Query 002771
Match_columns 882
No_of_seqs 599 out of 5312
Neff 9.8
Searched_HMMs 29240
Date Tue Mar 26 17:20:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002771.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1487-1491//hhsearch_pdb/002771hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 746.0 49.8 709 22-808 3-753 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 575.5 43.4 644 112-792 50-715 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 479.2 51.7 590 112-784 25-635 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 476.2 47.5 591 116-799 8-627 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 461.3 42.6 562 111-809 23-594 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 441.5 45.2 526 112-776 33-565 (606)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 439.3 41.7 528 129-798 27-564 (606)
8 3j0a_A TOLL-like receptor 5; m 1.0 1 1 437.8 40.0 540 116-800 8-566 (844)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 431.6 39.7 521 112-777 32-564 (606)
10 4eco_A Uncharacterized protein 1.0 1 1 424.3 24.1 521 27-773 26-602 (636)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=746.03 Aligned_cols=709 Identities=31% Similarity=0.433 Sum_probs=469.7
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCC
Q ss_conf 12788897999999999544157778998757885566898899988999999989604169999399998799978522
Q 002771 22 QCSAKLCSQEQSSALLQFKQLFSFAKTSSSQCDGYQQSYPKMKYWKEDADCCSSWDGVTCDMVTGQVIGLDLSCSWLHGS 101 (882)
Q Consensus 22 ~~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~~w~gv~c~~~~~~v~~l~l~~~~l~g~ 101 (882)
.+++..+.++|++||++||+++.++. .+++|+.+++|| +|+||+|+ .++|+.++++++.+.|.
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~~~~--------------~l~~W~~~~~~C-~w~gv~C~--~~~v~~L~L~~~~l~g~ 65 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLPDKN--------------LLPDWSSNKNPC-TFDGVTCR--DDKVTSIDLSSKPLNVG 65 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCSCTT--------------SSTTCCTTSCGG-GSTTEEEE--TTEEEEEECTTSCCCEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCC--------------CCCCCCCCCCCC-CCCCEEEC--CCCEEEEECCCCCCCCC
T ss_conf 67656687899999999996678962--------------146878999876-88413878--99278987789986775
Q ss_pred ---CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCC
Q ss_conf ---479876558999998878999999998761266999999985888989877971--365999898997758989877
Q 002771 102 ---ISSNSSLFFLPRLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPP--SLGNLTQLVYLDLSNNSFIGE 176 (882)
Q Consensus 102 ---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~~~~ 176 (882)
+++ ++..+++|+.++++.+.+.. ++..+..+++|++|++++|.+.+.+|. .++++++|++|++++|.+.+.
T Consensus 66 ~~~l~~--~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 141 (768)
T 3rgz_A 66 FSAVSS--SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141 (768)
T ss_dssp HHHHHH--HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC
T ss_pred CCCCCH--HHHCCCCCCCCCCCCCCCCC--CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 576696--57316802246786888678--70332457889989898985787078967872788999898968826774
Q ss_pred CCCCC-CCCCCCCEEECCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 53003-69999999981387688879500---018998848866478664448833459999768982388898878511
Q 002771 177 IPNMF-TNQSKLSYLNFGGNQLTGQIPSS---VGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSS 252 (882)
Q Consensus 177 ~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 252 (882)
.|..+ .++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+.+|.
T Consensus 142 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~- 218 (768)
T 3rgz_A 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF- 218 (768)
T ss_dssp SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-
T ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCC-
T ss_conf 797785638899989897983588587155664358988989897880346578--45478689898928827887711-
Q ss_pred HHCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHCC-C
Q ss_conf 10477679486578736330160100078789905422665677766444544333492023445688-897122117-8
Q 002771 253 VYELVNLTRLDLSSNKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKIS-KFPVILKTQ-L 330 (882)
Q Consensus 253 ~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~ip~~l~~~-~ 330 (882)
+.++++|++|++++|.+++.++. .+..+++|++|++++|.+ .+..+.. .+++|+.|++++|.+. .+|..+... +
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l--~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~ 294 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQF--VGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACD 294 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCC--EESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCT
T ss_pred CCCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCC--CCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCC
T ss_conf 12699999897948858781657-774488889898988866--5716724-3687898979178557725888884468
Q ss_pred CCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCC---CCCCCCCEEECCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 765898216626568993001026997439948898668-9899---898888659733755678688999997399910
Q 002771 331 QLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLR-SIKR---LPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSIS 406 (882)
Q Consensus 331 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~i~~---~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 406 (882)
+|+.|++++|.+.+..|..+. .+++|++|++++|.+. .++. ..+++|+.|++++|
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n------------------- 353 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFG--SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN------------------- 353 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGG--GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS-------------------
T ss_pred CCCEEECCCCCCCCCCCHHHH--CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCC-------------------
T ss_conf 688998968967784236775--58776677897885257379788724888878848478-------------------
Q ss_pred CCCCCCCCCCCCCCCC-CCCEEECCCCEEECCCCCCCCC---CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
Q ss_conf 5656665788646888-7758835676530257843137---87546982367467767421103479672762686366
Q 002771 407 NNYLTGEIPSSFCNLS-SIQYLEMSNNSFSGQIPQCLVN---STVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLE 482 (882)
Q Consensus 407 ~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 482 (882)
.+++.+|..+..++ +|+.|++++|.+++.+|..+.. .+|++|++++|.+++.+|..+..+++|+.|++++|.+.
T Consensus 354 --~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 354 --EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp --EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred --CCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf --437623098986322771998627874787676665332477618989778465424877756898798989588466
Q ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 868721214798867983687476556832247-8855998558817644412000699988895889746788870211
Q 002771 483 GPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGN-SALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLI 561 (882)
Q Consensus 483 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 561 (882)
+..|..+..+++|+.|++++|.+.+.+|..+.. ++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+.
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 85467774499889898978815471897882877732999019951375887881699899897539951896876885
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECC---------CC--------
Q ss_conf 7998939977686277763522107999859981175144558999888899998599778---------99--------
Q 002771 562 NCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLS---------HN-------- 624 (882)
Q Consensus 562 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls---------~N-------- 624 (882)
.+++|+.|++++|++++.+|..+..+++|++|++++|++.|.+|... .....+..+++. ++
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG--GTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred CCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHH--HCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 68999989897894337488777088989989898884688279578--6042122320134542111134443222233
Q ss_pred -----CCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEEECCHHHHHHHHCCCCEEECCCCCCC
Q ss_conf -----484678757886422102177875047888640368864102226999740504678764023538658899565
Q 002771 625 -----QLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQ 699 (882)
Q Consensus 625 -----~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 699 (882)
.+.+..+.. +..+.......... ....|..+.....++.++.||+++|+++
T Consensus 590 ~~~~~~~~~~~~~~-~~~l~~~~~~~l~~-----------------------~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQ-LNRLSTRNPCNITS-----------------------RVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp SEEEEECTTCCGGG-GGGGGGTCCSCTTS-----------------------CEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred CCCCCCCCCCCCHH-HHCCCCCCCCCCCC-----------------------CEECCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 22210013556323-20023211001133-----------------------1004627433403356657978588015
Q ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 46404320789997886788826756870011468998786988716654872355999999795757957148999986
Q 002771 700 GGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRGTQ 779 (882)
Q Consensus 700 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~iP~~~~ 779 (882)
|.+|..+++++.|+.|+|++|+++|.+|.+++++++|++|||++|+++|.+|..++.+++|+++|+++|+++|.||.+++
T Consensus 646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHH
T ss_conf 55877884141578784868803887896784777899898978802386886775788789787968815560899601
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77557432368888989999799999999
Q 002771 780 FNTFQNDSYAGNPGLCGFPLSESCDMDEA 808 (882)
Q Consensus 780 ~~~~~~~~~~gn~~lcg~~~~~~c~~~~~ 808 (882)
|.+|...+|.|||++||.|+. .|....+
T Consensus 726 ~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 726 FETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp GGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred HCCCCHHHHCCCCHHCCCCCC-CCCCCCC
T ss_conf 024897775698321088776-7888766
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=575.49 Aligned_cols=644 Identities=28% Similarity=0.422 Sum_probs=512.0
Q ss_pred CCCCEEECCCCCCCCC--CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCC
Q ss_conf 9999887899999999--8761266999999985888989877971365999898997758989877530--03699999
Q 002771 112 PRLQKLNLGSNDFNYS--KISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPN--MFTNQSKL 187 (882)
Q Consensus 112 ~~L~~L~L~~n~l~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~l~~L 187 (882)
.+++.|+|+++.+.+. .++..+.++++|+.++++.+.+. .+|..++.+++|++|+|++|.+.+.+|. .++++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 92789877899867755766965731680224678688867-87033245788998989898578707896787278899
Q ss_pred CEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEE
Q ss_conf 999813876888795000-18998848866478664448833---45999976898238889887851110477679486
Q 002771 188 SYLNFGGNQLTGQIPSSV-GELANLATVYLYFNSLKGTIPSR---IFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLD 263 (882)
Q Consensus 188 ~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 263 (882)
++|++++|.+.+..|..+ .++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+. ..+++|++|+
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~ 206 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLD 206 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEE
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEE
T ss_conf 98989688267747977856388999898979835885871556643589889898978803465784--5478689898
Q ss_pred CCCCCCCCCCCCHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
Q ss_conf 57873633016010007878990542266567776644454433349202344568889712211787658982166265
Q 002771 264 LSSNKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIH 343 (882)
Q Consensus 264 L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~l~ 343 (882)
+++|.+.+.++. +..+++|++|++++|.+. + .+|..+..+++|+.|++++|.+.
T Consensus 207 Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~--~----------------------~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 207 VSSNNFSTGIPF--LGDCSALQHLDISGNKLS--G----------------------DFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp CCSSCCCSCCCB--CTTCCSCCEEECCSSCCC--S----------------------CHHHHTTTCSSCCEEECCSSCCE
T ss_pred CCCCCCCCCCCC--CCCCCCCCEEECCCCCCC--C----------------------CCCHHHHCCCCCCEEECCCCCCC
T ss_conf 928827887711--126999998979488587--8----------------------16577744888898989888665
Q ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCC-CCCC---CCCCCCEEECCCCCCCCCCCCC---CCCCCEEECCCCCCCCCCCC
Q ss_conf 689930010269974399488986689-8998---9888865973375567868899---99973999105656665788
Q 002771 344 GRVPGWMWDVGIHTLSYLDLSQNFLRS-IKRL---PWKNLKNLYLDSNLLRGRLLDL---PPLMTIFSISNNYLTGEIPS 416 (882)
Q Consensus 344 ~~~~~~~~~~~~~~L~~L~L~~n~l~~-i~~~---~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~ 416 (882)
+.+|.. .+++|++|++++|.+.+ ++.. .+++|+.|++++|.+.+.++.. .+.|+.|++++|.+.+.+|.
T Consensus 261 ~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 261 GPIPPL----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp ESCCCC----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred CCCCCC----CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH
T ss_conf 716724----3687898979178557725888884468688998968967784236775587766778978852573797
Q ss_pred C-CCCCCCCCEEECCCCEEECCCCCCCCC-C-CCCEEECCCCCCCCCCCHHHHC--CCCCCEEECCCCCCCCCCCHHHHC
Q ss_conf 6-468887758835676530257843137-8-7546982367467767421103--479672762686366868721214
Q 002771 417 S-FCNLSSIQYLEMSNNSFSGQIPQCLVN-S-TVKFLDLRMNNFQGIIPQTYAK--DCNLTFLKLNGNKLEGPLPPSLIN 491 (882)
Q Consensus 417 ~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~ 491 (882)
. +..+++|++|++++|.+++.+|..+.. . +|+.|++++|.+.+..+..+.. +++|++|++++|.+.+.+|..+..
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 88724888878848478437623098986322771998627874787676665332477618989778465424877756
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 798867983687476556832247-8855998558817644412000699988895889746788870211799893997
Q 002771 492 CFSLHVIDVGNNNLSGEIPQCFGN-SALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLD 570 (882)
Q Consensus 492 l~~L~~L~ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 570 (882)
+++|+.|++++|.+++.+|..++. ++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|+.|+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEE
T ss_conf 89879898958846685467774499889898978815471897882877732999019951375887881699899897
Q ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 76862777635221079998599811751445589998888999985997789948467875788642210217787504
Q 002771 571 IGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVT 650 (882)
Q Consensus 571 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~ 650 (882)
+++|++++.+|.++..+++|++|++++|++.+.+|... ..+++|+.|++++|+++|.+|..++...............
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH--CCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCC
T ss_conf 53995189687688568999989897894337488777--0889899898988846882795786042122320134542
Q ss_pred EEEEEEECCCCCCCEEEEEEEEEEECCHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHH
Q ss_conf 78886403688641022269997405046787640235386588995654640432078999788678882675687001
Q 002771 651 VEVKYLSLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSL 730 (882)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 730 (882)
. .++...................+........+..+..++++.|.+.|.+|..++.++.|+.|||++|+++|.+|.++
T Consensus 575 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 575 Y--VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp E--EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred C--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 1--11134443222233222100135563232002321100113310046274334033566579785880155587788
Q ss_pred HCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 14689987869887166548723559999997957579571489999-867755743236888
Q 002771 731 ANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRG-TQFNTFQNDSYAGNP 792 (882)
Q Consensus 731 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~ 792 (882)
++++.|+.|+|++|+++|.+|..++.++.|+.||+++|+++|.+|.. ..+.......+.+|+
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred HCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 414157878486880388789678477789989897880238688677578878978796881
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=479.19 Aligned_cols=590 Identities=21% Similarity=0.251 Sum_probs=415.0
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99998878999999998761266999999985888989877971365999898997758989877530036999999998
Q 002771 112 PRLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLN 191 (882)
Q Consensus 112 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 191 (882)
+++++|++++|.+.+. .+..|.++++|++|++++|.+++..|..++++++|++|++++|.+....+..|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCEEECCCCCCCCC-CHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 8876888989977875-978871787675887889964856977874066768888999856756854530388889898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHH--CCCCCCEEECCCCCC
Q ss_conf 138768887950001899884886647866444883345999976898238889887851110--477679486578736
Q 002771 192 FGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVY--ELVNLTRLDLSSNKL 269 (882)
Q Consensus 192 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l 269 (882)
+++|.+.+..+..++++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|+.|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCC
T ss_conf 98996685396674156788889898995246672111245567779745884365297886244666321798889825
Q ss_pred CCCCCCHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCH
Q ss_conf 33016010007878990542266567776644454433349202344568889712211787658982166265689930
Q 002771 270 SGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGW 349 (882)
Q Consensus 270 ~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~l~~~~~~~ 349 (882)
++..+. .+..+++|+.+.+.++.+.... .. .++..+ ..+.|+.|++++|.+.+..+.+
T Consensus 184 ~~~~~~-~~~~l~~L~~L~l~~~~l~~~~--~~------------------~~~~~l-~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 184 KEFSPG-CFHAIGRLFGLFLNNVQLGPSL--TE------------------KLCLEL-ANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp CCBCTT-GGGGSSEECEEECTTCCCHHHH--HH------------------HHHHHH-TTSCCCEEECTTSCCCEECTTT
T ss_pred CCCCHH-HHHHHHHHHHHHCCCCCCCHHH--HH------------------HHHHHH-HHCCCCEEECCCCCCCCCCHHH
T ss_conf 655815-5532234455430566468056--77------------------787775-3151008874577436468667
Q ss_pred HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 01026997439948898668989989888865973375567868899999739991056566657886468887758835
Q 002771 350 MWDVGIHTLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSSIQYLEM 429 (882)
Q Consensus 350 ~~~~~~~~L~~L~L~~n~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 429 (882)
+.....++|++|++++|.+..++...+. ..+.|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFA------------------WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTT------------------TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEEC
T ss_pred HHCCCCCCCCEEECCCCCCCCCCCCCCC------------------CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 5146767788877878876756802116------------------7410568557788567658656267888557736
Q ss_pred CCCEEECC-----CCC----CCCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC--CCHHHHC--CCCC
Q ss_conf 67653025-----784----3137-8754698236746776742110347967276268636686--8721214--7988
Q 002771 430 SNNSFSGQ-----IPQ----CLVN-STVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGP--LPPSLIN--CFSL 495 (882)
Q Consensus 430 s~n~l~~~-----~p~----~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~--l~~L 495 (882)
++|...+. +|. .+.. ++|++|++++|.+.+..+..|.++++|++|++++|.+... ....+.. .++|
T Consensus 304 ~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L 383 (680)
T 1ziw_A 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383 (680)
T ss_dssp TTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred CCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCC
T ss_conf 33132133333554543865624677788887989826878855740656872898879801443235322024556867
Q ss_pred CEEECCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCC-HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 67983687476556832247-885599855881764441-2000699988895889746788870211799893997768
Q 002771 496 HVIDVGNNNLSGEIPQCFGN-SALKVFDMRMNRFNGSIP-QMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGN 573 (882)
Q Consensus 496 ~~L~ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 573 (882)
+.|++++|++.+..|..+.. ++|+.|++++|.+.+.++ ..|..+++|++|++++|++++..+..|..+++|+.|++++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCC
T ss_conf 66889999777677544207788888867787575435755325754612784489975422764550075431011014
Q ss_pred CCCC--CCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 6277--76352210799985998117514455899988889999859977899484678757886422102177875047
Q 002771 574 NHIN--DTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTV 651 (882)
Q Consensus 574 n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~ 651 (882)
|.+. +..|..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|++++..+...-+. .
T Consensus 464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~------------~- 528 (680)
T 1ziw_A 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML--EGLEKLEILDLQHNNLARLWKHANPGG------------P- 528 (680)
T ss_dssp SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCGGGGSTTSTTS------------C-
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHH--CCCCCCCEEECCCCCCCCCCHHHCCCC------------C-
T ss_conf 6442256677645557878999899998776794463--455346888588997300000004677------------4-
Q ss_pred EEEEEECCCCCCCEEEEEEEEEEECCHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHH
Q ss_conf 88864036886410222699974050467876402353865889956546404320789997886788826756870011
Q 002771 652 EVKYLSLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLA 731 (882)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 731 (882)
......++.|+.|++++|+++...+..|.++++|+.|++++|++++..+..|.
T Consensus 529 ---------------------------~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 529 ---------------------------IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp ---------------------------CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ---------------------------CHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHC
T ss_conf ---------------------------14233799888888999978877977734666752238999977767976837
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 468998786988716654872355-99999979575795714899998677557
Q 002771 732 NLTELESLDLSSNKLVGQIPMQMA-SLKSLSVLNLSHNQLEGPVPRGTQFNTFQ 784 (882)
Q Consensus 732 ~l~~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~l~ls~N~l~g~iP~~~~~~~~~ 784 (882)
.+++|+.|++++|++++..|..+. .+++|+.+++++|++.|.++....|..|.
T Consensus 582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~ 635 (680)
T 1ziw_A 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635 (680)
T ss_dssp TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred CCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 898888898999968705966830114665779831897025776689999998
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=476.21 Aligned_cols=591 Identities=21% Similarity=0.226 Sum_probs=343.7
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 88789999999987612669999999858889898779713659998989977589898775300369999999981387
Q 002771 116 KLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGN 195 (882)
Q Consensus 116 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n 195 (882)
.++.+++.++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus 8 ~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 8 VADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp EEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred EEECCCCCCCC--CCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 44877798052--641248--88768889899778759788717876758878899648569778740667688889998
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC
Q ss_conf 68887950001899884886647866444883345999976898238889887851110477679486578736330160
Q 002771 196 QLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVEL 275 (882)
Q Consensus 196 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~ 275 (882)
.+....+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 56756854530388889898989966853966741567888898989952466721112455677797458843652978
Q ss_pred HHHC--CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCHHH-C
Q ss_conf 1000--787899054226656777664445443334920234456888971221178765898216626568993001-0
Q 002771 276 YDFA--KLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMW-D 352 (882)
Q Consensus 276 ~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~l~~~~~~~~~-~ 352 (882)
.+. .+++|+.|++++|.+. + ..|..+..+.+|+.+++.++.+.......+. .
T Consensus 164 -~~~~~~~~~L~~L~L~~n~l~--~----------------------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 218 (680)
T 1ziw_A 164 -ELDIFANSSLKKLELSSNQIK--E----------------------FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218 (680)
T ss_dssp -HHGGGTTCEESEEECTTCCCC--C----------------------BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH
T ss_pred -HHHCCCCCCCCEEECCCCCCC--C----------------------CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf -862446663217988898256--5----------------------581555322344554305664680567778777
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 26997439948898668989989888865973375567868899999739991056566657886468887758835676
Q 002771 353 VGIHTLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNN 432 (882)
Q Consensus 353 ~~~~~L~~L~L~~n~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 432 (882)
...++|+.|++++|.+.++....+..+. .+.|+.|++++|.+++..+..|..+++|+.|++++|
T Consensus 219 l~~~~L~~L~L~~n~l~~~~~~~~~~l~----------------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (680)
T 1ziw_A 219 LANTSIRNLSLSNSQLSTTSNTTFLGLK----------------WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282 (680)
T ss_dssp HTTSCCCEEECTTSCCCEECTTTTGGGG----------------GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred HHHCCCCEEECCCCCCCCCCHHHHHCCC----------------CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 5315100887457743646866751467----------------677888778788767568021167410568557788
Q ss_pred EEECCCCCCCCC-CCCCEEECCCCCCCC---------CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
Q ss_conf 530257843137-875469823674677---------6742110347967276268636686872121479886798368
Q 002771 433 SFSGQIPQCLVN-STVKFLDLRMNNFQG---------IIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGN 502 (882)
Q Consensus 433 ~l~~~~p~~~~~-~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 502 (882)
.+.+..+..+.. .+|+.|++++|...+ +....|..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 56765865626788855773633132133333554543865624677788887989826878855740656872898879
Q ss_pred CCCCCC--CCCCCCC---CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCC
Q ss_conf 747655--6832247---885599855881764441200069998889588974678887-0211799893997768627
Q 002771 503 NNLSGE--IPQCFGN---SALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLS-PSLINCRYLEVLDIGNNHI 576 (882)
Q Consensus 503 n~l~~~--~p~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l 576 (882)
|.+... ....+.. +.|+.|++++|.+.+..+..|..+++|+.|++++|.+++.++ ..|.++++|+.|++++|++
T Consensus 363 n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred CCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 80144323532202455686766889999777677544207788888867787575435755325754612784489975
Q ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf 77635221079998599811751445589998888999985997789948467875788642210217787504788864
Q 002771 577 NDTFPYWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYL 656 (882)
Q Consensus 577 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (882)
.+..+..+..+++|++|++++|.+.+.......+..+++|+.|++++|.+++..|.. +.
T Consensus 443 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~-------------------- 501 (680)
T 1ziw_A 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LE-------------------- 501 (680)
T ss_dssp EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT-TT--------------------
T ss_pred CEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHH-HC--------------------
T ss_conf 422764550075431011014644225667764555787899989999877679446-34--------------------
Q ss_pred ECCCCCCCEEEEEEEEEEECCHHHHHHHHCCCCEEECCCCCCCCCCH--------HHHCCCCCCCEEECCCCCCCCCCCH
Q ss_conf 03688641022269997405046787640235386588995654640--------4320789997886788826756870
Q 002771 657 SLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIP--------AIVGKLNSLKGLNISHNNLTGGIPS 728 (882)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip--------~~l~~l~~L~~L~Ls~N~l~~~ip~ 728 (882)
.++.|+.|++++|++++..+ ..++.+++|+.|++++|+++...+.
T Consensus 502 ---------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 554 (680)
T 1ziw_A 502 ---------------------------GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554 (680)
T ss_dssp ---------------------------TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ---------------------------CCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf ---------------------------55346888588997300000004677414233799888888999978877977
Q ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01146899878698871665487235599999979575795714899998--677557432368888989999
Q 002771 729 SLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRGT--QFNTFQNDSYAGNPGLCGFPL 799 (882)
Q Consensus 729 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~iP~~~--~~~~~~~~~~~gn~~lcg~~~ 799 (882)
.|.++++|+.|++++|++++..+..|..+++|+.+++++|++++..|... .+..+....+.+||..|+++.
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 7346667522389999777679768378988888989999687059668301146657798318970257766
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=461.29 Aligned_cols=562 Identities=25% Similarity=0.282 Sum_probs=328.8
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 9999988789999999987612669999999858889898779-713659998989977589898775300369999999
Q 002771 111 LPRLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSI-PPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSY 189 (882)
Q Consensus 111 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 189 (882)
.+++++|+|++|.+.+. .+..|.++++|++|++++|...+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCEEECCCCCCCCC-CHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99868888877867832-96677662137088678997744419778537877888879899585319767157866587
Q ss_pred EECCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHHCC--CCCCEEEC
Q ss_conf 981387688879500--0189988488664786644488-334599997689823888988785111047--76794865
Q 002771 190 LNFGGNQLTGQIPSS--VGELANLATVYLYFNSLKGTIP-SRIFSLTSLKQVDFRHNQLSGSVPSSVYEL--VNLTRLDL 264 (882)
Q Consensus 190 L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L 264 (882)
|++++|.+.+..+.. +.++++|++|++++|.+++..+ ..+.++++|++|++++|.+.+..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEEC
T ss_conf 01767889734046764556679998889878642325665576388989898989847766788753556775035789
Q ss_pred CCCCCCCCCCCHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
Q ss_conf 78736330160100078789905422665677766444544333492023445688897122117876589821662656
Q 002771 265 SSNKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHG 344 (882)
Q Consensus 265 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~l~~ 344 (882)
+.|.+.+..+. .+..+.+ .+.. ..|+.|++++|.+.+
T Consensus 182 ~~n~l~~~~~~-~~~~~~~-----------------------------------------~~~~-~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 182 AANSLYSRVSV-DWGKCMN-----------------------------------------PFRN-MVLEILDVSGNGWTV 218 (844)
T ss_dssp CCSBSCCCCCC-CCCSSSC-----------------------------------------TTTT-CCBSEEBCSSCCSST
T ss_pred CCCCCCCCCCC-CHHHCCC-----------------------------------------CCCC-CCEEEEECCCCCCCH
T ss_conf 78866655455-3322377-----------------------------------------2235-740079657886865
Q ss_pred CCCCHHHCC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 899300102-6997439948898668989989888865973375567868899-99973999105656665788646888
Q 002771 345 RVPGWMWDV-GIHTLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNLLRGRLLDL-PPLMTIFSISNNYLTGEIPSSFCNLS 422 (882)
Q Consensus 345 ~~~~~~~~~-~~~~L~~L~L~~n~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~l~ 422 (882)
..+..+... ....+..+.++.+...... ...++.. ...+ .+... .+.++.|++++|.+.+..+..|..++
T Consensus 219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~~~--~~~~l~~--~~~~----~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 290 (844)
T 3j0a_A 219 DITGNFSNAISKSQAFSLILAHHIMGAGF--GFHNIKD--PDQN----TFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290 (844)
T ss_dssp TTTSGGGGTSCSCCBSEEECCSSCCBCSS--SCSSSTT--GGGT----TTTTTTTSCCCEEECTTCCCCEECSCCSSSCC
T ss_pred HHHHHHHHHCCCCCCCCEECCCCCCCCCC--CCCCCCC--CCHH----HHHCCCCCCCCEEECCCCCCCCCCHHHHHCCC
T ss_conf 67788876427441001121212234664--4456688--9855----65255547861898979945515863452589
Q ss_pred CCCEEECCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
Q ss_conf 77588356765302578431378754698236746776742110347967276268636686872121479886798368
Q 002771 423 SIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGN 502 (882)
Q Consensus 423 ~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 502 (882)
+|+.|++++| .+.+..+..|.++++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 291 ~L~~L~L~~n-----------------------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 291 DLKVLNLAYN-----------------------KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCCEEEEESC-----------------------CCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred CCCEEECCCC-----------------------CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 9999989798-----------------------18987968836888999898989978851878846899999898989
Q ss_pred CCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 7476556832247-885599855881764441200069998889588974678887021179989399776862777635
Q 002771 503 NNLSGEIPQCFGN-SALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFP 581 (882)
Q Consensus 503 n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 581 (882)
|.+.+..+..+.. ++|+.|++++|.+++. ..+++|+.|++++|+++. +|.. ..+++.+++++|.+.+...
T Consensus 348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDI 418 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTT
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCC-----CCCCCCCHHCCCCCCCCC-CCCC---CCCCCEEECCCCCCCCCCH
T ss_conf 987762866613788899988989977861-----688982320058997231-4554---5543122145675345755
Q ss_pred -HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEECCC
Q ss_conf -2210799985998117514455899988889999859977899484678757886422102177875047888640368
Q 002771 582 -YWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLN 660 (882)
Q Consensus 582 -~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (882)
..+..+++|++|++++|++.+..+.. ....+++|+.|++++|.+.+..+....
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~~L~~L~Ls~N~l~~~~~~~~~------------------------- 472 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQ-TPSENPSLEQLFLGENMLQLAWETELC------------------------- 472 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSS-SSCSCTTCCBCEEESCCCSSSCCSCCC-------------------------
T ss_pred HHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------
T ss_conf 666512776666667787125555433-356687310024777736441013553-------------------------
Q ss_pred CCCCEEEEEEEEEEECCHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEE
Q ss_conf 86410222699974050467876402353865889956546404320789997886788826756870011468998786
Q 002771 661 SSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLD 740 (882)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 740 (882)
.. .+..++.|+.|+|++|++++.+|..+..+++|+.|+|++|++++..|..+. ++|+.|+
T Consensus 473 ~~------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~ 532 (844)
T 3j0a_A 473 WD------------------VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILD 532 (844)
T ss_dssp SS------------------CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEE
T ss_pred HH------------------HHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEE
T ss_conf 55------------------544755365777889856553955704501221569999978745710110--0455888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 988716654872355999999795757957148999986775574323688889899997999999999
Q 002771 741 LSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRGTQFNTFQNDSYAGNPGLCGFPLSESCDMDEAP 809 (882)
Q Consensus 741 Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~~~~ 809 (882)
+++|++++.+|..+. .|+.+++++|++.|.++.. .|..-...++..+||.+....|..+...
T Consensus 533 Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~p~~~ 594 (844)
T 3j0a_A 533 ISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVYPDSF 594 (844)
T ss_dssp EEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSSCSSS
T ss_pred CCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCCCH----HHHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf 988847888966837---7688993199702536618----9999997368530266002755780665
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=441.49 Aligned_cols=526 Identities=21% Similarity=0.218 Sum_probs=334.2
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99998878999999998761266999999985888989877971365999898997758989877530036999999998
Q 002771 112 PRLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLN 191 (882)
Q Consensus 112 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 191 (882)
+.+++|++++|.+.+. .+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..++++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCCCEEECCCCCCCCC-CHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 8675898158734717-966725676652897889835524851136843367644889856545865523442153765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCC--EEECCCCCC
Q ss_conf 138768887950001899884886647866444883345999976898238889887851110477679--486578736
Q 002771 192 FGGNQLTGQIPSSVGELANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLT--RLDLSSNKL 269 (882)
Q Consensus 192 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--~L~L~~n~l 269 (882)
+++|.+.+..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+ .+++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred CCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCC
T ss_conf 21267665781012237822389887983411476545687656877765684455496563322156403896679814
Q ss_pred CCCCCCHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCH
Q ss_conf 33016010007878990542266567776644454433349202344568889712211787658982166265689930
Q 002771 270 SGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGW 349 (882)
Q Consensus 270 ~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~l~~~~~~~ 349 (882)
.+..+. .+ ...+|+.+++++|.. ++..+..+..+....+....+.+..
T Consensus 192 ~~~~~~-~~-~~~~L~~L~l~~~~~---------------------------~~~~~~~l~~~~l~~l~~~~~~~~~--- 239 (606)
T 3t6q_A 192 AGIEPG-AF-DSAVFQSLNFGGTQN---------------------------LLVIFKGLKNSTIQSLWLGTFEDMD--- 239 (606)
T ss_dssp CEECTT-TT-TTCEEEEEECTTCSC---------------------------HHHHHHHTTTCEEEEEECCCCTTSC---
T ss_pred CCCCHH-HH-HHCCCCCCCCCCCHH---------------------------HHHHHHHCCCCCHHHEECHHHCCCC---
T ss_conf 754866-73-001001355677266---------------------------7777651335644220020110264---
Q ss_pred HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 01026997439948898668989989888865973375567868899999739991056566657886468887758835
Q 002771 350 MWDVGIHTLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSSIQYLEM 429 (882)
Q Consensus 350 ~~~~~~~~L~~L~L~~n~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 429 (882)
...+....+.+.. ...++.+++++|.+++..+..|..+++|++|++
T Consensus 240 -------------------------------~~~i~~~~~~~l~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 285 (606)
T 3t6q_A 240 -------------------------------DEDISPAVFEGLC---EMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285 (606)
T ss_dssp -------------------------------CCCCCGGGGGGGG---GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEEC
T ss_pred -------------------------------CCCCCHHHHCHHH---CCCEEEEEEECCCCCCCCHHHHCCCCCCCEEEC
T ss_conf -------------------------------1226866743032---075059994457658557777445667888956
Q ss_pred CCCEEECCCCCCCCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCC
Q ss_conf 676530257843137-8754698236746776742110347967276268636686872-12147988679836874765
Q 002771 430 SNNSFSGQIPQCLVN-STVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPP-SLINCFSLHVIDVGNNNLSG 507 (882)
Q Consensus 430 s~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~n~l~~ 507 (882)
++|.++ .+|..+.. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.++. .+..+++|++|++++|.+.+
T Consensus 286 ~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 286 TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp TTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
T ss_conf 288267-7782141654688897716876867602330157689888989974443462455066758988788996664
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH-HHHC
Q ss_conf 568322478855998558817644412000699988895889746788870211799893997768627776352-2107
Q 002771 508 EIPQCFGNSALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPY-WLEI 586 (882)
Q Consensus 508 ~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~ 586 (882)
.. ..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+..
T Consensus 365 ~~---------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 365 SD---------------------CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp EE---------------------ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred CC---------------------CCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHC
T ss_conf 56---------------------752210567888989898996775788873477457768788886777565212417
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CH-HHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 99985998117514455899988889999859977899484678-75-78864221021778750478886403688641
Q 002771 587 LPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVL-PT-RYLNNFRAMIHGENNSVTVEVKYLSLLNSSYY 664 (882)
Q Consensus 587 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~-p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (882)
+++|++|++++|.+.+..+..+ ..+++|+.|++++|++.+.. |. ..+
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~----------------------------- 472 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSL----------------------------- 472 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGG-----------------------------
T ss_pred CCCCCEEECCCCCCCCCCHHHH--HCCCCCCEEECCCCCCCCCCCCCCHHH-----------------------------
T ss_conf 6558889898985577687787--378878889898998885434543124-----------------------------
Q ss_pred EEEEEEEEEEECCHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC
Q ss_conf 02226999740504678764023538658899565464043207899978867888267568700114689987869887
Q 002771 665 ACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSN 744 (882)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N 744 (882)
..++.|+.|++++|++++.+|..++.+++|+.|++++|++++.+|..+..++.| .|++++|
T Consensus 473 ------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 473 ------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp ------------------GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred ------------------CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCC
T ss_conf ------------------048876688799996670686463265678889898980686896684756651-8987689
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 16654872355999999795757957148999
Q 002771 745 KLVGQIPMQMASLKSLSVLNLSHNQLEGPVPR 776 (882)
Q Consensus 745 ~l~~~ip~~l~~l~~L~~l~ls~N~l~g~iP~ 776 (882)
++++.+|..+..+++|+.+++++|++.|.++.
T Consensus 534 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 534 HISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 41426876625677878896779986166775
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=439.30 Aligned_cols=528 Identities=19% Similarity=0.220 Sum_probs=381.0
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 76126699999998588898987797136599989899775898987753003699999999813876888795000189
Q 002771 129 ISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLNFGGNQLTGQIPSSVGEL 208 (882)
Q Consensus 129 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 208 (882)
+|..+. ..+++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..++++
T Consensus 27 iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 27 IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CCCCCC--CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 867789--867589815873471796672567665289788983552485113684336764488985654586552344
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCHHHCCCCCCC--C
Q ss_conf 98848866478664448833459999768982388898878511104776794865787363301601000787899--0
Q 002771 209 ANLATVYLYFNSLKGTIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNKLSGTVELYDFAKLKNLK--W 286 (882)
Q Consensus 209 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~--~ 286 (882)
++|++|++++|.+++..+..+..+++|++|++++|.+.+.....+..+++|+.|++++|.+++ ++...+..+++|+ .
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLS 183 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEE
T ss_pred CCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCHHHHHHHCCCCEEE
T ss_conf 215376521267665781012237822389887983411476545687656877765684455-4965633221564038
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCC
Q ss_conf 54226656777664445443334920234456888971221178765898216626568993001026997439948898
Q 002771 287 LVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQN 366 (882)
Q Consensus 287 L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 366 (882)
|++++|.+. + ++........|+.+++++|.. .+..+. .+..+..
T Consensus 184 L~l~~n~l~--~-----------------------~~~~~~~~~~L~~L~l~~~~~---~~~~~~--~l~~~~l------ 227 (606)
T 3t6q_A 184 LNLNGNDIA--G-----------------------IEPGAFDSAVFQSLNFGGTQN---LLVIFK--GLKNSTI------ 227 (606)
T ss_dssp EECTTCCCC--E-----------------------ECTTTTTTCEEEEEECTTCSC---HHHHHH--HTTTCEE------
T ss_pred EECCCCCCC--C-----------------------CCHHHHHHCCCCCCCCCCCHH---HHHHHH--HCCCCCH------
T ss_conf 966798147--5-----------------------486673001001355677266---777765--1335644------
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCC
Q ss_conf 66898998988886597337556786889999973999105656665788646888775883567653025784313787
Q 002771 367 FLRSIKRLPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSSIQYLEMSNNSFSGQIPQCLVNST 446 (882)
Q Consensus 367 ~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~ 446 (882)
+.+. + ..+..+....+.. ..........
T Consensus 228 -------------~~l~---------------------~-------------~~~~~~~~~~i~~-----~~~~~l~~~~ 255 (606)
T 3t6q_A 228 -------------QSLW---------------------L-------------GTFEDMDDEDISP-----AVFEGLCEMS 255 (606)
T ss_dssp -------------EEEE---------------------C-------------CCCTTSCCCCCCG-----GGGGGGGGSE
T ss_pred -------------HHEE---------------------C-------------HHHCCCCCCCCCH-----HHHCHHHCCC
T ss_conf -------------2200---------------------2-------------0110264122686-----6743032075
Q ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCC-CCCCEEECCC
Q ss_conf 546982367467767421103479672762686366868721214798867983687476556832247-8855998558
Q 002771 447 VKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNLSGEIPQCFGN-SALKVFDMRM 525 (882)
Q Consensus 447 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~-~~L~~L~L~~ 525 (882)
++.+++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+.. ++|+.|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred EEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCC
T ss_conf 059994457658557777445667888956288267-7782141654688897716876867602330157689888989
Q ss_pred CCCCCCCC-HHHCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
Q ss_conf 81764441-20006999888958897467888--7021179989399776862777635221079998599811751445
Q 002771 526 NRFNGSIP-QMFAKSCDLRSLNLNGNQLEGPL--SPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWG 602 (882)
Q Consensus 526 n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 602 (882)
|.+.+.++ ..+..+++|++|++++|.+++.. +..+.++++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC
T ss_conf 97444346245506675898878899666456752210567888989898996775788873477457768788886777
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEEECCHHHHH
Q ss_conf 58999888899998599778994846787578864221021778750478886403688641022269997405046787
Q 002771 603 PIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLE 682 (882)
Q Consensus 603 ~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (882)
..+.. .+..+++|+.|++++|.+.+..|..+ .
T Consensus 415 ~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~---------------------------------------------- 446 (606)
T 3t6q_A 415 KDAQS-PFQNLHLLKVLNLSHSLLDISSEQLF-D---------------------------------------------- 446 (606)
T ss_dssp CTTCC-TTTTCTTCCEEECTTCCCBTTCTTTT-T----------------------------------------------
T ss_pred CCCCH-HHHCCCCCCEEECCCCCCCCCCHHHH-H----------------------------------------------
T ss_conf 56521-24176558889898985577687787-3----------------------------------------------
Q ss_pred HHHCCCCEEECCCCCCCCCC---HHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 64023538658899565464---043207899978867888267568700114689987869887166548723559999
Q 002771 683 RVLTIFTTIDLSSNRFQGGI---PAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKS 759 (882)
Q Consensus 683 ~~~~~L~~L~Ls~N~l~~~i---p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 759 (882)
.++.|+.|++++|++++.. +..+..+++|+.|++++|++++.+|..|..+++|+.|++++|++++.+|..+..++.
T Consensus 447 -~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 447 -GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp -TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred -CCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf -7887888989899888543454312404887668879999667068646326567888989898068689668475665
Q ss_pred CCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 997957579571489999-867755743236888898999
Q 002771 760 LSVLNLSHNQLEGPVPRG-TQFNTFQNDSYAGNPGLCGFP 798 (882)
Q Consensus 760 L~~l~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg~~ 798 (882)
| .+++++|++++..|.. ..+..+....+.+||..|.++
T Consensus 526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred C-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 1-89876894142687662567787889677998616677
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=437.75 Aligned_cols=540 Identities=22% Similarity=0.207 Sum_probs=370.6
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCC
Q ss_conf 88789999999987612669999999858889898779713659998989977589898775-30036999999998138
Q 002771 116 KLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEI-PNMFTNQSKLSYLNFGG 194 (882)
Q Consensus 116 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~Ls~ 194 (882)
..+.+++.++. +|. ..+++++|++++|.+++..|..|.++++|++|++++|...+.+ |..|.++++|++|++++
T Consensus 8 ~~dcs~~~L~~--vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSSC--CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEECCCCCCCC--CCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 89823799777--898---9998688888778678329667766213708867899774441977853787788887989
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCC
Q ss_conf 7688879500018998848866478664448833--4599997689823888988785-111047767948657873633
Q 002771 195 NQLTGQIPSSVGELANLATVYLYFNSLKGTIPSR--IFSLTSLKQVDFRHNQLSGSVP-SSVYELVNLTRLDLSSNKLSG 271 (882)
Q Consensus 195 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~ 271 (882)
|.+.+..|..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+ ..+.++++|+.|++++|.+.+
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCE
T ss_conf 95853197671578665870176788973404676455667999888987864232566557638898989898984776
Q ss_pred CCCCHHHCCC--CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCH
Q ss_conf 0160100078--78990542266567776644454433349202344568889712211787658982166265689930
Q 002771 272 TVELYDFAKL--KNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGW 349 (882)
Q Consensus 272 ~i~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~l~~~~~~~ 349 (882)
..+. .+..+ ++|+.|+++.|. +.+..+..
T Consensus 163 ~~~~-~l~~l~~~~L~~L~L~~n~------------------------------------------------l~~~~~~~ 193 (844)
T 3j0a_A 163 VCEH-ELEPLQGKTLSFFSLAANS------------------------------------------------LYSRVSVD 193 (844)
T ss_dssp CCSG-GGHHHHHCSSCCCEECCSB------------------------------------------------SCCCCCCC
T ss_pred ECHH-HCCCCCCCCCCEEECCCCC------------------------------------------------CCCCCCCC
T ss_conf 6788-7535567750357897886------------------------------------------------66554553
Q ss_pred HHC----CCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 010----2699743994889866898998988886597337556786889999973999105656665788646888775
Q 002771 350 MWD----VGIHTLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSISNNYLTGEIPSSFCNLSSIQ 425 (882)
Q Consensus 350 ~~~----~~~~~L~~L~L~~n~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 425 (882)
+.. .....|+.|++++|.+.......+... -....+..+.+..+.....
T Consensus 194 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---------------l~~~~l~~L~l~~~~~~~~------------ 246 (844)
T 3j0a_A 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA---------------ISKSQAFSLILAHHIMGAG------------ 246 (844)
T ss_dssp CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT---------------SCSCCBSEEECCSSCCBCS------------
T ss_pred HHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH---------------CCCCCCCCEECCCCCCCCC------------
T ss_conf 3223772235740079657886865677888764---------------2744100112121223466------------
Q ss_pred EEECCCCEEECCCCC---CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
Q ss_conf 883567653025784---31378754698236746776742110347967276268636686872121479886798368
Q 002771 426 YLEMSNNSFSGQIPQ---CLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGN 502 (882)
Q Consensus 426 ~L~Ls~n~l~~~~p~---~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 502 (882)
+..+.+.+.... .....+++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 247 ---~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 247 ---FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp ---SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred ---CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf ---44456688985565255547861898979945515863452589999998979818987968836888999898989
Q ss_pred CCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 7476556832247-885599855881764441200069998889588974678887021179989399776862777635
Q 002771 503 NNLSGEIPQCFGN-SALKVFDMRMNRFNGSIPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFP 581 (882)
Q Consensus 503 n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 581 (882)
|.+.+..+..+.. ++|+.|++++|.+....+..|..+++|+.|++++|.+++. ..+++|+.|++++|+++.. |
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l-~ 397 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL-P 397 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC-C
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-----CCCCCCCHHCCCCCCCCCC-C
T ss_conf 978851878846899999898989987762866613788899988989977861-----6889823200589972314-5
Q ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEECCCC
Q ss_conf 22107999859981175144558999888899998599778994846787578864221021778750478886403688
Q 002771 582 YWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNS 661 (882)
Q Consensus 582 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (882)
. ...+++.|++++|++.+.... .....+++|+.|++++|++++..+...+
T Consensus 398 ~---~~~~l~~L~ls~N~l~~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------------------- 447 (844)
T 3j0a_A 398 K---INLTANLIHLSENRLENLDIL-YFLLRVPHLQILILNQNRFSSCSGDQTP-------------------------- 447 (844)
T ss_dssp C---CCTTCCEEECCSCCCCSSTTH-HHHTTCTTCCEEEEESCCCCCCCSSSSS--------------------------
T ss_pred C---CCCCCCEEECCCCCCCCCCHH-HHHHCCCCCCEEECCCCCCCCCCCCCCC--------------------------
T ss_conf 5---455431221456753457556-6651277666666778712555543335--------------------------
Q ss_pred CCCEEEEEEEEEEECCHHHHHHHHCCCCEEECCCCCCC-----CCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCC
Q ss_conf 64102226999740504678764023538658899565-----4640432078999788678882675687001146899
Q 002771 662 SYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQ-----GGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTEL 736 (882)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 736 (882)
..++.|+.|++++|.++ +..+..+..+++|+.|+|++|++++.+|..|..+++|
T Consensus 448 ---------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 506 (844)
T 3j0a_A 448 ---------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506 (844)
T ss_dssp ---------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred ---------------------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHH
T ss_conf ---------------------66873100247777364410135535554475536577788985655395570450122
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8786988716654872355999999795757957148999986775574323688889899997
Q 002771 737 ESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQLEGPVPRGTQFNTFQNDSYAGNPGLCGFPLS 800 (882)
Q Consensus 737 ~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~~ 800 (882)
+.|+|++|++++..|..+. ++|+.|++++|++++.+|.. |..+....+.+||..|++++.
T Consensus 507 ~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 507 RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred HEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH--HCCCCEEEECCCCCCCCCCCH
T ss_conf 1569999978745710110--04558889888478889668--377688993199702536618
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=431.59 Aligned_cols=521 Identities=20% Similarity=0.194 Sum_probs=354.4
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99998878999999998761266999999985888989877971365999898997758989877530036999999998
Q 002771 112 PRLQKLNLGSNDFNYSKISSGFSQLRSLTLLNLSSSNFTGSIPPSLGNLTQLVYLDLSNNSFIGEIPNMFTNQSKLSYLN 191 (882)
Q Consensus 112 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 191 (882)
+++++|++++|.+.+. .+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCEE-CHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEE
T ss_conf 8767887888975773-754555776674886887736643977730601068867879856304852207865378887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCC----EEECCC
Q ss_conf 13876888795000189988488664786644-4883345999976898238889887851110477679----486578
Q 002771 192 FGGNQLTGQIPSSVGELANLATVYLYFNSLKG-TIPSRIFSLTSLKQVDFRHNQLSGSVPSSVYELVNLT----RLDLSS 266 (882)
Q Consensus 192 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~ 266 (882)
+++|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+..+++|+ .+++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCC
T ss_conf 03775554451134898877989687885232530686732677778876688531057334121203420024300468
Q ss_pred CCCCCCCCCHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC
Q ss_conf 73633016010007878990542266567776644454433349202344568889712211787658982166265689
Q 002771 267 NKLSGTVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLNLSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRV 346 (882)
Q Consensus 267 n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~l~~~~ 346 (882)
|.++ .++...+... +|+.|++++|.+. +. .+|..+..++.++.+++..+.+....
T Consensus 191 n~l~-~~~~~~~~~~-~L~~L~L~~n~~~--~~---------------------~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 191 NPID-FIQDQAFQGI-KLHELTLRGNFNS--SN---------------------IMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp CCCC-EECTTTTTTC-EEEEEEEESCCSC--HH---------------------HHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred CCCC-EECCCCCCCC-EEEEEECCCCCCC--HH---------------------HHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 9753-2571105676-0433524678561--66---------------------77888602665652314111103677
Q ss_pred CCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 93001026997439948898668989989888865973375567868899999739991-05656665788646888775
Q 002771 347 PGWMWDVGIHTLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNLLRGRLLDLPPLMTIFSI-SNNYLTGEIPSSFCNLSSIQ 425 (882)
Q Consensus 347 ~~~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l-~~n~l~~~~~~~l~~l~~L~ 425 (882)
. +..+....+..+.. ..++.+++ ..+.+.+..+. +..+++|+
T Consensus 246 ~--------------------l~~~~~~~~~~l~~----------------l~l~~l~l~~~~~~~~~~~~-~~~l~~L~ 288 (606)
T 3vq2_A 246 N--------------------LEIFEPSIMEGLCD----------------VTIDEFRLTYTNDFSDDIVK-FHCLANVS 288 (606)
T ss_dssp C--------------------CSCCCGGGGTTGGG----------------SEEEEEEECCCTTCCGGGGS-CGGGTTCS
T ss_pred C--------------------CCCCCHHHHHHHHH----------------CCHHHEECCCCCCCCCCCCC-CCCCCCCC
T ss_conf 4--------------------10268177666654----------------34745012366555543222-35488789
Q ss_pred EEECCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC
Q ss_conf 88356765302578431378754698236746776742110347967276268636686872121479886798368747
Q 002771 426 YLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYAKDCNLTFLKLNGNKLEGPLPPSLINCFSLHVIDVGNNNL 505 (882)
Q Consensus 426 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 505 (882)
.|++++|.+. .+| .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|..
T Consensus 289 ~L~l~~~~~~-~l~------------------------~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 289 AMSLAGVSIK-YLE------------------------DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEEEESCCCC-CCC------------------------CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred EEEECCCCCH-HHH------------------------HCCCCCCCCEEECCCCCC-CCCC-CC-CCCCCCEEECCCCCC
T ss_conf 8771476604-435------------------------433401177897646667-6546-67-887556445447868
Q ss_pred CCCCCCCCCC-CCCCEEECCCCCCCCC--CCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-
Q ss_conf 6556832247-8855998558817644--41200069998889588974678887021179989399776862777635-
Q 002771 506 SGEIPQCFGN-SALKVFDMRMNRFNGS--IPQMFAKSCDLRSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFP- 581 (882)
Q Consensus 506 ~~~~p~~~~~-~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~- 581 (882)
.+.. .+.. ++|+.|++++|.+++. .+..+..+++|+.|++++|.+++ +|..+.++++|+.|++++|++.+..+
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred CCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCH
T ss_conf 5310--0024898887977587368775201221467755486788995300-055406888889658988705875376
Q ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCHHHHHHHHHCCCCCCCCEEEEEEEEECCC
Q ss_conf 221079998599811751445589998888999985997789948467-8757886422102177875047888640368
Q 002771 582 YWLEILPELRVLILRSNRFWGPIGNTKTRAPFSKLRILDLSHNQLTGV-LPTRYLNNFRAMIHGENNSVTVEVKYLSLLN 660 (882)
Q Consensus 582 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (882)
..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+. +|..+
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~-------------------------- 469 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNVF-------------------------- 469 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCC--------------------------
T ss_pred HHHHCCCCCCEEECCCCCCCCCCHHHH--CCCCCCCEEECCCCCCCCCCHHHHH--------------------------
T ss_conf 456462137889896897874335553--4778789898989837985467760--------------------------
Q ss_pred CCCCEEEEEEEEEEECCHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEE
Q ss_conf 86410222699974050467876402353865889956546404320789997886788826756870011468998786
Q 002771 661 SSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSNRFQGGIPAIVGKLNSLKGLNISHNNLTGGIPSSLANLTELESLD 740 (882)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 740 (882)
..++.|+.|++++|++++..|..++.+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus 470 ----------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 470 ----------------------ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp ----------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred ----------------------CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEE
T ss_conf ----------------------4578899898988857764865615464689898989957874877706887689888
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCC
Q ss_conf 988716654872355999-9997957579571489999
Q 002771 741 LSSNKLVGQIPMQMASLK-SLSVLNLSHNQLEGPVPRG 777 (882)
Q Consensus 741 Ls~N~l~~~ip~~l~~l~-~L~~l~ls~N~l~g~iP~~ 777 (882)
+++|+++ .+|..+..++ +|+.+++++|++.|..+..
T Consensus 528 l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 528 CSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 9898376-668767521021748876289866477648
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=424.26 Aligned_cols=521 Identities=19% Similarity=0.263 Sum_probs=247.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCEEECCCCCCEEEEECCCCCCCCCCC
Q ss_conf 89799999999954415777899875788556689889998899999998---960416999939999879997852247
Q 002771 27 LCSQEQSSALLQFKQLFSFAKTSSSQCDGYQQSYPKMKYWKEDADCCSSW---DGVTCDMVTGQVIGLDLSCSWLHGSIS 103 (882)
Q Consensus 27 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~~w---~gv~c~~~~~~v~~l~l~~~~l~g~~~ 103 (882)
....+|+.||.+++.++..+.- .. ..++++...+|+.+.+|| .| .||+|+.. ++|++|+|+++++.|.++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w-~~----~~~~~~~~~~W~~~~~~c-~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp 98 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNW-SQ----QGFGTQPGANWNFNKELD-MWGAQPGVSLNSN-GRVTGLSLEGFGASGRVP 98 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGC-CC----CC------CCCCCSSCGG-GTTCCTTEEECTT-CCEEEEECTTSCCEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCCCC-CC----CCCCCCCCCCCCCCCCCC-CCCCCCCEEECCC-CCEEEEEECCCCCCCCCC
T ss_conf 6677889999999997589974-54----776776578877799800-0147798487678-978899842766577288
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCC-----------CCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCEEECCCC
Q ss_conf 9876558999998878999999998-----------7612669999999858889898779713659-998989977589
Q 002771 104 SNSSLFFLPRLQKLNLGSNDFNYSK-----------ISSGFSQLRSLTLLNLSSSNFTGSIPPSLGN-LTQLVYLDLSNN 171 (882)
Q Consensus 104 ~~~~l~~l~~L~~L~L~~n~l~~~~-----------~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n 171 (882)
+ .+.++++|++|+|++|.+.... +|... +..|+ ++++.+.+.+.+|..+.. +..+..+++...
T Consensus 99 ~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~ 173 (636)
T 4eco_A 99 D--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173 (636)
T ss_dssp G--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred H--HHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 5--78568451189876885123774334532356733888--88887-6577755411706667788777764275546
Q ss_pred CCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-----------------CCCCCC--
Q ss_conf 8987753003699999999813--8768887950001899884886647866444-----------------883345--
Q 002771 172 SFIGEIPNMFTNQSKLSYLNFG--GNQLTGQIPSSVGELANLATVYLYFNSLKGT-----------------IPSRIF-- 230 (882)
Q Consensus 172 ~~~~~~p~~~~~l~~L~~L~Ls--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~-- 230 (882)
.+.. .....++.+.+. .|.+++ +|..++++++|++|++++|.+++. +|..++
T Consensus 174 ~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~ 246 (636)
T 4eco_A 174 SIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246 (636)
T ss_dssp CCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred CCCC------CCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHC
T ss_conf 5410------13344213001013677750-7877725647878988688236642322122222100102486322004
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC-CCC-CCCCHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997689823888988785111047767948657873-633-0160100078789905422665677766444544333
Q 002771 231 SLTSLKQVDFRHNQLSGSVPSSVYELVNLTRLDLSSNK-LSG-TVELYDFAKLKNLKWLVLSNNSLSLTTKLTVSSSFLN 308 (882)
Q Consensus 231 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~ 308 (882)
++++|++|++++|.+.+.+|..+.++++|+.|++++|. +++ .+|. .+..+.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~-------------------------- 299 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALA-------------------------- 299 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHH--------------------------
T ss_pred CCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHH-HHHHHH--------------------------
T ss_conf 46878889804885776283888349997889784798876653357-887543--------------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 49202344568889712211787658982166265689930010269974399488986689899898888659733755
Q 002771 309 LSRLGLSACKISKFPVILKTQLQLEWLDLSENQIHGRVPGWMWDVGIHTLSYLDLSQNFLRSIKRLPWKNLKNLYLDSNL 388 (882)
Q Consensus 309 L~~L~L~~~~l~~ip~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~L~~L~l~~n~ 388 (882)
.+..+++|+.|++++|.+.
T Consensus 300 ----------------~~~~l~~L~~L~L~~n~l~--------------------------------------------- 318 (636)
T 4eco_A 300 ----------------DAPVGEKIQIIYIGYNNLK--------------------------------------------- 318 (636)
T ss_dssp ----------------HSGGGGTCCEEECCSSCCS---------------------------------------------
T ss_pred ----------------CCCCCCCCCEEECCCCCCC---------------------------------------------
T ss_conf ----------------0465788888989799377---------------------------------------------
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHH
Q ss_conf 6786889999973999105656665788--64688877588356765302578431378754698236746776742110
Q 002771 389 LRGRLLDLPPLMTIFSISNNYLTGEIPS--SFCNLSSIQYLEMSNNSFSGQIPQCLVNSTVKFLDLRMNNFQGIIPQTYA 466 (882)
Q Consensus 389 l~~~~~~~~~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~ 466 (882)
.+|. .+..+++|+.|++++|.+.+.+| .+.
T Consensus 319 ------------------------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip------------------------~~~ 350 (636)
T 4eco_A 319 ------------------------TFPVETSLQKMKKLGMLECLYNQLEGKLP------------------------AFG 350 (636)
T ss_dssp ------------------------SCCCHHHHTTCTTCCEEECCSCCCEEECC------------------------CCE
T ss_pred ------------------------CCCCHHHHCCCCCCCEEECCCCCCCCCHH------------------------HHC
T ss_conf ------------------------66765554257888989690880705166------------------------647
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCC-CCEEECCCCCCCCCCCCCCCC---CCCCEEECCCCCCCCCCCHHHCCCCCC
Q ss_conf 3479672762686366868721214798-867983687476556832247---885599855881764441200069998
Q 002771 467 KDCNLTFLKLNGNKLEGPLPPSLINCFS-LHVIDVGNNNLSGEIPQCFGN---SALKVFDMRMNRFNGSIPQMFAKSCDL 542 (882)
Q Consensus 467 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ls~n~l~~~~p~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L 542 (882)
.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+.. ++|+.|++++|.+.+..|..+....
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~-- 426 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD-- 426 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC--
T ss_pred CCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC--
T ss_conf 8898898989899403-033756510236868985298275-446655333457668897748857886524420022--
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCC------CCCCCCC
Q ss_conf 8895889746788870211799893997768627776352210799985998117514455899988------8899998
Q 002771 543 RSLNLNGNQLEGPLSPSLINCRYLEVLDIGNNHINDTFPYWLEILPELRVLILRSNRFWGPIGNTKT------RAPFSKL 616 (882)
Q Consensus 543 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~~~l~~L 616 (882)
.....+++|+.|++++|.+++..+..+..+++|++|++++|.+. .+|.... ...+++|
T Consensus 427 ---------------~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L 490 (636)
T 4eco_A 427 ---------------PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL 490 (636)
T ss_dssp ---------------SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC
T ss_pred ---------------CCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCC
T ss_conf ---------------01125898888977279668678788715898898989799788-73978840440012214773
Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEEECCHHHHHHHHCCCCEEECCCC
Q ss_conf 59977899484678757886422102177875047888640368864102226999740504678764023538658899
Q 002771 617 RILDLSHNQLTGVLPTRYLNNFRAMIHGENNSVTVEVKYLSLLNSSYYACYESIILTMKGIDLQLERVLTIFTTIDLSSN 696 (882)
Q Consensus 617 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N 696 (882)
+.|++++|.++ .+|..+.. ..++.|+.|++++|
T Consensus 491 ~~L~Ls~N~l~-~lp~~~~~----------------------------------------------~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 491 TSIDLRFNKLT-KLSDDFRA----------------------------------------------TTLPYLVGIDLSYN 523 (636)
T ss_dssp CEEECCSSCCC-BCCGGGST----------------------------------------------TTCTTCCEEECCSS
T ss_pred CEEECCCCCCC-CCCHHHHH----------------------------------------------CCCCCCCEEECCCC
T ss_conf 38989699388-16854534----------------------------------------------45887698989899
Q ss_pred CCCCCCHHHHCCCCCCCEEEC------CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 565464043207899978867------88826756870011468998786988716654872355999999795757957
Q 002771 697 RFQGGIPAIVGKLNSLKGLNI------SHNNLTGGIPSSLANLTELESLDLSSNKLVGQIPMQMASLKSLSVLNLSHNQL 770 (882)
Q Consensus 697 ~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l 770 (882)
++++ +|..++.+++|+.|++ ++|++.+.+|..+..+++|+.|++++|++ +.+|..+. +.|+.+++++|++
T Consensus 524 ~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred CCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHH--CCCCEEECCCCCC
T ss_conf 8877-682353088878788988866566731212737785699878898989947-70597683--8678998769987
Q ss_pred CCC
Q ss_conf 148
Q 002771 771 EGP 773 (882)
Q Consensus 771 ~g~ 773 (882)
...
T Consensus 600 ~~~ 602 (636)
T 4eco_A 600 ISI 602 (636)
T ss_dssp CEE
T ss_pred CCC
T ss_conf 633
Done!