Query 002770
Match_columns 883
No_of_seqs 458 out of 3528
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 18:22:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002770.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1483-1486//hhsearch_pdb/002770hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j09_A COPA, copper-exporting 1.0 1 1 1036.9 49.3 713 73-876 3-719 (723)
2 3rfu_A Copper efflux ATPase; a 1.0 1 1 1012.9 61.9 647 170-871 75-734 (736)
3 3j08_A COPA, copper-exporting 1.0 1 1 923.2 45.9 632 176-876 6-641 (645)
4 1mhs_A Proton pump, plasma mem 1.0 1 1 747.1 49.9 558 276-880 140-748 (920)
5 3b8c_A ATPase 2, plasma membra 1.0 1 1 746.1 7.3 526 276-851 92-677 (885)
6 2zxe_A Na, K-ATPase alpha subu 1.0 1 1 722.7 56.8 590 247-874 105-833 (1028)
7 3ar4_A Sarcoplasmic/endoplasmi 1.0 1 1 712.6 52.2 567 275-873 87-813 (995)
8 3ixz_A Potassium-transporting 1.0 1 1 711.5 57.8 592 247-876 110-840 (1034)
9 2yj3_A Copper-transporting ATP 1.0 1 1 318.3 0.0 260 515-818 4-263 (263)
10 3a1c_A Probable copper-exporti 1.0 1 1 254.8 27.5 280 515-816 8-287 (287)
No 1
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=1036.90 Aligned_cols=713 Identities=36% Similarity=0.575 Sum_probs=631.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89999438899126999999420699920898745898089984463000123320278889999997149753223467
Q 002770 73 TVLLDVSGMMCGGCVARVKSVLTADDRVDSVAVNMLTETAAIKLRTEAVEESEEVVNNVAESLGKRLMECGFEAKRRVSG 152 (883)
Q Consensus 73 ~~~l~I~GM~C~~C~~~Ie~~L~~~~gV~~~~v~l~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~i~~~G~~~~~~~~~ 152 (883)
+..+.|+||+|++|+++||+.+++.+||.++++|+.++++.+.|++.. .+.+++.+.+++.||++...++.
T Consensus 3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~---------~~~~~i~~ai~~~Gy~~~~~~~~ 73 (723)
T 3j09_A 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKR---------IDFETIKRVIEDLGYGVVDEQAA 73 (723)
T ss_dssp CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTT---------CCHHHHHHHHHHHCCEESSCCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCC---------CCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 699985898966899999999845999538999757877999847886---------89999999998438765432111
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 76201234379999989999999999999999999999988778999974332204624666566699999989887614
Q 002770 153 TGVAENVKKWKELAKKREDLLVKSRNRVALAWTLVALCCGSHASHILHSLGIHIAHGPLWELLDNSYVKGGFALGALFGP 232 (883)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~la~~vl~~~ 232 (883)
... +. ++.++.++++++++.+.++++...+ ++ . .+. ..|+++++++|+++|+
T Consensus 74 ~~~-~~------------~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~---~~~-----~~~~~~~l~~~~~~~~ 125 (723)
T 3j09_A 74 VSA-EV------------EHLSRMKRKLYVAAFAGVLLLFLAH------FI-S---LPY-----EDFVQLLIALPAIFYS 125 (723)
T ss_dssp CCC-CC------------CCCCCSCCCSSSTTTTHHHHHHHTT------SS-C---SSS-----SCCSCCSTHHHHHHHH
T ss_pred CCH-HH------------HHHHHHHHHHHHHHHHHHHHHHHHH------HH-C---CCH-----HHHHHHHHHHHHHHHH
T ss_conf 101-16------------8899999999999999999999999------74-0---323-----7899999999999996
Q ss_pred CHHHH----HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 29999----99982999831899999999999999998806876673210358999999999999999999999999999
Q 002770 233 GRASL----MAFRKGSPNMNSLVGFGSIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVLLGRSLEERARIRASSDMNE 308 (883)
Q Consensus 233 g~~~~----~~l~~~~~nm~~Li~lg~~~a~~~s~~~~~~~~~~~~~~~f~~~~~il~~~llg~~le~~~~~ra~~~~~~ 308 (883)
|+||| +++|+|.+|||+|+++|+.+||++|++.++... ...+.||++++++++++++|+++|.+++.|+++.+++
T Consensus 126 g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~-~~~~~~~~~~~~i~~~~~ig~~le~~~~~~~~~~i~~ 204 (723)
T 3j09_A 126 GSSIFKAAFSALRRRTLNMDVMYSMGVGAAFLASVLSTAGVL-PREYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKK 204 (723)
T ss_dssp HHHHHHHTCCTTTTCSTTSCSSCSCHHHHHHHHHHHHHHTTT-TCCCCCCTTHHHHHHHHHHHHHHHHHHHTTCCCTTHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999818898299999999999999999998514-6632399999999999999999999999999999988
Q ss_pred HHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCEEEEEEEEEEECEEEEECCCCCCCCEEE
Q ss_conf 77256653089872788898877643489969996089867899999779985421189994101776024468784053
Q 002770 309 LLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLSGESLPVF 388 (883)
Q Consensus 309 l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~v~~~~l~~GDii~i~~Ge~IPaDg~vi~G~~~Vdes~LTGEs~pv~ 388 (883)
+.++.|.+++++| ||++++|++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.
T Consensus 205 l~~l~~~~a~v~r---------------~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~~VdeS~LTGES~pv~ 269 (723)
T 3j09_A 205 LVGLQAKTAVVIR---------------DGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVL 269 (723)
T ss_dssp HHHTSCSEEEEEE---------------TTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECCEEEECHHHHCCSSCEE
T ss_pred HHHCCCCEEEEEE---------------CCEEEEEEHHHCCCCCEEEECCCCEEEEEEEEEECCEEEECCCCCCCCCCEE
T ss_conf 8726997569998---------------9989998989979998999889998856799997776886000138876466
Q ss_pred CCCCCCCCCCEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 14898002430120486999998625753012446555763079883688897740137899999999999999987147
Q 002770 389 KEEGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQ 468 (883)
Q Consensus 389 K~~g~~v~aGt~v~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~~~~~d~~~~~~~~~vl~l~~~~~~~~~~~~~~ 468 (883)
|++|+.+++||+|.+|.++++|+++|.+|.+++|.+++++++.+++|+|+.+|+++.+|++++++++++++++|++...
T Consensus 270 K~~g~~v~~Gt~~~~g~~~~~v~~~g~~T~l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~~~- 348 (723)
T 3j09_A 270 KSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAH- 348 (723)
T ss_dssp ECTTCEECTTCEECSSCEEEEEEECGGGSHHHHHHHHHSSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTT-
T ss_pred ECCCCEECCCEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 3689823041697067299999984674399999999997534698389999999999999999999999999998568-
Q ss_pred CCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCEEEECCCC
Q ss_conf 65100101368999933789999998877631121110247999999999987549222172587441067299953865
Q 002770 469 IFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTG 548 (883)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~ak~gilvk~~~~le~lg~v~~i~fDKTG 548 (883)
.++...+.+++++++++|||+|++++|+++..++.+++++|+++|+++++|.+|++|++||||||
T Consensus 349 ---------------~~~~~~~~~~i~vlvia~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTG 413 (723)
T 3j09_A 349 ---------------APLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTG 413 (723)
T ss_dssp ---------------CTTCCSHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTTCEESSTTHHHHGGGCCEEEEEHHH
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHCCCEEEECCCC
T ss_conf ---------------86999999999999750267899999999999999999889389482899876249899984777
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCH
Q ss_conf 44579507999951578968999999975300699699999999895699997776710015863899998999995378
Q 002770 549 TLTEGKPAVFNVASFVYDESEILKIAAAVEKTATHPIAKAIVNKAESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTL 628 (883)
Q Consensus 549 TLT~~~~~v~~~~~~~~~~~~~l~~~~~~e~~~~hpi~~Ai~~~a~~~~~~~~~~~~~~~~~g~gi~~~~~~~~~~~G~~ 628 (883)
|||+|+|.+.++...+.++++++.+++.+|..+.||+++|+++++.+.++.......+...+|+|+.+ ..+.+|++
T Consensus 414 TLT~g~~~v~~~~~~~~~~~~~l~~aa~~e~~s~hP~~~Ai~~~a~~~~~~~~~~~~~~~~~g~g~~~----~~~~~g~~ 489 (723)
T 3j09_A 414 TLTKGKPEVTDLVPLNGDERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA----DGILVGNK 489 (723)
T ss_dssp HTSCSCCEEEEEEESSSCHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTCCCCSCCCCEEETTTEEEE----TTEEEECH
T ss_pred CCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEE----EEEEECCH
T ss_conf 55269627999980799989999999998504999542899999985499857864459966981699----99997789
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 89999851069980125678997510023469677998299999659558999993587986499999999779979999
Q 002770 629 EWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLL 708 (883)
Q Consensus 629 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~iG~i~l~D~lr~~~~~~i~~L~~~gi~~~i 708 (883)
+++.+..... .. ...+...+ ....|.+++++++++. ++|+++++|++|++++++|+.|+++|++++|
T Consensus 490 ~~~~~~~~~~--~~---~~~~~~~~-------~~~~g~~~~~va~~~~-~~G~i~i~D~~~~~~~~~i~~l~~~Gi~v~~ 556 (723)
T 3j09_A 490 RLMEDFGVAV--SN---EVELALEK-------LEREAKTAVIVARNGR-VEGIIAVSDTLKESAKPAVQELKRMGIKVGM 556 (723)
T ss_dssp HHHHHTTCCC--CH---HHHHHHHH-------HHTTTCEEEEEEETTE-EEEEEEEECCSCTTHHHHHHHHHHTTCEEEE
T ss_pred HHHHHCCCCC--CH---HHHHHHHH-------HHHCCCEEEEEEECCE-EEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 9997549986--08---99999999-------9855982899978999-9999960687525699999999977997999
Q ss_pred ECCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCEEEEEECCCCCHHHHHH
Q ss_conf 93996999999999909998649980390015999999844699389994893699988719935996149722889853
Q 002770 709 LSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTA 788 (883)
Q Consensus 709 lTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~i~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~ 788 (883)
+|||+..++..+++++|++ .++++++|++|...++.+|++ +.|+|+|||.||+|||+.||+||+| +++++.++++
T Consensus 557 ~TGd~~~~a~~ia~~lgi~--~~~~~~~P~~K~~~v~~l~~~-~~v~~vGDg~ND~~al~~A~vgiam--g~g~~~a~~~ 631 (723)
T 3j09_A 557 ITGDNWRSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAV--GSGSDVAVES 631 (723)
T ss_dssp ECSSCHHHHHHHHHHHTCS--EEECSCCTTCHHHHHHHHTTT-CCEEEEECSSTTHHHHHHSSEEEEC--CCCSCCSSCC
T ss_pred ECCCCHHHHHHHHHHCCCC--EEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCEEEEE--CCCCHHHHHH
T ss_conf 9998989999999985993--899268999999999998349-9399998982309999549987996--7875999986
Q ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 57999479933699999999999999999999999999989999985200146765349999977211358887754303
Q 002770 789 ASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLL 868 (883)
Q Consensus 789 adivl~~~~l~~i~~~i~~~R~~~~~i~qn~~~~~~~nii~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~~nsl~l 868 (883)
||++++++++.++++++++||+++++++||+.|++.||++++|+|+++++|.+|+.++|++|+++|.+||++|++||+||
T Consensus 632 AD~vl~~~~~~~i~~~i~~~r~~~~~i~~nl~~a~~~n~~~i~~a~~~~~~~~g~~l~p~~a~~~m~~ss~~vv~nslrl 711 (723)
T 3j09_A 632 GDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLL 711 (723)
T ss_dssp SSEECSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCSCCHHHHHHHHHTHHHHHHHHTTSC
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999679988999999999999999999999999999999999997565401551488999999815489999977875
Q ss_pred CCCCCCCC
Q ss_conf 56443235
Q 002770 869 QFHEFESN 876 (883)
Q Consensus 869 ~~~~~~~~ 876 (883)
+++.++.+
T Consensus 712 ~~~~~~~~ 719 (723)
T 3j09_A 712 RNYVPPIR 719 (723)
T ss_dssp CCCSCSTT
T ss_pred CCCCCCHH
T ss_conf 26798410
No 2
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=1.00 E-value=1 Score=1012.86 Aligned_cols=647 Identities=36% Similarity=0.559 Sum_probs=587.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH----HHHHCCCC
Q ss_conf 99999999999999999999998877899997433220462466656669999998988761429999----99982999
Q 002770 170 EDLLVKSRNRVALAWTLVALCCGSHASHILHSLGIHIAHGPLWELLDNSYVKGGFALGALFGPGRASL----MAFRKGSP 245 (883)
Q Consensus 170 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~la~~vl~~~g~~~~----~~l~~~~~ 245 (883)
+++.+.+++|+++++.+++++++..+.. +.. ..++.+....|+++++++|+++|+|+||| +++|+|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l~~~~~ 146 (736)
T 3rfu_A 75 SPEYLDMRRRFWIALMLTIPVVILEMGG-------HGL-KHFISGNGSSWIQLLLATPVVLWGGWPFFKRGWQSLKTGQL 146 (736)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC-------CCT-TSSCSTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6999999999999999999999999898-------764-43201207899999999999999538999999999985589
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 83189999999999999999880687---------667321035899999999999999999999999999977256653
Q 002770 246 NMNSLVGFGSIVAFLISLVSLLKPEL---------EWDASFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQ 316 (883)
Q Consensus 246 nm~~Li~lg~~~a~~~s~~~~~~~~~---------~~~~~~f~~~~~il~~~llg~~le~~~~~ra~~~~~~l~~~~~~~ 316 (883)
|||+|+++|+.+||+||++.++.++. +....||+.++++++++++|+++|.+++.|+++++++|.++.|.+
T Consensus 147 ~md~Lv~l~~~~a~~~S~~~~~~~~~~~~~~~~~~~~~~~yfe~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~ 226 (736)
T 3rfu_A 147 NMFTLIAMGIGVAWIYSMVAVLWPGVFPHAFRSQEGVVAVYFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPES 226 (736)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCGGGSCSSSSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 75999999999999999999863100442001356764308999999999999999999999999999999988339988
Q ss_pred EEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCEEEEEEEEEEECEEEEECCCCCCCCEEECCCCCCCC
Q ss_conf 08987278889887764348996999608986789999977998542118999410177602446878405314898002
Q 002770 317 SRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLSGESLPVFKEEGFTVS 396 (883)
Q Consensus 317 ~~v~~~~~~~~~~~~~~~~~dg~~~~v~~~~l~~GDii~i~~Ge~IPaDg~vi~G~~~Vdes~LTGEs~pv~K~~g~~v~ 396 (883)
++++++ ||++++|++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.|++|+.++
T Consensus 227 a~vv~~--------------dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~~VDES~LTGES~Pv~K~~gd~v~ 292 (736)
T 3rfu_A 227 AHRIKE--------------DGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIPVAKEASAKVI 292 (736)
T ss_dssp EEEEET--------------TEEEEEEETTTCCTTCEECCCSSEECCSCEEECSSCEEEECSSSTTCSSCEEECTTCEEC
T ss_pred EEEEEC--------------CCEEEEEEHHHCCCCCEEEECCCCCCCCCEEEEECCEEEEECCCCCCCCCEEECCCCCCC
T ss_conf 999952--------------998999877668989889987997515637999786676512357861427831688677
Q ss_pred CCEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 43012048699999862575301244655576307988368889774013789999999999999998714765100101
Q 002770 397 AGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLS 476 (883)
Q Consensus 397 aGt~v~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~~~~~d~~~~~~~~~vl~l~~~~~~~~~~~~~~~~~~~~~~ 476 (883)
+||+|.+|.++++|+++|.+|.+++|.+++++++.+|+|+|+.+|+++.+|+++++++++++|++|++++..
T Consensus 293 ~Gt~~~~G~~~~~v~~~G~~T~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~v~~vl~ia~~~~~~w~~~~~~-------- 364 (736)
T 3rfu_A 293 GATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALLGPQ-------- 364 (736)
T ss_dssp TTCEEESCCCCEEECCCSTTSHHHHHHHHHHHHHSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--------
T ss_pred CCEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------
T ss_conf 864861450999999841225999999999974326897999999999999999999999999999996787--------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCEEEECCCCCCCCCCEE
Q ss_conf 36899993378999999887763112111024799999999998754922217258744106729995386544579507
Q 002770 477 DMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPA 556 (883)
Q Consensus 477 ~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~ak~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~ 556 (883)
..+...+.+++++++++|||+|++++|+++.+++.+++++|+++|+++++|+++++|++|||||||||+|+|.
T Consensus 365 -------~~~~~~l~~ai~vlviacPcaL~la~p~a~~~~~~~~a~~gilvk~~~alE~l~~v~~i~fDKTGTLT~g~~~ 437 (736)
T 3rfu_A 365 -------PALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPK 437 (736)
T ss_dssp -------SSTTHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHHHHHTTEEESCHHHHHHHTSCCEEEECCBTTTBCSSCE
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHCCCCEEEEECCCCCCCCCEE
T ss_conf -------3299999998774877324278888999999999997515133233789998627999998189887589527
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCHHHHHHHHH
Q ss_conf 99995157896899999997530069969999999989569999777671001586389999899999537889999851
Q 002770 557 VFNVASFVYDESEILKIAAAVEKTATHPIAKAIVNKAESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQ 636 (883)
Q Consensus 557 v~~~~~~~~~~~~~l~~~~~~e~~~~hpi~~Ai~~~a~~~~~~~~~~~~~~~~~g~gi~~~~~~~~~~~G~~~~i~~~~~ 636 (883)
|.++...+.++++++.+++++|+.++||+++|+++++++.++......++...+|+|+.+.++++.+.+|+++++.+...
T Consensus 438 v~~i~~~~~~~~~~l~~aa~le~~s~hPla~Aiv~~a~~~~~~~~~~~~f~~~~g~gv~~~~~g~~~~~G~~~~~~~~~~ 517 (736)
T 3rfu_A 438 LTRIVTDDFVEDNALALAAALEHQSEHPLANAIVHAAKEKGLSLGSVEAFEAPTGKGVVGQVDGHHVAIGNARLMQEHGG 517 (736)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTCCCCCCCSCCCCCTTTEEEECSSSSCEEEESHHHHHHHCC
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 99998348877899999999862289928999999999659986675432024886589999998999738999987399
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 06998012567899751002346967799829999965955899999358798649999999977997999993996999
Q 002770 637 KQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEA 716 (883)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~iG~i~l~D~lr~~~~~~i~~L~~~gi~~~ilTGd~~~~ 716 (883)
.. . ...+...+ ...+|.+++++++++. ++|+++++|++|++++++|++|+++|++++|+|||+..+
T Consensus 518 ~~---~---~~~~~~~~-------~~~~G~~vl~va~d~~-~~G~i~i~D~i~~~~~~aI~~L~~~Gi~v~mlTGd~~~~ 583 (736)
T 3rfu_A 518 DN---A---PLFEKADE-------LRGKGASVMFMAVDGK-TVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRT 583 (736)
T ss_dssp CC---H---HHHHHHHH-------HHHTTCEEEEEEETTE-EEEEEEEECCBCSSHHHHHHHHHHHTCEEEEECSSCHHH
T ss_pred CH---H---HHHHHHHH-------HHHCCCEEEEEEECCE-EEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHH
T ss_conf 71---6---78999999-------9856986999987998-999998503220309999999998799499987989899
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCEEEEEECCCCCHHHHHHCCEEEECC
Q ss_conf 99999990999864998039001599999984469938999489369998871993599614972288985357999479
Q 002770 717 VAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGN 796 (883)
Q Consensus 717 a~~ia~~~gi~~~~v~~~~~p~~K~~~i~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~adivl~~~ 796 (883)
+..+++++||+ .++++++|++|..+|+.+|++|+.|+|+|||.||+|||+.||+|||| +++++.++++||++++++
T Consensus 584 a~~ia~~lgi~--~v~a~~~P~~K~~~v~~l~~~g~~V~~vGDG~ND~paL~~AdvGIAm--g~g~d~a~~~AD~vl~~~ 659 (736)
T 3rfu_A 584 AEAVAGTLGIK--KVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAM--GTGTDVAIESAGVTLLHG 659 (736)
T ss_dssp HHHHHHHHTCC--CEECSCCHHHHHHHHHHHHHHSCCEEEEECSSTTHHHHHHSSEEEEE--SSSCSHHHHHCSEEECSC
T ss_pred HHHHHHHCCCC--EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCEEEEE--CCCCHHHHHHCCEEECCC
T ss_conf 99999985998--79970699999999999996699899998985769999869977994--786599997699999269
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 933699999999999999999999999999989999985200146765349999977211358887754303564
Q 002770 797 KLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQFH 871 (883)
Q Consensus 797 ~l~~i~~~i~~~R~~~~~i~qn~~~~~~~nii~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~~nsl~l~~~ 871 (883)
++.++++++++||+++++|+||+.|+++||+++||+|+|.++|++|+.++|++|+++|++||++|++||+||+++
T Consensus 660 ~~~~i~~ai~~sr~t~~~i~qnl~~a~~yN~~~iplAag~l~p~~G~~l~P~~aa~~m~~Ssv~Vv~nslrl~~~ 734 (736)
T 3rfu_A 660 DLRGIAKARRLSESTMSNIRQNLFFAFIYNVLGVPLAAGVLYPLTGLLLSPMIAAAAMALSSVSVIINALRLKRV 734 (736)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTSSCCCCHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 878999999999999999999999999999999999998787750431329999999974399999998986266
No 3
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=923.22 Aligned_cols=632 Identities=38% Similarity=0.597 Sum_probs=566.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH----HHHHCCCCCCHHHH
Q ss_conf 99999999999999998877899997433220462466656669999998988761429999----99982999831899
Q 002770 176 SRNRVALAWTLVALCCGSHASHILHSLGIHIAHGPLWELLDNSYVKGGFALGALFGPGRASL----MAFRKGSPNMNSLV 251 (883)
Q Consensus 176 ~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~la~~vl~~~g~~~~----~~l~~~~~nm~~Li 251 (883)
+++++++++.++++++...+ ++ + .+. ..|+++++++|+++|+|+||| +++|+|.+|||+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~------~~-~---~~~-----~~~~~~~l~~~~~~~~g~~~~~~a~~~l~~~~~~md~L~ 70 (645)
T 3j08_A 6 MKRKLYVAAFAGVLLLFLAH------FI-S---LPY-----EDFVQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVMY 70 (645)
T ss_dssp SSSSSSSSSCSHHHHHHHTT------TC-C---SCC-----CSSSCCCTHHHHHHHHHHHHHHHTCCTTTTCSGGGCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHH------HH-H---CCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999999999999999998------74-3---415-----799999999999999999999999999974899928999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf 99999999999999880687667321035899999999999999999999999999977256653089872788898877
Q 002770 252 GFGSIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSAD 331 (883)
Q Consensus 252 ~lg~~~a~~~s~~~~~~~~~~~~~~~f~~~~~il~~~llg~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~ 331 (883)
++|+..||++|++.++.... ..+.||++++++++++++|+++|.+++.|+.+.++++.++.|++++++|
T Consensus 71 ~l~~~~a~~~s~~~~~~~~~-~~~~~~~~~~~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~r---------- 139 (645)
T 3j08_A 71 SMGVGAAFLASVLSTAGVLP-REYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIR---------- 139 (645)
T ss_dssp SCHHHHHHHHHHHHHHHHCC-SCSSCCCSHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEEE----------
T ss_pred HHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE----------
T ss_conf 99999999999999986335-6325999999999999999999999999999999998617999799999----------
Q ss_pred CCCCCCCEEEEEECCCCCCCCEEEECCCCEEEEEEEEEEECEEEEECCCCCCCCEEECCCCCCCCCCEEEECCCEEEEEE
Q ss_conf 64348996999608986789999977998542118999410177602446878405314898002430120486999998
Q 002770 332 NVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLSGESLPVFKEEGFTVSAGTINWDGPLRIEAC 411 (883)
Q Consensus 332 ~~~~~dg~~~~v~~~~l~~GDii~i~~Ge~IPaDg~vi~G~~~Vdes~LTGEs~pv~K~~g~~v~aGt~v~~G~~~~~v~ 411 (883)
||++++|++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.|++|+.+++||+|.+|.++++|+
T Consensus 140 -----~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~~VdeS~LTGES~Pv~K~~g~~v~~Gt~~~~g~~~~~v~ 214 (645)
T 3j08_A 140 -----DGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRAT 214 (645)
T ss_dssp -----TTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECCEEEECHHHHCCSSCEEECTTCEECTTCEECSSCEEEEEE
T ss_pred -----CCEEEEEEHHHCCCCCEEEECCCCEEEEEEEEEECCEEEECCCCCCCCCCEECCCCCEEECCEEEECCCEEEEEE
T ss_conf -----997999889997989999988999886689999886899802246998765608999741667982572999999
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHH
Q ss_conf 62575301244655576307988368889774013789999999999999998714765100101368999933789999
Q 002770 412 STGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLK 491 (883)
Q Consensus 412 ~~g~~T~~~~i~~~v~~~~~~~~~~~~~~d~~~~~~~~~vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 491 (883)
++|.+|.+++|.+++++++.+++|+|+.+|+++.+|++++++++++++++|++.... ++...+.
T Consensus 215 ~~G~~T~l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~~~~----------------~~~~~~~ 278 (645)
T 3j08_A 215 RVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA----------------PLLFAFT 278 (645)
T ss_dssp ECGGGSHHHHHHHHHSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCSC----------------SCCCTTT
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------CHHHHHH
T ss_conf 727745999999999973146985899999999999999999999999999995698----------------6999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 99887763112111024799999999998754922217258744106729995386544579507999951578968999
Q 002770 492 LSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEIL 571 (883)
Q Consensus 492 ~~i~vlvva~P~aL~la~p~a~~~~~~~~ak~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~l 571 (883)
+++++++++|||+|++++|+++..++.+++|+|+++|+++++|.+|++|++|||||||||+|+|.+.++...+.++++++
T Consensus 279 ~~i~vlvia~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~l 358 (645)
T 3j08_A 279 TLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELL 358 (645)
T ss_dssp TTHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTCCCCSSTTHHHHGGGCCEEEEEGGGTSSSSCCEEEEEEESSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHCCCEEEECCCCCCCCCCEEEEEEEECCCCHHHHH
T ss_conf 99999998736689999999999999999977937668169998627999998686665589707999981799979999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99997530069969999999989569999777671001586389999899999537889999851069980125678997
Q 002770 572 KIAAAVEKTATHPIAKAIVNKAESLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQKQGDHSDVQHLEHAV 651 (883)
Q Consensus 572 ~~~~~~e~~~~hpi~~Ai~~~a~~~~~~~~~~~~~~~~~g~gi~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~ 651 (883)
.+++.+|..+.||+++|+++++.+.+.......++...+|+|+.+ ..+.+|+++++.+..... .. ......
T Consensus 359 ~~aa~~e~~s~hPla~Aiv~~a~~~g~~~~~~~~~~~~~g~g~~~----~~v~~g~~~~~~~~~~~~--~~---~~~~~~ 429 (645)
T 3j08_A 359 RLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA----DGILVGNKRLMEDFGVAV--SN---EVELAL 429 (645)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHTTCCCCSCCCCEEETTTEEEE----TTEEEECHHHHHHTTCCC--CH---HHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEE----EEEEECCHHHHHHCCCCC--CH---HHHHHH
T ss_conf 999997515887467999999996599867865359965884699----999988799997549875--18---899999
Q ss_pred HHHCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCEE
Q ss_conf 51002346967799829999965955899999358798649999999977997999993996999999999909998649
Q 002770 652 THQSSELASPSNYSKSVVYVGREGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYI 731 (883)
Q Consensus 652 ~~~~~~~~~~~~~g~~~~~~a~~~~~~iG~i~l~D~lr~~~~~~i~~L~~~gi~~~ilTGd~~~~a~~ia~~~gi~~~~v 731 (883)
.+ ...+|.+++++++++. ++|+++++|++|++++++|++|+++|++++|+|||+..++..+++++|++ .+
T Consensus 430 ~~-------~~~~g~~~l~va~~~~-~~G~i~~~D~l~~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~lgi~--~~ 499 (645)
T 3j08_A 430 EK-------LEREAKTAVIVARNGR-VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD--LV 499 (645)
T ss_dssp HH-------HHTTTCCCEEEEETTE-EEEEEEEECCCTTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS--EE
T ss_pred HH-------HHHCCCEEEEEEECCE-EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCC--EE
T ss_conf 99-------9855983899988999-99999934876567999999999779979999088879999999983997--89
Q ss_pred EEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCEEEEEECCCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHH
Q ss_conf 98039001599999984469938999489369998871993599614972288985357999479933699999999999
Q 002770 732 NSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKAT 811 (883)
Q Consensus 732 ~~~~~p~~K~~~i~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~adivl~~~~l~~i~~~i~~~R~~ 811 (883)
+++++|++|...++.+|++ +.|+|+|||.||+||++.||+||+| +++++.++++||+++.++++..+++++++||++
T Consensus 500 ~~~~~P~~K~~~v~~l~~~-~~v~~vGDg~ND~~al~~A~vgiam--g~g~~~a~~~AD~vl~~~~~~~i~~~i~~~r~~ 576 (645)
T 3j08_A 500 IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAV--GSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKT 576 (645)
T ss_dssp ECSCCTTCHHHHHHHHTTT-CCEEEEECSSSCHHHHHHSSEEEEE--CCCSCCSSCCSSSEESSCCTTHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHC-CEEEEEECCHHHHHHHHHCCEEEEE--CCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHH
T ss_conf 9837877689999998609-9599996977689999759988994--887599998699999369988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999999998999998520014676534999997721135888775430356443235
Q 002770 812 MAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQFHEFESN 876 (883)
Q Consensus 812 ~~~i~qn~~~~~~~nii~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~~nsl~l~~~~~~~~ 876 (883)
+++++||+.|++.||++++|+|+++++|.+|+.++|++|+++|.+||++|++||+||+++.+++.
T Consensus 577 ~~~i~~nl~~a~~~N~~~i~la~~~~~~~~g~~l~p~~a~~~m~~ss~~vv~nslrl~~~~~~~~ 641 (645)
T 3j08_A 577 MSKIKQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLRNYVPPIR 641 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCSCCHHHHHHHHHTHHHHHHHHTTSCCCCSCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHH
T ss_conf 99999999999999999999999867651035338999999871516898875687616787140
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=1.00 E-value=1 Score=747.15 Aligned_cols=558 Identities=24% Similarity=0.351 Sum_probs=451.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEE
Q ss_conf 21035899999999999999999999999999977256653089872788898877643489969996089867899999
Q 002770 276 SFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVL 355 (883)
Q Consensus 276 ~~f~~~~~il~~~llg~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~v~~~~l~~GDii~ 355 (883)
.|++ +.+++++++++..++.+++.|+.+++++|.++.|.+++|+| ||++++|++++|+|||+|.
T Consensus 140 ~~~~-~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~~a~V~R---------------dG~~~~I~~~eLv~GDiV~ 203 (920)
T 1mhs_A 140 DWVD-FGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLR---------------DGTLKEIEAPEVVPGDILQ 203 (920)
T ss_dssp CSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSSCEEEC---------------SSSEEECCTTTSCTTSEEE
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE---------------CCEEEEEEHHHCCCCCEEE
T ss_conf 6899-99999999999999999999999999986335998799998---------------9989998989958897899
Q ss_pred ECCCCEEEEEEEEEEECE--EEEECCCCCCCCEEECCCCCCCCCCEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 779985421189994101--776024468784053148980024301204869999986257530124465557630798
Q 002770 356 VLPGETIPVDGRVLAGRS--VVDESMLSGESLPVFKEEGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGRE 433 (883)
Q Consensus 356 i~~Ge~IPaDg~vi~G~~--~Vdes~LTGEs~pv~K~~g~~v~aGt~v~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~ 433 (883)
|++||+|||||+|++|++ .||||+|||||.|+.|.+|+.+|+||.+.+|.++++|+++|.+|.+++|.+++++++.++
T Consensus 204 l~~Gd~VPaDg~ll~g~~~l~VDES~LTGES~PV~K~~gd~v~sGT~v~~G~~~~~V~~tG~~T~~g~I~~lv~~a~~~~ 283 (920)
T 1mhs_A 204 VEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAASGGS 283 (920)
T ss_dssp ECTTCBCSSEEEEEEESSCCEEBCTTTSSCCCCEECCSSCEECSCBCCSCCCEEEEEEECSTTCSTTTTTSSCCCCCCCC
T ss_pred ECCCCCCCCCEEEEECCCEEEEECCCCCCCCCCEEECCCCEEECCCEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 67797336656999457223202222478886469347986303766951359999999577678889988776424677
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 83688897740137899999999999999987147651001013689999337899999988776311211102479999
Q 002770 434 APIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAI 513 (883)
Q Consensus 434 ~~~~~~~d~~~~~~~~~vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~ 513 (883)
+|+|+.+++++.++++++++++++.|..|++. +..+...+.+++++++++|||+|++++|+++
T Consensus 284 ~~l~~~~~~i~~~l~~~~~~~~~i~~~~~~~~-----------------~~~~~~~l~~av~llV~aiP~aLp~~vti~l 346 (920)
T 1mhs_A 284 GHFTEVLNGIGTILLILVIFTLLIVWVSSFYR-----------------SNPIVQILEFTLAITIIGVPVGLPAVVTTTM 346 (920)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-----------------TCCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 64999999999999999999999999998846-----------------8869999999999998767603777789999
Q ss_pred HHHHHHHHHCCCEECCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECC-CCCHHHHHHHHHH-HHHCCC--CHHHHHH
Q ss_conf 99999987549222172587441067299953865445795079999515-7896899999997-530069--9699999
Q 002770 514 LVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASF-VYDESEILKIAAA-VEKTAT--HPIAKAI 589 (883)
Q Consensus 514 ~~~~~~~ak~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~-~~~~~~~l~~~~~-~e~~~~--hpi~~Ai 589 (883)
..+..+++|+|+++|++.++|+||++|+||||||||||+|+|.|.+++.. ++++++++..++. .+..+. ||++.|+
T Consensus 347 a~g~~~mak~~ilvk~~~aiE~Lg~v~vIc~DKTGTLT~n~m~v~~~~~~~g~~~~~ll~~a~l~~~~~~~~~~P~e~Al 426 (920)
T 1mhs_A 347 AVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVAGVDPEDLMLTACLAASRKKKGIDAIDKAF 426 (920)
T ss_dssp HHHHHHHHHTTCCCCCTTTHHHHHTCCEEEEETBTTTBSSCSCCCCCBCCSCCCCTHHHHHHHHSCCCSSCSCCSHHHHH
T ss_pred HHHHHHHHHCCEEEECCCHHHHHCCCCEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99999998688387057135554367689977888755553169998506998989999999985477666898589999
Q ss_pred HHHHHHCCCCCCC------CCCCCC-CCCCEEEEEEC---C--EEEEECCHHHHHHHHHCCCCCC-HH-HHHHHHHHHHC
Q ss_conf 9998956999977------767100-15863899998---9--9999537889999851069980-12-56789975100
Q 002770 590 VNKAESLNLTSPI------TRGQLA-EPGFGILGEVD---G--RLVAVGTLEWVYERFQKQGDHS-DV-QHLEHAVTHQS 655 (883)
Q Consensus 590 ~~~a~~~~~~~~~------~~~~~~-~~g~gi~~~~~---~--~~~~~G~~~~i~~~~~~~~~~~-~~-~~~~~~~~~~~ 655 (883)
++++...+..... ...... ..++++...++ | ..++||+++++.++|....... +. ....+...
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~pF~s~~k~ms~iv~~~~g~~~~~~KGape~il~~c~~~~~~~~~~~~~~~~~~~--- 503 (920)
T 1mhs_A 427 LKSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPIPEEVDQAYKNKVA--- 503 (920)
T ss_dssp HHHHHHSSSCCGGGSCCCEEEEEEEETTTTEEEEEECCSSSSCEEEEEECHHHHHHHCCCSSCCCHHHHHHHHHHHH---
T ss_pred HHHHHHCCCCHHHCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHH---
T ss_conf 99999646310101355335786116778859999996799189999087999998613567898788998999999---
Q ss_pred CCCCCCCCCCCEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCC--
Q ss_conf 23469677998299999659----558999993587986499999999779979999939969999999999099986--
Q 002770 656 SELASPSNYSKSVVYVGREG----EGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKE-- 729 (883)
Q Consensus 656 ~~~~~~~~~g~~~~~~a~~~----~~~iG~i~l~D~lr~~~~~~i~~L~~~gi~~~ilTGd~~~~a~~ia~~~gi~~~-- 729 (883)
.+..+|.++++++++. ..++|+++++||+|++++++|++|+++||+++|+|||+..+|.++|+++||...
T Consensus 504 ----~~a~~G~RvL~vA~~~~e~~l~~lGli~i~Dp~R~ea~~aI~~l~~aGI~v~MiTGD~~~TA~aIA~~lGI~~~~~ 579 (920)
T 1mhs_A 504 ----EFATRGFRSLGVARKRGEGSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIY 579 (920)
T ss_dssp ----HHHTSSCCCCEECCCSSSCSCCCCBBCCCCCCCCHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHTSSCSCC
T ss_pred ----HHHHCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCC
T ss_conf ----9986799799999832665307889999734321017999999862574499983897899999999849996546
Q ss_pred -------------------------EEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCEEEEEECCCCCHH
Q ss_conf -------------------------4998039001599999984469938999489369998871993599614972288
Q 002770 730 -------------------------YINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIALQIEAQENA 784 (883)
Q Consensus 730 -------------------------~v~~~~~p~~K~~~i~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~~~~~~ 784 (883)
.++++++|+||..+|+.||++|+.|+|+|||.||+|||++||+|||| ++|++.
T Consensus 580 ~~~~~~~~g~~~~~~~el~~~~~~~~V~arv~P~~K~~iV~~Lq~~g~~Vam~GDGvNDapaLk~AdvGIAm--g~gtd~ 657 (920)
T 1mhs_A 580 NAERLGLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAV--EGSSDA 657 (920)
T ss_dssp CSSSSSSCBCCCGGGGGGGTTTTTTSCEESCCSTHHHHHHHHHHTTTCCCEECCCCGGGHHHHHHSSEEEEE--TTSCHH
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHCEEEEEECHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCC--CCCCHH
T ss_conf 754124227655898999987751819998379999999999996799699982881009999857867405--643399
Q ss_pred HHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98535799947993369999999999999999999999999998999998520014676534999997721135888775
Q 002770 785 ASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVSN 864 (883)
Q Consensus 785 a~~~adivl~~~~l~~i~~~i~~~R~~~~~i~qn~~~~~~~nii~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~~n 864 (883)
++++||++++++++..+++++++||++++||+|++.|.+..|+....+. ..+...+|+.++|..--....+.. +-
T Consensus 658 ak~aADiVl~~~~~~~I~~ai~~gR~~~~ni~k~i~~~l~~n~~~~~~~-~~~~~~~~~~l~~~~il~~~l~~d----~~ 732 (920)
T 1mhs_A 658 ARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIFL-GLWIAILNRSLNIELVVFIAIFAD----VA 732 (920)
T ss_dssp HHHSSSEEESSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCSCCCCHHHHHHHHHHHT----TH
T ss_pred HHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHH----HH
T ss_conf 9984680776797778999999999999999998788979999999999-999999961687999999999987----77
Q ss_pred HHHCCCCCCCCCCCCC
Q ss_conf 4303564432352224
Q 002770 865 SLLLQFHEFESNKKKE 880 (883)
Q Consensus 865 sl~l~~~~~~~~~~~~ 880 (883)
++.|.+.+.+.+.+|+
T Consensus 733 ~lal~~e~~~~~~~P~ 748 (920)
T 1mhs_A 733 TLAIAYDNAPYSQTPV 748 (920)
T ss_dssp HHHCCCCCSGGGGSCC
T ss_pred HHHHCCCCCCCCCCCC
T ss_conf 6651356764345887
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=746.07 Aligned_cols=526 Identities=23% Similarity=0.318 Sum_probs=429.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEE
Q ss_conf 21035899999999999999999999999999977256653089872788898877643489969996089867899999
Q 002770 276 SFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAICVEVPTDDIRVGDSVL 355 (883)
Q Consensus 276 ~~f~~~~~il~~~llg~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~~~~v~~~~l~~GDii~ 355 (883)
.|++ .++++++++++.+++.+++.|+.+++++|.++.|.+++|+| ||++++|++++|+|||+|.
T Consensus 92 ~~~~-~~~I~~~v~i~~~l~~~qe~ka~~al~~L~~~~~~~a~V~R---------------dG~~~~I~~~~Lv~GDiV~ 155 (885)
T 3b8c_A 92 DWQD-FVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLR---------------DGKWSEQEAAILVPGDIVS 155 (885)
T ss_dssp CCTT-HHHHHHHTTTTTTTTTTTTTTTTTHHHHTTTSCSCCCCCCC---------------SSCSCCCCTTTTCTTSBCC
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE---------------CCEEEEEEHHHCCCCCEEE
T ss_conf 1889-99999999999999999999999999997334998699999---------------9989998989979897899
Q ss_pred ECCCCEEEEEEEEEEECE-EEEECCCCCCCCEEECCCCCCCCCCEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 779985421189994101-7760244687840531489800243012048699999862575301244655576307988
Q 002770 356 VLPGETIPVDGRVLAGRS-VVDESMLSGESLPVFKEEGFTVSAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREA 434 (883)
Q Consensus 356 i~~Ge~IPaDg~vi~G~~-~Vdes~LTGEs~pv~K~~g~~v~aGt~v~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~ 434 (883)
|++||+|||||+|++|++ .||||+|||||.|+.|.+|+.+|+||.|.+|.++++|+++|.+|.+++|.+++++ +.+++
T Consensus 156 l~~Gd~IPaDg~ll~g~~l~VdES~LTGES~Pv~K~~g~~v~~GT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~-~~~~~ 234 (885)
T 3b8c_A 156 IKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVG 234 (885)
T ss_dssp CCSSCCCSSCCCCCCSSCBCCCCCSTTCCSSCCCBSSCCCCCSCCCCCSCCCCCBCCSCTTTTTSTTCCCSCCS-CSCCS
T ss_pred ECCCCEEEECEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHC-CCCCC
T ss_conf 88999993035999767540034446888864583489830267599511799999975730199999999864-64468
Q ss_pred HHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 36888977401378999-99999999999987147651001013689999337899999988776311211102479999
Q 002770 435 PIQRLADAIAGPFVYSV-MTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAI 513 (883)
Q Consensus 435 ~~~~~~d~~~~~~~~~v-l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~ 513 (883)
|+|+.+++++.++++.+ +.++++.++.|++.+ ..+...+.+++++++++|||+|++++++++
T Consensus 235 ~lq~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~llv~aiP~aLp~~vti~l 297 (885)
T 3b8c_A 235 HFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQR-----------------RKYRDGIDNLLVLLIGGIPIAMPTVLSVTM 297 (885)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHHHSTTTTTTTC-----------------SCSTTHHHHHHHHTTTTCCSSTTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 499999999999999999999999999999806-----------------869999999999999970368999999999
Q ss_pred HHHHHHHHHCCCEECCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEE----CCCCCHHHHHHHHHHHHHC-CCCHHHHH
Q ss_conf 999999875492221725874410672999538654457950799995----1578968999999975300-69969999
Q 002770 514 LVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVA----SFVYDESEILKIAAAVEKT-ATHPIAKA 588 (883)
Q Consensus 514 ~~~~~~~ak~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~----~~~~~~~~~l~~~~~~e~~-~~hpi~~A 588 (883)
..+..+++|+|+++|+++++|++|++|++|||||||||+|+|+|.+.. ..++++++++..++.++.. +.||++.|
T Consensus 298 a~g~~r~ak~~ilvk~~~aiE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~ll~~aa~~~~~~~~~p~~~A 377 (885)
T 3b8c_A 298 AIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMASRVENQDAIDAA 377 (885)
T ss_dssp THHHHHHTTTSCCCSSGGGHHHHTTCCCCEEECCCCCSCCCCCCCSCCCCSSCSSTTHHHHHHHHHHHCCSSSCCSHHHH
T ss_pred HHHHHHHHHCCEEECCCHHHHHHHCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 99999997198696895188897679989987998761685279987775158999999999999997278899915899
Q ss_pred HHHHHHHC-----CCCC----CCCC--CCCCCCCCEEEEEECC--EEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 99998956-----9999----7776--7100158638999989--99995378899998510699801256789975100
Q 002770 589 IVNKAESL-----NLTS----PITR--GQLAEPGFGILGEVDG--RLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQS 655 (883)
Q Consensus 589 i~~~a~~~-----~~~~----~~~~--~~~~~~g~gi~~~~~~--~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 655 (883)
+++++.+. ++.. |... +.....+++ .+| ..+.||+++.+.++|..... ......+...+
T Consensus 378 l~~~~~~~~~~~~~~~~~~~~pF~s~~k~~sv~~~~----~~g~~~~~~KGa~e~il~~c~~~~~--~~~~~~~~~~~-- 449 (885)
T 3b8c_A 378 MVGMLADPKEARAGIREVHFLPFNPVDKRTALTYID----GSGNWHRVSKGAPEQILELAKASND--LSKKVLSIIDK-- 449 (885)
T ss_dssp HHHTTCCTTCCCCSSCCBCCCCCCTTTCCCCCBBCS----SSSCBCBCCCCSGGGTSSSSCCCST--TTTTHHHHHHH--
T ss_pred HHHHHHCHHHHHHCCCEEECCCCCCCCCEEEEEEEE----CCCCEEEEEECCHHHHHHHCCCCHH--HHHHHHHHHHH--
T ss_conf 999864636576248322013578522568999980----4896899994889999976458644--57999999999--
Q ss_pred CCCCCCCCCCCEEEEEEEC------------CCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 2346967799829999965------------9558999993587986499999999779979999939969999999999
Q 002770 656 SELASPSNYSKSVVYVGRE------------GEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKE 723 (883)
Q Consensus 656 ~~~~~~~~~g~~~~~~a~~------------~~~~iG~i~l~D~lr~~~~~~i~~L~~~gi~~~ilTGd~~~~a~~ia~~ 723 (883)
+..+|.++++++++ +..++|+++++||+|++++++|++|+++||+++|+|||+..+|.++|++
T Consensus 450 -----~a~~G~rvl~vA~~~~~~~~~~~~e~~l~~lGli~i~Dp~R~~a~~aI~~l~~aGI~v~MiTGD~~~tA~~iA~~ 524 (885)
T 3b8c_A 450 -----YAERGLRSLAVARQVVPEKTKESPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRR 524 (885)
T ss_dssp -----HTTTTCEEEEECCBCCCSSSSSCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHTTCCCEEEESSCHHHHTHHHHT
T ss_pred -----HHHCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
T ss_conf -----985798699999944664331113567579999996066612089999999976996899939986999999998
Q ss_pred CCCCCC----------------------------EEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCEEEE
Q ss_conf 099986----------------------------4998039001599999984469938999489369998871993599
Q 002770 724 VGIGKE----------------------------YINSSLTPQQKSEVISTLQTSGHHVAMVGDGINDAPSLALADVGIA 775 (883)
Q Consensus 724 ~gi~~~----------------------------~v~~~~~p~~K~~~i~~l~~~g~~v~~vGDg~ND~~al~~AdvgIa 775 (883)
+||... .++++++|+||..+|+.||++|+.|+|+|||.||+|||++||+|||
T Consensus 525 lGi~~~~~~~~~l~g~~~~~~~~~~~l~~~~~~~~v~arv~P~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdvGIA 604 (885)
T 3b8c_A 525 LGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIA 604 (885)
T ss_dssp TTCTTCCSTTSSCCBGGGGTTSCCSCHHHHHHTSCCEECCCHHHHHHHHHHHHHTTCCCCBCCCSSTTHHHHHHSSSCCC
T ss_pred HCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCEEEE
T ss_conf 09764667751445553122246357999986386898878999999999999779969997598122999986997599
Q ss_pred EECCCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 6149722889853579994799336999999999999999999999999999899999852001467653499999
Q 002770 776 LQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAAGALLPQYDFAMTPSLSG 851 (883)
Q Consensus 776 ~~~~~~~~~a~~~adivl~~~~l~~i~~~i~~~R~~~~~i~qn~~~~~~~nii~i~la~~~~~~~~g~~l~P~~aa 851 (883)
| ++|++.++++||+++.++++..+++++++||++++||+||+.|++.+|+..+...++.. ..+.+.++|+...
T Consensus 605 m--g~gtd~ak~aADivl~~~~~~~I~~ai~~gR~~~~ni~~~i~~~l~~n~~~~~~~~~~~-~~~~~~l~p~~il 677 (885)
T 3b8c_A 605 V--ADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIA-LIWEFDFSAFMVL 677 (885)
T ss_dssp C--SSSHHHHGGGCSSCCSSCSHHHHTHHHHTHHHHHHHHHHHHHHHHHHTTTTTSTTHHHH-SSCSSCSCHHHHH
T ss_pred E--CCCCHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHH
T ss_conf 5--77129999843401335766689999999999999999999999999999999999999-7038675889999
No 6
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=1.00 E-value=1 Score=722.69 Aligned_cols=590 Identities=20% Similarity=0.260 Sum_probs=453.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 31899999999999999998806876673210358999999999999999999999999999772566530898727888
Q 002770 247 MNSLVGFGSIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSES 326 (883)
Q Consensus 247 m~~Li~lg~~~a~~~s~~~~~~~~~~~~~~~f~~~~~il~~~llg~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~ 326 (883)
|..+..++++++++...+....+... ...++..++.+++++++...++.+++.|+.+.+++|.++.|.+++|+|
T Consensus 105 ~~~iL~~aa~ls~~~~~~~~~~~~~~-~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~~a~V~R----- 178 (1028)
T 2zxe_A 105 FSILLWIGAILCFLAYGIQAATEDEP-ANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIR----- 178 (1028)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCC-CCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCSEEEEEE-----
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-----
T ss_conf 99999999999999987511345666-520079998989888899999999999999999998852787269998-----
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCEEEEEEEEEEEC-EEEEECCCCCCCCEEECCCCCC----------C
Q ss_conf 9887764348996999608986789999977998542118999410-1776024468784053148980----------0
Q 002770 327 GSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGR-SVVDESMLSGESLPVFKEEGFT----------V 395 (883)
Q Consensus 327 ~~~~~~~~~~dg~~~~v~~~~l~~GDii~i~~Ge~IPaDg~vi~G~-~~Vdes~LTGEs~pv~K~~g~~----------v 395 (883)
||++++|++++|+|||+|.|++||+|||||+|++|+ +.||||+|||||.|+.|.+++. +
T Consensus 179 ----------dg~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~ll~g~~~~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~v 248 (1028)
T 2zxe_A 179 ----------DGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIA 248 (1028)
T ss_dssp ----------TTEEEEEEGGGCCTTCEEEEETTCBCCSEEEEEEEEEEEEECHHHHSCCSCEECCSSCCCSSTTTCSSEE
T ss_pred ----------CCEEEEEEHHHCCCCCEEEECCCCEEECEEEEEEECCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCEE
T ss_conf ----------9999999888978677799899798412289996085899867567887634434677888844533548
Q ss_pred CCCEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHC
Q ss_conf 24301204869999986257530124465557630798836888977401378999999999999999871476510010
Q 002770 396 SAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLL 475 (883)
Q Consensus 396 ~aGt~v~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~~~~~d~~~~~~~~~vl~l~~~~~~~~~~~~~~~~~~~~~ 475 (883)
|+||.+.+|.++++|++||.+|.+++|.+++.+++.+++|+|+.+++++.++++++++++++.|+++++.+.
T Consensus 249 ~~GT~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~t~lq~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-------- 320 (1028)
T 2zxe_A 249 FFSTNCVEGTARGVVVYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGY-------- 320 (1028)
T ss_dssp CTTCEEEEEEEEEEEEECGGGSHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred EECCEEECCEEEEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------
T ss_conf 737469701699999984514398899986037887889289999999999999999999999999997367--------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCEEEECCCCCCCCCCE
Q ss_conf 13689999337899999988776311211102479999999999875492221725874410672999538654457950
Q 002770 476 SDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKP 555 (883)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~ak~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~ 555 (883)
.+...+.+++++++++|||+|++++|+++..+..+++++|+++|+++++|+||++|+||||||||||+|+|
T Consensus 321 ---------~~~~~~~~~i~llv~~iP~~Lp~~vti~l~~~~~~mak~~ilvk~~~avE~Lg~v~~Ic~DKTGTLT~n~m 391 (1028)
T 2zxe_A 321 ---------SWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRM 391 (1028)
T ss_dssp ---------CHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTTEEESSTTHHHHHHHCCEEEECCCCCCBCSSC
T ss_pred ---------CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHCCCEEEECCCCCCCCCCEE
T ss_conf ---------69999999999999974741799999999999999855891644456766414762995168888887738
Q ss_pred EEEEEECCC-------C-----------CH--HHHHHHHHHHH------HC----------CCCHHHHHHHHHHHHCCCC
Q ss_conf 799995157-------8-----------96--89999999753------00----------6996999999998956999
Q 002770 556 AVFNVASFV-------Y-----------DE--SEILKIAAAVE------KT----------ATHPIAKAIVNKAESLNLT 599 (883)
Q Consensus 556 ~v~~~~~~~-------~-----------~~--~~~l~~~~~~e------~~----------~~hpi~~Ai~~~a~~~~~~ 599 (883)
+|.+++..+ . ++ .+++..++.+. .. ..+|.+.|++++++..+..
T Consensus 392 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~alc~~~~~~~~~~~hp~~~~~~~gdp~E~Al~~~a~~~~~~ 471 (1028)
T 2zxe_A 392 TVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGS 471 (1028)
T ss_dssp EEEEEEETTEEEECCCCTTCCSCCCCSSCHHHHHHHHHHHHSCCCEECTTCTTSCGGGSCEESCHHHHHHHHHHHHHHSC
T ss_pred EEEEEEECCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHCCC
T ss_conf 99999989846513677776554446677899999999986578765047777766453007894099999999995898
Q ss_pred -------CCCCCCCCCCCCCEEEEEE-------CC--EEEEECCHHHHHHHHHCCCCCCHHHHHHH-HHHHHCCCCCCCC
Q ss_conf -------9777671001586389999-------89--99995378899998510699801256789-9751002346967
Q 002770 600 -------SPITRGQLAEPGFGILGEV-------DG--RLVAVGTLEWVYERFQKQGDHSDVQHLEH-AVTHQSSELASPS 662 (883)
Q Consensus 600 -------~~~~~~~~~~~g~gi~~~~-------~~--~~~~~G~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 662 (883)
.+......+.+.+.....+ ++ ..++||+++.+.++|...........+.+ ....+......+.
T Consensus 472 ~~~~~~~~~~~~~~pF~s~rk~msvi~~~~~~~~~~~~~~~KGA~e~il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a 551 (1028)
T 2zxe_A 472 VQGMRDRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELG 551 (1028)
T ss_dssp HHHHHHHSCEEEEECCCTTTCEEEEEEECSCTTTCCEEEEEEECHHHHHTTEEEECBTTBCCBCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 88988748267870447666647999940578887179999388289998745653389721288899999999999998
Q ss_pred CCCCEEEEEEE-----------------------CCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
Q ss_conf 79982999996-----------------------5955899999358798649999999977997999993996999999
Q 002770 663 NYSKSVVYVGR-----------------------EGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAA 719 (883)
Q Consensus 663 ~~g~~~~~~a~-----------------------~~~~~iG~i~l~D~lr~~~~~~i~~L~~~gi~~~ilTGd~~~~a~~ 719 (883)
.+|.+++++++ ++.+++|+++++|++|++++++|++|+++||+++|+|||+..++..
T Consensus 552 ~~G~RvL~~A~~~l~~~~~~~~~~~~~~~~~~~e~~l~~lG~i~i~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~ 631 (1028)
T 2zxe_A 552 GLGERVLGFCHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKA 631 (1028)
T ss_dssp HTTCEEEEEEEEECCSTTSCTTCCCCTTTTCSCCSSEEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHH
T ss_pred HCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf 55997999998746822134201246245555543809986511578998448999999998699799988997799999
Q ss_pred HHHHCCCCCC---------------------------------------------------EEEEECCCCCHHHHHHHHH
Q ss_conf 9999099986---------------------------------------------------4998039001599999984
Q 002770 720 TAKEVGIGKE---------------------------------------------------YINSSLTPQQKSEVISTLQ 748 (883)
Q Consensus 720 ia~~~gi~~~---------------------------------------------------~v~~~~~p~~K~~~i~~l~ 748 (883)
+|+++||... .++++++|+||..+++.+|
T Consensus 632 ia~~lgi~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~vi~G~~l~~~~~~~l~~~~~~~~~~v~ar~~P~~K~~iV~~lq 711 (1028)
T 2zxe_A 632 IAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQ 711 (1028)
T ss_dssp HHHHHTSSCTTCCCHHHHHHHTTCCGGGSCGGGCCEEEEEHHHHTTCCHHHHHHHHHHCSEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCEEEEECHHHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHH
T ss_conf 99986988788336777776418632221555662699880885647999999998627967999858889999999999
Q ss_pred HCCCEEEEECCCCCCHHHHHHCCEEEEEECC-CCCHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4699389994893699988719935996149-722889853579994799336999999999999999999999999999
Q 002770 749 TSGHHVAMVGDGINDAPSLALADVGIALQIE-AQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNV 827 (883)
Q Consensus 749 ~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~-~~~~~a~~~adivl~~~~l~~i~~~i~~~R~~~~~i~qn~~~~~~~ni 827 (883)
+.|+.|+|+|||.||+|||++||+|||| + +|++.++++||+++.++++.+|++++++||++++|+++|+.|.+.+|+
T Consensus 712 ~~g~~V~~iGDG~ND~paLk~AdvGIAm--g~~gtd~ak~aAD~Vl~~~~~~~I~~~i~~gR~i~~ni~k~i~~~l~~n~ 789 (1028)
T 2zxe_A 712 RQGAIVAVTGDGVNDSPALKKADIGVAM--GISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNI 789 (1028)
T ss_dssp HTTCCEEEEECSGGGHHHHHHSSEEEEE--SSSCCHHHHHHCSEEETTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HCCCEEEEECCCCCHHHHHHHCCCEEEE--CCCCCHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6899899985885339999868911996--77658889985489955798779999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 89999985200146765349999977211358887754303564432
Q 002770 828 VAIPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQFHEFE 874 (883)
Q Consensus 828 i~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~~nsl~l~~~~~~ 874 (883)
..+...+...+..+..+++|+.- ....-+...+-++.|.+++++
T Consensus 790 ~~~~~~~~~~~~~~~~~l~~~qi---l~inl~~d~~pa~al~~e~~~ 833 (1028)
T 2zxe_A 790 PEITPFLVFIIGNVPLPLGTVTI---LCIDLGTDMVPAISLAYEQAE 833 (1028)
T ss_dssp HHHHHHHHHHHHCCCCSSCHHHH---HHHHTTTTHHHHHHGGGCCCS
T ss_pred HHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999766644579999---999999999999986028661
No 7
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=1.00 E-value=1 Score=712.55 Aligned_cols=567 Identities=21% Similarity=0.269 Sum_probs=436.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCE--EEEEECCCCCCCC
Q ss_conf 32103589999999999999999999999999997725665308987278889887764348996--9996089867899
Q 002770 275 ASFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSESGSSADNVLCSDAI--CVEVPTDDIRVGD 352 (883)
Q Consensus 275 ~~~f~~~~~il~~~llg~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~dg~--~~~v~~~~l~~GD 352 (883)
..|++..++++ ++++...+..+++.|+.+.+++|.++.|.+++|+| ||. .++|++++|+|||
T Consensus 87 ~~~~~~~~i~~-~~~~~~~i~~~qe~~a~~al~~L~~~~~~~a~V~R---------------~g~~~~~~I~~~~lv~GD 150 (995)
T 3ar4_A 87 TAFVEPFVILL-ILIANAIVGVWQERNAENAIEALKEYEPEMGKVYR---------------ADRKSVQRIKARDIVPGD 150 (995)
T ss_dssp SSSHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHGGGSCSEEEEEB---------------TTCSSCEEEEGGGCCTTC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE---------------CCCCEEEEEEHHHCCCCC
T ss_conf 34787688667-88999999999999999999998710897389993---------------798647997899987787
Q ss_pred EEEECCCCEEEEEEEEEEE---CEEEEECCCCCCCCEEECCCC-------------CCCCCCEEEECCCEEEEEEEECCC
Q ss_conf 9997799854211899941---017760244687840531489-------------800243012048699999862575
Q 002770 353 SVLVLPGETIPVDGRVLAG---RSVVDESMLSGESLPVFKEEG-------------FTVSAGTINWDGPLRIEACSTGSN 416 (883)
Q Consensus 353 ii~i~~Ge~IPaDg~vi~G---~~~Vdes~LTGEs~pv~K~~g-------------~~v~aGt~v~~G~~~~~v~~~g~~ 416 (883)
+|.|++||+|||||+|+++ ++.||||+|||||.|+.|.++ +.+|+||.+.+|.++++|++||.+
T Consensus 151 iV~l~~Gd~IPaD~~ll~~~s~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~v~~GT~v~~G~~~~~V~~tG~~ 230 (995)
T 3ar4_A 151 IVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVS 230 (995)
T ss_dssp EEEEETTCBCCSEEEEEEECSSCEEEECHHHHCCCSCEEECCSCCCCTTCCGGGCTTEECTTCEEEECEEEEEEEECGGG
T ss_pred EEEECCCCCCCCCEEEEEEEECEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCEEECCEEEEEEEECCCC
T ss_conf 89988978435448999885043999825246887633400456677666755545467618789844589999976722
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 30124465557630798836888977401378999999999999999871476510010136899993378999999887
Q 002770 417 SMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLLSDMAGPNGNPLLLSLKLSVDV 496 (883)
Q Consensus 417 T~~~~i~~~v~~~~~~~~~~~~~~d~~~~~~~~~vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~v 496 (883)
|.+++|.+++++++.+++|+|+.+|+++.++++++++++++++++|+......... .++...+...+..++++
T Consensus 231 T~~g~i~~~~~~~~~~~tplq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ai~l 303 (995)
T 3ar4_A 231 TEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHG-------GSWIRGAIYYFKIAVAL 303 (995)
T ss_dssp SHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGSCSSS-------SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CHHHHHHHHHHHHHHHH
T ss_conf 19899999732578789938999999999999999999999999999874143346-------40799999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCC------------
Q ss_conf 76311211102479999999999875492221725874410672999538654457950799995157------------
Q 002770 497 LVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFV------------ 564 (883)
Q Consensus 497 lvva~P~aL~la~p~a~~~~~~~~ak~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~------------ 564 (883)
++++|||+|++++|+++..+..+++++|+++|+++++|+||++|+||||||||||+|+|+|.++...+
T Consensus 304 ~v~aiP~~Lp~~vt~~la~~~~~ma~~~~lvr~~~~iE~Lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~ 383 (995)
T 3ar4_A 304 AVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEF 383 (995)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHHHHHHTTEEESCTTHHHHHHTCCEEEEESTTTTBCCCCEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCEE
T ss_conf 99866760489999999999998441784861341555503833997658887665856999998347556765543025
Q ss_pred ------CCH----------------HHHHH--HHHHHHH--------------CCCCHHHHHHHHHHHHCCC-CCCCC--
Q ss_conf ------896----------------89999--9997530--------------0699699999999895699-99777--
Q 002770 565 ------YDE----------------SEILK--IAAAVEK--------------TATHPIAKAIVNKAESLNL-TSPIT-- 603 (883)
Q Consensus 565 ------~~~----------------~~~l~--~~~~~e~--------------~~~hpi~~Ai~~~a~~~~~-~~~~~-- 603 (883)
+++ ..+.. .+.++.. ...+|.+.|++.++++.++ .....
T Consensus 384 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~alc~~~~~~~~~~~~~~~~~g~p~E~Al~~~a~~~g~~~~~~~~i 463 (995)
T 3ar4_A 384 SITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNL 463 (995)
T ss_dssp EECCSSSSSCCCEEETTEECCGGGCHHHHHHHHHHHHSCCCEEEEETTTTEEEEESCHHHHHHHHHHHHHCTTCCCCTTS
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 40477768863101366434444558999999999874888056568898325547964799999999839964100013
Q ss_pred --------------------CCCCCCCCCEEEEEE----C-------CEEEEECCHHHHHHHHHCCCCCCHH---H-HHH
Q ss_conf --------------------671001586389999----8-------9999953788999985106998012---5-678
Q 002770 604 --------------------RGQLAEPGFGILGEV----D-------GRLVAVGTLEWVYERFQKQGDHSDV---Q-HLE 648 (883)
Q Consensus 604 --------------------~~~~~~~g~gi~~~~----~-------~~~~~~G~~~~i~~~~~~~~~~~~~---~-~~~ 648 (883)
..+++.+.+.....+ + ...+.||+++.+.++|......... . ...
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~pF~s~rk~msvi~~~~~g~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~~~ 543 (995)
T 3ar4_A 464 SKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVK 543 (995)
T ss_dssp CTTTSTTHHHHHHHHHEEEEEEEEEETTTTEEEEEEEESSCCSCSCCCEEEEEECHHHHHHTEEEEEETTEEEECCHHHH
T ss_pred CCCCCCCCCHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHCCHHHCCCCCCCCCHHHH
T ss_conf 42010121015566417457774048888756999834898766644499975887999985405442897324999999
Q ss_pred HHHHHHCCCCCCC--CCCCCEEEEEEEC----------------------CCEEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 9975100234696--7799829999965----------------------955899999358798649999999977997
Q 002770 649 HAVTHQSSELASP--SNYSKSVVYVGRE----------------------GEGIIGAIAISDSLRHDAEHTVRSLQQKGI 704 (883)
Q Consensus 649 ~~~~~~~~~~~~~--~~~g~~~~~~a~~----------------------~~~~iG~i~l~D~lr~~~~~~i~~L~~~gi 704 (883)
+... .....+ ..+|.+++.+|+. +.+++|+++++|++|++++++|+.|+++||
T Consensus 544 ~~~~---~~~~~~~~a~~GlRvLa~A~k~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~i~D~lr~~~~~~I~~l~~~Gi 620 (995)
T 3ar4_A 544 EKIL---SVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGI 620 (995)
T ss_dssp HHHH---HHHHHHHHSTTCCEEEEEEEESSCCCGGGCCTTCGGGHHHHTCSEEEEEEEEEECCBCTTHHHHHHHHHHTTC
T ss_pred HHHH---HHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 9999---9999877630561488999983476511122234024455306948999985258896669999999998699
Q ss_pred EEEEECCCCHHHHHHHHHHCCCCCC-----------------------------EEEEECCCCCHHHHHHHHHHCCCEEE
Q ss_conf 9999939969999999999099986-----------------------------49980390015999999844699389
Q 002770 705 KTLLLSGDREEAVAATAKEVGIGKE-----------------------------YINSSLTPQQKSEVISTLQTSGHHVA 755 (883)
Q Consensus 705 ~~~ilTGd~~~~a~~ia~~~gi~~~-----------------------------~v~~~~~p~~K~~~i~~l~~~g~~v~ 755 (883)
+++|+|||+..++..+|+++||... .++++++|+||..+|+.+|++|+.|+
T Consensus 621 ~v~miTGD~~~ta~~ia~~lgi~~~~~~i~~~~~~g~~~~~l~~~~~~~~~~~~~v~~r~~P~~K~~~v~~l~~~g~~v~ 700 (995)
T 3ar4_A 621 RVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA 700 (995)
T ss_dssp EEEEEESSCHHHHHHHHHHHTSSCTTCCCTTTEEEHHHHHTSCHHHHHHHHHHCCEEESCCSSHHHHHHHHHHTTTCCEE
T ss_pred EEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHCCCEEE
T ss_conf 89998999789999999983967788753534898366462899999998753738997089999999999997799799
Q ss_pred EECCCCCCHHHHHHCCEEEEEECCCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 9948936999887199359961497228898535799947993369999999999999999999999999998999998-
Q 002770 756 MVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNVVAIPIAA- 834 (883)
Q Consensus 756 ~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~adivl~~~~l~~i~~~i~~~R~~~~~i~qn~~~~~~~nii~i~la~- 834 (883)
|+|||.||+|||++||+|||| ++|++.++++||+++.++++..+++++++||++++||+||+.|.+.+|+..+...+
T Consensus 701 ~~GDG~ND~~alk~Advgiam--g~g~~~ak~aAd~vl~~~~~~~i~~~i~~GR~~~~~i~k~i~~~l~~Ni~~~~~~~~ 778 (995)
T 3ar4_A 701 MTGDGVNDAPALKKAEIGIAM--GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFL 778 (995)
T ss_dssp EEECSGGGHHHHHHSTEEEEE--TTSCHHHHHTCSEEETTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHCCEEEEE--CCCCHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 983881449999878967996--788999997388997778778999999998999999999999999999999999999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 520014676534999997721135888775430356443
Q 002770 835 GALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQFHEF 873 (883)
Q Consensus 835 ~~~~~~~g~~l~P~~aa~~m~~ssl~v~~nsl~l~~~~~ 873 (883)
+.++ .+..++.|+. .....-+...+-++.|.+.++
T Consensus 779 ~~~~-g~~~pl~~~q---il~~nl~~d~~p~l~l~~~~~ 813 (995)
T 3ar4_A 779 TAAL-GLPEALIPVQ---LLWVNLVTDGLPATALGFNPP 813 (995)
T ss_dssp HHHT-TCCCSSCHHH---HHHHHHTTTHHHHHHHTTCCC
T ss_pred HHHH-CCCCHHHHHH---HHHHHHHHHHHHHHHHCCCCC
T ss_conf 9998-4762578999---999999998877776306777
No 8
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=1.00 E-value=1 Score=711.46 Aligned_cols=592 Identities=20% Similarity=0.263 Sum_probs=462.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 31899999999999999998806876673210358999999999999999999999999999772566530898727888
Q 002770 247 MNSLVGFGSIVAFLISLVSLLKPELEWDASFFEEPVMLLGFVLLGRSLEERARIRASSDMNELLSLVSTQSRLVITSSES 326 (883)
Q Consensus 247 m~~Li~lg~~~a~~~s~~~~~~~~~~~~~~~f~~~~~il~~~llg~~le~~~~~ra~~~~~~l~~~~~~~~~v~~~~~~~ 326 (883)
|..++.++++++++...+....+... ...++..++.+++++++...+..+++.|+.+.+++|.++.|++++|+|
T Consensus 110 ~~~il~~aa~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~~a~ViR----- 183 (1034)
T 3ixz_A 110 LQCLMWVAAAICLIAFAIQASEGDLT-TDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIR----- 183 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-----
T ss_conf 89999999999999998740347776-544205642430132279999999999999999997624897359999-----
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCEEEEEEEEEEEC-EEEEECCCCCCCCEEECCCC----------CCC
Q ss_conf 9887764348996999608986789999977998542118999410-17760244687840531489----------800
Q 002770 327 GSSADNVLCSDAICVEVPTDDIRVGDSVLVLPGETIPVDGRVLAGR-SVVDESMLSGESLPVFKEEG----------FTV 395 (883)
Q Consensus 327 ~~~~~~~~~~dg~~~~v~~~~l~~GDii~i~~Ge~IPaDg~vi~G~-~~Vdes~LTGEs~pv~K~~g----------~~v 395 (883)
||++++|++++|+|||+|.|++||+|||||+|++|. +.||||+|||||.|+.|.++ +.+
T Consensus 184 ----------dG~~~~I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~~~l~VdES~LTGES~pv~K~~~~~~~~~~~~~n~~ 253 (1034)
T 3ixz_A 184 ----------DGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIA 253 (1034)
T ss_pred ----------CCEEEEEEHHHCCCCCEEEECCCCEECCCEEEEEECCCEEEECCCCCCCCCEECCCCCCCCCCCCCCCCE
T ss_conf ----------9989998889879885899857964358769997088058833667887776655777665632344512
Q ss_pred CCCEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHC
Q ss_conf 24301204869999986257530124465557630798836888977401378999999999999999871476510010
Q 002770 396 SAGTINWDGPLRIEACSTGSNSMISKIVSMVEEAQGREAPIQRLADAIAGPFVYSVMTLSAATFAFWYYIGSQIFPDVLL 475 (883)
Q Consensus 396 ~aGt~v~~G~~~~~v~~~g~~T~~~~i~~~v~~~~~~~~~~~~~~d~~~~~~~~~vl~l~~~~~~~~~~~~~~~~~~~~~ 475 (883)
|+||.+.+|.++++|++||.+|.+|+|.+++..++.+++|+|+.++++..++..++++++++.|++|++.+
T Consensus 254 f~GT~v~~G~~~~vVv~tG~~T~~GkI~~~~~~~~~~~tpl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------- 324 (1034)
T 3ixz_A 254 FFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCIG--------- 324 (1034)
T ss_pred ECCEEEEEECCEEEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_conf 20406986042499996025437408998620356678918999999999999999999999999999964---------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCEEEECCCCCCCCCCE
Q ss_conf 13689999337899999988776311211102479999999999875492221725874410672999538654457950
Q 002770 476 SDMAGPNGNPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKP 555 (883)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~i~vlvva~P~aL~la~p~a~~~~~~~~ak~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~ 555 (883)
..+...+.+++++++++|||+|++++++++..+..+++++|+++|+++++|+||++++||||||||||+|+|
T Consensus 325 --------~~~~~~~~~~i~l~v~~iPe~Lp~~vti~la~~~~rmak~~~lvr~l~avE~LG~v~~IcsDKTGTLT~n~m 396 (1034)
T 3ixz_A 325 --------YTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRM 396 (1034)
T ss_pred --------CHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHCCCCEEECCCCCCCCCCEE
T ss_conf --------129999999999988202665089999999999998733882864767888615872997289787236837
Q ss_pred EEEEEECCCC-----------------CH---HHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHCCCC
Q ss_conf 7999951578-----------------96---899999997530----------------06996999999998956999
Q 002770 556 AVFNVASFVY-----------------DE---SEILKIAAAVEK----------------TATHPIAKAIVNKAESLNLT 599 (883)
Q Consensus 556 ~v~~~~~~~~-----------------~~---~~~l~~~~~~e~----------------~~~hpi~~Ai~~~a~~~~~~ 599 (883)
+|.+++..+. .. ..++..++.+.. ...+|.+.|++.++...+.+
T Consensus 397 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lc~~a~~~~~~~~~~~~~~~~~gdp~e~All~~~~~~~~~ 476 (1034)
T 3ixz_A 397 TVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGN 476 (1034)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCC
T ss_conf 99999977951225676665665567677899999999887162665357677766574355492599999999985788
Q ss_pred C-------CCCCCCCCCCCCEEEEE---E-C---C--EEEEECCHHHHHHHHHCCCCCCHHHHHHHH-HHHHCCCCCCCC
Q ss_conf 9-------77767100158638999---9-8---9--999953788999985106998012567899-751002346967
Q 002770 600 S-------PITRGQLAEPGFGILGE---V-D---G--RLVAVGTLEWVYERFQKQGDHSDVQHLEHA-VTHQSSELASPS 662 (883)
Q Consensus 600 ~-------~~~~~~~~~~g~gi~~~---~-~---~--~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 662 (883)
. +........+.+..... . + + ..++||+++.+.++|...........+.+. ...+........
T Consensus 477 ~~~~~~~~~~~~~~pF~s~rk~m~~v~~~~~~~~~~~~l~~KGApe~il~~c~~~~~~~~~~~l~~~~~~~~~~~~~~~a 556 (1034)
T 3ixz_A 477 AMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLG 556 (1034)
T ss_pred HHHHHHHCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHH
T ss_conf 68889748606995035777268999983378886089999688499999737755289640199999999999999987
Q ss_pred CCCCEEEEEEE-----------------------CCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
Q ss_conf 79982999996-----------------------5955899999358798649999999977997999993996999999
Q 002770 663 NYSKSVVYVGR-----------------------EGEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAA 719 (883)
Q Consensus 663 ~~g~~~~~~a~-----------------------~~~~~iG~i~l~D~lr~~~~~~i~~L~~~gi~~~ilTGd~~~~a~~ 719 (883)
..|.+++.+++ ++++|+|+++++||+|++++++|++|+++||+++|+|||+..++..
T Consensus 557 ~~G~RvLa~A~~~l~~~~~~~~~~~~~~~~~~~e~~l~~lGlv~i~Dp~r~~~~~aI~~l~~aGI~vvmiTGd~~~tA~~ 636 (1034)
T 3ixz_A 557 GLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKA 636 (1034)
T ss_pred HCCCHHHEEEEEECCHHHCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
T ss_conf 14758236867855800043211245344302224867988871368870659999999998699699996997799999
Q ss_pred HHHHCCCCC---------------------------------------------------CEEEEECCCCCHHHHHHHHH
Q ss_conf 999909998---------------------------------------------------64998039001599999984
Q 002770 720 TAKEVGIGK---------------------------------------------------EYINSSLTPQQKSEVISTLQ 748 (883)
Q Consensus 720 ia~~~gi~~---------------------------------------------------~~v~~~~~p~~K~~~i~~l~ 748 (883)
+|+++|+.. ..++++++|++|..+++.+|
T Consensus 637 ia~~lgi~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~v~ar~~P~~K~~iv~~lq 716 (1034)
T 3ixz_A 637 IAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQ 716 (1034)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHCCCCHHCCCCCCCEEEEECHHHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHH
T ss_conf 99986999887247888887617650002544543167716766638999999998737826999669899999999999
Q ss_pred HCCCEEEEECCCCCCHHHHHHCCEEEEEECC-CCCHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4699389994893699988719935996149-722889853579994799336999999999999999999999999999
Q 002770 749 TSGHHVAMVGDGINDAPSLALADVGIALQIE-AQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQNLSWAVAYNV 827 (883)
Q Consensus 749 ~~g~~v~~vGDg~ND~~al~~AdvgIa~~~~-~~~~~a~~~adivl~~~~l~~i~~~i~~~R~~~~~i~qn~~~~~~~ni 827 (883)
+.|+.|+|+|||.||+|||+.||+|||| + ++++.++++||+++.++++.+++.++++||++++|+++++.|.+.+|+
T Consensus 717 ~~g~~V~a~GDG~ND~~mLk~A~vGIAM--g~ng~d~aK~aAD~Vl~~~~~~gI~~ai~~GR~i~~ni~k~i~~~l~~ni 794 (1034)
T 3ixz_A 717 RLGAIVAVTGDGVNDSPALKKADIGVAM--GIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNI 794 (1034)
T ss_pred HCCCEEEEECCCHHHHHHHHHCCEEEEE--CCCCCHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7699999987957769999978932980--77567999985499966688339999999988999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 8999998520014676534999997721135888775430356443235
Q 002770 828 VAIPIAAGALLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQFHEFESN 876 (883)
Q Consensus 828 i~i~la~~~~~~~~g~~l~P~~aa~~m~~ssl~v~~nsl~l~~~~~~~~ 876 (883)
..+...+...+ +|+ ..|+.+...+....+...+-++.|.+++++.+
T Consensus 795 ~~~~~~~~~~~--~~~-~~pl~~~qiL~inl~~d~~palal~~e~~~~~ 840 (1034)
T 3ixz_A 795 PELTPYLIYIT--VSV-PLPLGCITILFIELCTDIFPSVSLAYEKAESD 840 (1034)
T ss_pred HHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999999999--821-46689999999999988888888516889732
No 9
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=1.00 E-value=1 Score=318.31 Aligned_cols=260 Identities=32% Similarity=0.496 Sum_probs=234.3
Q ss_pred HHHHHHHHCCCEECCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999875492221725874410672999538654457950799995157896899999997530069969999999989
Q 002770 515 VGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTATHPIAKAIVNKAE 594 (883)
Q Consensus 515 ~~~~~~ak~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~l~~~~~~e~~~~hpi~~Ai~~~a~ 594 (883)
.++++++|+||++|+++++|.+++++++|||||||||+|+|.+.++. ++++++.+++++|..+.||+++|+..++.
T Consensus 4 ~a~~~~~~~gil~k~~~~le~l~~i~~v~fDktGTLT~g~~~v~~~~----~~~~~l~~~~~~e~~s~hp~a~ai~~~~~ 79 (263)
T 2yj3_A 4 SLYEKMLHKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI----GDSLSLAYAASVEALSSHPIAKAIVKYAK 79 (263)
Q ss_pred HCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEC
Q ss_conf 56999977767100158638999989999953788999985106998012567899751002346967799829999965
Q 002770 595 SLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGRE 674 (883)
Q Consensus 595 ~~~~~~~~~~~~~~~~g~gi~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~ 674 (883)
..++..+....+...+|.|+...+++..+..|+++ .+.+ ++++++
T Consensus 80 ~~g~~~~~~~~~~~~~G~g~~~~~~~~~~~~G~~~----------------------------------~~~~-~~~~~~ 124 (263)
T 2yj3_A 80 EQGVKILEVKDFKEISGIGVRGKISDKIIEVKKAE----------------------------------NNND-IAVYIN 124 (263)
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCEE
Q ss_conf 95589999935879864999999997799799999399699999999990999864998039001599999984469938
Q 002770 675 GEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHV 754 (883)
Q Consensus 675 ~~~~iG~i~l~D~lr~~~~~~i~~L~~~gi~~~ilTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~i~~l~~~g~~v 754 (883)
+. +.|.+.+.|+++|++.++++.|++.|++++|+|||+...+..+++++|+. .+|..+.|++|...++.++..++.+
T Consensus 125 ~~-~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~--~~f~~~~p~~k~~~~~~l~~~~~~~ 201 (263)
T 2yj3_A 125 GE-PIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQ--EYYSNLSPEDKVRIIEKLKQNGNKV 201 (263)
Q ss_pred EEECCCCCCHHHHHHCCEEEEEECCCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9994893699988719935996149722889853579994799336999999999999999999
Q 002770 755 AMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVYQN 818 (883)
Q Consensus 755 ~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~adivl~~~~l~~i~~~i~~~R~~~~~i~qn 818 (883)
+||||+.||+++++.|++|+++ +++++.+.+.+|++++++++..++.++.++|+++++|+||
T Consensus 202 ~~VGD~~~D~~aa~~Agv~va~--g~~~~~~~~~ad~v~~~~~l~~l~~~l~~~r~~~~~i~~n 263 (263)
T 2yj3_A 202 LMIGDGVNDAAALALADVSVAM--GNGVDISKNVADIILVSNDIGTLLGLIKNRKRLSNAIPSN 263 (263)
No 10
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=1.00 E-value=1 Score=254.76 Aligned_cols=280 Identities=35% Similarity=0.529 Sum_probs=237.7
Q ss_pred HHHHHHHHCCCEECCCHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999875492221725874410672999538654457950799995157896899999997530069969999999989
Q 002770 515 VGTSLGAKQGLLIRGGDVLERLARIDYLALDKTGTLTEGKPAVFNVASFVYDESEILKIAAAVEKTATHPIAKAIVNKAE 594 (883)
Q Consensus 515 ~~~~~~ak~gilvk~~~~le~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~l~~~~~~e~~~~hpi~~Ai~~~a~ 594 (883)
.+.++++|+||++|+++++|.++++++++||||||||.+.+.+.++.....++++++.+++++|..+.||++.++...+.
T Consensus 8 ~~~~~~~~~gilik~~~~le~l~~i~~viFD~dGTL~ds~~~~~~~~~~~~~~~~~l~~~~~~e~~s~hp~~~a~~~~~~ 87 (287)
T 3a1c_A 8 HGSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAAIAERRSEHPIAEAIVKKAL 87 (287)
T ss_dssp ------CCCCEEECSTTHHHHHHHCCEEEEECCCCCBCSCCEEEEEEESSSCHHHHHHHHHHHTTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEECCHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 15789987997996808998853699999968998828977999998179999999999999752179979999999998
Q ss_pred HCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEC
Q ss_conf 56999977767100158638999989999953788999985106998012567899751002346967799829999965
Q 002770 595 SLNLTSPITRGQLAEPGFGILGEVDGRLVAVGTLEWVYERFQKQGDHSDVQHLEHAVTHQSSELASPSNYSKSVVYVGRE 674 (883)
Q Consensus 595 ~~~~~~~~~~~~~~~~g~gi~~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~ 674 (883)
..++.......+....|.++.. ..+.+|+++++.+..... +.......+.+ ...+.++++++.+
T Consensus 88 ~~g~~~~~~~~~~~~~G~~~~~----~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~----------~~~g~~~i~~~~d 151 (287)
T 3a1c_A 88 EHGIELGEPEKVEVIAGEGVVA----DGILVGNKRLMEDFGVAV--SNEVELALEKL----------EREAKTAVIVARN 151 (287)
T ss_dssp HTTCCCCCCSCEEEETTTEEEE----TTEEEECHHHHHHTTCCC--CHHHHHHHHHH----------HHTTCEEEEEEET
T ss_pred HCCCCCCCCCCCEEECCCCEEE----EEEEECCHHHHHHCCCCC--CHHHHHHHHHH----------HHCCCEEEEEEEC
T ss_conf 6599855554414624887288----999988999998659975--07789999998----------7479759999999
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCEE
Q ss_conf 95589999935879864999999997799799999399699999999990999864998039001599999984469938
Q 002770 675 GEGIIGAIAISDSLRHDAEHTVRSLQQKGIKTLLLSGDREEAVAATAKEVGIGKEYINSSLTPQQKSEVISTLQTSGHHV 754 (883)
Q Consensus 675 ~~~~iG~i~l~D~lr~~~~~~i~~L~~~gi~~~ilTGd~~~~a~~ia~~~gi~~~~v~~~~~p~~K~~~i~~l~~~g~~v 754 (883)
+. +.+.+...++++|++.++++.|++.|+++.++||++...+..+.+.+|+. .+|..+.|+.|...++.++.. +.+
T Consensus 152 ~~-~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~--~~f~~i~~~~K~~~~~~l~~~-~~~ 227 (287)
T 3a1c_A 152 GR-VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVV 227 (287)
T ss_dssp TE-EEEEEEEECCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS--EEECSCCTTCHHHHHHHHTTT-CCE
T ss_pred CE-EEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHHHHCC-CEE
T ss_conf 98-99999954536141899999999779859999098989999999980981--311005817799999998258-839
Q ss_pred EEECCCCCCHHHHHHCCEEEEEECCCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99948936999887199359961497228898535799947993369999999999999999
Q 002770 755 AMVGDGINDAPSLALADVGIALQIEAQENAASTAASIILLGNKLSQVVDALDLAKATMAKVY 816 (883)
Q Consensus 755 ~~vGDg~ND~~al~~AdvgIa~~~~~~~~~a~~~adivl~~~~l~~i~~~i~~~R~~~~~i~ 816 (883)
+||||+.||++|.+.|++++++ +++.+..+..+|+++.++++..+..++..+|+++++|+
T Consensus 228 ~~vGDs~~Di~~a~~ag~~v~~--~~~~~~~~~~ad~v~~~~~~~~l~~~l~~~~~~~~~i~ 287 (287)
T 3a1c_A 228 AFVGDGINDAPALAQADLGIAV--GSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287 (287)
T ss_dssp EEEECTTTCHHHHHHSSEEEEE--CCCSCCSSCCSSEEESSSCTHHHHHHHHTTC-------
T ss_pred EEEECCHHHHHHHHHCCEEEEE--CCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9997977789999978952996--78877889629999947998999999999999998509
Done!