BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002772
         (882 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 29.3 bits (64), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 21/161 (13%)

Query: 580 YGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVT-FIALFAACSHSGMVSEGMDLFYKMKD 638
           Y   G+ QE +E  ++ +        +KP+ +  +I L AA   +G +   +  +     
Sbjct: 77  YKERGQLQEAIEHYRHAL-------RLKPDFIDGYINLAAALVAAGDMEGAVQAYVS--- 126

Query: 639 DYGIEPSPDHYACVVDL------LGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIH 692
              ++ +PD Y    DL      LGR  + +  Y       P F  A AWS+L       
Sbjct: 127 --ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF--AVAWSNLGCVFNAQ 182

Query: 693 QNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAM 733
             + +     +    L+P+    Y+ L N+   A+++D+A+
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223


>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
           Crescentus Cb15 Complexed With Calcium And Isoprenyl
           Diphosphate
 pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
           Crescentus Cb15 Complexed With Calcium And Isoprenyl
           Diphosphate
          Length = 345

 Score = 29.3 bits (64), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 552 CGCLNFARRVFDLMPVRNVI-TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE 610
            G   FAR  F+LM   N +    ++  A  +  EG EVL+L+++     S+   ++  +
Sbjct: 132 VGDFLFAR-AFELMVETNSMKALEILARASRVIAEG-EVLQLMRSHDLNLSQAVYLEIIQ 189

Query: 611 VTFIALFAACSHSGMVSEGMDLF-YKMKDDYGI 642
                LFAA S +G VS G+D+   +   DYG+
Sbjct: 190 AKTAELFAAASEAGAVSAGVDVAKSEALRDYGL 222


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,033,320
Number of Sequences: 62578
Number of extensions: 1012421
Number of successful extensions: 2472
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2472
Number of HSP's gapped (non-prelim): 2
length of query: 882
length of database: 14,973,337
effective HSP length: 107
effective length of query: 775
effective length of database: 8,277,491
effective search space: 6415055525
effective search space used: 6415055525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)