_pred CCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHH
Q 002770 686 DSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVA 718 (883)
Q Consensus 686 D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~ 718 (883)
+++.+++.+++++|++.|++++++||++.....
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 568899999999999999999999999887543
No 197
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=75.83 E-value=4.8 Score=33.94 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCeEEEEcCC-ccCHHHHHhCCe-eEEeecCCcc-HHH---HhhcCEEEe
Q 002770 741 SEVISTLQTSGHHVAMVGDG-INDAPSLALADV-GIALQIEAQE-NAA---STAASIILL 794 (883)
Q Consensus 741 ~~~v~~l~~~g~~v~~vGDg-~ND~~al~~Adv-gIa~~~~~~~-~~a---~~~ad~vl~ 794 (883)
..+.+.+.-....++||||. ..|+.+-+.+++ +|.+..+... +.. ...+|+|+.
T Consensus 11 ~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~ 70 (75)
T PF13242_consen 11 EQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVD 70 (75)
T ss_dssp HHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEES
T ss_pred HHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEEC
Confidence 34445554445689999999 999999999996 5555333222 222 257888873
No 198
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=75.20 E-value=11 Score=39.45 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=23.9
Q ss_pred CCChhHHHHHHHHHHC-CCEEEEEcCCcHHHHHHHHHHcCC
Q 002770 687 SLRHDAEHTVRSLQQK-GIKTLLLSGDREEAVAATAKEVGI 726 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~-Gi~v~~lTGd~~~~a~~ia~~~gi 726 (883)
.+.+++.+++++|.+. +..|+++||+..........--+|
T Consensus 19 ~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~~~~~i 59 (235)
T PF02358_consen 19 VPPPELRELLRALAADPNNTVAIVSGRSLDDLERFGGIPNI 59 (235)
T ss_dssp ---HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-S-SS-
T ss_pred CCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhcCCCCc
Confidence 4568899999999766 447999999999986555444343
No 199
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=75.13 E-value=7.4 Score=38.30 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=61.9
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcHH----HHHHHHHHcCCCC--ceEEEecCcc-chHHHHHHHhhcCCeEEEEcCC
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDREE----AVAATAKEVGIGK--EYINSSLTPQ-QKSEVISTLQTSGHHVAMVGDG 760 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~~----~a~~ia~~~gi~~--~~v~~~~~p~-~K~~~v~~l~~~g~~v~~vGDg 760 (883)
+++-+++.|..=++.|=+++.+||+... ++..+|+...|.. ...|+.-.|. .+..-...+|+++. -..-||.
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~~qy~Kt~~i~~~~~-~IhYGDS 193 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKPKPGQYTKTQWIQDKNI-RIHYGDS 193 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCCCcccccccHHHHhcCc-eEEecCC
Confidence 4666788898889999999999999765 4556677777742 1345544441 22233455666664 4688999
Q ss_pred ccCHHHHHhCCe-eEEe
Q 002770 761 INDAPSLALADV-GIAL 776 (883)
Q Consensus 761 ~ND~~al~~Adv-gIa~ 776 (883)
.||+.|-+.|++ ||-+
T Consensus 194 D~Di~AAkeaG~RgIRi 210 (237)
T COG3700 194 DNDITAAKEAGARGIRI 210 (237)
T ss_pred chhhhHHHhcCccceeE
Confidence 999999999986 6655
No 200
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=75.02 E-value=11 Score=39.61 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=68.8
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--eEEEec-----------------CccchHH-HH--
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE--YINSSL-----------------TPQQKSE-VI-- 744 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~--~v~~~~-----------------~p~~K~~-~v-- 744 (883)
.+|+++.+.++.|++.+|.+.+.|+.=......+-++.|.-.+ .+.++. -+-.|-. .+
T Consensus 90 ~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l~~ 169 (246)
T PF05822_consen 90 MLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESALED 169 (246)
T ss_dssp -B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHHTT
T ss_pred hhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccccC
Confidence 4699999999999999999999999988888888888876322 333321 0112322 11
Q ss_pred ----HHHhhcCCeEEEEcCCccCHHHHHhC-C----eeEEeecCCc---cHHHHhhcCEEEeCCChhhHHHHH
Q 002770 745 ----STLQTSGHHVAMVGDGINDAPSLALA-D----VGIALQIEAQ---ENAASTAASIILLGNKLSQVVDAL 805 (883)
Q Consensus 745 ----~~l~~~g~~v~~vGDg~ND~~al~~A-d----vgIa~~~~~~---~~~a~~~ad~vl~~~~~~~l~~~i 805 (883)
+.++. ...|+..||...|+.|-.-. + +-|+.-..+- -+.-+++-|+|+.+|.-..++..|
T Consensus 170 ~~~~~~~~~-R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv~D~tm~v~~~i 241 (246)
T PF05822_consen 170 SPYFKQLKK-RTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLVDDQTMDVPNAI 241 (246)
T ss_dssp HHHHHCTTT---EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEET--B-HHHHHH
T ss_pred chHHHHhcc-CCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEECCCCchHHHHH
Confidence 22222 35799999999999997655 2 2333321221 224456789999988755555443
No 201
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=72.63 E-value=10 Score=41.05 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=44.8
Q ss_pred eEEEEEecCceEEEEEEecCCC--C-hhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC
Q 002770 667 SVVYVGREGEGIIGAIAISDSL--R-HDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIG 727 (883)
Q Consensus 667 ~~~~~a~~~~~~lG~i~l~D~l--r-~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~ 727 (883)
.++++-.||. + +.=++++ | |++.+++++|+++|+++.++|+.+...+....+.+|+.
T Consensus 129 ~~i~~D~D~T-L---~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~ 188 (303)
T PHA03398 129 HVIVFDLDST-L---ITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLE 188 (303)
T ss_pred cEEEEecCCC-c---cCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCC
Confidence 3555555665 3 2234444 4 99999999999999999999988888889999999995
No 202
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=71.62 E-value=7.3 Score=38.78 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=42.9
Q ss_pred hhhHHHHHHhhccCCCceEEEEecCCCe-------------------EEEEecccchhhhhhhhcCCHHHHHHHHHhc
Q 002770 84 GGCVARVKSVLTADDRVDSVAVNMLTET-------------------AAIKLRTEAVEESEEVVNNVAESLGKRLMEC 142 (883)
Q Consensus 84 ~~C~~~Ie~~l~~~~gV~~~~v~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 142 (883)
++|=|-+|..+.+++||.++.+=+..+. +.|.|||.. ++.++|.+...+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~---------isy~~Ll~~f~~~ 78 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAV---------ISYRELLELFFQI 78 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCc---------CCHHHHHHHHHHh
Confidence 5899999999999999999999777765 778999998 8999998876543
No 203
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=70.36 E-value=20 Score=37.63 Aligned_cols=87 Identities=23% Similarity=0.286 Sum_probs=54.3
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCEEEEEc---CCcHHHHHHHHHH-cCCC--CceEEEecCccchHHHHHHHhh--cC
Q 002770 680 GAIAISDSLRHDAEHTVRSLQQKGIKTLLLS---GDREEAVAATAKE-VGIG--KEYINSSLTPQQKSEVISTLQT--SG 751 (883)
Q Consensus 680 G~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lT---Gd~~~~a~~ia~~-~gi~--~~~v~~~~~p~~K~~~v~~l~~--~g 751 (883)
|++.-.+.+=+++.++|+.++++|++++++| |.+.........+ .|++ .+.++... ....+.|++ .+
T Consensus 7 GvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~-----~~~~~~l~~~~~~ 81 (236)
T TIGR01460 7 GVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSG-----SVTKDLLRQRFEG 81 (236)
T ss_pred CccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHH-----HHHHHHHHHhCCC
Confidence 4445556677799999999999999999998 6666655544444 6763 11222111 112233332 35
Q ss_pred CeEEEEcCCccCHHHHHhCCe
Q 002770 752 HHVAMVGDGINDAPSLALADV 772 (883)
Q Consensus 752 ~~v~~vGDg~ND~~al~~Adv 772 (883)
..|.++|.. .....++..++
T Consensus 82 ~~v~v~G~~-~~~~~l~~~g~ 101 (236)
T TIGR01460 82 EKVYVIGVG-ELRESLEGLGF 101 (236)
T ss_pred CEEEEECCH-HHHHHHHHcCC
Confidence 679999974 45566666554
No 204
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=70.28 E-value=16 Score=36.60 Aligned_cols=126 Identities=16% Similarity=0.171 Sum_probs=79.4
Q ss_pred CCChhHHHHHHHH-HHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCC--ccC
Q 002770 687 SLRHDAEHTVRSL-QQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDG--IND 763 (883)
Q Consensus 687 ~lr~~~~~~i~~L-~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg--~ND 763 (883)
..-+++.+..+++ .+.|.++++..|. +|..+.+.++++ .+.-..+..|=.+.+...++.+.+++++|.. .+|
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~---ta~~lr~~~~iP--VV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~ 91 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG---TAELLRKHVSIP--VVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPG 91 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH---HHHHHHCC-SS---EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCC
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH---HHHHHHHhCCCC--EEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHH
Confidence 3346777888888 7899999888765 666777777776 6777777778777888777778888887764 222
Q ss_pred HHHH--------------------------HhCCeeEEeecCCccHHHHh-hcCEEEeCCChhhHHHHHHHHHHHHHHHH
Q 002770 764 APSL--------------------------ALADVGIALQIEAQENAAST-AASIILLGNKLSQVVDALDLAKATMAKVY 816 (883)
Q Consensus 764 ~~al--------------------------~~AdvgIa~~~~~~~~~a~~-~ad~vl~~~~~~~l~~~i~~~r~~~~~i~ 816 (883)
...+ +..++.+-+|++...+.|++ .-..++...+...+..+++.++++.+..+
T Consensus 92 ~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~sg~esi~~Al~eA~~i~~~~~ 171 (176)
T PF06506_consen 92 LESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIESGEESIRRALEEALRIARARR 171 (176)
T ss_dssp HHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHHHHHHH
Confidence 2222 23356666643333344433 34567778889999999999999988776
Q ss_pred H
Q 002770 817 Q 817 (883)
Q Consensus 817 ~ 817 (883)
+
T Consensus 172 ~ 172 (176)
T PF06506_consen 172 R 172 (176)
T ss_dssp H
T ss_pred H
Confidence 5
No 205
>PF13246 Hydrolase_like2: Putative hydrolase of sodium-potassium ATPase alpha subunit
Probab=67.01 E-value=9.3 Score=33.71 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=36.0
Q ss_pred ccCChHHHHHHHHHHhcCCC---------CCCCcCcccccCceEEEEE--C-C-EE-EEecCHHHHHHHhhc
Q 002770 580 TATHPIAKAIVNKAESLNLT---------SPITRGQLAEPGFGILGEV--D-G-RL-VAVGTLEWVYERFQK 637 (883)
Q Consensus 580 ~s~hPi~~Ai~~~~~~~~~~---------~~~~~~~~~~~g~g~~~~~--~-g-~~-~~~Gs~~~i~~~~~~ 637 (883)
....|.+.|++.++...|.. .+....+.....+..+.++ + + .. ++||+++.++++|..
T Consensus 19 ~~G~ptE~ALl~~~~~~g~~~~~~~~~~~~~~~~~~pF~S~rK~msvv~~~~~~~~~~~KGA~e~il~~Ct~ 90 (91)
T PF13246_consen 19 IIGDPTEKALLRFAKKLGVGIDIKEIRSKYKIVAEIPFDSERKRMSVVVRNDGKYILYVKGAPEVILDRCTH 90 (91)
T ss_pred ccCCcCHHHHHHHHHHcCCCCcHHHHHhhcceeEEEccCcccceeEEEEeCCCEEEEEcCCChHHHHHhcCC
Confidence 45679999999999887543 1122222333333333332 2 3 33 789999999999863
No 206
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=67.00 E-value=1.1e+02 Score=28.63 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=60.7
Q ss_pred EecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCcc
Q 002770 683 AISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGIN 762 (883)
Q Consensus 683 ~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~N 762 (883)
.+-+++.++..+.+++ |+.+.+.............+... .+.....+.--.++++.+. .-+-|...|-|.|
T Consensus 2 li~~~~~~~~~~~l~~----~~~v~~~~~~~~~~~~~~l~~~d----~ii~~~~~~~~~~~l~~~~-~Lk~I~~~~~G~d 72 (133)
T PF00389_consen 2 LITDPLPDEEIERLEE----GFEVEFCDSPSEEELAERLKDAD----AIIVGSGTPLTAEVLEAAP-NLKLISTAGAGVD 72 (133)
T ss_dssp EESSS-SHHHHHHHHH----TSEEEEESSSSHHHHHHHHTTES----EEEESTTSTBSHHHHHHHT-T-SEEEESSSSCT
T ss_pred EEeccCCHHHHHHHHC----CceEEEeCCCCHHHHHHHhCCCe----EEEEcCCCCcCHHHHhccc-eeEEEEEcccccC
Confidence 4566777776666655 88888888555554444444432 4555555533456677773 3357888999988
Q ss_pred --CHHHHHhCCeeEEeecCCccHHHHhhc
Q 002770 763 --DAPSLALADVGIALQIEAQENAASTAA 789 (883)
Q Consensus 763 --D~~al~~AdvgIa~~~~~~~~~a~~~a 789 (883)
|.++++.-+|-++-..+..++...+.+
T Consensus 73 ~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 73 NIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred cccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 789999999988875444444444444
No 207
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=65.24 E-value=15 Score=30.46 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=40.8
Q ss_pred EEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCccc
Q 002770 75 LLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAK 147 (883)
Q Consensus 75 ~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~ 147 (883)
++.+.|+.|+...-.+.+++.+++.=+ ...|..|... ..+++.+..+..||+..
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G~---------~l~v~~d~~~----------~~~di~~~~~~~g~~~~ 55 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPGE---------VLEVLVDDPA----------AVEDIPRWCEENGYEVV 55 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTT----------HHHHHHHHHHHHTEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCCC---------EEEEEECCcc----------HHHHHHHHHHHCCCEEE
Confidence 688999999999999999999974433 3344555543 57889999999999843
No 208
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=64.95 E-value=5.1 Score=42.32 Aligned_cols=84 Identities=12% Similarity=0.147 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC----------CceE-EEecCccchHHHHHHHhhc-CCeEEE
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIG----------KEYI-NSSLTPQQKSEVISTLQTS-GHHVAM 756 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~----------~~~v-~~~~~p~~K~~~v~~l~~~-g~~v~~ 756 (883)
-++..++++.|++.|++. ++|..+...+.......|.. .+.+ ...-.|+-=....+.+... ...++|
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 478899999999899997 66765444332222222211 0111 1112222123344444322 347999
Q ss_pred EcCC-ccCHHHHHhCCee
Q 002770 757 VGDG-INDAPSLALADVG 773 (883)
Q Consensus 757 vGDg-~ND~~al~~Advg 773 (883)
|||. .+|..+-+.|++-
T Consensus 219 vGD~~~~Di~~a~~~G~~ 236 (242)
T TIGR01459 219 VGDSFYTDILGANRLGID 236 (242)
T ss_pred ECCCcHHHHHHHHHCCCe
Confidence 9999 5999999998874
No 209
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=62.25 E-value=14 Score=36.13 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=40.6
Q ss_pred hhhHHHHHHhhccCCCceEEEEecCCCe--------------EEEEecccchhhhhhhhcCCHHHHHHHHHh
Q 002770 84 GGCVARVKSVLTADDRVDSVAVNMLTET--------------AAIKLRTEAVEESEEVVNNVAESLGKRLME 141 (883)
Q Consensus 84 ~~C~~~Ie~~l~~~~gV~~~~v~~~~~~--------------~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~ 141 (883)
++|=|-+|..+.+++||.++.+=+..+. +.|.|||.. ++.++|.+....
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~---------isy~~LL~~f~~ 70 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRM---------VSITDLMGYLFE 70 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCc---------CCHHHHHHHHHH
Confidence 5899999999999999999998665432 678899988 899999887644
No 210
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=62.12 E-value=26 Score=38.78 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=57.3
Q ss_pred EEEEecCCCChhHHHHHHHHHHC----CCEEEEEcCCc---HHH-HHHHHHHcCCCCc--eEEEecCccchHHHHHHHhh
Q 002770 680 GAIAISDSLRHDAEHTVRSLQQK----GIKTLLLSGDR---EEA-VAATAKEVGIGKE--YINSSLTPQQKSEVISTLQT 749 (883)
Q Consensus 680 G~i~l~D~lr~~~~~~i~~L~~~----Gi~v~~lTGd~---~~~-a~~ia~~~gi~~~--~v~~~~~p~~K~~~v~~l~~ 749 (883)
|++.-.+++-+++.++++.|++. |+++..+|-.. ... +..+.+++|++-+ +++.. ...+...+++
T Consensus 9 GvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s-----~~~~~~ll~~ 83 (321)
T TIGR01456 9 GVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQS-----HSPYKSLVNK 83 (321)
T ss_pred CceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhh-----hHHHHHHHHH
Confidence 66778889999999999999998 99999999554 343 5666688888421 22211 1222222333
Q ss_pred cCCeEEEEcCCccCHHHHHhCCee
Q 002770 750 SGHHVAMVGDGINDAPSLALADVG 773 (883)
Q Consensus 750 ~g~~v~~vGDg~ND~~al~~Advg 773 (883)
.+..+.++|.+. -...++.+++-
T Consensus 84 ~~~~v~viG~~~-~~~~l~~~G~~ 106 (321)
T TIGR01456 84 YEKRILAVGTGS-VRGVAEGYGFQ 106 (321)
T ss_pred cCCceEEEeChH-HHHHHHHcCCc
Confidence 334689999864 45566655543
No 211
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=61.00 E-value=15 Score=39.80 Aligned_cols=86 Identities=10% Similarity=0.105 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCCcHHHH----------HH----HHHHcCCCCceEEEecCccchHHHHHHHhhcCCeE
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGDREEAV----------AA----TAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHV 754 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd~~~~a----------~~----ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v 754 (883)
-+++.++++.|++.|+ ..++|....... .. +....|-. ......-+|+-=..+++.+....+.+
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~-~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQ-PLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCc-eeccCCCCHHHHHHHHHHhCCChhhE
Confidence 5688999999998898 566765432111 01 11111211 01111222322234445554456789
Q ss_pred EEEcCCc-cCHHHHHhCCe-eEEe
Q 002770 755 AMVGDGI-NDAPSLALADV-GIAL 776 (883)
Q Consensus 755 ~~vGDg~-ND~~al~~Adv-gIa~ 776 (883)
+||||.. .|+.+-+.|++ +|.+
T Consensus 223 lmIGD~~~tDI~~A~~aGi~si~V 246 (279)
T TIGR01452 223 LMVGDRLETDILFGHRCGMTTVLV 246 (279)
T ss_pred EEECCChHHHHHHHHHcCCcEEEE
Confidence 9999995 99999999986 3444
No 212
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=60.77 E-value=62 Score=41.25 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccceE-----------EEEcCCCCCCCCCccccCCCeEEEeeCCCcCCCCEEEE
Q 002770 288 VLLGRSLEERARIRASSDMNELLSLVSTQSR-----------LVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLV 356 (883)
Q Consensus 288 ~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~-----------v~~~~~~~~~~~~~~~~~dg~~~~V~~~~l~~GDiV~v 356 (883)
..+-.+++++...|+.++++++......-.+ .+. . .| +.-|....+...|.+|-|.+++
T Consensus 124 ~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~-~------~e---Lv~GDiV~l~~Gd~IPaDg~li 193 (903)
T PRK15122 124 SGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIP-M------RE---LVPGDIVHLSAGDMIPADVRLI 193 (903)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEE-H------HH---CCCCCEEEECCCCEEeeeEEEE
Confidence 4444566666666788888888655432221 121 1 11 1245678888899999998888
Q ss_pred CCCCeeeeeEEEEeeceE
Q 002770 357 LPGETIPVDGRVLAGRSV 374 (883)
Q Consensus 357 ~~Ge~IPaDg~vl~G~~~ 374 (883)
+. +-+=+|=-.+.|++.
T Consensus 194 ~g-~~l~VDES~LTGES~ 210 (903)
T PRK15122 194 ES-RDLFISQAVLTGEAL 210 (903)
T ss_pred Ec-CceEEEccccCCCCc
Confidence 73 335566666666653
No 213
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=59.47 E-value=17 Score=35.82 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCC---c-----------HHHHHHHHHHcCCCCceEEEecCcc--ch--HHHHHHHhhc
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGD---R-----------EEAVAATAKEVGIGKEYINSSLTPQ--QK--SEVISTLQTS 750 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd---~-----------~~~a~~ia~~~gi~~~~v~~~~~p~--~K--~~~v~~l~~~ 750 (883)
.+++.++|++|.+.|++++|+|-- . ......+.+.+|++- .+++..... .| .-+...+.+.
T Consensus 31 ~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~-~~~~a~~~d~~RKP~~GM~~~~~~~ 109 (159)
T PF08645_consen 31 PPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPI-QVYAAPHKDPCRKPNPGMWEFALKD 109 (159)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-E-EEEECGCSSTTSTTSSHHHHHHCCC
T ss_pred chhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCce-EEEecCCCCCCCCCchhHHHHHHHh
Confidence 457999999999999999999832 1 133467888899873 344432211 12 1222222221
Q ss_pred --------CCeEEEEcCCccC
Q 002770 751 --------GHHVAMVGDGIND 763 (883)
Q Consensus 751 --------g~~v~~vGDg~ND 763 (883)
-....||||..+|
T Consensus 110 ~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 110 YNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp TSTT--S-CCC-EEEESSCHC
T ss_pred ccccccccccceEEEeccCCC
Confidence 2568999998777
No 214
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=58.46 E-value=1.3e+02 Score=32.27 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=49.4
Q ss_pred cCCCCCeEEEEEecCceEEEEEEe--cCCCChhHHHHHHHHHHC-CCEEEEEcCCcHHHHHHHHHHcCC
Q 002770 661 PSNYSKSVVYVGREGEGIIGAIAI--SDSLRHDAEHTVRSLQQK-GIKTLLLSGDREEAVAATAKEVGI 726 (883)
Q Consensus 661 ~~~~g~~~~~~a~~~~~~lG~i~l--~D~lr~~~~~~i~~L~~~-Gi~v~~lTGd~~~~a~~ia~~~gi 726 (883)
......+.+++-+||. +..++-. ...+.++..++++.|... ..-++++||+..........-.||
T Consensus 13 ~~~a~~~~~~lDyDGT-l~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i 80 (266)
T COG1877 13 YLNARKRLLFLDYDGT-LTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGI 80 (266)
T ss_pred cccccceEEEEecccc-ccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCc
Confidence 4456677888888885 6655544 445677889999999877 446999999999999888775554
No 215
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=58.35 E-value=45 Score=34.86 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=53.6
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcHHH----HHHHHHHcCCCCc---eEEEecCccchHHHHHHHhhcCCeEEEEcCC
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDREEA----VAATAKEVGIGKE---YINSSLTPQQKSEVISTLQTSGHHVAMVGDG 760 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~----a~~ia~~~gi~~~---~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg 760 (883)
.=||+.|-++..-+.|.++..+|.+.... ...-.++.|++.. .+.--=.-..|..--+..++....|+.|||.
T Consensus 123 ~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~k~Ke~R~~~v~k~~~iVm~vGDN 202 (274)
T COG2503 123 AVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDKKSKEVRRQAVEKDYKIVMLVGDN 202 (274)
T ss_pred cCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCCCcHHHHHHHHhhccceeeEecCc
Confidence 35789999999999999999999887766 3344556677521 2221111122333333444455689999999
Q ss_pred ccCHHHHHhC
Q 002770 761 INDAPSLALA 770 (883)
Q Consensus 761 ~ND~~al~~A 770 (883)
.+|-......
T Consensus 203 l~DF~d~~~k 212 (274)
T COG2503 203 LDDFGDNAYK 212 (274)
T ss_pred hhhhcchhhh
Confidence 9997665443
No 216
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=57.33 E-value=15 Score=37.07 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=41.8
Q ss_pred hhhHHHHHHhhccCCCceEEEEecCCCe-------------------EEEEecccchhhhhhhhcCCHHHHHHHHHh
Q 002770 84 GGCVARVKSVLTADDRVDSVAVNMLTET-------------------AAIKLRTEAVEESEEVVNNVAESLGKRLME 141 (883)
Q Consensus 84 ~~C~~~Ie~~l~~~~gV~~~~v~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~ 141 (883)
++|=|-+|..+.+++||.++.+=+..+. +.|.|||.. ++.++|.+...+
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~---------iSy~~LL~~Ff~ 82 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQ---------VSYENLLQIFFS 82 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCc---------CCHHHHHHHHHH
Confidence 5789999999999999999999777664 678899988 899999887654
No 217
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=57.15 E-value=15 Score=37.71 Aligned_cols=49 Identities=18% Similarity=0.095 Sum_probs=41.2
Q ss_pred hhhHHHHHHhhccCCCceEEEEecCCC-------------------eEEEEecccchhhhhhhhcCCHHHHHHHHHh
Q 002770 84 GGCVARVKSVLTADDRVDSVAVNMLTE-------------------TAAIKLRTEAVEESEEVVNNVAESLGKRLME 141 (883)
Q Consensus 84 ~~C~~~Ie~~l~~~~gV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~ 141 (883)
++|=|-+|..+.+++||.++.|=+..+ .+.|.|||.. ++.++|.+....
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~---------ISy~~LL~~Ff~ 119 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAV---------ISYEQLLQVFWE 119 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCcc---------CCHHHHHHHHHH
Confidence 589999999999999999999987743 2678899988 899999877643
No 218
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=55.83 E-value=29 Score=38.57 Aligned_cols=95 Identities=27% Similarity=0.408 Sum_probs=64.9
Q ss_pred eEEEEEecCceEEEEEEecCCCChhHHHHHHHHHH---CCCEEEEEc-CCcHHHHHHHHHHcCCCCceEEEecCccchHH
Q 002770 667 SVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQ---KGIKTLLLS-GDREEAVAATAKEVGIGKEYINSSLTPQQKSE 742 (883)
Q Consensus 667 ~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~---~Gi~v~~lT-Gd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~ 742 (883)
.-+++-.+++..+|.+=++ ++-..+.+|.. ..-.|+-.| |.+.+-+..-|+.+||+...+....+|++|.+
T Consensus 40 ~~v~lK~E~lQ~~gSFK~R-----GA~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~ 114 (347)
T COG1171 40 AEIYLKRENLQPVGSFKIR-----GAYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVD 114 (347)
T ss_pred ceEEEeeccCcccccchhh-----hHHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHH
Confidence 3456666666566655433 24444555542 222355555 77777788888999999888888999999988
Q ss_pred HHHHHhhcCCeEEEEcCCccCHHHHHh
Q 002770 743 VISTLQTSGHHVAMVGDGINDAPSLAL 769 (883)
Q Consensus 743 ~v~~l~~~g~~v~~vGDg~ND~~al~~ 769 (883)
-++.+ |..|...||..+|+...+.
T Consensus 115 a~r~~---GaeVil~g~~~dda~~~a~ 138 (347)
T COG1171 115 ATRGY---GAEVILHGDNFDDAYAAAE 138 (347)
T ss_pred HHHhc---CCEEEEECCCHHHHHHHHH
Confidence 87765 6678888888888766543
No 219
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=53.61 E-value=50 Score=30.47 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=37.4
Q ss_pred CCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCC
Q 002770 664 YSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGI 726 (883)
Q Consensus 664 ~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi 726 (883)
.+..++.++..|. .+++.++++.+++.|++++.+|++.+ ....+.+.|+
T Consensus 43 ~~dl~I~iS~SG~------------t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~~ 91 (119)
T cd05017 43 RKTLVIAVSYSGN------------TEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHGV 91 (119)
T ss_pred CCCEEEEEECCCC------------CHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcCC
Confidence 3445566666666 78999999999999999999998774 4456666665
No 220
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=52.66 E-value=24 Score=34.34 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=39.8
Q ss_pred hhhHHHHHHhhccCCCceEEEEecCCCe-------------------EEEEecccchhhhhhhhcCCHHHHHHHHHh
Q 002770 84 GGCVARVKSVLTADDRVDSVAVNMLTET-------------------AAIKLRTEAVEESEEVVNNVAESLGKRLME 141 (883)
Q Consensus 84 ~~C~~~Ie~~l~~~~gV~~~~v~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~ 141 (883)
.+|=|-+|....+++||.++.+=+..+. +.|.|||.. ++.++|.+...+
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~---------is~~~Ll~~f~~ 74 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKV---------ISYEELLDVFWE 74 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCc---------CcHHHHHHHHHH
Confidence 5799999999999999999988555442 567899988 899999887644
No 221
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=52.32 E-value=1.2e+02 Score=33.07 Aligned_cols=92 Identities=26% Similarity=0.450 Sum_probs=57.0
Q ss_pred CCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCcc-chHH
Q 002770 664 YSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQ-QKSE 742 (883)
Q Consensus 664 ~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~-~K~~ 742 (883)
.|...+++.-++. -+| + .+..+++-+-|-+. +..+++-+....+...+|+..+++ |.-.++.+ +-.+
T Consensus 69 lGg~~~~l~~~~~-Qlg----r---~Esi~DTArVLsr~-~D~I~~R~~~~~~ve~lA~~s~VP---ViNgLtD~~HP~Q 136 (310)
T COG0078 69 LGGHAIYLGPGDS-QLG----R---GESIKDTARVLSRM-VDAIMIRGFSHETLEELAKYSGVP---VINGLTDEFHPCQ 136 (310)
T ss_pred cCCCeEEeCCCcc-ccC----C---CCcHHHHHHHHHhh-hheEEEecccHHHHHHHHHhCCCc---eEcccccccCcHH
Confidence 5666677665543 222 1 23344444555444 678999999999999999999996 55455433 2222
Q ss_pred HHH---HHhh-----cCCeEEEEcCCccCHHHH
Q 002770 743 VIS---TLQT-----SGHHVAMVGDGINDAPSL 767 (883)
Q Consensus 743 ~v~---~l~~-----~g~~v~~vGDg~ND~~al 767 (883)
++. .+++ +|.+++++|||.|=+..|
T Consensus 137 ~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl 169 (310)
T COG0078 137 ALADLMTIKEHFGSLKGLKLAYVGDGNNVANSL 169 (310)
T ss_pred HHHHHHHHHHhcCcccCcEEEEEcCcchHHHHH
Confidence 222 2222 468999999995554433
No 222
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=49.04 E-value=32 Score=33.71 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=40.9
Q ss_pred hhhHHHHHHhhccCCCceEEEEecCCC-------------------eEEEEecccchhhhhhhhcCCHHHHHHHHHhc
Q 002770 84 GGCVARVKSVLTADDRVDSVAVNMLTE-------------------TAAIKLRTEAVEESEEVVNNVAESLGKRLMEC 142 (883)
Q Consensus 84 ~~C~~~Ie~~l~~~~gV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 142 (883)
++|=|.+|..+.+++||.++.+=+..+ .+.|.|||.. ++.++|.+.....
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~---------is~~~Ll~~f~~~ 75 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSV---------ISYEELLDVFFRI 75 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTT---------S-HHHHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCc---------ccHHHHHHHHHHh
Confidence 589999999999999999999977665 2568899988 8899988876544
No 223
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=48.39 E-value=63 Score=34.96 Aligned_cols=48 Identities=10% Similarity=0.272 Sum_probs=41.2
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHH---cCCC
Q 002770 680 GAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKE---VGIG 727 (883)
Q Consensus 680 G~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~---~gi~ 727 (883)
|++...+..-|++.++++.|+++|.+++++|.....+-...+++ +|+.
T Consensus 31 GVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 31 GVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred cceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 67788999999999999999999999999998888887777664 5664
No 224
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=47.55 E-value=40 Score=35.44 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCc--eEE-----EecCccch--HHHHHHHhhcCCeEEEEcCC
Q 002770 690 HDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE--YIN-----SSLTPQQK--SEVISTLQTSGHHVAMVGDG 760 (883)
Q Consensus 690 ~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~--~v~-----~~~~p~~K--~~~v~~l~~~g~~v~~vGDg 760 (883)
++..+++++||+.|..+.++|-=... ...+-..+|+... .+. .-..|+-+ ...++.+..+...+++|||.
T Consensus 116 ~~~~~~lq~lR~~g~~l~iisN~d~r-~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~ 194 (237)
T KOG3085|consen 116 DGMQELLQKLRKKGTILGIISNFDDR-LRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHIGDL 194 (237)
T ss_pred cHHHHHHHHHHhCCeEEEEecCCcHH-HHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEecCc
Confidence 44559999999999888888833222 2366677777410 111 11345544 45566676677899999995
Q ss_pred -ccCHHHHHhCCe-eEEeecCCccHHHHh
Q 002770 761 -INDAPSLALADV-GIALQIEAQENAAST 787 (883)
Q Consensus 761 -~ND~~al~~Adv-gIa~~~~~~~~~a~~ 787 (883)
.||...-+.++. ++=+ .+.....++
T Consensus 195 l~nD~~gA~~~G~~ailv--~~~~~~~~~ 221 (237)
T KOG3085|consen 195 LENDYEGARNLGWHAILV--DNSITALKE 221 (237)
T ss_pred cccccHhHHHcCCEEEEE--ccccchhhh
Confidence 899999999885 5555 444433333
No 225
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=47.26 E-value=77 Score=31.06 Aligned_cols=71 Identities=28% Similarity=0.360 Sum_probs=44.6
Q ss_pred HHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEe--cCccch---HHHHHHHhhcCCeEEE-EcCCccCHHH
Q 002770 694 HTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSS--LTPQQK---SEVISTLQTSGHHVAM-VGDGINDAPS 766 (883)
Q Consensus 694 ~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~--~~p~~K---~~~v~~l~~~g~~v~~-vGDg~ND~~a 766 (883)
+.=++|++.|+..+++.||.......++++.|+. .++++ ..|+.+ .++.+.+++.|-.+-. -++..-+...
T Consensus 57 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~--~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~L~~~~~ 133 (165)
T PF00875_consen 57 DLQESLRKLGIPLLVLRGDPEEVLPELAKEYGAT--AVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDDHTLVPPDD 133 (165)
T ss_dssp HHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTES--EEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--SSSS-HHH
T ss_pred HHHHHHHhcCcceEEEecchHHHHHHHHHhcCcC--eeEeccccCHHHHHHHHHHHHHHHhcceEEEEECCcEEEeccc
Confidence 3345667889999999999999999999999997 56655 344443 3444556665654433 3333444333
No 226
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=46.09 E-value=32 Score=34.03 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=41.8
Q ss_pred hhhHHHHHHhhccCCCceEEEEecCCCe-------------------EEEEecccchhhhhhhhcCCHHHHHHHHHhc
Q 002770 84 GGCVARVKSVLTADDRVDSVAVNMLTET-------------------AAIKLRTEAVEESEEVVNNVAESLGKRLMEC 142 (883)
Q Consensus 84 ~~C~~~Ie~~l~~~~gV~~~~v~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 142 (883)
.+|=|-+|+...++|||.++.+=++.+. +.|.|||.. ++.++|.+..-+.
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~---------isy~~LL~~ff~i 81 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKV---------ISYEELLEVFFEI 81 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCcc---------ccHHHHHHHHhee
Confidence 5899999999999999999998666554 567899988 8999998887554
No 227
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=44.78 E-value=92 Score=32.99 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=72.2
Q ss_pred HHHHHHHHHCCCEEEEEcCCcHHHHHHHHH----HcCCCCceEEE---ecCccchHHHHHHHhhcCCeEEEEcCCccCHH
Q 002770 693 EHTVRSLQQKGIKTLLLSGDREEAVAATAK----EVGIGKEYINS---SLTPQQKSEVISTLQTSGHHVAMVGDGINDAP 765 (883)
Q Consensus 693 ~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~----~~gi~~~~v~~---~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~ 765 (883)
.+.++.+.+.|.++.++ |..+.++...++ +.|+. .+.. =..|++..++++.+.+.+..+++||=|.-=-+
T Consensus 95 ~~ll~~~~~~~~~v~ll-G~~~~v~~~a~~~l~~~y~l~--i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~PkQE 171 (243)
T PRK03692 95 EALMARAGKEGTPVFLV-GGKPEVLAQTEAKLRTQWNVN--IVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGSPKQE 171 (243)
T ss_pred HHHHHHHHhcCCeEEEE-CCCHHHHHHHHHHHHHHhCCE--EEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCCcHHH
Confidence 45566677789999998 555554444443 33553 1111 13467777899999999999999999943222
Q ss_pred -------HHHhCCeeEEeecCCccHH---HHhhcCEEEeCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 002770 766 -------SLALADVGIALQIEAQENA---ASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSW 821 (883)
Q Consensus 766 -------al~~AdvgIa~~~~~~~~~---a~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~ 821 (883)
..-...+.+++ |..-|. ...-|.-....-++..+..++.+=|+..+.+. |-.|
T Consensus 172 ~~~~~~~~~~~~~v~~gv--Gg~fD~~aG~~~RAP~w~~~~gLEWlyRl~~EP~R~~R~~~-~~~F 234 (243)
T PRK03692 172 IFMRDCRLVYPDALYMGV--GGTYDVFTGHVKRAPKIWQNLGLEWLYRLLSQPSRIRRQLR-LLRY 234 (243)
T ss_pred HHHHHHHHhCCCCEEEEe--CeEEEEecCCcCcCcHHHHHhChHHHHHhHhCcHHHHHHHH-HHHH
Confidence 22234566666 322111 01122223344568889999988888544433 4333
No 228
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.42 E-value=81 Score=34.15 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=25.7
Q ss_pred cCCeEEEEcCCccC----HHHHHh--CCeeEEeecCCccH--HHHhhcCEEEeC
Q 002770 750 SGHHVAMVGDGIND----APSLAL--ADVGIALQIEAQEN--AASTAASIILLG 795 (883)
Q Consensus 750 ~g~~v~~vGDg~ND----~~al~~--AdvgIa~~~~~~~~--~a~~~ad~vl~~ 795 (883)
.|+.|+.||.+..= +.+|.. |.|-++- ....+ .....||+++..
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVtich--s~T~~l~~~~~~ADIvI~A 207 (284)
T PRK14170 156 EGKRAVVIGRSNIVGKPVAQLLLNENATVTIAH--SRTKDLPQVAKEADILVVA 207 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC--CCCCCHHHHHhhCCEEEEe
Confidence 48899999998433 234433 4455554 32222 234678888754
No 229
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.21 E-value=1e+02 Score=33.67 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=26.7
Q ss_pred cCCeEEEEcCC-ccCHH---HHHhCCeeEEeecCC--ccHHHHhhcCEEEe
Q 002770 750 SGHHVAMVGDG-INDAP---SLALADVGIALQIEA--QENAASTAASIILL 794 (883)
Q Consensus 750 ~g~~v~~vGDg-~ND~~---al~~AdvgIa~~~~~--~~~~a~~~ad~vl~ 794 (883)
.|..|++||-| .==.| +|..++.-+.+-... ........||+|+.
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIs 208 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVA 208 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEE
Confidence 38899999997 44433 445566655553121 12233456888875
No 230
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.23 E-value=1.4e+02 Score=32.36 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=25.6
Q ss_pred cCCeEEEEcCCccC----HHHHHhCC--eeEEeecCCccH--HHHhhcCEEEeC
Q 002770 750 SGHHVAMVGDGIND----APSLALAD--VGIALQIEAQEN--AASTAASIILLG 795 (883)
Q Consensus 750 ~g~~v~~vGDg~ND----~~al~~Ad--vgIa~~~~~~~~--~a~~~ad~vl~~ 795 (883)
.|+.|+.||.+..= +.+|...+ |-++- ....+ .....||+++..
T Consensus 155 ~Gk~vvViGrS~iVGkPla~lL~~~~atVtich--s~T~~l~~~~~~ADIvI~A 206 (282)
T PRK14169 155 AGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAH--SKTRNLKQLTKEADILVVA 206 (282)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEEC--CCCCCHHHHHhhCCEEEEc
Confidence 47899999998433 33444444 44443 33222 234678888764
No 231
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=41.84 E-value=55 Score=26.77 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=38.5
Q ss_pred EEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCccccc
Q 002770 76 LDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKRR 149 (883)
Q Consensus 76 l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~~ 149 (883)
+.+.|+.|+.-.-..++++ ++..-. .+.|..|... +.+.+.+..++.||+....
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~g~---------~l~v~~d~~~----------s~~~i~~~~~~~G~~~~~~ 55 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEAGG---------EIEVLVDNEV----------AKENVSRFAESRGYEVSVE 55 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCCCC---------EEEEEEcChh----------HHHHHHHHHHHcCCEEEEE
Confidence 5688999999999999999 553222 2333444332 5678888999999998543
No 232
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=41.72 E-value=35 Score=31.69 Aligned_cols=45 Identities=16% Similarity=0.350 Sum_probs=34.1
Q ss_pred CCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHH
Q 002770 664 YSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAAT 720 (883)
Q Consensus 664 ~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~i 720 (883)
.+..++.++..|. .+++.++++.+|++|++++.+|+.+.......
T Consensus 47 ~~d~vi~iS~sG~------------t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ 91 (128)
T cd05014 47 PGDVVIAISNSGE------------TDELLNLLPHLKRRGAPIIAITGNPNSTLAKL 91 (128)
T ss_pred CCCEEEEEeCCCC------------CHHHHHHHHHHHHCCCeEEEEeCCCCCchhhh
Confidence 3445556666665 78899999999999999999998776654443
No 233
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.66 E-value=1.3e+02 Score=32.77 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=32.8
Q ss_pred CccchHHHHHHHh--hcCCeEEEEcCCccC----HHHHHh------CCeeEEeecCCccH--HHHhhcCEEEeC
Q 002770 736 TPQQKSEVISTLQ--TSGHHVAMVGDGIND----APSLAL------ADVGIALQIEAQEN--AASTAASIILLG 795 (883)
Q Consensus 736 ~p~~K~~~v~~l~--~~g~~v~~vGDg~ND----~~al~~------AdvgIa~~~~~~~~--~a~~~ad~vl~~ 795 (883)
+|..=.++++.++ -.|..|+.||.+..= +.+|.. |.|-++. ....+ .....||+++..
T Consensus 140 Tp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~h--s~t~~l~~~~~~ADIVI~A 211 (286)
T PRK14184 140 TPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCH--SRTPDLAEECREADFLFVA 211 (286)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEe--CCchhHHHHHHhCCEEEEe
Confidence 3433334444432 137899999998433 234433 6666666 33332 345678988754
No 234
>PRK11018 hypothetical protein; Provisional
Probab=41.64 E-value=83 Score=26.83 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=43.5
Q ss_pred EEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcccc
Q 002770 73 TVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKR 148 (883)
Q Consensus 73 ~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~ 148 (883)
..++.+.|..|+.-.-..+++|++++.-+ ...|..|... +.+.+....++.||+...
T Consensus 8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~~G~---------~L~V~~d~~~----------a~~di~~~~~~~G~~v~~ 64 (78)
T PRK11018 8 DYRLDMVGEPCPYPAVATLEALPQLKKGE---------ILEVVSDCPQ----------SINNIPLDARNHGYTVLD 64 (78)
T ss_pred CeeEECCCCcCCHHHHHHHHHHHhCCCCC---------EEEEEeCCcc----------HHHHHHHHHHHcCCEEEE
Confidence 36799999999999999999999886332 2344445433 567888889999999753
No 235
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.75 E-value=1e+02 Score=33.67 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=33.8
Q ss_pred cCccchHHHHHHHhh--cCCeEEEEcCCccCH----HHHH------hCCeeEEeecCCcc--HHHHhhcCEEEeC
Q 002770 735 LTPQQKSEVISTLQT--SGHHVAMVGDGINDA----PSLA------LADVGIALQIEAQE--NAASTAASIILLG 795 (883)
Q Consensus 735 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~ND~----~al~------~AdvgIa~~~~~~~--~~a~~~ad~vl~~ 795 (883)
++|..=.++++.+.- .|..|++||.+..=- .+|. .|.|-++. .... ......||+++..
T Consensus 141 cTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~h--s~t~~l~~~~~~ADIvI~A 213 (295)
T PRK14174 141 CTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICH--SATKDIPSYTRQADILIAA 213 (295)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEe--CCchhHHHHHHhCCEEEEe
Confidence 344433444444332 489999999985432 2333 36666666 3332 3345789998864
No 236
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=40.55 E-value=43 Score=36.13 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=40.8
Q ss_pred hhhHHHHHHhhccCCCceEEEEecCCCe-------------------EEEEecccchhhhhhhhcCCHHHHHHHHHh
Q 002770 84 GGCVARVKSVLTADDRVDSVAVNMLTET-------------------AAIKLRTEAVEESEEVVNNVAESLGKRLME 141 (883)
Q Consensus 84 ~~C~~~Ie~~l~~~~gV~~~~v~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~ 141 (883)
.+|=|.+|..+.+++||.++.+=+..++ +.|.|||.. ++.++|.+...+
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~---------isy~~LL~~F~~ 201 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAK---------ISYETLLKVFFE 201 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCcc---------CCHHHHHHHHHh
Confidence 6899999999999999999998666553 678899988 789998877643
No 237
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=40.18 E-value=59 Score=36.46 Aligned_cols=93 Identities=24% Similarity=0.330 Sum_probs=65.2
Q ss_pred eEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCE--EEEEcCCcHH-HHHHHHHHcCCCCceEEEecCccchHHH
Q 002770 667 SVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIK--TLLLSGDREE-AVAATAKEVGIGKEYINSSLTPQQKSEV 743 (883)
Q Consensus 667 ~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~--v~~lTGd~~~-~a~~ia~~~gi~~~~v~~~~~p~~K~~~ 743 (883)
..+|+-++.....|-|-+ .++..++++|-+.+.+ |+-.|+.|.. .+..-|+++||+...|....+|..|.+-
T Consensus 81 ~~vyLK~E~lQpsgSFK~-----RGa~~~~~kla~~~~~~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~kiq~ 155 (457)
T KOG1250|consen 81 MPVYLKREDLQPSGSFKI-----RGAGNALQKLAKQQKKAGVIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMKIQR 155 (457)
T ss_pred CceEEEehhcccccceeh-----hhHHHHHHHHHHhhhcCceEEecCccHHHHHHHHHHhcCCceEEEecCCChHHHHHH
Confidence 456777776656665543 3788888888766643 6666755555 5556678899998888888899888555
Q ss_pred HHHHhhcCCeEEEEcCCccCHHHH
Q 002770 744 ISTLQTSGHHVAMVGDGINDAPSL 767 (883)
Q Consensus 744 v~~l~~~g~~v~~vGDg~ND~~al 767 (883)
+ +..|..|...|+...-+.++
T Consensus 156 ~---~nlGA~Vil~G~~~deAk~~ 176 (457)
T KOG1250|consen 156 C---RNLGATVILSGEDWDEAKAF 176 (457)
T ss_pred H---hccCCEEEEecccHHHHHHH
Confidence 4 45588899988876555444
No 238
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=40.12 E-value=45 Score=30.80 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=32.5
Q ss_pred CCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHH
Q 002770 665 SKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAA 719 (883)
Q Consensus 665 g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ 719 (883)
+.-++.++..|. .+++.++++.+|+.|.+++.+|+.+......
T Consensus 47 ~d~~I~iS~sG~------------t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~ 89 (126)
T cd05008 47 DTLVIAISQSGE------------TADTLAALRLAKEKGAKTVAITNVVGSTLAR 89 (126)
T ss_pred CcEEEEEeCCcC------------CHHHHHHHHHHHHcCCeEEEEECCCCChHHH
Confidence 344555566665 6789999999999999999999986654333
No 239
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=40.11 E-value=61 Score=31.74 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=37.3
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCC
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGK 728 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~ 728 (883)
.+||++.+.+++|++. +++++.|.-...-|..+.+.++...
T Consensus 58 ~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~ 98 (156)
T TIGR02250 58 KLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDG 98 (156)
T ss_pred EECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCC
Confidence 4799999999999955 9999999999999999999998763
No 240
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=38.78 E-value=48 Score=30.69 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=34.8
Q ss_pred CCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHH
Q 002770 664 YSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAAT 720 (883)
Q Consensus 664 ~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~i 720 (883)
.+..++.++..|. .+++.++++.+|+.|.+++.+|+.........
T Consensus 47 ~~dl~I~iS~SG~------------t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ 91 (120)
T cd05710 47 EKSVVILASHSGN------------TKETVAAAKFAKEKGATVIGLTDDEDSPLAKL 91 (120)
T ss_pred CCcEEEEEeCCCC------------ChHHHHHHHHHHHcCCeEEEEECCCCCcHHHh
Confidence 3445666666666 78999999999999999999999876654433
No 241
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=38.73 E-value=50 Score=29.62 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=20.8
Q ss_pred CCeEEEeeCCCcCCCCEEEECCCCee
Q 002770 337 DAICVEVPTDDIRVGDSVLVLPGETI 362 (883)
Q Consensus 337 dg~~~~V~~~~l~~GDiV~v~~Ge~I 362 (883)
||+.. -|+.++++||+|.|.-|..+
T Consensus 39 NG~~a-KpS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 39 NGQRA-KPSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred CCEEc-ccccccCCCCEEEEEeCCcE
Confidence 66544 79999999999999998754
No 242
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.59 E-value=1.1e+02 Score=33.05 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=30.6
Q ss_pred HHHHHHHhh-----cCCeEEEEcCCcc-C---HHHHHhCCeeEEeecCCccH--HHHhhcCEEEeC
Q 002770 741 SEVISTLQT-----SGHHVAMVGDGIN-D---APSLALADVGIALQIEAQEN--AASTAASIILLG 795 (883)
Q Consensus 741 ~~~v~~l~~-----~g~~v~~vGDg~N-D---~~al~~AdvgIa~~~~~~~~--~a~~~ad~vl~~ 795 (883)
..+++.|+. .|..|+.+|.|.. - +.+|...+.-+.+-.....+ .....||+++..
T Consensus 143 ~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 143 YGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAA 208 (285)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEc
Confidence 344444444 4789999999865 2 33444444433331132222 345688998864
No 243
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.17 E-value=1.3e+02 Score=32.57 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=27.7
Q ss_pred cCCeEEEEcC-CccCHH---HHHhCCeeEEeecCCcc--HHHHhhcCEEEeC
Q 002770 750 SGHHVAMVGD-GINDAP---SLALADVGIALQIEAQE--NAASTAASIILLG 795 (883)
Q Consensus 750 ~g~~v~~vGD-g~ND~~---al~~AdvgIa~~~~~~~--~~a~~~ad~vl~~ 795 (883)
.|..+++||. |+--.| +|..++.-+.+-..... ......||+++.-
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVA 208 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEe
Confidence 4789999999 555555 45555555544223222 2334678998753
No 244
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.57 E-value=2e+02 Score=31.05 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=32.3
Q ss_pred CccchHHHHHHHhh--cCCeEEEEcCCccC----HHHHHhCCeeEEeecCCccH--HHHhhcCEEEeC
Q 002770 736 TPQQKSEVISTLQT--SGHHVAMVGDGIND----APSLALADVGIALQIEAQEN--AASTAASIILLG 795 (883)
Q Consensus 736 ~p~~K~~~v~~l~~--~g~~v~~vGDg~ND----~~al~~AdvgIa~~~~~~~~--~a~~~ad~vl~~ 795 (883)
+|..=.++++.+.- .|+.|++||.+..= +.+|...+--+.+-.....+ .....||+++..
T Consensus 141 Tp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsA 208 (278)
T PRK14172 141 TPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVA 208 (278)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEc
Confidence 44443444444432 48999999998543 33454444444442133322 233578988764
No 245
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=37.25 E-value=78 Score=34.43 Aligned_cols=84 Identities=23% Similarity=0.370 Sum_probs=53.9
Q ss_pred ecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HHcCCCC---------------------ceEEEecCccchH
Q 002770 684 ISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATA-KEVGIGK---------------------EYINSSLTPQQKS 741 (883)
Q Consensus 684 l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia-~~~gi~~---------------------~~v~~~~~p~~K~ 741 (883)
+-|.+|. .+.|+++|+.|.++.+++--.-..+...+ ...|++- -++.+++-|++..
T Consensus 163 vLdRpRH--~~lI~eiR~~Gari~Li~DGDVa~ai~~~~~~s~vD~~~GiGGaPEGVlaAaAlkclGG~mqgRL~~~~~~ 240 (319)
T PRK09479 163 VLDRPRH--EELIAEIREAGARVKLISDGDVAGAIATAFPDTGVDILMGIGGAPEGVLAAAALKCLGGEMQGRLLPRNEE 240 (319)
T ss_pred EEcCchH--HHHHHHHHHcCCeEEEeccccHHHHHHHhcCCCCeeEEEEcCcChHHHHHHHHHHhcCceeEEeECCCCHH
Confidence 3454444 58899999999999999954444444444 2233320 1567788776654
Q ss_pred HHHHHHhh---------------cCCeEEEEcCCccCHHHHHh
Q 002770 742 EVISTLQT---------------SGHHVAMVGDGINDAPSLAL 769 (883)
Q Consensus 742 ~~v~~l~~---------------~g~~v~~vGDg~ND~~al~~ 769 (883)
+.-+..+. .|+.|.++.-|+.|...|+-
T Consensus 241 e~~r~~~~Gi~D~~kv~~~~dLv~gddv~F~ATGVTdG~lL~G 283 (319)
T PRK09479 241 ERARAKKMGITDLDKVLTLDDLVRGDDVIFAATGVTDGDLLKG 283 (319)
T ss_pred HHHHHHHcCCcChhheeEHHHcccCCCEEEEEeCCCCCCCcCC
Confidence 44333221 24589999999999988863
No 246
>PLN02645 phosphoglycolate phosphatase
Probab=36.37 E-value=78 Score=34.82 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=37.3
Q ss_pred HHHHHhhcCCeEEEEcCCc-cCHHHHHhCCe-eEEeecCCcc--HHHH----hhcCEEEeCCChhhHHHHH
Q 002770 743 VISTLQTSGHHVAMVGDGI-NDAPSLALADV-GIALQIEAQE--NAAS----TAASIILLGNKLSQVVDAL 805 (883)
Q Consensus 743 ~v~~l~~~g~~v~~vGDg~-ND~~al~~Adv-gIa~~~~~~~--~~a~----~~ad~vl~~~~~~~l~~~i 805 (883)
+++.+.-....++||||.. +|+.+-+.|++ +|.+..+..+ +... ..+|+++ +++..+..++
T Consensus 239 a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~--~~~~~l~~~~ 307 (311)
T PLN02645 239 LANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYT--SKISDFLTLK 307 (311)
T ss_pred HHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEE--CCHHHHHHHh
Confidence 3444444567899999997 99999999995 3334223222 2111 2467777 4466665543
No 247
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.21 E-value=1.2e+02 Score=32.99 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=31.8
Q ss_pred CccchHHHHHHHhh--cCCeEEEEcCCccC----HHHHHh--CCeeEEeecCCccH--HHHhhcCEEEeC
Q 002770 736 TPQQKSEVISTLQT--SGHHVAMVGDGIND----APSLAL--ADVGIALQIEAQEN--AASTAASIILLG 795 (883)
Q Consensus 736 ~p~~K~~~v~~l~~--~g~~v~~vGDg~ND----~~al~~--AdvgIa~~~~~~~~--~a~~~ad~vl~~ 795 (883)
+|..=.++++.++- .|.+|+.||.|..= +.+|.. |.|-++- ....+ .....||+++..
T Consensus 140 Tp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~h--s~t~~l~~~~~~ADIvV~A 207 (285)
T PRK14191 140 TPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCH--ILTKDLSFYTQNADIVCVG 207 (285)
T ss_pred cHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEe--CCcHHHHHHHHhCCEEEEe
Confidence 34333444444332 48999999999221 223433 5566554 33333 244678998864
No 248
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=35.80 E-value=5.8e+02 Score=27.34 Aligned_cols=84 Identities=13% Similarity=0.216 Sum_probs=55.3
Q ss_pred EEecCCCChhHHHHHHHHHHCCCEEE-EEcCCc-HHHHHHHHHHcCCCCceEEE--e--------cCccchHHHHHHHhh
Q 002770 682 IAISDSLRHDAEHTVRSLQQKGIKTL-LLSGDR-EEAVAATAKEVGIGKEYINS--S--------LTPQQKSEVISTLQT 749 (883)
Q Consensus 682 i~l~D~lr~~~~~~i~~L~~~Gi~v~-~lTGd~-~~~a~~ia~~~gi~~~~v~~--~--------~~p~~K~~~v~~l~~ 749 (883)
+.+-|.+-++..+.++.+++.|+..+ +++=.. .+....+++... ..+|+ + ..+++-.++++.+++
T Consensus 123 viipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~---gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~ 199 (263)
T CHL00200 123 LIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAP---GCIYLVSTTGVTGLKTELDKKLKKLIETIKK 199 (263)
T ss_pred EEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCC---CcEEEEcCCCCCCCCccccHHHHHHHHHHHH
Confidence 34567677889999999999999854 555443 456677777764 13443 1 123444677777777
Q ss_pred cCCeEEEEcCCccCHHHHH
Q 002770 750 SGHHVAMVGDGINDAPSLA 768 (883)
Q Consensus 750 ~g~~v~~vGDg~ND~~al~ 768 (883)
.-..-.+||=|+|+....+
T Consensus 200 ~t~~Pi~vGFGI~~~e~~~ 218 (263)
T CHL00200 200 MTNKPIILGFGISTSEQIK 218 (263)
T ss_pred hcCCCEEEECCcCCHHHHH
Confidence 6556677899999554433
No 249
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=35.77 E-value=1.5e+02 Score=31.00 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=68.8
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcC-C---CCceEE--------EecCccchHHHHHHHhhcC-CeE
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVG-I---GKEYIN--------SSLTPQQKSEVISTLQTSG-HHV 754 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~g-i---~~~~v~--------~~~~p~~K~~~v~~l~~~g-~~v 754 (883)
+-||+.+.++.|+..|+.+.++|+-+..++..-.+..+ + -...++ ....|+-=+...+.+.... +++
T Consensus 93 ~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~k~ 172 (222)
T KOG2914|consen 93 LMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPSKC 172 (222)
T ss_pred cCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCccce
Confidence 35699999999999999999999996666554444443 2 011222 1123333356667777777 899
Q ss_pred EEEcCCccCHHHHHhCCeeEEeec-CCccHHHHhhcCEEE
Q 002770 755 AMVGDGINDAPSLALADVGIALQI-EAQENAASTAASIIL 793 (883)
Q Consensus 755 ~~vGDg~ND~~al~~AdvgIa~~~-~~~~~~a~~~ad~vl 793 (883)
+++.|..+=..|-++|+.=+-+-. .+-.....+.+++++
T Consensus 173 lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~~~~~~~~~~ 212 (222)
T KOG2914|consen 173 LVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLIL 212 (222)
T ss_pred EEECCCHHHHHHHHhcCCeEEEecCCCcchhhhhccceec
Confidence 999999999999999985443311 122333444555554
No 250
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=35.70 E-value=64 Score=31.81 Aligned_cols=49 Identities=12% Similarity=0.285 Sum_probs=37.7
Q ss_pred cCCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH
Q 002770 661 PSNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATA 721 (883)
Q Consensus 661 ~~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia 721 (883)
..+.|..++.++-.|. .+++.++++..++.|++++-+||++-.....++
T Consensus 106 ~g~~GDvLigISTSGN------------S~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~ 154 (176)
T COG0279 106 LGQPGDVLIGISTSGN------------SKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLL 154 (176)
T ss_pred cCCCCCEEEEEeCCCC------------CHHHHHHHHHHHHcCCEEEEEecCCCccccccc
Confidence 3455555555555544 688999999999999999999999987766665
No 251
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.68 E-value=1.8e+02 Score=31.72 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=32.4
Q ss_pred CccchHHHHHHHhh--cCCeEEEEcCCccC----HHHHHh------CCeeEEeecCCccH--HHHhhcCEEEeC
Q 002770 736 TPQQKSEVISTLQT--SGHHVAMVGDGIND----APSLAL------ADVGIALQIEAQEN--AASTAASIILLG 795 (883)
Q Consensus 736 ~p~~K~~~v~~l~~--~g~~v~~vGDg~ND----~~al~~------AdvgIa~~~~~~~~--~a~~~ad~vl~~ 795 (883)
+|..=.++++.++- .|..|+.||.+..= +.+|.. |-|-++- ....+ .....||+++..
T Consensus 140 Tp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvch--s~T~~l~~~~~~ADIvIsA 211 (297)
T PRK14167 140 TPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCH--SRTDDLAAKTRRADIVVAA 211 (297)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeC--CCCCCHHHHHhhCCEEEEc
Confidence 34333444444332 48999999998543 334433 4466654 33222 345689999863
No 252
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.61 E-value=1.2e+02 Score=33.12 Aligned_cols=44 Identities=27% Similarity=0.318 Sum_probs=25.4
Q ss_pred cCCeEEEEcCCccC----HHHHHh--CCeeEEeecCCcc--HHHHhhcCEEEeC
Q 002770 750 SGHHVAMVGDGIND----APSLAL--ADVGIALQIEAQE--NAASTAASIILLG 795 (883)
Q Consensus 750 ~g~~v~~vGDg~ND----~~al~~--AdvgIa~~~~~~~--~~a~~~ad~vl~~ 795 (883)
.|..|++||.+..= +.+|.. |.|-++- .... ......||+++..
T Consensus 157 ~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~h--s~T~~l~~~~~~ADIvIsA 208 (297)
T PRK14186 157 AGKKAVVVGRSILVGKPLALMLLAANATVTIAH--SRTQDLASITREADILVAA 208 (297)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeC--CCCCCHHHHHhhCCEEEEc
Confidence 48899999998432 234433 4455554 3222 2234678888763
No 253
>PHA02669 hypothetical protein; Provisional
Probab=34.57 E-value=86 Score=30.35 Aligned_cols=49 Identities=27% Similarity=0.337 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHccCCccCccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcc
Q 002770 247 MNSLVGFGSIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVLLGRSLEERA-RIRASSDMNELLSL 312 (883)
Q Consensus 247 md~Lv~l~~~~a~~~s~~~~~~~~~~~~~~~f~~~~~ll~~~~~g~~le~~~-~~ra~~~~~~l~~~ 312 (883)
|..||.++++++.++ -+++.+-+++-+|-+.|... |.|.++.|++|...
T Consensus 1 m~~LVii~iIvavi~-----------------LTgAaiYlLiEiGLAaERanKrsRvK~nMRkLatQ 50 (210)
T PHA02669 1 MMALVLIGIIVAVIY-----------------LTGAAIYLLIEIGLAAERANKRSRVKANMRKLATQ 50 (210)
T ss_pred CceeehhHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 566777777766443 24455555677887776654 34556667766543
No 254
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.53 E-value=1.5e+02 Score=32.21 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=26.5
Q ss_pred cCCeEEEEcCCcc----CHHHHHh--CCeeEEeecCCccH--HHHhhcCEEEeC
Q 002770 750 SGHHVAMVGDGIN----DAPSLAL--ADVGIALQIEAQEN--AASTAASIILLG 795 (883)
Q Consensus 750 ~g~~v~~vGDg~N----D~~al~~--AdvgIa~~~~~~~~--~a~~~ad~vl~~ 795 (883)
.|.+|+.+|.|.. =+.+|.. |.|-+.- ....+ .....||+++..
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~--s~t~~l~~~~~~ADIVIsA 208 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILH--SRSKDMASYLKDADVIVSA 208 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEe--CCchhHHHHHhhCCEEEEC
Confidence 4789999999852 1233433 5555555 33222 344678998864
No 255
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=34.42 E-value=9.7e+02 Score=29.52 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=51.2
Q ss_pred HHHHHHHhhcCCe-EEEEcCCccCHHHHH-------------------------hCCeeEEeecCCccH--HHHhhcCEE
Q 002770 741 SEVISTLQTSGHH-VAMVGDGINDAPSLA-------------------------LADVGIALQIEAQEN--AASTAASII 792 (883)
Q Consensus 741 ~~~v~~l~~~g~~-v~~vGDg~ND~~al~-------------------------~AdvgIa~~~~~~~~--~a~~~ad~v 792 (883)
.+.++.|++.|-+ ++..||...=+.+++ +.+--++|.| +|.. -|...||+=
T Consensus 447 ~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ~~G~~VaMtG-DGvNDAPALa~ADVG 525 (673)
T PRK14010 447 VERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQAKGHIVAMTG-DGTNDAPALAEANVG 525 (673)
T ss_pred HHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHHhCCCEEEEEC-CChhhHHHHHhCCEE
Confidence 4678888888854 456788755444442 2233366643 3322 355677875
Q ss_pred E-eCCC------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002770 793 L-LGNK------------LSQVVDALDLAKATMAKVYQNLSWAVAYNVVA 829 (883)
Q Consensus 793 l-~~~~------------~~~l~~~i~~~r~~~~~i~~n~~~a~~~n~~~ 829 (883)
+ +.+. +++=+.-|-.+-+.=+++..|+.=...|.+..
T Consensus 526 IAMgsGTdvAkeAADiVLldd~ls~Iv~av~~gR~i~~n~~~~~~f~~~~ 575 (673)
T PRK14010 526 LAMNSGTMSAKEAANLIDLDSNPTKLMEVVLIGKQLLMTRGSLTTFSIAN 575 (673)
T ss_pred EEeCCCCHHHHHhCCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHheeeec
Confidence 5 3322 22222344466677788888888877776543
No 256
>PF15584 Imm44: Immunity protein 44
Probab=34.19 E-value=17 Score=31.76 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=15.7
Q ss_pred CCCEEEECCCCeeeeeEEE
Q 002770 350 VGDSVLVLPGETIPVDGRV 368 (883)
Q Consensus 350 ~GDiV~v~~Ge~IPaDg~v 368 (883)
+.+..+|+.|++|||||+=
T Consensus 13 ~~~~~~I~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEEecCCCcccCCeE
Confidence 4455688999999999986
No 257
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=34.14 E-value=90 Score=25.81 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=41.1
Q ss_pred EEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcccc
Q 002770 76 LDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKR 148 (883)
Q Consensus 76 l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~ 148 (883)
+.+.|+.|+.=+-..++++.+++.=. ...|..|... ..+.+.+..++.||+...
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~G~---------~l~V~~d~~~----------a~~di~~~~~~~G~~~~~ 55 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQDGE---------QLEVKASDPG----------FARDAQAWCKSTGNTLIS 55 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCCCC---------EEEEEECCcc----------HHHHHHHHHHHcCCEEEE
Confidence 57889999999999999999886322 3344445433 578899999999999753
No 258
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.73 E-value=2.1e+02 Score=25.20 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=44.6
Q ss_pred eEEEEEecCCCChhhHHHHHHhhccCCCceEEEE-----ecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcc
Q 002770 72 STVLLDVSGMMCGGCVARVKSVLTADDRVDSVAV-----NMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEA 146 (883)
Q Consensus 72 ~~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~ 146 (883)
.++.+.+--.+-.--.--+-+.|++++||..+++ +.++....+...... .+.+++.+.|++.|-..
T Consensus 6 RRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~---------ldydei~~~iE~~Gg~I 76 (97)
T COG1888 6 RRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTN---------LDYDEIEEVIEELGGAI 76 (97)
T ss_pred eeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCC---------CCHHHHHHHHHHcCCee
Confidence 3444554443322223345667888888876654 555666666666655 78999999999999876
Q ss_pred cc
Q 002770 147 KR 148 (883)
Q Consensus 147 ~~ 148 (883)
+-
T Consensus 77 HS 78 (97)
T COG1888 77 HS 78 (97)
T ss_pred ee
Confidence 53
No 259
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.70 E-value=1.4e+02 Score=32.44 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=30.6
Q ss_pred CccchHHHHHHHh--hcCCeEEEEcCCccC----HHHHH--hCCeeEEeecCCccH--HHHhhcCEEEeC
Q 002770 736 TPQQKSEVISTLQ--TSGHHVAMVGDGIND----APSLA--LADVGIALQIEAQEN--AASTAASIILLG 795 (883)
Q Consensus 736 ~p~~K~~~v~~l~--~~g~~v~~vGDg~ND----~~al~--~AdvgIa~~~~~~~~--~a~~~ad~vl~~ 795 (883)
+|..=.++++.++ -.|..|+.||.+..= +.+|. .|.|-++- ....+ .....||+++..
T Consensus 141 Tp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~ch--s~t~~l~~~~~~ADIvI~A 208 (284)
T PRK14190 141 TPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCH--SKTKNLAELTKQADILIVA 208 (284)
T ss_pred CHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEe--CCchhHHHHHHhCCEEEEe
Confidence 3333344444432 147899999997432 22333 34555554 32222 345678888753
No 260
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=33.57 E-value=1.2e+02 Score=26.01 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=36.7
Q ss_pred EEEecCCCChhHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHcCCC
Q 002770 681 AIAISDSLRHDAEHTVRSLQQKGIKTLL-LSGDREEAVAATAKEVGIG 727 (883)
Q Consensus 681 ~i~l~D~lr~~~~~~i~~L~~~Gi~v~~-lTGd~~~~a~~ia~~~gi~ 727 (883)
++.+.+...+.+.+..+.|++.|+++.+ ..+.+...-...|+..|++
T Consensus 6 ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 6 VIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 3445566788889999999999999877 5677777777778888875
No 261
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=33.08 E-value=2.5e+02 Score=24.39 Aligned_cols=19 Identities=5% Similarity=0.219 Sum_probs=7.2
Q ss_pred HHHHHHHHcccccceEEEE
Q 002770 303 SSDMNELLSLVSTQSRLVI 321 (883)
Q Consensus 303 ~~~~~~l~~~~~~~~~v~~ 321 (883)
++..+++.+.+.+--+|+.
T Consensus 28 ~k~~~~m~~~L~~Gd~VvT 46 (84)
T TIGR00739 28 RKAHKKLIESLKKGDKVLT 46 (84)
T ss_pred HHHHHHHHHhCCCCCEEEE
Confidence 3333444333333334443
No 262
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=31.83 E-value=24 Score=35.17 Aligned_cols=13 Identities=38% Similarity=0.606 Sum_probs=12.2
Q ss_pred EEecCcccccCCc
Q 002770 542 LALDKTGTLTEGK 554 (883)
Q Consensus 542 i~fDKTGTLT~~~ 554 (883)
+|||.+||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6999999999998
No 263
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=31.71 E-value=1.2e+02 Score=29.13 Aligned_cols=42 Identities=14% Similarity=0.358 Sum_probs=18.5
Q ss_pred ccCccchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccc
Q 002770 272 EWDASFFEEPVMLLGFVLLGRSL-EERARIRASSDMNELLSLVS 314 (883)
Q Consensus 272 ~~~~~~f~~~~~ll~~~~~g~~l-e~~~~~ra~~~~~~l~~~~~ 314 (883)
++...+|.-+++ +.++.+-.+. -.++-.|..+.+|+|.+..+
T Consensus 63 G~~S~~FAia~v-~a~IVmyDA~GVRr~aG~qA~~lN~l~~~~~ 105 (141)
T PF02681_consen 63 GFDSPLFAIAAV-FALIVMYDAMGVRRAAGKQAKVLNQLIEELE 105 (141)
T ss_pred CCCCcHHHHHHH-HHHhheeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566654443 3344333332 22333334455555554433
No 264
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.64 E-value=1.1e+02 Score=29.21 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=24.4
Q ss_pred HHHHcCCCCchHHHHHHHH--------HHHHHHHHHHHccCCccCccchhhHHHHHHHH
Q 002770 238 MAFRKGSPNMNSLVGFGSI--------VAFLISLVSLLKPELEWDASFFEEPVMLLGFV 288 (883)
Q Consensus 238 ~~l~~~~~~md~Lv~l~~~--------~a~~~s~~~~~~~~~~~~~~~f~~~~~ll~~~ 288 (883)
.-++.|+.|...+.+.|.+ .|...|+ ....+|+..||.-++.+..++
T Consensus 31 ~~~~~rk~~~~~~~sTGGMPSsHSA~VtALat~i----al~~G~dS~lFaiA~vfaiIv 85 (153)
T COG1963 31 ELIRTRKLNVTLLFSTGGMPSSHSALVTALATSI----ALTEGLDSPLFAIAAVFAIIV 85 (153)
T ss_pred HHHHhccccceeeeecCCCCchHHHHHHHHHHHH----HHHhcCCCchHHHHHHHHHHH
Confidence 5566777766666555432 2222222 113456677786666544433
No 265
>PRK06450 threonine synthase; Validated
Probab=31.57 E-value=1.3e+02 Score=33.66 Aligned_cols=74 Identities=23% Similarity=0.237 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHCCCE-EEEEc-CCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHH
Q 002770 691 DAEHTVRSLQQKGIK-TLLLS-GDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSL 767 (883)
Q Consensus 691 ~~~~~i~~L~~~Gi~-v~~lT-Gd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al 767 (883)
++.-.|.++++.|.+ ++..| |..-......|+.+|+....+..+-.|..|...++ ..|..|..++....|+..+
T Consensus 84 ga~~~i~~a~~~g~~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~---~~GA~vi~v~~~~~~~~~~ 159 (338)
T PRK06450 84 GSVTLISYLAEKGIKQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIE---SYGAEVVRVRGSREDVAKA 159 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHH---HcCCEEEEECCCHHHHHHH
Confidence 456677888888876 45555 66667778889999997544555556777766544 5688999998776665443
No 266
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=30.91 E-value=56 Score=30.22 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=29.7
Q ss_pred ChhHHHHHHHHHHCCCE-EEEEcCCcHHHHHHHHHHcCCC
Q 002770 689 RHDAEHTVRSLQQKGIK-TLLLSGDREEAVAATAKEVGIG 727 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~-v~~lTGd~~~~a~~ia~~~gi~ 727 (883)
.+.+.+.++++.+.|++ +|+.+|.....+...|++.|+.
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 45678999999999986 7899999999999999999983
No 267
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=30.25 E-value=4e+02 Score=26.77 Aligned_cols=83 Identities=13% Similarity=0.168 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHCCCEEEE--EcCCcHHHHHHHHHHcCCCCceEEEec--Ccc-----chHHHHHHHhhcCCeEEEEcCCc
Q 002770 691 DAEHTVRSLQQKGIKTLL--LSGDREEAVAATAKEVGIGKEYINSSL--TPQ-----QKSEVISTLQTSGHHVAMVGDGI 761 (883)
Q Consensus 691 ~~~~~i~~L~~~Gi~v~~--lTGd~~~~a~~ia~~~gi~~~~v~~~~--~p~-----~K~~~v~~l~~~g~~v~~vGDg~ 761 (883)
...+.++.+++.|+++.+ ++-++...+.. +...|.+ .+...+ .+. .-.+.++.+++..+.-.+++=|+
T Consensus 91 ~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~~~~d--~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI 167 (202)
T cd04726 91 TIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLKLGVD--IVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGI 167 (202)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHHCCCC--EEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCc
Confidence 467889999999999875 67777777766 6666775 332211 112 12345555554223333444466
Q ss_pred c--CHHHHHhCCe-eEEe
Q 002770 762 N--DAPSLALADV-GIAL 776 (883)
Q Consensus 762 N--D~~al~~Adv-gIa~ 776 (883)
| ++..+..+++ ++.+
T Consensus 168 ~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 168 TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred CHHHHHHHHhcCCCEEEE
Confidence 5 4444444433 4555
No 268
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.18 E-value=2.8e+02 Score=30.25 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=31.0
Q ss_pred CccchHHHHHHHhh--cCCeEEEEcCCccC----HHHHHh------CCeeEEeecCCccHHHHhhcCEEEeC
Q 002770 736 TPQQKSEVISTLQT--SGHHVAMVGDGIND----APSLAL------ADVGIALQIEAQENAASTAASIILLG 795 (883)
Q Consensus 736 ~p~~K~~~v~~l~~--~g~~v~~vGDg~ND----~~al~~------AdvgIa~~~~~~~~~a~~~ad~vl~~ 795 (883)
+|..=.++++.+.- .|..|+.||.+..= +.+|.. |.|-++-.....-......||+++..
T Consensus 140 Tp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsA 211 (293)
T PRK14185 140 TPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAA 211 (293)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEc
Confidence 33333444443322 48899999997432 334433 45566542111122234578888754
No 269
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=29.87 E-value=5.6e+02 Score=30.62 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHCCCEEEEEcCCc-HHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCcc
Q 002770 691 DAEHTVRSLQQKGIKTLLLSGDR-EEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGIN 762 (883)
Q Consensus 691 ~~~~~i~~L~~~Gi~v~~lTGd~-~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~N 762 (883)
|...+++.+++.+-++.+++=.+ ...+..+++-++++- ..+.-.++++=...++.++++|.. +.|||+.-
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i-~~~~~~~~~e~~~~v~~lk~~G~~-~vvG~~~~ 165 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRI-EQRSYVTEEDARGQINELKANGIE-AVVGAGLI 165 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCce-EEEEecCHHHHHHHHHHHHHCCCC-EEEcCchH
Confidence 56788888888888888887444 557788899999863 556667888889999999999965 56799765
No 270
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=29.64 E-value=1e+02 Score=30.41 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=41.9
Q ss_pred hhhHHHHHHhhccCCCceEEEEecCCCe-------------------EEEEecccchhhhhhhhcCCHHHHHHHHHhcC
Q 002770 84 GGCVARVKSVLTADDRVDSVAVNMLTET-------------------AAIKLRTEAVEESEEVVNNVAESLGKRLMECG 143 (883)
Q Consensus 84 ~~C~~~Ie~~l~~~~gV~~~~v~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G 143 (883)
.+|-|.+|.+..++|||...+|-++.++ +.|.|||.. ++.++|.+...+.-
T Consensus 31 ~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~---------~sy~~Lld~Fw~~H 100 (191)
T KOG1635|consen 31 AGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKV---------ISYEELLDFFWSRH 100 (191)
T ss_pred ccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCccc---------ccHHHHHHHHHHcC
Confidence 5799999999999999999998776553 567899987 88899988776543
No 271
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=29.55 E-value=1.1e+02 Score=28.44 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=43.6
Q ss_pred EEEEEEecCCCChhHHHHHHHHHHCCC-E-EEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHH
Q 002770 678 IIGAIAISDSLRHDAEHTVRSLQQKGI-K-TLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSE 742 (883)
Q Consensus 678 ~lG~i~l~D~lr~~~~~~i~~L~~~Gi-~-v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~ 742 (883)
++++-.......+.+++.++.|+++|. + .+++-|.....-....++.|++. .++.+.++++=..
T Consensus 53 ~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~-~~~~~~~~~~~~~ 118 (122)
T cd02071 53 VIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAE-IFGPGTSIEEIID 118 (122)
T ss_pred EEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCE-EECCCCCHHHHHH
Confidence 555555566778889999999999977 4 35666666655566777899862 4555555554433
No 272
>PLN02565 cysteine synthase
Probab=29.54 E-value=1.7e+02 Score=32.34 Aligned_cols=90 Identities=11% Similarity=0.077 Sum_probs=55.8
Q ss_pred EEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCC-----E-EEEE-cCCcHHHHHHHHHHcCCCCceEEEecCccchH
Q 002770 669 VYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGI-----K-TLLL-SGDREEAVAATAKEVGIGKEYINSSLTPQQKS 741 (883)
Q Consensus 669 ~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi-----~-v~~l-TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~ 741 (883)
+|+=.+.....| .|+|. .+...+..+.+.|. + ++-. ||..-......|+.+|+....+..+-.|+.|.
T Consensus 32 i~~K~E~~nPtG--SfKdR---~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~ 106 (322)
T PLN02565 32 IAAKLEMMEPCS--SVKDR---IGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERR 106 (322)
T ss_pred EEEEecccCCcc--chHHH---HHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHH
Confidence 444444443444 33443 56667777777765 3 4545 45556667788889999754455555677776
Q ss_pred HHHHHHhhcCCeEEEEcCCccCHHH
Q 002770 742 EVISTLQTSGHHVAMVGDGINDAPS 766 (883)
Q Consensus 742 ~~v~~l~~~g~~v~~vGDg~ND~~a 766 (883)
+.++. .|..|..+++..+.-.+
T Consensus 107 ~~i~~---~GA~V~~~~~~~~~~~~ 128 (322)
T PLN02565 107 IILLA---FGAELVLTDPAKGMKGA 128 (322)
T ss_pred HHHHH---cCCEEEEeCCCCCcHHH
Confidence 66654 57788889875443333
No 273
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.52 E-value=4e+02 Score=25.23 Aligned_cols=97 Identities=18% Similarity=0.129 Sum_probs=61.6
Q ss_pred EEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCc-HHHHHHHHHHcCCCCceEEEecCc---cchHHHHHHHhhcCC-
Q 002770 678 IIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDR-EEAVAATAKEVGIGKEYINSSLTP---QQKSEVISTLQTSGH- 752 (883)
Q Consensus 678 ~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~-~~~a~~ia~~~gi~~~~v~~~~~p---~~K~~~v~~l~~~g~- 752 (883)
++|.++. |-=..++.=+-..|+..|++|+-+-+|. .+....-|++-+-+- ...+.+.. +.=..+++.|+++|.
T Consensus 6 ~~a~~g~-D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adi-i~iSsl~~~~~~~~~~~~~~L~~~g~~ 83 (132)
T TIGR00640 6 LVAKMGQ-DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHV-VGVSSLAGGHLTLVPALRKELDKLGRP 83 (132)
T ss_pred EEEeeCC-CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCE-EEEcCchhhhHHHHHHHHHHHHhcCCC
Confidence 5565555 5556666666677899999999888873 445555566655431 22333332 234567788888763
Q ss_pred -eEEEEcC--CccCHHHHHhCCeeEEe
Q 002770 753 -HVAMVGD--GINDAPSLALADVGIAL 776 (883)
Q Consensus 753 -~v~~vGD--g~ND~~al~~AdvgIa~ 776 (883)
...++|- ...|...+++++|-=.+
T Consensus 84 ~i~vivGG~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 84 DILVVVGGVIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CCEEEEeCCCChHhHHHHHHCCCCEEE
Confidence 4577773 44567888888875555
No 274
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=29.10 E-value=4.7e+02 Score=27.88 Aligned_cols=91 Identities=20% Similarity=0.339 Sum_probs=54.8
Q ss_pred EecCCCChhHHHHHHHHHHCCCEEE-EEcCCc-HHHHHHHHHHcC-CCCceEEEe-----c---CccchHHHHHHHhhcC
Q 002770 683 AISDSLRHDAEHTVRSLQQKGIKTL-LLSGDR-EEAVAATAKEVG-IGKEYINSS-----L---TPQQKSEVISTLQTSG 751 (883)
Q Consensus 683 ~l~D~lr~~~~~~i~~L~~~Gi~v~-~lTGd~-~~~a~~ia~~~g-i~~~~v~~~-----~---~p~~K~~~v~~l~~~g 751 (883)
.+-|.+-++..+.++.+++.|++.+ +++-.. .+....+++... .- .+.+. . .+.+-.+.++.+++.-
T Consensus 120 iipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfi--y~vs~~G~TG~~~~~~~~~~~~i~~lr~~~ 197 (256)
T TIGR00262 120 LVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFV--YLVSRAGVTGARNRAASALNELVKRLKAYS 197 (256)
T ss_pred EECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCE--EEEECCCCCCCcccCChhHHHHHHHHHhhc
Confidence 3456666889999999999999965 666544 345667777653 31 22111 1 1223456677776653
Q ss_pred CeEEEEcCCccC---HHHHHh--CCeeEEe
Q 002770 752 HHVAMVGDGIND---APSLAL--ADVGIAL 776 (883)
Q Consensus 752 ~~v~~vGDg~ND---~~al~~--AdvgIa~ 776 (883)
..-.++|=|+|. +..+.. || |+-+
T Consensus 198 ~~pi~vgfGI~~~e~~~~~~~~GAD-gvVv 226 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVKQAIDAGAD-GVIV 226 (256)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCC-EEEE
Confidence 344678888884 444433 45 5555
No 275
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=29.06 E-value=80 Score=31.40 Aligned_cols=33 Identities=9% Similarity=0.159 Sum_probs=27.7
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGDREEAVAATA 721 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia 721 (883)
.+++.++++.+|+.|++++.+|+.........|
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~a 117 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPESTLGKLA 117 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCchHHhC
Confidence 788899999999999999999998776554444
No 276
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=28.99 E-value=2.3e+02 Score=29.42 Aligned_cols=63 Identities=16% Similarity=0.378 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHCCCEEEEEcCCcH-----HHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEE
Q 002770 690 HDAEHTVRSLQQKGIKTLLLSGDRE-----EAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAM 756 (883)
Q Consensus 690 ~~~~~~i~~L~~~Gi~v~~lTGd~~-----~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~ 756 (883)
++..++++++++.|++ .+++||.. .....+++++|+. +++-+--.+|.++++.+...|.....
T Consensus 73 ~~l~~~l~~~~~~g~~-~vv~G~i~sd~~~~~~e~v~~~~gl~---~~~PLw~~~~~el~~~~~~~G~~~~i 140 (218)
T TIGR03679 73 EDLKGALKELKREGVE-GIVTGAIASRYQKSRIERICEELGLK---VFAPLWGRDQEEYLRELVERGFRFII 140 (218)
T ss_pred HHHHHHHHHHHHcCCC-EEEECCcccHhHHHHHHHHHHhCCCe---EEeehhcCCHHHHHHHHHHCCCEEEE
Confidence 3466778888877877 57788875 4556888999994 77777777899999999999865544
No 277
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=28.98 E-value=1.3e+02 Score=24.53 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=40.1
Q ss_pred EEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcccc
Q 002770 76 LDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKR 148 (883)
Q Consensus 76 l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~ 148 (883)
+...|+.|+.=.-.+.+++.+++.= ....|..+... ..+.+.+.+...||+...
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~~g---------~~l~v~~d~~~----------~~~~i~~~~~~~g~~~~~ 55 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLKSG---------EVLEVLLDDPG----------AVEDIPAWAKETGHEVLE 55 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCCCC---------CEEEEEecCCc----------HHHHHHHHHHHcCCEEEE
Confidence 5678999999999999999886532 23344555433 578899999999999643
No 278
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=28.68 E-value=95 Score=28.63 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=27.4
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGDREEAVAATA 721 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia 721 (883)
..+..+.++.+|+.|.+++.+|+.........+
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 788999999999999999999987666544444
No 279
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=28.65 E-value=2.5e+02 Score=25.51 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=29.9
Q ss_pred EEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccc
Q 002770 75 LLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEA 120 (883)
Q Consensus 75 ~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~ 120 (883)
.+++.|+.=.-+...|...+++...|..++..--..++.|.+....
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~ 48 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPE 48 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS--
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcc
Confidence 5678886666668889999999999999999999999999998764
No 280
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=28.06 E-value=3e+02 Score=27.94 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHCCCEEEEEc------CC-------cHHHHHHHHHHcCCCCceEEEecCc--cc----hHHHHHHHhhcC
Q 002770 691 DAEHTVRSLQQKGIKTLLLS------GD-------REEAVAATAKEVGIGKEYINSSLTP--QQ----KSEVISTLQTSG 751 (883)
Q Consensus 691 ~~~~~i~~L~~~Gi~v~~lT------Gd-------~~~~a~~ia~~~gi~~~~v~~~~~p--~~----K~~~v~~l~~~g 751 (883)
|..-++..+++.|.+++-++ ++ +...++.+|+.+||+ .+.....+ ++ -.+.++.++++|
T Consensus 11 DS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgip--l~~i~~~~~~e~~~~~l~~~l~~~~~~g 88 (194)
T cd01994 11 DSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIP--LIRIEISGEEEDEVEDLKELLRKLKEEG 88 (194)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCc--EEEEeCCCCchHHHHHHHHHHHHHHHcC
Confidence 45556677777888765443 11 567889999999997 34333322 11 123344444445
Q ss_pred CeEEEEcCCccC
Q 002770 752 HHVAMVGDGIND 763 (883)
Q Consensus 752 ~~v~~vGDg~ND 763 (883)
...+..||-.-|
T Consensus 89 ~~~vv~G~i~sd 100 (194)
T cd01994 89 VDAVVFGAILSE 100 (194)
T ss_pred CCEEEECccccH
Confidence 566666664433
No 281
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=27.37 E-value=1e+02 Score=28.58 Aligned_cols=67 Identities=22% Similarity=0.491 Sum_probs=40.0
Q ss_pred cCCCChhHHHHHHHHHHCCCEE---EEEcCCcHHHHH------HHHHHcCCCCceEE--EecCccchHHHHHHHhhcC
Q 002770 685 SDSLRHDAEHTVRSLQQKGIKT---LLLSGDREEAVA------ATAKEVGIGKEYIN--SSLTPQQKSEVISTLQTSG 751 (883)
Q Consensus 685 ~D~lr~~~~~~i~~L~~~Gi~v---~~lTGd~~~~a~------~ia~~~gi~~~~v~--~~~~p~~K~~~v~~l~~~g 751 (883)
...++++.++-++.|++.|+++ ++..||++.+.. ..|+++||.-..+. ...+.++=.+.++.|.+..
T Consensus 9 a~~i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~ 86 (117)
T PF00763_consen 9 AKEIKEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDP 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 3456788999999999998874 566788887664 45888999632222 1234555566667666543
No 282
>PLN02423 phosphomannomutase
Probab=27.23 E-value=1.5e+02 Score=31.27 Aligned_cols=47 Identities=9% Similarity=0.205 Sum_probs=34.2
Q ss_pred EEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHH
Q 002770 668 VVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAA 719 (883)
Q Consensus 668 ~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ 719 (883)
++++-.||. ++ .=..++.+.+.++|++|++. ++++++||+.......
T Consensus 9 i~~~D~DGT-Ll---~~~~~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~ 55 (245)
T PLN02423 9 IALFDVDGT-LT---APRKEATPEMLEFMKELRKV-VTVGVVGGSDLSKISE 55 (245)
T ss_pred EEEEeccCC-Cc---CCCCcCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHH
Confidence 344555665 32 22346889999999999977 9999999997776543
No 283
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=27.20 E-value=85 Score=31.20 Aligned_cols=42 Identities=14% Similarity=0.340 Sum_probs=34.2
Q ss_pred CCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHH
Q 002770 663 NYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEA 716 (883)
Q Consensus 663 ~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~ 716 (883)
..+..++.++..|. .+++.++++.+|+.|.+++.+|+.....
T Consensus 100 ~~~Dv~I~iS~SG~------------t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 100 QPGDVLIGISTSGN------------SPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCCCEEEEEeCCCC------------CHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 34556677777776 7899999999999999999999886555
No 284
>PRK13936 phosphoheptose isomerase; Provisional
Probab=27.11 E-value=1.8e+02 Score=29.51 Aligned_cols=47 Identities=9% Similarity=0.253 Sum_probs=36.1
Q ss_pred CCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH
Q 002770 663 NYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATA 721 (883)
Q Consensus 663 ~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia 721 (883)
..+.-++.++..|. .+++.++++.+|+.|.+++.+|+.+......++
T Consensus 110 ~~~Dv~i~iS~sG~------------t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~ 156 (197)
T PRK13936 110 QPGDVLLAISTSGN------------SANVIQAIQAAHEREMHVVALTGRDGGKMASLL 156 (197)
T ss_pred CCCCEEEEEeCCCC------------cHHHHHHHHHHHHCCCeEEEEECCCCChhhhhh
Confidence 45566677777776 788999999999999999999996655444443
No 285
>PTZ00445 p36-lilke protein; Provisional
Probab=27.10 E-value=1.7e+02 Score=30.22 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=56.3
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcC-CcHH--------------HHHHHHHHcCCCC--ceEEEe----------------
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSG-DREE--------------AVAATAKEVGIGK--EYINSS---------------- 734 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTG-d~~~--------------~a~~ia~~~gi~~--~~v~~~---------------- 734 (883)
++|+.+..+++|+++||+++++|= |... -+....+..+.+. ..+||-
T Consensus 76 ~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl 155 (219)
T PTZ00445 76 VTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGL 155 (219)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcc
Confidence 799999999999999999999993 3322 3444444433321 123321
Q ss_pred c--CccchHHHHHHHh-h---cCCeEEEEcCCccCHHHHHhCCe-eEEe
Q 002770 735 L--TPQQKSEVISTLQ-T---SGHHVAMVGDGINDAPSLALADV-GIAL 776 (883)
Q Consensus 735 ~--~p~~K~~~v~~l~-~---~g~~v~~vGDg~ND~~al~~Adv-gIa~ 776 (883)
. .|+-|.--.+.+. + ..+.++++=|....+.+.+..|+ ++-+
T Consensus 156 ~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f 204 (219)
T PTZ00445 156 DAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHV 204 (219)
T ss_pred cCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEc
Confidence 1 3334333223332 2 34689999999999999888776 4444
No 286
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=26.96 E-value=5.6e+02 Score=26.48 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHH
Q 002770 716 AVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSL 767 (883)
Q Consensus 716 ~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al 767 (883)
+.+..+.++|++-+++..--....|.+.++.+...|+++++..|..+.-..+
T Consensus 105 S~q~a~ARlg~~~~~~~~islHgr~~~~l~~~~~~~~~~vil~~~~~~P~~I 156 (210)
T COG2241 105 SVQLAAARLGWPLQDTEVISLHGRPVELLRPLLENGRRLVILTPDDFGPAEI 156 (210)
T ss_pred HHHHHHHHhCCChHHeEEEEecCCCHHHHHHHHhCCceEEEeCCCCCCHHHH
Confidence 3344556666654444444445778888888878899999999987654433
No 287
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=26.91 E-value=1e+02 Score=31.29 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=35.9
Q ss_pred CCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHH
Q 002770 663 NYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAA 719 (883)
Q Consensus 663 ~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ 719 (883)
..+.-++.++.+|. .+++.++++.+|+.|++++.+||........
T Consensus 110 ~~~Dv~I~iS~SG~------------t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~ 154 (192)
T PRK00414 110 REGDVLLGISTSGN------------SGNIIKAIEAARAKGMKVITLTGKDGGKMAG 154 (192)
T ss_pred CCCCEEEEEeCCCC------------CHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 45566777777777 7899999999999999999999986654333
No 288
>PRK13937 phosphoheptose isomerase; Provisional
Probab=26.60 E-value=91 Score=31.48 Aligned_cols=45 Identities=13% Similarity=0.247 Sum_probs=35.4
Q ss_pred CCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHH
Q 002770 663 NYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAA 719 (883)
Q Consensus 663 ~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ 719 (883)
..+.-++.++..|. .+++.++++.+|+.|++++.+|+........
T Consensus 105 ~~~Dl~i~iS~sG~------------t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~ 149 (188)
T PRK13937 105 RPGDVLIGISTSGN------------SPNVLAALEKARELGMKTIGLTGRDGGKMKE 149 (188)
T ss_pred CCCCEEEEEeCCCC------------cHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 34556677777776 7899999999999999999999976555443
No 289
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=26.27 E-value=2.4e+02 Score=27.16 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=14.7
Q ss_pred CCeEEEeeCCCcCCCCEEEEC
Q 002770 337 DAICVEVPTDDIRVGDSVLVL 357 (883)
Q Consensus 337 dg~~~~V~~~~l~~GDiV~v~ 357 (883)
|..|.-..-+++.+||.|.|-
T Consensus 108 g~~Wra~~~~~l~~G~~V~Vv 128 (140)
T COG1585 108 GESWRARSDEDLPAGDRVEVV 128 (140)
T ss_pred CeEeEEecCCCCCCCCEEEEE
Confidence 445555555888899988874
No 290
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.24 E-value=1.9e+02 Score=31.40 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=31.1
Q ss_pred cCccchHHHHHHHhh--cCCeEEEEcCCccC----HHHHHh--CCeeEEeecCCccH--HHHhhcCEEEe
Q 002770 735 LTPQQKSEVISTLQT--SGHHVAMVGDGIND----APSLAL--ADVGIALQIEAQEN--AASTAASIILL 794 (883)
Q Consensus 735 ~~p~~K~~~v~~l~~--~g~~v~~vGDg~ND----~~al~~--AdvgIa~~~~~~~~--~a~~~ad~vl~ 794 (883)
++|..=.++++.++- .|.+|+.+|.+..= +.+|.. |.|-++- ....+ .....||+++.
T Consensus 146 cTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~h--s~T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 146 CTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCH--VFTDDLKKYTLDADILVV 213 (287)
T ss_pred CcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEe--ccCCCHHHHHhhCCEEEE
Confidence 344444444444332 48899999998632 223433 4455544 32222 23467888874
No 291
>PLN02591 tryptophan synthase
Probab=26.07 E-value=7.6e+02 Score=26.24 Aligned_cols=93 Identities=22% Similarity=0.275 Sum_probs=60.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHHCCCEEE-EEcCCc-HHHHHHHHHHcCCCCceEEE--e--------cCccchHHHHHH
Q 002770 679 IGAIAISDSLRHDAEHTVRSLQQKGIKTL-LLSGDR-EEAVAATAKEVGIGKEYINS--S--------LTPQQKSEVIST 746 (883)
Q Consensus 679 lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~-~lTGd~-~~~a~~ia~~~gi~~~~v~~--~--------~~p~~K~~~v~~ 746 (883)
-|++.- |-+-++..+..+.+++.|+..+ ++|-.. .+....+++... ..+|. + -.|++-.+.++.
T Consensus 108 ~Gviip-DLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~---gFIY~Vs~~GvTG~~~~~~~~~~~~i~~ 183 (250)
T PLN02591 108 HGLVVP-DLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASE---GFVYLVSSTGVTGARASVSGRVESLLQE 183 (250)
T ss_pred CEEEeC-CCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCC---CcEEEeeCCCCcCCCcCCchhHHHHHHH
Confidence 344444 5555888999999999999865 555554 345677777642 23443 1 125555677888
Q ss_pred HhhcCCeEEEEcCCcc---CHHHHHh--CCeeEEe
Q 002770 747 LQTSGHHVAMVGDGIN---DAPSLAL--ADVGIAL 776 (883)
Q Consensus 747 l~~~g~~v~~vGDg~N---D~~al~~--AdvgIa~ 776 (883)
+++....-+++|=|++ |+..+.. || |+-+
T Consensus 184 vk~~~~~Pv~vGFGI~~~e~v~~~~~~GAD-GvIV 217 (250)
T PLN02591 184 LKEVTDKPVAVGFGISKPEHAKQIAGWGAD-GVIV 217 (250)
T ss_pred HHhcCCCceEEeCCCCCHHHHHHHHhcCCC-EEEE
Confidence 8887667788999999 4555444 44 5655
No 292
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=26.06 E-value=1.1e+02 Score=28.38 Aligned_cols=31 Identities=10% Similarity=0.284 Sum_probs=25.6
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCCcHHHHHH
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGDREEAVAA 719 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ 719 (883)
.++..+.++.+++.|++++.+|++.......
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~ 103 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANSPLAK 103 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCChhHH
Confidence 4778899999999999999999987654433
No 293
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=25.79 E-value=3e+02 Score=35.04 Aligned_cols=91 Identities=21% Similarity=0.271 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccceEEEEcCCCCC-CCCCccccCCCeEEEeeCCCcCCCCEEEECCCC
Q 002770 282 VMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESG-SSADNVLCSDAICVEVPTDDIRVGDSVLVLPGE 360 (883)
Q Consensus 282 ~~ll~~~~~g~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~-~~~~~~~~~dg~~~~V~~~~l~~GDiV~v~~Ge 360 (883)
+++++-..++.+.|.+++ |+.++++++....+.-.+....+.++. ..-...-+.-|....+...|.+|-|.++++ |+
T Consensus 96 ~iv~~~~~i~~~~e~~a~-ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~-g~ 173 (867)
T TIGR01524 96 LMVLASGLLGFIQESRAE-RAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVIS-AR 173 (867)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEe-cC
Confidence 455556678888888886 888899998877766555221100000 000001122466788889999999988887 44
Q ss_pred eeeeeEEEEeeceE
Q 002770 361 TIPVDGRVLAGRSV 374 (883)
Q Consensus 361 ~IPaDg~vl~G~~~ 374 (883)
-+=+|=-.+.|++.
T Consensus 174 ~l~VDES~LTGES~ 187 (867)
T TIGR01524 174 DLFINQSALTGESL 187 (867)
T ss_pred ceEEEcccccCCCC
Confidence 45667777777653
No 294
>PRK06381 threonine synthase; Validated
Probab=25.53 E-value=1.6e+02 Score=32.39 Aligned_cols=87 Identities=18% Similarity=0.273 Sum_probs=54.9
Q ss_pred EEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEE--EcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHH
Q 002770 669 VYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLL--LSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVIST 746 (883)
Q Consensus 669 ~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~--lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~ 746 (883)
+|+-.|+....|- |+| ..+...+..+++.|.+.++ -||..-.....+|+.+|++...+...-.|+.| ++.
T Consensus 33 i~~K~E~~nptGS--~K~---R~a~~~l~~a~~~g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~---~~~ 104 (319)
T PRK06381 33 IYLKFEGANPTGT--QKD---RIAEAHVRRAMRLGYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSR---VKE 104 (319)
T ss_pred EEEEecCCCCccC--cHH---HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHH---HHH
Confidence 5555555444332 333 2456777888888876544 35666667778889999974433433344555 456
Q ss_pred HhhcCCeEEEEcCCccC
Q 002770 747 LQTSGHHVAMVGDGIND 763 (883)
Q Consensus 747 l~~~g~~v~~vGDg~ND 763 (883)
++..|..|..+++...|
T Consensus 105 l~~~GA~V~~~~~~~~~ 121 (319)
T PRK06381 105 MEKYGAEIIYVDGKYEE 121 (319)
T ss_pred HHHcCCEEEEcCCCHHH
Confidence 67779999999875444
No 295
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=25.36 E-value=1.2e+02 Score=26.85 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=43.8
Q ss_pred eEEEEEecCCCChhhHHHHHHhhccCCCceEEEE-----ecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcc
Q 002770 72 STVLLDVSGMMCGGCVARVKSVLTADDRVDSVAV-----NMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEA 146 (883)
Q Consensus 72 ~~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~ 146 (883)
.++.|.|-=.+=++- --+-+.|.+++||..+.+ +..+....+...... ++.+++.++|++.|-..
T Consensus 5 rRlVLDVlKP~~p~i-~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~---------id~d~i~~~Ie~~Gg~I 74 (95)
T PF02680_consen 5 RRLVLDVLKPHEPSI-VELAKALSELEGVDGVNITVVEVDVETENLKITIEGDD---------IDFDEIKEAIEELGGVI 74 (95)
T ss_dssp EEEEEEEEEESSS-H-HHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESS---------E-HHHHHHHHHHTT-EE
T ss_pred eEEEEEeecCCCCCH-HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCC---------CCHHHHHHHHHHcCCeE
Confidence 344555544433332 346678899999987764 455666666666655 78999999999999876
Q ss_pred ccc
Q 002770 147 KRR 149 (883)
Q Consensus 147 ~~~ 149 (883)
+-.
T Consensus 75 HSI 77 (95)
T PF02680_consen 75 HSI 77 (95)
T ss_dssp EEE
T ss_pred Eee
Confidence 543
No 296
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.30 E-value=2.6e+02 Score=28.06 Aligned_cols=119 Identities=13% Similarity=0.103 Sum_probs=69.3
Q ss_pred HHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHc-----CCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHHHH
Q 002770 693 EHTVRSLQQKGIKTLLLSGDREEAVAATAKEV-----GIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSL 767 (883)
Q Consensus 693 ~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~-----gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~al 767 (883)
.+.++.+.+.|.++.++ |..+..+...++.+ |+.-.-...-.+|++-.++++.+.+.+..+++||=|.-=-+.+
T Consensus 38 ~~l~~~~~~~~~~vfll-G~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~ 116 (177)
T TIGR00696 38 EELCQRAGKEKLPIFLY-GGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIW 116 (177)
T ss_pred HHHHHHHHHcCCeEEEE-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHH
Confidence 56677777889899888 55555655555554 3320011122356666789999999999999999995443332
Q ss_pred H-------hCCeeEEeecCCccHHH---HhhcCEEEeCCChhhHHHHHHHHHHHHHH
Q 002770 768 A-------LADVGIALQIEAQENAA---STAASIILLGNKLSQVVDALDLAKATMAK 814 (883)
Q Consensus 768 ~-------~AdvgIa~~~~~~~~~a---~~~ad~vl~~~~~~~l~~~i~~~r~~~~~ 814 (883)
- ...+.+++ +..-|.. ..-|.-...+-++..+..++.+=|+..+.
T Consensus 117 ~~~~~~~~~~~v~~gv--Gg~fd~~aG~~~rAP~w~~~~gLEWlyRl~~eP~R~~R~ 171 (177)
T TIGR00696 117 MRNHRHLKPDAVMIGV--GGSFDVFSGLVKRAPRWLMRLGLEWLYRLRMEPWRWKRM 171 (177)
T ss_pred HHHhHHhCCCcEEEEe--ceeeeecccCcCcCCHHHHHhCchHHHHhhhCcHHHHHh
Confidence 1 23455555 3322111 11222223344677888888877775443
No 297
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=25.10 E-value=1.8e+02 Score=31.80 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=50.4
Q ss_pred ecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HHcCCC---------------------CceEEEecCccch-
Q 002770 684 ISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATA-KEVGIG---------------------KEYINSSLTPQQK- 740 (883)
Q Consensus 684 l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia-~~~gi~---------------------~~~v~~~~~p~~K- 740 (883)
+-|.+|. .+.|+++|+.|.++.+++--.-..+...+ ...|++ --.+.+++-|.+.
T Consensus 160 vLdRpRH--~~lI~eiR~~GarI~Li~DGDVa~ai~~~~~~s~vD~~~GiGGAPEGVlaAaAlkclGG~mqgRL~~~~~~ 237 (321)
T PRK12388 160 TLDKPRL--SAAIEEATQLGVKVFALPDGDVAASVLTCWQDNPYDVMYTIGGAPEGVISACAVKALGGDMQAELIDFCQA 237 (321)
T ss_pred EEcCchH--HHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEEcCCChHHHHHHHHHHhCCceeEEEEccCccc
Confidence 3454444 58899999999999999943333333322 223332 0146677766551
Q ss_pred -----------HHHHHHHhh---------------cCCeEEEEcCCccCHHHHHh
Q 002770 741 -----------SEVISTLQT---------------SGHHVAMVGDGINDAPSLAL 769 (883)
Q Consensus 741 -----------~~~v~~l~~---------------~g~~v~~vGDg~ND~~al~~ 769 (883)
.+-.+..++ +|+.|.++.-|+.|-..|+-
T Consensus 238 ~g~~~~~~~~~~~e~~r~~~~GiD~~kv~~~ddLv~gddv~FaATGVTdG~lL~G 292 (321)
T PRK12388 238 KGDYTENRQIAEQERKRCKAMGVDVNRVYSLDELVRGNDILFSATGVTGGELVNG 292 (321)
T ss_pred ccccccccccCHHHHHHHHHcCCChhhEeEHHHccCCCCEEEEEeCCCCCCccCc
Confidence 111222222 35789999999999888863
No 298
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=25.04 E-value=1.3e+02 Score=35.05 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=29.0
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHc
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEV 724 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~ 724 (883)
.|+.+..+++||++|.++.++|+-+..-+..+.+-+
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 220 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYL 220 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHH
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhc
Confidence 357899999999999999999999999988888775
No 299
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.81 E-value=1.1e+02 Score=33.10 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=45.3
Q ss_pred ecCCCChhHHHHHHHHHHC-CCEE---EEEcCCcHHHHH------HHHHHcCCCCceEEE--ecCccchHHHHHHHhhc
Q 002770 684 ISDSLRHDAEHTVRSLQQK-GIKT---LLLSGDREEAVA------ATAKEVGIGKEYINS--SLTPQQKSEVISTLQTS 750 (883)
Q Consensus 684 l~D~lr~~~~~~i~~L~~~-Gi~v---~~lTGd~~~~a~------~ia~~~gi~~~~v~~--~~~p~~K~~~v~~l~~~ 750 (883)
+.++++++.++-++.+++. |+++ +++-||++.+.. ..++++||+...+.- +.++++=.+.++.|.+.
T Consensus 11 ~a~~i~~~~~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d 89 (283)
T PRK14192 11 LAKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNAN 89 (283)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567888999999999876 7653 566788887664 457889997333322 34455556677777654
No 300
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=24.42 E-value=1.7e+02 Score=24.14 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=40.9
Q ss_pred EEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcccc
Q 002770 76 LDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKR 148 (883)
Q Consensus 76 l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~ 148 (883)
+...|..|+-=.-..+++|++++.=+. ..|..|... +.+.+.+..+..||+...
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~G~~---------l~V~~d~~~----------s~~ni~~~~~~~g~~v~~ 55 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKPGEI---------LEVISDCPQ----------SINNIPIDARNHGYKVLA 55 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCCCCE---------EEEEecCch----------HHHHHHHHHHHcCCEEEE
Confidence 567899999999999999999863322 344445443 678888999999999854
No 301
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=24.42 E-value=1.4e+02 Score=32.36 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=52.6
Q ss_pred ecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHH-HcCCCC---------------------ceEEEecCccchH
Q 002770 684 ISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAK-EVGIGK---------------------EYINSSLTPQQKS 741 (883)
Q Consensus 684 l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~-~~gi~~---------------------~~v~~~~~p~~K~ 741 (883)
+-|.+|. .+.|+++|+.|.++.+++--.-..+...+. ..|++- -++.+++-|++..
T Consensus 160 vLdRpRH--~~lI~eiR~~Gari~Li~DGDV~~ai~~~~~~s~vD~~~GiGGaPEGVlaAaAlkclGG~~qgrL~~~~~~ 237 (309)
T cd01516 160 VLDRPRH--AALIEEIREAGARIKLIPDGDVAAAIATALPGSGVDVLMGIGGAPEGVLAAAALKCLGGEMQGRLLPRNEE 237 (309)
T ss_pred EEcCchH--HHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEECCCChHHHHHHHHHHhCCceeEEEECCCCHH
Confidence 3444444 588999999999999999444443433332 233320 1567788777544
Q ss_pred HHHHHHhh---------------cCCeEEEEcCCccCHHHHHh
Q 002770 742 EVISTLQT---------------SGHHVAMVGDGINDAPSLAL 769 (883)
Q Consensus 742 ~~v~~l~~---------------~g~~v~~vGDg~ND~~al~~ 769 (883)
+.-+..+. +|+.|.++.-|+.|...|+-
T Consensus 238 e~~r~~~~Gi~D~~ki~~~ddLv~gd~v~FaATGvTdG~lL~G 280 (309)
T cd01516 238 ERARAREMGITDPNKILTLDDLVRGDDVVFAATGITDGELLKG 280 (309)
T ss_pred HHHHHHHcCCCChhheeEHHHcccCCCEEEEEeCCCCCCccCC
Confidence 43332221 35679999999999888863
No 302
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=24.33 E-value=4.2e+02 Score=27.40 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHCCCEEE-EEc------------CCcHHHHHHHHHHcCCCCceEEEecC---ccc---hHHHHHHHhhcC
Q 002770 691 DAEHTVRSLQQKGIKTL-LLS------------GDREEAVAATAKEVGIGKEYINSSLT---PQQ---KSEVISTLQTSG 751 (883)
Q Consensus 691 ~~~~~i~~L~~~Gi~v~-~lT------------Gd~~~~a~~ia~~~gi~~~~v~~~~~---p~~---K~~~v~~l~~~g 751 (883)
|..-++..+++.|++++ ++| +.....++.+|+.+||+ .....++ +.. -...++.+++.|
T Consensus 9 DS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip--~~~i~~~~~~~~~~~~l~~~l~~~~~~g 86 (218)
T TIGR03679 9 DSNYALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIP--LVKIETSGEKEKEVEDLKGALKELKREG 86 (218)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCC--EEEEECCCCChHHHHHHHHHHHHHHHcC
Confidence 34445667777888874 444 34567889999999997 3433443 222 233445555557
Q ss_pred CeEEEEcCCccC
Q 002770 752 HHVAMVGDGIND 763 (883)
Q Consensus 752 ~~v~~vGDg~ND 763 (883)
...+..||-.-|
T Consensus 87 ~~~vv~G~i~sd 98 (218)
T TIGR03679 87 VEGIVTGAIASR 98 (218)
T ss_pred CCEEEECCcccH
Confidence 777777775433
No 303
>PRK13938 phosphoheptose isomerase; Provisional
Probab=24.30 E-value=1.2e+02 Score=31.08 Aligned_cols=46 Identities=9% Similarity=0.286 Sum_probs=36.3
Q ss_pred CCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHH
Q 002770 662 SNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAA 719 (883)
Q Consensus 662 ~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ 719 (883)
...+.-++.++..|. .+++.++++.+|+.|++++.+||........
T Consensus 111 ~~~~DllI~iS~SG~------------t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~ 156 (196)
T PRK13938 111 ARPGDTLFAISTSGN------------SMSVLRAAKTARELGVTVVAMTGESGGQLAE 156 (196)
T ss_pred CCCCCEEEEEcCCCC------------CHHHHHHHHHHHHCCCEEEEEeCCCCChhhh
Confidence 445566777777776 7899999999999999999999977654333
No 304
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=23.96 E-value=1e+02 Score=30.01 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=33.8
Q ss_pred CCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHH
Q 002770 663 NYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEA 716 (883)
Q Consensus 663 ~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~ 716 (883)
..+.-++.++..|. .+++.++++.+|+.|++++.+|+.....
T Consensus 78 ~~~D~~i~iS~sG~------------t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 78 QKGDVLLGISTSGN------------SKNVLKAIEAAKDKGMKTITLAGKDGGK 119 (154)
T ss_pred CCCCEEEEEcCCCC------------CHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 34556677777776 7899999999999999999999865544
No 305
>COG4996 Predicted phosphatase [General function prediction only]
Probab=23.74 E-value=5.4e+02 Score=24.49 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=42.6
Q ss_pred CCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCcc
Q 002770 687 SLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQ 738 (883)
Q Consensus 687 ~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~ 738 (883)
.++++++++++.+|+.|.-+..+|=..+..|....+.+++..-.-+--..|.
T Consensus 41 ~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePh 92 (164)
T COG4996 41 HLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPH 92 (164)
T ss_pred EEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCC
Confidence 4689999999999999999999999999999999999999743333333443
No 306
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=23.72 E-value=1.6e+02 Score=32.20 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=27.3
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCCcHHHH-HHHHHHcCC
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGDREEAV-AATAKEVGI 726 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd~~~~a-~~ia~~~gi 726 (883)
-+++...-+.|++.|.+++++|......+ ....+.++.
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~~ 100 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAGL 100 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHhh
Confidence 46777888899999999999997765543 344444443
No 307
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.70 E-value=3.7e+02 Score=25.64 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=42.0
Q ss_pred EEEEEEecCCCChhHHHHHHHHHHCCC--EEEEEcCCc---HH---HHHHHHHHcCCCCceEEEecCccchHHHHHHHhh
Q 002770 678 IIGAIAISDSLRHDAEHTVRSLQQKGI--KTLLLSGDR---EE---AVAATAKEVGIGKEYINSSLTPQQKSEVISTLQT 749 (883)
Q Consensus 678 ~lG~i~l~D~lr~~~~~~i~~L~~~Gi--~v~~lTGd~---~~---~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~ 749 (883)
++|+-++.-.--+..+++++.|+++|+ .++++-|-. .. ....-++++|++ .+|..-+|- .+++..+++
T Consensus 55 iVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~--~vF~pgt~~--~~iv~~l~~ 130 (134)
T TIGR01501 55 AILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFD--RVFAPGTPP--EVVIADLKK 130 (134)
T ss_pred EEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCC--EEECcCCCH--HHHHHHHHH
Confidence 566666665666678899999999987 345666631 11 224567889986 677544332 334444443
No 308
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=23.57 E-value=3.5e+02 Score=27.43 Aligned_cols=64 Identities=16% Similarity=0.342 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHCCCEEEEEcCCcH-----HHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEE
Q 002770 690 HDAEHTVRSLQQKGIKTLLLSGDRE-----EAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMV 757 (883)
Q Consensus 690 ~~~~~~i~~L~~~Gi~v~~lTGd~~-----~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~v 757 (883)
.+..+.++++++.|++ .+++||+. .-...+++++|+. .+.-+=-.+-.++++.+-+.|.++..+
T Consensus 75 ~~l~~~l~~~~~~g~~-~vv~G~i~sd~~~~~~e~~~~~~gl~---~~~PLW~~~~~~ll~e~~~~g~~~~iv 143 (194)
T cd01994 75 EDLKELLRKLKEEGVD-AVVFGAILSEYQRTRVERVCERLGLE---PLAPLWGRDQEELLREMIEAGFKAIII 143 (194)
T ss_pred HHHHHHHHHHHHcCCC-EEEECccccHHHHHHHHHHHHHcCCE---EEecccCCCHHHHHHHHHHcCCeEEEE
Confidence 5667777787777766 68899985 4567899999995 444343344556888888888765543
No 309
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=23.57 E-value=4.1e+02 Score=29.03 Aligned_cols=76 Identities=18% Similarity=0.339 Sum_probs=49.9
Q ss_pred CCCChhHHHHHHHHHHCC-CEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccch------------------HHHHHH
Q 002770 686 DSLRHDAEHTVRSLQQKG-IKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQK------------------SEVIST 746 (883)
Q Consensus 686 D~lr~~~~~~i~~L~~~G-i~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K------------------~~~v~~ 746 (883)
-.+-+...+.|+.+|+.| +++.++|.... ..+.+++.. .+.++..+..-++ .+-++.
T Consensus 91 PTLy~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L~~-~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~ 166 (296)
T COG0731 91 PTLYPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEELKL-PDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEI 166 (296)
T ss_pred cccccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHHhcc-CCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 456788899999999999 79999997766 445555543 2356655432221 222334
Q ss_pred Hhh--cCCeE--EEEcCCccCHH
Q 002770 747 LQT--SGHHV--AMVGDGINDAP 765 (883)
Q Consensus 747 l~~--~g~~v--~~vGDg~ND~~ 765 (883)
+++ .|..| .|+..|.||..
T Consensus 167 ~~~~~~~~~vir~tlvkg~N~~~ 189 (296)
T COG0731 167 FRSEYKGRTVIRTTLVKGINDDE 189 (296)
T ss_pred hhhcCCCcEEEEEEEeccccCCh
Confidence 444 45544 48999999977
No 310
>PRK08813 threonine dehydratase; Provisional
Probab=23.43 E-value=1.8e+02 Score=32.57 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHCCCE--EEEEc-CCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCccCHH
Q 002770 691 DAEHTVRSLQQKGIK--TLLLS-GDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAP 765 (883)
Q Consensus 691 ~~~~~i~~L~~~Gi~--v~~lT-Gd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ND~~ 765 (883)
++.-.|.++.+.|.. ++-.| |..-......|+.+|+....+...-.|+.|.+.++ ..|..|..+|++..|+.
T Consensus 67 gA~~~l~~a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~---~~GAeVv~~g~~~~~a~ 141 (349)
T PRK08813 67 GALNALLAGLERGDERPVICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVA---HWGATVRQHGNSYDEAY 141 (349)
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHH---HcCCEEEEECCCHHHHH
Confidence 456677777777754 44444 55566677888999998655555667777776665 45888888887665553
No 311
>PRK12415 fructose 1,6-bisphosphatase II; Reviewed
Probab=23.17 E-value=1.5e+02 Score=32.35 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=52.8
Q ss_pred ecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHH-HcCCC---------------------CceEEEecCccchH
Q 002770 684 ISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAK-EVGIG---------------------KEYINSSLTPQQKS 741 (883)
Q Consensus 684 l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~-~~gi~---------------------~~~v~~~~~p~~K~ 741 (883)
+-|.+|. .+.|+++|+.|.++.+++--.-..+...+. ..|++ --++.+++-|+...
T Consensus 161 vLdRpRH--~~lI~eir~~Gari~Li~DGDV~~ai~~~~~~~~vD~~~GiGGaPEGVlaAaAlkclGG~~q~rL~~~~~~ 238 (322)
T PRK12415 161 VQERERH--QDIIDRVRAKGARVKLFGDGDVGASIATALPGTGIDLFVGIGGAPEGVISAAALKCLGGEMQARLVPMNEE 238 (322)
T ss_pred EEcCchH--HHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEEcCCChHHHHHHHHHHhCCceeEEEECCCCHH
Confidence 3454444 588999999999999999433333333332 23331 01567788776544
Q ss_pred HHHHHHhh---------------cCCeEEEEcCCccCHHHHHh
Q 002770 742 EVISTLQT---------------SGHHVAMVGDGINDAPSLAL 769 (883)
Q Consensus 742 ~~v~~l~~---------------~g~~v~~vGDg~ND~~al~~ 769 (883)
+.-+..+. .|+.|.++.-|+.|...|+-
T Consensus 239 e~~r~~~~Gi~D~~~v~~~ddlv~gd~v~FaATGvTdG~ll~G 281 (322)
T PRK12415 239 EEARCREMGLEDPRQLLMLDDLVSGDDAIFSATGVSAGELLDG 281 (322)
T ss_pred HHHHHHHcCCcChhheeEHHHccCCCCEEEEEeCCCCCCCcCC
Confidence 43332221 35789999999999988863
No 312
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=23.15 E-value=1.6e+02 Score=24.57 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=18.1
Q ss_pred CCeEEEee---CCCcCCCCEEEECCCCe
Q 002770 337 DAICVEVP---TDDIRVGDSVLVLPGET 361 (883)
Q Consensus 337 dg~~~~V~---~~~l~~GDiV~v~~Ge~ 361 (883)
+|..++|. ..+++|||.|+|..|--
T Consensus 24 ~G~~~~V~~~lv~~v~~Gd~VLVHaG~A 51 (68)
T PF01455_consen 24 GGVRREVSLALVPDVKVGDYVLVHAGFA 51 (68)
T ss_dssp TTEEEEEEGTTCTSB-TT-EEEEETTEE
T ss_pred CCcEEEEEEEEeCCCCCCCEEEEecChh
Confidence 67778875 45689999999999953
No 313
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=23.03 E-value=8.7e+02 Score=25.96 Aligned_cols=94 Identities=23% Similarity=0.334 Sum_probs=60.7
Q ss_pred EEEEEEecCCCChhHHHHHHHHHHCCCEE-EEEcC-CcHHHHHHHHHHcCCCCceEEEe----------cCccchHHHHH
Q 002770 678 IIGAIAISDSLRHDAEHTVRSLQQKGIKT-LLLSG-DREEAVAATAKEVGIGKEYINSS----------LTPQQKSEVIS 745 (883)
Q Consensus 678 ~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v-~~lTG-d~~~~a~~ia~~~gi~~~~v~~~----------~~p~~K~~~v~ 745 (883)
+-|++ +-|-+-++..+..+.+++.|+.. .++|- -+......+++... ..+|+- -.+.+-.+.++
T Consensus 116 vdGlI-ipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~---gFiY~vs~~GvTG~~~~~~~~l~~~i~ 191 (259)
T PF00290_consen 116 VDGLI-IPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQAS---GFIYLVSRMGVTGSRTELPDELKEFIK 191 (259)
T ss_dssp EEEEE-ETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-S---SEEEEESSSSSSSTTSSCHHHHHHHHH
T ss_pred CCEEE-EcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCC---cEEEeeccCCCCCCcccchHHHHHHHH
Confidence 34544 56666678888889999999985 56665 45566677777642 256652 12445578888
Q ss_pred HHhhcCCeEEEEcCCccCHHHHHh----CCeeEEe
Q 002770 746 TLQTSGHHVAMVGDGINDAPSLAL----ADVGIAL 776 (883)
Q Consensus 746 ~l~~~g~~v~~vGDg~ND~~al~~----AdvgIa~ 776 (883)
.+++....-+++|=|+++....+. || |+-+
T Consensus 192 ~ik~~~~~Pv~vGFGI~~~e~~~~~~~~aD-GvIV 225 (259)
T PF00290_consen 192 RIKKHTDLPVAVGFGISTPEQAKKLAAGAD-GVIV 225 (259)
T ss_dssp HHHHTTSS-EEEESSS-SHHHHHHHHTTSS-EEEE
T ss_pred HHHhhcCcceEEecCCCCHHHHHHHHccCC-EEEE
Confidence 888888788999999998764432 33 6666
No 314
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=23.02 E-value=5e+02 Score=24.90 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=50.7
Q ss_pred cCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEc--CCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHh
Q 002770 674 EGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLS--GDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQ 748 (883)
Q Consensus 674 ~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lT--Gd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~ 748 (883)
+|. ++-+...++-- ..+.|+.+.+.|..+++.| ...+.++..++..+|-..-.-.-.++-++|.++.+.+.
T Consensus 51 ~G~-~l~l~S~R~~~---~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~ly~P~~dlsveeK~~l~~~~~ 123 (138)
T PF04312_consen 51 DGE-LLDLKSSRNMS---RSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFNAVLYTPERDLSVEEKQELAREYS 123 (138)
T ss_pred CCc-EEEEEeecCCC---HHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCcccCCCCcCCHHHHHHHHHhhC
Confidence 555 55555555544 4566778889999999998 56789999999999863111113577788999988875
No 315
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.96 E-value=2.1e+02 Score=23.50 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=40.4
Q ss_pred EEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCcccc
Q 002770 76 LDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKR 148 (883)
Q Consensus 76 l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~ 148 (883)
+...|..|+.=.-..+++|++++-= +...|..|... +.+.+.+..++.||+...
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~~G---------~~l~V~~dd~~----------s~~di~~~~~~~g~~~~~ 55 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMKPG---------DTLLVLATDPS----------TTRDIPKFCTFLGHELLA 55 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCCCC---------CEEEEEeCCCc----------hHHHHHHHHHHcCCEEEE
Confidence 5678999999999999999888532 22344444433 678899999999999754
No 316
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.82 E-value=2.8e+02 Score=30.02 Aligned_cols=44 Identities=30% Similarity=0.340 Sum_probs=25.9
Q ss_pred cCCeEEEEcCCccC----HHHHHh--CCeeEEeecCCcc--HHHHhhcCEEEeC
Q 002770 750 SGHHVAMVGDGIND----APSLAL--ADVGIALQIEAQE--NAASTAASIILLG 795 (883)
Q Consensus 750 ~g~~v~~vGDg~ND----~~al~~--AdvgIa~~~~~~~--~~a~~~ad~vl~~ 795 (883)
.|..|+.+|.+..= +.+|.. |.|-++- .... ......||+++..
T Consensus 156 ~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~h--s~T~~l~~~~~~ADIvV~A 207 (281)
T PRK14183 156 KGKDVCVVGASNIVGKPMAALLLNANATVDICH--IFTKDLKAHTKKADIVIVG 207 (281)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC--CCCcCHHHHHhhCCEEEEe
Confidence 47899999998332 234433 4555554 3222 2234678998864
No 317
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=22.77 E-value=1.1e+02 Score=30.57 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=27.1
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGDREEAVAATA 721 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia 721 (883)
.+++.++++.+++.|++++.+|+.........+
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~a 120 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLA 120 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCchHHhC
Confidence 778899999999999999999987766544443
No 318
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=22.70 E-value=2.7e+02 Score=31.32 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=62.6
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCC-cH----HHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcCCcc
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGD-RE----EAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGIN 762 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd-~~----~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~N 762 (883)
..++....+..++++||+++.=+|- |+ ..++.++++.|++ .-.+-+.-++-...++.+.+.|..+--...|.
T Consensus 56 ~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~--lkvA~V~gDd~~~~v~~~~~~g~~~~~l~~~~- 132 (362)
T PF07287_consen 56 FVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLS--LKVAVVYGDDLKDEVKELLAEGETIRPLDTGP- 132 (362)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCC--eeEEEEECccchHhHHHHHhCCCCCccCCCCC-
Confidence 4557789999999999999887754 22 3456788899997 33455556666667776666665443333333
Q ss_pred CHHHHHh-CCeeEEeecCC-ccHHHHhhcCEEEeC
Q 002770 763 DAPSLAL-ADVGIALQIEA-QENAASTAASIILLG 795 (883)
Q Consensus 763 D~~al~~-AdvgIa~~~~~-~~~~a~~~ad~vl~~ 795 (883)
+...... .--..+.-+.. =.++.++-||+|+..
T Consensus 133 ~l~~~~~~~~~a~aylGa~pI~~AL~~GADIVI~G 167 (362)
T PF07287_consen 133 PLSEWDDRIVSANAYLGAEPIVEALEAGADIVITG 167 (362)
T ss_pred CcchhccccceEEEecChHHHHHHHHcCCCEEEeC
Confidence 3333221 11222331111 123445679999975
No 319
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.67 E-value=5.3e+02 Score=27.20 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=36.9
Q ss_pred CCCChhHHHHH-HHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhhcCCeEEEEcC
Q 002770 686 DSLRHDAEHTV-RSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGD 759 (883)
Q Consensus 686 D~lr~~~~~~i-~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~~g~~v~~vGD 759 (883)
|+.-....+.+ +.+++.|+.+.+.+.+............+.+. .+.....+. ...++.+++.|..|++++.
T Consensus 16 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dg-iii~~~~~~--~~~~~~~~~~~ipvV~~~~ 87 (283)
T cd06279 16 DPVASQFLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDG-FIVYGVPRD--DPLVAALLRRGLPVVVVDQ 87 (283)
T ss_pred CccHHHHHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCE-EEEeCCCCC--hHHHHHHHHcCCCEEEEec
Confidence 33333444433 44677788877777665444444444455442 122111112 2456667777766777764
No 320
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=22.63 E-value=2.7e+02 Score=32.12 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=60.7
Q ss_pred EEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEE-c--CCcHHHHHHHHHHcCCCCceEEEecCccchHHHHH
Q 002770 669 VYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLL-S--GDREEAVAATAKEVGIGKEYINSSLTPQQKSEVIS 745 (883)
Q Consensus 669 ~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~l-T--Gd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~ 745 (883)
+|+=.++....|- ++| | .+...+..+++.|.+-+++ | |..-......|+..|+....+..+.++++|..-+.
T Consensus 87 Iy~K~E~~nPtGS--~K~--R-~A~~~~~~a~~~G~~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~ 161 (419)
T TIGR01415 87 IYYKYESVSPTGS--HKI--N-TAIAQAYYAKIEGAKRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKY 161 (419)
T ss_pred EEEEECCCCCCCC--cHH--H-HHHHHHHHHHHcCCCeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHH
Confidence 5665665545552 222 2 3556677778889875553 3 34444556678889998656666667777777778
Q ss_pred HHhhcCCeEEEEcCCccCH
Q 002770 746 TLQTSGHHVAMVGDGINDA 764 (883)
Q Consensus 746 ~l~~~g~~v~~vGDg~ND~ 764 (883)
.++..|..|..+++...|+
T Consensus 162 ~m~~~GA~Vi~~~~~~~~~ 180 (419)
T TIGR01415 162 LMELYGAEVIPSPSEFTEF 180 (419)
T ss_pred HHHHcCCEEEEECCchhhH
Confidence 8888899999999865553
No 321
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=22.52 E-value=1e+03 Score=25.97 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=20.4
Q ss_pred hhhHHHHHHhhccCCCceEEEE
Q 002770 84 GGCVARVKSVLTADDRVDSVAV 105 (883)
Q Consensus 84 ~~C~~~Ie~~l~~~~gV~~~~v 105 (883)
..|.+.+++.+++.|||.+++.
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~ 92 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRF 92 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEE
Confidence 8999999999999999998765
No 322
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=22.39 E-value=3.7e+02 Score=25.64 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=41.4
Q ss_pred eEEEEEEecCCCChhHHHHHHHHHHCCC-E-EEEEcCCc------HHHHHHHHHHcCCCCceEEEec
Q 002770 677 GIIGAIAISDSLRHDAEHTVRSLQQKGI-K-TLLLSGDR------EEAVAATAKEVGIGKEYINSSL 735 (883)
Q Consensus 677 ~~lG~i~l~D~lr~~~~~~i~~L~~~Gi-~-v~~lTGd~------~~~a~~ia~~~gi~~~~v~~~~ 735 (883)
.++|+-.+.-.-.+.+++.++.|++.|. . .+++-|.. +......++++|++ .+|..-
T Consensus 56 d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~--~vf~~~ 120 (137)
T PRK02261 56 DAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFD--RVFPPG 120 (137)
T ss_pred CEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCC--EEECcC
Confidence 3777777777888899999999999966 2 35565654 45566788889986 677533
No 323
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=22.19 E-value=9.5e+02 Score=30.27 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=42.4
Q ss_pred CCCeEEEEEecCceEEEEEEec-----CCCChhHHHHHHHHHHC-CCEEEEEcCCcHHHHHHHHHHcC
Q 002770 664 YSKSVVYVGREGEGIIGAIAIS-----DSLRHDAEHTVRSLQQK-GIKTLLLSGDREEAVAATAKEVG 725 (883)
Q Consensus 664 ~g~~~~~~a~~~~~~lG~i~l~-----D~lr~~~~~~i~~L~~~-Gi~v~~lTGd~~~~a~~ia~~~g 725 (883)
...+.+++-+||. +.....-. -.+.++..++++.|.+. +-.|+++||++...........+
T Consensus 505 a~~rll~LDyDGT-L~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~ 571 (797)
T PLN03063 505 SNNRLLILGFYGT-LTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYN 571 (797)
T ss_pred ccCeEEEEecCcc-ccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCC
Confidence 3457888888886 55321101 12567889999999755 67899999999988877665433
No 324
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.14 E-value=3.9e+02 Score=28.42 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=69.8
Q ss_pred CChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcC-CCC-ceEEEecC--------ccchHHHHHHHhh--------
Q 002770 688 LRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVG-IGK-EYINSSLT--------PQQKSEVISTLQT-------- 749 (883)
Q Consensus 688 lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~g-i~~-~~v~~~~~--------p~~K~~~v~~l~~-------- 749 (883)
+|+++.+..+.|++.+|++.+.|..-......+-++.. ..+ ..+.++.. -.-+..++..+.+
T Consensus 139 lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~~~ 218 (298)
T KOG3128|consen 139 LREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQNE 218 (298)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHHHhh
Confidence 58889999999999999999999766666666665543 211 11111110 0012223322221
Q ss_pred --------cCCeEEEEcCCccCHHHHHhC-Ce----eEEeecCCccH---HHHhhcCEEEeCCChhhHHHH
Q 002770 750 --------SGHHVAMVGDGINDAPSLALA-DV----GIALQIEAQEN---AASTAASIILLGNKLSQVVDA 804 (883)
Q Consensus 750 --------~g~~v~~vGDg~ND~~al~~A-dv----gIa~~~~~~~~---~a~~~ad~vl~~~~~~~l~~~ 804 (883)
.+..|...||.+.|+.|-..+ ++ -|..+.....+ .-++.-|+||..|....++.-
T Consensus 219 s~yf~~~~~~~nVillGdsigdl~ma~gv~~~~~iLkig~l~d~vee~~~~ymd~ydIvL~~D~tldv~~s 289 (298)
T KOG3128|consen 219 SEYFHQLAGRVNVILLGDSIGDLHMADGVPRVGHILKIGYLNDSVEEALEKYMDSYDIVLVHDETLDVANS 289 (298)
T ss_pred hHHHhhccCCceEEEeccccccchhhcCCcccccceeeecccchHHHHHHHHHhhcceEEecCcccchhHH
Confidence 256899999999999886432 22 23331122222 344678999998876666543
No 325
>PRK04980 hypothetical protein; Provisional
Probab=21.87 E-value=1.7e+02 Score=26.47 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=34.4
Q ss_pred CCcCCCCEEEEC--CCCeeeeeEEEEeece----EEee--ccccCCCceeeccCCCccccc
Q 002770 346 DDIRVGDSVLVL--PGETIPVDGRVLAGRS----VVDE--SMLSGESLPVFKEEGFTVSAG 398 (883)
Q Consensus 346 ~~l~~GDiV~v~--~Ge~IPaDg~vl~G~~----~Vde--s~LTGEs~pv~K~~g~~v~aG 398 (883)
...+|||++.|. .+.+.-|+..|++=.. .++| +..-|+|.+-.|+.=..+|.|
T Consensus 30 ~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i~f~eLte~hA~qEg~sL~elk~~i~~iYp~ 90 (102)
T PRK04980 30 SHFKPGDVLRVGTFEDDRYFCTIEVLSVSPVTFDELNEKHAEQENMTLPELKQVIAEIYPN 90 (102)
T ss_pred cCCCCCCEEEEEECCCCcEEEEEEEEEEEEEehhhCCHHHHHHhCCCHHHHHHHHHHHCCC
Confidence 468999999997 8889999999997432 1222 334555655555443334443
No 326
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=21.86 E-value=1.4e+02 Score=30.41 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=35.8
Q ss_pred CCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHH
Q 002770 662 SNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAV 717 (883)
Q Consensus 662 ~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a 717 (883)
...+.-++.++..|. .+++.++++.+|+.|.+++.+||......
T Consensus 107 ~~~gDvli~iS~SG~------------s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l 150 (196)
T PRK10886 107 GHAGDVLLAISTRGN------------SRDIVKAVEAAVTRDMTIVALTGYDGGEL 150 (196)
T ss_pred CCCCCEEEEEeCCCC------------CHHHHHHHHHHHHCCCEEEEEeCCCCChh
Confidence 455666777777776 68899999999999999999999776543
No 327
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.80 E-value=2e+02 Score=24.12 Aligned_cols=22 Identities=9% Similarity=0.228 Sum_probs=20.8
Q ss_pred ChhHHHHHHHHHHCCCEEEEEc
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLS 710 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lT 710 (883)
.+++.++++.+|+.|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 7889999999999999999999
No 328
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=21.50 E-value=2.1e+02 Score=24.79 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=38.6
Q ss_pred EEEEecC---CCChhHHHHHHHHHHCCCEEEEE-cCCcHHHHHHHHHHcCCC
Q 002770 680 GAIAISD---SLRHDAEHTVRSLQQKGIKTLLL-SGDREEAVAATAKEVGIG 727 (883)
Q Consensus 680 G~i~l~D---~lr~~~~~~i~~L~~~Gi~v~~l-TGd~~~~a~~ia~~~gi~ 727 (883)
.++.+.+ ...+-+.+..+.|+++|+++.+- ++++......-|...|++
T Consensus 3 ~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p 54 (94)
T PF03129_consen 3 VIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIP 54 (94)
T ss_dssp EEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTES
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCe
Confidence 4566666 67788889999999999998777 666777778888888885
No 329
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=21.47 E-value=47 Score=28.78 Aligned_cols=22 Identities=50% Similarity=0.859 Sum_probs=16.4
Q ss_pred eeCCCcCCCCEEEEC-CCCeeee
Q 002770 343 VPTDDIRVGDSVLVL-PGETIPV 364 (883)
Q Consensus 343 V~~~~l~~GDiV~v~-~Ge~IPa 364 (883)
+.-.+|.+||.|.|. .||.||-
T Consensus 45 i~~~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 45 IKELDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp HHHTT-BBT-EEEEEEETTTEEE
T ss_pred HHHcCCCCCCEEEEEECCCccce
Confidence 456789999999885 7999995
No 330
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=21.29 E-value=2e+02 Score=26.38 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=37.7
Q ss_pred HHHHHHHHHCCCEEEEEc-CCcH-------HHHHHHHHHcCCCCceEEE-----ecCccchHHHHHHHhhcCCeEE-EEc
Q 002770 693 EHTVRSLQQKGIKTLLLS-GDRE-------EAVAATAKEVGIGKEYINS-----SLTPQQKSEVISTLQTSGHHVA-MVG 758 (883)
Q Consensus 693 ~~~i~~L~~~Gi~v~~lT-Gd~~-------~~a~~ia~~~gi~~~~v~~-----~~~p~~K~~~v~~l~~~g~~v~-~vG 758 (883)
.+-++.|+++|++.++.- .|.+ ..-...|+++|+. .++- .+++++=..+.+.+.+....|+ ++.
T Consensus 17 ~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~--y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~ 94 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQ--YVHIPVDGGAITEEDVEAFADALESLPKPVLAHCR 94 (110)
T ss_dssp HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-E--EEE----TTT--HHHHHHHHHHHHTTTTSEEEE-S
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCe--EEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 356778999999987764 3321 1245789999995 4432 3455555666666766554454 444
Q ss_pred CCccCHHH
Q 002770 759 DGINDAPS 766 (883)
Q Consensus 759 Dg~ND~~a 766 (883)
-| +.+.+
T Consensus 95 sG-~Ra~~ 101 (110)
T PF04273_consen 95 SG-TRASA 101 (110)
T ss_dssp CS-HHHHH
T ss_pred CC-hhHHH
Confidence 44 34433
No 331
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=21.25 E-value=4.1e+02 Score=29.13 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=51.1
Q ss_pred ChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEec----Cccch-HHHHHHHhh----cCCeEEEEcC
Q 002770 689 RHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSL----TPQQK-SEVISTLQT----SGHHVAMVGD 759 (883)
Q Consensus 689 r~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~----~p~~K-~~~v~~l~~----~g~~v~~vGD 759 (883)
.+..+++++-|-..|..++++-......+..+++...++ .+-+.. -|-|= +++.-..+. +|.+|++|||
T Consensus 87 gEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~~~vP--VINa~~g~~~HPtQ~LaDl~Ti~e~~G~l~g~kv~~vGD 164 (305)
T PRK00856 87 GETLADTIRTLSAMGADAIVIRHPQSGAARLLAESSDVP--VINAGDGSHQHPTQALLDLLTIREEFGRLEGLKVAIVGD 164 (305)
T ss_pred CcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHCCCC--EEECCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence 567788999999998999999989999999999999886 444432 13222 222222222 3679999999
Q ss_pred Ccc
Q 002770 760 GIN 762 (883)
Q Consensus 760 g~N 762 (883)
+.|
T Consensus 165 ~~~ 167 (305)
T PRK00856 165 IKH 167 (305)
T ss_pred CCC
Confidence 953
No 332
>PRK07591 threonine synthase; Validated
Probab=21.20 E-value=2.5e+02 Score=32.42 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=56.4
Q ss_pred EEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEE-E-cCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHH
Q 002770 669 VYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLL-L-SGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVIST 746 (883)
Q Consensus 669 ~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~-l-TGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~ 746 (883)
+++-.++....| .|+|. ++.-.|..+++.|.+.++ . ||..-......|+..|+....+...-.|..|...
T Consensus 107 l~~K~E~~nPtG--SfKdR---ga~~~v~~A~~~g~~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~--- 178 (421)
T PRK07591 107 LYIKDDSVNPTH--SFKDR---VVSVALTAARELGFTTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVG--- 178 (421)
T ss_pred EEEEeCCCCCcc--ChHHH---HHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHH---
Confidence 556556554444 56664 556678888888876433 3 4566667788889999975444444456666544
Q ss_pred HhhcCCeEEEEcCCccCH
Q 002770 747 LQTSGHHVAMVGDGINDA 764 (883)
Q Consensus 747 l~~~g~~v~~vGDg~ND~ 764 (883)
++..|..|..++....|+
T Consensus 179 ~~~~GA~Vi~v~g~~d~a 196 (421)
T PRK07591 179 TLVYGPTLVAVDGNYDDV 196 (421)
T ss_pred HHHcCCEEEEECCCHHHH
Confidence 456688888888655444
No 333
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=20.99 E-value=6.1e+02 Score=22.99 Aligned_cols=62 Identities=15% Similarity=0.229 Sum_probs=41.9
Q ss_pred EEEecCCCChhHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCcc-chHHHHHHHhh
Q 002770 681 AIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQ-QKSEVISTLQT 749 (883)
Q Consensus 681 ~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~-~K~~~v~~l~~ 749 (883)
++.+.|.-+++..+..++|.+.|+++ ..|+. |+..+. +.|++...+. .. ++ ...++...+++
T Consensus 3 ~isv~d~~K~~~~~~a~~l~~~G~~i-~AT~g---Ta~~L~-~~Gi~~~~v~-~~-~~~g~~~i~~~i~~ 65 (112)
T cd00532 3 FLSVSDHVKAMLVDLAPKLSSDGFPL-FATGG---TSRVLA-DAGIPVRAVS-KR-HEDGEPTVDAAIAE 65 (112)
T ss_pred EEEEEcccHHHHHHHHHHHHHCCCEE-EECcH---HHHHHH-HcCCceEEEE-ec-CCCCCcHHHHHHhC
Confidence 56788888999999999999999998 47754 555554 4888633332 12 22 33456666655
No 334
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=20.98 E-value=1.5e+02 Score=28.11 Aligned_cols=38 Identities=13% Similarity=0.364 Sum_probs=28.6
Q ss_pred CCCCCeEEEEEecCceEEEEEEecCCCChhHHHHHHHHHHCCCEEEEEcC
Q 002770 662 SNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSG 711 (883)
Q Consensus 662 ~~~g~~~~~~a~~~~~~lG~i~l~D~lr~~~~~~i~~L~~~Gi~v~~lTG 711 (883)
...|..++.++..|. .+.+.++++..|++|.+++-+||
T Consensus 101 ~~~gDvli~iS~SG~------------s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 101 IRPGDVLIVISNSGN------------SPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp --TT-EEEEEESSS-------------SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCCEEEEECCCCC------------CHHHHHHHHHHHHCCCEEEEEeC
Confidence 345667777777776 68999999999999999999986
No 335
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=20.75 E-value=3.3e+02 Score=23.33 Aligned_cols=56 Identities=18% Similarity=0.099 Sum_probs=41.6
Q ss_pred EEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcCCccc
Q 002770 73 TVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAK 147 (883)
Q Consensus 73 ~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~ 147 (883)
..++...|..|+.=.-..++++++++.=. ...|..+... ..+.+....+..|++..
T Consensus 9 ~~~lD~~Gl~CP~Pll~~kk~l~~l~~G~---------~l~V~~dd~~----------~~~di~~~~~~~G~~~~ 64 (81)
T PRK00299 9 DHTLDALGLRCPEPVMMVRKTVRNMQPGE---------TLLIIADDPA----------TTRDIPSFCRFMDHELL 64 (81)
T ss_pred CeEEecCCCCCCHHHHHHHHHHHcCCCCC---------EEEEEeCCcc----------HHHHHHHHHHHcCCEEE
Confidence 35789999999999999999999985322 2333444332 56788888889999874
No 336
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.69 E-value=3.2e+02 Score=23.35 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=40.7
Q ss_pred EEEEEecCCCChhhHHHHHHhhccCCCceEEEEecCCCeEEEEecccchhhhhhhhcCCHHHHHHHHHhcC-Cccc
Q 002770 73 TVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECG-FEAK 147 (883)
Q Consensus 73 ~~~l~I~GM~C~~C~~~Ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G-~~~~ 147 (883)
..++.+.|+.|+.=+-.+.++|++++-= +...|..+... ..++|-...+..| |+..
T Consensus 5 ~~~LD~rG~~CP~Pv~~~kk~l~~m~~G---------e~LeV~~ddp~----------~~~dIp~~~~~~~~~~ll 61 (78)
T COG0425 5 DKVLDLRGLRCPGPVVETKKALAKLKPG---------EILEVIADDPA----------AKEDIPAWAKKEGGHELL 61 (78)
T ss_pred ceEEeccCCcCCccHHHHHHHHHcCCCC---------CEEEEEecCcc----------hHHHHHHHHHHcCCcEEE
Confidence 4689999999999999999999998542 33445555444 4577877777444 7653
No 337
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=20.68 E-value=1.1e+03 Score=25.71 Aligned_cols=211 Identities=14% Similarity=0.156 Sum_probs=109.3
Q ss_pred CceecCchHHhhhccCcEEEecCcccccCCceEEEEEeccCCChHHHHHHHHHh---hhccCChHHHHHHHHHHh---cC
Q 002770 524 GLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAV---EKTATHPIAKAIVNKAES---LN 597 (883)
Q Consensus 524 gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~v~~~~~~~~~~l~~~a~~---e~~s~hPi~~Ai~~~~~~---~~ 597 (883)
|=++-|+..++.|.+--..+.|...-+.+|.-.+.. ..+.+++ ....+... --..+-|.-+.+.+.+++ .|
T Consensus 37 G~iIHN~~vv~~L~~~GV~~v~~~~~v~~~~~Viir--AHGv~~~-~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~G 113 (298)
T PRK01045 37 HEIVHNRYVVERLEKKGAIFVEELDEVPDGAIVIFS--AHGVSPA-VREEAKERGLTVIDATCPLVTKVHKEVARMSREG 113 (298)
T ss_pred ecCccCHHHHHHHHHCCCEEecCcccCCCCCEEEEe--CCCCCHH-HHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCC
Confidence 567889999999988888888866555555433322 2233333 22222221 124566776666555443 23
Q ss_pred CCCCCCcCcccccCceEEEEECCEEEEecCHHHHHHHhhccCCCchhhhHHHHHhhhcccccCcCCCCCeEEEEEecCce
Q 002770 598 LTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGREGEG 677 (883)
Q Consensus 598 ~~~~~~~~~~~~~g~g~~~~~~g~~~~~Gs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~ 677 (883)
+......+...-.-.|+.+...+..+.+.+++.+.... ......+
T Consensus 114 y~vvi~G~~~HpEv~gi~g~~~~~~~vv~~~~e~~~l~--------------------------~~~~~~v--------- 158 (298)
T PRK01045 114 YEIILIGHKGHPEVEGTMGQAPGGVYLVESPEDVAKLE--------------------------VKDPDKL--------- 158 (298)
T ss_pred CEEEEEeCCCCCeeeeeccCcCCCEEEEcCHHHHhhcc--------------------------cCCCCcE---------
Confidence 32111111111112344444444444454444332110 0011122
Q ss_pred EEEEEEecCCCChhHHHHHHHHHHCCCE--------EEEEcCCcHHHHHHHHHHcCCCCceEEEecCccchHHHHHHHhh
Q 002770 678 IIGAIAISDSLRHDAEHTVRSLQQKGIK--------TLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQT 749 (883)
Q Consensus 678 ~lG~i~l~D~lr~~~~~~i~~L~~~Gi~--------v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~v~~l~~ 749 (883)
+++.=.=..+.+..+.++.|++..-. ++-.|-+++..+..+|+++..- .+.+.-....=.++.+..++
T Consensus 159 --~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~m--iVVGg~~SsNT~kL~~i~~~ 234 (298)
T PRK01045 159 --ALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLV--IVVGSKNSSNSNRLREVAEE 234 (298)
T ss_pred --EEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEE--EEECCCCCccHHHHHHHHHH
Confidence 22222223456677778888765422 3456888999999999987652 33333333333345555566
Q ss_pred cCCeEEEEcCC-ccCHHHHHhC-CeeEEe
Q 002770 750 SGHHVAMVGDG-INDAPSLALA-DVGIAL 776 (883)
Q Consensus 750 ~g~~v~~vGDg-~ND~~al~~A-dvgIa~ 776 (883)
.+..+..|.+- .-|...|+.. .|||.-
T Consensus 235 ~~~~t~~Ie~~~el~~~~l~~~~~VGita 263 (298)
T PRK01045 235 AGAPAYLIDDASEIDPEWFKGVKTVGVTA 263 (298)
T ss_pred HCCCEEEECChHHCcHHHhcCCCEEEEEe
Confidence 67667777662 3344556544 478887
No 338
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=20.62 E-value=2.2e+02 Score=31.56 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=46.8
Q ss_pred HHHHHHHHHHCCCEEEEEcC----CcHHHHHHHHHHcCCCCceEEEecCccchH-----HHHHHHhhcCCeEEEEcCC
Q 002770 692 AEHTVRSLQQKGIKTLLLSG----DREEAVAATAKEVGIGKEYINSSLTPQQKS-----EVISTLQTSGHHVAMVGDG 760 (883)
Q Consensus 692 ~~~~i~~L~~~Gi~v~~lTG----d~~~~a~~ia~~~gi~~~~v~~~~~p~~K~-----~~v~~l~~~g~~v~~vGDg 760 (883)
+...+...++.|.+.++.+| ..-......|+.+|+....+...-.|..|. .-+..++..|.+|..++..
T Consensus 52 ~~~~l~~a~~~g~~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~ 129 (331)
T PRK03910 52 LEFLLADALAQGADTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAG 129 (331)
T ss_pred HHHHHHHHHHcCCCEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCcc
Confidence 55667778888988777665 556667778899999754444444454443 3344566778889888754
No 339
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=20.52 E-value=3.2e+02 Score=31.49 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=42.8
Q ss_pred HHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCCceEEEecCcc--ch---HHHHHHHhhcCCe
Q 002770 692 AEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQ--QK---SEVISTLQTSGHH 753 (883)
Q Consensus 692 ~~~~i~~L~~~Gi~v~~lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~--~K---~~~v~~l~~~g~~ 753 (883)
..+.=++|++.|++.++..|+.......++++.++. .|+++-.++ .+ ..+.+.+++.|-.
T Consensus 63 L~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~--~V~~~~~~~~~~~~rd~~v~~~l~~~~i~ 127 (429)
T TIGR02765 63 LKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVR--TVFLHQEVGSEEKSVERLLQQALARLGIH 127 (429)
T ss_pred HHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCC--EEEEeccCCHHHHHHHHHHHHHHHhcCce
Confidence 344446778899999999999999999999999997 677765433 33 2333445555533
No 340
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=20.28 E-value=1.3e+02 Score=35.51 Aligned_cols=49 Identities=10% Similarity=0.196 Sum_probs=40.7
Q ss_pred hhhHHHHHHhhccCCCceEEEEecCCCe------------------EEEEecccchhhhhhhhcCCHHHHHHHHHh
Q 002770 84 GGCVARVKSVLTADDRVDSVAVNMLTET------------------AAIKLRTEAVEESEEVVNNVAESLGKRLME 141 (883)
Q Consensus 84 ~~C~~~Ie~~l~~~~gV~~~~v~~~~~~------------------~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~ 141 (883)
++|=|-+|..+.+++||.++.+=+..+. +.|.|||.. ++.++|.+....
T Consensus 205 gGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~---------is~~~Ll~~f~~ 271 (521)
T PRK14018 205 GGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADK---------LSLDTILQYYFR 271 (521)
T ss_pred cCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCc---------CcHHHHHHHHHH
Confidence 5899999999999999999998666552 568899988 899998877644
No 341
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=20.21 E-value=1.4e+02 Score=36.05 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=44.6
Q ss_pred eeCCCcCCCCEEEEC-CCCeee-eeEEEEeeceEEeeccccCCCceeeccCCCccccceeeecCcEEEEEEeecCccchh
Q 002770 343 VPTDDIRVGDSVLVL-PGETIP-VDGRVLAGRSVVDESMLSGESLPVFKEEGFTVSAGTINWDGPLRIEACSTGSNSMIS 420 (883)
Q Consensus 343 V~~~~l~~GDiV~v~-~Ge~IP-aDg~vl~G~~~Vdes~LTGEs~pv~K~~g~~v~aGt~~~~G~~~~~v~~~g~~T~~~ 420 (883)
|.-.||++||.|.|+ +||.|| +++++.+- =+|+..|.. .|-.--.-||.+......+....++..+.-+
T Consensus 363 I~rkdIrIGDtV~V~kAGdVIP~V~~Vv~e~--------R~~~~~~~~-~P~~CP~C~s~l~r~~~e~~~rC~n~~~C~a 433 (667)
T COG0272 363 IKRKDIRIGDTVVVRKAGDVIPQVVGVVLEK--------RPGNEKPIP-FPTHCPVCGSELVREEGEVVIRCTNGLNCPA 433 (667)
T ss_pred HHhcCCCCCCEEEEEecCCCCcceeeeeccc--------CCCCCCCCC-CCCCCCCCCCeeEeccCceeEecCCCCCChH
Confidence 456899999999986 699999 45555442 234444432 2222224566666544444555555455555
Q ss_pred hhhhhhHh
Q 002770 421 KIVSMVEE 428 (883)
Q Consensus 421 ~i~~~v~~ 428 (883)
+..+.+.+
T Consensus 434 q~~e~l~h 441 (667)
T COG0272 434 QLKERLIH 441 (667)
T ss_pred HHhhheee
Confidence 65554443
No 342
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.08 E-value=2.4e+02 Score=23.53 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=32.0
Q ss_pred EEEecCCCChhHHHHHHHHHHCCCEEEEE-cCCcHHHHHHHHHHcCCC
Q 002770 681 AIAISDSLRHDAEHTVRSLQQKGIKTLLL-SGDREEAVAATAKEVGIG 727 (883)
Q Consensus 681 ~i~l~D~lr~~~~~~i~~L~~~Gi~v~~l-TGd~~~~a~~ia~~~gi~ 727 (883)
++.+.+..++.+.+..+.|++.|+++.+. .+.+.......|+..|++
T Consensus 6 i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~ 53 (91)
T cd00859 6 VVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGAR 53 (91)
T ss_pred EEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCC
Confidence 34455666777888889999999987663 334555666666666664
No 343
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.04 E-value=2.2e+02 Score=30.91 Aligned_cols=66 Identities=23% Similarity=0.386 Sum_probs=42.5
Q ss_pred ecCCCChhHHHHHHHHHHCCCEE---EEEcCCcHHHHH------HHHHHcCCCCceEE--EecCccchHHHHHHHhh
Q 002770 684 ISDSLRHDAEHTVRSLQQKGIKT---LLLSGDREEAVA------ATAKEVGIGKEYIN--SSLTPQQKSEVISTLQT 749 (883)
Q Consensus 684 l~D~lr~~~~~~i~~L~~~Gi~v---~~lTGd~~~~a~------~ia~~~gi~~~~v~--~~~~p~~K~~~v~~l~~ 749 (883)
+.++++++.++-++.|++.|++. +++.||++.+.. ..|+++||..+.+. .+.+.++=.+.|+.|.+
T Consensus 9 iA~~i~~~ik~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 9 IAAKVKGEVATEVRALAARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNA 85 (282)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567889999999999888863 566788887664 45788999632222 11233344455555544
Done!