Query 002771
Match_columns 882
No_of_seqs 871 out of 5312
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:47:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-72 2.4E-77 702.1 51.6 583 29-798 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1E-57 2.2E-62 567.9 43.6 514 112-796 69-586 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.3E-36 7.1E-41 315.5 7.4 389 140-596 55-447 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 9.8E-39 2.1E-43 320.6 -11.4 478 162-777 46-545 (565)
5 KOG0472 Leucine-rich repeat pr 100.0 3.3E-38 7.2E-43 316.8 -8.6 481 88-600 47-540 (565)
6 KOG4194 Membrane glycoprotein 100.0 9.4E-36 2E-40 312.0 7.0 386 114-547 54-446 (873)
7 KOG0618 Serine/threonine phosp 100.0 1.4E-36 3E-41 335.4 -3.1 504 143-768 4-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 4.1E-35 8.9E-40 323.8 -3.3 485 113-744 22-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.4E-33 5.2E-38 295.4 -2.7 366 109-529 4-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 5.2E-32 1.1E-36 285.4 -2.8 368 134-578 4-376 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.6E-21 3.4E-26 243.2 27.5 306 379-745 591-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.4E-21 3E-26 243.6 26.7 233 320-598 671-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 2E-24 4.3E-29 218.0 -0.7 131 163-294 69-200 (498)
14 KOG4237 Extracellular matrix p 99.9 5.8E-24 1.2E-28 214.6 -4.5 102 534-637 268-369 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 7.4E-21 1.6E-25 219.3 19.1 165 493-731 302-466 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 3.7E-20 7.9E-25 213.6 17.1 264 137-465 201-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.2E-18 2.7E-23 202.7 17.6 139 137-294 178-316 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.1E-18 2.3E-23 203.2 10.8 204 357-577 221-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 3.3E-19 7.1E-24 193.6 3.8 84 686-769 221-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 4.2E-18 9.1E-23 185.0 4.4 264 449-773 2-293 (319)
21 KOG0617 Ras suppressor protein 99.7 3E-18 6.5E-23 153.7 -4.0 167 107-281 28-195 (264)
22 PLN03150 hypothetical protein; 99.6 2.8E-15 6E-20 174.6 12.7 118 687-804 419-538 (623)
23 KOG0617 Ras suppressor protein 99.6 1.8E-17 3.9E-22 148.8 -4.4 157 133-295 29-186 (264)
24 PLN03150 hypothetical protein; 99.5 4.4E-14 9.4E-19 164.6 14.2 151 26-195 367-525 (623)
25 KOG0532 Leucine-rich repeat (L 99.1 3.1E-12 6.6E-17 136.3 -3.7 173 111-294 74-246 (722)
26 KOG1259 Nischarin, modulator o 99.1 3.4E-11 7.4E-16 118.3 2.7 87 685-774 328-415 (490)
27 KOG0532 Leucine-rich repeat (L 99.1 3.8E-12 8.2E-17 135.6 -4.6 155 107-270 93-247 (722)
28 KOG1909 Ran GTPase-activating 99.1 1.9E-11 4.1E-16 123.4 -0.4 62 685-746 240-310 (382)
29 KOG3207 Beta-tubulin folding c 99.1 2.2E-11 4.8E-16 126.1 -0.3 211 134-345 118-341 (505)
30 COG4886 Leucine-rich repeat (L 99.0 2.5E-10 5.5E-15 127.5 7.3 174 111-294 115-289 (394)
31 COG4886 Leucine-rich repeat (L 99.0 4.8E-10 1E-14 125.4 8.4 197 141-347 97-294 (394)
32 KOG3207 Beta-tubulin folding c 99.0 5.6E-11 1.2E-15 123.2 -0.1 209 158-370 118-340 (505)
33 KOG1909 Ran GTPase-activating 99.0 2.7E-11 5.8E-16 122.3 -3.4 239 111-368 29-310 (382)
34 KOG4658 Apoptotic ATPase [Sign 99.0 8.2E-10 1.8E-14 131.5 7.5 253 87-349 524-789 (889)
35 PF14580 LRR_9: Leucine-rich r 98.9 8.3E-10 1.8E-14 105.2 4.8 83 209-294 42-125 (175)
36 KOG1259 Nischarin, modulator o 98.9 3.8E-10 8.2E-15 111.1 1.6 136 181-323 280-415 (490)
37 PF14580 LRR_9: Leucine-rich r 98.9 1.4E-09 3.1E-14 103.6 4.9 126 205-336 15-146 (175)
38 KOG0531 Protein phosphatase 1, 98.8 4.3E-10 9.3E-15 125.8 -0.8 244 468-775 71-322 (414)
39 KOG0531 Protein phosphatase 1, 98.8 6.6E-10 1.4E-14 124.3 0.5 217 136-369 71-290 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.8 4.2E-09 9E-14 125.6 5.6 130 110-243 521-652 (889)
41 PF13855 LRR_8: Leucine rich r 98.8 3.3E-09 7.1E-14 83.0 3.2 60 711-770 2-61 (61)
42 PF13855 LRR_8: Leucine rich r 98.8 4.6E-09 9.9E-14 82.2 2.8 61 686-746 1-61 (61)
43 PF08263 LRRNT_2: Leucine rich 98.6 4.7E-08 1E-12 69.7 4.5 41 29-82 1-43 (43)
44 KOG1859 Leucine-rich repeat pr 98.4 1.4E-08 3.1E-13 111.5 -5.8 127 162-294 165-291 (1096)
45 KOG1859 Leucine-rich repeat pr 98.3 7.3E-09 1.6E-13 113.8 -8.7 128 186-320 165-292 (1096)
46 KOG4579 Leucine-rich repeat (L 98.3 3.2E-08 7E-13 86.6 -3.5 86 688-776 55-140 (177)
47 KOG2982 Uncharacterized conser 98.3 1.3E-07 2.8E-12 93.6 -0.7 85 135-219 69-156 (418)
48 KOG2120 SCF ubiquitin ligase, 98.2 5.5E-08 1.2E-12 96.2 -3.9 104 423-526 186-296 (419)
49 KOG2120 SCF ubiquitin ligase, 98.2 4.7E-08 1E-12 96.7 -4.9 176 209-386 185-372 (419)
50 COG5238 RNA1 Ran GTPase-activa 98.1 9.1E-07 2E-11 86.6 0.1 212 418-639 26-267 (388)
51 COG5238 RNA1 Ran GTPase-activa 98.0 2.5E-06 5.5E-11 83.6 1.2 187 111-298 29-258 (388)
52 KOG2982 Uncharacterized conser 97.8 5.7E-06 1.2E-10 82.3 1.6 210 158-391 42-263 (418)
53 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.2E-10 56.3 3.0 36 711-747 2-37 (44)
54 KOG4579 Leucine-rich repeat (L 97.7 3.6E-06 7.9E-11 74.0 -1.4 84 688-773 29-115 (177)
55 PF12799 LRR_4: Leucine Rich r 97.7 2.9E-05 6.2E-10 55.4 3.3 38 686-724 1-38 (44)
56 PRK15386 type III secretion pr 97.7 0.00013 2.9E-09 78.4 8.4 77 536-626 48-124 (426)
57 KOG3665 ZYG-1-like serine/thre 97.6 1.8E-05 3.9E-10 92.4 1.5 149 137-287 122-280 (699)
58 PRK15386 type III secretion pr 97.6 0.00025 5.5E-09 76.3 8.9 16 279-294 49-64 (426)
59 KOG1644 U2-associated snRNP A' 97.4 0.00026 5.7E-09 67.0 5.5 84 210-295 43-126 (233)
60 KOG1644 U2-associated snRNP A' 97.4 0.00023 4.9E-09 67.4 4.8 104 233-339 42-149 (233)
61 KOG3665 ZYG-1-like serine/thre 97.2 8.9E-05 1.9E-09 86.8 0.5 136 112-249 122-266 (699)
62 PF13306 LRR_5: Leucine rich r 97.1 0.0014 3E-08 60.2 7.3 58 133-192 8-65 (129)
63 PF13306 LRR_5: Leucine rich r 97.1 0.0013 2.7E-08 60.4 6.6 121 464-590 7-128 (129)
64 KOG4341 F-box protein containi 97.1 1.9E-05 4.2E-10 82.5 -6.1 132 468-599 293-437 (483)
65 KOG4341 F-box protein containi 97.0 5.2E-05 1.1E-09 79.3 -3.2 230 256-504 189-437 (483)
66 KOG2739 Leucine-rich acidic nu 96.6 0.0014 3E-08 65.1 2.9 62 207-270 41-104 (260)
67 KOG2123 Uncharacterized conser 96.4 0.00018 3.8E-09 71.3 -4.8 88 541-633 20-107 (388)
68 KOG2739 Leucine-rich acidic nu 96.2 0.0035 7.6E-08 62.3 3.0 87 539-628 42-130 (260)
69 KOG1947 Leucine rich repeat pr 95.8 0.0017 3.7E-08 74.8 -1.4 17 277-293 357-373 (482)
70 KOG2123 Uncharacterized conser 95.5 0.0012 2.7E-08 65.5 -3.3 81 306-391 18-102 (388)
71 PF00560 LRR_1: Leucine Rich R 95.4 0.0063 1.4E-07 36.0 0.7 12 712-723 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0068 1.5E-07 35.9 0.7 19 736-755 2-20 (22)
73 KOG1947 Leucine rich repeat pr 93.5 0.014 3E-07 67.3 -1.6 35 397-431 187-223 (482)
74 KOG4308 LRR-containing protein 92.4 0.0015 3.2E-08 73.4 -11.1 36 400-435 89-128 (478)
75 KOG4308 LRR-containing protein 91.8 0.0013 2.9E-08 73.7 -12.3 60 542-601 235-303 (478)
76 KOG0473 Leucine-rich repeat pr 89.5 0.0083 1.8E-07 58.2 -7.3 83 135-220 40-122 (326)
77 PF13504 LRR_7: Leucine rich r 89.4 0.23 4.9E-06 27.2 1.3 11 712-722 3-13 (17)
78 KOG0473 Leucine-rich repeat pr 88.6 0.019 4.2E-07 55.8 -5.6 83 686-771 42-124 (326)
79 smart00369 LRR_TYP Leucine-ric 86.8 0.55 1.2E-05 28.9 2.0 13 711-723 3-15 (26)
80 smart00370 LRR Leucine-rich re 86.8 0.55 1.2E-05 28.9 2.0 13 711-723 3-15 (26)
81 smart00370 LRR Leucine-rich re 86.3 0.56 1.2E-05 28.9 1.9 17 733-749 1-17 (26)
82 smart00369 LRR_TYP Leucine-ric 86.3 0.56 1.2E-05 28.9 1.9 17 733-749 1-17 (26)
83 PF13516 LRR_6: Leucine Rich r 84.1 0.27 5.8E-06 29.7 -0.3 12 712-723 4-15 (24)
84 KOG3864 Uncharacterized conser 82.3 0.39 8.4E-06 46.2 -0.2 82 516-597 101-185 (221)
85 KOG3864 Uncharacterized conser 80.4 0.29 6.3E-06 47.1 -1.7 35 445-479 101-135 (221)
86 KOG4242 Predicted myosin-I-bin 79.7 7.9 0.00017 42.4 8.3 58 688-745 415-479 (553)
87 KOG4242 Predicted myosin-I-bin 72.2 11 0.00024 41.4 7.0 61 566-626 415-480 (553)
88 smart00365 LRR_SD22 Leucine-ri 70.2 3.6 7.9E-05 25.4 1.8 15 733-747 1-15 (26)
89 smart00364 LRR_BAC Leucine-ric 60.0 6.1 0.00013 24.4 1.4 12 712-723 4-15 (26)
90 smart00368 LRR_RI Leucine rich 59.5 7.2 0.00016 24.5 1.7 14 734-747 2-15 (28)
91 KOG3763 mRNA export factor TAP 55.8 7.2 0.00016 43.6 2.1 36 355-390 243-283 (585)
92 PF15179 Myc_target_1: Myc tar 50.1 11 0.00023 35.5 1.9 24 829-852 18-41 (197)
93 KOG3763 mRNA export factor TAP 45.1 10 0.00022 42.5 1.2 45 326-370 240-284 (585)
94 TIGR00864 PCC polycystin catio 31.7 27 0.00058 47.3 2.1 33 716-748 1-33 (2740)
95 PF01102 Glycophorin_A: Glycop 31.3 44 0.00096 29.8 2.7 11 835-845 68-78 (122)
96 PF01102 Glycophorin_A: Glycop 29.7 28 0.0006 31.1 1.2 20 833-852 62-81 (122)
97 PF13260 DUF4051: Protein of u 24.7 34 0.00073 24.2 0.7 15 854-870 20-34 (54)
98 TIGR00864 PCC polycystin catio 23.8 46 0.001 45.2 2.1 33 692-724 1-33 (2740)
99 smart00367 LRR_CC Leucine-rich 23.5 56 0.0012 19.9 1.4 11 161-171 2-12 (26)
100 PF01034 Syndecan: Syndecan do 21.9 26 0.00057 26.9 -0.3 17 834-850 12-28 (64)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-72 Score=702.10 Aligned_cols=583 Identities=36% Similarity=0.583 Sum_probs=467.5
Q ss_pred CHHHHHHHHHhhhhcCCCCCCCCcCCCccccCCCCCCCCCCCCCCCCCCceeecCCCCcEEEEECCCCCCccccCCCCcc
Q 002771 29 SQEQSSALLQFKQLFSFAKTSSSQCDGYQQSYPKMKYWKEDADCCSSWDGVTCDMVTGQVIGLDLSCSWLHGSISSNSSL 108 (882)
Q Consensus 29 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l 108 (882)
.++|++||++||+++.++.. .+.+|....+|| .|.||+|+. .++|+.|+|+++++.|.+++ .+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~-------------~~~~w~~~~~~c-~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~ 89 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLK-------------YLSNWNSSADVC-LWQGITCNN-SSRVVSIDLSGKNISGKISS--AI 89 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcc-------------cCCCCCCCCCCC-cCcceecCC-CCcEEEEEecCCCccccCCh--HH
Confidence 57899999999999965432 578998778899 999999986 47999999999999998876 78
Q ss_pred cCCCCCCEEECCCCCCCCCCCcccc-cCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCC
Q 002771 109 FFLPRLQKLNLGSNDFNYSKISSGF-SQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKL 187 (882)
Q Consensus 109 ~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 187 (882)
..+++|++|+|++|.+.+. +|..+ ..+++|++|+|++|.+++.+|. +.+++|++|+|++|.+.+.+|..++++++|
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred hCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 8899999999999988765 66554 4888999999999988887775 467888888888888888888888888888
Q ss_pred CEEEccCCcCCCCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCC
Q 002771 188 SYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSN 267 (882)
Q Consensus 188 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 267 (882)
++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 88888888888888888888888888888888888788888888888888888888888777777777777777777777
Q ss_pred cccccccchhhcCCCCCCceeccccccCCCccccccccccccCccccccccCCCCChhhhcCCCccEEEccccccccCCC
Q 002771 268 KLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVP 347 (882)
Q Consensus 268 ~l~~~i~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~i~~~~~ 347 (882)
.+++.+|. .+.++++|++|++++|.+ .+ .+|..+..+++|++|++++
T Consensus 247 ~l~~~~p~-~l~~l~~L~~L~L~~n~l--~~----------------------~~p~~l~~l~~L~~L~Ls~-------- 293 (968)
T PLN00113 247 NLTGPIPS-SLGNLKNLQYLFLYQNKL--SG----------------------PIPPSIFSLQKLISLDLSD-------- 293 (968)
T ss_pred eeccccCh-hHhCCCCCCEEECcCCee--ec----------------------cCchhHhhccCcCEEECcC--------
Confidence 77655543 444444444444444443 11 2222222222233333222
Q ss_pred chhhcccCCCccEEeCCCCccCCCCCCCCCCCceEEccCcccCCcCCCCCCCCcEEEcccccccccCCCcccCCCCCcEE
Q 002771 348 GWMWDVGIHTLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSSIQYL 427 (882)
Q Consensus 348 ~~~~~~~~~~L~~L~Ls~n~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 427 (882)
|.+.+.+|..+.++++|++|
T Consensus 294 ------------------------------------------------------------n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 294 ------------------------------------------------------------NSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred ------------------------------------------------------------CeeccCCChhHcCCCCCcEE
Confidence 22223344444555556666
Q ss_pred eccCceeeccCCccccCCCcceEEcccCccCCcCchhhhccCCcCeEeccCccccCcCChhhhcCCCCcEEEccCCcCcc
Q 002771 428 EMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSG 507 (882)
Q Consensus 428 ~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 507 (882)
++++|.+++ ..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++
T Consensus 314 ~l~~n~~~~-----------------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 314 HLFSNNFTG-----------------------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred ECCCCccCC-----------------------cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 655555544 445556666777777777777777777777777777888888787777
Q ss_pred ccCccccC-CCccEEEccCCcCccccchhhccCCCCCEEeCCCCccCCCCCccccCCCCCcEEECcCccCCCccchhhhC
Q 002771 508 EIPQCFGN-SALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEI 586 (882)
Q Consensus 508 ~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~ 586 (882)
.+|..+.. ++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..|.++++|+.|++++|.+++.+|..+..
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 450 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc
Confidence 77777766 77888888888888888888888888899999999888888888888899999999999998888888888
Q ss_pred CCCCcEEEccCccccccCCCCCCCCCCCCCcEEECCCCcCccCCChHHHhhhhhcccCCCCceeEEEEeeeccCCcccee
Q 002771 587 LPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYAC 666 (882)
Q Consensus 587 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 666 (882)
+++|+.|++++|++.+.+|... ..++|+.||+++|++++.+|..+ .+
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~~-~~----------------------------- 497 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKL-GS----------------------------- 497 (968)
T ss_pred CCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChhh-hh-----------------------------
Confidence 8999999999999888777654 35789999999999999888653 11
Q ss_pred eeeEEEEeecchhHHHhhhccccEeeCCCCcccccchhhhcCCCCCCEEeCCCCccCccCChhhhccCCCCEEeCCCCcc
Q 002771 667 YESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKL 746 (882)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l 746 (882)
++.|+.|+|++|++++.+|..++++++|++|+|++|.++|.+|..++++++|+.|||++|++
T Consensus 498 ------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 498 ------------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred ------------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCEEeCcCCcCccCCCCCCcCCccCcccccCCCCCCCCC
Q 002771 747 VGQIPMQMASLKSLSVLNLSHNQLEGPVPRGTQFNTFQNDSYAGNPGLCGFP 798 (882)
Q Consensus 747 ~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~ 798 (882)
+|.+|..+..+++|+.+++++|+++|.+|..++|.++...++.||+++||.+
T Consensus 560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-57 Score=567.88 Aligned_cols=514 Identities=33% Similarity=0.536 Sum_probs=399.6
Q ss_pred CCCCEEECCCCCCCCCCCcccccCCCCCCEEeCCCCCCCCCCCcccc-CCCCCCEEECcCCCCCCCccccccCCCCCCEE
Q 002771 112 PRLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLG-NLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYL 190 (882)
Q Consensus 112 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 190 (882)
.+++.|+|++|.+.+. ++..+..+++|++|+|++|.+++.+|..+. .+++|++|+|++|.+++.+|. +.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 3677888888877765 566777778888888888777777776654 777777777777777766664 456677777
Q ss_pred EccCCcCCCCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCccc
Q 002771 191 NFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLS 270 (882)
Q Consensus 191 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 270 (882)
++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 77777776666666666777777777766666666666666666666666666666666666666666666666665555
Q ss_pred ccccchhhcCCCCCCceeccccccCCCccccccccccccCccccccccCCCCChhhhcCCCccEEEccccccccCCCchh
Q 002771 271 GTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWM 350 (882)
Q Consensus 271 ~~i~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~i~~~~~~~~ 350 (882)
+.+| ..+..+++|++|++++|.+.+.+|.
T Consensus 226 ~~~p-------------------------------------------------~~l~~l~~L~~L~L~~n~l~~~~p~-- 254 (968)
T PLN00113 226 GEIP-------------------------------------------------YEIGGLTSLNHLDLVYNNLTGPIPS-- 254 (968)
T ss_pred CcCC-------------------------------------------------hhHhcCCCCCEEECcCceeccccCh--
Confidence 4333 3333344444444444444333332
Q ss_pred hcccCCCccEEeCCCCccCCCCCCCCCCCceEEccCcccCCcCCCCCCCCcEEEcccccccccCCCcccCCCCCcEEecc
Q 002771 351 WDVGIHTLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSSIQYLEMS 430 (882)
Q Consensus 351 ~~~~~~~L~~L~Ls~n~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls 430 (882)
.++++++|++|+++
T Consensus 255 ------------------------------------------------------------------~l~~l~~L~~L~L~ 268 (968)
T PLN00113 255 ------------------------------------------------------------------SLGNLKNLQYLFLY 268 (968)
T ss_pred ------------------------------------------------------------------hHhCCCCCCEEECc
Confidence 23333333334444
Q ss_pred CceeeccCCccccC-CCcceEEcccCccCCcCchhhhccCCcCeEeccCccccCcCChhhhcCCCCcEEEccCCcCcccc
Q 002771 431 NNSFSGQIPQCLVN-STVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEI 509 (882)
Q Consensus 431 ~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 509 (882)
+|.+++.+|..+.. .+|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+
T Consensus 269 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred CCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 44433333333322 44455555555555566667788899999999999999999999999999999999999999999
Q ss_pred CccccC-CCccEEEccCCcCccccchhhccCCCCCEEeCCCCccCCCCCccccCCCCCcEEECcCccCCCccchhhhCCC
Q 002771 510 PQCFGN-SALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILP 588 (882)
Q Consensus 510 p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 588 (882)
|..++. ++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++..|..+..++
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 998887 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEccCccccccCCCCCCCCCCCCCcEEECCCCcCccCCChHHHhhhhhcccCCCCceeEEEEeeeccCCccceeee
Q 002771 589 ELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYE 668 (882)
Q Consensus 589 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 668 (882)
.|+.|++++|.+.+.++... ..+++|+.|++++|++.+.+|..+ .
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~-------------------------------- 473 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-G-------------------------------- 473 (968)
T ss_pred CCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc-c--------------------------------
Confidence 99999999999999887654 568999999999999998888532 0
Q ss_pred eEEEEeecchhHHHhhhccccEeeCCCCcccccchhhhcCCCCCCEEeCCCCccCccCChhhhccCCCCEEeCCCCcccc
Q 002771 669 SIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVG 748 (882)
Q Consensus 669 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~ 748 (882)
.+.|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|..++++++|++|+|++|.++|
T Consensus 474 ----------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 537 (968)
T PLN00113 474 ----------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537 (968)
T ss_pred ----------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccc
Confidence 3568999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCEEeCcCCcCccCCCCC-CcCCccCcccccCCCCCCC
Q 002771 749 QIPMQMASLKSLSVLNLSHNQLEGPVPRG-TQFNTFQNDSYAGNPGLCG 796 (882)
Q Consensus 749 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg 796 (882)
.+|..+..+++|+.|++++|+++|.+|.. ..+..+....+.+|+..+.
T Consensus 538 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 586 (968)
T PLN00113 538 QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586 (968)
T ss_pred cCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence 99999999999999999999999999975 2344455666777776543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-36 Score=315.46 Aligned_cols=389 Identities=27% Similarity=0.319 Sum_probs=201.5
Q ss_pred CEEeCCCCCCCCCCCccccCC--CCCCEEECcCCCCCCCccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEecc
Q 002771 140 TLLNLSSSNFTGSIPPSLGNL--TQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLY 217 (882)
Q Consensus 140 ~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 217 (882)
+.||.+++.+....-..+... +.-+.||+++|.+..+-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 446666665542211111111 12344666666666555556666666666666666655 445433334445555555
Q ss_pred CCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceeccccccCCC
Q 002771 218 FNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSLSLT 297 (882)
Q Consensus 218 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~~~~ 297 (882)
+|.|+..-.+.+..++.|+.|||+.|.++.+...+|..-.++++|+|++|.|+ .+....|..+.
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~ln--------------- 197 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLN--------------- 197 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccc---------------
Confidence 55555444444445555555555555554444444444444555555555444 33333444444
Q ss_pred ccccccccccccCccccccccCCCCCh-hhhcCCCccEEEccccccccCCCchhhcccCCCccEEeCCCCccCCCCCCCC
Q 002771 298 TKLTVSSSFLNLSRLGLSACKISKFPV-ILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRSIKRLPW 376 (882)
Q Consensus 298 ~~~~~~~~~~~L~~L~L~~~~l~~ip~-~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~i~~~~~ 376 (882)
+|..|.|+.|.++.+|. .|+++++|+.|+|..|+|...--..|. ++++|+.|.+..|.+..+..+.|
T Consensus 198 ----------sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFq--gL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 198 ----------SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ--GLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred ----------hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhc--CchhhhhhhhhhcCcccccCcce
Confidence 44444445555557774 456688888888888887633222333 66777777777776666554333
Q ss_pred CCCceEEccCcccCCcCCCCCCCCcEEEcccccccccCCCcccCCCCCcEEeccCceeeccCCccccC-CCcceEEcccC
Q 002771 377 KNLKNLYLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVN-STVKFLDLRMN 455 (882)
Q Consensus 377 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n 455 (882)
-. +..+++|+|+.|+++..-..++.++++|+.|++|+|.+...-++.+.. .+|++|+|++|
T Consensus 266 y~------------------l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 266 YG------------------LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred ee------------------ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 21 223344444444444444455555555555555555554332222222 44555555555
Q ss_pred ccCCcCchhhhccCCcCeEeccCccccCcCChhhhcCCCCcEEEccCCcCccccCccccCCCccEEEccCCcCccccchh
Q 002771 456 NFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQM 535 (882)
Q Consensus 456 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~ 535 (882)
+++...++.|..+..|++|.|++|.+...-...|..+++|++|||++|.++..+.+. ...
T Consensus 328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa--------------------a~~ 387 (873)
T KOG4194|consen 328 RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA--------------------AVA 387 (873)
T ss_pred ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc--------------------hhh
Confidence 555555555555555555555555544443344444444555555544444333322 123
Q ss_pred hccCCCCCEEeCCCCccCCCCCccccCCCCCcEEECcCccCCCccchhhhCCCCCcEEEcc
Q 002771 536 FAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILR 596 (882)
Q Consensus 536 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 596 (882)
|..+++|+.|++.+|++..+...+|.++++|++|||.+|.|-.+-|.+|..+ .|++|.+.
T Consensus 388 f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 5555566666666666655555556666666666666666655555555555 55555543
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=9.8e-39 Score=320.62 Aligned_cols=478 Identities=28% Similarity=0.383 Sum_probs=293.8
Q ss_pred CCCEEECcCCCCCCCccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEcc
Q 002771 162 QLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFR 241 (882)
Q Consensus 162 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 241 (882)
.|+.|++++|.+. .+.+.+.++..|.+|++++|+++ ..|.+++.+..++.++.++|+++ .+|..++.+.+|++++.+
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4555555555554 22334455555555555555555 44445555555555555555554 445555555555555555
Q ss_pred CCCCCCCCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceeccccccCCCccccccccccccCccccccccCCC
Q 002771 242 HNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISK 321 (882)
Q Consensus 242 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ 321 (882)
+|.+. .+|+.++.+..|+.++..+|+++ ..|. ++..+.+|..+++.+|.+ .+
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l-------------------------~~ 174 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKL-------------------------KA 174 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCch-HHHHHHHHHHhhccccch-------------------------hh
Confidence 55554 34444555555555555555554 3332 344444444444444433 23
Q ss_pred CChhhhcCCCccEEEccccccccCCCchhhcccCCCccEEeCCCCccCCCCCCCCCCCceEEccCcccCCcCCCCCCCCc
Q 002771 322 FPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNLLRGRLLDLPPLMT 401 (882)
Q Consensus 322 ip~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~ 401 (882)
+|+..-+++.|++||...|.++ .+|+.++ .+.+| +.||+.
T Consensus 175 l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg--~l~~L---------------------~~LyL~---------------- 214 (565)
T KOG0472|consen 175 LPENHIAMKRLKHLDCNSNLLE-TLPPELG--GLESL---------------------ELLYLR---------------- 214 (565)
T ss_pred CCHHHHHHHHHHhcccchhhhh-cCChhhc--chhhh---------------------HHHHhh----------------
Confidence 4433333444444444444332 2222222 22222 222222
Q ss_pred EEEcccccccccCCCcccCCCCCcEEeccCceeeccCCccccC--CCcceEEcccCccCCcCchhhhccCCcCeEeccCc
Q 002771 402 IFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVN--STVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGN 479 (882)
Q Consensus 402 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 479 (882)
.|++. ..| .|.+|..|++|.++.|.+. .+|..... .++..||+++|+++. .|..+.-+.+|+.||+++|
T Consensus 215 -----~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 215 -----RNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNN 285 (565)
T ss_pred -----hcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCC
Confidence 22222 344 6788888888998888887 56655543 788888888888874 5666777788888888888
Q ss_pred cccCcCChhhhcCCCCcEEEccCCcCccccCccccC---CCccEEEc--cCCcCc---------cc-cc---hhhccCCC
Q 002771 480 KLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGN---SALKVFDM--RMNRFN---------GS-IP---QMFAKSCD 541 (882)
Q Consensus 480 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~---~~L~~L~L--~~n~l~---------~~-~~---~~~~~l~~ 541 (882)
.++ .+|.+++++ .|+.|-+.+|.+...-.+.+.. .-|++|.= ..-.++ +. .+ .......+
T Consensus 286 ~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~ 363 (565)
T KOG0472|consen 286 DIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIIT 363 (565)
T ss_pred ccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhh
Confidence 888 467778888 8888888888764321111111 11111110 000000 00 11 11223456
Q ss_pred CCEEeCCCCccCCCCCccccCC--CCCcEEECcCccCCCccchhhhCCCCCcEEEccCccccccCCCCCCCCCCCCCcEE
Q 002771 542 LRSLNLNGNQLEGPLSPSLINC--RYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRIL 619 (882)
Q Consensus 542 L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 619 (882)
.+.|++++-+++....+.|..- .-....+++.|++.+ +|..+..+..+.+.-+..|+..+.+|... +.+++|..|
T Consensus 364 tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~isfv~~~l--~~l~kLt~L 440 (565)
T KOG0472|consen 364 TKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKISFVPLEL--SQLQKLTFL 440 (565)
T ss_pred hhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccccchHHH--Hhhhcceee
Confidence 7788888888874433344322 237788888888854 46666666666555444444445555544 668889999
Q ss_pred ECCCCcCccCCChHHHhhhhhcccCCCCceeEEEEeeeccCCccceeeeeEEEEeecchhHHHhhhccccEeeCCCCccc
Q 002771 620 DLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQ 699 (882)
Q Consensus 620 ~Ls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 699 (882)
+|++|.+. .+|.++.+ +..|+.||+|.|+|.
T Consensus 441 ~L~NN~Ln-~LP~e~~~------------------------------------------------lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 441 DLSNNLLN-DLPEEMGS------------------------------------------------LVRLQTLNLSFNRFR 471 (565)
T ss_pred ecccchhh-hcchhhhh------------------------------------------------hhhhheecccccccc
Confidence 99988775 56766422 345899999999998
Q ss_pred ccchhhhcCCCCCCEEeCCCCccCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCEEeCcCCcCccCCCCC
Q 002771 700 GGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG 777 (882)
Q Consensus 700 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 777 (882)
.+|..+..+..|+.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|++|++++|+|. .|+.
T Consensus 472 -~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 472 -MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred -cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence 88999999999999988999999888888999999999999999997 68889999999999999999998 5543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.3e-38 Score=316.83 Aligned_cols=481 Identities=26% Similarity=0.345 Sum_probs=311.2
Q ss_pred EEEEECCCCCCccccCCCCcccCCCCCCEEECCCCCCCCCCCcccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEE
Q 002771 88 VIGLDLSCSWLHGSISSNSSLFFLPRLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLD 167 (882)
Q Consensus 88 v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 167 (882)
...+.+++|.+.-. .+ ++.++..|.+|++++|.+.. .|++++.+..++.|+.++|++. .+|++++.+..|+.|+
T Consensus 47 l~~lils~N~l~~l-~~--dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLEVL-RE--DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchhhc-cH--hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 45567777766532 22 67788888888888888864 6778888888888888888888 7888888888888888
Q ss_pred CcCCCCCCCccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCC
Q 002771 168 LSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSG 247 (882)
Q Consensus 168 Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 247 (882)
.++|.+. .+|+.++.+..|+.++..+|+++ ..|+.+..+.+|..+++.+|.+....|. .-+++.|++||..+|.++
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE- 196 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhh-
Confidence 8888877 56777888888888888888887 6677788888888888888888854444 444888888888888775
Q ss_pred CCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceeccccccCCCccccccccccccCccccccccCCCCChhhh
Q 002771 248 SVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILK 327 (882)
Q Consensus 248 ~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~ 327 (882)
.+|+.++.+.+|+-|+|..|++. .+| .|..|..|++|.++.|.++.. .......++++..|++..|++.++|..+.
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~vLDLRdNklke~Pde~c 272 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEML-PAEHLKHLNSLLVLDLRDNKLKEVPDEIC 272 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhh-HHHHhcccccceeeeccccccccCchHHH
Confidence 67888888888888888888887 666 688888888888888887422 22333467777888888888888888777
Q ss_pred cCCCccEEEccccccccCCCchhhcccCCCccEEeCCCCccCCCCC-----CCCCCCceEEc--cCcccCCcCCCCCCCC
Q 002771 328 TQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRSIKR-----LPWKNLKNLYL--DSNLLRGRLLDLPPLM 400 (882)
Q Consensus 328 ~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~i~~-----~~~~~L~~L~l--~~n~l~~~~~~~~~~L 400 (882)
.+.+|+.||+++|.|++. |..++ ++ +|+.|.+.+|.+.+|.. +.-.-|++|.= ....+...
T Consensus 273 lLrsL~rLDlSNN~is~L-p~sLg--nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s-------- 340 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSL-PYSLG--NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS-------- 340 (565)
T ss_pred HhhhhhhhcccCCccccC-Ccccc--cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC--------
Confidence 777888888888888743 44444 45 77777777777766433 11111222210 00000000
Q ss_pred cEEEcccccccccCCCcccCCCCCcEEeccCceeeccCCcccc-C---CCcceEEcccCccCCcCchhhhccCCcCe-Ee
Q 002771 401 TIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLV-N---STVKFLDLRMNNFQGIIPQTYAKDCNLTF-LK 475 (882)
Q Consensus 401 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~ 475 (882)
+.=.-+.-......-.....+.+.+.|++++-+++ .+|...+ . .-....+++.|++.. +|..+..+..+.. +.
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~ 418 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLV 418 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHH
Confidence 00000000000011112334556677777777776 3443332 2 226677777777763 4544554444443 34
Q ss_pred ccCccccCcCChhhhcCCCCcEEEccCCcCccccCccccC-CCccEEEccCCcCccccchhhccCCCCCEEeCCCCccCC
Q 002771 476 LNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGN-SALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEG 554 (882)
Q Consensus 476 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 554 (882)
+++|.+ +.+|..++.+++|..|++++|-+. .+|..++. ..|+.|+++.|+|. .+|.+...+..++.+-.++|++..
T Consensus 419 lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 419 LSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred hhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc
Confidence 444444 366667777777777777766665 45555544 55777777777665 455555555555666566666665
Q ss_pred CCCccccCCCCCcEEECcCccCCCccchhhhCCCCCcEEEccCccc
Q 002771 555 PLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRF 600 (882)
Q Consensus 555 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l 600 (882)
..|..+.++.+|..||+.+|.+.. +|..+++|++|++|.+.+|+|
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCcc
Confidence 555556666666666666666643 344455555555555555554
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-36 Score=312.04 Aligned_cols=386 Identities=19% Similarity=0.239 Sum_probs=309.3
Q ss_pred CCEEECCCCCCCCCCCcccccC-C-CCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCCCEEE
Q 002771 114 LQKLNLGSNDFNYSKISSGFSQ-L-RSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLN 191 (882)
Q Consensus 114 L~~L~Ls~n~~~~~~~~~~l~~-l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 191 (882)
-+.||.+++.+.... ...+.. + ..-+.||+++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+
T Consensus 54 ~~lldcs~~~lea~~-~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELEAID-KSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD 131 (873)
T ss_pred ceeeecCcccccccc-ccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence 356788888775321 111222 2 33567999999999888899999999999999999988 7787777777899999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCcccc
Q 002771 192 FGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSG 271 (882)
Q Consensus 192 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 271 (882)
|.+|.|+..-.+.+..++.|+.|||+.|.++..--..|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit- 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT- 210 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-
Confidence 9999999888889999999999999999998655566777789999999999999988899999999999999999998
Q ss_pred cccchhhcCCCCCCceeccccccCCCccccccccccccCccccccccCCCCChhhhcCCCccEEEccccccccCCCchhh
Q 002771 272 TVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMW 351 (882)
Q Consensus 272 ~i~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~i~~~~~~~~~ 351 (882)
.+|...|.++++|+.|+|..|.+.... -..|..+++|+.|.+..|.|.......|+
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive------------------------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVE------------------------GLTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeeh------------------------hhhhcCchhhhhhhhhhcCcccccCccee
Confidence 888889999999999999999883221 12367788999999999999988888888
Q ss_pred cccCCCccEEeCCCCccCCCCCCCCCCCceEEccCcccCCcCCCCCCCCcEEEcccccccccCCCcccCCCCCcEEeccC
Q 002771 352 DVGIHTLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSSIQYLEMSN 431 (882)
Q Consensus 352 ~~~~~~L~~L~Ls~n~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 431 (882)
.+.++++|+|+.|+++.+..+.+-. +..|+.|++|+|.|..+-++++..+++|++|+|++
T Consensus 267 --~l~kme~l~L~~N~l~~vn~g~lfg------------------Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 267 --GLEKMEHLNLETNRLQAVNEGWLFG------------------LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS 326 (873)
T ss_pred --eecccceeecccchhhhhhcccccc------------------cchhhhhccchhhhheeecchhhhcccceeEeccc
Confidence 8999999999999988877654433 34567788888888888889999999999999999
Q ss_pred ceeeccCCccccC-CCcceEEcccCccCCcCchhhhccCCcCeEeccCccccCcCC---hhhhcCCCCcEEEccCCcCcc
Q 002771 432 NSFSGQIPQCLVN-STVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLP---PSLINCFSLHVIDVGNNNLSG 507 (882)
Q Consensus 432 n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~Ls~n~l~~ 507 (882)
|+++..-+..+.. ..|++|+|++|.++.+-...|..+.+|++|||++|.++..+- ..|..+++|+.|++.+|++..
T Consensus 327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence 9999766666655 899999999999999989999999999999999999987543 446667788888888777764
Q ss_pred ccCccccC-CCccEEEccCCcCccccchhhccCCCCCEEeC
Q 002771 508 EIPQCFGN-SALKVFDMRMNRFNGSIPQMFAKSCDLRSLNL 547 (882)
Q Consensus 508 ~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 547 (882)
+.-..|.. .+|+.|||.+|.|..+-|.+|..+ .|++|.+
T Consensus 407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 33333333 445555555555544444444444 4444443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-36 Score=335.37 Aligned_cols=504 Identities=28% Similarity=0.339 Sum_probs=280.5
Q ss_pred eCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEeccCCccc
Q 002771 143 NLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLK 222 (882)
Q Consensus 143 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 222 (882)
|++...+. .+|..+..-..++.|+++.|.+....-+.+.+.-+|+.|++++|++. ..|..+..+..|+.|.++.|.+.
T Consensus 4 d~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 4 DASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred ccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh
Confidence 34444444 44444443334555555555433211122333334555555555554 44555555556666666665555
Q ss_pred ccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceeccccccCCCccccc
Q 002771 223 GTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTV 302 (882)
Q Consensus 223 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~~~~~~~~~ 302 (882)
..|....++.+|+++.|.+|.+. ..|..+..+++|+.|++++|.+. .+|. .+..++.+..+..++| .. ..
T Consensus 82 -~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N-~~-~~---- 151 (1081)
T KOG0618|consen 82 -SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNN-EK-IQ---- 151 (1081)
T ss_pred -hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcc-hh-hh----
Confidence 34555556666666666666554 45666666666666666666665 4554 5555566666666665 10 00
Q ss_pred cccccccCccccccccCCCCChhhhcCCCccEEEccccccccCCCchhhcccCCCccEEeCCCCccCCCCCCCCCCCceE
Q 002771 303 SSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRSIKRLPWKNLKNL 382 (882)
Q Consensus 303 ~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~i~~~~~~~L~~L 382 (882)
.++ .. .++.+++..|.+.+.++.... .+.. .|||.+|.+..+....+.+|+.+
T Consensus 152 ------------------~lg----~~-~ik~~~l~~n~l~~~~~~~i~--~l~~--~ldLr~N~~~~~dls~~~~l~~l 204 (1081)
T KOG0618|consen 152 ------------------RLG----QT-SIKKLDLRLNVLGGSFLIDIY--NLTH--QLDLRYNEMEVLDLSNLANLEVL 204 (1081)
T ss_pred ------------------hhc----cc-cchhhhhhhhhcccchhcchh--hhhe--eeecccchhhhhhhhhccchhhh
Confidence 111 11 144555555555555544332 2222 36666665553333444444444
Q ss_pred EccCcccCCcCCCCCCCCcEEEcccccccccCCCcccCCCCCcEEeccCceeeccCCccccCCCcceEEcccCccCCcCc
Q 002771 383 YLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIP 462 (882)
Q Consensus 383 ~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~ 462 (882)
....|++ ... --.-++|+.|+.++|.++ .......+.+|++++++.|++++..
T Consensus 205 ~c~rn~l---------------------s~l----~~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp- 257 (1081)
T KOG0618|consen 205 HCERNQL---------------------SEL----EISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLP- 257 (1081)
T ss_pred hhhhccc---------------------ceE----EecCcchheeeeccCcce-eeccccccccceeeecchhhhhcch-
Confidence 4444333 211 112357888888888887 4444555678888999998888655
Q ss_pred hhhhccCCcCeEeccCccccCcCChhhhcCCCCcEEEccCCcCccccCcccc-CCCccEEEccCCcCccccchhhccCCC
Q 002771 463 QTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFG-NSALKVFDMRMNRFNGSIPQMFAKSCD 541 (882)
Q Consensus 463 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~ 541 (882)
.++..+.+|+.++..+|.++ .+|..+...++|+.|++..|.+. .+|.... .++|++|+|..|++....+..|.-...
T Consensus 258 ~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 88888999999999999885 67777778888888888888887 4444444 377888888888777555544444433
Q ss_pred -CCEEeCCCCccCCCCCccccCCCCCcEEECcCccCCCccchhhhCCCCCcEEEccCccccccCCCCCCCCCCCCCcEEE
Q 002771 542 -LRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILD 620 (882)
Q Consensus 542 -L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 620 (882)
|..|+.+.|++.......=.....|+.|++.+|.+++..-..+.+.+.|+.|+|++|++...... ...++..|++|+
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas--~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS--KLRKLEELEELN 413 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH--HHhchHHhHHHh
Confidence 66666666666533211112345566666666666665555556666666666666655322211 124455556666
Q ss_pred CCCCcCccCCChHHHhhhhhcccCCCCceeEEEEeeeccCCccceeeeeEEEEeecchhHHHhhhccccEeeCCCCcccc
Q 002771 621 LSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQG 700 (882)
Q Consensus 621 Ls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 700 (882)
||+|+++ .+|.... + +..|++|...+|++.
T Consensus 414 LSGNkL~-~Lp~tva-~-----------------------------------------------~~~L~tL~ahsN~l~- 443 (1081)
T KOG0618|consen 414 LSGNKLT-TLPDTVA-N-----------------------------------------------LGRLHTLRAHSNQLL- 443 (1081)
T ss_pred cccchhh-hhhHHHH-h-----------------------------------------------hhhhHHHhhcCCcee-
Confidence 6666654 2332211 0 334555555555554
Q ss_pred cchhhhcCCCCCCEEeCCCCccCcc-CChhhhccCCCCEEeCCCCcccccCCccccCCCCCCEEeCcCC
Q 002771 701 GIPAIVGKLNSLKGLNISHNNLTGG-IPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHN 768 (882)
Q Consensus 701 ~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 768 (882)
..| ++.+++.|+.+|+|.|+++.. +|..... ++|++||+++|.-.-.....|..++++...++.-|
T Consensus 444 ~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 444 SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 344 556666666666666666532 2322222 55666666666533333344445555555555544
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-35 Score=323.81 Aligned_cols=485 Identities=28% Similarity=0.336 Sum_probs=289.6
Q ss_pred CCCEEECCCCCCCCCCCcccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCCCEEEc
Q 002771 113 RLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNF 192 (882)
Q Consensus 113 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 192 (882)
.+..|+++.|.+-... -+++.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.|. ..|...+++.+|++|.|
T Consensus 22 ~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhee
Confidence 3666666666654322 123334444666666666665 56666666666666666666655 45566666666666666
Q ss_pred cCCcCCCCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCccccc
Q 002771 193 GGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGT 272 (882)
Q Consensus 193 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 272 (882)
.+|.+. ..|..+..+++|+.|++++|.+. .+|..+..++.+..+..++|... ..++... ++.+++..|.+.+.
T Consensus 99 ~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~~-ik~~~l~~n~l~~~ 171 (1081)
T KOG0618|consen 99 KNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI----QRLGQTS-IKKLDLRLNVLGGS 171 (1081)
T ss_pred ccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh----hhhcccc-chhhhhhhhhcccc
Confidence 666665 55666666666666666666665 55666666666666666666211 1122211 55555555555544
Q ss_pred ccchhhcCCCCCCceeccccccCCCccccccccccccCccccccccCCCCChhhhcCCCccEEEccccccccCCCchhhc
Q 002771 273 VELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWD 352 (882)
Q Consensus 273 i~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~i~~~~~~~~~~ 352 (882)
+.. ++..+++ .|+|.+|.+. -..+..+.+|+.|....|++.
T Consensus 172 ~~~-~i~~l~~--~ldLr~N~~~---------------------------~~dls~~~~l~~l~c~rn~ls--------- 212 (1081)
T KOG0618|consen 172 FLI-DIYNLTH--QLDLRYNEME---------------------------VLDLSNLANLEVLHCERNQLS--------- 212 (1081)
T ss_pred hhc-chhhhhe--eeecccchhh---------------------------hhhhhhccchhhhhhhhcccc---------
Confidence 433 3333333 3555555441 111333444444444444433
Q ss_pred ccCCCccEEeCCCCccCCCCCCCCCCCceEEccCcccCCcCCCC-CCCCcEEEcccccccccCCCcccCCCCCcEEeccC
Q 002771 353 VGIHTLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNLLRGRLLDL-PPLMTIFSISNNYLTGEIPSSFCNLSSIQYLEMSN 431 (882)
Q Consensus 353 ~~~~~L~~L~Ls~n~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 431 (882)
.+.. .-++++.|+.++|.+....... +.+++.++++.|++++ +|++++.+.+|+.++..+
T Consensus 213 -----------------~l~~-~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 213 -----------------ELEI-SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANH 273 (1081)
T ss_pred -----------------eEEe-cCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccc
Confidence 2211 1145555666666665333332 6677788888888874 458888888888888888
Q ss_pred ceeeccCCccccCCCcceEEcccCccCCcCchhhhccCCcCeEeccCccccCcCChhhhcCCCCcEEEccCCcCccccCc
Q 002771 432 NSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQ 511 (882)
Q Consensus 432 n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 511 (882)
|+++ .+|. .+...++|+.|.+..|.++ .+|+.....++|++|+|..|++. ..|+
T Consensus 274 N~l~-~lp~-----------------------ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~ 327 (1081)
T KOG0618|consen 274 NRLV-ALPL-----------------------RISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPD 327 (1081)
T ss_pred hhHH-hhHH-----------------------HHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccch
Confidence 8885 3332 2233344445555555544 34444444555555666555554 2333
Q ss_pred cc-cC--CCccEEEccCCcCccccchhhccCCCCCEEeCCCCccCCCCCccccCCCCCcEEECcCccCCCccchhhhCCC
Q 002771 512 CF-GN--SALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILP 588 (882)
Q Consensus 512 ~~-~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 588 (882)
.+ .. ..|..|+.+.|++.......=...+.|+.|++.+|.++...-+.+.+...|+.|+|++|++.......+.++.
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle 407 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE 407 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchH
Confidence 22 11 3355556666665543322223345677778888888776666777788888888888888666666677888
Q ss_pred CCcEEEccCccccccCCCCCCCCCCCCCcEEECCCCcCccCCChHHHhhhhhcccCCCCceeEEEEeeeccCCccceeee
Q 002771 589 ELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYE 668 (882)
Q Consensus 589 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 668 (882)
.|+.|+|++|+++... ... ..+..|++|...+|++. ..| ++.
T Consensus 408 ~LeeL~LSGNkL~~Lp-~tv--a~~~~L~tL~ahsN~l~-~fP-e~~--------------------------------- 449 (1081)
T KOG0618|consen 408 ELEELNLSGNKLTTLP-DTV--ANLGRLHTLRAHSNQLL-SFP-ELA--------------------------------- 449 (1081)
T ss_pred HhHHHhcccchhhhhh-HHH--HhhhhhHHHhhcCCcee-ech-hhh---------------------------------
Confidence 8888888888875432 322 56778888888888876 345 211
Q ss_pred eEEEEeecchhHHHhhhccccEeeCCCCcccccchhhhcCCCCCCEEeCCCCccCccCChhhhccCCCCEEeCCCC
Q 002771 669 SIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSN 744 (882)
Q Consensus 669 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 744 (882)
.++.|+.+|+|.|+++...-..--.-++|++|||++|.=....-..|..+.++...++.-|
T Consensus 450 ---------------~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 450 ---------------QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ---------------hcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 1577999999999998543332223389999999999854455566777777877777777
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.4e-33 Score=295.41 Aligned_cols=366 Identities=28% Similarity=0.419 Sum_probs=264.3
Q ss_pred cCCCCCCEEECCCCCCCCCCCcccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCCC
Q 002771 109 FFLPRLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLS 188 (882)
Q Consensus 109 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 188 (882)
+-|+..|-.|+++|.|+|..+|.....++.++.|.|....+. .+|+.++.|.+|++|.+++|++. .+-..++.++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 345667777778888887778888888888888888887777 67888888888888888888876 3445677788888
Q ss_pred EEEccCCcCC-CCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCC
Q 002771 189 YLNFGGNQLT-GQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSN 267 (882)
Q Consensus 189 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 267 (882)
.+.+..|++. .-+|..+..+..|..|||++|++. ..|..+..-+++-+|+|++|+|..+....|.+++.|-.|||++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 8888888876 246677778888888888888887 67788888888888888888887665566778888888888888
Q ss_pred cccccccchhhcCCCCCCceeccccccCCCccccccccccccCcccccccc--CCCCChhhhcCCCccEEEccccccccC
Q 002771 268 KLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACK--ISKFPVILKTQLQLEWLDLSENQIHGR 345 (882)
Q Consensus 268 ~l~~~i~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~--l~~ip~~l~~~~~L~~L~L~~n~i~~~ 345 (882)
++. .+|. .+..+.+|++|.|++|++... ...-...+..|+.|.+++.+ +..+|..+..+.+|..+|++.|.+. .
T Consensus 161 rLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~ 236 (1255)
T KOG0444|consen 161 RLE-MLPP-QIRRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-I 236 (1255)
T ss_pred hhh-hcCH-HHHHHhhhhhhhcCCChhhHH-HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-c
Confidence 886 5665 677888888888888877422 12223356667777777775 3578888888888999999988886 6
Q ss_pred CCchhhcccCCCccEEeCCCCccCCCCC--CCCCCCceEEccCcccCCcCCCCCCCCcEEEcccccccccCCCcccCCCC
Q 002771 346 VPGWMWDVGIHTLSYLDLSQNFLRSIKR--LPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSS 423 (882)
Q Consensus 346 ~~~~~~~~~~~~L~~L~Ls~n~l~~i~~--~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 423 (882)
.|+.+. .+++|+.|+||+|+++.+.. ..+.+|++|+++.|++ + .+|++++.++.
T Consensus 237 vPecly--~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL---------------------t-~LP~avcKL~k 292 (1255)
T KOG0444|consen 237 VPECLY--KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL---------------------T-VLPDAVCKLTK 292 (1255)
T ss_pred chHHHh--hhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh---------------------c-cchHHHhhhHH
Confidence 777777 78888888888888877543 3444555555444444 3 67778888888
Q ss_pred CcEEeccCceeeccCCccccCCCcceEEcccCccCCcCchhhhccCCcCeEeccCccccCcCChhhhcCCCCcEEEccCC
Q 002771 424 IQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNN 503 (882)
Q Consensus 424 L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 503 (882)
|+.|.+.+|+++- .-+|..++.+.+|+++..++|.+. ..|..++.|..|+.|.|+.|
T Consensus 293 L~kLy~n~NkL~F----------------------eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 293 LTKLYANNNKLTF----------------------EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred HHHHHhccCcccc----------------------cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccc
Confidence 8888888777652 124455566666666666666665 56666666666666666666
Q ss_pred cCccccCccccC-CCccEEEccCCcCc
Q 002771 504 NLSGEIPQCFGN-SALKVFDMRMNRFN 529 (882)
Q Consensus 504 ~l~~~~p~~~~~-~~L~~L~L~~n~l~ 529 (882)
++. .+|+.+.. +.|+.||+..|.-.
T Consensus 350 rLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 350 RLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cee-echhhhhhcCCcceeeccCCcCc
Confidence 665 45555544 56666666665533
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=5.2e-32 Score=285.35 Aligned_cols=368 Identities=28% Similarity=0.412 Sum_probs=242.4
Q ss_pred cCCCCCCEEeCCCCCCC-CCCCccccCCCCCCEEECcCCCCCCCccccccCCCCCCEEEccCCcCCCCCcccccCCCCCc
Q 002771 134 SQLRSLTLLNLSSSNFT-GSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLA 212 (882)
Q Consensus 134 ~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 212 (882)
+-++-.|-.|+++|.++ +..|.....+++++.|.|....+. .+|+.++.+.+|++|.+++|++. .+-..++.++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 44566778899999998 568888999999999999998876 78999999999999999999987 4556788889999
Q ss_pred EEeccCCccc-ccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceeccc
Q 002771 213 TVYLYFNSLK-GTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSN 291 (882)
Q Consensus 213 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~ 291 (882)
.+++..|++. .-+|..++++..|+.|||++|++. ..|..+..-+++-+|+|++|+|. +||..-|.+++.|-.|+|++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcccc
Confidence 9999998874 357888889999999999999887 67888888888888888888887 77776677777777777777
Q ss_pred cccCCCccccccccccccCccccccccCCCCChhhhcCCCccEEEccccccccCCCchhhcccCCCccEEeCCCCccCCC
Q 002771 292 NSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRSI 371 (882)
Q Consensus 292 n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~i 371 (882)
|.+ ..+|+.+..+..|++|+|++|.+.......+. .+++|+.|.+++.+-+-
T Consensus 160 NrL-------------------------e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP--smtsL~vLhms~TqRTl- 211 (1255)
T KOG0444|consen 160 NRL-------------------------EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP--SMTSLSVLHMSNTQRTL- 211 (1255)
T ss_pred chh-------------------------hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc--cchhhhhhhcccccchh-
Confidence 766 36777777777788888887766432211111 23333333333322111
Q ss_pred CCCCCCCCceEEccCcccCCcCCCCCCCCcEEEcccccccccCCCcccCCCCCcEEeccCceeeccCCccccC-CCcceE
Q 002771 372 KRLPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVN-STVKFL 450 (882)
Q Consensus 372 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L 450 (882)
.-+|.++..+.+|..+|+|.|++. .+|.++.. .+|+.|
T Consensus 212 ----------------------------------------~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 212 ----------------------------------------DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL 250 (1255)
T ss_pred ----------------------------------------hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence 123444455555555555555554 44444444 555555
Q ss_pred EcccCccCCcCchhhhccCCcCeEeccCccccCcCChhhhcCCCCcEEEccCCcCccc-cCccccC-CCccEEEccCCcC
Q 002771 451 DLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGE-IPQCFGN-SALKVFDMRMNRF 528 (882)
Q Consensus 451 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~-~~L~~L~L~~n~l 528 (882)
+|++|+|+.. ....+.-.+|+.|+++.|+++ .+|..++.++.|+.|.+.+|+++.. +|..++. ..|+++..++|.+
T Consensus 251 NLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 251 NLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred ccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 5555555432 111222345566666666665 4566666666666666666655432 4444444 5555555555555
Q ss_pred ccccchhhccCCCCCEEeCCCCccCCCCCccccCCCCCcEEECcCccCCC
Q 002771 529 NGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHIND 578 (882)
Q Consensus 529 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 578 (882)
. .+|+.+..|..|+.|.|+.|.+. .+|+++.-++.|++||+..|.-.-
T Consensus 329 E-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 329 E-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred c-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence 4 45566666666666666666655 455666666666666666665433
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.6e-21 Score=243.17 Aligned_cols=306 Identities=17% Similarity=0.177 Sum_probs=230.4
Q ss_pred CceEEccCcccCCcCCCC-CCCCcEEEcccccccccCCCcccCCCCCcEEeccCceeeccCCccccCCCcceEEcccCcc
Q 002771 379 LKNLYLDSNLLRGRLLDL-PPLMTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNF 457 (882)
Q Consensus 379 L~~L~l~~n~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l 457 (882)
|+.|.+.++.+....... +.+|+.|++.+|.+. .++..+..+++|+.|+++++...+.+|.....++|+.|++++|..
T Consensus 591 Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~ 669 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSS 669 (1153)
T ss_pred cEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCC
Confidence 444444444433222221 456777777777766 456677888899999998887666777654458899999998877
Q ss_pred CCcCchhhhccCCcCeEeccCccccCcCChhhhcCCCCcEEEccCCcCccccCccccCCCccEEEccCCcCccccchhhc
Q 002771 458 QGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQMFA 537 (882)
Q Consensus 458 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~ 537 (882)
...+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|... .+|++|++++|.+.. +|..+
T Consensus 670 L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~~-lP~~~- 744 (1153)
T PLN03210 670 LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIEE-FPSNL- 744 (1153)
T ss_pred ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCcccc-ccccc-
Confidence 77888888999999999999987666777655 78899999999987766666432 678999999998864 45444
Q ss_pred cCCCCCEEeCCCCccC-------CCCCccccCCCCCcEEECcCccCCCccchhhhCCCCCcEEEccCccccccCCCCCCC
Q 002771 538 KSCDLRSLNLNGNQLE-------GPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTR 610 (882)
Q Consensus 538 ~l~~L~~L~L~~n~l~-------~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 610 (882)
.+++|++|++.++... ...+..+..+++|+.|++++|.....+|.+++++++|+.|++++|...+.+|...
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-- 822 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-- 822 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--
Confidence 5788888888775421 1122223345789999999998888889999999999999999987666666543
Q ss_pred CCCCCCcEEECCCCcCccCCChHHHhhhhhcccCCCCceeEEEEeeeccCCccceeeeeEEEEeecchhHHHhhhccccE
Q 002771 611 APFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLERVLTIFTT 690 (882)
Q Consensus 611 ~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 690 (882)
.+++|+.|++++|.....+|.. .++++.
T Consensus 823 -~L~sL~~L~Ls~c~~L~~~p~~---------------------------------------------------~~nL~~ 850 (1153)
T PLN03210 823 -NLESLESLDLSGCSRLRTFPDI---------------------------------------------------STNISD 850 (1153)
T ss_pred -CccccCEEECCCCCcccccccc---------------------------------------------------ccccCE
Confidence 5789999999998655444421 356889
Q ss_pred eeCCCCcccccchhhhcCCCCCCEEeCCCCccCccCChhhhccCCCCEEeCCCCc
Q 002771 691 IDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNK 745 (882)
Q Consensus 691 LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 745 (882)
|+|++|.++ .+|..++.+++|+.|+|++|+--..+|..+..+++|+.|++++|.
T Consensus 851 L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 851 LNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred eECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999999998 689999999999999999854444677788899999999999885
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.4e-21 Score=243.63 Aligned_cols=233 Identities=18% Similarity=0.196 Sum_probs=109.2
Q ss_pred CCCChhhhcCCCccEEEccccccccCCCchhhcccCCCccEEeCCCCccCCCCCCCCCCCceEEccCcccCCcCCCCCCC
Q 002771 320 SKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNLLRGRLLDLPPL 399 (882)
Q Consensus 320 ~~ip~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 399 (882)
..+|..+.++++|+.|++++|...+.+|... .+++ |+.|++++|...+.+|..+.+
T Consensus 671 ~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~s---------------------L~~L~Lsgc~~L~~~p~~~~n 726 (1153)
T PLN03210 671 VELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKS---------------------LYRLNLSGCSRLKSFPDISTN 726 (1153)
T ss_pred cccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCC---------------------CCEEeCCCCCCccccccccCC
Confidence 3566666666666666666654444444322 3344 444444444444444555566
Q ss_pred CcEEEcccccccccCCCcccCCCCCcEEeccCceeeccCCccccCCCcceEEcccCccCCcCchhhhccCCcCeEeccCc
Q 002771 400 MTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGN 479 (882)
Q Consensus 400 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 479 (882)
|+.|++++|.+. .+|..+ .+++|++|++.++.... +... +....+..+...++|+.|++++|
T Consensus 727 L~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~-l~~~---------------~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 727 ISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK-LWER---------------VQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred cCeeecCCCccc-cccccc-cccccccccccccchhh-cccc---------------ccccchhhhhccccchheeCCCC
Confidence 777777777765 455544 56778888777644221 1000 00000111112234444444444
Q ss_pred cccCcCChhhhcCCCCcEEEccCCcCccccCccccCCCccEEEccCCcCccccchhhccCCCCCEEeCCCCccCCCCCcc
Q 002771 480 KLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPS 559 (882)
Q Consensus 480 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 559 (882)
...+.+|..+.++++|+.|++++|...+.+|.....++|+.|++++|.....+|.. .++|++|+|++|.++ .+|.+
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~s 864 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWW 864 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHH
Confidence 44444444444444444444444433333443332244444444444333233221 134445555555444 23444
Q ss_pred ccCCCCCcEEECcCccCCCccchhhhCCCCCcEEEccCc
Q 002771 560 LINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSN 598 (882)
Q Consensus 560 l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n 598 (882)
+..+++|+.|++++|+-...+|..+..+++|+.+++++|
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 455555555555543332333444444455555555544
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=2e-24 Score=217.96 Aligned_cols=131 Identities=24% Similarity=0.311 Sum_probs=83.0
Q ss_pred CCEEECcCCCCCCCccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEeccC-CcccccCCccccCCCCCcEEEcc
Q 002771 163 LVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYF-NSLKGTIPSRIFSLTSLKQVDFR 241 (882)
Q Consensus 163 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~ 241 (882)
-..++|..|.|+.+.|.+|+.+++|+.|||++|.|+.+-|++|.++++|..|-+.+ |+|+......|+.+..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 34555666666655555666666666666666666666666666666665555544 55654444456666666666666
Q ss_pred CCCCCCCCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceecccccc
Q 002771 242 HNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSL 294 (882)
Q Consensus 242 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~ 294 (882)
-|++.-.....|..+++|..|.+.+|.+. .+....|..+..++.+.+..|.+
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence 66666666667777777777777777665 55555677777777777776664
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=5.8e-24 Score=214.63 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=68.3
Q ss_pred hhhccCCCCCEEeCCCCccCCCCCccccCCCCCcEEECcCccCCCccchhhhCCCCCcEEEccCccccccCCCCCCCCCC
Q 002771 534 QMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPF 613 (882)
Q Consensus 534 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 613 (882)
..|..+++|+.|+|++|+++++-+.+|.+...+++|.|..|++...-...|.++..|+.|+|.+|+++...|..+ ..+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~ 345 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTL 345 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--ccc
Confidence 456777777777777777777766777777777777777777766666667777777777777777766655544 556
Q ss_pred CCCcEEECCCCcCccCCChHHHhh
Q 002771 614 SKLRILDLSHNQLTGVLPTRYLNN 637 (882)
Q Consensus 614 ~~L~~L~Ls~N~l~g~~p~~~~~~ 637 (882)
.+|.+|.|-.|++...--..|++.
T Consensus 346 ~~l~~l~l~~Np~~CnC~l~wl~~ 369 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCRLAWLGE 369 (498)
T ss_pred ceeeeeehccCcccCccchHHHHH
Confidence 667777777776655444444443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=7.4e-21 Score=219.34 Aligned_cols=165 Identities=25% Similarity=0.310 Sum_probs=85.9
Q ss_pred CCCcEEEccCCcCccccCccccCCCccEEEccCCcCccccchhhccCCCCCEEeCCCCccCCCCCccccCCCCCcEEECc
Q 002771 493 FSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIG 572 (882)
Q Consensus 493 ~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 572 (882)
++|+.|++++|++++ +|.. ...|+.|++++|.+++ +|.. ..+|++|+|++|++++ +|.. ..+|+.|+++
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls 370 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAY 370 (788)
T ss_pred cccceeECCCCcccc-CCCC--cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhh
Confidence 345555555555553 2221 1345555566665553 2321 1356677777777664 3332 2456666777
Q ss_pred CccCCCccchhhhCCCCCcEEEccCccccccCCCCCCCCCCCCCcEEECCCCcCccCCChHHHhhhhhcccCCCCceeEE
Q 002771 573 NNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVE 652 (882)
Q Consensus 573 ~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~ 652 (882)
+|+++. +|.. ..+|+.|++++|++.+ +|.. .++|+.|++++|++++ +|..
T Consensus 371 ~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l-----~s~L~~LdLS~N~Lss-IP~l------------------- 420 (788)
T PRK15387 371 NNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL-----PSELKELMVSGNRLTS-LPML------------------- 420 (788)
T ss_pred cccccc-Cccc---ccccceEEecCCcccC-CCCc-----ccCCCEEEccCCcCCC-CCcc-------------------
Confidence 777654 3321 2345566666665543 2211 2356666666666653 3321
Q ss_pred EEeeeccCCccceeeeeEEEEeecchhHHHhhhccccEeeCCCCcccccchhhhcCCCCCCEEeCCCCccCccCChhhh
Q 002771 653 VKYLSLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLA 731 (882)
Q Consensus 653 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 731 (882)
+..|+.|++++|+++ .+|..++++++|+.|+|++|++++.+|..+.
T Consensus 421 --------------------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 421 --------------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred --------------------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 122445566666665 4566666666666666666666666555553
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=3.7e-20 Score=213.62 Aligned_cols=264 Identities=26% Similarity=0.333 Sum_probs=139.1
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEec
Q 002771 137 RSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYL 216 (882)
Q Consensus 137 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 216 (882)
..-..|+++.+.++ .+|..+. ++|+.|++++|.++. +|. .+++|++|++++|+++. +|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 34556777777776 5666554 367777777777663 443 24667777777777763 3432 356667777
Q ss_pred cCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceeccccccCC
Q 002771 217 YFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSLSL 296 (882)
Q Consensus 217 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~~~ 296 (882)
++|.++ .+|.. .++|+.|++++|+++. +|. ..++|+.|++++|++++ +|. ...+|+.|++++|.++.
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~----lp~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS 336 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCC----CcccccccccccCcccc
Confidence 777665 33332 2456666677766653 332 23556666666666652 332 11345555555555532
Q ss_pred CccccccccccccCccccccccCCCCChhhhcCCCccEEEccccccccCCCchhhcccCCCccEEeCCCCccCCCCCCCC
Q 002771 297 TTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRSIKRLPW 376 (882)
Q Consensus 297 ~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~i~~~~~ 376 (882)
.+. ...+|+.|++++|++..+|.. .++|+.|++++|.++.++.. .
T Consensus 337 LP~-----lp~~Lq~LdLS~N~Ls~LP~l-----------------------------p~~L~~L~Ls~N~L~~LP~l-~ 381 (788)
T PRK15387 337 LPT-----LPSGLQELSVSDNQLASLPTL-----------------------------PSELYKLWAYNNRLTSLPAL-P 381 (788)
T ss_pred ccc-----cccccceEecCCCccCCCCCC-----------------------------CcccceehhhccccccCccc-c
Confidence 110 112344444444444444432 12344444444444444332 1
Q ss_pred CCCceEEccCcccCCcCCCCCCCCcEEEcccccccccCCCcccCCCCCcEEeccCceeeccCCccccC-CCcceEEcccC
Q 002771 377 KNLKNLYLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVN-STVKFLDLRMN 455 (882)
Q Consensus 377 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n 455 (882)
.+|+.|++++|.+++ +|..++.|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+.. .+|+.|+|++|
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cccceEEecCCcccC-CCCcccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence 345555555555443 33334555566666666553 3432 234556666666665 45554443 56666666666
Q ss_pred ccCCcCchhh
Q 002771 456 NFQGIIPQTY 465 (882)
Q Consensus 456 ~l~~~~~~~~ 465 (882)
++++..+..+
T Consensus 456 ~Ls~~~~~~L 465 (788)
T PRK15387 456 PLSERTLQAL 465 (788)
T ss_pred CCCchHHHHH
Confidence 6666555544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=1.2e-18 Score=202.66 Aligned_cols=139 Identities=27% Similarity=0.428 Sum_probs=96.9
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEec
Q 002771 137 RSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYL 216 (882)
Q Consensus 137 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 216 (882)
.+.+.|+++++.++ .+|..+. ++|+.|+|++|.++ .+|..+. .+|++|++++|+++ .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 45678888888887 5666553 47888888888887 4555443 57888888888887 4565543 47888888
Q ss_pred cCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceecccccc
Q 002771 217 YFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSL 294 (882)
Q Consensus 217 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~ 294 (882)
++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|. .+ .++|+.|++++|.+
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~-~l--p~sL~~L~Ls~N~L 316 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPA-HL--PSGITHLNVQSNSL 316 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcc-cc--hhhHHHHHhcCCcc
Confidence 888887 5666554 57889999998887 4565543 47888888888876 3442 11 13455666666655
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=1.1e-18 Score=203.21 Aligned_cols=204 Identities=22% Similarity=0.337 Sum_probs=106.5
Q ss_pred CccEEeCCCCccCCCCCCCCCCCceEEccCcccCCcCCCCCCCCcEEEcccccccccCCCcccCCCCCcEEeccCceeec
Q 002771 357 TLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSG 436 (882)
Q Consensus 357 ~L~~L~Ls~n~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 436 (882)
+|++|++++|.++.+|.....+|+.|++++|.+.......+..|+.|++++|+++ .+|..+. ++|+.|++++|++++
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred CCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence 3444444444444444332334444444444444221122344555555555555 2344332 356666666666653
Q ss_pred cCCccccCCCcceEEcccCccCCcCchhhhccCCcCeEeccCccccCcCChhhhcCCCCcEEEccCCcCccccCccccCC
Q 002771 437 QIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGNS 516 (882)
Q Consensus 437 ~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 516 (882)
+|..+ ..+|+.|++++|.++.. |..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. +
T Consensus 298 -LP~~l-p~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-~ 367 (754)
T PRK15370 298 -LPAHL-PSGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-P 367 (754)
T ss_pred -Ccccc-hhhHHHHHhcCCccccC-Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-C
Confidence 33322 13566666666666543 2222 2456666666666664 444442 56777777777665 3444332 5
Q ss_pred CccEEEccCCcCccccchhhccCCCCCEEeCCCCccCCCCCcc----ccCCCCCcEEECcCccCC
Q 002771 517 ALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPS----LINCRYLEVLDIGNNHIN 577 (882)
Q Consensus 517 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~Ls~N~l~ 577 (882)
+|++|++++|+++. +|..+. ..|+.|++++|++. .+|.. +..++.+..|++.+|+++
T Consensus 368 ~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 368 TITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 67777777777664 333332 24667777777776 33333 334466777777777765
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=3.3e-19 Score=193.65 Aligned_cols=84 Identities=23% Similarity=0.285 Sum_probs=43.3
Q ss_pred ccccEeeCCCCcccccchhhhcC-----CCCCCEEeCCCCccC----ccCChhhhccCCCCEEeCCCCccccc----CCc
Q 002771 686 TIFTTIDLSSNRFQGGIPAIVGK-----LNSLKGLNISHNNLT----GGIPSSLANLTELESLDLSSNKLVGQ----IPM 752 (882)
Q Consensus 686 ~~L~~LdLs~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~----~~ip~~l~~L~~L~~L~Ls~N~l~~~----ip~ 752 (882)
+.|+.|++++|.+++..+..+.. .+.|+.|++++|.++ ..++..+..+++|+++|+++|.++.. ...
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 45566666666665432222211 256666666666665 12333444556666666666666533 333
Q ss_pred cccCC-CCCCEEeCcCCc
Q 002771 753 QMASL-KSLSVLNLSHNQ 769 (882)
Q Consensus 753 ~l~~l-~~L~~L~ls~N~ 769 (882)
.+... +.|+++++.+|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 301 SLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHhhcCCchhhcccCCCC
Confidence 33333 456666666654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=4.2e-18 Score=184.95 Aligned_cols=264 Identities=27% Similarity=0.312 Sum_probs=169.4
Q ss_pred eEEcccCccC-CcCchhhhccCCcCeEeccCccccCc----CChhhhcCCCCcEEEccCCcCccccCccccCCCccEEEc
Q 002771 449 FLDLRMNNFQ-GIIPQTYAKDCNLTFLKLNGNKLEGP----LPPSLINCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDM 523 (882)
Q Consensus 449 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L 523 (882)
.|+|..+.++ +.....+..+.+|++|+++++.++.. ++..+...+.+++++++++.+.+ .+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~---------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL---------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence 4566666666 33444555566677777777766432 33344455556666666655532 01100
Q ss_pred cCCcCccccchhhccCCCCCEEeCCCCccCCCCCccccCCCC---CcEEECcCccCCC----ccchhhhCC-CCCcEEEc
Q 002771 524 RMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRY---LEVLDIGNNHIND----TFPYWLEIL-PELRVLIL 595 (882)
Q Consensus 524 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~Ls~N~l~~----~~~~~l~~l-~~L~~L~L 595 (882)
..++..+..+++|++|++++|.+.+..+..+..+.. |++|++++|++++ .+...+..+ ++|++|++
T Consensus 71 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 71 ------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred ------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 223455666777777777777776555555554444 8888888887763 223345556 78888888
Q ss_pred cCccccccCCCC--CCCCCCCCCcEEECCCCcCccCCChHHHhhhhhcccCCCCceeEEEEeeeccCCccceeeeeEEEE
Q 002771 596 RSNRFWGPIGNT--KTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIILT 673 (882)
Q Consensus 596 ~~n~l~~~~~~~--~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 673 (882)
++|.+++..... ..+..+++|++|++++|.+++.....+...+
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l----------------------------------- 189 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL----------------------------------- 189 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH-----------------------------------
Confidence 888876422111 1124456889999999988753211111110
Q ss_pred eecchhHHHhhhccccEeeCCCCccccc----chhhhcCCCCCCEEeCCCCccCccCChhhhc-----cCCCCEEeCCCC
Q 002771 674 MKGIDLQLERVLTIFTTIDLSSNRFQGG----IPAIVGKLNSLKGLNISHNNLTGGIPSSLAN-----LTELESLDLSSN 744 (882)
Q Consensus 674 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-----L~~L~~L~Ls~N 744 (882)
...+.|+.|++++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .+.|++|++++|
T Consensus 190 ---------~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 190 ---------KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred ---------HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 1135789999999998754 3455677889999999999999754444432 379999999999
Q ss_pred ccc----ccCCccccCCCCCCEEeCcCCcCccC
Q 002771 745 KLV----GQIPMQMASLKSLSVLNLSHNQLEGP 773 (882)
Q Consensus 745 ~l~----~~ip~~l~~l~~L~~L~ls~N~l~g~ 773 (882)
.++ ..++..+..++.|+++++++|+++..
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 997 23445667778999999999999853
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=3e-18 Score=153.73 Aligned_cols=167 Identities=26% Similarity=0.478 Sum_probs=138.5
Q ss_pred cccCCCCCCEEECCCCCCCCCCCcccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCC
Q 002771 107 SLFFLPRLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSK 186 (882)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 186 (882)
.++.+.+++.|.||+|.++. +|..++.+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. .+|..|+.++.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 56677788888888888874 6777888999999999998888 77888889999999999888876 78888999999
Q ss_pred CCEEEccCCcCCC-CCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecC
Q 002771 187 LSYLNFGGNQLTG-QIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLS 265 (882)
Q Consensus 187 L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 265 (882)
|+.|||.+|++.. .+|..|..++.|+.|++++|.+. .+|..++++++|+.|.+..|.+- .+|..++.++.|++|++.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 9999999888874 57888888888888999998887 77888889999999998888876 678888888889999998
Q ss_pred CCcccccccchhhcCC
Q 002771 266 SNKLSGTVELYDFAKL 281 (882)
Q Consensus 266 ~n~l~~~i~~~~l~~l 281 (882)
+|+++ .+|. .++++
T Consensus 182 gnrl~-vlpp-el~~l 195 (264)
T KOG0617|consen 182 GNRLT-VLPP-ELANL 195 (264)
T ss_pred cceee-ecCh-hhhhh
Confidence 88887 5554 44443
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=2.8e-15 Score=174.60 Aligned_cols=118 Identities=37% Similarity=0.641 Sum_probs=105.5
Q ss_pred cccEeeCCCCcccccchhhhcCCCCCCEEeCCCCccCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCEEeCc
Q 002771 687 IFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLS 766 (882)
Q Consensus 687 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls 766 (882)
.++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccCCCCCC--cCCccCcccccCCCCCCCCCCCCCCC
Q 002771 767 HNQLEGPVPRGT--QFNTFQNDSYAGNPGLCGFPLSESCD 804 (882)
Q Consensus 767 ~N~l~g~iP~~~--~~~~~~~~~~~gn~~lcg~~~~~~c~ 804 (882)
+|+++|.+|..- .+.......+.+|+++||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999642 12233456789999999977555663
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.8e-17 Score=148.76 Aligned_cols=157 Identities=31% Similarity=0.530 Sum_probs=138.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCCCEEEccCCcCCCCCcccccCCCCCc
Q 002771 133 FSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLA 212 (882)
Q Consensus 133 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 212 (882)
+-++.+.+.|.||+|.++ .+|..+..+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 556778889999999999 77888999999999999999998 78889999999999999999988 8899999999999
Q ss_pred EEeccCCccc-ccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceeccc
Q 002771 213 TVYLYFNSLK-GTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSN 291 (882)
Q Consensus 213 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~ 291 (882)
.||+.+|++. ..+|..|+.++.|+.|+++.|.+. .+|..++++++|+.|.+..|.+- .+|. .++.++.|++|.+.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk-eig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK-EIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH-HHHHHHHHHHHhccc
Confidence 9999999885 467888999999999999999987 78888999999999999999886 5665 777888888888877
Q ss_pred cccC
Q 002771 292 NSLS 295 (882)
Q Consensus 292 n~~~ 295 (882)
|.++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 7763
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=4.4e-14 Score=164.63 Aligned_cols=151 Identities=32% Similarity=0.504 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCCCCCcCCCccccCCCCCCCCCCCCCC---CCCCceeecC--CC--CcEEEEECCCCCC
Q 002771 26 KLCSQEQSSALLQFKQLFSFAKTSSSQCDGYQQSYPKMKYWKEDADCC---SSWDGVTCDM--VT--GQVIGLDLSCSWL 98 (882)
Q Consensus 26 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c---~~w~gv~c~~--~~--~~v~~l~L~~~~l 98 (882)
..+.++|.+||+++|+++..+. ..+|.. ..|| ..|.||.|.. .. .+|+.|+|+++.+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~---------------~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L 430 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL---------------RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGL 430 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc---------------cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCc
Confidence 3467789999999999886432 137863 3442 2699999953 22 2477888887777
Q ss_pred ccccCCCCcccCCCCCCEEECCCCCCCCCCCcccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCcc
Q 002771 99 HGSISSNSSLFFLPRLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIP 178 (882)
Q Consensus 99 ~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p 178 (882)
.|.++. .+..+++|+.|+|++|.+.+. +|..++.+++|++|+|++|.+++.+|+.++++++|++|+|++|.+++.+|
T Consensus 431 ~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 431 RGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred cccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence 776655 555555555555555555443 44445555555555555555555555555555555555555555555555
Q ss_pred ccccCC-CCCCEEEccCC
Q 002771 179 NMFTNQ-SKLSYLNFGGN 195 (882)
Q Consensus 179 ~~~~~l-~~L~~L~Ls~n 195 (882)
..++.+ .++..+++.+|
T Consensus 508 ~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 508 AALGGRLLHRASFNFTDN 525 (623)
T ss_pred hHHhhccccCceEEecCC
Confidence 444332 23334444443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=3.1e-12 Score=136.32 Aligned_cols=173 Identities=34% Similarity=0.520 Sum_probs=105.5
Q ss_pred CCCCCEEECCCCCCCCCCCcccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCCCEE
Q 002771 111 LPRLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYL 190 (882)
Q Consensus 111 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 190 (882)
+.--...||+.|++.. +|..+..+..|..+.|+.|.+. .+|..+.++..|.+|||+.|+++ .+|..+..|+ |+.|
T Consensus 74 ltdt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE--LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhcccccccc--CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3344455666666653 5555666666666666666666 56666666666666666666665 4555555543 6666
Q ss_pred EccCCcCCCCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCccc
Q 002771 191 NFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLS 270 (882)
Q Consensus 191 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 270 (882)
-+++|+++ .+|..++.+..|.+||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..+ .|..||++.|+++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 66666665 55666666666666666666665 45556666666666666666665 344555533 3556666666665
Q ss_pred ccccchhhcCCCCCCceecccccc
Q 002771 271 GTVELYDFAKLKNLKWLVLSNNSL 294 (882)
Q Consensus 271 ~~i~~~~l~~l~~L~~L~L~~n~~ 294 (882)
.+|. .|.++++|++|.|.+|++
T Consensus 225 -~iPv-~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 225 -YLPV-DFRKMRHLQVLQLENNPL 246 (722)
T ss_pred -ecch-hhhhhhhheeeeeccCCC
Confidence 5555 666666666666666665
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=3.4e-11 Score=118.30 Aligned_cols=87 Identities=32% Similarity=0.383 Sum_probs=66.6
Q ss_pred hccccEeeCCCCcccccchhhhcCCCCCCEEeCCCCccCccCChhhhccCCCCEEeCCCCccccc-CCccccCCCCCCEE
Q 002771 685 LTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQ-IPMQMASLKSLSVL 763 (882)
Q Consensus 685 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L 763 (882)
+++|+.||||+|.++ .+-.+=..+-+.+.|+|++|.|... +.++.|-+|..||+++|+|... --..+++++.|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 456777777777776 3334444567788899999988754 5678888999999999998754 23568899999999
Q ss_pred eCcCCcCccCC
Q 002771 764 NLSHNQLEGPV 774 (882)
Q Consensus 764 ~ls~N~l~g~i 774 (882)
.+.+|++++.+
T Consensus 405 ~L~~NPl~~~v 415 (490)
T KOG1259|consen 405 RLTGNPLAGSV 415 (490)
T ss_pred hhcCCCccccc
Confidence 99999999764
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=3.8e-12 Score=135.64 Aligned_cols=155 Identities=28% Similarity=0.421 Sum_probs=98.4
Q ss_pred cccCCCCCCEEECCCCCCCCCCCcccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCC
Q 002771 107 SLFFLPRLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSK 186 (882)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 186 (882)
....+..|+.+.|..|.+.. +|..+.++..|++|||+.|+++ .+|..+..|+ |+.|-+++|+++ .+|..++.+..
T Consensus 93 ~~~~f~~Le~liLy~n~~r~--ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~t 167 (722)
T KOG0532|consen 93 EACAFVSLESLILYHNCIRT--IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPT 167 (722)
T ss_pred HHHHHHHHHHHHHHhcccee--cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchh
Confidence 34445556666666666643 5666666666666666666666 5566666665 666666666665 55666666666
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCC
Q 002771 187 LSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSS 266 (882)
Q Consensus 187 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 266 (882)
|..||.+.|++. .+|..++++.+|+.|.+..|.+. .+|..+. .-.|..||+++|++. .+|-.|.+++.|++|.|.+
T Consensus 168 l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 168 LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeecc
Confidence 666666666665 45556666666666666666665 4555555 334666666666665 4566666666666666666
Q ss_pred Cccc
Q 002771 267 NKLS 270 (882)
Q Consensus 267 n~l~ 270 (882)
|.+.
T Consensus 244 NPLq 247 (722)
T KOG0532|consen 244 NPLQ 247 (722)
T ss_pred CCCC
Confidence 6665
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=1.9e-11 Score=123.35 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=36.1
Q ss_pred hccccEeeCCCCcccccchhhh-----cCCCCCCEEeCCCCccCcc----CChhhhccCCCCEEeCCCCcc
Q 002771 685 LTIFTTIDLSSNRFQGGIPAIV-----GKLNSLKGLNISHNNLTGG----IPSSLANLTELESLDLSSNKL 746 (882)
Q Consensus 685 l~~L~~LdLs~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----ip~~l~~L~~L~~L~Ls~N~l 746 (882)
+++|+.|++++|.+...-...| ...+.|++|.+.+|.|+.. +...+...+.|+.|+|++|.+
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3455666666666553322211 2356677777777777622 333455567777778888877
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.2e-11 Score=126.14 Aligned_cols=211 Identities=24% Similarity=0.245 Sum_probs=129.0
Q ss_pred cCCCCCCEEeCCCCCCCCCCC--ccccCCCCCCEEECcCCCCCCCc--cccccCCCCCCEEEccCCcCCCCCccc-ccCC
Q 002771 134 SQLRSLTLLNLSSSNFTGSIP--PSLGNLTQLVYLDLSNNSFIGEI--PNMFTNQSKLSYLNFGGNQLTGQIPSS-VGEL 208 (882)
Q Consensus 134 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l 208 (882)
.++++|+...|.++.+. ..+ .....|++++.||||.|-+.... -.....+++|+.|+++.|++....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45666666666666554 222 23456677777777777555322 233456677777777777665222111 1245
Q ss_pred CCCcEEeccCCcccccCC-ccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCce
Q 002771 209 ANLATVYLYFNSLKGTIP-SRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWL 287 (882)
Q Consensus 209 ~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L 287 (882)
+.|+.|.++.|.++...- .....+++|+.|++..|............++.|+.|||++|++...-.....+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 677777777777753221 1234567777788777753333334445567788888888877633323356677788888
Q ss_pred eccccccCCCccccc-----cccccccCccccccccCCCCCh--hhhcCCCccEEEccccccccC
Q 002771 288 VLSNNSLSLTTKLTV-----SSSFLNLSRLGLSACKISKFPV--ILKTQLQLEWLDLSENQIHGR 345 (882)
Q Consensus 288 ~L~~n~~~~~~~~~~-----~~~~~~L~~L~L~~~~l~~ip~--~l~~~~~L~~L~L~~n~i~~~ 345 (882)
+++.+.+......+. ...+++|+.|++..|++..++. .+..+.+|+.|.+..|.+...
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 888887754333332 3467888888888888866653 455667778888777777643
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=2.5e-10 Score=127.55 Aligned_cols=174 Identities=34% Similarity=0.542 Sum_probs=77.5
Q ss_pred CCCCCEEECCCCCCCCCCCcccccCCC-CCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCCCE
Q 002771 111 LPRLQKLNLGSNDFNYSKISSGFSQLR-SLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSY 189 (882)
Q Consensus 111 l~~L~~L~Ls~n~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 189 (882)
++.++.|++.+|.++. ++.....++ +|+.|++++|.+. .+|..++.+++|+.|++++|++. .+|...+.++.|+.
T Consensus 115 ~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN 190 (394)
T ss_pred ccceeEEecCCccccc--Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence 3445555555554432 333333332 4555555555544 33334445555555555555444 23333334445555
Q ss_pred EEccCCcCCCCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCcc
Q 002771 190 LNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKL 269 (882)
Q Consensus 190 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 269 (882)
|++++|++. .+|........|+++.+++|.+. ..+..+.+++++..+.+.+|++.. .+..++.+++++.|++++|.+
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccccc
Confidence 555555544 33333333344555555554322 233334444444444444444432 133444444455555555544
Q ss_pred cccccchhhcCCCCCCceecccccc
Q 002771 270 SGTVELYDFAKLKNLKWLVLSNNSL 294 (882)
Q Consensus 270 ~~~i~~~~l~~l~~L~~L~L~~n~~ 294 (882)
+ .++ .+..+.+++.|++++|.+
T Consensus 268 ~-~i~--~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 268 S-SIS--SLGSLTNLRELDLSGNSL 289 (394)
T ss_pred c-ccc--cccccCccCEEeccCccc
Confidence 4 222 144444444555444443
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=4.8e-10 Score=125.35 Aligned_cols=197 Identities=32% Similarity=0.455 Sum_probs=92.3
Q ss_pred EEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCC-CCCEEEccCCcCCCCCcccccCCCCCcEEeccCC
Q 002771 141 LLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQS-KLSYLNFGGNQLTGQIPSSVGELANLATVYLYFN 219 (882)
Q Consensus 141 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 219 (882)
.++++.+.+... +..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 355555544311 222334455555555555555 3344444442 5555555555555 33344555555555555555
Q ss_pred cccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceeccccccCCCcc
Q 002771 220 SLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTK 299 (882)
Q Consensus 220 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~~~~~~ 299 (882)
++. .+|...+..+.|+.|++++|++. .+|........|++|.+++|.+. .++. .+.++.++..+.+.+|.+.. .
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~-~~~~~~~l~~l~l~~n~~~~--~ 247 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS-SLSNLKNLSGLELSNNKLED--L 247 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecch-hhhhcccccccccCCceeee--c
Confidence 555 33333335555555555555554 33333334444555555555322 1111 34555555555555554421 1
Q ss_pred ccccccccccCccccccccCCCCChhhhcCCCccEEEccccccccCCC
Q 002771 300 LTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVP 347 (882)
Q Consensus 300 ~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~i~~~~~ 347 (882)
......+++++.|++++|.++.++. +....+++.|++++|.+....+
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 1222233334444444444444444 4444455555555555444333
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=5.6e-11 Score=123.17 Aligned_cols=209 Identities=24% Similarity=0.255 Sum_probs=140.5
Q ss_pred cCCCCCCEEECcCCCCCCCcc--ccccCCCCCCEEEccCCcCCCC--CcccccCCCCCcEEeccCCcccccCCccc-cCC
Q 002771 158 GNLTQLVYLDLSNNSFIGEIP--NMFTNQSKLSYLNFGGNQLTGQ--IPSSVGELANLATVYLYFNSLKGTIPSRI-FSL 232 (882)
Q Consensus 158 ~~l~~L~~L~Ls~n~~~~~~p--~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l 232 (882)
+++.+|+...|.++... ..+ .....|++++.|||++|-+..- +......+++|+.|+++.|++.....+.. ..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46788888888887765 222 3566788888888888877632 22345678888888888888753332222 356
Q ss_pred CCCcEEEccCCCCCCCC-chhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceeccccccCCCccccccccccccCc
Q 002771 233 TSLKQVDFRHNQLSGSV-PSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSR 311 (882)
Q Consensus 233 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~ 311 (882)
++|+.|.++.|.++-.. -.....+|+|+.|+|.+|... .+.......+..|++|+|++|++...........++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 78888888888887322 223346788888888888532 2333355667788888888888865555566667888888
Q ss_pred cccccccCCCC--Chh-----hhcCCCccEEEccccccccCC-CchhhcccCCCccEEeCCCCccCC
Q 002771 312 LGLSACKISKF--PVI-----LKTQLQLEWLDLSENQIHGRV-PGWMWDVGIHTLSYLDLSQNFLRS 370 (882)
Q Consensus 312 L~L~~~~l~~i--p~~-----l~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~ 370 (882)
|+++.|++.++ |+. ....++|++|++..|+|...- -..+. .+++|+.|.+..|.+..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~--~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR--TLENLKHLRITLNYLNK 340 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh--ccchhhhhhcccccccc
Confidence 88888888544 332 345678888888888874210 11111 45667777777776655
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=2.7e-11 Score=122.31 Aligned_cols=239 Identities=21% Similarity=0.232 Sum_probs=103.4
Q ss_pred CCCCCEEECCCCCCCCC---CCcccccCCCCCCEEeCCCC---CCCCCCCcc-------ccCCCCCCEEECcCCCCCCCc
Q 002771 111 LPRLQKLNLGSNDFNYS---KISSGFSQLRSLTLLNLSSS---NFTGSIPPS-------LGNLTQLVYLDLSNNSFIGEI 177 (882)
Q Consensus 111 l~~L~~L~Ls~n~~~~~---~~~~~l~~l~~L~~L~Ls~n---~l~~~~p~~-------l~~l~~L~~L~Ls~n~~~~~~ 177 (882)
+..++.++||+|.|... .+...+.+.+.|+..++|+- +....+|+. +-.+++|++||||.|.+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 44445555555554321 12233455556666666543 111223332 234456666666666554322
Q ss_pred c----ccccCCCCCCEEEccCCcCCCCCc-------------ccccCCCCCcEEeccCCccccc----CCccccCCCCCc
Q 002771 178 P----NMFTNQSKLSYLNFGGNQLTGQIP-------------SSVGELANLATVYLYFNSLKGT----IPSRIFSLTSLK 236 (882)
Q Consensus 178 p----~~~~~l~~L~~L~Ls~n~l~~~~p-------------~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~ 236 (882)
+ ..+..+..|++|.|.+|.+...-- .....-+.|+++..++|++... +...|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 2 223445566666666655441100 0112224455555555544311 112233344555
Q ss_pred EEEccCCCCCCC----CchhhhcCCcCCeEecCCCcccccc---cchhhcCCCCCCceeccccccCCCcccccccccccc
Q 002771 237 QVDFRHNQLSGS----VPSSVYELVNLTRLDLSSNKLSGTV---ELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNL 309 (882)
Q Consensus 237 ~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~i---~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L 309 (882)
.+.+..|.|... +...+..+++|++|||..|.++..- -...+..+++|++|++++|.++..|...+..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~----- 263 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD----- 263 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH-----
Confidence 555555544311 1123344455555555555443110 0112334445555555555444333222111
Q ss_pred CccccccccCCCCChhhhcCCCccEEEccccccccCCCchh--hcccCCCccEEeCCCCcc
Q 002771 310 SRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWM--WDVGIHTLSYLDLSQNFL 368 (882)
Q Consensus 310 ~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~i~~~~~~~~--~~~~~~~L~~L~Ls~n~l 368 (882)
..-...+.|+.|.+.+|.|+......+ .....+.|..|+|++|.+
T Consensus 264 --------------al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 --------------ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred --------------HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 111224556666666666553211111 011356666666666666
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.96 E-value=8.2e-10 Score=131.50 Aligned_cols=253 Identities=22% Similarity=0.250 Sum_probs=151.7
Q ss_pred cEEEEECCCCCCccccCCCCcccCCCCCCEEECCCCC--CCCCCCcccccCCCCCCEEeCCCCCCCCCCCccccCCCCCC
Q 002771 87 QVIGLDLSCSWLHGSISSNSSLFFLPRLQKLNLGSND--FNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLV 164 (882)
Q Consensus 87 ~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 164 (882)
+++++.+.++.+.-.. .-...+.|++|-+.+|. +... ...+|..++.|++|||++|.--+.+|+++++|-+||
T Consensus 524 ~~rr~s~~~~~~~~~~----~~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIA----GSSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred heeEEEEeccchhhcc----CCCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 4555555554432211 11234468888887775 3221 234477788888888888766667888888888888
Q ss_pred EEECcCCCCCCCccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEeccCCcc--cccCCccccCCCCCcEEEccC
Q 002771 165 YLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSL--KGTIPSRIFSLTSLKQVDFRH 242 (882)
Q Consensus 165 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~L~~ 242 (882)
+|+|++..+. .+|..++++..|.+|++..+.....+|.....+++|++|.+..... +...-..+.++.+|+.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 8888888877 7788888888888888888776656666667788888888876542 112223334455555554433
Q ss_pred CCCCCCCchhhhcCCcCC----eEecCCCcccccccchhhcCCCCCCceeccccccCCCcccc----ccc-cccccCccc
Q 002771 243 NQLSGSVPSSVYELVNLT----RLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLT----VSS-SFLNLSRLG 313 (882)
Q Consensus 243 n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~~~~~~~~----~~~-~~~~L~~L~ 313 (882)
... .+-..+..++.|. .+.+.++... .... .+..+.+|+.|.+.++.+....... ... .++++..+.
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~-~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLIS-SLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeec-ccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 222 1111122222222 2222223322 1121 5677888888888888763211100 001 155666677
Q ss_pred cccccCCCCChhhhcCCCccEEEccccccccCCCch
Q 002771 314 LSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGW 349 (882)
Q Consensus 314 L~~~~l~~ip~~l~~~~~L~~L~L~~n~i~~~~~~~ 349 (882)
+.+|.....+.+....++|+.|.+..+...+.+...
T Consensus 754 ~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 754 ILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred hhccccccccchhhccCcccEEEEecccccccCCCH
Confidence 777766666666667778888888887665554443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=8.3e-10 Score=105.21 Aligned_cols=83 Identities=30% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCCCCchhh-hcCCcCCeEecCCCcccccccchhhcCCCCCCce
Q 002771 209 ANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSV-YELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWL 287 (882)
Q Consensus 209 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L 287 (882)
.+|+.|++++|.++.. +.+..+++|++|++++|.++.. .+.+ ..+++|++|++++|++...-....+..+++|+.|
T Consensus 42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 3444444444444321 1234444555555555555432 2222 2345555555555555422222244555556666
Q ss_pred ecccccc
Q 002771 288 VLSNNSL 294 (882)
Q Consensus 288 ~L~~n~~ 294 (882)
++.+|++
T Consensus 119 ~L~~NPv 125 (175)
T PF14580_consen 119 SLEGNPV 125 (175)
T ss_dssp E-TT-GG
T ss_pred eccCCcc
Confidence 6666655
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=3.8e-10 Score=111.09 Aligned_cols=136 Identities=25% Similarity=0.288 Sum_probs=82.9
Q ss_pred ccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCC
Q 002771 181 FTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLT 260 (882)
Q Consensus 181 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 260 (882)
+..-..|+++|||+|.++ .+..+..-.+.++.|++++|.+... ..+..+++|+.|||++|.++ .+..+-.++.+++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 333456777777777766 4555666667777777777776533 23666777777777777765 3334445666777
Q ss_pred eEecCCCcccccccchhhcCCCCCCceeccccccCCCccccccccccccCccccccccCCCCC
Q 002771 261 RLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFP 323 (882)
Q Consensus 261 ~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip 323 (882)
.|.|++|.+. .+. .+.++-+|..|++++|++...........+|.|+.+.+.+|.+..+|
T Consensus 356 tL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 356 TLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 7777777665 222 45666677777777777654444444444555555555555544444
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.4e-09 Score=103.65 Aligned_cols=126 Identities=27% Similarity=0.308 Sum_probs=43.8
Q ss_pred ccCCCCCcEEeccCCcccccCCcccc-CCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCcccccccchhh-cCCC
Q 002771 205 VGELANLATVYLYFNSLKGTIPSRIF-SLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDF-AKLK 282 (882)
Q Consensus 205 l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l-~~l~ 282 (882)
+.+..++++|+|.+|.|+.. +.++ .+.+|+.|++++|.++.. +.+..++.|+.|++++|+++ .+.. .+ ..++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-T
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-cccc-chHHhCC
Confidence 44555678888888887733 3455 578999999999999854 45788899999999999998 4543 34 4689
Q ss_pred CCCceeccccccCCCccccccccccccCccccccccCCCCCh----hhhcCCCccEEE
Q 002771 283 NLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPV----ILKTQLQLEWLD 336 (882)
Q Consensus 283 ~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~----~l~~~~~L~~L~ 336 (882)
+|++|++++|.+...........+++|+.|++.+|.+...+. .+..+|+|+.||
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 999999999998766554444455555555555555443331 233444444444
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=4.3e-10 Score=125.77 Aligned_cols=244 Identities=25% Similarity=0.261 Sum_probs=137.2
Q ss_pred cCCcCeEeccCccccCcCChhhhcCCCCcEEEccCCcCccccCccccC-CCccEEEccCCcCccccchhhccCCCCCEEe
Q 002771 468 DCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGN-SALKVFDMRMNRFNGSIPQMFAKSCDLRSLN 546 (882)
Q Consensus 468 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 546 (882)
+..++.+.+..|.+.. +-..+..+.+|+.|++.+|+|...... +.. .+|++|++++|.|+... .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc--chhhccchhhhe
Confidence 3444444455555542 122244455555555655555432221 111 45555555555554432 234445566666
Q ss_pred CCCCccCCCCCccccCCCCCcEEECcCccCCCccc-hhhhCCCCCcEEEccCccccccCCCCCCCCCCCCCcEEECCCCc
Q 002771 547 LNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFP-YWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQ 625 (882)
Q Consensus 547 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 625 (882)
+++|.++.. ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+...... ..+..+..+++..|.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~----~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL----DLLKKLVLLSLLDNK 219 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch----HHHHHHHHhhccccc
Confidence 666666643 344456666677777776665544 2 35555666666666655322211 112233333555554
Q ss_pred CccCCChHHHhhhhhcccCCCCceeEEEEeeeccCCccceeeeeEEEEeecchhHHHhhhc--cccEeeCCCCcccccch
Q 002771 626 LTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLERVLT--IFTTIDLSSNRFQGGIP 703 (882)
Q Consensus 626 l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~LdLs~N~l~~~~p 703 (882)
++-.-+... +. +|+.+++++|.+. .++
T Consensus 220 i~~~~~l~~--------------------------------------------------~~~~~L~~l~l~~n~i~-~~~ 248 (414)
T KOG0531|consen 220 ISKLEGLNE--------------------------------------------------LVMLHLRELYLSGNRIS-RSP 248 (414)
T ss_pred ceeccCccc--------------------------------------------------chhHHHHHHhcccCccc-ccc
Confidence 442211000 11 3778888999887 444
Q ss_pred hhhcCCCCCCEEeCCCCccCccCChhhhccCCCCEEeCCCCccccc---CCcc-ccCCCCCCEEeCcCCcCccCCC
Q 002771 704 AIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQ---IPMQ-MASLKSLSVLNLSHNQLEGPVP 775 (882)
Q Consensus 704 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~---ip~~-l~~l~~L~~L~ls~N~l~g~iP 775 (882)
..+..+..+..|++++|++... ..+...+.+..+..+.|.+... .... ....+.+..+.+.+|+.....+
T Consensus 249 ~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 249 EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 5667788889999999988755 3355667788888888887632 2221 4566788888888888877655
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.83 E-value=6.6e-10 Score=124.25 Aligned_cols=217 Identities=31% Similarity=0.315 Sum_probs=104.4
Q ss_pred CCCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEe
Q 002771 136 LRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVY 215 (882)
Q Consensus 136 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 215 (882)
+..++.+++..|.+.. +-..+..+++|+.|++..|.|... ...+..+++|++|++++|.|+... .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 3344444444444442 222344455555555555555422 111444555555555555555332 244444555555
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCCCCCCCCc-hhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceecccccc
Q 002771 216 LYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVP-SSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSL 294 (882)
Q Consensus 216 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~ 294 (882)
+++|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+. .+. .+..+..+..+++..|.+
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~--~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIE--GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-ccc--chHHHHHHHHhhcccccc
Confidence 555555422 233445556666666665553332 1 355566666666666554 222 233334444445555555
Q ss_pred CCCcccccccccc--ccCccccccccCCCCChhhhcCCCccEEEccccccccCCCchhhcccCCCccEEeCCCCccC
Q 002771 295 SLTTKLTVSSSFL--NLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLR 369 (882)
Q Consensus 295 ~~~~~~~~~~~~~--~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 369 (882)
..... ..... +|+.+.+.++.+..++..+..+..+..+++.+|++...-... ..+.+..+....+.+.
T Consensus 221 ~~~~~---l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~----~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 221 SKLEG---LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLE----RLPKLSELWLNDNKLA 290 (414)
T ss_pred eeccC---cccchhHHHHHHhcccCccccccccccccccccccchhhcccccccccc----ccchHHHhccCcchhc
Confidence 32211 11111 366666666666565555556666777777776665432221 3344444444554443
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.80 E-value=4.2e-09 Score=125.56 Aligned_cols=130 Identities=23% Similarity=0.343 Sum_probs=83.1
Q ss_pred CCCCCCEEECCCCCCCCCCCcccccCCCCCCEEeCCCCC--CCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCC
Q 002771 110 FLPRLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSN--FTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKL 187 (882)
Q Consensus 110 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 187 (882)
.....|+..+-+|.+.. ++. -..++.|++|-+..|. +....++.|..++.|++|||++|.--+.+|..++.+-+|
T Consensus 521 ~~~~~rr~s~~~~~~~~--~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEH--IAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchhh--ccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 34556666666666532 222 1234467777777775 443333446667777777777776666777777777777
Q ss_pred CEEEccCCcCCCCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEccCC
Q 002771 188 SYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHN 243 (882)
Q Consensus 188 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 243 (882)
|+|++++..+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+...
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 77777777776 66777777777777777776554444554555677777766544
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=3.3e-09 Score=82.98 Aligned_cols=60 Identities=43% Similarity=0.616 Sum_probs=35.3
Q ss_pred CCCEEeCCCCccCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCEEeCcCCcC
Q 002771 711 SLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQL 770 (882)
Q Consensus 711 ~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 770 (882)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455566666666655555556666666666666666555555566666666666666553
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=4.6e-09 Score=82.18 Aligned_cols=61 Identities=38% Similarity=0.539 Sum_probs=57.0
Q ss_pred ccccEeeCCCCcccccchhhhcCCCCCCEEeCCCCccCccCChhhhccCCCCEEeCCCCcc
Q 002771 686 TIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKL 746 (882)
Q Consensus 686 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l 746 (882)
++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3589999999999977778999999999999999999999999999999999999999986
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.62 E-value=4.7e-08 Score=69.71 Aligned_cols=41 Identities=37% Similarity=0.784 Sum_probs=29.9
Q ss_pred CHHHHHHHHHhhhhcCCCCCCCCcCCCccccCCCCCCCCCC--CCCCCCCCceeec
Q 002771 29 SQEQSSALLQFKQLFSFAKTSSSQCDGYQQSYPKMKYWKED--ADCCSSWDGVTCD 82 (882)
Q Consensus 29 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~l~~w~~~--~~~c~~w~gv~c~ 82 (882)
+++|++||++||+++..++. ..+.+|+.. .+|| +|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~------------~~l~~W~~~~~~~~C-~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPS------------GVLSSWNPSSDSDPC-SWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-------------CCCTT--TT--S-CC-CSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccC------------cccccCCCcCCCCCe-eeccEEeC
Confidence 36899999999999986542 378999976 7899 89999995
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=1.4e-08 Score=111.55 Aligned_cols=127 Identities=27% Similarity=0.314 Sum_probs=63.6
Q ss_pred CCCEEECcCCCCCCCccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEcc
Q 002771 162 QLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFR 241 (882)
Q Consensus 162 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 241 (882)
.|.+.+.++|.+. ....++.-++.|+.|+|++|+++.. +.+..|+.|++|||++|.+....--....+. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3455555556554 3344555555666666666665532 2455556666666666655522111122222 5555555
Q ss_pred CCCCCCCCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceecccccc
Q 002771 242 HNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSL 294 (882)
Q Consensus 242 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~ 294 (882)
+|.++.. ..+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|++
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5555432 33455555555555555554333332344445555555555554
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=7.3e-09 Score=113.79 Aligned_cols=128 Identities=29% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCCEEEccCCcCCCCCcccccCCCCCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecC
Q 002771 186 KLSYLNFGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLS 265 (882)
Q Consensus 186 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 265 (882)
+|.+.+.++|.+. .+..++.-++.|+.|+|++|+++.. +.+..+++|++|||++|.+....--....+. |..|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4556666666665 4455566666666666666666543 2556666666666666666532222222223 6666666
Q ss_pred CCcccccccchhhcCCCCCCceeccccccCCCccccccccccccCccccccccCC
Q 002771 266 SNKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKIS 320 (882)
Q Consensus 266 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~ 320 (882)
+|.++ ++. .+.++++|+.||+++|-+.......+.+.+..|+.|.|.+|.+-
T Consensus 241 nN~l~-tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALT-TLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHH-hhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66665 232 45666666666666666655555555556666666666666653
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=3.2e-08 Score=86.60 Aligned_cols=86 Identities=29% Similarity=0.389 Sum_probs=47.2
Q ss_pred ccEeeCCCCcccccchhhhcCCCCCCEEeCCCCccCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCEEeCcC
Q 002771 688 FTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSH 767 (882)
Q Consensus 688 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 767 (882)
|+.++|++|.+....+..-...+.++.|+|++|.|+ .+|.++..++.|+.|+++.|.+.. .|..+..|.+|.+|+..+
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCC
Confidence 455566666665333333333345666666666666 455556666666666666666653 444444466666666555
Q ss_pred CcCccCCCC
Q 002771 768 NQLEGPVPR 776 (882)
Q Consensus 768 N~l~g~iP~ 776 (882)
|.+. +||.
T Consensus 133 na~~-eid~ 140 (177)
T KOG4579|consen 133 NARA-EIDV 140 (177)
T ss_pred Cccc-cCcH
Confidence 5543 4443
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=1.3e-07 Score=93.64 Aligned_cols=85 Identities=25% Similarity=0.290 Sum_probs=42.0
Q ss_pred CCCCCCEEeCCCCCCCCC--CCccccCCCCCCEEECcCCCCCCCccccccCCCCCCEEEccCCcCCC-CCcccccCCCCC
Q 002771 135 QLRSLTLLNLSSSNFTGS--IPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTG-QIPSSVGELANL 211 (882)
Q Consensus 135 ~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L 211 (882)
.+++++.|||.+|.+++- +..-+.+||.|++|+|+.|++...+...-..+.+|+.|-|.+..+.- .....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 345566666666655531 22233456666666666665543322111334556666665555431 122334455555
Q ss_pred cEEeccCC
Q 002771 212 ATVYLYFN 219 (882)
Q Consensus 212 ~~L~L~~n 219 (882)
++|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 56655555
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=5.5e-08 Score=96.25 Aligned_cols=104 Identities=23% Similarity=0.209 Sum_probs=54.8
Q ss_pred CCcEEeccCceeeccCCc-cccC-CCcceEEcccCccCCcCchhhhccCCcCeEeccCcc-ccCc-CChhhhcCCCCcEE
Q 002771 423 SIQYLEMSNNSFSGQIPQ-CLVN-STVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNK-LEGP-LPPSLINCFSLHVI 498 (882)
Q Consensus 423 ~L~~L~Ls~n~l~~~~p~-~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L 498 (882)
.|++||||+..++..--. .+.. .+|+.|.+.++.+.+.+...++...+|+.|+++.+. ++.. ..--+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 455666665555421111 1111 556666666666666666666666677777766653 2211 11235667777777
Q ss_pred EccCCcCccccCccc-cC--CCccEEEccCC
Q 002771 499 DVGNNNLSGEIPQCF-GN--SALKVFDMRMN 526 (882)
Q Consensus 499 ~Ls~n~l~~~~p~~~-~~--~~L~~L~L~~n 526 (882)
+++.|.+....-... .. .+|+.|+++++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 777776654332211 11 45556665554
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.7e-08 Score=96.70 Aligned_cols=176 Identities=18% Similarity=0.140 Sum_probs=116.3
Q ss_pred CCCcEEeccCCcccccC-CccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCc-ccccccchhhcCCCCCCc
Q 002771 209 ANLATVYLYFNSLKGTI-PSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNK-LSGTVELYDFAKLKNLKW 286 (882)
Q Consensus 209 ~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~i~~~~l~~l~~L~~ 286 (882)
+.|+++||++..++..- -.-+..+.+|+.|.+.++++...+...+++-.+|+.|+++.+. ++..--..-+..++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35888888887775321 1224568889999999999988888888888999999998764 332222224678999999
Q ss_pred eeccccccCCCcccccc-ccccccCccccccccC----CCCChhhhcCCCccEEEcccccc-ccCCCchhhcccCCCccE
Q 002771 287 LVLSNNSLSLTTKLTVS-SSFLNLSRLGLSACKI----SKFPVILKTQLQLEWLDLSENQI-HGRVPGWMWDVGIHTLSY 360 (882)
Q Consensus 287 L~L~~n~~~~~~~~~~~-~~~~~L~~L~L~~~~l----~~ip~~l~~~~~L~~L~L~~n~i-~~~~~~~~~~~~~~~L~~ 360 (882)
|++++|........... .--++|+.|+++++.- ..+......+++|.+|||++|.. +......+. .++.|++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~--kf~~L~~ 342 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF--KFNYLQH 342 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH--hcchhee
Confidence 99999987422211111 2346788999998852 33444556788999999998753 333333444 6778888
Q ss_pred EeCCCCccCC----CCCCCCCCCceEEccC
Q 002771 361 LDLSQNFLRS----IKRLPWKNLKNLYLDS 386 (882)
Q Consensus 361 L~Ls~n~l~~----i~~~~~~~L~~L~l~~ 386 (882)
|.++.|..-. +.....+.|.+|++.+
T Consensus 343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred eehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 8888774321 2224445555555443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.05 E-value=9.1e-07 Score=86.64 Aligned_cols=212 Identities=20% Similarity=0.152 Sum_probs=96.7
Q ss_pred ccCCCCCcEEeccCceeeccCCcccc----C-CCcceEEcccCccCC---cCc-------hhhhccCCcCeEeccCcccc
Q 002771 418 FCNLSSIQYLEMSNNSFSGQIPQCLV----N-STVKFLDLRMNNFQG---IIP-------QTYAKDCNLTFLKLNGNKLE 482 (882)
Q Consensus 418 ~~~l~~L~~L~Ls~n~l~~~~p~~~~----~-~~L~~L~L~~n~l~~---~~~-------~~~~~l~~L~~L~L~~n~l~ 482 (882)
+..+..+..++||+|.+..+-...+. . .+|+..+++.-.... .++ ..+.+|+.|+.++|++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34467788888888888754443332 2 556666555432211 111 23345556666666666555
Q ss_pred CcCChhh----hcCCCCcEEEccCCcCccccCccccCCCccEEEccCCcCccccchhhccCCCCCEEeCCCCccCCCCC-
Q 002771 483 GPLPPSL----INCFSLHVIDVGNNNLSGEIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLS- 557 (882)
Q Consensus 483 ~~~~~~l----~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 557 (882)
...|+.+ +.-+.|..|.+++|.+.-.....++ ..|..| ..| .-..+-|.|+......|++..-..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig-kal~~l--a~n-------KKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG-KALFHL--AYN-------KKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHH-HHHHHH--HHH-------hhhccCCCceEEEeccchhccCcHH
Confidence 5444332 3334555555555544211111111 000000 000 001123445555555555432111
Q ss_pred ---ccccCCCCCcEEECcCccCCCcc-----chhhhCCCCCcEEEccCccccccCC--CCCCCCCCCCCcEEECCCCcCc
Q 002771 558 ---PSLINCRYLEVLDIGNNHINDTF-----PYWLEILPELRVLILRSNRFWGPIG--NTKTRAPFSKLRILDLSHNQLT 627 (882)
Q Consensus 558 ---~~l~~l~~L~~L~Ls~N~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~l~~L~~L~Ls~N~l~ 627 (882)
..+..-..|+++.+..|.|.... -..+..+.+|+.|+|+.|-++-.-. ...+.+.++.|+.|.+.+|-++
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 11222345666666666553211 1122345566666666665532211 1112244556777777777776
Q ss_pred cCCChHHHhhhh
Q 002771 628 GVLPTRYLNNFR 639 (882)
Q Consensus 628 g~~p~~~~~~~~ 639 (882)
..-..+++..+.
T Consensus 256 ~~G~~~v~~~f~ 267 (388)
T COG5238 256 NEGVKSVLRRFN 267 (388)
T ss_pred cccHHHHHHHhh
Confidence 554444444433
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.96 E-value=2.5e-06 Score=83.60 Aligned_cols=187 Identities=23% Similarity=0.284 Sum_probs=95.2
Q ss_pred CCCCCEEECCCCCCCCCC---CcccccCCCCCCEEeCCCCCCCC----CCCc-------cccCCCCCCEEECcCCCCCCC
Q 002771 111 LPRLQKLNLGSNDFNYSK---ISSGFSQLRSLTLLNLSSSNFTG----SIPP-------SLGNLTQLVYLDLSNNSFIGE 176 (882)
Q Consensus 111 l~~L~~L~Ls~n~~~~~~---~~~~l~~l~~L~~L~Ls~n~l~~----~~p~-------~l~~l~~L~~L~Ls~n~~~~~ 176 (882)
+..+..++||+|.|.... +...+.+-++|+..++++- ++| .+|+ .+-+|++|+..+||.|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 445555555555554321 2233555566666666653 222 2222 345667777777777766544
Q ss_pred cc----ccccCCCCCCEEEccCCcCCCC----Ccc---------cccCCCCCcEEeccCCcccccCC----ccccCCCCC
Q 002771 177 IP----NMFTNQSKLSYLNFGGNQLTGQ----IPS---------SVGELANLATVYLYFNSLKGTIP----SRIFSLTSL 235 (882)
Q Consensus 177 ~p----~~~~~l~~L~~L~Ls~n~l~~~----~p~---------~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L 235 (882)
.| +.++.-+.|.+|.+++|.+... +.. -..+-+.|++..+..|++..-.. ..+..-..|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 44 2345666777777777765411 111 11233567777777776642111 112223467
Q ss_pred cEEEccCCCCCCCC-----chhhhcCCcCCeEecCCCcccccc---cchhhcCCCCCCceeccccccCCCc
Q 002771 236 KQVDFRHNQLSGSV-----PSSVYELVNLTRLDLSSNKLSGTV---ELYDFAKLKNLKWLVLSNNSLSLTT 298 (882)
Q Consensus 236 ~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~i---~~~~l~~l~~L~~L~L~~n~~~~~~ 298 (882)
+++.+..|.|.-.. -..+..+.+|+.||+..|.++-.- -...+..++.|+.|.+.+|-++..|
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G 258 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG 258 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence 77777777554211 012234566666777666654111 1112334455666666666554444
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=5.7e-06 Score=82.25 Aligned_cols=210 Identities=22% Similarity=0.237 Sum_probs=97.7
Q ss_pred cCCCCCCEEECcCCCCCCCcc-ccc-cCCCCCCEEEccCCcCCC--CCcccccCCCCCcEEeccCCcccccCCccccCCC
Q 002771 158 GNLTQLVYLDLSNNSFIGEIP-NMF-TNQSKLSYLNFGGNQLTG--QIPSSVGELANLATVYLYFNSLKGTIPSRIFSLT 233 (882)
Q Consensus 158 ~~l~~L~~L~Ls~n~~~~~~p-~~~-~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 233 (882)
....-++.|-+.++.|...-. ..| ..++.++.+||.+|.++. .+...+.+++.|+.|+++.|.+...+...-....
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 333344555555554432111 112 345667777777777762 2223345666777777777766533322112345
Q ss_pred CCcEEEccCCCCCCC-CchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceeccccccCCCccccccccccccCcc
Q 002771 234 SLKQVDFRHNQLSGS-VPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRL 312 (882)
Q Consensus 234 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L 312 (882)
+|++|-|.+..+.-. ....+..+|.+++|+++.|.+. .+++..+.++ ...+.++++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r---------------q~n~Dd~c~e--------~~s~~v~tl 178 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR---------------QLNLDDNCIE--------DWSTEVLTL 178 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh---------------hhcccccccc--------ccchhhhhh
Confidence 666666655544311 1122344555555555555332 1111111110 012233333
Q ss_pred ccccccCC---CCChhhhcCCCccEEEccccccccCCCchhhcccCCCccEEeCCCCccCCCCC----CCCCCCceEEcc
Q 002771 313 GLSACKIS---KFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRSIKR----LPWKNLKNLYLD 385 (882)
Q Consensus 313 ~L~~~~l~---~ip~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~i~~----~~~~~L~~L~l~ 385 (882)
....|... .+-..-.-.+++..+-+..|.+.......- ...+|.+.-|+|+.+++..... ..|+.|..|.+.
T Consensus 179 h~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~-se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~ 257 (418)
T KOG2982|consen 179 HQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG-SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVS 257 (418)
T ss_pred hcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc-CCCCCcchhhhhcccccccHHHHHHHcCCchhheeecc
Confidence 33333211 111111234456666666665543222111 1145556667777776665322 456777777777
Q ss_pred CcccCC
Q 002771 386 SNLLRG 391 (882)
Q Consensus 386 ~n~l~~ 391 (882)
++++..
T Consensus 258 ~~Pl~d 263 (418)
T KOG2982|consen 258 ENPLSD 263 (418)
T ss_pred CCcccc
Confidence 766654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=1.9e-05 Score=56.30 Aligned_cols=36 Identities=42% Similarity=0.740 Sum_probs=15.7
Q ss_pred CCCEEeCCCCccCccCChhhhccCCCCEEeCCCCccc
Q 002771 711 SLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLV 747 (882)
Q Consensus 711 ~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~ 747 (882)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444444
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.75 E-value=3.6e-06 Score=74.01 Aligned_cols=84 Identities=24% Similarity=0.338 Sum_probs=42.1
Q ss_pred ccEeeCCCCcccccchhh---hcCCCCCCEEeCCCCccCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCEEe
Q 002771 688 FTTIDLSSNRFQGGIPAI---VGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLN 764 (882)
Q Consensus 688 L~~LdLs~N~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 764 (882)
+..+|||++.+. .++.. +.....|+..+|++|.+....+..-...+.++.|+|++|+|+ .+|..++.++.|+.+|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 344555555553 33332 223334444566666665332222223335556666666665 3555566666666666
Q ss_pred CcCCcCccC
Q 002771 765 LSHNQLEGP 773 (882)
Q Consensus 765 ls~N~l~g~ 773 (882)
+++|+|...
T Consensus 107 l~~N~l~~~ 115 (177)
T KOG4579|consen 107 LRFNPLNAE 115 (177)
T ss_pred cccCccccc
Confidence 666665543
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=2.9e-05 Score=55.44 Aligned_cols=38 Identities=29% Similarity=0.531 Sum_probs=32.7
Q ss_pred ccccEeeCCCCcccccchhhhcCCCCCCEEeCCCCccCc
Q 002771 686 TIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTG 724 (882)
Q Consensus 686 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (882)
++|++|++++|+|+ .+|+.+++|++|+.|++++|+|+.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 36899999999999 677789999999999999999994
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=0.00013 Score=78.43 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=51.7
Q ss_pred hccCCCCCEEeCCCCccCCCCCccccCCCCCcEEECcCccCCCccchhhhCCCCCcEEEccCccccccCCCCCCCCCCCC
Q 002771 536 FAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSK 615 (882)
Q Consensus 536 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 615 (882)
+..+..+++|++++|.++. +| .-..+|+.|.+++|.--..+|..+ .++|++|++++|.....+ ..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL--------P~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL--------PES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc--------ccc
Confidence 4456889999999998774 34 123569999998865545566544 257889999888422222 245
Q ss_pred CcEEECCCCcC
Q 002771 616 LRILDLSHNQL 626 (882)
Q Consensus 616 L~~L~Ls~N~l 626 (882)
|+.|+++++..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 77888776654
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=1.8e-05 Score=92.44 Aligned_cols=149 Identities=19% Similarity=0.275 Sum_probs=81.0
Q ss_pred CCCCEEeCCCCCCC-CCCCcccc-CCCCCCEEECcCCCCCC-CccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcE
Q 002771 137 RSLTLLNLSSSNFT-GSIPPSLG-NLTQLVYLDLSNNSFIG-EIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLAT 213 (882)
Q Consensus 137 ~~L~~L~Ls~n~l~-~~~p~~l~-~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 213 (882)
.+|++||+++...- ..-|..++ .+|.|+.|.+++-.+.. ..-....++++|..||+|+++++.. ..+++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46777777765422 22233344 36777777777655432 2234455677777777777777633 55677777777
Q ss_pred EeccCCcccc-cCCccccCCCCCcEEEccCCCCCCCC--c----hhhhcCCcCCeEecCCCcccccccchhhcCCCCCCc
Q 002771 214 VYLYFNSLKG-TIPSRIFSLTSLKQVDFRHNQLSGSV--P----SSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKW 286 (882)
Q Consensus 214 L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~--~----~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~ 286 (882)
|.+.+=.+.. ..-..++++++|++||+|........ . +.-..+|+|+.||.|+..+.+.+-..-+...++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 7776654432 11234666777777777765443221 0 111235566666666655544333322333344433
Q ss_pred e
Q 002771 287 L 287 (882)
Q Consensus 287 L 287 (882)
+
T Consensus 280 i 280 (699)
T KOG3665|consen 280 I 280 (699)
T ss_pred h
Confidence 3
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.56 E-value=0.00025 Score=76.31 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=9.1
Q ss_pred cCCCCCCceecccccc
Q 002771 279 AKLKNLKWLVLSNNSL 294 (882)
Q Consensus 279 ~~l~~L~~L~L~~n~~ 294 (882)
..+.+++.|++++|.+
T Consensus 49 ~~~~~l~~L~Is~c~L 64 (426)
T PRK15386 49 EEARASGRLYIKDCDI 64 (426)
T ss_pred HHhcCCCEEEeCCCCC
Confidence 3345666666666654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.39 E-value=0.00026 Score=67.04 Aligned_cols=84 Identities=23% Similarity=0.265 Sum_probs=42.4
Q ss_pred CCcEEeccCCcccccCCccccCCCCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceec
Q 002771 210 NLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVL 289 (882)
Q Consensus 210 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L 289 (882)
+...+||++|.+... ..|..++.|.+|.+.+|+|+.+.|.--.-+++|..|.|.+|.+...-+...+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344455555544311 234445555555555555554444433444555556666655542222224555666666666
Q ss_pred cccccC
Q 002771 290 SNNSLS 295 (882)
Q Consensus 290 ~~n~~~ 295 (882)
-+|+.+
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 666553
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.36 E-value=0.00023 Score=67.44 Aligned_cols=104 Identities=25% Similarity=0.259 Sum_probs=73.7
Q ss_pred CCCcEEEccCCCCCCCCchhhhcCCcCCeEecCCCcccccccchhhcCCCCCCceeccccccCCCccccccccccccCcc
Q 002771 233 TSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRL 312 (882)
Q Consensus 233 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L 312 (882)
.+...+||++|.+... ..|..++.|..|.+.+|+|+ .|...--..+++|+.|.+.+|.+...++......++.|+.|
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4667889999988633 55777889999999999998 45542344567899999999998777777777777777777
Q ss_pred ccccccCCCCCh----hhhcCCCccEEEccc
Q 002771 313 GLSACKISKFPV----ILKTQLQLEWLDLSE 339 (882)
Q Consensus 313 ~L~~~~l~~ip~----~l~~~~~L~~L~L~~ 339 (882)
.+-+|..+.-+. .+..+++|+.||++.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 777776654432 234455566666554
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.22 E-value=8.9e-05 Score=86.79 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=73.6
Q ss_pred CCCCEEECCCCCCCCCCCccccc-CCCCCCEEeCCCCCCCCC-CCccccCCCCCCEEECcCCCCCCCccccccCCCCCCE
Q 002771 112 PRLQKLNLGSNDFNYSKISSGFS-QLRSLTLLNLSSSNFTGS-IPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSY 189 (882)
Q Consensus 112 ~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 189 (882)
.+|++||+++........|..++ .+|+|+.|.+++-.+... .-.-..++++|..||+|+..++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666665443222333333 466666666666544322 111224566666777776666533 45666666666
Q ss_pred EEccCCcCCC-CCcccccCCCCCcEEeccCCcccccC--C----ccccCCCCCcEEEccCCCCCCCC
Q 002771 190 LNFGGNQLTG-QIPSSVGELANLATVYLYFNSLKGTI--P----SRIFSLTSLKQVDFRHNQLSGSV 249 (882)
Q Consensus 190 L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~ 249 (882)
|.+.+=.+.. ..-..+.+|++|++||+|........ . +.-..+++|+.||.+++.+....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 6666554442 11124556677777777765433211 0 11123778888888877666443
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.11 E-value=0.0014 Score=60.17 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=19.8
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCCCEEEc
Q 002771 133 FSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNF 192 (882)
Q Consensus 133 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 192 (882)
|.++++|+.+.+.. .+...-...|.++++|+.+++..+ +.......|.++++|+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 44444555555443 233233334444444555544443 33222333444444444444
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.07 E-value=0.0013 Score=60.41 Aligned_cols=121 Identities=20% Similarity=0.290 Sum_probs=37.6
Q ss_pred hhhccCCcCeEeccCccccCcCChhhhcCCCCcEEEccCCcCccccCccccC-CCccEEEccCCcCccccchhhccCCCC
Q 002771 464 TYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGN-SALKVFDMRMNRFNGSIPQMFAKSCDL 542 (882)
Q Consensus 464 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L 542 (882)
.|.++++|+.+.+.. .+.......|.++++|+.+++.++ +.......|.. .+++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444455555442 233333344444444555555442 33222223333 2444444432 2222223344444455
Q ss_pred CEEeCCCCccCCCCCccccCCCCCcEEECcCccCCCccchhhhCCCCC
Q 002771 543 RSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPEL 590 (882)
Q Consensus 543 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 590 (882)
+.+++..+ +.......|.++ .|+.+.+.. .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55554433 322222334444 455554443 3333333344444333
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.07 E-value=1.9e-05 Score=82.46 Aligned_cols=132 Identities=20% Similarity=0.168 Sum_probs=64.9
Q ss_pred cCCcCeEeccCccccCcCC-hh-hhcCCCCcEEEccCCc-CccccCccccC--CCccEEEccCCcCc--cccchhhccCC
Q 002771 468 DCNLTFLKLNGNKLEGPLP-PS-LINCFSLHVIDVGNNN-LSGEIPQCFGN--SALKVFDMRMNRFN--GSIPQMFAKSC 540 (882)
Q Consensus 468 l~~L~~L~L~~n~l~~~~~-~~-l~~l~~L~~L~Ls~n~-l~~~~p~~~~~--~~L~~L~L~~n~l~--~~~~~~~~~l~ 540 (882)
+.+|+.|+.+++...+..+ .. -.++.+|++|.++.|+ ++...-..++. ..|+.+++..+... +.+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4566666666654432211 11 2345667777766665 22221112222 55666666655432 12223334566
Q ss_pred CCCEEeCCCCccCCCC-----CccccCCCCCcEEECcCccCC-CccchhhhCCCCCcEEEccCcc
Q 002771 541 DLRSLNLNGNQLEGPL-----SPSLINCRYLEVLDIGNNHIN-DTFPYWLEILPELRVLILRSNR 599 (882)
Q Consensus 541 ~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~L~~n~ 599 (882)
.|+.|.++++...... ...-..+..|+.+.|++++.. +..-+.+..+++|+.+++.+++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 6777777766543211 111233456666777766542 3333445556666666666654
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.05 E-value=5.2e-05 Score=79.30 Aligned_cols=230 Identities=18% Similarity=0.126 Sum_probs=99.6
Q ss_pred CCcCCeEecCCC-cccccccchhhcCCCCCCceecccccc-CCCccccccccccccCccccccccCCCCC---hhhhcCC
Q 002771 256 LVNLTRLDLSSN-KLSGTVELYDFAKLKNLKWLVLSNNSL-SLTTKLTVSSSFLNLSRLGLSACKISKFP---VILKTQL 330 (882)
Q Consensus 256 l~~L~~L~L~~n-~l~~~i~~~~l~~l~~L~~L~L~~n~~-~~~~~~~~~~~~~~L~~L~L~~~~l~~ip---~~l~~~~ 330 (882)
+++|++|++..+ .++...-.+--..+++|++++++++.- +..+..........++.+.+.+|.-.... ..-..+.
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~ 268 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL 268 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence 455556655553 233221111234566777777777643 21222233334555666655655421111 1112334
Q ss_pred CccEEEccccccccCCCchhhcccCCCccEEeCCCCccCC-CC--C--CCCCCCceEEccCcccCCcCCCCCCCCcEEEc
Q 002771 331 QLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRS-IK--R--LPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSI 405 (882)
Q Consensus 331 ~L~~L~L~~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-i~--~--~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 405 (882)
.+..+++..|.......-|.....+..|+.++.+++.-.+ .. . ....+|+.+.++.++.-+.
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd------------- 335 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD------------- 335 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh-------------
Confidence 4555565555332222222222345666777766654322 11 1 2335566665555542110
Q ss_pred ccccccccCCCcccCCCCCcEEeccCceeecc--CCccccC-CCcceEEcccCccCCcC-----chhhhccCCcCeEecc
Q 002771 406 SNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQ--IPQCLVN-STVKFLDLRMNNFQGII-----PQTYAKDCNLTFLKLN 477 (882)
Q Consensus 406 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~-~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~ 477 (882)
..++ .-=.+++.|+.+++..+..... +...... +.|+.+.+++|...... ...-..+..|+.+.|+
T Consensus 336 --~~ft----~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 336 --RGFT----MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD 409 (483)
T ss_pred --hhhh----hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec
Confidence 0000 0012234444444444432211 1111111 44455555544322111 1111234566777777
Q ss_pred CccccC-cCChhhhcCCCCcEEEccCCc
Q 002771 478 GNKLEG-PLPPSLINCFSLHVIDVGNNN 504 (882)
Q Consensus 478 ~n~l~~-~~~~~l~~l~~L~~L~Ls~n~ 504 (882)
++.... ..-..+..+++|+.+++-+++
T Consensus 410 n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 410 NCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CCCCchHHHHHHHhhCcccceeeeechh
Confidence 775543 233456667777777777665
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.59 E-value=0.0014 Score=65.09 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=30.0
Q ss_pred CCCCCcEEeccCCcccccCCccccCCCCCcEEEccCC--CCCCCCchhhhcCCcCCeEecCCCccc
Q 002771 207 ELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHN--QLSGSVPSSVYELVNLTRLDLSSNKLS 270 (882)
Q Consensus 207 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~ 270 (882)
.+..|+.+++.+..++.. ..+-.+++|++|.++.| .+.+.++.....+++|+++++++|++.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344555555555444422 23444556666666666 444333333344455555555555543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00018 Score=71.28 Aligned_cols=88 Identities=26% Similarity=0.254 Sum_probs=49.3
Q ss_pred CCCEEeCCCCccCCCCCccccCCCCCcEEECcCccCCCccchhhhCCCCCcEEEccCccccccCCCCCCCCCCCCCcEEE
Q 002771 541 DLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILD 620 (882)
Q Consensus 541 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 620 (882)
+.+.|++.+|.++.+ .....++.|++|.|+-|+|+..-| +..|++|++|+|+.|.|...- ...-..++++|+.|-
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sld-EL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLD-ELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHH-HHHHHhcCchhhhHh
Confidence 445555555555533 234456666666666666655544 566666666666666653221 111124566677777
Q ss_pred CCCCcCccCCChH
Q 002771 621 LSHNQLTGVLPTR 633 (882)
Q Consensus 621 Ls~N~l~g~~p~~ 633 (882)
|..|+-.|.-+..
T Consensus 95 L~ENPCc~~ag~n 107 (388)
T KOG2123|consen 95 LDENPCCGEAGQN 107 (388)
T ss_pred hccCCcccccchh
Confidence 7777766665544
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.18 E-value=0.0035 Score=62.32 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=48.6
Q ss_pred CCCCCEEeCCCCccCCCCCccccCCCCCcEEECcCc--cCCCccchhhhCCCCCcEEEccCccccccCCCCCCCCCCCCC
Q 002771 539 SCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNN--HINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKL 616 (882)
Q Consensus 539 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 616 (882)
+..|+.|.+.+..++.. ..|-.+++|+.|.++.| ++++.++.....+|+|++|++++|++.. +........+.+|
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcch
Confidence 33444444555444422 23444566666666666 5555555445555677777777776643 1111122446678
Q ss_pred cEEECCCCcCcc
Q 002771 617 RILDLSHNQLTG 628 (882)
Q Consensus 617 ~~L~Ls~N~l~g 628 (882)
..||+.+|..+.
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 888888887664
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.76 E-value=0.0017 Score=74.79 Aligned_cols=17 Identities=24% Similarity=0.036 Sum_probs=8.8
Q ss_pred hhcCCCCCCceeccccc
Q 002771 277 DFAKLKNLKWLVLSNNS 293 (882)
Q Consensus 277 ~l~~l~~L~~L~L~~n~ 293 (882)
....+++++.+.+..+.
T Consensus 357 ~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCG 373 (482)
T ss_pred HHhcCCCcchhhhhhhh
Confidence 34455555555555554
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.0012 Score=65.49 Aligned_cols=81 Identities=28% Similarity=0.357 Sum_probs=50.9
Q ss_pred ccccCccccccccCCCCChhhhcCCCccEEEccccccccCCCchhhcccCCCccEEeCCCCccCCCCC----CCCCCCce
Q 002771 306 FLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRSIKR----LPWKNLKN 381 (882)
Q Consensus 306 ~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~i~~----~~~~~L~~ 381 (882)
+.+.++|++.+|++..|. ....++.|+.|.|+-|.|+..-|-. .|+.|++|.|..|.|..+.. ..+++|+.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~----rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQ----RCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHH----HHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 445666667777665554 2456777888888888877555433 66777777777777776654 34455555
Q ss_pred EEccCcccCC
Q 002771 382 LYLDSNLLRG 391 (882)
Q Consensus 382 L~l~~n~l~~ 391 (882)
|.|..|.-.|
T Consensus 93 LWL~ENPCc~ 102 (388)
T KOG2123|consen 93 LWLDENPCCG 102 (388)
T ss_pred HhhccCCccc
Confidence 5555554443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.36 E-value=0.0063 Score=36.03 Aligned_cols=12 Identities=58% Similarity=0.697 Sum_probs=5.4
Q ss_pred CCEEeCCCCccC
Q 002771 712 LKGLNISHNNLT 723 (882)
Q Consensus 712 L~~L~Ls~N~l~ 723 (882)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.30 E-value=0.0068 Score=35.87 Aligned_cols=19 Identities=53% Similarity=0.753 Sum_probs=10.1
Q ss_pred CCEEeCCCCcccccCCcccc
Q 002771 736 LESLDLSSNKLVGQIPMQMA 755 (882)
Q Consensus 736 L~~L~Ls~N~l~~~ip~~l~ 755 (882)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554444
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.48 E-value=0.014 Score=67.26 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=18.2
Q ss_pred CCCCcEEEccccccccc--CCCcccCCCCCcEEeccC
Q 002771 397 PPLMTIFSISNNYLTGE--IPSSFCNLSSIQYLEMSN 431 (882)
Q Consensus 397 ~~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~Ls~ 431 (882)
.+.++.+.+..+.-... .-.....++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45566666665532222 223344566666666665
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.43 E-value=0.0015 Score=73.40 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=20.2
Q ss_pred CcEEEcccccccccCC----CcccCCCCCcEEeccCceee
Q 002771 400 MTIFSISNNYLTGEIP----SSFCNLSSIQYLEMSNNSFS 435 (882)
Q Consensus 400 L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~ 435 (882)
+..+++.+|.+..... ..+...+.|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 5666666666654322 23344556666666666655
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.80 E-value=0.0013 Score=73.68 Aligned_cols=60 Identities=33% Similarity=0.355 Sum_probs=30.4
Q ss_pred CCEEeCCCCccCCC----CCccccCC-CCCcEEECcCccCCCcc----chhhhCCCCCcEEEccCcccc
Q 002771 542 LRSLNLNGNQLEGP----LSPSLINC-RYLEVLDIGNNHINDTF----PYWLEILPELRVLILRSNRFW 601 (882)
Q Consensus 542 L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~n~l~ 601 (882)
+..|++..|.+... ..+.+..+ ..+++++++.|.+++.. .+.+..++.++++.++.|.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44455555554422 12233334 45566666666665433 233445556666666666653
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.53 E-value=0.0083 Score=58.21 Aligned_cols=83 Identities=24% Similarity=0.231 Sum_probs=38.5
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCEEECcCCCCCCCccccccCCCCCCEEEccCCcCCCCCcccccCCCCCcEE
Q 002771 135 QLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGELANLATV 214 (882)
Q Consensus 135 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 214 (882)
.++..+.||++.|++. .+-..|+.++.|+.||++.|.+. ..|..++.+..++.+++..|..+ ..|.+++.++.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3444444444444443 12223444445555555555443 34444444444555555444444 344444444444444
Q ss_pred eccCCc
Q 002771 215 YLYFNS 220 (882)
Q Consensus 215 ~L~~n~ 220 (882)
++..|.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 444444
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.39 E-value=0.23 Score=27.21 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=3.4
Q ss_pred CCEEeCCCCcc
Q 002771 712 LKGLNISHNNL 722 (882)
Q Consensus 712 L~~L~Ls~N~l 722 (882)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.57 E-value=0.019 Score=55.80 Aligned_cols=83 Identities=20% Similarity=0.182 Sum_probs=64.7
Q ss_pred ccccEeeCCCCcccccchhhhcCCCCCCEEeCCCCccCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCEEeC
Q 002771 686 TIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNL 765 (882)
Q Consensus 686 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l 765 (882)
...+.||++.|++- ..-..|.-++.|..||++.|++. -.|..++++..+..+++..|.++ ..|.++..++.+++++.
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 44677888888875 33445666777888888888887 67788888888888888888886 57888888888888888
Q ss_pred cCCcCc
Q 002771 766 SHNQLE 771 (882)
Q Consensus 766 s~N~l~ 771 (882)
-.|+|.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 888765
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.83 E-value=0.55 Score=28.93 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=5.9
Q ss_pred CCCEEeCCCCccC
Q 002771 711 SLKGLNISHNNLT 723 (882)
Q Consensus 711 ~L~~L~Ls~N~l~ 723 (882)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.83 E-value=0.55 Score=28.93 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=5.9
Q ss_pred CCCEEeCCCCccC
Q 002771 711 SLKGLNISHNNLT 723 (882)
Q Consensus 711 ~L~~L~Ls~N~l~ 723 (882)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.31 E-value=0.56 Score=28.91 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=11.2
Q ss_pred cCCCCEEeCCCCccccc
Q 002771 733 LTELESLDLSSNKLVGQ 749 (882)
Q Consensus 733 L~~L~~L~Ls~N~l~~~ 749 (882)
|++|++|+|++|+|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 45677777777777643
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.31 E-value=0.56 Score=28.91 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=11.2
Q ss_pred cCCCCEEeCCCCccccc
Q 002771 733 LTELESLDLSSNKLVGQ 749 (882)
Q Consensus 733 L~~L~~L~Ls~N~l~~~ 749 (882)
|++|++|+|++|+|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 45677777777777643
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.08 E-value=0.27 Score=29.67 Aligned_cols=12 Identities=42% Similarity=0.731 Sum_probs=3.9
Q ss_pred CCEEeCCCCccC
Q 002771 712 LKGLNISHNNLT 723 (882)
Q Consensus 712 L~~L~Ls~N~l~ 723 (882)
|++|+|++|+|+
T Consensus 4 L~~L~l~~n~i~ 15 (24)
T PF13516_consen 4 LETLDLSNNQIT 15 (24)
T ss_dssp -SEEE-TSSBEH
T ss_pred CCEEEccCCcCC
Confidence 333344443333
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.31 E-value=0.39 Score=46.24 Aligned_cols=82 Identities=20% Similarity=0.090 Sum_probs=53.6
Q ss_pred CCccEEEccCCcCccccchhhccCCCCCEEeCCCCccCCCCC-cccc-CCCCCcEEECcCc-cCCCccchhhhCCCCCcE
Q 002771 516 SALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLS-PSLI-NCRYLEVLDIGNN-HINDTFPYWLEILPELRV 592 (882)
Q Consensus 516 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~-~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~ 592 (882)
..++.+|-++..|..+--+-+.+++.++.|.+.+|.-.+... ..++ -.++|+.|++++| +|++..-.++..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 456777777777766665667777777778777776432210 0011 3478888888876 467666677777777777
Q ss_pred EEccC
Q 002771 593 LILRS 597 (882)
Q Consensus 593 L~L~~ 597 (882)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77664
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.39 E-value=0.29 Score=47.06 Aligned_cols=35 Identities=9% Similarity=-0.054 Sum_probs=15.9
Q ss_pred CCcceEEcccCccCCcCchhhhccCCcCeEeccCc
Q 002771 445 STVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGN 479 (882)
Q Consensus 445 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 479 (882)
..++.+|-++..|..+.-+.+.+++.++.|.+.+|
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 34445555555544444444444444444444443
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=79.67 E-value=7.9 Score=42.40 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=27.0
Q ss_pred ccEeeCCCCcccccchh---hhcCCCCCCEEeCCCCccCc----cCChhhhccCCCCEEeCCCCc
Q 002771 688 FTTIDLSSNRFQGGIPA---IVGKLNSLKGLNISHNNLTG----GIPSSLANLTELESLDLSSNK 745 (882)
Q Consensus 688 L~~LdLs~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~----~ip~~l~~L~~L~~L~Ls~N~ 745 (882)
++.+.++.|.+....-. ....-+.+..|++++|.-.. .+|..+..-..++....+.|.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 45566666665532222 22333456666666665431 234444433444444444443
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=72.17 E-value=11 Score=41.36 Aligned_cols=61 Identities=18% Similarity=0.053 Sum_probs=31.1
Q ss_pred CcEEECcCccCCCccch---hhhCCCCCcEEEccCccccccCCCC--CCCCCCCCCcEEECCCCcC
Q 002771 566 LEVLDIGNNHINDTFPY---WLEILPELRVLILRSNRFWGPIGNT--KTRAPFSKLRILDLSHNQL 626 (882)
Q Consensus 566 L~~L~Ls~N~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~Ls~N~l 626 (882)
+..+.++.|++...... .+..-+.+..|++++|.....-... .+...-..++.+..+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 55666777766543322 2345567788888887653221111 1112223455566665544
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.24 E-value=3.6 Score=25.42 Aligned_cols=15 Identities=67% Similarity=0.853 Sum_probs=9.8
Q ss_pred cCCCCEEeCCCCccc
Q 002771 733 LTELESLDLSSNKLV 747 (882)
Q Consensus 733 L~~L~~L~Ls~N~l~ 747 (882)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356677777777664
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=60.01 E-value=6.1 Score=24.36 Aligned_cols=12 Identities=67% Similarity=0.880 Sum_probs=5.9
Q ss_pred CCEEeCCCCccC
Q 002771 712 LKGLNISHNNLT 723 (882)
Q Consensus 712 L~~L~Ls~N~l~ 723 (882)
|+.|++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444555555544
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=59.47 E-value=7.2 Score=24.52 Aligned_cols=14 Identities=57% Similarity=0.676 Sum_probs=8.1
Q ss_pred CCCCEEeCCCCccc
Q 002771 734 TELESLDLSSNKLV 747 (882)
Q Consensus 734 ~~L~~L~Ls~N~l~ 747 (882)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666654
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.81 E-value=7.2 Score=43.64 Aligned_cols=36 Identities=36% Similarity=0.405 Sum_probs=17.1
Q ss_pred CCCccEEeCCCC--ccCC---CCCCCCCCCceEEccCcccC
Q 002771 355 IHTLSYLDLSQN--FLRS---IKRLPWKNLKNLYLDSNLLR 390 (882)
Q Consensus 355 ~~~L~~L~Ls~n--~l~~---i~~~~~~~L~~L~l~~n~l~ 390 (882)
.|.|..|+|++| .+.. ++......|++|.+.+|++.
T Consensus 243 apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 243 APKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 445555555555 2222 22233444555555555554
No 92
>PF15179 Myc_target_1: Myc target protein 1
Probab=50.08 E-value=11 Score=35.48 Aligned_cols=24 Identities=25% Similarity=0.648 Sum_probs=14.5
Q ss_pred ceeeeeehhhhhhhHhHHHHHHHh
Q 002771 829 WKFAKMGYASGLVIGLSIAYMVFA 852 (882)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~ 852 (882)
|.-+.+++-+.+++|++++.++|.
T Consensus 18 ~~~lIlaF~vSm~iGLviG~li~~ 41 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIGALIWA 41 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666677666666654
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.06 E-value=10 Score=42.50 Aligned_cols=45 Identities=24% Similarity=0.077 Sum_probs=25.1
Q ss_pred hhcCCCccEEEccccccccCCCchhhcccCCCccEEeCCCCccCC
Q 002771 326 LKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRS 370 (882)
Q Consensus 326 l~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 370 (882)
-...++|..|+|++|...-....+++..+...|++|.+.+|.+..
T Consensus 240 sq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 240 SQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred HHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 344556777777777332222333333355667777777776654
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=31.73 E-value=27 Score=47.27 Aligned_cols=33 Identities=33% Similarity=0.377 Sum_probs=25.3
Q ss_pred eCCCCccCccCChhhhccCCCCEEeCCCCcccc
Q 002771 716 NISHNNLTGGIPSSLANLTELESLDLSSNKLVG 748 (882)
Q Consensus 716 ~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~ 748 (882)
||++|+|+...+..|..|++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 577888887777777778888888888887654
No 95
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.33 E-value=44 Score=29.81 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=4.6
Q ss_pred ehhhhhhhHhH
Q 002771 835 GYASGLVIGLS 845 (882)
Q Consensus 835 ~~~~~~~~~~~ 845 (882)
++++|+++|++
T Consensus 68 ~Ii~gv~aGvI 78 (122)
T PF01102_consen 68 GIIFGVMAGVI 78 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred ehhHHHHHHHH
Confidence 34444444443
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.72 E-value=28 Score=31.08 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=13.9
Q ss_pred eeehhhhhhhHhHHHHHHHh
Q 002771 833 KMGYASGLVIGLSIAYMVFA 852 (882)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~ 852 (882)
..+..+++++|++++++..+
T Consensus 62 s~~~i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGII 81 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHH
T ss_pred cccceeehhHHHHHHHHHHH
Confidence 34667788888888877655
No 97
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=24.74 E-value=34 Score=24.24 Aligned_cols=15 Identities=7% Similarity=0.105 Sum_probs=9.2
Q ss_pred hhhhHHHHHHHHHhhee
Q 002771 854 GRPWWFVKMIEEKQATK 870 (882)
Q Consensus 854 ~~~~~~~~~~~~~~~~~ 870 (882)
++...|+|.| +|+++
T Consensus 20 ~hmkrycraf--rqdrd 34 (54)
T PF13260_consen 20 CHMKRYCRAF--RQDRD 34 (54)
T ss_pred HHHHHHHHHH--hhhHH
Confidence 4556688888 44443
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.78 E-value=46 Score=45.24 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=29.9
Q ss_pred eCCCCcccccchhhhcCCCCCCEEeCCCCccCc
Q 002771 692 DLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTG 724 (882)
Q Consensus 692 dLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (882)
||++|+|+...+..|..+.+|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 799999998778889999999999999998873
No 99
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=23.46 E-value=56 Score=19.89 Aligned_cols=11 Identities=45% Similarity=0.413 Sum_probs=5.8
Q ss_pred CCCCEEECcCC
Q 002771 161 TQLVYLDLSNN 171 (882)
Q Consensus 161 ~~L~~L~Ls~n 171 (882)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555555
No 100
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=21.85 E-value=26 Score=26.92 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=0.0
Q ss_pred eehhhhhhhHhHHHHHH
Q 002771 834 MGYASGLVIGLSIAYMV 850 (882)
Q Consensus 834 ~~~~~~~~~~~~~~~~~ 850 (882)
.|++.|.++|+++++++
T Consensus 12 aavIaG~Vvgll~ailL 28 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILL 28 (64)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555444443
Done!