BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002771
(882 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 198/771 (25%), Positives = 322/771 (41%), Gaps = 146/771 (18%)
Query: 75 SWDGVTCDMVTGQVIGLDLSCSWLHGSISSNSSLFFLPRLQKLNLGSNDFNY-SKISSGF 133
S G C + + LDLS + L G +++ +SL L+ LN+ SN ++ K+S G
Sbjct: 92 SVSGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148
Query: 134 XXXXXXXXXXXXXXNFTGSIPPSLGNLTQLVYLDLSNNSFIGE--IPNMFTNQ-SKLSYL 190
L L LDLS NS G + + ++ +L +L
Sbjct: 149 -------------------------KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183
Query: 191 NFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVP 250
GN+++G + V NL + + N+ IP + ++L+ +D N+LSG
Sbjct: 184 AISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFS 240
Query: 251 SSVYELVNLTRLDLSSNKLSGTVELYDFAXXXXXXXXXXXXXXXXXXXXXXXXXXFLNLS 310
++ L L++SSN+ G +
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIP------------------------------------ 264
Query: 311 RLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQN-FLR 369
P+ LK+ L++L L+EN+ G +P ++ TL+ LDLS N F
Sbjct: 265 ------------PLPLKS---LQYLSLAENKFTGEIPDFLSGA-CDTLTGLDLSGNHFYG 308
Query: 370 SIKRLPWKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEIP-SSFCNLSSIQYLE 428
++ + ++S+N +GE+P + + ++ L+
Sbjct: 309 AVPPF-------------------FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349
Query: 429 MSNNSFSGQIPQCLVN--STVKFLDLRMNNFQG-IIPQTYAKDCN-LTFLKLNGNKLEGP 484
+S N FSG++P+ L N +++ LDL NNF G I+P N L L L N G
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 485 LPPSLINCFSLHVIDVGNNNLSGEIPQCFGN-SALKVFDMRMNRFNGSIPQMFAKSCDLR 543
+PP+L NC L + + N LSG IP G+ S L+ + +N G IPQ L
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 544 SLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGP 603
+L L+ N L G + L NC L + + NN + P W+ L L +L L +N F G
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 604 IGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSY 663
I L LDL+ N G +P F+ N + + +Y+ + N
Sbjct: 530 I--PAELGDCRSLIWLDLNTNLFNGTIPAAM---FKQSGKIAANFIAGK-RYVYIKNDGM 583
Query: 664 YA-CYESI-ILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNN 721
C+ + +L +GI + L+ +++S + G S+ L++S+N
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 722 LTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLE---------- 771
L+G IP + ++ L L+L N + G IP ++ L+ L++L+LS N+L+
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 772 --------------GPVPRGTQFNTFQNDSYAGNPGLCGFPLSESCDMDEA 808
GP+P QF TF + NPGLCG+PL CD A
Sbjct: 704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNA 753
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 153/531 (28%), Positives = 222/531 (41%), Gaps = 76/531 (14%)
Query: 242 HNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAXXXXXXXXXXXXXXXXXXXXXX 301
++ ++GSV S +LT LDLS N LSG V
Sbjct: 86 NSHINGSV-SGFKCSASLTSLDLSRNSLSGPV-------------------TTLTSLGSC 125
Query: 302 XXXXFLNLSRLGLSACKISKFPVILKTQLQ---LEWLDLSENQIHG-RVPGWMWDVGIHT 357
FLN+S L FP + L+ LE LDLS N I G V GW+ G
Sbjct: 126 SGLKFLNVSSNTL------DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 358 LSYLDLSQNFLR---SIKRLPWKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEI 414
L +L +S N + + R + + IS N L+G+
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239
Query: 415 PSSFCNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCN-LTF 473
+ + ++ L +S+N F G IP + S +++L L N F G IP + C+ LT
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 474 LKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQ--CFGNSALKVFDMRMNRFNGS 531
L L+GN G +PP +C L + + +NN SGE+P LKV D+ N F+G
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 532 IPQMFAK-SCDLRSLNLNGNQLEGPLSPSLINCR----YLEVLDIGNNHINDTFPYWLEI 586
+P+ S L +L+L+ N GP+ P+L C+ L+ L + NN P L
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 587 LPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGEN 646
EL L L N G I + SKLR L L N L G +P +
Sbjct: 417 CSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIPQELM----------- 463
Query: 647 NSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLERVLTIFTT---IDLSSNRFQGGIP 703
Y E++IL + ++ L+ T I LS+NR G IP
Sbjct: 464 ----------------YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 704 AIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQM 754
+G+L +L L +S+N+ +G IP+ L + L LDL++N G IP M
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 110/385 (28%), Positives = 178/385 (46%), Gaps = 45/385 (11%)
Query: 429 MSNNSFSGQIPQCLVNSTVKFLDLRMNNFQG-IIPQTYAKDCN-LTFLKLNGNKLEGPLP 486
+SN+ +G + ++++ LDL N+ G + T C+ L FL ++ N L+ P
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 487 PS-LINCFSLHVIDVGNNNLSGEIPQCF----GNSALKVFDMRMNRFNGSIPQMFAKSCD 541
S + SL V+D+ N++SG + G LK + N+ +G + ++ +
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN 201
Query: 542 LRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFW 601
L L+++ N + P L +C L+ LDI N ++ F + EL++L + SN+F
Sbjct: 202 LEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 602 GPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYL--------------NNFRAMIHGENN 647
GPI P L+ L L+ N+ TG +P +L N+F +
Sbjct: 261 GPI----PPLPLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 648 SVTVEVKYLSLLNSSYYACYESIILTMKGIDL----------QLERVLTIFT----TIDL 693
S ++ N+ +L M+G+ + +L LT + T+DL
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 694 SSNRFQGGI-PAIV-GKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIP 751
SSN F G I P + N+L+ L + +N TG IP +L+N +EL SL LS N L G IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 752 MQMASLKSLSVLNLSHNQLEGPVPR 776
+ SL L L L N LEG +P+
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQ 460
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 673 TMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLN---ISHNNLTGGIPSS 729
T G+ + ++V T+IDLSS G A+ L SL GL +S++++ G + S
Sbjct: 41 TFDGVTCRDDKV----TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SG 95
Query: 730 LANLTELESLDLSSNKLVGQIP--MQMASLKSLSVLNLSHNQLE--GPVPRGTQFNTFQN 785
L SLDLS N L G + + S L LN+S N L+ G V G + N+ +
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155
Query: 786 DSYAGN----PGLCGFPLSESC 803
+ N + G+ LS+ C
Sbjct: 156 LDLSANSISGANVVGWVLSDGC 177
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 198/771 (25%), Positives = 320/771 (41%), Gaps = 146/771 (18%)
Query: 75 SWDGVTCDMVTGQVIGLDLSCSWLHGSISSNSSLFFLPRLQKLNLGSNDFNY-SKISSGF 133
S G C + + LDLS + L G +++ +SL L+ LN+ SN ++ K+S G
Sbjct: 89 SVSGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 145
Query: 134 XXXXXXXXXXXXXXNFTGSIPPSLGNLTQLVYLDLSNNSFIGE--IPNMFTNQ-SKLSYL 190
L L LDLS NS G + + ++ +L +L
Sbjct: 146 -------------------------KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 180
Query: 191 NFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVP 250
GN+++G + V NL + + N+ IP + ++L+ +D N+LSG
Sbjct: 181 AISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFS 237
Query: 251 SSVYELVNLTRLDLSSNKLSGTVELYDFAXXXXXXXXXXXXXXXXXXXXXXXXXXFLNLS 310
++ L L++SSN+ G +
Sbjct: 238 RAISTCTELKLLNISSNQFVGPIP------------------------------------ 261
Query: 311 RLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQN-FLR 369
P+ LK+ L++L L+EN+ G +P ++ TL+ LDLS N F
Sbjct: 262 ------------PLPLKS---LQYLSLAENKFTGEIPDFLSGA-CDTLTGLDLSGNHFYG 305
Query: 370 SIKRLPWKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEIP-SSFCNLSSIQYLE 428
++ + ++S+N +GE+P + + ++ L+
Sbjct: 306 AVPPF-------------------FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 346
Query: 429 MSNNSFSGQIPQCLVNSTVKFL--DLRMNNFQG-IIPQTYAKDCN-LTFLKLNGNKLEGP 484
+S N FSG++P+ L N + L DL NNF G I+P N L L L N G
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 485 LPPSLINCFSLHVIDVGNNNLSGEIPQCFGN-SALKVFDMRMNRFNGSIPQMFAKSCDLR 543
+PP+L NC L + + N LSG IP G+ S L+ + +N G IPQ L
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 544 SLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGP 603
+L L+ N L G + L NC L + + NN + P W+ L L +L L +N F G
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 604 IGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSY 663
I L LDL+ N G +P F+ N + + +Y+ + N
Sbjct: 527 I--PAELGDCRSLIWLDLNTNLFNGTIPAAM---FKQSGKIAANFIAGK-RYVYIKNDGM 580
Query: 664 YA-CYESI-ILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNN 721
C+ + +L +GI + L+ +++S + G S+ L++S+N
Sbjct: 581 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 722 LTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLE---------- 771
L+G IP + ++ L L+L N + G IP ++ L+ L++L+LS N+L+
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 772 --------------GPVPRGTQFNTFQNDSYAGNPGLCGFPLSESCDMDEA 808
GP+P QF TF + NPGLCG+PL CD A
Sbjct: 701 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNA 750
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 153/531 (28%), Positives = 222/531 (41%), Gaps = 76/531 (14%)
Query: 242 HNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAXXXXXXXXXXXXXXXXXXXXXX 301
++ ++GSV S +LT LDLS N LSG V
Sbjct: 83 NSHINGSV-SGFKCSASLTSLDLSRNSLSGPV-------------------TTLTSLGSC 122
Query: 302 XXXXFLNLSRLGLSACKISKFPVILKTQLQ---LEWLDLSENQIHG-RVPGWMWDVGIHT 357
FLN+S L FP + L+ LE LDLS N I G V GW+ G
Sbjct: 123 SGLKFLNVSSNTL------DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 176
Query: 358 LSYLDLSQNFLR---SIKRLPWKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEI 414
L +L +S N + + R + + IS N L+G+
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 236
Query: 415 PSSFCNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCN-LTF 473
+ + ++ L +S+N F G IP + S +++L L N F G IP + C+ LT
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTG 295
Query: 474 LKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQ--CFGNSALKVFDMRMNRFNGS 531
L L+GN G +PP +C L + + +NN SGE+P LKV D+ N F+G
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 355
Query: 532 IPQMFAK-SCDLRSLNLNGNQLEGPLSPSLINCR----YLEVLDIGNNHINDTFPYWLEI 586
+P+ S L +L+L+ N GP+ P+L C+ L+ L + NN P L
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 587 LPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGEN 646
EL L L N G I + SKLR L L N L G +P +
Sbjct: 414 CSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIPQELM----------- 460
Query: 647 NSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLERVLTIFTT---IDLSSNRFQGGIP 703
Y E++IL + ++ L+ T I LS+NR G IP
Sbjct: 461 ----------------YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 704 AIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQM 754
+G+L +L L +S+N+ +G IP+ L + L LDL++N G IP M
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 110/385 (28%), Positives = 178/385 (46%), Gaps = 45/385 (11%)
Query: 429 MSNNSFSGQIPQCLVNSTVKFLDLRMNNFQG-IIPQTYAKDCN-LTFLKLNGNKLEGPLP 486
+SN+ +G + ++++ LDL N+ G + T C+ L FL ++ N L+ P
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 487 PS-LINCFSLHVIDVGNNNLSGEIPQCF----GNSALKVFDMRMNRFNGSIPQMFAKSCD 541
S + SL V+D+ N++SG + G LK + N+ +G + ++ +
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN 198
Query: 542 LRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFW 601
L L+++ N + P L +C L+ LDI N ++ F + EL++L + SN+F
Sbjct: 199 LEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 602 GPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYL--------------NNFRAMIHGENN 647
GPI P L+ L L+ N+ TG +P +L N+F +
Sbjct: 258 GPI----PPLPLKSLQYLSLAENKFTGEIPD-FLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 648 SVTVEVKYLSLLNSSYYACYESIILTMKGIDL----------QLERVLTIFT----TIDL 693
S ++ N+ +L M+G+ + +L LT + T+DL
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 694 SSNRFQGGI-PAIV-GKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIP 751
SSN F G I P + N+L+ L + +N TG IP +L+N +EL SL LS N L G IP
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Query: 752 MQMASLKSLSVLNLSHNQLEGPVPR 776
+ SL L L L N LEG +P+
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQ 457
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 673 TMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLN---ISHNNLTGGIPSS 729
T G+ + ++V T+IDLSS G A+ L SL GL +S++++ G + S
Sbjct: 38 TFDGVTCRDDKV----TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SG 92
Query: 730 LANLTELESLDLSSNKLVGQIP--MQMASLKSLSVLNLSHNQLE--GPVPRGTQFNTFQN 785
L SLDLS N L G + + S L LN+S N L+ G V G + N+ +
Sbjct: 93 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 152
Query: 786 DSYAGN----PGLCGFPLSESC 803
+ N + G+ LS+ C
Sbjct: 153 LDLSANSISGANVVGWVLSDGC 174
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 108/254 (42%), Gaps = 43/254 (16%)
Query: 26 KLCSQEQSSALLQFKQLFSFAKTSSSQCDGYQQSYPKMKYWKEDADCCS-SWDGVTCDMV 84
+LC+ + ALLQ K+ T SS W DCC+ +W GV CD
Sbjct: 1 ELCNPQDKQALLQIKKDLGNPTTLSS--------------WLPTTDCCNRTWLGVLCDTD 46
Query: 85 TG--QVIGLDLSCSWLHGSISSNSSLFFLPRLQKLNLGSNDFNYSKISSGFXXXXXXXXX 142
T +V LDLS L SSL LP L L +G
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--------------------- 85
Query: 143 XXXXXNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIP 202
N G IPP++ LTQL YL +++ + G IP+ + L L+F N L+G +P
Sbjct: 86 ---INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 203 SSVGELANLATVYLYFNSLKGTIPSRIFSLTSL-KQVDFRHNQLSGSVPSSVYELVNLTR 261
S+ L NL + N + G IP S + L + N+L+G +P + L NL
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201
Query: 262 LDLSSNKLSGTVEL 275
+DLS N L G +
Sbjct: 202 VDLSRNMLEGDASV 215
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 110/276 (39%), Gaps = 53/276 (19%)
Query: 525 MNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWL 584
+N G IP AK L L + + G + L + L LD N ++ T P +
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 585 EILPELRVLILRSNRFWGPIGNTKTRAPFSKLRI-LDLSHNQLTGVLPTRYLNNFRAMIH 643
LP L + NR G I ++ FSKL + +S N+LTG +P + N
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDS--YGSFSKLFTSMTISRNRLTGKIPPTFAN------- 196
Query: 644 GENNSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIP 703
LN ++ +DLS N +G
Sbjct: 197 ---------------LNLAF---------------------------VDLSRNMLEGDAS 214
Query: 704 AIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVL 763
+ G + + ++++ N+L + + L LDL +N++ G +P + LK L L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 764 NLSHNQLEGPVPRGTQFNTFQNDSYAGNPGLCGFPL 799
N+S N L G +P+G F +YA N LCG PL
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 106/223 (47%), Gaps = 10/223 (4%)
Query: 414 IPSSFCNLSSIQYLEMSN-NSFSGQIPQCLVNST-VKFLDLRMNNFQGIIPQTYAKDCNL 471
IPSS NL + +L + N+ G IP + T + +L + N G IP ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 472 TFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVF---DMRMNRF 528
L + N L G LPPS+ + +L I N +SG IP +G S K+F + NR
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRL 186
Query: 529 NGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILP 588
G IP FA + +L ++L+ N LEG S + + + + + N + + +
Sbjct: 187 TGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK 244
Query: 589 ELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLP 631
L L LR+NR +G + T+ F L L++S N L G +P
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIP 285
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 95/242 (39%), Gaps = 47/242 (19%)
Query: 306 FLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQ 365
+LN +G + P + QL +L ++ + G +P ++ I TL LD S
Sbjct: 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ--IKTLVTLDFSY 134
Query: 366 NFLRSIKRLPWKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEIPSSFCNLSSI- 424
N L +L N + + N ++G IP S+ + S +
Sbjct: 135 NALSGTLPPSISSLPN------------------LVGITFDGNRISGAIPDSYGSFSKLF 176
Query: 425 QYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCN-------------- 470
+ +S N +G+IP N + F+DL N +G + D N
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 471 ---------LTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVF 521
L L L N++ G LP L LH ++V NNL GEIPQ GN L+ F
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN--LQRF 293
Query: 522 DM 523
D+
Sbjct: 294 DV 295
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 26/162 (16%)
Query: 88 VIGLDLSCSWLHGSISSNSSLFFLPRLQKLNLGSNDFNYSKISSGFXXXXXXXXXXXXXX 147
++ LD S + L G++ S+ LP L + N + + S
Sbjct: 127 LVTLDFSYNALSGTLPP--SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 148 NFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSK--------------------- 186
TG IPP+ NL L ++DLS N G+ +F +
Sbjct: 185 RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 187 --LSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIP 226
L+ L+ N++ G +P + +L L ++ + FN+L G IP
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 613 FSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIIL 672
+ L ++ S+NQLT + P + L ++ NN + +L N + + + I
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITPLANLTNLTGLTLFNNQI- 119
Query: 673 TMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLAN 732
D+ + LT ++LSSN I A+ G L SL+ LN S N +T P LAN
Sbjct: 120 ----TDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFSSNQVTDLKP--LAN 171
Query: 733 LTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
LT LE LD+SSNK V I + +A L +L L ++NQ+ P G
Sbjct: 172 LTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLG 214
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 156/355 (43%), Gaps = 50/355 (14%)
Query: 421 LSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNK 480
L+++ + SNN + P + + K +D+ MNN Q A NLT L L N+
Sbjct: 62 LNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 481 LEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSC 540
+ P L N +L+ +++ +N +S +I G ++L+ + N+ P A
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLNFSSNQVTDLKP--LANLT 173
Query: 541 DLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRF 600
L L+++ N++ L LE L NN I+D P L IL L L L N+
Sbjct: 174 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 601 WGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLN 660
IG T A + L LDL++NQ++ + P L + G N ++ +S L
Sbjct: 230 KD-IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-----QISNISPLA 280
Query: 661 SSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHN 720
LT T ++L+ N+ + P + L +L L + N
Sbjct: 281 G-----------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
Query: 721 NLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVP 775
N++ P +++LT+L+ L +NK V + +A+L +++ L+ HNQ+ P
Sbjct: 316 NISDISP--VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP 366
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 122/303 (40%), Gaps = 44/303 (14%)
Query: 187 LSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLS 246
L+ +NF NQLT P + L L + + N + P + +LT+L + +NQ++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 247 GSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAXXXXXXXXXXXXXXXXXXXXXXXXXXF 306
P + L NL RL+LSSN +S D +
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTIS------DISALSGLTSLQQLNFSSNQVTDLKPLANL 172
Query: 307 LNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHT-LSYLDLSQ 365
L RL +S+ K+S V+ K LE L + NQI P +GI T L L L+
Sbjct: 173 TTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDITP-----LGILTNLDELSLNG 226
Query: 366 NFLRSIKRLPWKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEIPSSFCNLSSIQ 425
N L+ I L +L N +T ++NN ++ P L+ +
Sbjct: 227 NQLKDIGTL--ASLTN------------------LTDLDLANNQISNLAP--LSGLTKLT 264
Query: 426 YLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPL 485
L++ N S P + + + L+L N + I P + K NLT+L L N +
Sbjct: 265 ELKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLK--NLTYLTLYFNNISDIS 321
Query: 486 PPS 488
P S
Sbjct: 322 PVS 324
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 157 LGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYL 216
L NLT L LD+S+N + +I ++ + L L NQ++ P +G L NL + L
Sbjct: 169 LANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 217 YFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLS 270
N LK + SLT+L +D +NQ+S P S L LT L L +N++S
Sbjct: 225 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS 274
Score = 35.8 bits (81), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 47/147 (31%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIP------------- 202
+L +LT L LDL+NN P + +KL+ L G NQ++ P
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 291
Query: 203 -------SSVGELANLATVYLYFNSLKGTIP-------SRIF-------------SLTSL 235
S + L NL + LYFN++ P R+F +LT++
Sbjct: 292 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 351
Query: 236 KQVDFRHNQLSGSVPSSVYELVNLTRL 262
+ HNQ+S P L NLTR+
Sbjct: 352 NWLSAGHNQISDLTP-----LANLTRI 373
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 156/355 (43%), Gaps = 50/355 (14%)
Query: 421 LSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNK 480
L+++ + SNN + P + + K +D+ MNN Q A NLT L L N+
Sbjct: 62 LNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 481 LEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSC 540
+ P L N +L+ +++ +N +S +I G ++L+ N+ P A
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 541 DLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRF 600
L L+++ N++ L LE L NN I+D P L IL L L L N+
Sbjct: 174 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 601 WGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLN 660
IG T A + L LDL++NQ++ + P L + G N ++ +S L
Sbjct: 230 KD-IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-----QISNISPLA 280
Query: 661 SSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHN 720
LT T ++L+ N+ + P + L +L L + N
Sbjct: 281 G-----------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
Query: 721 NLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVP 775
N++ P +++LT+L+ L S+NK V + +A+L +++ L+ HNQ+ P
Sbjct: 316 NISDISP--VSSLTKLQRLFFSNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP 366
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 613 FSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIIL 672
+ L ++ S+NQLT + P + L ++ NN + +L N + + + I
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITPLANLTNLTGLTLFNNQI- 119
Query: 673 TMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLAN 732
D+ + LT ++LSSN I A+ G L SL+ L+ S N +T P LAN
Sbjct: 120 ----TDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LAN 171
Query: 733 LTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
LT LE LD+SSNK V I + +A L +L L ++NQ+ P G
Sbjct: 172 LTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLG 214
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 122/303 (40%), Gaps = 44/303 (14%)
Query: 187 LSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLS 246
L+ +NF NQLT P + L L + + N + P + +LT+L + +NQ++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 247 GSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAXXXXXXXXXXXXXXXXXXXXXXXXXXF 306
P + L NL RL+LSSN +S D +
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTIS------DISALSGLTSLQQLSFSSNQVTDLKPLANL 172
Query: 307 LNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHT-LSYLDLSQ 365
L RL +S+ K+S V+ K LE L + NQI P +GI T L L L+
Sbjct: 173 TTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDITP-----LGILTNLDELSLNG 226
Query: 366 NFLRSIKRLPWKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEIPSSFCNLSSIQ 425
N L+ I L +L N +T ++NN ++ P L+ +
Sbjct: 227 NQLKDIGTL--ASLTN------------------LTDLDLANNQISNLAP--LSGLTKLT 264
Query: 426 YLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPL 485
L++ N S P + + + L+L N + I P + K NLT+L L N +
Sbjct: 265 ELKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLK--NLTYLTLYFNNISDIS 321
Query: 486 PPS 488
P S
Sbjct: 322 PVS 324
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Query: 157 LGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYL 216
L NLT L LD+S+N + +I ++ + L L NQ++ P +G L NL + L
Sbjct: 169 LANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 217 YFNSLK--GTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLS 270
N LK GT+ SLT+L +D +NQ+S P S L LT L L +N++S
Sbjct: 225 NGNQLKDIGTLA----SLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS 274
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 51/149 (34%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIP------------- 202
+L +LT L LDL+NN P + +KL+ L G NQ++ P
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 291
Query: 203 -------SSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFR-------------- 241
S + L NL + LYFN++ P + SLT L+++ F
Sbjct: 292 ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDVSSLANLT 349
Query: 242 --------HNQLSGSVPSSVYELVNLTRL 262
HNQ+S P L NLTR+
Sbjct: 350 NINWLSAGHNQISDLTP-----LANLTRI 373
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPN-MFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATV 214
+L LT L YL L+ N + +PN +F + L L NQL +L NL +
Sbjct: 80 ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 215 YLYFNSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
YLY N L+ ++P +F LT+L ++D +NQL S+P V++ L L +L L+ N+L
Sbjct: 139 YLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQL 193
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 185 SKLSYLNFGGNQLTGQIPSSV-GELANLATVYLYFNSLKGTIPSRIFS-LTSLKQVDFRH 242
+ L+YL GNQL +P+ V +L NL + L N L+ ++P +F LT+L + H
Sbjct: 85 TNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYH 142
Query: 243 NQLSGSVPSSVYE-LVNLTRLDLSSNKLSGTVE 274
NQL S+P V++ L NLTRLDL +N+L E
Sbjct: 143 NQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 36/170 (21%)
Query: 187 LSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFS-LTSLKQVDFRHNQL 245
+ YL GGN+L S++ EL NL + L N L+ ++P+ +F LT+LK++ NQL
Sbjct: 65 VRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL 121
Query: 246 SGSVPSSVYE-LVNLTRLDLSSNKLSGTVE-LYDFAXXXXXXXXXXXXXXXXXXXXXXXX 303
S+P V++ L NLT L L N+L + ++D
Sbjct: 122 Q-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFD-------------------------- 154
Query: 304 XXFLNLSRLGLSACKISKFPV-ILKTQLQLEWLDLSENQIHGRVPGWMWD 352
NL+RL L ++ P + QL+ L L++NQ+ VP ++D
Sbjct: 155 -KLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFD 202
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 685 LTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSN 744
LT + L N+ Q + KL +L L + HN L LT L LDL +N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN 167
Query: 745 KLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
+L L L L+L+ NQL+ VP G
Sbjct: 168 QLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDG 199
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 30/142 (21%)
Query: 416 SSFCNLSSIQYLEMSNNSFSGQIPQCLVN--STVKFLDLRMNNFQGIIPQTYAKDCNLTF 473
S+ L+++ YL ++ N +P + + + +K L L N Q + + K NLT+
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 474 LKLNGNKLEGPLPPSLINCFS-LHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSI 532
L L N+L+ LP + + + L +D+ NN L S+
Sbjct: 138 LYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQ------------------------SL 172
Query: 533 PQ-MFAKSCDLRSLNLNGNQLE 553
P+ +F K L+ L+LN NQL+
Sbjct: 173 PEGVFDKLTQLKQLSLNDNQLK 194
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 160 LTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFN 219
LT+L +L+L N +F + ++L L NQL L L +YL N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 220 SLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
LK ++PS +F LT LK++ NQL S+P+ ++ L NL L LS+N+L
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 159 NLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSV-GELANLATVYLY 217
+LT+L L L+NN +F + ++L L GGNQL +PS V L L + L
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLN 139
Query: 218 FNSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYE 255
N L+ +IP+ F LT+L+ + NQL SVP ++
Sbjct: 140 TNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFD 176
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 166 LDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTI 225
LDL + F +KL++LN NQL +L L T+ L N L ++
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98
Query: 226 PSRIFS-LTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
P +F LT L ++ NQL S+PS V++ L L L L++N+L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL 143
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 7/166 (4%)
Query: 91 LDLSCSWLHGSISSNSSLFFLPRLQKLNLGSNDFNYSKISSGFXXXXXXXXXXXXXXNFT 150
LDL + L + S+++ L +L LNL N +S+G N
Sbjct: 40 LDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANNQL 95
Query: 151 GSIPPSL-GNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELA 209
S+P + +LTQL L L N +F +KL L NQL + +L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 210 NLATVYLYFNSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVY 254
NL T+ L N L+ ++P F L L+ + NQ S +Y
Sbjct: 156 NLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCEILY 200
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 685 LTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLAN-LTELESLDLSS 743
LT T+ L++N+ + L L L + N L +PS + + LT+L+ L L++
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNT 140
Query: 744 NKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
N+L L +L L+LS NQL+ VP G
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 683 RVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLS 742
R LT T ++L N+ Q + L L L +++N L +LT+L+ L L
Sbjct: 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 743 SNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
N+L L L L L+ NQL+ +P G
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAG 149
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 160 LTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFN 219
LT+L +L+L N +F + ++L L NQL L L +YL N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 220 SLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
LK ++PS +F LT LK++ NQL S+P+ ++ L NL L LS+N+L
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 159 NLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSV-GELANLATVYLY 217
+LT+L L L+NN +F + ++L L GGNQL +PS V L L + L
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLN 139
Query: 218 FNSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYE 255
N L+ +IP+ F LT+L+ + NQL SVP ++
Sbjct: 140 TNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFD 176
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 166 LDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTI 225
LDL + F +KL++LN NQL +L L T+ L N L ++
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98
Query: 226 PSRIFS-LTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
P +F LT L ++ NQL S+PS V++ L L L L++N+L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL 143
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 7/166 (4%)
Query: 91 LDLSCSWLHGSISSNSSLFFLPRLQKLNLGSNDFNYSKISSGFXXXXXXXXXXXXXXNFT 150
LDL + L + S+++ L +L LNL N +S+G N
Sbjct: 40 LDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANNQL 95
Query: 151 GSIPPSL-GNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELA 209
S+P + +LTQL L L N +F +KL L NQL + +L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 210 NLATVYLYFNSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVY 254
NL T+ L N L+ ++P F L L+ + NQ S ++Y
Sbjct: 156 NLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCETLY 200
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 685 LTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLAN-LTELESLDLSS 743
LT T+ L++N+ + L L L + N L +PS + + LT+L+ L L++
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNT 140
Query: 744 NKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
N+L L +L L+LS NQL+ VP G
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 683 RVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLS 742
R LT T ++L N+ Q + L L L +++N L +LT+L+ L L
Sbjct: 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 743 SNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
N+L L L L L+ NQL+ +P G
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAG 149
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 613 FSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIIL 672
+ L ++ S+NQLT + P + L ++ NN + +L N + + + I
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITPLANLTNLTGLTLFNNQI- 119
Query: 673 TMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLAN 732
D+ + LT ++LSSN I A+ G L SL+ L+ S N +T P LAN
Sbjct: 120 ----TDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LAN 171
Query: 733 LTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
LT LE LD+SSNK V I + +A L +L L ++NQ+ P G
Sbjct: 172 LTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLG 214
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 155/355 (43%), Gaps = 50/355 (14%)
Query: 421 LSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNK 480
L+++ + SNN + P + + K +D+ MNN Q A NLT L L N+
Sbjct: 62 LNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 481 LEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSC 540
+ P L N +L+ +++ +N +S +I G ++L+ N+ P A
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 541 DLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRF 600
L L+++ N++ L LE L NN I+D P L IL L L L N+
Sbjct: 174 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 601 WGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLN 660
IG T A + L LDL++NQ++ + P L + G N ++ +S L
Sbjct: 230 KD-IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-----QISNISPLA 280
Query: 661 SSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHN 720
LT T ++L+ N+ + P + L +L L + N
Sbjct: 281 G-----------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
Query: 721 NLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVP 775
N++ P +++LT+L+ L +NK V + +A+L +++ L+ HNQ+ P
Sbjct: 316 NISDISP--VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP 366
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 122/303 (40%), Gaps = 44/303 (14%)
Query: 187 LSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLS 246
L+ +NF NQLT P + L L + + N + P + +LT+L + +NQ++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 247 GSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAXXXXXXXXXXXXXXXXXXXXXXXXXXF 306
P + L NL RL+LSSN +S D +
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTIS------DISALSGLTSLQQLSFSSNQVTDLKPLANL 172
Query: 307 LNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHT-LSYLDLSQ 365
L RL +S+ K+S V+ K LE L + NQI P +GI T L L L+
Sbjct: 173 TTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDITP-----LGILTNLDELSLNG 226
Query: 366 NFLRSIKRLPWKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEIPSSFCNLSSIQ 425
N L+ I L +L N +T ++NN ++ P L+ +
Sbjct: 227 NQLKDIGTL--ASLTN------------------LTDLDLANNQISNLAP--LSGLTKLT 264
Query: 426 YLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPL 485
L++ N S P + + + L+L N + I P + K NLT+L L N +
Sbjct: 265 ELKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLK--NLTYLTLYFNNISDIS 321
Query: 486 PPS 488
P S
Sbjct: 322 PVS 324
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Query: 157 LGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYL 216
L NLT L LD+S+N + +I ++ + L L NQ++ P +G L NL + L
Sbjct: 169 LANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 217 YFNSLK--GTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLS 270
N LK GT+ SLT+L +D +NQ+S P S L LT L L +N++S
Sbjct: 225 NGNQLKDIGTLA----SLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS 274
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 47/147 (31%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIP------------- 202
+L +LT L LDL+NN P + +KL+ L G NQ++ P
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 291
Query: 203 -------SSVGELANLATVYLYFNSLKGTIP-------SRIF-------------SLTSL 235
S + L NL + LYFN++ P R+F +LT++
Sbjct: 292 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 351
Query: 236 KQVDFRHNQLSGSVPSSVYELVNLTRL 262
+ HNQ+S P L NLTR+
Sbjct: 352 NWLSAGHNQISDLTP-----LANLTRI 373
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 185 SKLSYLNFGGNQLTGQIPSSV-GELANLATVYLYFNSLKGTIPSRIFS-LTSLKQVDFRH 242
+ L+YL GNQL +P+ V +L NL + L N L+ ++P +F LT+L ++ H
Sbjct: 85 TNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAH 142
Query: 243 NQLSGSVPSSVYE-LVNLTRLDLSSNKLSGTVE 274
NQL S+P V++ L NLT LDLS N+L E
Sbjct: 143 NQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Query: 187 LSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFS-LTSLKQVDFRHNQL 245
+ YL GGN+L S++ EL NL + L N L+ ++P+ +F LT+LK++ NQL
Sbjct: 65 VRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL 121
Query: 246 SGSVPSSVYE-LVNLTRLDLSSNKL 269
S+P V++ L NLT L+L+ N+L
Sbjct: 122 Q-SLPDGVFDKLTNLTYLNLAHNQL 145
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 6/158 (3%)
Query: 99 HGSISSNSSLFFLPRLQKLNLGSNDFNYSKISSGFXXXXXXXXXXXXXXNFTGSIPPSLG 158
+ I S + +LP ++ L LG N + + + L
Sbjct: 50 NSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLT 109
Query: 159 NLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYF 218
NL +LV ++ S + + TN L+YLN NQL +L NL + L +
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTN---LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 219 NSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYE 255
N L+ ++P +F LT LK + NQL SVP V++
Sbjct: 167 NQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 202
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPN-MFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATV 214
+L LT L YL L+ N + +PN +F + L L NQL +L NL +
Sbjct: 80 ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 215 YLYFNSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
L N L+ ++P +F LT+L ++D +NQL S+P V++ L L L L N+L
Sbjct: 139 NLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 685 LTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTG---GIPSSLANLTELESLDL 741
LT + L N+ Q + KL +L LN++HN L G+ L NLTE LDL
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE---LDL 164
Query: 742 SSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRGT--QFNTFQNDSYAGNPGLCGFP 798
S N+L L L L L NQL+ VP G + + Q NP C P
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
Query: 603 PIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVE-VKYLSLLNS 661
PI F++ +L +T + LN+ +I ++ +V+ ++YL N
Sbjct: 8 PIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLP--NV 65
Query: 662 SYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNN 721
Y A + K D+ + LT T + L+ N+ Q + KL +LK L + N
Sbjct: 66 RYLALGGN-----KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 722 LTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
L LT L L+L+ N+L L +L+ L+LS+NQL+ +P G
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEG 175
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 160 LTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFN 219
LT L YL+L++N +F + L+ L+ NQL +L L + LY N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 220 SLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVY 254
LK ++P +F LTSL+ + N + P Y
Sbjct: 192 QLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 226
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 121/296 (40%), Gaps = 42/296 (14%)
Query: 470 NLTFLKLNGNKLEGPLPPSLINCFS-LHVIDVGNNNLSGEIPQ-CFGNSALKVFDMRMNR 527
N+T L L N+L LPP+ +S L ++D G N++S P+ C LKV +++ N
Sbjct: 26 NITVLNLTHNQLRR-LPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 528 FNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDT-------- 579
+ Q F +L L+L N + S N + L LD+ +N ++ T
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQL 144
Query: 580 FPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHN----------QLTGV 629
+L + ++L LRS +GN S LR LDLS N Q G
Sbjct: 145 ENLQELLLAKNKILALRSEELEF-LGN-------SSLRKLDLSSNPLKEFSPGCFQTIGK 196
Query: 630 LPTRYLNNFRAMIHGENNSV----TVEVKYLSLLNSSYYACYESIILTMKGIDLQLERVL 685
L LNN + H ++ LSL N+ A ES +K +L
Sbjct: 197 LFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNL------ 250
Query: 686 TIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDL 741
T +DLS N L SL+ L++ +NN+ P S L+ L L L
Sbjct: 251 ---TQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 98/258 (37%), Gaps = 49/258 (18%)
Query: 400 MTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQ-CLVNSTVKFLDLRMNNFQ 458
+T+ ++++N L P++F S + L+ NS S P+ C + +K L+L+ N
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 459 GIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLS------------ 506
I QT+ NLT L L N + N +L +D+ +N LS
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLEN 146
Query: 507 ---------------GEIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQ 551
E + GNS+L+ D+ N P F L +L LN Q
Sbjct: 147 LQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQ 206
Query: 552 LEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRA 611
L L+ L C L I N L L +N+ +T +
Sbjct: 207 LNPHLTEKL--CWELSNTSIQN-------------------LSLANNQLLATSESTFSGL 245
Query: 612 PFSKLRILDLSHNQLTGV 629
++ L LDLS+N L V
Sbjct: 246 KWTNLTQLDLSYNNLHDV 263
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%)
Query: 185 SKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQ 244
S ++ LN NQL P++ + LA + FNS+ P L LK ++ +HN+
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 245 LSGSVPSSVYELVNLTRLDLSSNKL 269
LS + NLT LDL SN +
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSI 109
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 13/236 (5%)
Query: 545 LNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPI 604
LNL NQL + L +LD G N I+ P +ILP L+VL L+ N I
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL-SQI 88
Query: 605 GNTKTRAPFSKLRILDLSHNQLTGVL--PTRYLNNFRAMIHGENNSVTVEVKY-LSLLNS 661
+ +T + L LDL N + + P + N + N + ++ + L N
Sbjct: 89 SD-QTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENL 147
Query: 662 SYYACYESIILTMKGIDLQLERVLTIFTTIDLSSN---RFQGGIPAIVGKLNSLKGLNIS 718
++ IL ++ +L+ ++ +DLSSN F G +GKL +L N
Sbjct: 148 QELLLAKNKILALRSEELEFLGNSSL-RKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQ 206
Query: 719 HN-NLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLK--SLSVLNLSHNQLE 771
N +LT + L+N T +++L L++N+L+ + LK +L+ L+LS+N L
Sbjct: 207 LNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLH 261
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 157/357 (43%), Gaps = 55/357 (15%)
Query: 421 LSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNK 480
L+++ + SNN + P + + K +D+ MNN Q A NLT L L N+
Sbjct: 62 LNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 481 LEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQM--FAK 538
+ P L N +L+ +++ +N +S +I G ++L+ + F + + A
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLN-----FGNQVTDLKPLAN 170
Query: 539 SCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSN 598
L L+++ N++ L LE L NN I+D P L IL L L L N
Sbjct: 171 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 226
Query: 599 RFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSL 658
+ IG T A + L LDL++NQ++ + P L + G N ++ +S
Sbjct: 227 QLKD-IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-----QISNISP 277
Query: 659 LNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNIS 718
L LT T ++L+ N+ + P + L +L L +
Sbjct: 278 LAG-----------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLY 312
Query: 719 HNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVP 775
NN++ P +++LT+L+ L S+NK V + +A+L +++ L+ HNQ+ P
Sbjct: 313 FNNISDISP--VSSLTKLQRLFFSNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP 365
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 101/243 (41%), Gaps = 36/243 (14%)
Query: 157 LGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYL 216
L NLT+LV + ++NN P N + L+ L NQ+T P + L NL + L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 217 YFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELY 276
N++ S + LTSL+Q++F NQ++ P + L L RLD+SSNK+S
Sbjct: 137 SSNTISDI--SALSGLTSLQQLNF-GNQVTDLKP--LANLTTLERLDISSNKVS------ 185
Query: 277 DFAXXXXXXXXXXXXXXXXXXXXXXXXXXFLNLSRLGLSACKISKFPVILKTQLQLEWLD 336
D + NL L L+ ++ L + L LD
Sbjct: 186 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLD 244
Query: 337 LSENQIHGRVP--------------GWMWDV----GIHTLSYLDLSQNFLRSIKRLPWKN 378
L+ NQI P + ++ G+ L+ L+L++N L I P N
Sbjct: 245 LANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISN 302
Query: 379 LKN 381
LKN
Sbjct: 303 LKN 305
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 613 FSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIIL 672
+ L ++ S+NQLT + P + L ++ NN + +L N + + + I
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITPLANLTNLTGLTLFNNQI- 119
Query: 673 TMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLAN 732
D+ + LT ++LSSN I A+ G L SL+ LN N +T P LAN
Sbjct: 120 ----TDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFG-NQVTDLKP--LAN 170
Query: 733 LTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
LT LE LD+SSNK V I + +A L +L L ++NQ+ P G
Sbjct: 171 LTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLG 213
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 121/303 (39%), Gaps = 45/303 (14%)
Query: 187 LSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLS 246
L+ +NF NQLT P + L L + + N + P + +LT+L + +NQ++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 247 GSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAXXXXXXXXXXXXXXXXXXXXXXXXXXF 306
P + L NL RL+LSSN +S L
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALSGLT-------SLQQLNFGNQVTDLKPLANL 171
Query: 307 LNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHT-LSYLDLSQ 365
L RL +S+ K+S V+ K LE L + NQI P +GI T L L L+
Sbjct: 172 TTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDITP-----LGILTNLDELSLNG 225
Query: 366 NFLRSIKRLPWKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEIPSSFCNLSSIQ 425
N L+ I L +L N +T ++NN ++ P L+ +
Sbjct: 226 NQLKDIGTL--ASLTN------------------LTDLDLANNQISNLAP--LSGLTKLT 263
Query: 426 YLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPL 485
L++ N S P + + + L+L N + I P + K NLT+L L N +
Sbjct: 264 ELKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLK--NLTYLTLYFNNISDIS 320
Query: 486 PPS 488
P S
Sbjct: 321 PVS 323
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 51/149 (34%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIP------------- 202
+L +LT L LDL+NN P + +KL+ L G NQ++ P
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 290
Query: 203 -------SSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFR-------------- 241
S + L NL + LYFN++ P + SLT L+++ F
Sbjct: 291 ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDVSSLANLT 348
Query: 242 --------HNQLSGSVPSSVYELVNLTRL 262
HNQ+S P L NLTR+
Sbjct: 349 NINWLSAGHNQISDLTP-----LANLTRI 372
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 32/228 (14%)
Query: 587 LPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLT----------GVLPTRYLN 636
L L+ L SN+ GN + L LDLS N L+ G +YL+
Sbjct: 324 LKSLKRLTFTSNKG----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 637 -NFRAMIHGENNSVTVE-VKYLSLLNSSYYACYE-SIILTMKGIDLQLERVLTIFTTIDL 693
+F +I +N + +E +++L +S+ E S+ L+++ + +D+
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-----------IYLDI 428
Query: 694 SSNRFQGGIPAIVGKLNSLKGLNISHNNLTGG-IPSSLANLTELESLDLSSNKLVGQIPM 752
S + I L+SL+ L ++ N+ +P L L LDLS +L P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 753 QMASLKSLSVLNLSHNQLEGPVPRGT--QFNTFQNDSYAGNPGLCGFP 798
SL SL VLN++ NQL+ VP G + + Q NP C P
Sbjct: 489 AFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 706 VGKLNSLKGLNISHNNLTG-GIPSSLANLTELESLDLSSNKL 746
+G L +LK LN++HN + +P +NLT LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 106/277 (38%), Gaps = 64/277 (23%)
Query: 311 RLGLSACKISKFPVILKTQLQ--------------------LEWLDLSENQIHGRVPGWM 350
L L CK +FP + L+ LE+LDLS N + +
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 351 WDVGIHTLSYLDLS--------QNFL--RSIKRLPWK--NLKNXXXXXXXXXXXXXXXXX 398
D G +L YLDLS NFL ++ L ++ NLK
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN----- 422
Query: 399 XMTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQ 458
+ IS+ + F LSS++ L+M+ NSF +
Sbjct: 423 -LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ----------------------E 459
Query: 459 GIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGN-SA 517
+P + + NLTFL L+ +LE P + + SL V+++ +N L F ++
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519
Query: 518 LKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEG 554
L+ + N ++ S P++ S R LN N + +G
Sbjct: 520 LQKIWLHTNPWDCSCPRIDYLS---RWLNKNSQKEQG 553
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 160 LTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQ-IPSSVGELANLATVYLYF 218
L L+YLD+S+ +F S L L GN +P EL NL + L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 219 NSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSN 267
L+ P+ SL+SL+ ++ NQL SVP +++ L +L ++ L +N
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 494 SLHVIDVGNNNLS--GEIPQC-FGNSALKVFDMRMNRFNGSIPQM--FAKSCDLRSLNLN 548
SL +D+ N LS G Q FG ++LK D+ FNG I F L L+
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQ 404
Query: 549 GNQLEGPLSPSL-INCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRF---WGPI 604
+ L+ S+ ++ R L LDI + H F L L VL + N F + P
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 605 GNTKTRAPFSKLRILDLSHNQLTGVLPTRY 634
T+ R L LDLS QL + PT +
Sbjct: 465 IFTELR----NLTFLDLSQCQLEQLSPTAF 490
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 162 QLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSL 221
+L LDLS + + S LS L GN + + L++L + +L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 222 KGTIPSRIFSLTSLKQVDFRHNQL-SGSVPSSVYELVNLTRLDLSSNKL 269
I L +LK+++ HN + S +P L NL LDLSSNK+
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 29/74 (39%)
Query: 153 IPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLA 212
+P L L +LDLS P F + S L LN NQL L +L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 213 TVYLYFNSLKGTIP 226
++L+ N + P
Sbjct: 522 KIWLHTNPWDCSCP 535
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 160 LTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFN 219
L L L L N P +F + +KL+YL+ G N+L +L +L + LY N
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 220 SLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSN 267
LK LT LK + +NQL VP ++ L L L L N
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 148 NFTGSIP-PSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVG 206
N S+P + LT+L L L++N +F L L N+L
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106
Query: 207 ELANLATVYLYFNSLKGTIPSRIF-SLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDL 264
+L NLA + L N LK ++P R+F SLT L + +N+L S+P V++ L +L L L
Sbjct: 107 QLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRL 164
Query: 265 SSNKLSGTVE 274
+N+L E
Sbjct: 165 YNNQLKRVPE 174
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%)
Query: 685 LTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSN 744
LT T + L N Q + KL SLK L + +N L + LTEL++L L +N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 745 KLVGQIPMQMASLKSLSVLNLSHN 768
+L SL+ L +L L N
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 180 MFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIF-SLTSLKQV 238
+F L+ L NQL P L L + L +N L+ ++P +F LTSLK++
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL 162
Query: 239 DFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKLSGTVE 274
+NQL VP ++ L L L L +N+L E
Sbjct: 163 RLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPE 198
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 166 LDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSV-GELANLATVYLYFNSLKGT 224
LDL +N F +KL L N+L +P+ + EL NL T+++ N L+
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA- 99
Query: 225 IPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
+P +F L +L ++ NQL S+P V++ L LT L L N+L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 24/145 (16%)
Query: 647 NSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLERV----------LTIFTTIDLSSN 696
NSV K L+ + S+ A K +DLQ ++ LT + L+ N
Sbjct: 19 NSVDCSSKKLTAIPSNIPA-------DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
Query: 697 RFQGGIPAIVGKLNSLKGLNISHNNLTG---GIPSSLANLTELESLDLSSNKLVGQIPMQ 753
+ Q I +L +L+ L ++ N L G+ L NL EL L N+L P
Sbjct: 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR---LDRNQLKSLPPRV 128
Query: 754 MASLKSLSVLNLSHNQLEGPVPRGT 778
SL L+ L+L +N+L+ +P+G
Sbjct: 129 FDSLTKLTYLSLGYNELQS-LPKGV 152
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 676 GIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTE 735
GI +L+ + T++ T N+ Q + +L +L L + N L P +LT+
Sbjct: 79 GIFKELKNLETLWVT----DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 736 LESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQL----EGPVPRGTQFNTFQNDS 787
L L L N+L L SL L L +NQL EG + T+ T + D+
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 101/243 (41%), Gaps = 36/243 (14%)
Query: 157 LGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYL 216
L NLT+LV + ++NN P N + L+ L NQ+T P + L NL + L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 217 YFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELY 276
N++ S + LTSL+Q++F NQ++ P + L L RLD+SSNK+S
Sbjct: 137 SSNTISDI--SALSGLTSLQQLNF-GNQVTDLKP--LANLTTLERLDISSNKVS------ 185
Query: 277 DFAXXXXXXXXXXXXXXXXXXXXXXXXXXFLNLSRLGLSACKISKFPVILKTQLQLEWLD 336
D + NL L L+ ++ L + L LD
Sbjct: 186 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLD 244
Query: 337 LSENQIHGRVP--------------GWMWDV----GIHTLSYLDLSQNFLRSIKRLPWKN 378
L+ NQI P + ++ G+ L+ L+L++N L I P N
Sbjct: 245 LANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISN 302
Query: 379 LKN 381
LKN
Sbjct: 303 LKN 305
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 613 FSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIIL 672
+ L ++ S+NQLT + P + L ++ NN + +L N + + + I
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITPLANLTNLTGLTLFNNQI- 119
Query: 673 TMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLAN 732
D+ + LT ++LSSN I A+ G L SL+ LN N +T P LAN
Sbjct: 120 ----TDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFG-NQVTDLKP--LAN 170
Query: 733 LTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
LT LE LD+SSNK V I + +A L +L L ++NQ+ P G
Sbjct: 171 LTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLG 213
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 156/357 (43%), Gaps = 55/357 (15%)
Query: 421 LSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNK 480
L+++ + SNN + P + + K +D+ MNN Q A NLT L L N+
Sbjct: 62 LNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 481 LEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQM--FAK 538
+ P L N +L+ +++ +N +S +I G ++L+ + F + + A
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLN-----FGNQVTDLKPLAN 170
Query: 539 SCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSN 598
L L+++ N++ L LE L NN I+D P L IL L L L N
Sbjct: 171 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 226
Query: 599 RFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSL 658
+ IG T A + L LDL++NQ++ + P L + G N ++ +S
Sbjct: 227 QLKD-IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-----QISNISP 277
Query: 659 LNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNIS 718
L LT T ++L+ N+ + P + L +L L +
Sbjct: 278 LAG-----------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLY 312
Query: 719 HNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVP 775
NN++ P +++LT+L+ L +NK V + +A+L +++ L+ HNQ+ P
Sbjct: 313 FNNISDISP--VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP 365
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 121/303 (39%), Gaps = 45/303 (14%)
Query: 187 LSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLS 246
L+ +NF NQLT P + L L + + N + P + +LT+L + +NQ++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 247 GSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAXXXXXXXXXXXXXXXXXXXXXXXXXXF 306
P + L NL RL+LSSN +S L
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALSGLT-------SLQQLNFGNQVTDLKPLANL 171
Query: 307 LNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHT-LSYLDLSQ 365
L RL +S+ K+S V+ K LE L + NQI P +GI T L L L+
Sbjct: 172 TTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDITP-----LGILTNLDELSLNG 225
Query: 366 NFLRSIKRLPWKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEIPSSFCNLSSIQ 425
N L+ I L +L N +T ++NN ++ P L+ +
Sbjct: 226 NQLKDIGTL--ASLTN------------------LTDLDLANNQISNLAP--LSGLTKLT 263
Query: 426 YLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPL 485
L++ N S P + + + L+L N + I P + K NLT+L L N +
Sbjct: 264 ELKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLK--NLTYLTLYFNNISDIS 320
Query: 486 PPS 488
P S
Sbjct: 321 PVS 323
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 26/144 (18%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIP------------- 202
+L +LT L LDL+NN P + +KL+ L G NQ++ P
Sbjct: 233 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 290
Query: 203 -------SSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE 255
S + L NL + LYFN++ P + SLT L+++ F +N++S SS+
Sbjct: 291 ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN 346
Query: 256 LVNLTRLDLSSNKLSGTVELYDFA 279
L N+ L N++S L +
Sbjct: 347 LTNINWLSAGHNQISDLTPLANLT 370
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 95/224 (42%), Gaps = 25/224 (11%)
Query: 568 VLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLT 627
+LD+ NN I + + L L LIL +N+ + AP KL L LS NQL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLVKLERLYLSKNQLK 113
Query: 628 GVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIILTMKGID---LQLERV 684
LP + + + EN V + LN + L GI+ Q +
Sbjct: 114 E-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 685 LTIFTTIDLSSNRFQGGIPAIVGKLN------------SLKGLN------ISHNNLTGGI 726
L+ D + G+P + +L+ SLKGLN +S N+++
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232
Query: 727 PSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQL 770
SLAN L L L++NKLV ++P +A K + V+ L +N +
Sbjct: 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 95/224 (42%), Gaps = 25/224 (11%)
Query: 568 VLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLT 627
+LD+ NN I + + L L LIL +N+ + AP KL L LS NQL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--ISPGAFAPLVKLERLYLSKNQLK 113
Query: 628 GVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIILTMKGID---LQLERV 684
LP + + + EN V + LN + L GI+ Q +
Sbjct: 114 E-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 685 LTIFTTIDLSSNRFQGGIPAIVGKLN------------SLKGLN------ISHNNLTGGI 726
L+ D + G+P + +L+ SLKGLN +S N+++
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232
Query: 727 PSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQL 770
SLAN L L L++NKLV ++P +A K + V+ L +N +
Sbjct: 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 132/336 (39%), Gaps = 68/336 (20%)
Query: 534 QMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVL 593
++F DL+ LNL N++ + L+VL++ N + + + LP++ +
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 594 ILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGV-----LPTRYLN----------NF 638
L+ N I +T KL+ LDL N LT + +P +L+ N
Sbjct: 344 DLQKNHI--AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL 401
Query: 639 RA-MIHGENNSVT--------VEVKYLSLL---NSSYYAC-----------YESIILTMK 675
A +IH N + + V +L +L + + +C E + L
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461
Query: 676 GIDLQLE--------RVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIP 727
+ L E L+ + L+ N P + L +L+GL+++ N LT
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521
Query: 728 SSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRGTQFN--TFQN 785
+ L LE LD+S N+L+ P SLSVL+++HN+ T N N
Sbjct: 522 NDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINWLNHTN 576
Query: 786 DSYAGNPG--LCGFPLS-----------ESCDMDEA 808
+ AG P C +P S E CD +E
Sbjct: 577 VTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEV 612
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 121/310 (39%), Gaps = 60/310 (19%)
Query: 357 TLSYLDLSQNFLRSIKRLPWKNLKNXXXXXXXXXXXXXXXXXX------MTIFSISNNYL 410
++ +LDLS F+ S+ ++ LK+ + + ++S N L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 411 TGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFL------DLRMNNFQGI---- 460
S+F L + Y+++ N + + + T KFL DLR N I
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIA-----IIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381
Query: 461 -IPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSG--------EIPQ 511
IP + L+GNKL LP IN + ++I + N L +P
Sbjct: 382 SIPDIF----------LSGNKLV-TLPK--IN-LTANLIHLSENRLENLDILYFLLRVPH 427
Query: 512 CFGNSALKVFDMRMNRFNG-SIPQMFAKSCDLRSLNLNGNQLEGPLSPSLI-----NCRY 565
L++ + NRF+ S Q +++ L L L N L+ L +
Sbjct: 428 ------LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481
Query: 566 LEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQ 625
L+VL + +N++N P L LR L L SNR N + L ILD+S NQ
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP----ANLEILDISRNQ 537
Query: 626 LTGVLPTRYL 635
L P ++
Sbjct: 538 LLAPNPDVFV 547
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 494 SLHVIDVGNN--NLSGEIPQCF----GNSALKVFDMRMNRFNGSIPQMFAKSCDLRSLNL 547
SL + +G N L+ E C+ G S L+V + N N P +F+ LR L+L
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
Query: 548 NGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRF 600
N N+L LS + + LE+LDI N + P ++ L VL + N+F
Sbjct: 512 NSNRLT-VLSHNDLPAN-LEILDISRNQLLAPNP---DVFVSLSVLDITHNKF 559
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 679 LQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELES 738
LQ++ L + T+DLS N+ Q +P + L +L L++S N LT +L L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 739 LDLSSNKLVGQIPMQMASLKSLSVLNLSHNQL 770
L L N+L P + L L+L++NQL
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 158 GNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLY 217
G L L LDLS+N + +P + L+ L+ N+LT ++ L L +YL
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 218 FNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKL 269
N LK P + L+++ +NQL+ + L NL L L N L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVY 215
+L L +L L L N P + T KL L+ NQLT + L NL T+
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLL 178
Query: 216 LYFNSLKGTIPSRIF 230
L NSL TIP F
Sbjct: 179 LQENSLY-TIPKGFF 192
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 100/243 (41%), Gaps = 36/243 (14%)
Query: 157 LGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYL 216
L NLT+LV + ++NN P N + L+ L NQ+T P + L NL + L
Sbjct: 85 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 140
Query: 217 YFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELY 276
N++ S + LTSL+Q+ F NQ++ P + L L RLD+SSNK+S
Sbjct: 141 SSNTISDI--SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVS------ 189
Query: 277 DFAXXXXXXXXXXXXXXXXXXXXXXXXXXFLNLSRLGLSACKISKFPVILKTQLQLEWLD 336
D + NL L L+ ++ L + L LD
Sbjct: 190 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLD 248
Query: 337 LSENQIHGRVP--------------GWMWDV----GIHTLSYLDLSQNFLRSIKRLPWKN 378
L+ NQI P + ++ G+ L+ L+L++N L I P N
Sbjct: 249 LANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISN 306
Query: 379 LKN 381
LKN
Sbjct: 307 LKN 309
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 156/357 (43%), Gaps = 55/357 (15%)
Query: 421 LSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNK 480
L+++ + SNN + P + + K +D+ MNN Q A NLT L L N+
Sbjct: 66 LNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 122
Query: 481 LEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQM--FAK 538
+ P L N +L+ +++ +N +S +I G ++L+ F + + A
Sbjct: 123 ITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQL-----SFGNQVTDLKPLAN 174
Query: 539 SCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSN 598
L L+++ N++ L LE L NN I+D P L IL L L L N
Sbjct: 175 LTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 230
Query: 599 RFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSL 658
+ IG T A + L LDL++NQ++ + P L + G N ++ +S
Sbjct: 231 QLKD-IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-----QISNISP 281
Query: 659 LNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNIS 718
L LT T ++L+ N+ + P + L +L L +
Sbjct: 282 LAG-----------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLY 316
Query: 719 HNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVP 775
NN++ P +++LT+L+ L ++NK V + +A+L +++ L+ HNQ+ P
Sbjct: 317 FNNISDISP--VSSLTKLQRLFFANNK-VSDVS-SLANLTNINWLSAGHNQISDLTP 369
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 117/291 (40%), Gaps = 45/291 (15%)
Query: 187 LSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLS 246
L+ +NF NQLT P + L L + + N + P + +LT+L + +NQ++
Sbjct: 69 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 124
Query: 247 GSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAXXXXXXXXXXXXXXXXXXXXXXXXXXF 306
P + L NL RL+LSSN +S L
Sbjct: 125 DIDP--LKNLTNLNRLELSSNTISDISALSGLT-------SLQQLSFGNQVTDLKPLANL 175
Query: 307 LNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHT-LSYLDLSQ 365
L RL +S+ K+S V+ K LE L + NQI P +GI T L L L+
Sbjct: 176 TTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDITP-----LGILTNLDELSLNG 229
Query: 366 NFLRSIKRLPWKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEIPSSFCNLSSIQ 425
N L+ I L +L N +T ++NN ++ P L+ +
Sbjct: 230 NQLKDIGTL--ASLTN------------------LTDLDLANNQISNLAP--LSGLTKLT 267
Query: 426 YLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKL 476
L++ N S P + + + L+L N + I P + K NLT+L L
Sbjct: 268 ELKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLK--NLTYLTL 315
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 613 FSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIIL 672
+ L ++ S+NQLT + P + L ++ NN + +L N + + + I
Sbjct: 66 LNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITPLANLTNLTGLTLFNNQI- 123
Query: 673 TMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLAN 732
D+ + LT ++LSSN I A+ G L SL+ L+ N +T P LAN
Sbjct: 124 ----TDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFG-NQVTDLKP--LAN 174
Query: 733 LTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
LT LE LD+SSNK V I + +A L +L L ++NQ+ P G
Sbjct: 175 LTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLG 217
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 26/144 (18%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIP------------- 202
+L +LT L LDL+NN P + +KL+ L G NQ++ P
Sbjct: 237 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 294
Query: 203 -------SSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE 255
S + L NL + LYFN++ P + SLT L+++ F +N++S SS+
Sbjct: 295 ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLAN 350
Query: 256 LVNLTRLDLSSNKLSGTVELYDFA 279
L N+ L N++S L +
Sbjct: 351 LTNINWLSAGHNQISDLTPLANLT 374
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 679 LQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELES 738
LQ++ L + T+DLS N+ Q +P + L +L L++S N LT +L L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 739 LDLSSNKLVGQIPMQMASLKSLSVLNLSHNQL 770
L L N+L P + L L+L++NQL
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 158 GNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLY 217
G L L LDLS+N + +P + L+ L+ N+LT ++ L L +YL
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 218 FNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKL 269
N LK P + L+++ +NQL+ + L NL L L N L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVY 215
+L L +L L L N P + T KL L+ NQLT + L NL T+
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLL 178
Query: 216 LYFNSLKGTIPSRIF 230
L NSL TIP F
Sbjct: 179 LQENSLY-TIPKGFF 192
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 29/196 (14%)
Query: 587 LPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLT----------GVLPTRYLN 636
L L+ L SN+ GN + L LDLS N L+ G + +YL+
Sbjct: 348 LKSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD 403
Query: 637 -NFRAMIHGENNSVTVE-VKYLSLLNSSYYACYE-SIILTMKGIDLQLERVLTIFTTIDL 693
+F +I +N + +E +++L +S+ E S+ L+++ + +D+
Sbjct: 404 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-----------IYLDI 452
Query: 694 SSNRFQGGIPAIVGKLNSLKGLNISHNNLTGG-IPSSLANLTELESLDLSSNKLVGQIPM 752
S + I L+SL+ L ++ N+ +P L L LDLS +L P
Sbjct: 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512
Query: 753 QMASLKSLSVLNLSHN 768
SL SL VLN+SHN
Sbjct: 513 AFNSLSSLQVLNMSHN 528
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 57/236 (24%)
Query: 306 FLNLSRLGLS---ACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLD 362
FL+LSR GLS C S F I L++LDLS N + ++ G+ L +LD
Sbjct: 375 FLDLSRNGLSFKGCCSQSDFGTI-----SLKYLDLSFNGVITMSSNFL---GLEQLEHLD 426
Query: 363 LSQNFLRSIKRLP-WKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEIPSSFCNL 421
+ L+ + + +L+N + IS+ + F L
Sbjct: 427 FQHSNLKQMSEFSVFLSLRN------------------LIYLDISHTHTRVAFNGIFNGL 468
Query: 422 SSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKL 481
SS++ L+M+ NSF + +P + + NLTFL L+ +L
Sbjct: 469 SSLEVLKMAGNSFQ----------------------ENFLPDIFTELRNLTFLDLSQCQL 506
Query: 482 EGPLPPSLINCFSLHVIDVGNNN---LSGEIPQCFGNSALKVFDMRMNRFNGSIPQ 534
E P + + SL V+++ +NN L +C ++L+V D +N S Q
Sbjct: 507 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL--NSLQVLDYSLNHIMTSKKQ 560
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 706 VGKLNSLKGLNISHNNLTG-GIPSSLANLTELESLDLSSNKL 746
+G L +LK LN++HN + +P +NLT LE LDLSSNK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 11/176 (6%)
Query: 600 FWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLL 659
F G I + +L LD H+ L + + R +I+ + + V +
Sbjct: 406 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF---- 461
Query: 660 NSSYYACYESIILTMKGIDLQLERVLTIFTTI------DLSSNRFQGGIPAIVGKLNSLK 713
N + +L M G Q + IFT + DLS + + P L+SL+
Sbjct: 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521
Query: 714 GLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASL-KSLSVLNLSHN 768
LN+SHNN L L+ LD S N ++ ++ SL+ LNL+ N
Sbjct: 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 160 LTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQ-IPSSVGELANLATVYLYF 218
L L+YLD+S+ +F S L L GN +P EL NL + L
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 219 NSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVN-LTRLDLSSNKL--SGTVEL 275
L+ P+ SL+SL+ ++ HN S+ + Y+ +N L LD S N + S EL
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Query: 276 YDF 278
F
Sbjct: 563 QHF 565
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 162 QLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSL 221
+L LDLS + + S LS L GN + + L++L + +L
Sbjct: 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136
Query: 222 KGTIPSRIFSLTSLKQVDFRHNQL-SGSVPSSVYELVNLTRLDLSSNKL 269
I L +LK+++ HN + S +P L NL LDLSSNK+
Sbjct: 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 100/243 (41%), Gaps = 36/243 (14%)
Query: 157 LGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYL 216
L NLT+LV + ++NN P N + L+ L NQ+T P + L NL + L
Sbjct: 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141
Query: 217 YFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELY 276
N++ S + LTSL+Q+ F NQ++ P + L L RLD+SSNK+S
Sbjct: 142 SSNTISDI--SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVS------ 190
Query: 277 DFAXXXXXXXXXXXXXXXXXXXXXXXXXXFLNLSRLGLSACKISKFPVILKTQLQLEWLD 336
D + NL L L+ ++ L + L LD
Sbjct: 191 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLD 249
Query: 337 LSENQIHGRVP--------------GWMWDV----GIHTLSYLDLSQNFLRSIKRLPWKN 378
L+ NQI P + ++ G+ L+ L+L++N L I P N
Sbjct: 250 LANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISN 307
Query: 379 LKN 381
LKN
Sbjct: 308 LKN 310
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 23/212 (10%)
Query: 566 LEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQ 625
L ++ NN + D P L+ L +L +++ +N+ I + A + L L L +NQ
Sbjct: 70 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ----IADITPLANLTNLTGLTLFNNQ 123
Query: 626 LTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLERVL 685
+T + P + L N + N ++ LS L S + + + DL+ L
Sbjct: 124 ITDIDPLKNLTNLNRLELSSN--TISDISALSGLTSLQQLSFGNQV-----TDLKPLANL 176
Query: 686 TIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNK 745
T +D+SSN+ +++ KL +L+ L ++N ++ P L LT L+ L L+ N+
Sbjct: 177 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232
Query: 746 L--VGQIPMQMASLKSLSVLNLSHNQLEGPVP 775
L +G +ASL +L+ L+L++NQ+ P
Sbjct: 233 LKDIGT----LASLTNLTDLDLANNQISNLAP 260
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 155/357 (43%), Gaps = 55/357 (15%)
Query: 421 LSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNK 480
L+++ + SNN + P + + K +D+ MNN Q A NLT L L N+
Sbjct: 67 LNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 123
Query: 481 LEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQM--FAK 538
+ P L N +L+ +++ +N +S +I G ++L+ F + + A
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQL-----SFGNQVTDLKPLAN 175
Query: 539 SCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSN 598
L L+++ N++ L LE L NN I+D P L IL L L L N
Sbjct: 176 LTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 231
Query: 599 RFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSL 658
+ IG T A + L LDL++NQ++ + P L + G N ++ +S
Sbjct: 232 QLKD-IG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-----QISNISP 282
Query: 659 LNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNIS 718
L LT T ++L+ N+ + P + L +L L +
Sbjct: 283 LAG-----------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317
Query: 719 HNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVP 775
NN++ P +++LT+L+ L +NK V + +A+L +++ L+ HNQ+ P
Sbjct: 318 FNNISDISP--VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP 370
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 117/291 (40%), Gaps = 45/291 (15%)
Query: 187 LSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLS 246
L+ +NF NQLT P + L L + + N + P + +LT+L + +NQ++
Sbjct: 70 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 125
Query: 247 GSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAXXXXXXXXXXXXXXXXXXXXXXXXXXF 306
P + L NL RL+LSSN +S L
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISDISALSGLT-------SLQQLSFGNQVTDLKPLANL 176
Query: 307 LNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHT-LSYLDLSQ 365
L RL +S+ K+S V+ K LE L + NQI P +GI T L L L+
Sbjct: 177 TTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDITP-----LGILTNLDELSLNG 230
Query: 366 NFLRSIKRLPWKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEIPSSFCNLSSIQ 425
N L+ I L +L N +T ++NN ++ P L+ +
Sbjct: 231 NQLKDIGTL--ASLTN------------------LTDLDLANNQISNLAP--LSGLTKLT 268
Query: 426 YLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKL 476
L++ N S P + + + L+L N + I P + K NLT+L L
Sbjct: 269 ELKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLK--NLTYLTL 316
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 613 FSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIIL 672
+ L ++ S+NQLT + P + L ++ NN + +L N + + + I
Sbjct: 67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITPLANLTNLTGLTLFNNQI- 124
Query: 673 TMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLAN 732
D+ + LT ++LSSN I A+ G L SL+ L+ N +T P LAN
Sbjct: 125 ----TDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFG-NQVTDLKP--LAN 175
Query: 733 LTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
LT LE LD+SSNK V I + +A L +L L ++NQ+ P G
Sbjct: 176 LTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLG 218
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 26/144 (18%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIP------------- 202
+L +LT L LDL+NN P + +KL+ L G NQ++ P
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 295
Query: 203 -------SSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE 255
S + L NL + LYFN++ P + SLT L+++ F +N++S SS+
Sbjct: 296 ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN 351
Query: 256 LVNLTRLDLSSNKLSGTVELYDFA 279
L N+ L N++S L +
Sbjct: 352 LTNINWLSAGHNQISDLTPLANLT 375
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 177 IPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIF-SLTSL 235
+P +++ YL+ NQ+T P L NL +YL N L G +P +F SLT L
Sbjct: 34 VPAGIPTNAQILYLH--DNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQL 90
Query: 236 KQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKLS 270
+D NQL+ +PS+V++ LV+L L + NKL+
Sbjct: 91 TVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT 125
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 151 GSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSV-GELA 209
S+P + Q++YL +N P +F + L L G NQL G +P V L
Sbjct: 32 ASVPAGIPTNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 210 NLATVYLYFNSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNK 268
L + L N L +PS +F L LK++ N+L+ +P + L +LT L L N+
Sbjct: 89 QLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146
Query: 269 L 269
L
Sbjct: 147 L 147
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 30/130 (23%)
Query: 693 LSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLAN-LTELESLDLSSNKL----- 746
L N+ P + L +LK L + N L G +P + + LT+L LDL +N+L
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 747 ------------------VGQIPMQMASLKSLSVLNLSHNQLEGPVPRGTQFNTFQNDSY 788
+ ++P + L L+ L L NQL+ +P G F+ + ++
Sbjct: 106 AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPHGA-FDRLSSLTH 163
Query: 789 A---GNPGLC 795
A GNP C
Sbjct: 164 AYLFGNPWDC 173
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 679 LQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELES 738
LQ++ L + T+DLS N+ Q +P + L +L L++S N LT +L L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 739 LDLSSNKLVGQIPMQMASLKSLSVLNLSHNQL 770
L L N+L P + L L+L++NQL
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 158 GNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLY 217
G L L LDLS+N + +P + L+ L+ N+LT ++ L L +YL
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 218 FNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKL 269
N LK P + L+++ +NQL+ + L NL L L N L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVY 215
+L L +L L L N P + T KL L+ NQLT + L NL T+
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLL 178
Query: 216 LYFNSLKGTIPSRIF 230
L NSL TIP F
Sbjct: 179 LQENSLY-TIPKGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 679 LQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELES 738
LQ++ L + T+DLS N+ Q +P + L +L L++S N LT +L L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 739 LDLSSNKLVGQIPMQMASLKSLSVLNLSHNQL 770
L L N+L P + L L+L++NQL
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 158 GNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLY 217
G L L LDLS+N + +P + L+ L+ N+LT ++ L L +YL
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 218 FNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKL 269
N LK P + L+++ +NQL+ + L NL L L N L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVY 215
+L L +L L L N P + T KL L+ NQLT + L NL T+
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLL 178
Query: 216 LYFNSLKGTIPSRIF 230
L NSL TIP F
Sbjct: 179 LQENSLY-TIPKGFF 192
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 29/196 (14%)
Query: 587 LPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLT----------GVLPTRYLN 636
L L+ L SN+ GN + L LDLS N L+ G +YL+
Sbjct: 324 LKSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 637 -NFRAMIHGENNSVTVE-VKYLSLLNSSYYACYE-SIILTMKGIDLQLERVLTIFTTIDL 693
+F +I +N + +E +++L +S+ E S+ L+++ + +D+
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-----------IYLDI 428
Query: 694 SSNRFQGGIPAIVGKLNSLKGLNISHNNLTGG-IPSSLANLTELESLDLSSNKLVGQIPM 752
S + I L+SL+ L ++ N+ +P L L LDLS +L P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 753 QMASLKSLSVLNLSHN 768
SL SL VLN+SHN
Sbjct: 489 AFNSLSSLQVLNMSHN 504
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 706 VGKLNSLKGLNISHNNLTG-GIPSSLANLTELESLDLSSNKL 746
+G L +LK LN++HN + +P +NLT LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 98/259 (37%), Gaps = 65/259 (25%)
Query: 311 RLGLSACKISKFPVILKTQLQ--------------------LEWLDLSENQIHGRVPGWM 350
L L CK +FP + L+ LE+LDLS N + +
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 351 WDVGIHTLSYLDLS--------QNFL--RSIKRLPWK--NLKNXXXXXXXXXXXXXXXXX 398
D G +L YLDLS NFL ++ L ++ NLK
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN----- 422
Query: 399 XMTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQ 458
+ IS+ + F LSS++ L+M+ NSF +
Sbjct: 423 -LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ----------------------E 459
Query: 459 GIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSG--EIP-QCFGN 515
+P + + NLTFL L+ +LE P + + SL V+++ +NN P +C
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL-- 517
Query: 516 SALKVFDMRMNRFNGSIPQ 534
++L+V D +N S Q
Sbjct: 518 NSLQVLDYSLNHIMTSKKQ 536
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 11/176 (6%)
Query: 600 FWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLL 659
F G I + +L LD H+ L + + R +I+ + + V +
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF---- 437
Query: 660 NSSYYACYESIILTMKGIDLQLERVLTIFTTI------DLSSNRFQGGIPAIVGKLNSLK 713
N + +L M G Q + IFT + DLS + + P L+SL+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 714 GLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASL-KSLSVLNLSHN 768
LN+SHNN L L+ LD S N ++ ++ SL+ LNL+ N
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 160 LTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQ-IPSSVGELANLATVYLYF 218
L L+YLD+S+ +F S L L GN +P EL NL + L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 219 NSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVN-LTRLDLSSNKL--SGTVEL 275
L+ P+ SL+SL+ ++ HN S+ + Y+ +N L LD S N + S EL
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 276 YDF 278
F
Sbjct: 539 QHF 541
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 162 QLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSL 221
+L LDLS + + S LS L GN + + L++L + +L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 222 KGTIPSRIFSLTSLKQVDFRHNQL-SGSVPSSVYELVNLTRLDLSSNKL 269
I L +LK+++ HN + S +P L NL LDLSSNK+
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 162 QLVYLDLSNNSFIGEIPN-MFTNQSKLSYLNFGGNQLTGQIPSSV-GELANLATVYLYFN 219
Q YLDL NS + +PN +F + L+ L GGN+L +P+ V +L +L + L N
Sbjct: 29 QTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTN 86
Query: 220 SLKGTIPSRIF-SLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
L+ ++P+ +F LT LK++ NQL S+P V++ L L L L N+L
Sbjct: 87 QLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 160 LTQLVYLDLSNNSFIGEIPN-MFTNQSKLSYLNFGGNQLTGQIPSSV-GELANLATVYLY 217
LT L L L N + +PN +F + L+YLN NQL +P+ V +L L + L
Sbjct: 51 LTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALN 108
Query: 218 FNSLKGTIPSRIF-SLTSLKQVDFRHNQLSGSVPSSVYE 255
N L+ ++P +F LT LK + NQL SVP V++
Sbjct: 109 TNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 145
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Query: 685 LTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSN 744
LT T + L N+ Q + KL SL LN+S N L LT+L+ L L++N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 745 KLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRGT--QFNTFQNDSYAGNPGLCGFP 798
+L L L L L NQL+ VP G + + Q NP C P
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 160 LTQLVYLDLSNNSFIGEIPN-MFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYF 218
LT L YL+LS N + +PN +F ++L L NQL +L L + LY
Sbjct: 75 LTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133
Query: 219 NSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVY 254
N LK ++P +F LTSL+ + N + P Y
Sbjct: 134 NQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 169
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
Query: 185 SKLSYLNFGGNQLTGQIPSSV-GELANLATVYLYFNSLKGTIPSRIFS-LTSLKQVDFRH 242
++ +YL+ N L +P+ V EL +L +YL N L+ ++P+ +F+ LTSL ++
Sbjct: 28 AQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85
Query: 243 NQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
NQL S+P+ V++ L L L L++N+L
Sbjct: 86 NQLQ-SLPNGVFDKLTQLKELALNTNQL 112
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 8/137 (5%)
Query: 419 CNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNG 478
C+ ++++ S IP + +LDL N+ + + + + +LT L L G
Sbjct: 7 CSGTTVECYSQGRTSVPTGIP-----AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG 61
Query: 479 NKLEGPLPPSLINCF-SLHVIDVGNNNLSGEIPQCFGN-SALKVFDMRMNRFNGSIPQMF 536
NKL+ LP + N SL +++ N L F + LK + N+ +F
Sbjct: 62 NKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF 120
Query: 537 AKSCDLRSLNLNGNQLE 553
K L+ L L NQL+
Sbjct: 121 DKLTQLKDLRLYQNQLK 137
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 199 GQIPSSVGELANLATVYLYFNSLKGTIPSRIF-SLTSLKQVDFRHNQLSGSVPSSVY-EL 256
G+ G A + L NSLK ++P+ +F LTSL Q+ N+L S+P+ V+ +L
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKL 75
Query: 257 VNLTRLDLSSNKL 269
+LT L+LS+N+L
Sbjct: 76 TSLTYLNLSTNQL 88
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 168 LSNNSFIGEIPN--MFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTI 225
L N++ +G I + +F L L NQLTG P++ +++ + L N +K
Sbjct: 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94
Query: 226 PSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFA 279
L LK ++ NQ+S +P S L +LT L+L+SN + L FA
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 669 SIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPA--IVGKLNSLKGLNISHNNLTGGI 726
++ T +G+ ++ R + + TT L ++ G I + + G+L L L + N LTG
Sbjct: 12 TVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70
Query: 727 PSSLANLTELESLDLSSNKLVGQIPMQM-ASLKSLSVLNLSHNQLEGPVPRG-TQFNTFQ 784
P++ + ++ L L NK + +I +M L L LNL NQ+ +P N+
Sbjct: 71 PNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129
Query: 785 NDSYAGNPGLCGFPLS 800
+ + A NP C L+
Sbjct: 130 SLNLASNPFNCNCHLA 145
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 711 SLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQL 770
SL LN+S N LT I L ++ LDL SNK + IP Q+ L++L LN++ NQL
Sbjct: 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQL 456
Query: 771 EGPVPRGT--QFNTFQNDSYAGNPGLCGFP 798
+ VP G + + Q NP C P
Sbjct: 457 KS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 28/204 (13%)
Query: 541 DLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRF 600
++++ ++G ++ L PS I+ +L LD NN + DT L EL LIL+ N+
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKIS-PFLH-LDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
Query: 601 WGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLN 660
+ L+ LD+S N ++ + E K L LN
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVS---------------YDEKKGDCSWTKSLLSLN 405
Query: 661 SSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHN 720
S ++I + R+ +DL SN+ + IP V KL +L+ LN++ N
Sbjct: 406 MSSNILTDTIFRCLPP------RI----KVLDLHSNKIKS-IPKQVVKLEALQELNVASN 454
Query: 721 NLTGGIPSSLANLTELESLDLSSN 744
L LT L+ + L +N
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 707 GKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKL--VGQIPMQMASLKSLSVLN 764
K++ L+ S+N LT + + +LTELE+L L N+L + +I +KSL L+
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 765 LSHNQLEGPVPRG 777
+S N + +G
Sbjct: 381 ISQNSVSYDEKKG 393
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 149 FTGSIPPSLGNLTQLVYLDLSNNSF--IGEIPNMFTNQSKLSYLNFGGNQLT-GQIPSSV 205
T ++ + G+LT+L L L N + +I M T L L+ N ++ +
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 206 GELANLATVYLYFNSLKGTI----PSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTR 261
+L ++ + N L TI P RI K +D N++ S+P V +L L
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPPRI------KVLDLHSNKIK-SIPKQVVKLEALQE 448
Query: 262 LDLSSNKLSGT 272
L+++SN+L
Sbjct: 449 LNVASNQLKSV 459
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 568 VLDIGNNHINDTFPYWLEILPELRVLILRSNRF-WGPIGNTKTRAPFSKLRILDLSHNQL 626
+L+I N+I++ + + L +LR+LI+ NR + I K +L LDLSHN+L
Sbjct: 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ---ELEYLDLSHNKL 81
Query: 627 TGV 629
+
Sbjct: 82 VKI 84
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 706 VGKLNSLKGLNISHNNLTG-GIPSSLANLTELESLDLSSNKL 746
+G L +LK LN++HN + +P +NLT LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVY 215
S + +L LDLS + + S LS L GN + + L++L +
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 216 LYFNSLKGTIPSRIFSLTSLKQVDFRHNQL-SGSVPSSVYELVNLTRLDLSSNKL 269
+L I L +LK+++ HN + S +P L NL LDLSSNK+
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 706 VGKLNSLKGLNISHNNLTG-GIPSSLANLTELESLDLSSNKL 746
+G L +LK LN++HN + +P +NLT LE LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 162 QLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSL 221
+L LDLS + + S LS L GN + + L++L + +L
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 222 KGTIPSRIFSLTSLKQVDFRHNQL-SGSVPSSVYELVNLTRLDLSSNKL 269
I L +LK+++ HN + S +P L NL LDLSSNK+
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 706 VGKLNSLKGLNISHNNLTG-GIPSSLANLTELESLDLSSNKL 746
+G L +LK LN++HN + +P +NLT LE LDLSSNK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 162 QLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSL 221
+L LDLS + + S LS L GN + + L++L + +L
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNL 114
Query: 222 KGTIPSRIFSLTSLKQVDFRHNQL-SGSVPSSVYELVNLTRLDLSSNKL 269
I L +LK+++ HN + S +P L NL LDLSSNK+
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 706 VGKLNSLKGLNISHNNLTG-GIPSSLANLTELESLDLSSNKL 746
+G L +LK LN++HN + +P +NLT LE LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 162 QLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSL 221
+L LDLS + + S LS L GN + + L++L + +L
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 222 KGTIPSRIFSLTSLKQVDFRHNQL-SGSVPSSVYELVNLTRLDLSSNKL 269
I L +LK+++ HN + S +P L NL LDLSSNK+
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 706 VGKLNSLKGLNISHNNLTG-GIPSSLANLTELESLDLSSNKL 746
+G L +LK LN++HN + +P +NLT LE LDLSSNK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 162 QLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSL 221
+L LDLS + + S LS L GN + + L++L + +L
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 114
Query: 222 KGTIPSRIFSLTSLKQVDFRHNQL-SGSVPSSVYELVNLTRLDLSSNKL 269
I L +LK+++ HN + S +P L NL LDLSSNK+
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 15/232 (6%)
Query: 543 RSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWG 602
R LNL N ++ + + + R+LE+L + N + LP L L L NR
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL-- 95
Query: 603 PIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLN---NFRAMIHGENNSVTV--EVKYLS 657
T+ SKLR L L +N + + P+ N + R + GE + E +
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLRRLDLGELKRLEYISEAAFEG 154
Query: 658 LLNSSYYACYESIILTMKGI-DLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLN 716
L+N Y + L M + D+ L ++LS NR P L SL+ L
Sbjct: 155 LVNLRY------LNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 717 ISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHN 768
+ H + ++ +L LE L+LS N L+ L L ++L+HN
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 34/232 (14%)
Query: 151 GSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELAN 210
+P S+ T+ YL+L NS + F + L L N + + L +
Sbjct: 27 AEVPASIPVNTR--YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 211 LATVYLYFNSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYELV-NLTRLDLSSNK 268
L T+ L+ N L T+P++ F L+ L+++ R+N + S+PS + V +L RLDL K
Sbjct: 85 LNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELK 142
Query: 269 LSGTVELYDFAXXXXXXXXXXXXXXXXXXXXXXXXXXFLNLSRLGLSACKISKFPVILKT 328
+ F +NL L L C + P L
Sbjct: 143 RLEYISEAAFE-------------------------GLVNLRYLNLGMCNLKDIPN-LTA 176
Query: 329 QLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRSIKRLPWKNLK 380
++LE L+LS N++ PG G+ +L L L + +I+R + +LK
Sbjct: 177 LVRLEELELSGNRLDLIRPGSF--QGLTSLRKLWLMHAQVATIERNAFDDLK 226
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 160 LTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFN 219
L L YL+L + + +IPN+ T +L L GN+L P S L +L ++L +
Sbjct: 155 LVNLRYLNLGMCN-LKDIPNL-TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL-MH 211
Query: 220 SLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSN 267
+ TI F L SL++++ HN L S+P ++ L L R+ L+ N
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHN 260
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 157 LGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYL 216
LG L +L Y+ S +F G + L YLN G L IP+ + L L + L
Sbjct: 138 LGELKRLEYI--SEAAFEGLV--------NLRYLNLGMCNLK-DIPN-LTALVRLEELEL 185
Query: 217 YFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKL 269
N L P LTSL+++ H Q++ ++ +L +L L+LS N L
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 122/314 (38%), Gaps = 55/314 (17%)
Query: 506 SGEIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRY 565
+G P+C ++ + RF ++P+ + R L+L N+++ + +
Sbjct: 1 TGCPPRCECSAQDRAVLCHRKRF-VAVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPH 57
Query: 566 LEVLDIGNNHINDTFPYWLEILPELRVLILRSNRF-WGPIGNTKTRAPFSKLRILDLSHN 624
LE L++ N ++ P L LR L LRSNR P+G S L LD+S N
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG---VFTGLSNLTKLDISEN 114
Query: 625 QLTGVLPTRY--LNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIILT--------- 673
++ +L + L N +++ G+N+ V + + S LNS E LT
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Query: 674 MKGIDLQLERVLTIFTTIDLSSNRFQ---------------------------------- 699
+ G+ + R L I D S R
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234
Query: 700 --GGIPAI-VGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMAS 756
+P + V L L+ LN+S+N ++ S L L L+ + L +L P
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294
Query: 757 LKSLSVLNLSHNQL 770
L L VLN+S NQL
Sbjct: 295 LNYLRVLNVSGNQL 308
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 127/319 (39%), Gaps = 20/319 (6%)
Query: 438 IPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHV 497
+P+ + T + LDL N + + +A +L L+LN N + P + N F+L
Sbjct: 26 VPEGIPTET-RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84
Query: 498 IDVGNNNLSGEIPQCF-GNSALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPL 556
+ + +N L F G S L D+ N+ + MF +L+SL + N L
Sbjct: 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144
Query: 557 SPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKL 616
+ LE L + ++ L L L VL LR + R +L
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR--LYRL 202
Query: 617 RILDLSH-NQLTGVLPT-RYLNNFRAMIHGENNSVTV------EVKYLSLLNSSYYACYE 668
++L++SH L + P Y N ++ N V + YL LN SY
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY----- 257
Query: 669 SIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPS 728
+ I T++G L L I L + P LN L+ LN+S N LT S
Sbjct: 258 NPISTIEGSMLH---ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314
Query: 729 SLANLTELESLDLSSNKLV 747
++ LE+L L SN L
Sbjct: 315 VFHSVGNLETLILDSNPLA 333
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 177 IPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLK 236
+P +++L L+ G N++ +L + L N + P +L +L+
Sbjct: 26 VPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 237 QVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
+ R N+L +P V+ L NLT+LD+S NK+
Sbjct: 84 TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI 116
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 471 LTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLS---GEIPQCFGNSALKVFDMRMNR 527
LT L LNGN L LP + N +L V+D+ +N L+ E+ CF FD +
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT- 306
Query: 528 FNGSIPQMFAKSCDLRSLNLNGNQLE 553
++P F C+L+ L + GN LE
Sbjct: 307 ---TLPWEFGNLCNLQFLGVEGNPLE 329
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 21/100 (21%)
Query: 400 MTIFSISNN----------YLTG----EIPSSFCNLSSIQYLEMSNN---SFSGQIPQCL 442
+ IF+IS N YL G E+P+ NLS+++ L++S+N S ++ C
Sbjct: 234 LQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293
Query: 443 VNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLE 482
F D N +P + CNL FL + GN LE
Sbjct: 294 QLKYFYFFD----NMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 702 IPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLS 761
+PA + L++L+ L++SHN LT +P+ L + +L+ N +V +P + +L +L
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQ 319
Query: 762 VLNLSHNQLE 771
L + N LE
Sbjct: 320 FLGVEGNPLE 329
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 15/232 (6%)
Query: 543 RSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWG 602
R LNL N ++ + + + R+LE+L + N + LP L L L NR
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL-- 95
Query: 603 PIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLN---NFRAMIHGENNSVTV--EVKYLS 657
T+ SKLR L L +N + + P+ N + R + GE + E +
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLRRLDLGELKRLEYISEAAFEG 154
Query: 658 LLNSSYYACYESIILTMKGI-DLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLN 716
L+N Y + L M + D+ L ++LS NR P L SL+ L
Sbjct: 155 LVNLRY------LNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 717 ISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHN 768
+ H + ++ +L LE L+LS N L+ L L ++L+HN
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 34/232 (14%)
Query: 151 GSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELAN 210
+P S+ T+ YL+L NS + F + L L N + + L +
Sbjct: 27 AEVPASIPVNTR--YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 211 LATVYLYFNSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYELV-NLTRLDLSSNK 268
L T+ L+ N L T+P++ F L+ L+++ R+N + S+PS + V +L RLDL K
Sbjct: 85 LNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELK 142
Query: 269 LSGTVELYDFAXXXXXXXXXXXXXXXXXXXXXXXXXXFLNLSRLGLSACKISKFPVILKT 328
+ F +NL L L C + P L
Sbjct: 143 RLEYISEAAFE-------------------------GLVNLRYLNLGMCNLKDIPN-LTA 176
Query: 329 QLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRSIKRLPWKNLK 380
++LE L+LS N++ PG G+ +L L L + +I+R + +LK
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQ--GLTSLRKLWLMHAQVATIERNAFDDLK 226
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 160 LTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFN 219
L L YL+L + + +IPN+ T +L L GN+L P S L +L ++L +
Sbjct: 155 LVNLRYLNLGMCN-LKDIPNL-TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL-MH 211
Query: 220 SLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSN 267
+ TI F L SL++++ HN L S+P ++ L L R+ L+ N
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHN 260
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 157 LGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYL 216
LG L +L Y+ S +F G + L YLN G L IP+ + L L + L
Sbjct: 138 LGELKRLEYI--SEAAFEGLV--------NLRYLNLGMCNL-KDIPN-LTALVRLEELEL 185
Query: 217 YFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKL 269
N L P LTSL+++ H Q++ ++ +L +L L+LS N L
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 34/231 (14%)
Query: 152 SIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANL 211
+P + T+L L+L N N F + L L N + + LANL
Sbjct: 57 EVPDGISTNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 212 ATVYLYFNSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYELV-NLTRLDLSSNKL 269
T+ L+ N L TIP+ F L+ LK++ R+N + S+PS + + +L RLDL K
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKR 172
Query: 270 SGTVELYDFAXXXXXXXXXXXXXXXXXXXXXXXXXXFLNLSRLGLSACKISKFPVILKTQ 329
+ F NL L L+ C + + P L
Sbjct: 173 LSYISEGAFEGLS-------------------------NLRYLNLAMCNLREIPN-LTPL 206
Query: 330 LQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRSIKRLPWKNLK 380
++L+ LDLS N + PG G+ L L + Q+ ++ I+R + NL+
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQ 255
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 160 LTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFN 219
L+ L YL+L+ + + EIPN+ T KL L+ GN L+ P S L +L +++ +
Sbjct: 184 LSNLRYLNLAMCN-LREIPNL-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 220 SLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSN 267
++ + +L SL +++ HN L+ +P ++ L +L R+ L N
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 151 GSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELAN 210
S+P + TQ+++L + N P +F + ++L+YLN NQLT +L
Sbjct: 32 ASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 211 LATVYLYFNSLKGTIPSRIF-SLTSLKQVDFRHN 243
L + L+ N LK +IP +F +L SL + +N
Sbjct: 90 LTHLALHINQLK-SIPMGVFDNLKSLTHIYLFNN 122
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 103/419 (24%), Positives = 166/419 (39%), Gaps = 57/419 (13%)
Query: 422 SSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKL 481
S I Y + N Q+P+ + + V ++DL +N+ + ++++ +L FLK+
Sbjct: 9 SVIGYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKV----- 61
Query: 482 EGPLPPSLI--NCF----SLHVIDVGNNN-LSGEIPQCFGNSALKVFDMRMNRFNGSI-- 532
E P +I N F SL ++ + N L E G + L+V + +G++
Sbjct: 62 EQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121
Query: 533 PQMFAKSCDLRSLNLNGNQLEGPLSPS--LINCRYLEVLDIGNNHIN-----DTFPYWLE 585
F L L L N ++ + P+ +N R VLD+ N + D + +
Sbjct: 122 GNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180
Query: 586 ILPELR---VLILRSNRFWGPIGNTKTRAPFSKLRI--LDLSHNQLTGVLPTRYLNNFRA 640
LR + + N +W +G K PF I LDLS N + R+ F A
Sbjct: 181 HFTLLRLSSITLQDMNEYW--LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF---FDA 235
Query: 641 MIHGENNSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQ---------------LERVL 685
+ + S+ + Y + + + T KG++ L+ V
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295
Query: 686 TIFTTID---LSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSL-ANLTELESLDL 741
+ FT ++ L+ N L L LN+S N L G I S + NL +LE LDL
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDL 354
Query: 742 SSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRGT--QFNTFQNDSYAGNPGLCGFP 798
S N + L +L L L NQL+ VP G + + Q NP C P
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 35/170 (20%)
Query: 306 FLNLSRLGLSACKISKFPV--ILKTQL----QLEWLDLSENQIHGRVPGWMWDVGIHTLS 359
F L G+ C +SK + +LK+ LE L L++N+I+ W G+ L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--GLTHLL 326
Query: 360 YLDLSQNFLRSIKRLPWKNLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEIPSSFC 419
L+LSQNFL SI ++NL + + +S N++ SF
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDK------------------LEVLDLSYNHIRALGDQSFL 368
Query: 420 NLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDC 469
L +++ L + N +P + + R+ + Q I T DC
Sbjct: 369 GLPNLKELALDTNQLKS-VPDGIFD--------RLTSLQKIWLHTNPWDC 409
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 159 NLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGE-LANLATVYLY 217
+ T L L L+ N N F + L LN N L G I S + E L L + L
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLS 355
Query: 218 FNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSN 267
+N ++ L +LK++ NQL SVP +++ L +L ++ L +N
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 12/122 (9%)
Query: 157 LGNLTQLVYLDLSNNSFIGEIP-NMFTNQSKLSYLNFGGNQLTGQIPSSV-GELANLATV 214
L ++ L +L+L N I E+P ++F + L + FG N+L Q+P + G++ L +
Sbjct: 143 LTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLR-QMPRGIFGKMPKLKQL 199
Query: 215 YLYFNSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYELVNLTR-LDLSSNKLSGT 272
L N LK ++P IF LTSL+++ N S P Y L+R L+ +S K G+
Sbjct: 200 NLASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY----LSRWLNKNSQKEQGS 254
Query: 273 VE 274
+
Sbjct: 255 AK 256
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 164 VYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKG 223
L+L +N +F ++L+ L+ NQ+ +L L +YL+ N L+
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ- 89
Query: 224 TIPSRIF-SLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKLSGTVELYDF 278
++P+ +F LT LK++ NQL SVP +++ L +L ++ L +N + D+
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 159 NLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSV-GELANLATVYLY 217
LTQL L LS N +F +KL+ L N+L +P+ V +L L + L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALD 108
Query: 218 FNSLKGTIPSRIFS-LTSLKQVDFRHNQLSGSVPSSVY 254
N LK ++P IF LTSL+++ N S P Y
Sbjct: 109 TNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 113/271 (41%), Gaps = 52/271 (19%)
Query: 545 LNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRF---- 600
LNLN Q+E + + ++ L +G N I P+ + +P L VL+L N
Sbjct: 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133
Query: 601 WGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGEN---NSVTVEVKYLS 657
G NT KL L +S+N L + + F+A +N +S + LS
Sbjct: 134 RGIFHNT------PKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDLS 183
Query: 658 LLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLN-SLKGLN 716
L+ S ++A +L+ I + +E +D S N I + G +N L L
Sbjct: 184 LIPSLFHANVSYNLLSTLAIPIAVEE-------LDASHN----SINVVRGPVNVELTILK 232
Query: 717 ISHNNLT---------GGIPSSLA-------------NLTELESLDLSSNKLVGQIPMQM 754
+ HNNLT G + L+ + LE L +S+N+LV + +
Sbjct: 233 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG 291
Query: 755 ASLKSLSVLNLSHNQLEGPVPRGTQFNTFQN 785
+ +L VL+LSHN L QF+ +N
Sbjct: 292 QPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 322
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 27/233 (11%)
Query: 415 PSSFCNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRM--NNFQGIIPQTYAKDCNLT 472
P F N+ + L + N S +P+ + ++T K L M NN + I T+ +L
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 473 FLKLNGNKL---EGPLPPSLINC-------------FSLHVIDVGNNNLSGEIPQCFGNS 516
L+L+ N+L + L PSL + ++ +D +N+++ + + N
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN--VVRGPVNV 226
Query: 517 ALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHI 576
L + ++ N + L ++L+ N+LE + + + LE L I NN +
Sbjct: 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Query: 577 NDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGV 629
+ + +P L+VL L N + + + F +L L L HN + +
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHL---LHVERNQPQFDRLENLYLDHNSIVTL 333
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 94/241 (39%), Gaps = 46/241 (19%)
Query: 310 SRLGLSACKISKFPV-ILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLS---- 364
+RL L + K+ P + QL L LS N + + D G +L YLDLS
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90
Query: 365 ----QNFL--RSIKRLPWK--NLKNXXXXXXXXXXXXXXXXXXMTIFSISNNYLTGEIPS 416
NFL ++ L ++ NLK + IS+ +
Sbjct: 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN------LIYLDISHTHTRVAFNG 144
Query: 417 SFCNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKL 476
F LSS++ L+M+ NSF + +P + + NLTFL L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQ----------------------ENFLPDIFTELRNLTFLDL 182
Query: 477 NGNKLEGPLPPSLINCFSLHVIDVGNNNLSG--EIP-QCFGNSALKVFDMRMNRFNGSIP 533
+ +LE P + + SL V+++ +NN P +C +L+V D +N S
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--SLQVLDYSLNHIMTSKK 240
Query: 534 Q 534
Q
Sbjct: 241 Q 241
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 11/176 (6%)
Query: 600 FWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLL 659
F G I + +L LD H+ L + + R +I+ + + V + +
Sbjct: 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 660 NSSYYACYESIILTMKGIDLQLERVLTIFTTI------DLSSNRFQGGIPAIVGKLNSLK 713
N + E +L M G Q + IFT + DLS + + P L+SL+
Sbjct: 147 NG--LSSLE--VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 714 GLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASL-KSLSVLNLSHN 768
LN+SHNN L L+ LD S N ++ ++ SL+ LNL+ N
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 159 NLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQ-IPSSVGELANLATVYLY 217
+L L+YLD+S+ +F S L L GN +P EL NL + L
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 218 FNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVN-LTRLDLSSNKL--SGTVE 274
L+ P+ SL+SL+ ++ HN S+ + Y+ +N L LD S N + S E
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242
Query: 275 LYDF 278
L F
Sbjct: 243 LQHF 246
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 711 SLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQL 770
S+ LN+S N LTG + L +++ LDL +N+++ IP + L++L LN++ NQL
Sbjct: 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQL 485
Query: 771 EGPVPRGT--QFNTFQNDSYAGNPGLCGFP 798
+ VP G + + Q NP C P
Sbjct: 486 KS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 113/271 (41%), Gaps = 52/271 (19%)
Query: 545 LNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRF---- 600
LNLN Q+E + + ++ L +G N I P+ + +P L VL+L N
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139
Query: 601 WGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGEN---NSVTVEVKYLS 657
G NT KL L +S+N L + + F+A +N +S + LS
Sbjct: 140 RGIFHNT------PKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDLS 189
Query: 658 LLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLN-SLKGLN 716
L+ S ++A +L+ I + +E +D S N I + G +N L L
Sbjct: 190 LIPSLFHANVSYNLLSTLAIPIAVEE-------LDASHN----SINVVRGPVNVELTILK 238
Query: 717 ISHNNLT---------GGIPSSLA-------------NLTELESLDLSSNKLVGQIPMQM 754
+ HNNLT G + L+ + LE L +S+N+LV + +
Sbjct: 239 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG 297
Query: 755 ASLKSLSVLNLSHNQLEGPVPRGTQFNTFQN 785
+ +L VL+LSHN L QF+ +N
Sbjct: 298 QPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 328
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 27/233 (11%)
Query: 415 PSSFCNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRM--NNFQGIIPQTYAKDCNLT 472
P F N+ + L + N S +P+ + ++T K L M NN + I T+ +L
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 473 FLKLNGNKL---EGPLPPSLINC-------------FSLHVIDVGNNNLSGEIPQCFGNS 516
L+L+ N+L + L PSL + ++ +D +N+++ + + N
Sbjct: 175 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN--VVRGPVNV 232
Query: 517 ALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHI 576
L + ++ N + L ++L+ N+LE + + + LE L I NN +
Sbjct: 233 ELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
Query: 577 NDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGV 629
+ + +P L+VL L N + + + F +L L L HN + +
Sbjct: 291 V-ALNLYGQPIPTLKVLDLSHNHL---LHVERNQPQFDRLENLYLDHNSIVTL 339
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 164/395 (41%), Gaps = 74/395 (18%)
Query: 430 SNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQ---TYAKDCNLTFLKLNGNKLEGPLP 486
SN+ S ++P+ +K LD + N + + + + NL+ L LNGN + G +
Sbjct: 138 SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIAG-IE 195
Query: 487 PSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVF------DMRMNRFNGSIPQMFAKSC 540
P + ++ G I + NS ++ DM + P +F C
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS---PAVFEGLC 252
Query: 541 DL--RSLNLNGNQLEGPLSPSLINC-RYLEVLDIGNNHINDTFPYWLEILPELRVLILRS 597
++ S+NL + +S + +C L+ LD+ H+++ P L L L+ L+L +
Sbjct: 253 EMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSA 310
Query: 598 NRFWGPI----------------GNTK-------TRAPFSKLRILDLSHNQLTGV----L 630
N+F GNTK LR LDLSH+ + L
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370
Query: 631 PTRYLNNFRAMIHGENNSVTV------EVKYLSLLNSSYYACYESIILTMKGI-----DL 679
R L++ +++ N +++ E L LL+ ++ L +K +L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR------LKVKDAQSPFQNL 424
Query: 680 QLERVLTI-FTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGG---IPSSLANLTE 735
L +VL + + +D+SS + G+PA L+ LN+ N+ G +SL L
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPA-------LQHLNLQGNHFPKGNIQKTNSLQTLGR 477
Query: 736 LESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQL 770
LE L LS L SLK ++ ++LSHN+L
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 138/321 (42%), Gaps = 55/321 (17%)
Query: 494 SLHVIDVGNNNLSG-EIPQCFGNSALKVFDMRMNRFNG-SIPQM--FAKSCDLRSLNLNG 549
+L + +G+N++S ++P+ F LKV D + N + S M ++ +L SLNLNG
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNG 188
Query: 550 NQLEGPLSPSLINCRYLEVLDIG-------------NNHI-------------NDTFPYW 583
N + G + P + + L+ G N+ I D P
Sbjct: 189 NDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247
Query: 584 LEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRY--LNNFRAM 641
E L E+ V + + + ++ T FS L+ LDL+ L+ LP+ L+ + +
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKL 306
Query: 642 IHGENNSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLE------RVLTIFTTIDLSS 695
+ N + + L +++S + L++KG +LE L +DLS
Sbjct: 307 VLSAN-----KFENLCQISASNFPSLTH--LSIKGNTKRLELGTGCLENLENLRELDLSH 359
Query: 696 NRFQGG--IPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLV---GQI 750
+ + + L+ L+ LN+S+N + +LE LDL+ +L Q
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 751 PMQMASLKSLSVLNLSHNQLE 771
P Q +L L VLNLSH+ L+
Sbjct: 420 PFQ--NLHLLKVLNLSHSLLD 438
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 144/355 (40%), Gaps = 73/355 (20%)
Query: 403 FSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVN-STVKFLDLRMNNFQGII 461
F+IS+N +F S +Q L+++ S ++P LV ST+K L L N F+ +
Sbjct: 267 FNISSN--------TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317
Query: 462 PQTYAKDCNLTFLKLNGNKLEGPLPPS-LINCFSLHVIDVGNNNLSGEIPQCFGN----- 515
+ + +LT L + GN L L N +L +D+ ++++ E C
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI--ETSDCCNLQLRNL 375
Query: 516 SALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPS-LINCRYLEVLDIGNN 574
S L+ ++ N + F + L L+L +L+ + S N L+VL++ ++
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435
Query: 575 HINDTFPYWLEILPELRVLILRSNRF-WGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTR 633
++ + + LP L+ L L+ N F G I T + +L IL LS L+
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS----- 490
Query: 634 YLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDL 693
ID L + +DL
Sbjct: 491 -------------------------------------------IDQHAFTSLKMMNHVDL 507
Query: 694 SSNRFQGGIPAIVGKLNSLKG--LNISHNNLTGGIPSSLANLTELESLDLSSNKL 746
S NR + + L+ LKG LN++ N+++ +PS L L++ +++L N L
Sbjct: 508 SHNRLTS---SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 34/168 (20%)
Query: 91 LDLSCSWLHGSISSNSSLFFLPRLQKLNLGSNDFNYSKISSGFXXXXXXXXXXXXXXNFT 150
L+LS S L ISS LP LQ LNL N F I T
Sbjct: 430 LNLSHSLL--DISSEQLFDGLPALQHLNLQGNHFPKGNIQK------------------T 469
Query: 151 GSIPPSLGNLTQLV--YLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGEL 208
S+ +LG L LV + DLS+ I + + FT+ +++++ N+LT SS+ L
Sbjct: 470 NSL-QTLGRLEILVLSFCDLSS---IDQ--HAFTSLKMMNHVDLSHNRLTS---SSIEAL 520
Query: 209 ANLATVYLYF--NSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVY 254
++L +YL N + +PS + L+ + ++ R N L + S++Y
Sbjct: 521 SHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC-SNIY 567
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 688 FTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLV 747
T++D+ N P + KL LK LN+ HN L+ + A T L L L SN +
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110
Query: 748 GQIPMQMASLKSLSVLNLSHNQLEGPVPRGTQ 779
K+L L+LSHN L GTQ
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQ 141
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 114/482 (23%), Positives = 186/482 (38%), Gaps = 97/482 (20%)
Query: 400 MTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQ-CLVNSTVKFLDLRMNNFQ 458
+T+ ++++N L ++F S + L++ N+ S P+ C +K L+L+ N
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 459 GIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLS------------ 506
+ +T+A NLT L L N ++ + +L +D+ +N LS
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 507 ---------------GEIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQ 551
E F NS+LK ++ N+ P F L L LN Q
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 552 LEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRA 611
L L+ L L++ N I R L L +++ T
Sbjct: 207 LGPSLTEKL-------CLELANTSI--------------RNLSLSNSQLSTTSNTTFLGL 245
Query: 612 PFSKLRILDLSHNQLTGV-------LPT-RYL----NN----FRAMIHGENNSVTVEVKY 655
++ L +LDLS+N L V LP Y NN F +HG N V+Y
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN-----VRY 300
Query: 656 LSLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGL 715
L+L S + + ++ ID + L +++ N G + L +LK L
Sbjct: 301 LNLKRS--FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358
Query: 716 NISHN-----NLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHN-- 768
++S++ LT SLA+ + L L+L+ NK+ + L L VL+L N
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417
Query: 769 --QLEGPVPRGTQFNTFQ------------NDSYAGNPGLCGFPLSESC--DMDEAPDPS 812
+L G RG + N F+ +S+A P L L ++D +P P
Sbjct: 418 GQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476
Query: 813 SP 814
P
Sbjct: 477 QP 478
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 470 NLTFLKLNGNKLEGPLPPSLINCFS-LHVIDVGNNNLSGEIPQ-CFGNSALKVFDMRMNR 527
N+T L L N+L LP + +S L +DVG N +S P+ C LKV +++ N
Sbjct: 26 NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 528 FNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDT 579
+ + FA +L L+L N ++ + + + L LD+ +N ++ T
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 185 SKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQ 244
+ ++ LN NQL ++ + L ++ + FN++ P L LK ++ +HN+
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 245 LSGSVPSSVYELVNLTRLDLSSNKL 269
LS + NLT L L SN +
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSI 109
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 688 FTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLV 747
T++D+ N P + KL LK LN+ HN L+ + A T L L L SN +
Sbjct: 56 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 115
Query: 748 GQIPMQMASLKSLSVLNLSHNQLEGPVPRGTQ 779
K+L L+LSHN L GTQ
Sbjct: 116 KIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQ 146
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 114/482 (23%), Positives = 186/482 (38%), Gaps = 97/482 (20%)
Query: 400 MTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQ-CLVNSTVKFLDLRMNNFQ 458
+T+ ++++N L ++F S + L++ N+ S P+ C +K L+L+ N
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 459 GIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLS------------ 506
+ +T+A NLT L L N ++ + +L +D+ +N LS
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 151
Query: 507 ---------------GEIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQ 551
E F NS+LK ++ N+ P F L L LN Q
Sbjct: 152 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 211
Query: 552 LEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRA 611
L L+ L L++ N I R L L +++ T
Sbjct: 212 LGPSLTEKL-------CLELANTSI--------------RNLSLSNSQLSTTSNTTFLGL 250
Query: 612 PFSKLRILDLSHNQLTGV-------LPT-RYL----NN----FRAMIHGENNSVTVEVKY 655
++ L +LDLS+N L V LP Y NN F +HG N V+Y
Sbjct: 251 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN-----VRY 305
Query: 656 LSLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGL 715
L+L S + + ++ ID + L +++ N G + L +LK L
Sbjct: 306 LNLKRS--FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 363
Query: 716 NISHN-----NLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHN-- 768
++S++ LT SLA+ + L L+L+ NK+ + L L VL+L N
Sbjct: 364 SLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 422
Query: 769 --QLEGPVPRGTQFNTFQ------------NDSYAGNPGLCGFPLSESC--DMDEAPDPS 812
+L G RG + N F+ +S+A P L L ++D +P P
Sbjct: 423 GQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 481
Query: 813 SP 814
P
Sbjct: 482 QP 483
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 470 NLTFLKLNGNKLEGPLPPSLINCFS-LHVIDVGNNNLSGEIPQ-CFGNSALKVFDMRMNR 527
N+T L L N+L LP + +S L +DVG N +S P+ C LKV +++ N
Sbjct: 31 NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 528 FNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDT 579
+ + FA +L L+L N ++ + + + L LD+ +N ++ T
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 185 SKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQ 244
+ ++ LN NQL ++ + L ++ + FN++ P L LK ++ +HN+
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 245 LSGSVPSSVYELVNLTRLDLSSNKL 269
LS + NLT L L SN +
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSI 114
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 688 FTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLV 747
T++D+ N P + KL LK LN+ HN L+ + A T L L L SN +
Sbjct: 61 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 120
Query: 748 GQIPMQMASLKSLSVLNLSHNQLEGPVPRGTQ 779
K+L L+LSHN L GTQ
Sbjct: 121 KIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQ 151
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 114/482 (23%), Positives = 186/482 (38%), Gaps = 97/482 (20%)
Query: 400 MTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQ-CLVNSTVKFLDLRMNNFQ 458
+T+ ++++N L ++F S + L++ N+ S P+ C +K L+L+ N
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 459 GIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLS------------ 506
+ +T+A NLT L L N ++ + +L +D+ +N LS
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 156
Query: 507 ---------------GEIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQ 551
E F NS+LK ++ N+ P F L L LN Q
Sbjct: 157 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 216
Query: 552 LEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRA 611
L L+ L L++ N I R L L +++ T
Sbjct: 217 LGPSLTEKL-------CLELANTSI--------------RNLSLSNSQLSTTSNTTFLGL 255
Query: 612 PFSKLRILDLSHNQLTGV-------LPT-RYL----NN----FRAMIHGENNSVTVEVKY 655
++ L +LDLS+N L V LP Y NN F +HG N V+Y
Sbjct: 256 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN-----VRY 310
Query: 656 LSLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGL 715
L+L S + + ++ ID + L +++ N G + L +LK L
Sbjct: 311 LNLKRS--FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 368
Query: 716 NISHN-----NLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHN-- 768
++S++ LT SLA+ + L L+L+ NK+ + L L VL+L N
Sbjct: 369 SLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 427
Query: 769 --QLEGPVPRGTQFNTFQ------------NDSYAGNPGLCGFPLSESC--DMDEAPDPS 812
+L G RG + N F+ +S+A P L L ++D +P P
Sbjct: 428 GQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 486
Query: 813 SP 814
P
Sbjct: 487 QP 488
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 470 NLTFLKLNGNKLEGPLPPSLINCFS-LHVIDVGNNNLSGEIPQ-CFGNSALKVFDMRMNR 527
N+T L L N+L LP + +S L +DVG N +S P+ C LKV +++ N
Sbjct: 36 NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 528 FNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDT 579
+ + FA +L L+L N ++ + + + L LD+ +N ++ T
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 185 SKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQ 244
+ ++ LN NQL ++ + L ++ + FN++ P L LK ++ +HN+
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 245 LSGSVPSSVYELVNLTRLDLSSNKL 269
LS + NLT L L SN +
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSI 119
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 665 ACYESII-LTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLT 723
C ++++ + KG+ + + + T + L N+F +P + L +++S+N ++
Sbjct: 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS 67
Query: 724 GGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRGT--QFN 781
S +N+T+L +L LS N+L P LKSL +L+L N + VP G +
Sbjct: 68 TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLS 126
Query: 782 TFQNDSYAGNPGLC 795
+ + NP C
Sbjct: 127 ALSHLAIGANPLYC 140
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 460 IIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGN-SAL 518
++P+ +D +T L L+GN+ +P L N L +ID+ NN +S Q F N + L
Sbjct: 24 VLPKGIPRD--VTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 519 KVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQL 552
+ NR P+ F LR L+L+GN +
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 541 DLRSLNLNGNQLEGPLSP-SLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNR 599
D+ L L+GNQ L P L N ++L ++D+ NN I+ + +L LIL NR
Sbjct: 32 DVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 600 FWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIH 643
+T LR+L L N ++ V+P N+ A+ H
Sbjct: 90 LR--CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSH 130
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 153 IPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLA 212
+P L N L +DLSNN F+N ++L L N+L P + L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 213 TVYLYFNSLKGTIPSRIFS-LTSLKQVDFRHNQL 245
+ L+ N + +P F+ L++L + N L
Sbjct: 106 LLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 161/396 (40%), Gaps = 51/396 (12%)
Query: 420 NLSSIQYLEMSNNSFSG-QIPQCLVNSTVKFLDLRMNNFQGIIPQ---TYAKDCNLTFLK 475
NL +++ L + +N S +P+ +K LD + N I + + + NL+ L
Sbjct: 126 NLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLS-LN 184
Query: 476 LNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQ- 534
NGN ++G P + I+ + G+ NL I + NS L+ + + F + Q
Sbjct: 185 FNGNDIKGIEPGAFISKIFQSLKFGGSLNLFI-IFKGLQNSTLQ--SLWLGTFEDTDDQY 241
Query: 535 ----MFAKSCDL--RSLNLNGNQLEGPLSPSLINC-RYLEVLDIGNNHINDTFPYWLEIL 587
F CD+ S+NL ++ LS S C ++ LD+ H+N P +E +
Sbjct: 242 LTSATFEGLCDMSVESINLQKHRF-SDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGM 299
Query: 588 PELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENN 647
L+ L+L +N F A F LR L + N L TR L + + +
Sbjct: 300 NSLKKLVLNANSFDQLC--QINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLS 357
Query: 648 SVTVE-----------VKYLSLLNSSY-----------YACYESIILTMKGIDLQLE--- 682
+E +++L LN SY C + +L + L ++
Sbjct: 358 HSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPH 417
Query: 683 ---RVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSS---LANLTEL 736
+ L + ++LS ++ L L+ LN+ N+ G S L + L
Sbjct: 418 SPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSL 477
Query: 737 ESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEG 772
E L LSS L+ L++++ L+LSHN L G
Sbjct: 478 EILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 129/337 (38%), Gaps = 49/337 (14%)
Query: 159 NLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYF 218
NL + + DLS+++F FT ++ L+ L G +PS + + +L + L
Sbjct: 259 NLQKHRFSDLSSSTF-----RCFT---RVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNA 309
Query: 219 NSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKLSGTVELYD 277
NS S SL+ + + N + + E L NL +LDLS + + +
Sbjct: 310 NSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEAS----- 364
Query: 278 FAXXXXXXXXXXXXXXXXXXXXXXXXXXFLNLSR---LGLSACKISKFPVILKTQLQLEW 334
+LNLS LGL + P QLE
Sbjct: 365 --------------DCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECP-------QLEL 403
Query: 335 LDLSENQIHGRVPGWMWDVGIHTLSYLDLS--------QNFLRSIKRLPWKNLK-NXXXX 385
LD++ +H + P + +H L L+LS Q+ L ++ L NL+ N
Sbjct: 404 LDVAFTHLHVKAPHSPFQ-NLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD 462
Query: 386 XXXXXXXXXXXXXXMTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVNS 445
+ I +S+ L +F L ++ +L++S+NS +G L +
Sbjct: 463 GSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHL 522
Query: 446 TVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLE 482
+L++ NN + I P + + L+ N L+
Sbjct: 523 KGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLD 559
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 125/307 (40%), Gaps = 44/307 (14%)
Query: 469 CNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRF 528
NL +L LNGN++ P S N L + +G N ++ +I + L+ ++ +N
Sbjct: 66 TNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKIT-DISALQNLTNLR--ELYLNED 120
Query: 529 NGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILP 588
N S A SLNL N LSP L N L L + + + D P + L
Sbjct: 121 NISDISPLANLTKXYSLNLGANHNLSDLSP-LSNXTGLNYLTVTESKVKDVTP--IANLT 177
Query: 589 ELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNS 648
+L L L N+ I + A + L NQ+T + P ++ G NN
Sbjct: 178 DLYSLSLNYNQ----IEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIG-NNK 232
Query: 649 VTVEVKYLSLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGK 708
+T DL L+ T +++ +N+ I A V
Sbjct: 233 IT---------------------------DLSPLANLSQLTWLEIGTNQI-SDINA-VKD 263
Query: 709 LNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHN 768
L LK LN+ N ++ S L NL++L SL L++N+L + + L +L+ L LS N
Sbjct: 264 LTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN 321
Query: 769 QLEGPVP 775
+ P
Sbjct: 322 HITDIRP 328
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 185 SKLSYLNFGGNQLTGQIPSSVGELANLATVY-LYFNSLKGTIPSRIFSLTSLKQVDFRHN 243
+ L YLN GNQ+T P L+NL + LY + K T S + +LT+L+++ +
Sbjct: 66 TNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED 120
Query: 244 QLSGSVPSSVYELVNLTR 261
+S P L NLT+
Sbjct: 121 NISDISP-----LANLTK 133
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 704 AIVGKLNSLKGLNISHNNL--TGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLS 761
A+ L+GL++SHN+L G PS ++L SL+LS L Q+P + + LS
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWP-SQLNSLNLSFTGL-KQVPKGLPA--KLS 277
Query: 762 VLNLSHNQLEGPVPRGTQFNTFQNDSYAGNP 792
VL+LS+N+L+ P + N S GNP
Sbjct: 278 VLDLSYNRLDR-NPSPDELPQVGNLSLKGNP 307
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 165 YLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGT 224
YL+L N+ + F + L L G N + + LA+L T+ L+ N L
Sbjct: 79 YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-V 137
Query: 225 IPSRIFS-LTSLKQVDFRHNQLSGSVPSSVYELV-NLTRLDLSSNK 268
IPS F L+ L+++ R+N + S+PS + V +L RLDL K
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 15/232 (6%)
Query: 543 RSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWG 602
R LNL N ++ + + + +LEVL +G N I L L L L N W
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN--WL 135
Query: 603 PIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIH---GENNSVTV--EVKYLS 657
+ + SKLR L L +N + + P+ N +++ GE + E +
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 658 LLNSSYYACYESIILTMKGI-DLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLN 716
L N Y + L M I D+ L +++S N F P L+SLK L
Sbjct: 195 LFNLKY------LNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248
Query: 717 ISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHN 768
+ ++ ++ ++ L L L+L+ N L L+ L L+L HN
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 214 VYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
+YLY N + P LT L ++D +NQL+ +P+ V++ L LT+L L+ N+L
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL 90
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 689 TTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVG 748
TT+D S +P G + + L + N +T P LT+L LDL +N+L
Sbjct: 12 TTVDCSGKSL-ASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 749 QIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
L L+ L+L+ NQL+ +PRG
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKS-IPRG 96
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 154 PPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLAT 213
P LTQL LDL NN +F ++L+ L+ NQL + L +L
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106
Query: 214 VYLYFN 219
++L N
Sbjct: 107 IWLLNN 112
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 214 VYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
+YLY N + P LT L ++D +NQL+ +P+ V++ L LT+L L+ N+L
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL 98
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 689 TTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVG 748
TT+D S +P G + + L + N +T P LT+L LDL +N+L
Sbjct: 20 TTVDCSGKSL-ASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 749 QIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
L L+ L+L+ NQL+ +PRG
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKS-IPRG 104
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 154 PPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLAT 213
P LTQL LDL NN +F ++L+ L+ NQL + L +L
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 114
Query: 214 VYLYFN 219
++L N
Sbjct: 115 IWLLNN 120
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 686 TIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNK 745
T T +DLS + + + L+ L+ LN+SHNNL S L L +LD S N+
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532
Query: 746 LVGQIPMQMASLKSLSVLNLSHNQL 770
+ + KSL+ NL++N +
Sbjct: 533 IETSKGILQHFPKSLAFFNLTNNSV 557
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 706 VGKLNSLKGLNISHNNL-TGGIPSSLANLTELESLDLSSN 744
+G+L +LK LN++HN + + +P+ +NLT L +DLS N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVY 215
S N ++L +LDLS + LS L GN + P S L +L +
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 216 LYFNSLKGTIPSRIFSLTSLKQVDFRHNQL-SGSVPSSVYELVNLTRLDLSSN 267
L I L +LK+++ HN + S +P+ L NL +DLS N
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 17/171 (9%)
Query: 470 NLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFN 529
NL L+L N++ P L N + +++ N L + G ++K D+ +
Sbjct: 70 NLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQIT 126
Query: 530 GSIPQMFAKSCDLRSLNLNGNQLEGPLSP--SLINCRYLEVLDIGNNHINDTFPYWLEIL 587
P A +L+ L L+ NQ+ +SP L N +YL IGNN +ND P L L
Sbjct: 127 DVTP--LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLS---IGNNQVNDLTP--LANL 178
Query: 588 PELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNF 638
+L L N+ I + A L + L NQ++ V P L+N
Sbjct: 179 SKLTTLRADDNK----ISDISPLASLPNLIEVHLKDNQISDVSPLANLSNL 225
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 569 LDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTG 628
L++ +N I D P L+ L ++ L L N P+ N A ++ LDL+ Q+T
Sbjct: 74 LELKDNQITDLTP--LKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITD 127
Query: 629 VLPTRYLNNFRAM 641
V P L+N + +
Sbjct: 128 VTPLAGLSNLQVL 140
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 686 TIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNK 745
T T +DLS + + + L+ L+ LN+SHNNL S L L +LD S N+
Sbjct: 468 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 527
Query: 746 LVGQIPMQMASLKSLSVLNLSHNQL 770
+ + KSL+ NL++N +
Sbjct: 528 IETSKGILQHFPKSLAFFNLTNNSV 552
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 706 VGKLNSLKGLNISHNNL-TGGIPSSLANLTELESLDLSSN 744
+G+L +LK LN++HN + + +P+ +NLT L +DLS N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 156 SLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVY 215
S N ++L +LDLS + LS L GN + P S L +L +
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 216 LYFNSLKGTIPSRIFSLTSLKQVDFRHNQL-SGSVPSSVYELVNLTRLDLSSN 267
L I L +LK+++ HN + S +P+ L NL +DLS N
Sbjct: 106 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 214 VYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
+YLY N + P LT L ++D +NQL+ +P+ V++ L LT+L L+ N+L
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL 90
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 689 TTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVG 748
TT+D S +P G + + L + N +T P LT+L LDL +N+L
Sbjct: 12 TTVDCSGKSL-ASVP--TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 749 QIPMQMASLKSLSVLNLSHNQLEGPVPRG 777
L L+ L+L+ NQL+ +PRG
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKS-IPRG 96
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 154 PPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLAT 213
P LTQL LDL NN +F ++L+ L+ NQL + L +L
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTH 106
Query: 214 VYLYFN 219
++L N
Sbjct: 107 IWLLNN 112
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 691 IDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQI 750
I L+SNR + + L SLK L + N +T S L+ + L L N++
Sbjct: 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145
Query: 751 PMQMASLKSLSVLNLSHN 768
P +L SLS LNL N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 535 MFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLI 594
+F K LR +N + N++ + + + + +N + + + L L+ L+
Sbjct: 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111
Query: 595 LRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRY 634
LRSNR +GN + S +R+L L NQ+T V P +
Sbjct: 112 LRSNRITC-VGN-DSFIGLSSVRLLSLYDNQITTVAPGAF 149
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 158 GNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLY 217
G L L LDLS+N + +P + L+ L+ N+LT ++ L L +YL
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 218 FNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKL 269
N LK P + L+++ +N L+ + L NL L L N L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 679 LQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLT----GGI-------- 726
LQ++ L + T+DLS N+ Q +P + L +L L++S N LT G +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 727 ------------PSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPV 774
P L +LE L L++N L + L++L L L N L +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYT-I 187
Query: 775 PRGTQFNTFQNDSY-AGNPGLC 795
P+G + ++ GNP LC
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLC 209
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 28/225 (12%)
Query: 568 VLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLT 627
+LD+ NN I++ + L L L+L +N+ + K +P KL+ L +S N L
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK--IHEKAFSPLRKLQKLYISKNHLV 115
Query: 628 GVLPT-------------RYLNNFRAMIHGENNSVTVEVKYLSLLNSSYY-ACYESIIL- 672
+ P R + + G N +E+ L NS + ++ + L
Sbjct: 116 EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175
Query: 673 -------TMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGG 725
+ GI L L + L N+ Q + + + L L + HN +
Sbjct: 176 YLRISEAKLTGIPKDLPETLN---ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Query: 726 IPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQL 770
SL+ L L L L +NKL ++P + LK L V+ L N +
Sbjct: 233 ENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNI 276
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 186 KLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQL 245
KL+YL +LTG IP + E N ++L N ++ + + L ++ HNQ+
Sbjct: 173 KLNYLRISEAKLTG-IPKDLPETLN--ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 246 SGSVPSSVYELVNLTRLDLSSNKLS 270
S+ L L L L +NKLS
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLS 254
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 27/196 (13%)
Query: 405 ISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQT 464
+ NN ++ +F L +Q L +S N +IP L +S V+ L + N + +
Sbjct: 85 LVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVE-LRIHDNRIRKVPKGV 142
Query: 465 YAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMR 524
++ N+ +++ GN LE SG P F L +
Sbjct: 143 FSGLRNMNCIEMGGNPLEN----------------------SGFEPGAFDGLKLNYLRIS 180
Query: 525 MNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWL 584
+ G IP+ ++ L L+L+ N+++ L+ L L +G+N I L
Sbjct: 181 EAKLTG-IPKDLPET--LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237
Query: 585 EILPELRVLILRSNRF 600
LP LR L L +N+
Sbjct: 238 SFLPTLRELHLDNNKL 253
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 127/327 (38%), Gaps = 57/327 (17%)
Query: 499 DVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSP 558
D+ + ++S + + +++ +++ +RF+ F L+ L+L L+G L
Sbjct: 234 DIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPS 292
Query: 559 SLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRI 618
+ L+ L + NH + P L L +R N +G L+
Sbjct: 293 GMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLG-VGCLEKLGNLQT 351
Query: 619 LDLSHNQLTGV----LPTRYLNNFRAMIHGENNSVTV------EVKYLSLLNSSYYACY- 667
LDLSHN + L + L++ + + N + + E L LL+ ++ +
Sbjct: 352 LDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHI 411
Query: 668 -------------ESIILTMKGIDLQLERVLT---IFTTIDLSSNRFQGG------IPAI 705
+ + LT +D + +L + ++L N FQ G +
Sbjct: 412 NAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQT 471
Query: 706 VGKLNSL---------------------KGLNISHNNLTGGIPSSLANLTELESLDLSSN 744
VG L L +++SHN+LT SL++L + L+L++N
Sbjct: 472 VGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAAN 530
Query: 745 KLVGQIPMQMASLKSLSVLNLSHNQLE 771
+ P + L S +NLSHN L+
Sbjct: 531 SINIISPRLLPILSQQSTINLSHNPLD 557
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 110/433 (25%), Positives = 172/433 (39%), Gaps = 102/433 (23%)
Query: 413 EIPSSFCNLSSIQYLEMSNN---SFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDC 469
EIP + N + ++LE S N + + L+N T FLDL I T+
Sbjct: 23 EIPDTLPN--TTEFLEFSFNFLPTIHNRTFSRLMNLT--FLDLTRCQINWIHEDTFQSHH 78
Query: 470 NLTFLKLNGNKL----EGPL--PPSLINCF------------------SLHVIDVGNNNL 505
L+ L L GN L E L P SL + F +L + +G+N++
Sbjct: 79 QLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHI 138
Query: 506 SG-EIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSCDLRSL--------NLNGNQLEGPL 556
S + P+ F LKV D + N + + D+RSL N NGN ++G +
Sbjct: 139 SSIKFPKDFPARNLKVLDFQNNAIH------YISREDMRSLEQAINLSLNFNGNNVKG-I 191
Query: 557 SPSLINCRYLEVLDIGNN--------------------------HINDTFPYWLEILPEL 590
+ + L+ G D L+ L E+
Sbjct: 192 ELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEM 251
Query: 591 RV--LILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPT--RYLNNFRAMIHGEN 646
V L L+ +RF I +T T F++L+ LDL+ L G LP+ + LN + ++
Sbjct: 252 SVESLNLQEHRF-SDISST-TFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLV---- 304
Query: 647 NSVTVEVKYLSLLNSSYYACYESII-LTMKGIDLQLE------RVLTIFTTIDLSSNRFQ 699
+ V + L A + S+ L ++G +L L T+DLS N +
Sbjct: 305 ----LSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIE 360
Query: 700 GG--IPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKL---VGQIPMQM 754
+ L+ L+ LN+SHN G + +LE LDL+ +L Q P Q
Sbjct: 361 ASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQ- 419
Query: 755 ASLKSLSVLNLSH 767
+L L VLNL++
Sbjct: 420 -NLHFLQVLNLTY 431
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 158 GNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLY 217
G L L LDLS+N + +P + L+ L+ N+LT ++ L L +YL
Sbjct: 75 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 218 FNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKL 269
N LK P + L+++ +N L+ + L NL L L N L
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 679 LQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLT----GGI-------- 726
LQ++ L + T+DLS N+ Q +P + L +L L++S N LT G +
Sbjct: 71 LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 129
Query: 727 ------------PSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPV 774
P L +LE L L++N L + L++L L L N L +
Sbjct: 130 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I 188
Query: 775 PRGTQFNTFQNDSY-AGNPGLC 795
P+G + ++ GNP LC
Sbjct: 189 PKGFFGSHLLPFAFLHGNPWLC 210
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 158 GNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLY 217
G L L LDLS+N + +P + L+ L+ N+LT ++ L L +YL
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 218 FNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKL 269
N LK P + L+++ +N L+ + L NL L L N L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 679 LQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLT----GGI-------- 726
LQ++ L + T+DLS N+ Q +P + L +L L++S N LT G +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 727 ------------PSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPV 774
P L +LE L L++N L + L++L L L N L +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I 187
Query: 775 PRGTQFNTFQNDSY-AGNPGLC 795
P+G + ++ GNP LC
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLC 209
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 158 GNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLY 217
G L L LDLS+N + +P + L+ L+ N+LT ++ L L +YL
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 218 FNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKL 269
N LK P + L+++ +N L+ + L NL L L N L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 679 LQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLT----GGI-------- 726
LQ++ L + T+DLS N+ Q +P + L +L L++S N LT G +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 727 ------------PSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPV 774
P L +LE L L++N L + L++L L L N L +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I 187
Query: 775 PRGTQFNTFQNDSY-AGNPGLC 795
P+G + ++ GNP LC
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLC 209
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 158 GNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLY 217
G L L LDLS+N + +P + L+ L+ N+LT ++ L L +YL
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 218 FNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKL 269
N LK P + L+++ +N L+ + L NL L L N L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 679 LQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLT----GGI-------- 726
LQ++ L + T+DLS N+ Q +P + L +L L++S N LT G +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 727 ------------PSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPV 774
P L +LE L L++N L + L++L L L N L +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I 187
Query: 775 PRGTQFNTFQNDSY-AGNPGLC 795
P+G + ++ GNP LC
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLC 209
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 158 GNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLY 217
G L L LDLS+N + +P + L+ L+ N+LT ++ L L +YL
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 218 FNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKL 269
N LK P + L+++ +N L+ + L NL L L N L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 679 LQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLT----GGI-------- 726
LQ++ L + T+DLS N+ Q +P + L +L L++S N LT G +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 727 ------------PSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPV 774
P L +LE L L++N L + L++L L L N L +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I 187
Query: 775 PRGTQFNTFQNDSY-AGNPGLC 795
P+G + ++ GNP LC
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLC 209
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 26/140 (18%)
Query: 400 MTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNN---------SFSG-------QIPQCLV 443
+TI + +N L G ++F L+ ++ L++S+N +F G + +C +
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 444 N----------STVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCF 493
+ +++L L+ NN Q + T+ NLT L L+GN++ +
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLH 176
Query: 494 SLHVIDVGNNNLSGEIPQCF 513
SL + + N+++ P F
Sbjct: 177 SLDRLLLHQNHVARVHPHAF 196
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 569 LDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTG 628
L++ +N I D P L+ L ++ L L N P+ N A ++ LDL+ Q+T
Sbjct: 68 LELKDNQITDLAP--LKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITD 121
Query: 629 VLPTRYLNNFRAM 641
V P L+N + +
Sbjct: 122 VTPLAGLSNLQVL 134
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 194 GNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSV 253
G LT +IP+++ E + + L N++K P L+++D +NQ+S P +
Sbjct: 20 GKGLT-EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 254 YELVNLTRLDLSSNKLS 270
L +L L L NK++
Sbjct: 77 QGLRSLNSLVLYGNKIT 93
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 194 GNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSV 253
G LT +IP+++ E + + L N++K P L+++D +NQ+S P +
Sbjct: 20 GKGLT-EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 254 YELVNLTRLDLSSNKLS 270
L +L L L NK++
Sbjct: 77 QGLRSLNSLVLYGNKIT 93
>pdb|4E9O|X Chain X, Vaccinia D8l Ectodomain Structure
pdb|4ETQ|X Chain X, Vaccinia Virus D8l Imv Envelope Protein In Complex With
Fab Of Murine Igg2a La5
pdb|4ETQ|C Chain C, Vaccinia Virus D8l Imv Envelope Protein In Complex With
Fab Of Murine Igg2a La5
Length = 269
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 508 EIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLE 567
E + N+ LK D+ +N S P + L +N G + G P+ L
Sbjct: 11 ETKKAISNARLKPLDIH---YNESKPTTIQNTGKLVRINFKGGYISGGFLPNEYVLSSLH 67
Query: 568 VL-----DIGNNHINDTFPYWLEI 586
+ D G+NH+ D + Y EI
Sbjct: 68 IYWGKEDDYGSNHLIDVYKYSGEI 91
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 160 LTQLVYLDLSNNSFIGEI-PNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYF 218
L L LDLS+N+ + + P F +L L+ L P LA L +YL
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 219 NSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKLS 270
N+L+ L +L + N++S SVP + L +L RL L N+++
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 189
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 160 LTQLVYLDLSNNSFIGEI-PNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYF 218
L L LDLS+N+ + + P F +L L+ L P LA L +YL
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 219 NSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKLS 270
N+L+ L +L + N++S SVP + L +L RL L N+++
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 152 SIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANL 211
S+P S+ NL L L + N+ P + + KL L+ G P G A L
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 212 ATVYLYFNSLKGTIPSRIFSLTSLKQVDFR 241
+ L S T+P I LT L+++D R
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 517 ALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHI 576
A+K D+ NR + +L++L L N + S + LE LD+ N++
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 577 NDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRIL 619
++ W + L L L L N + +G T + +KL+IL
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQIL 154
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 214 VYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYE-LVNLTRLDLSSNKL 269
++L N + P L +L+Q+ F N+L+ ++P+ V++ L LT+LDL+ N L
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHL 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,705,867
Number of Sequences: 62578
Number of extensions: 955266
Number of successful extensions: 3026
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1741
Number of HSP's gapped (non-prelim): 787
length of query: 882
length of database: 14,973,337
effective HSP length: 107
effective length of query: 775
effective length of database: 8,277,491
effective search space: 6415055525
effective search space used: 6415055525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)