Query 002772
Match_columns 882
No_of_seqs 771 out of 5231
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 06:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3E-155 6E-160 1394.5 93.6 811 37-880 46-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 7E-125 2E-129 1104.3 67.6 613 245-882 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 8.7E-84 1.9E-88 775.2 63.8 577 38-648 148-728 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.6E-70 3.5E-75 644.4 51.9 435 39-480 84-522 (697)
5 PLN03218 maturation of RBCL 1; 100.0 4.7E-68 1E-72 623.3 53.7 524 73-673 366-907 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 2.8E-63 6.1E-68 583.0 57.7 548 214-801 367-964 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.7E-35 5.8E-40 363.6 67.7 659 40-739 191-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-34 3.3E-39 356.9 67.1 658 41-743 158-867 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 2.1E-35 4.6E-40 253.5 7.8 106 749-872 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 4.1E-24 8.9E-29 263.9 62.3 632 48-744 34-743 (1157)
11 PRK11447 cellulose synthase su 99.9 3.8E-22 8.2E-27 246.6 54.4 610 82-743 33-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 2.6E-21 5.6E-26 227.6 58.1 639 44-743 44-741 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.4E-19 2.9E-24 213.2 53.2 587 125-743 56-707 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 7.4E-20 1.6E-24 189.6 36.1 444 251-731 51-508 (966)
15 KOG4626 O-linked N-acetylgluco 99.8 8.7E-19 1.9E-23 181.8 26.8 413 293-742 58-485 (966)
16 KOG2002 TPR-containing nuclear 99.8 2.4E-15 5.3E-20 165.2 45.9 598 93-745 146-801 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.8 2.1E-16 4.7E-21 183.6 38.8 220 513-742 340-571 (615)
18 PRK11788 tetratricopeptide rep 99.8 4.4E-17 9.4E-22 179.8 28.9 199 541-749 143-354 (389)
19 PRK11788 tetratricopeptide rep 99.8 3.8E-17 8.2E-22 180.3 25.7 305 255-626 42-363 (389)
20 PRK10049 pgaA outer membrane p 99.8 5.5E-16 1.2E-20 183.4 36.5 398 256-742 23-456 (765)
21 KOG2002 TPR-containing nuclear 99.8 9E-14 1.9E-18 153.1 48.8 643 40-723 39-760 (1018)
22 PRK15174 Vi polysaccharide exp 99.8 1.2E-15 2.7E-20 176.4 35.8 350 331-713 17-386 (656)
23 TIGR00990 3a0801s09 mitochondr 99.7 1.3E-14 2.8E-19 168.7 41.2 445 220-741 130-596 (615)
24 PRK15174 Vi polysaccharide exp 99.7 2.6E-15 5.6E-20 173.8 33.8 325 387-743 43-382 (656)
25 KOG4422 Uncharacterized conser 99.7 1.5E-13 3.2E-18 137.5 39.0 327 48-421 121-468 (625)
26 PRK14574 hmsH outer membrane p 99.7 5.6E-14 1.2E-18 162.6 40.5 441 226-714 43-519 (822)
27 KOG4422 Uncharacterized conser 99.7 4.4E-13 9.5E-18 134.2 37.6 447 145-672 116-587 (625)
28 PRK10049 pgaA outer membrane p 99.7 1.9E-13 4.1E-18 161.9 41.5 370 216-639 48-456 (765)
29 KOG0495 HAT repeat protein [RN 99.7 4.9E-11 1.1E-15 125.9 53.8 507 166-755 367-891 (913)
30 KOG4318 Bicoid mRNA stability 99.7 6.6E-13 1.4E-17 144.5 39.1 638 63-744 11-810 (1088)
31 PRK14574 hmsH outer membrane p 99.6 4.4E-12 9.4E-17 147.1 41.5 429 197-679 48-518 (822)
32 KOG2076 RNA polymerase III tra 99.6 4.8E-11 1E-15 131.3 46.0 608 52-738 149-891 (895)
33 KOG2003 TPR repeat-containing 99.5 5.3E-12 1.2E-16 127.0 25.9 271 430-728 428-709 (840)
34 KOG2076 RNA polymerase III tra 99.5 5.2E-10 1.1E-14 123.3 42.1 517 197-741 153-768 (895)
35 KOG0495 HAT repeat protein [RN 99.5 1.5E-09 3.3E-14 114.9 43.2 369 249-721 517-893 (913)
36 PF13429 TPR_15: Tetratricopep 99.5 5E-14 1.1E-18 146.9 9.2 256 458-740 14-275 (280)
37 KOG4318 Bicoid mRNA stability 99.5 1.2E-10 2.5E-15 127.4 32.0 372 348-753 202-604 (1088)
38 KOG1126 DNA-binding cell divis 99.4 1.5E-11 3.2E-16 131.2 20.7 245 467-742 334-586 (638)
39 KOG0547 Translocase of outer m 99.4 5.3E-10 1.1E-14 114.6 30.6 212 517-739 339-563 (606)
40 KOG1126 DNA-binding cell divis 99.3 7.1E-11 1.5E-15 126.1 20.0 277 436-742 334-620 (638)
41 KOG1155 Anaphase-promoting com 99.3 1.6E-09 3.4E-14 110.6 28.1 357 316-738 161-532 (559)
42 KOG2003 TPR repeat-containing 99.3 4E-10 8.6E-15 113.8 23.4 292 461-783 428-723 (840)
43 KOG1173 Anaphase-promoting com 99.3 2.7E-09 5.9E-14 111.7 30.0 232 500-741 274-517 (611)
44 KOG1915 Cell cycle control pro 99.3 5.6E-08 1.2E-12 99.5 37.6 489 219-740 75-623 (677)
45 TIGR02521 type_IV_pilW type IV 99.3 2.2E-10 4.7E-15 116.3 20.9 199 538-742 30-232 (234)
46 PRK10747 putative protoheme IX 99.3 2.8E-09 6.1E-14 116.5 29.5 125 609-739 262-387 (398)
47 TIGR00540 hemY_coli hemY prote 99.3 2.6E-09 5.6E-14 117.4 29.3 141 556-739 246-396 (409)
48 TIGR00540 hemY_coli hemY prote 99.3 9.1E-10 2E-14 121.0 24.5 252 463-739 95-361 (409)
49 PRK10747 putative protoheme IX 99.3 1.8E-09 3.8E-14 118.0 26.0 254 397-709 129-391 (398)
50 PF13429 TPR_15: Tetratricopep 99.2 1.3E-11 2.9E-16 128.7 8.6 250 428-707 15-276 (280)
51 KOG2047 mRNA splicing factor [ 99.2 3.9E-07 8.4E-12 97.0 40.8 375 79-480 104-539 (835)
52 KOG1155 Anaphase-promoting com 99.2 3.1E-09 6.7E-14 108.5 24.2 280 461-788 236-522 (559)
53 PF13041 PPR_2: PPR repeat fam 99.2 2.3E-11 5E-16 88.5 5.7 50 246-295 1-50 (50)
54 PF13041 PPR_2: PPR repeat fam 99.2 5.3E-11 1.1E-15 86.6 6.1 50 568-622 1-50 (50)
55 KOG1174 Anaphase-promoting com 99.2 2.9E-07 6.3E-12 92.8 33.8 268 416-712 227-504 (564)
56 KOG1915 Cell cycle control pro 99.1 1.7E-07 3.6E-12 96.1 31.4 412 331-779 85-533 (677)
57 PRK12370 invasion protein regu 99.1 5.2E-09 1.1E-13 119.6 23.6 245 467-743 276-536 (553)
58 KOG0985 Vesicle coat protein c 99.1 2.9E-06 6.2E-11 94.6 42.3 601 83-739 474-1246(1666)
59 KOG4162 Predicted calmodulin-b 99.1 3.2E-07 7E-12 100.1 34.2 491 158-742 240-783 (799)
60 KOG2047 mRNA splicing factor [ 99.1 1.8E-06 3.8E-11 92.2 38.6 308 112-448 101-452 (835)
61 KOG1173 Anaphase-promoting com 99.1 8.4E-08 1.8E-12 100.9 28.5 257 353-637 247-516 (611)
62 KOG1840 Kinesin light chain [C 99.1 9.4E-09 2E-13 111.5 21.4 237 504-740 199-477 (508)
63 KOG2376 Signal recognition par 99.1 6E-07 1.3E-11 95.0 33.3 431 255-735 19-513 (652)
64 KOG3616 Selective LIM binding 99.1 6.1E-06 1.3E-10 88.9 41.1 527 51-743 453-1025(1636)
65 KOG1129 TPR repeat-containing 99.1 3.9E-09 8.5E-14 102.7 15.2 228 425-743 227-459 (478)
66 PRK11189 lipoprotein NlpI; Pro 99.0 2.4E-08 5.1E-13 104.4 21.7 213 518-743 40-266 (296)
67 KOG0547 Translocase of outer m 99.0 2E-07 4.4E-12 96.1 27.2 338 150-532 120-490 (606)
68 COG2956 Predicted N-acetylgluc 99.0 2E-07 4.3E-12 91.3 25.5 310 362-765 47-370 (389)
69 COG2956 Predicted N-acetylgluc 99.0 1.1E-07 2.3E-12 93.1 23.6 285 332-672 48-344 (389)
70 PRK12370 invasion protein regu 99.0 4E-08 8.8E-13 112.3 22.3 212 518-742 275-502 (553)
71 TIGR02521 type_IV_pilW type IV 99.0 3.7E-08 7.9E-13 99.8 19.0 164 570-742 31-198 (234)
72 COG3071 HemY Uncharacterized e 99.0 6.1E-07 1.3E-11 90.9 26.8 287 261-600 97-391 (400)
73 PRK11189 lipoprotein NlpI; Pro 98.9 1.3E-07 2.8E-12 98.9 22.4 232 465-723 39-281 (296)
74 KOG3785 Uncharacterized conser 98.9 9E-07 2E-11 87.5 25.9 150 554-711 338-493 (557)
75 COG3063 PilF Tfp pilus assembl 98.9 8.7E-08 1.9E-12 89.7 17.7 162 573-744 38-204 (250)
76 KOG3616 Selective LIM binding 98.9 3.5E-06 7.6E-11 90.7 31.2 490 126-738 457-962 (1636)
77 COG3071 HemY Uncharacterized e 98.9 1.4E-06 3.1E-11 88.3 26.6 116 363-480 97-215 (400)
78 KOG1840 Kinesin light chain [C 98.9 1E-07 2.3E-12 103.5 19.9 239 422-707 200-478 (508)
79 KOG0985 Vesicle coat protein c 98.9 1.2E-05 2.7E-10 89.8 35.2 610 45-726 609-1326(1666)
80 KOG3785 Uncharacterized conser 98.9 1.4E-05 3E-10 79.3 31.2 155 230-392 164-324 (557)
81 KOG1174 Anaphase-promoting com 98.8 8.8E-06 1.9E-10 82.5 29.9 405 317-787 95-519 (564)
82 KOG3617 WD40 and TPR repeat-co 98.8 0.00014 2.9E-09 80.1 40.6 574 40-742 724-1359(1416)
83 KOG2376 Signal recognition par 98.8 3.8E-05 8.2E-10 81.8 33.4 435 152-634 19-515 (652)
84 KOG1127 TPR repeat-containing 98.8 3.4E-05 7.3E-10 86.8 34.4 577 95-741 474-1103(1238)
85 KOG1156 N-terminal acetyltrans 98.8 7.1E-05 1.5E-09 80.7 35.5 379 227-673 51-466 (700)
86 KOG4162 Predicted calmodulin-b 98.7 0.00011 2.4E-09 80.8 36.3 245 105-376 316-573 (799)
87 KOG1127 TPR repeat-containing 98.7 0.00015 3.2E-09 81.8 36.2 642 44-725 494-1192(1238)
88 PF12569 NARP1: NMDA receptor- 98.7 4.8E-05 1E-09 84.2 32.6 420 256-737 12-515 (517)
89 KOG1125 TPR repeat-containing 98.6 2.2E-06 4.7E-11 91.0 18.2 201 538-740 318-525 (579)
90 KOG1129 TPR repeat-containing 98.6 1.7E-06 3.8E-11 84.7 15.3 220 354-637 227-456 (478)
91 KOG1156 N-terminal acetyltrans 98.6 0.00023 4.9E-09 76.9 32.0 413 296-744 20-470 (700)
92 cd05804 StaR_like StaR_like; a 98.6 3.8E-05 8.3E-10 83.5 27.7 295 424-743 9-337 (355)
93 KOG0548 Molecular co-chaperone 98.6 2.7E-05 5.9E-10 82.1 24.7 216 508-742 228-455 (539)
94 PF12569 NARP1: NMDA receptor- 98.5 1.6E-05 3.4E-10 88.0 23.5 257 460-744 12-293 (517)
95 COG3063 PilF Tfp pilus assembl 98.5 1.3E-05 2.7E-10 75.5 19.0 192 543-741 39-235 (250)
96 PRK15359 type III secretion sy 98.5 1.6E-06 3.5E-11 79.5 13.2 124 590-724 13-137 (144)
97 KOG1128 Uncharacterized conser 98.5 2.1E-06 4.5E-11 93.4 15.7 225 416-743 393-617 (777)
98 KOG3617 WD40 and TPR repeat-co 98.5 0.00076 1.7E-08 74.5 34.9 119 41-171 756-884 (1416)
99 KOG0624 dsRNA-activated protei 98.5 0.00018 3.8E-09 71.5 26.4 210 516-746 167-398 (504)
100 PRK10370 formate-dependent nit 98.5 4.6E-06 1E-10 81.0 15.5 119 623-743 52-174 (198)
101 PLN02789 farnesyltranstransfer 98.5 2.5E-05 5.5E-10 81.5 22.0 215 516-739 49-299 (320)
102 PF04733 Coatomer_E: Coatomer 98.5 5.5E-06 1.2E-10 85.2 16.3 158 544-713 107-270 (290)
103 TIGR03302 OM_YfiO outer membra 98.4 1.2E-05 2.5E-10 81.6 17.9 179 538-742 32-232 (235)
104 PF12854 PPR_1: PPR repeat 98.4 3.4E-07 7.3E-12 59.6 4.2 34 415-448 1-34 (34)
105 PRK15359 type III secretion sy 98.4 9.4E-06 2E-10 74.5 14.7 108 631-743 14-122 (144)
106 KOG0548 Molecular co-chaperone 98.4 0.00022 4.7E-09 75.5 26.1 166 545-726 304-473 (539)
107 PRK15363 pathogenicity island 98.4 5.4E-06 1.2E-10 74.4 12.3 120 645-787 34-154 (157)
108 KOG0624 dsRNA-activated protei 98.4 0.00029 6.2E-09 70.1 24.7 288 427-742 44-370 (504)
109 PRK04841 transcriptional regul 98.4 0.0076 1.6E-07 74.6 44.3 367 326-712 348-764 (903)
110 PF12854 PPR_1: PPR repeat 98.4 5.4E-07 1.2E-11 58.6 4.1 33 641-673 2-34 (34)
111 PF04733 Coatomer_E: Coatomer 98.3 1.4E-05 3.1E-10 82.2 16.4 219 506-742 37-265 (290)
112 KOG4340 Uncharacterized conser 98.3 0.00015 3.3E-09 70.5 21.3 182 545-739 247-440 (459)
113 KOG1070 rRNA processing protei 98.3 3.1E-05 6.8E-10 89.9 19.5 200 536-744 1455-1665(1710)
114 PRK10370 formate-dependent nit 98.3 4.7E-05 1E-09 74.0 17.7 157 546-719 23-184 (198)
115 cd05804 StaR_like StaR_like; a 98.3 0.00053 1.2E-08 74.5 28.0 263 454-743 8-294 (355)
116 KOG1128 Uncharacterized conser 98.3 2.1E-05 4.5E-10 85.9 16.1 190 534-743 393-583 (777)
117 PRK04841 transcriptional regul 98.3 0.00022 4.9E-09 88.1 27.6 360 356-743 347-761 (903)
118 KOG1914 mRNA cleavage and poly 98.2 0.012 2.7E-07 62.6 34.8 427 210-664 13-528 (656)
119 PLN02789 farnesyltranstransfer 98.2 8.9E-05 1.9E-09 77.4 19.0 187 544-739 42-247 (320)
120 COG5010 TadD Flp pilus assembl 98.2 8.9E-05 1.9E-09 71.6 17.1 153 575-735 71-224 (257)
121 TIGR03302 OM_YfiO outer membra 98.2 5.8E-05 1.3E-09 76.5 17.1 182 504-710 33-234 (235)
122 KOG1070 rRNA processing protei 98.2 0.0001 2.2E-09 85.9 20.1 226 452-706 1458-1698(1710)
123 PRK15179 Vi polysaccharide bio 98.2 8.6E-05 1.9E-09 85.5 18.8 190 504-717 27-226 (694)
124 COG5010 TadD Flp pilus assembl 98.2 7.4E-05 1.6E-09 72.1 15.2 136 606-743 62-198 (257)
125 PRK15179 Vi polysaccharide bio 98.1 0.00017 3.6E-09 83.2 20.5 143 534-686 81-229 (694)
126 COG4783 Putative Zn-dependent 98.1 0.00068 1.5E-08 71.3 22.9 117 621-739 317-434 (484)
127 KOG1125 TPR repeat-containing 98.1 0.00012 2.7E-09 78.0 17.5 223 397-638 296-526 (579)
128 TIGR02552 LcrH_SycD type III s 98.1 4E-05 8.8E-10 69.9 12.5 97 646-742 17-114 (135)
129 COG4783 Putative Zn-dependent 98.1 0.00043 9.3E-09 72.8 20.9 144 573-743 309-455 (484)
130 TIGR00756 PPR pentatricopeptid 98.1 5E-06 1.1E-10 55.1 4.5 35 249-283 1-35 (35)
131 TIGR00756 PPR pentatricopeptid 98.1 5.2E-06 1.1E-10 55.0 4.3 35 146-180 1-35 (35)
132 KOG4340 Uncharacterized conser 98.0 0.00053 1.1E-08 66.9 18.1 178 552-738 125-335 (459)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 7.8E-05 1.7E-09 79.3 12.8 123 613-740 172-295 (395)
134 KOG3060 Uncharacterized conser 97.9 0.0013 2.7E-08 63.2 18.7 173 542-725 55-234 (289)
135 PF13812 PPR_3: Pentatricopept 97.9 1.4E-05 3E-10 52.5 4.0 34 145-178 1-34 (34)
136 PF13812 PPR_3: Pentatricopept 97.9 1.9E-05 4.1E-10 51.8 4.2 34 248-281 1-34 (34)
137 PRK14720 transcript cleavage f 97.9 0.0019 4.2E-08 75.2 22.7 232 420-724 30-268 (906)
138 KOG1914 mRNA cleavage and poly 97.9 0.061 1.3E-06 57.6 31.9 211 521-739 310-536 (656)
139 TIGR02552 LcrH_SycD type III s 97.9 0.00022 4.7E-09 65.0 12.3 115 592-715 5-121 (135)
140 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00061 1.3E-08 72.6 15.1 128 540-676 170-298 (395)
141 KOG0553 TPR repeat-containing 97.7 0.00037 8.1E-09 68.7 11.7 98 621-721 92-191 (304)
142 KOG3081 Vesicle coat complex C 97.7 0.0085 1.9E-07 58.2 20.3 172 529-712 98-275 (299)
143 PF01535 PPR: PPR repeat; Int 97.7 5.1E-05 1.1E-09 48.5 3.7 31 249-279 1-31 (31)
144 PF09976 TPR_21: Tetratricopep 97.7 0.0014 3E-08 60.4 14.7 92 573-673 15-112 (145)
145 PF01535 PPR: PPR repeat; Int 97.7 4.6E-05 9.9E-10 48.7 3.3 31 146-176 1-31 (31)
146 PLN03088 SGT1, suppressor of 97.6 0.00046 1E-08 74.0 12.0 83 658-740 14-97 (356)
147 cd00189 TPR Tetratricopeptide 97.6 0.0005 1.1E-08 57.6 9.2 93 649-741 3-96 (100)
148 KOG2053 Mitochondrial inherita 97.5 0.28 6.1E-06 56.0 37.9 99 227-329 53-154 (932)
149 COG3898 Uncharacterized membra 97.5 0.12 2.5E-06 53.2 25.7 273 434-738 97-388 (531)
150 PF09976 TPR_21: Tetratricopep 97.4 0.0025 5.4E-08 58.7 12.6 125 612-738 14-143 (145)
151 PRK14720 transcript cleavage f 97.4 0.029 6.3E-07 65.8 23.5 175 357-581 90-268 (906)
152 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0016 3.5E-08 57.5 10.8 61 682-742 42-105 (119)
153 PF13432 TPR_16: Tetratricopep 97.4 0.00044 9.6E-09 53.4 6.2 58 685-742 3-60 (65)
154 PLN03088 SGT1, suppressor of 97.4 0.0015 3.3E-08 70.0 12.2 107 618-726 10-117 (356)
155 KOG3081 Vesicle coat complex C 97.4 0.013 2.8E-07 56.9 16.8 119 546-672 144-268 (299)
156 PRK02603 photosystem I assembl 97.4 0.003 6.6E-08 60.1 13.0 127 572-728 37-166 (172)
157 PF13414 TPR_11: TPR repeat; P 97.4 0.00037 8.1E-09 54.6 5.5 61 681-741 5-66 (69)
158 KOG0553 TPR repeat-containing 97.4 0.00085 1.8E-08 66.3 8.9 89 653-741 88-177 (304)
159 PF12895 Apc3: Anaphase-promot 97.4 0.00017 3.6E-09 59.2 3.5 57 681-738 27-83 (84)
160 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.003 6.4E-08 55.8 11.5 103 614-716 6-113 (119)
161 PF13432 TPR_16: Tetratricopep 97.3 0.0004 8.6E-09 53.7 5.0 62 652-713 3-65 (65)
162 PF13431 TPR_17: Tetratricopep 97.3 0.00013 2.9E-09 47.3 1.8 32 702-733 2-33 (34)
163 KOG1538 Uncharacterized conser 97.3 0.034 7.3E-07 60.4 20.2 137 546-743 710-847 (1081)
164 COG4235 Cytochrome c biogenesi 97.3 0.0022 4.7E-08 63.9 10.8 106 643-748 153-262 (287)
165 KOG3060 Uncharacterized conser 97.3 0.0087 1.9E-07 57.6 14.1 167 553-728 26-203 (289)
166 PRK15331 chaperone protein Sic 97.3 0.0088 1.9E-07 54.4 13.4 89 653-741 44-133 (165)
167 PRK10153 DNA-binding transcrip 97.2 0.0071 1.5E-07 67.8 15.9 141 566-742 333-482 (517)
168 PF04840 Vps16_C: Vps16, C-ter 97.2 0.2 4.4E-06 52.4 25.3 110 541-672 179-288 (319)
169 PF05843 Suf: Suppressor of fo 97.2 0.0048 1E-07 63.8 12.5 135 571-714 2-142 (280)
170 CHL00033 ycf3 photosystem I as 97.1 0.0025 5.4E-08 60.5 9.6 93 646-738 35-138 (168)
171 KOG0550 Molecular chaperone (D 97.1 0.0027 5.9E-08 65.2 10.1 89 654-742 257-350 (486)
172 PRK02603 photosystem I assembl 97.1 0.0036 7.9E-08 59.6 10.6 81 648-728 37-121 (172)
173 KOG2053 Mitochondrial inherita 97.1 0.8 1.7E-05 52.5 32.7 212 53-278 20-256 (932)
174 CHL00033 ycf3 photosystem I as 97.1 0.016 3.5E-07 54.9 14.7 109 570-712 35-153 (168)
175 PF14559 TPR_19: Tetratricopep 97.1 0.00037 8.1E-09 54.4 2.7 32 681-712 27-58 (68)
176 cd00189 TPR Tetratricopeptide 97.1 0.0043 9.3E-08 51.7 9.6 91 618-710 8-99 (100)
177 PF14938 SNAP: Soluble NSF att 97.0 0.047 1E-06 56.7 18.1 155 542-710 97-268 (282)
178 PF13371 TPR_9: Tetratricopept 97.0 0.0019 4.2E-08 51.2 5.9 57 687-743 3-59 (73)
179 PF13414 TPR_11: TPR repeat; P 96.9 0.0012 2.6E-08 51.7 4.5 65 646-710 3-69 (69)
180 PF14938 SNAP: Soluble NSF att 96.9 0.072 1.6E-06 55.3 18.6 131 554-715 89-232 (282)
181 KOG2280 Vacuolar assembly/sort 96.9 1.1 2.5E-05 50.3 28.4 342 277-671 426-795 (829)
182 PF04840 Vps16_C: Vps16, C-ter 96.9 0.54 1.2E-05 49.2 24.5 107 425-564 181-287 (319)
183 PF14559 TPR_19: Tetratricopep 96.9 0.0012 2.6E-08 51.5 3.8 53 690-742 2-54 (68)
184 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.004 8.7E-08 66.0 8.2 69 674-742 70-141 (453)
185 PRK15363 pathogenicity island 96.8 0.045 9.7E-07 49.7 13.6 93 569-670 34-127 (157)
186 PF10037 MRP-S27: Mitochondria 96.7 0.021 4.6E-07 61.4 13.3 120 499-623 61-186 (429)
187 PF08579 RPM2: Mitochondrial r 96.7 0.019 4.1E-07 48.1 9.9 79 574-658 29-116 (120)
188 KOG1130 Predicted G-alpha GTPa 96.7 0.0056 1.2E-07 62.7 8.1 263 461-741 26-343 (639)
189 PF05843 Suf: Suppressor of fo 96.7 0.02 4.3E-07 59.2 12.4 137 422-618 2-148 (280)
190 PRK10153 DNA-binding transcrip 96.7 0.033 7.2E-07 62.5 14.9 49 695-743 400-450 (517)
191 PF12895 Apc3: Anaphase-promot 96.7 0.0033 7.2E-08 51.5 5.2 80 583-671 2-83 (84)
192 PF13371 TPR_9: Tetratricopept 96.5 0.0062 1.3E-07 48.2 5.6 64 654-717 3-67 (73)
193 COG4700 Uncharacterized protei 96.5 0.042 9.1E-07 50.3 11.2 99 641-740 84-187 (251)
194 PRK10803 tol-pal system protei 96.5 0.019 4.1E-07 58.2 10.2 61 681-741 182-245 (263)
195 PF12688 TPR_5: Tetratrico pep 96.4 0.044 9.6E-07 47.8 10.7 92 575-671 6-100 (120)
196 KOG1130 Predicted G-alpha GTPa 96.4 0.015 3.3E-07 59.7 8.5 97 541-637 197-302 (639)
197 PF13428 TPR_14: Tetratricopep 96.3 0.0048 1E-07 43.0 3.6 41 681-721 3-43 (44)
198 PF12688 TPR_5: Tetratrico pep 96.3 0.027 5.9E-07 49.1 9.1 84 655-738 10-100 (120)
199 PF06239 ECSIT: Evolutionarily 96.3 0.056 1.2E-06 51.4 11.5 120 179-313 46-169 (228)
200 PRK10803 tol-pal system protei 96.3 0.041 8.9E-07 55.8 11.5 94 621-714 154-252 (263)
201 KOG2041 WD40 repeat protein [G 96.3 2.6 5.7E-05 46.9 25.3 194 129-374 678-876 (1189)
202 PF03704 BTAD: Bacterial trans 96.3 0.028 6.2E-07 51.7 9.5 114 620-748 16-136 (146)
203 PF12921 ATP13: Mitochondrial 96.2 0.049 1.1E-06 48.1 10.1 95 539-654 2-96 (126)
204 PF13281 DUF4071: Domain of un 96.2 0.37 8.1E-06 50.9 18.1 160 544-712 146-338 (374)
205 PF08579 RPM2: Mitochondrial r 96.2 0.052 1.1E-06 45.6 9.2 79 252-331 29-116 (120)
206 PF07079 DUF1347: Protein of u 96.1 2.3 5.1E-05 45.1 29.9 58 681-739 462-521 (549)
207 COG4700 Uncharacterized protei 96.1 0.66 1.4E-05 42.8 16.6 133 606-741 85-221 (251)
208 PF06239 ECSIT: Evolutionarily 96.0 0.056 1.2E-06 51.4 9.9 90 567-662 44-154 (228)
209 COG5107 RNA14 Pre-mRNA 3'-end 96.0 2.7 5.8E-05 44.5 25.8 74 211-284 36-112 (660)
210 KOG0550 Molecular chaperone (D 96.0 1.4 3E-05 46.1 20.3 164 546-734 256-435 (486)
211 PF10037 MRP-S27: Mitochondria 96.0 0.063 1.4E-06 57.8 11.5 120 534-659 61-186 (429)
212 PRK10866 outer membrane biogen 96.0 0.35 7.6E-06 48.7 16.2 171 545-740 38-239 (243)
213 COG0457 NrfG FOG: TPR repeat [ 95.8 2.2 4.8E-05 42.2 22.5 217 519-742 38-265 (291)
214 KOG4555 TPR repeat-containing 95.8 0.053 1.2E-06 46.5 7.9 91 654-744 51-146 (175)
215 KOG1538 Uncharacterized conser 95.7 0.61 1.3E-05 51.1 17.1 202 148-373 601-827 (1081)
216 KOG0543 FKBP-type peptidyl-pro 95.6 0.094 2E-06 54.6 10.6 96 647-742 258-355 (397)
217 KOG2796 Uncharacterized conser 95.4 0.66 1.4E-05 45.3 14.7 169 542-716 139-323 (366)
218 KOG2796 Uncharacterized conser 95.4 0.39 8.4E-06 46.8 12.9 171 220-393 139-326 (366)
219 KOG2114 Vacuolar assembly/sort 95.3 7.3 0.00016 44.8 25.2 55 426-480 710-764 (933)
220 PF13424 TPR_12: Tetratricopep 95.2 0.012 2.7E-07 47.2 2.2 60 681-740 7-73 (78)
221 COG3898 Uncharacterized membra 95.2 4.8 0.0001 42.0 24.3 291 364-689 98-405 (531)
222 PF13424 TPR_12: Tetratricopep 95.2 0.028 6.1E-07 45.1 4.2 68 571-638 6-74 (78)
223 PRK11906 transcriptional regul 95.1 1.1 2.5E-05 48.1 16.7 159 571-737 252-431 (458)
224 KOG2066 Vacuolar assembly/sort 94.9 8.1 0.00018 44.1 23.1 21 254-274 362-382 (846)
225 KOG0543 FKBP-type peptidyl-pro 94.9 0.17 3.6E-06 52.9 9.7 82 681-788 259-340 (397)
226 PF09205 DUF1955: Domain of un 94.8 1.5 3.2E-05 38.1 13.4 140 581-745 13-152 (161)
227 PRK11906 transcriptional regul 94.7 0.39 8.5E-06 51.5 12.1 117 625-741 273-400 (458)
228 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.65 1.4E-05 49.8 13.7 75 715-792 248-330 (453)
229 KOG2041 WD40 repeat protein [G 94.7 9.5 0.00021 42.8 27.5 42 232-275 678-719 (1189)
230 KOG1920 IkappaB kinase complex 94.6 2.7 5.8E-05 50.1 19.4 92 546-672 959-1052(1265)
231 PRK10866 outer membrane biogen 94.6 3.1 6.8E-05 41.9 18.0 23 458-480 38-60 (243)
232 PF03704 BTAD: Bacterial trans 94.6 0.25 5.4E-06 45.4 9.4 71 573-649 65-139 (146)
233 PF04053 Coatomer_WDAD: Coatom 94.4 0.27 5.8E-06 54.0 10.6 132 580-743 271-403 (443)
234 PF12921 ATP13: Mitochondrial 94.3 0.32 7E-06 42.9 9.0 84 609-693 1-102 (126)
235 COG4235 Cytochrome c biogenesi 94.2 0.74 1.6E-05 46.4 12.2 30 569-598 155-184 (287)
236 KOG3941 Intermediate in Toll s 94.2 0.58 1.3E-05 46.1 10.9 88 39-127 64-172 (406)
237 COG3118 Thioredoxin domain-con 93.9 1.3 2.8E-05 44.5 13.0 119 620-742 144-265 (304)
238 PF13525 YfiO: Outer membrane 93.9 3 6.6E-05 40.7 15.9 143 572-742 7-170 (203)
239 COG0457 NrfG FOG: TPR repeat [ 93.8 7.5 0.00016 38.2 23.4 201 504-711 59-268 (291)
240 PF04184 ST7: ST7 protein; In 93.7 4.3 9.3E-05 44.0 17.2 56 575-636 264-321 (539)
241 PF13512 TPR_18: Tetratricopep 93.7 0.96 2.1E-05 40.4 10.6 57 658-714 22-82 (142)
242 KOG2396 HAT (Half-A-TPR) repea 93.6 13 0.00028 40.3 20.6 102 606-711 455-563 (568)
243 PF13525 YfiO: Outer membrane 93.3 1.4 3.1E-05 43.0 12.6 163 546-733 12-198 (203)
244 smart00299 CLH Clathrin heavy 93.3 3 6.5E-05 37.8 14.0 86 80-171 10-95 (140)
245 PF00515 TPR_1: Tetratricopept 93.2 0.097 2.1E-06 33.8 2.8 32 681-712 3-34 (34)
246 PF07719 TPR_2: Tetratricopept 92.9 0.15 3.2E-06 32.8 3.5 32 681-712 3-34 (34)
247 COG3118 Thioredoxin domain-con 92.8 6.6 0.00014 39.7 15.9 147 578-731 142-290 (304)
248 KOG1941 Acetylcholine receptor 92.7 3.3 7.1E-05 42.6 13.8 231 464-709 18-276 (518)
249 PF13512 TPR_18: Tetratricopep 92.7 2.6 5.7E-05 37.7 11.8 19 695-713 115-133 (142)
250 KOG2610 Uncharacterized conser 92.5 1.5 3.3E-05 44.4 11.1 158 582-749 115-283 (491)
251 COG4785 NlpI Lipoprotein NlpI, 92.4 4.7 0.0001 38.5 13.5 178 552-743 78-267 (297)
252 PF07079 DUF1347: Protein of u 92.4 18 0.00039 38.8 32.1 127 548-685 388-531 (549)
253 KOG3941 Intermediate in Toll s 92.3 1 2.2E-05 44.5 9.4 110 557-672 52-185 (406)
254 PF04184 ST7: ST7 protein; In 92.3 3.5 7.5E-05 44.6 14.1 150 582-752 180-334 (539)
255 COG1729 Uncharacterized protei 92.1 1.2 2.6E-05 44.4 9.9 97 572-672 144-241 (262)
256 PRK15331 chaperone protein Sic 91.9 0.8 1.7E-05 41.9 7.8 84 549-638 47-133 (165)
257 KOG4555 TPR repeat-containing 91.9 0.9 1.9E-05 39.3 7.5 26 687-712 123-148 (175)
258 COG1729 Uncharacterized protei 91.8 1.2 2.7E-05 44.3 9.6 102 612-714 144-250 (262)
259 KOG1941 Acetylcholine receptor 91.8 1.9 4.1E-05 44.2 11.0 215 518-738 20-271 (518)
260 smart00299 CLH Clathrin heavy 91.7 7.9 0.00017 35.0 14.6 123 542-690 10-136 (140)
261 KOG4648 Uncharacterized conser 91.2 0.94 2E-05 45.9 8.2 109 578-732 105-214 (536)
262 PF13281 DUF4071: Domain of un 91.2 7.2 0.00016 41.5 15.1 70 427-513 147-226 (374)
263 PF13428 TPR_14: Tetratricopep 91.2 0.31 6.8E-06 33.8 3.6 39 648-686 3-42 (44)
264 COG4105 ComL DNA uptake lipopr 91.1 15 0.00032 36.6 16.0 170 550-742 45-233 (254)
265 KOG2280 Vacuolar assembly/sort 90.3 39 0.00084 38.8 30.4 114 608-738 682-795 (829)
266 PF09205 DUF1955: Domain of un 90.1 7.8 0.00017 33.9 11.5 62 574-642 90-151 (161)
267 PRK12798 chemotaxis protein; R 89.7 32 0.00069 36.9 21.5 186 543-737 114-319 (421)
268 KOG1258 mRNA processing protei 89.5 40 0.00087 37.7 33.0 183 538-729 296-491 (577)
269 PF00637 Clathrin: Region in C 89.4 0.34 7.4E-06 44.3 3.3 130 287-436 11-140 (143)
270 KOG1585 Protein required for f 89.4 23 0.0005 34.8 16.1 207 499-737 22-251 (308)
271 PF10300 DUF3808: Protein of u 89.1 17 0.00036 40.8 16.9 86 546-637 274-374 (468)
272 PF13176 TPR_7: Tetratricopept 89.0 0.59 1.3E-05 30.7 3.4 25 715-739 1-25 (36)
273 PF09613 HrpB1_HrpK: Bacterial 89.0 10 0.00022 34.8 12.2 92 616-711 16-109 (160)
274 PF13181 TPR_8: Tetratricopept 88.3 0.54 1.2E-05 30.2 2.8 31 681-711 3-33 (34)
275 PF04097 Nic96: Nup93/Nic96; 88.2 58 0.0013 38.0 23.2 210 222-448 116-354 (613)
276 PF13170 DUF4003: Protein of u 88.0 9.6 0.00021 39.5 13.1 130 519-656 77-227 (297)
277 PF13176 TPR_7: Tetratricopept 87.7 0.95 2.1E-05 29.7 3.7 27 572-598 1-27 (36)
278 PF00637 Clathrin: Region in C 87.6 0.3 6.5E-06 44.7 1.7 88 390-480 11-98 (143)
279 COG5107 RNA14 Pre-mRNA 3'-end 87.2 46 0.001 35.7 35.1 79 39-121 39-117 (660)
280 PF02259 FAT: FAT domain; Int 87.1 47 0.001 35.6 21.5 149 567-724 143-303 (352)
281 KOG4234 TPR repeat-containing 86.9 3.4 7.3E-05 38.9 7.9 61 682-742 137-197 (271)
282 PF10300 DUF3808: Protein of u 86.7 23 0.00049 39.8 16.1 161 574-742 192-376 (468)
283 PF06552 TOM20_plant: Plant sp 86.6 12 0.00027 34.8 11.3 46 695-747 96-141 (186)
284 PF00515 TPR_1: Tetratricopept 86.5 1.3 2.8E-05 28.4 3.8 29 571-599 2-30 (34)
285 COG4105 ComL DNA uptake lipopr 86.3 38 0.00081 33.8 17.4 139 576-742 40-196 (254)
286 PF02259 FAT: FAT domain; Int 86.3 27 0.00058 37.5 16.4 65 678-742 145-213 (352)
287 PF04053 Coatomer_WDAD: Coatom 86.2 6.1 0.00013 43.6 11.0 106 455-600 298-403 (443)
288 COG3629 DnrI DNA-binding trans 86.2 3.5 7.6E-05 41.8 8.4 81 539-619 153-236 (280)
289 KOG4279 Serine/threonine prote 85.7 10 0.00023 42.9 12.1 192 455-712 204-399 (1226)
290 KOG2610 Uncharacterized conser 85.4 11 0.00024 38.6 11.1 151 465-638 116-275 (491)
291 PF14853 Fis1_TPR_C: Fis1 C-te 84.9 2 4.3E-05 31.1 4.3 33 683-715 5-37 (53)
292 PRK09687 putative lyase; Provi 84.6 52 0.0011 33.9 25.6 76 536-621 203-278 (280)
293 COG2976 Uncharacterized protei 84.3 33 0.00073 32.5 13.0 123 573-711 57-191 (207)
294 PF09613 HrpB1_HrpK: Bacterial 84.1 4.6 9.9E-05 37.0 7.3 53 691-743 22-74 (160)
295 COG3629 DnrI DNA-binding trans 83.9 4 8.6E-05 41.4 7.6 61 681-741 155-215 (280)
296 PF08631 SPO22: Meiosis protei 83.3 59 0.0013 33.5 22.2 93 506-600 86-187 (278)
297 KOG0276 Vesicle coat complex C 82.5 16 0.00034 40.6 11.6 148 551-738 598-746 (794)
298 KOG2066 Vacuolar assembly/sort 82.1 1.1E+02 0.0023 35.6 22.5 47 220-266 395-441 (846)
299 KOG1920 IkappaB kinase complex 82.1 1.3E+02 0.0029 36.7 22.5 137 546-702 915-1062(1265)
300 TIGR02561 HrpB1_HrpK type III 81.7 5.9 0.00013 35.6 6.9 52 692-743 23-74 (153)
301 PF07721 TPR_4: Tetratricopept 81.1 2 4.3E-05 25.7 2.7 24 714-737 2-25 (26)
302 PRK10941 hypothetical protein; 80.9 4.1 8.9E-05 41.4 6.5 62 681-742 183-244 (269)
303 PF04097 Nic96: Nup93/Nic96; 80.6 1.2E+02 0.0027 35.4 20.0 85 256-345 266-353 (613)
304 PF07719 TPR_2: Tetratricopept 79.8 3.4 7.4E-05 26.2 3.8 28 572-599 3-30 (34)
305 TIGR02508 type_III_yscG type I 79.5 20 0.00044 29.7 8.5 87 520-615 21-107 (115)
306 PF07035 Mic1: Colon cancer-as 79.0 41 0.00088 31.4 11.7 134 268-414 14-148 (167)
307 KOG4234 TPR repeat-containing 78.0 22 0.00048 33.7 9.5 93 621-715 106-204 (271)
308 PF08631 SPO22: Meiosis protei 77.9 89 0.0019 32.2 23.0 58 423-480 86-149 (278)
309 KOG1308 Hsp70-interacting prot 77.8 1.5 3.2E-05 44.8 2.2 89 660-748 128-217 (377)
310 COG3947 Response regulator con 77.8 85 0.0018 31.9 15.1 58 684-741 284-341 (361)
311 PF10602 RPN7: 26S proteasome 77.3 24 0.00053 33.4 10.2 95 572-673 38-140 (177)
312 KOG2114 Vacuolar assembly/sort 77.2 1.6E+02 0.0034 34.7 27.1 110 155-273 378-488 (933)
313 PRK11619 lytic murein transgly 76.9 1.6E+02 0.0035 34.6 30.9 128 583-721 254-384 (644)
314 COG4649 Uncharacterized protei 76.9 36 0.00077 31.6 10.2 118 228-346 69-194 (221)
315 COG1747 Uncharacterized N-term 76.5 93 0.002 34.2 14.8 162 247-416 65-235 (711)
316 PF13374 TPR_10: Tetratricopep 76.2 4.5 9.7E-05 27.1 3.7 28 571-598 3-30 (42)
317 PF13374 TPR_10: Tetratricopep 75.9 4.6 0.0001 27.1 3.8 28 714-741 3-30 (42)
318 PF10602 RPN7: 26S proteasome 75.5 18 0.00039 34.3 8.8 95 540-639 37-142 (177)
319 PF13170 DUF4003: Protein of u 75.3 86 0.0019 32.6 14.3 53 586-643 78-136 (297)
320 smart00028 TPR Tetratricopepti 74.9 5.3 0.00011 24.2 3.7 31 681-711 3-33 (34)
321 KOG0276 Vesicle coat complex C 74.3 19 0.00041 40.0 9.4 151 432-636 597-747 (794)
322 KOG3364 Membrane protein invol 74.2 26 0.00056 31.0 8.4 25 687-711 79-103 (149)
323 PRK09687 putative lyase; Provi 74.2 1.1E+02 0.0024 31.5 24.2 119 538-672 141-260 (280)
324 KOG1585 Protein required for f 74.1 96 0.0021 30.7 17.2 145 539-702 91-250 (308)
325 PF13431 TPR_17: Tetratricopep 73.8 3.8 8.2E-05 26.4 2.6 31 307-339 3-33 (34)
326 PF13181 TPR_8: Tetratricopept 73.3 5.8 0.00013 25.2 3.5 27 572-598 3-29 (34)
327 COG2909 MalT ATP-dependent tra 73.1 2.1E+02 0.0045 34.1 18.1 201 551-753 427-658 (894)
328 TIGR02508 type_III_yscG type I 73.1 35 0.00075 28.4 8.3 84 200-286 22-105 (115)
329 TIGR02561 HrpB1_HrpK type III 73.0 74 0.0016 28.9 12.0 86 621-709 21-107 (153)
330 KOG4570 Uncharacterized conser 72.2 23 0.00049 36.1 8.6 98 533-639 58-164 (418)
331 PF13174 TPR_6: Tetratricopept 72.2 4 8.6E-05 25.7 2.5 28 715-742 2-29 (33)
332 PF14853 Fis1_TPR_C: Fis1 C-te 71.9 25 0.00054 25.5 6.6 50 716-791 4-53 (53)
333 PF13174 TPR_6: Tetratricopept 69.8 6.4 0.00014 24.6 3.1 31 682-712 3-33 (33)
334 PF11207 DUF2989: Protein of u 69.6 21 0.00045 34.2 7.5 76 656-733 117-198 (203)
335 KOG1586 Protein required for f 69.5 1.2E+02 0.0026 29.9 12.6 92 624-715 128-231 (288)
336 PF07575 Nucleopor_Nup85: Nup8 69.2 2.2E+02 0.0048 33.0 17.5 62 571-639 373-434 (566)
337 COG4455 ImpE Protein of avirul 68.9 87 0.0019 30.4 11.2 129 572-714 3-140 (273)
338 KOG4642 Chaperone-dependent E3 68.5 18 0.00038 35.4 6.8 82 660-741 24-106 (284)
339 KOG4648 Uncharacterized conser 68.5 10 0.00022 38.9 5.4 84 654-737 105-189 (536)
340 KOG0292 Vesicle coat complex C 68.2 4.3 9.2E-05 46.7 3.1 114 583-734 606-719 (1202)
341 PF06552 TOM20_plant: Plant sp 67.9 12 0.00026 35.0 5.3 45 695-739 51-99 (186)
342 KOG0403 Neoplastic transformat 67.6 1.9E+02 0.004 31.4 17.0 71 323-398 513-586 (645)
343 PF07035 Mic1: Colon cancer-as 67.5 1.1E+02 0.0024 28.6 15.0 56 542-597 92-147 (167)
344 PF02284 COX5A: Cytochrome c o 67.4 35 0.00077 28.5 7.3 60 588-654 28-87 (108)
345 cd00923 Cyt_c_Oxidase_Va Cytoc 66.3 33 0.00072 28.3 6.9 60 588-654 25-84 (103)
346 cd00923 Cyt_c_Oxidase_Va Cytoc 66.3 27 0.00059 28.8 6.4 62 57-121 22-84 (103)
347 KOG4507 Uncharacterized conser 65.2 21 0.00045 39.5 7.2 100 622-724 619-721 (886)
348 PF13929 mRNA_stabil: mRNA sta 65.0 1.1E+02 0.0024 31.2 11.9 52 536-587 199-255 (292)
349 PRK15180 Vi polysaccharide bio 64.8 40 0.00086 36.4 9.0 99 581-688 334-434 (831)
350 KOG1550 Extracellular protein 64.5 2E+02 0.0043 33.2 15.8 159 581-751 260-435 (552)
351 KOG4570 Uncharacterized conser 64.2 30 0.00065 35.3 7.7 98 111-213 62-165 (418)
352 PF13934 ELYS: Nuclear pore co 63.8 90 0.0019 31.0 11.2 106 573-693 79-186 (226)
353 PF14561 TPR_20: Tetratricopep 62.9 14 0.0003 30.4 4.4 44 699-742 8-51 (90)
354 PHA02875 ankyrin repeat protei 62.8 2.4E+02 0.0052 31.0 17.1 211 49-283 6-230 (413)
355 KOG1498 26S proteasome regulat 62.3 1.4E+02 0.003 31.8 12.2 109 651-764 136-263 (439)
356 KOG0686 COP9 signalosome, subu 62.3 2.3E+02 0.0049 30.5 14.4 59 540-598 151-215 (466)
357 KOG1464 COP9 signalosome, subu 61.9 1.8E+02 0.0039 29.2 16.6 194 331-561 39-253 (440)
358 KOG0376 Serine-threonine phosp 61.7 23 0.0005 38.4 6.8 84 657-740 15-99 (476)
359 PF09477 Type_III_YscG: Bacter 61.2 87 0.0019 26.5 8.5 88 519-615 21-108 (116)
360 PF13762 MNE1: Mitochondrial s 61.1 55 0.0012 29.6 8.2 78 115-193 41-128 (145)
361 KOG3824 Huntingtin interacting 60.8 25 0.00054 35.6 6.4 57 658-714 128-185 (472)
362 KOG2063 Vacuolar assembly/sort 60.4 3.8E+02 0.0082 32.5 23.8 190 437-671 494-709 (877)
363 PF13929 mRNA_stabil: mRNA sta 60.3 1.7E+02 0.0037 30.0 12.2 71 407-477 187-263 (292)
364 KOG0890 Protein kinase of the 59.1 6E+02 0.013 34.3 27.8 280 423-743 1422-1732(2382)
365 KOG1258 mRNA processing protei 58.9 3.1E+02 0.0068 31.0 27.1 181 419-624 295-489 (577)
366 PRK10941 hypothetical protein; 58.7 45 0.00098 34.0 8.2 65 651-715 186-251 (269)
367 PF04910 Tcf25: Transcriptiona 58.6 2.6E+02 0.0057 30.1 16.2 91 617-710 110-224 (360)
368 PF10345 Cohesin_load: Cohesin 57.8 3.7E+02 0.008 31.5 28.8 88 361-448 372-480 (608)
369 PF14561 TPR_20: Tetratricopep 57.6 63 0.0014 26.6 7.4 65 675-739 18-85 (90)
370 COG1747 Uncharacterized N-term 57.4 3.1E+02 0.0067 30.5 18.7 165 537-714 64-240 (711)
371 PF11768 DUF3312: Protein of u 56.1 94 0.002 34.7 10.4 58 543-600 412-474 (545)
372 PF15015 NYD-SP12_N: Spermatog 55.5 92 0.002 33.3 9.7 83 735-831 309-395 (569)
373 PF02284 COX5A: Cytochrome c o 55.2 43 0.00093 28.0 5.8 62 59-122 27-88 (108)
374 COG4649 Uncharacterized protei 55.0 1.8E+02 0.004 27.2 15.3 122 580-707 68-195 (221)
375 KOG2063 Vacuolar assembly/sort 54.7 3.7E+02 0.0081 32.5 15.6 28 250-277 506-533 (877)
376 PF04190 DUF410: Protein of un 54.3 2.5E+02 0.0055 28.5 15.8 83 537-639 88-170 (260)
377 KOG3824 Huntingtin interacting 54.1 16 0.00035 36.9 3.9 55 622-679 128-184 (472)
378 PF09477 Type_III_YscG: Bacter 53.3 98 0.0021 26.2 7.6 78 199-278 22-99 (116)
379 KOG1586 Protein required for f 52.6 2.4E+02 0.0053 27.8 12.3 33 616-649 160-192 (288)
380 smart00028 TPR Tetratricopepti 51.4 23 0.00049 21.1 3.3 27 572-598 3-29 (34)
381 KOG1464 COP9 signalosome, subu 51.3 2.7E+02 0.0058 28.0 12.5 235 434-692 40-317 (440)
382 KOG3807 Predicted membrane pro 51.0 87 0.0019 32.2 8.4 169 515-719 227-402 (556)
383 PF07163 Pex26: Pex26 protein; 50.8 1.2E+02 0.0026 30.7 9.2 90 577-672 90-184 (309)
384 PF11207 DUF2989: Protein of u 50.4 90 0.002 30.0 8.1 74 587-666 123-198 (203)
385 PF10579 Rapsyn_N: Rapsyn N-te 50.4 28 0.00061 27.5 3.9 47 622-668 18-65 (80)
386 KOG3364 Membrane protein invol 49.8 1.9E+02 0.0042 25.8 9.9 45 695-739 51-97 (149)
387 PRK11619 lytic murein transgly 49.2 5.1E+02 0.011 30.5 36.5 184 541-746 314-509 (644)
388 COG4455 ImpE Protein of avirul 48.4 58 0.0012 31.6 6.4 66 649-714 4-70 (273)
389 PF09986 DUF2225: Uncharacteri 48.2 72 0.0016 31.3 7.5 63 681-743 120-195 (214)
390 smart00386 HAT HAT (Half-A-TPR 48.2 24 0.00053 21.7 3.0 29 693-721 1-29 (33)
391 KOG0545 Aryl-hydrocarbon recep 48.0 99 0.0022 30.5 8.0 54 689-742 240-293 (329)
392 PF10345 Cohesin_load: Cohesin 46.7 5.4E+02 0.012 30.1 31.0 58 683-740 538-604 (608)
393 COG5191 Uncharacterized conser 46.4 40 0.00087 34.3 5.3 77 645-721 106-184 (435)
394 COG4976 Predicted methyltransf 46.4 28 0.0006 33.9 4.0 59 655-713 4-63 (287)
395 KOG2471 TPR repeat-containing 45.6 4.2E+02 0.0091 29.3 12.8 210 515-749 28-273 (696)
396 PRK13800 putative oxidoreducta 44.9 7E+02 0.015 30.9 21.5 140 537-694 696-836 (897)
397 PF07720 TPR_3: Tetratricopept 44.6 38 0.00082 22.2 3.3 31 681-711 3-35 (36)
398 PF13762 MNE1: Mitochondrial s 44.4 2.5E+02 0.0054 25.5 10.3 79 218-296 40-128 (145)
399 KOG2659 LisH motif-containing 43.8 3.3E+02 0.0071 26.8 11.4 95 569-671 25-128 (228)
400 PF04910 Tcf25: Transcriptiona 43.5 1.4E+02 0.003 32.2 9.4 97 645-741 39-167 (360)
401 TIGR03504 FimV_Cterm FimV C-te 43.4 39 0.00086 23.4 3.4 27 717-743 3-29 (44)
402 COG5159 RPN6 26S proteasome re 43.2 3.8E+02 0.0082 27.3 12.9 51 578-633 11-68 (421)
403 PF10366 Vps39_1: Vacuolar sor 41.9 1.8E+02 0.0038 24.9 8.0 28 571-598 40-67 (108)
404 PHA02875 ankyrin repeat protei 41.8 4.4E+02 0.0094 28.9 13.6 78 361-447 10-91 (413)
405 PF08424 NRDE-2: NRDE-2, neces 41.4 4.5E+02 0.0098 27.7 13.7 61 586-655 47-108 (321)
406 PRK14015 pepN aminopeptidase N 41.3 6.6E+02 0.014 30.9 15.5 119 615-734 719-845 (875)
407 TIGR02414 pepN_proteo aminopep 40.9 6.4E+02 0.014 30.9 15.2 119 615-734 709-835 (863)
408 PF15161 Neuropep_like: Neurop 40.5 12 0.00027 26.6 0.6 18 836-854 10-27 (65)
409 KOG1811 Predicted Zn2+-binding 39.8 6E+02 0.013 28.7 13.5 99 646-748 556-655 (1141)
410 TIGR03504 FimV_Cterm FimV C-te 39.1 60 0.0013 22.5 3.8 25 576-600 5-29 (44)
411 PF15469 Sec5: Exocyst complex 39.0 1.7E+02 0.0038 27.7 8.5 24 616-639 92-115 (182)
412 PRK15180 Vi polysaccharide bio 38.4 3.6E+02 0.0078 29.6 11.0 86 657-743 334-421 (831)
413 PF11663 Toxin_YhaV: Toxin wit 38.3 41 0.00089 29.7 3.5 33 156-190 106-138 (140)
414 PF10366 Vps39_1: Vacuolar sor 38.3 1.6E+02 0.0036 25.1 7.3 28 249-276 40-67 (108)
415 PF11848 DUF3368: Domain of un 37.5 99 0.0022 21.8 4.8 35 155-189 12-46 (48)
416 PF10579 Rapsyn_N: Rapsyn N-te 37.5 88 0.0019 24.9 4.9 48 582-633 18-66 (80)
417 COG2178 Predicted RNA-binding 37.0 2.6E+02 0.0056 26.7 8.7 56 545-600 35-99 (204)
418 cd00280 TRFH Telomeric Repeat 35.9 1.5E+02 0.0032 28.0 6.9 30 685-715 117-146 (200)
419 KOG4077 Cytochrome c oxidase, 35.7 1.8E+02 0.0039 25.5 6.8 60 588-654 67-126 (149)
420 PF06957 COPI_C: Coatomer (COP 35.3 1.1E+02 0.0025 33.3 7.1 32 681-712 302-333 (422)
421 PF11846 DUF3366: Domain of un 35.3 1.1E+02 0.0023 29.5 6.5 32 641-672 139-170 (193)
422 PF06957 COPI_C: Coatomer (COP 35.2 4.3E+02 0.0093 29.0 11.3 159 3-178 163-333 (422)
423 smart00638 LPD_N Lipoprotein N 34.4 7.9E+02 0.017 28.5 20.6 63 111-176 308-371 (574)
424 PF14689 SPOB_a: Sensor_kinase 34.2 35 0.00076 25.7 2.2 22 576-597 29-50 (62)
425 KOG0545 Aryl-hydrocarbon recep 34.1 2.1E+02 0.0046 28.4 7.8 64 649-712 233-297 (329)
426 COG0790 FOG: TPR repeat, SEL1 33.5 5.5E+02 0.012 26.4 16.8 47 694-743 206-267 (292)
427 PF14689 SPOB_a: Sensor_kinase 33.4 99 0.0022 23.2 4.6 32 608-639 21-52 (62)
428 PF11848 DUF3368: Domain of un 33.2 1.1E+02 0.0024 21.6 4.5 35 257-291 11-45 (48)
429 COG3947 Response regulator con 33.1 1.9E+02 0.0041 29.6 7.5 58 574-637 283-340 (361)
430 KOG4642 Chaperone-dependent E3 32.6 4.4E+02 0.0096 26.2 9.7 82 549-637 20-105 (284)
431 PF13934 ELYS: Nuclear pore co 32.6 5.1E+02 0.011 25.7 11.4 115 551-679 90-205 (226)
432 COG5159 RPN6 26S proteasome re 32.5 5.6E+02 0.012 26.2 10.9 33 254-286 9-41 (421)
433 PRK09169 hypothetical protein; 32.4 1.5E+03 0.032 31.0 43.6 533 148-729 125-763 (2316)
434 KOG2422 Uncharacterized conser 32.3 8E+02 0.017 27.9 13.4 90 617-710 349-450 (665)
435 PRK10564 maltose regulon perip 32.0 66 0.0014 33.0 4.4 38 250-287 259-296 (303)
436 PRK10564 maltose regulon perip 32.0 66 0.0014 33.0 4.4 41 147-187 259-299 (303)
437 cd08819 CARD_MDA5_2 Caspase ac 31.7 2.2E+02 0.0048 23.2 6.4 38 331-369 48-85 (88)
438 PF08225 Antimicrobial19: Pseu 31.6 26 0.00056 19.4 0.8 12 843-854 10-21 (23)
439 TIGR02710 CRISPR-associated pr 31.6 5.4E+02 0.012 27.8 11.2 52 620-672 140-197 (380)
440 PF11768 DUF3312: Protein of u 31.6 1.5E+02 0.0033 33.2 7.3 57 221-277 412-473 (545)
441 cd08819 CARD_MDA5_2 Caspase ac 31.2 2.4E+02 0.0052 23.0 6.5 65 97-165 22-86 (88)
442 KOG4521 Nuclear pore complex, 30.4 1.1E+03 0.023 29.6 14.0 19 547-565 928-946 (1480)
443 COG4941 Predicted RNA polymera 29.8 6.8E+02 0.015 26.3 11.0 129 567-713 261-399 (415)
444 KOG2034 Vacuolar sorting prote 29.2 1.1E+03 0.023 28.5 23.6 417 153-658 366-830 (911)
445 COG2909 MalT ATP-dependent tra 29.1 1.1E+03 0.024 28.5 23.8 255 432-707 426-725 (894)
446 KOG0991 Replication factor C, 28.8 5.9E+02 0.013 25.3 10.1 98 514-620 169-282 (333)
447 COG0735 Fur Fe2+/Zn2+ uptake r 28.6 1.5E+02 0.0033 26.9 5.9 56 63-119 7-62 (145)
448 KOG4814 Uncharacterized conser 28.6 3.4E+02 0.0075 31.0 9.3 85 658-742 366-457 (872)
449 PHA02537 M terminase endonucle 28.0 4.7E+02 0.01 26.0 9.4 135 541-712 66-211 (230)
450 PF00244 14-3-3: 14-3-3 protei 27.3 4.2E+02 0.009 26.5 9.2 50 695-744 142-200 (236)
451 COG4785 NlpI Lipoprotein NlpI, 26.8 6.2E+02 0.013 24.9 14.7 63 418-480 95-161 (297)
452 PF07064 RIC1: RIC1; InterPro 26.5 6.9E+02 0.015 25.4 12.0 26 251-276 85-110 (258)
453 PF04090 RNA_pol_I_TF: RNA pol 25.9 5.1E+02 0.011 25.0 8.9 43 681-723 141-188 (199)
454 PF11525 CopK: Copper resistan 25.9 24 0.00053 26.7 0.2 21 858-878 8-28 (73)
455 PF07163 Pex26: Pex26 protein; 25.3 7.5E+02 0.016 25.4 12.9 117 50-168 43-181 (309)
456 KOG0551 Hsp90 co-chaperone CNS 25.3 2.8E+02 0.0061 29.0 7.4 90 648-737 83-177 (390)
457 COG2912 Uncharacterized conser 24.9 1.8E+02 0.0039 29.5 6.0 57 683-739 185-241 (269)
458 PF12862 Apc5: Anaphase-promot 24.8 1.8E+02 0.0038 24.0 5.2 26 716-741 44-69 (94)
459 KOG1550 Extracellular protein 24.1 1.1E+03 0.025 27.0 18.1 84 258-346 259-355 (552)
460 COG5187 RPN7 26S proteasome re 23.9 3E+02 0.0066 28.0 7.1 27 681-707 117-143 (412)
461 KOG1524 WD40 repeat-containing 23.7 3.2E+02 0.0069 30.4 7.8 88 646-737 573-668 (737)
462 PF12069 DUF3549: Protein of u 23.7 8.9E+02 0.019 25.7 13.8 91 220-313 169-260 (340)
463 PF01347 Vitellogenin_N: Lipop 23.4 9.9E+02 0.021 27.9 13.1 56 115-172 348-405 (618)
464 PF11846 DUF3366: Domain of un 23.4 2.1E+02 0.0046 27.4 6.3 34 606-639 140-173 (193)
465 PF09670 Cas_Cas02710: CRISPR- 22.4 7.1E+02 0.015 27.0 10.6 51 582-638 143-197 (379)
466 KOG3507 DNA-directed RNA polym 22.4 26 0.00057 25.4 -0.2 12 838-849 19-30 (62)
467 PF08311 Mad3_BUB1_I: Mad3/BUB 22.4 5.4E+02 0.012 22.7 9.1 44 587-635 80-124 (126)
468 COG2976 Uncharacterized protei 22.1 7.2E+02 0.016 24.0 12.6 89 512-600 97-189 (207)
469 PF14669 Asp_Glu_race_2: Putat 21.9 7.1E+02 0.015 23.9 12.3 159 379-564 1-206 (233)
470 PF11838 ERAP1_C: ERAP1-like C 21.6 9.3E+02 0.02 25.1 16.0 101 622-723 142-246 (324)
471 cd08326 CARD_CASP9 Caspase act 21.3 2.4E+02 0.0052 22.8 5.0 41 329-369 40-80 (84)
472 PF10255 Paf67: RNA polymerase 20.7 3.7E+02 0.0081 29.3 7.8 58 541-598 124-192 (404)
473 PF04034 DUF367: Domain of unk 20.4 4.7E+02 0.01 23.1 6.8 24 649-672 69-92 (127)
474 KOG4077 Cytochrome c oxidase, 20.4 4.1E+02 0.009 23.4 6.3 58 267-326 68-125 (149)
475 COG4976 Predicted methyltransf 20.3 1.5E+02 0.0033 29.1 4.2 54 690-743 6-59 (287)
476 TIGR01503 MthylAspMut_E methyl 20.1 2.2E+02 0.0049 31.2 5.9 124 516-651 66-216 (480)
477 KOG0376 Serine-threonine phosp 20.1 1.7E+02 0.0037 32.1 5.0 101 579-690 13-116 (476)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-155 Score=1394.53 Aligned_cols=811 Identities=37% Similarity=0.678 Sum_probs=799.1
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHH
Q 002772 37 SQTRCKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVA 116 (882)
Q Consensus 37 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 116 (882)
++.++..++|.++.+|++.|++.+|..+|+.|...|+.|+..+|..++.+|.+.+.+..|.++|..+.+.+.. ++..++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 124 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS-LGVRLG 124 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC-CCchHH
Confidence 3566778899999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred hHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcc
Q 002772 117 NTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRR 196 (882)
Q Consensus 117 ~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 196 (882)
|+||++|+++| +++.|.++|++|++||+++||+||++|++.|++++|+++|++|...|+.||.+||+++|++|+..
T Consensus 125 n~li~~~~~~g-~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~--- 200 (857)
T PLN03077 125 NAMLSMFVRFG-ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI--- 200 (857)
T ss_pred HHHHHHHHhCC-ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc---
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhhhcC-CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHH
Q 002772 197 DGLRLGRQVHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMA 275 (882)
Q Consensus 197 ~~~~~~~~~~~~~~~~g-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 275 (882)
+++..++++|..+.+.| .+|+.++|+||.+|+++|++++|.++|++|++||.++||+||.+|++.|++++|+++|++|.
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHH
Q 002772 276 LRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNA 355 (882)
Q Consensus 276 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~ 355 (882)
+.|+.||..||+.++.+|++.|+++.|+++|..+.+.| +.+|..+||+||++|+++|++++|.++|++|..+|+++||+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 002772 356 MITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMG 435 (882)
Q Consensus 356 li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 435 (882)
||.+|++.|++++|+++|++| ...|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..+||+||++|+++|
T Consensus 360 li~~~~~~g~~~~A~~lf~~M-~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALM-EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHH-HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 999999999999999999999 8899999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhc
Q 002772 436 RIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCG 515 (882)
Q Consensus 436 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~ 515 (882)
++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|+
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~------------------~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL------------------TLKPNSVTLIAALSACA 500 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh------------------CCCCCHhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred CcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 002772 516 ALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKN 595 (882)
Q Consensus 516 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 595 (882)
+.|+++.++++|..+.+.|+.+|..++|+||++|+|+|++++|.++|+.+ .||+++||+||.+|+++|+.++|+++|++
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCC
Q 002772 596 MVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPE 675 (882)
Q Consensus 596 m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~ 675 (882)
|.+.| ++||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..||++|+++|+|+|++++|.+++++|+.+
T Consensus 580 M~~~g-----~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~ 654 (857)
T PLN03077 580 MVESG-----VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT 654 (857)
T ss_pred HHHcC-----CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 99999 9999999999999999999999999999999977899999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEe
Q 002772 676 FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEF 755 (882)
Q Consensus 676 p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~ 755 (882)
|+.. +|++|+++|+.|||.+.|+.+++++++++|+++++|++|+|+|+..|+|++|.++++.|+++|++|+||+|||++
T Consensus 655 pd~~-~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~ 733 (857)
T PLN03077 655 PDPA-VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733 (857)
T ss_pred CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhHHHHHHHHhhhcCCCCCeEEE
Q 002772 756 GDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRV 835 (882)
Q Consensus 756 ~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~se~la~~~~~~~~~~~~~~~~ 835 (882)
++++|.|++||.+||+.++||.+|++|..+|++.||+||+..++++ ++++|+..+++||||||+|||||+||+|+||||
T Consensus 734 ~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~-~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i 812 (857)
T PLN03077 734 KGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE-IEVSKDDIFCGHSERLAIAFGLINTVPGMPIWV 812 (857)
T ss_pred CCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccc-cHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEE
Confidence 9999999999999999999999999999999999999999998854 778999999999999999999999999999999
Q ss_pred EcccccCcchhHhhhhhhcccceeEEEecCCccccccCccccCCC
Q 002772 836 AKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGD 880 (882)
Q Consensus 836 ~~n~~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~ 880 (882)
+||||||+|||+++||||++++|||||||.+|||||+||+|||||
T Consensus 813 ~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 813 TKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred eCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.2e-125 Score=1104.27 Aligned_cols=613 Identities=34% Similarity=0.624 Sum_probs=604.7
Q ss_pred CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHH
Q 002772 245 DRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRG-IKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGS 323 (882)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 323 (882)
.++.++|+.+|.+|++.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|+++|..+.+.| +.+|..++|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHH
Confidence 3577899999999999999999999999999864 78999999999999999999999999999999999 999999999
Q ss_pred HHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCc
Q 002772 324 ALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFP 403 (882)
Q Consensus 324 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~ 403 (882)
.|+++|+++|++++|.++|++|+++|+++||++|.+|++.|++++|+++|++| ...|+.||..||+.++.+|++.++.+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHH-HHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999 77999999999999999999999999
Q ss_pred chhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Q 002772 404 DKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEE 483 (882)
Q Consensus 404 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 483 (882)
.+.++|..+.+.|+.+|..+||+||++|+++|++++|.++|++|..+|+++||+||.+|++.|+.++|+++|++|.+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~--- 318 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD--- 318 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 002772 484 EKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFD 563 (882)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 563 (882)
. |+.||..||++++.+|++.|.+++|.++|..+.+.|+.+|..+||+||++|+|+|++++|.++|+
T Consensus 319 ~--------------g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 319 S--------------GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred c--------------CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 6 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 002772 564 LMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIE 643 (882)
Q Consensus 564 ~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 643 (882)
+|..||+.+||+||.+|+++|+.++|+++|++|.+.| +.||.+||++++.+|++.|++++|.++|+.|.+++|+.
T Consensus 385 ~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-----~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG-----VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred hCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999888999
Q ss_pred CChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 002772 644 PSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIY 723 (882)
Q Consensus 644 p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 723 (882)
|+..||++||++|+|+|++++|.+++++|+..|+.. +|++|+.+|+.+|+++.|+.+++++++++|++...|+.|+++|
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~-~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN-MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccc
Q 002772 724 SSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVN 803 (882)
Q Consensus 724 ~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~ 803 (882)
++.|+|++|.++++.|+++|++|.||+|||++++++|.|++||.+||+.++|+.+|++|..+|++.||+||+.+++||++
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~ 618 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVD 618 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHHHHHHhhhcCCCCCeEEEEcccccCcchhHhhhhhhcccceeEEEecCCccccccCccccCCCCC
Q 002772 804 EEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882 (882)
Q Consensus 804 ~~~~~~~~~~~se~la~~~~~~~~~~~~~~~~~~n~~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~~~ 882 (882)
+++|+..+++||||||+|||||+||+|+||||+||||||+|||+|+||||++++|||||||.+|||||+||+|||||||
T Consensus 619 ~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 619 EDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.7e-84 Score=775.17 Aligned_cols=577 Identities=31% Similarity=0.541 Sum_probs=561.6
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHh
Q 002772 38 QTRCKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVAN 117 (882)
Q Consensus 38 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 117 (882)
+.||+++||.+|.+|++.|++++|+.+|++|...|+.||..||+.+|++|+..+++..+.++|..+.+.|+. ++..++|
T Consensus 148 ~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~n 226 (857)
T PLN03077 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE-LDVDVVN 226 (857)
T ss_pred CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC-cccchHh
Confidence 568999999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCccc
Q 002772 118 TLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRD 197 (882)
Q Consensus 118 ~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 197 (882)
+||.+|+++| ++++|.++|++|++||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|+.. +
T Consensus 227 ~Li~~y~k~g-~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~---g 302 (857)
T PLN03077 227 ALITMYVKCG-DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL---G 302 (857)
T ss_pred HHHHHHhcCC-CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc---C
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred chHHHHHHHHhhhhcC-CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002772 198 GLRLGRQVHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMAL 276 (882)
Q Consensus 198 ~~~~~~~~~~~~~~~g-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 276 (882)
+++.++++|..+.+.| .+|..+||+||.+|+++|++++|.++|++|.+||.++||+||.+|++.|++++|+++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHH
Q 002772 277 RGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAM 356 (882)
Q Consensus 277 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 356 (882)
.|+.||..||++++.+|++.|+++.|.++|+.+.+.| +.++..++|+||++|+++|++++|.++|++|.++|+++||+|
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~m 461 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG-LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 002772 357 ITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGR 436 (882)
Q Consensus 357 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 436 (882)
|.+|+++|+.++|+++|++| . .++.||..||+.+|.+|++.|+++.+.++|..+.+.|+.+|..++|+||++|+|+|+
T Consensus 462 i~~~~~~g~~~eA~~lf~~m-~-~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQM-L-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHH-H-hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 99999999999999999999 6 469999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcC
Q 002772 437 IEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGA 516 (882)
Q Consensus 437 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~ 516 (882)
+++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+ . |+.||.+||+.+|.+|++
T Consensus 540 ~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~---~--------------g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 540 MNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE---S--------------GVNPDEVTFISLLCACSR 601 (857)
T ss_pred HHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---c--------------CCCCCcccHHHHHHHHhh
Confidence 99999999999 89999999999999999999999999999998 6 999999999999999999
Q ss_pred cchHHHHHHHHHHHH-HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCChhhHHHHHHHHHccCChhHHHHHHH
Q 002772 517 LSALAKGKEIHAYAI-RNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-VRNVITWNVIIMAYGMHGEGQEVLELLK 594 (882)
Q Consensus 517 ~~~~~~a~~i~~~~~-~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~ 594 (882)
.|.+++|.++++.|. +.|+.|+..+|++++++|++.|++++|.+++++|+ +||..+|++|+.+|..+|+.+.+....+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999999999 78999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred HHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH
Q 002772 595 NMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDH 648 (882)
Q Consensus 595 ~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 648 (882)
++.+ +.|+ ...|..+.+.|+..|++++|.++.+.|.+. |+++++..
T Consensus 682 ~l~~-------l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~g~ 728 (857)
T PLN03077 682 HIFE-------LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDPGC 728 (857)
T ss_pred HHHh-------hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCCCc
Confidence 9988 4576 456777778999999999999999999997 99887644
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-70 Score=644.37 Aligned_cols=435 Identities=23% Similarity=0.377 Sum_probs=423.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHh
Q 002772 39 TRCKESWIESLRSEARSNQFREAILSYIEMTRSD-IQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVAN 117 (882)
Q Consensus 39 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 117 (882)
.++.++|+.+|.++.+.|++.+|+.+|+.|...+ +.||..+|+.++.+|++.++++.+.++|..|.+.|+. +|..++|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cchHHHH
Confidence 3456799999999999999999999999999864 7899999999999999999999999999999999999 8999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCccc
Q 002772 118 TLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRD 197 (882)
Q Consensus 118 ~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 197 (882)
.|+++|+++| ++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|+.. +
T Consensus 163 ~Li~~y~k~g-~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~---~ 238 (697)
T PLN03081 163 RVLLMHVKCG-MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL---G 238 (697)
T ss_pred HHHHHHhcCC-CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC---C
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred chHHHHHHHHhhhhcC-CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002772 198 GLRLGRQVHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMAL 276 (882)
Q Consensus 198 ~~~~~~~~~~~~~~~g-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 276 (882)
..+.++++|..+.+.| .+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHH
Q 002772 277 RGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAM 356 (882)
Q Consensus 277 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 356 (882)
.|+.||..||++++.+|++.|+++.|+++|..+.+.| +++|..++|+||++|+++|++++|.++|++|.++|+++||+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~l 397 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL 397 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHH-hCCCCchHHHHHHHHHHHhcC
Q 002772 357 ITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIK-LGLGRDRYVQNALMDMYSRMG 435 (882)
Q Consensus 357 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~y~~~g 435 (882)
|.+|++.|+.++|+++|++| ...|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|
T Consensus 398 I~~y~~~G~~~~A~~lf~~M-~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERM-IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 99999999999999999999 7899999999999999999999999999999999986 699999999999999999999
Q ss_pred ChHHHHHHHhhCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 002772 436 RIEISKTIFDDME-VRDTVSWNTMITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 436 ~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
++++|.++|++|. .|+..+|++|+.+|...|+.+.|..+++++.+
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 9999999999997 67889999999999999999999999998864
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-68 Score=623.34 Aligned_cols=524 Identities=15% Similarity=0.189 Sum_probs=469.0
Q ss_pred CCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHH
Q 002772 73 IQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMI 152 (882)
Q Consensus 73 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li 152 (882)
..++...|..++..|.+.|+++.|.++++.|.+.|+.+++...++.++..|.+.| .+++|.++|+.|+.||..+||.+|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456677888888888888888888888888888865477777888888888888 888888888888888888888888
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCC
Q 002772 153 ATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGR 232 (882)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~ 232 (882)
.+|++.|++++|+++|++|.+.|+.||..+ ||+||.+|+++|+
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~t-------------------------------------ynsLI~~y~k~G~ 487 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKL-------------------------------------YTTLISTCAKSGK 487 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHH-------------------------------------HHHHHHHHHhCcC
Confidence 888888888888888888888888887666 5777777888899
Q ss_pred hhHHHHHHhcCC----CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHH
Q 002772 233 VDDAKTLFKSFE----DRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAY 308 (882)
Q Consensus 233 ~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 308 (882)
+++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|..
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~e 567 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE 567 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH--hCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC----CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCC
Q 002772 309 ALR--NDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK----KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGL 382 (882)
Q Consensus 309 ~~~--~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~ 382 (882)
|.+ .| +.||..+|++||++|+++|++++|.++|+.|.+. +..+||++|.+|++.|++++|+++|++| ...|+
T Consensus 568 M~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM-~~~Gv 645 (1060)
T PLN03218 568 MKAETHP-IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGV 645 (1060)
T ss_pred HHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCC
Confidence 986 56 8899999999999999999999999999999865 4579999999999999999999999999 88999
Q ss_pred CCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC----CCCeeeHHHH
Q 002772 383 WPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME----VRDTVSWNTM 458 (882)
Q Consensus 383 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~l 458 (882)
.||..||+.++.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+|
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~L 725 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999995 7899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCc
Q 002772 459 ITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATD 538 (882)
Q Consensus 459 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 538 (882)
|.+|++.|++++|+++|++|.. . |+.||..||++++.+|++.|+++.|.++|..|.+.|+.||
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~---~--------------Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKR---L--------------GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---c--------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999998 6 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH----HhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHH
Q 002772 539 VVVGSALVDMY----AKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFI 614 (882)
Q Consensus 539 ~~~~~~li~~y----~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~ 614 (882)
..+|++|++++ .+++...++...|+.+...+...|+ ++|+.+|++|++.| +.||.+||+
T Consensus 789 ~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~G-----i~Pd~~T~~ 851 (1060)
T PLN03218 789 LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVYRETISAG-----TLPTMEVLS 851 (1060)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHHHHHHHCC-----CCCCHHHHH
Confidence 99999999874 4445554455555544444444554 56999999999999 999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCC
Q 002772 615 ALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMP 673 (882)
Q Consensus 615 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~ 673 (882)
.++.+++..+..+.+..+++.|... +..|+..+|++||+++++. .++|..++++|.
T Consensus 852 ~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 852 QVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 9998888888999998888888765 7888899999999998543 478999999983
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.8e-63 Score=583.04 Aligned_cols=548 Identities=17% Similarity=0.232 Sum_probs=478.5
Q ss_pred CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCccc-----HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhh
Q 002772 214 EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVS-----WNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIAS 288 (882)
Q Consensus 214 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 288 (882)
..+...|..++..++++|++++|+++|++|++++... ++.++.+|.+.|.+++|+++|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 6677788888899999999999999999999876654 45667779999999999999999975 99999999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccC----CCCceehHHHHHHHhcCC
Q 002772 289 VLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFIS----DKKIALWNAMITGYGQNE 364 (882)
Q Consensus 289 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g 364 (882)
+|.+|++.|+++.|.++|+.|.+.| +.||..+|++||.+|+++|++++|.++|++|. .+|+.+||+||.+|++.|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999 99999999999999999999999999999998 478899999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHH--hCCCCchHHHHHHHHHHHhcCChHHHHH
Q 002772 365 YDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIK--LGLGRDRYVQNALMDMYSRMGRIEISKT 442 (882)
Q Consensus 365 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 442 (882)
++++|+++|++| ...|+.||..||+.+|.+|++.|++++|.++|.+|.+ .|+.||..+|++||.+|+++|++++|.+
T Consensus 522 ~~eeAl~lf~~M-~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 522 QVAKAFGAYGIM-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999 8899999999999999999999999999999999986 6889999999999999999999999999
Q ss_pred HHhhCC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcc
Q 002772 443 IFDDME----VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALS 518 (882)
Q Consensus 443 ~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~ 518 (882)
+|+.|. .++..+||++|.+|++.|++++|+++|++|.+ . |+.||..||++++.+|++.|
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~---~--------------Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK---K--------------GVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c--------------CCCCCHHHHHHHHHHHHhCC
Confidence 999998 44678999999999999999999999999998 6 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHccCChhHHHHHHH
Q 002772 519 ALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP----VRNVITWNVIIMAYGMHGEGQEVLELLK 594 (882)
Q Consensus 519 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~ 594 (882)
++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 7999999999999999999999999999
Q ss_pred HHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh----ccC----------
Q 002772 595 NMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLG----RAG---------- 660 (882)
Q Consensus 595 ~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~----r~g---------- 660 (882)
+|.+.| +.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++|++++. +++
T Consensus 744 eM~~~G-----i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~ 817 (1060)
T PLN03218 744 EMKRLG-----LCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFD 817 (1060)
T ss_pred HHHHcC-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 999999 9999999999999999999999999999999987 99999999999997643 222
Q ss_pred ---------CHHHHHHHHHhC---CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHh-cCCCCCCchHHHHHHHHHHcC
Q 002772 661 ---------KVEDAYQLINMM---PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLF-LLEPDVASHYVLLSNIYSSAQ 727 (882)
Q Consensus 661 ---------~~~eA~~~~~~m---~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~-~l~p~~~~~~~~l~~~y~~~g 727 (882)
..++|..+|++| ...|+.. +|.+++.++...+..+.+...++... +-.+.+..+|..|.+.+ |
T Consensus 818 ~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~-T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~ 893 (1060)
T PLN03218 818 SGRPQIENKWTSWALMVYRETISAGTLPTME-VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---G 893 (1060)
T ss_pred ccccccccchHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---c
Confidence 346799999998 3679988 99999977777778888877776533 33455677888888876 4
Q ss_pred Cc-hHHHHHHHHHHhCCCccCCce---eEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccc
Q 002772 728 LW-DKAMDVRKKMKEMGVRKEPGC---SWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHN 801 (882)
Q Consensus 728 ~~-~~a~~~~~~m~~~g~~~~~~~---s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~ 801 (882)
++ ++|..++++|.+.|+.+.... .|. -.+|.|-.| ..--.+...|..|.......-..|.-...++.
T Consensus 894 ~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~---~d~~~~~~~----aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 894 EYDPRAFSLLEEAASLGVVPSVSFKKSPIV---IDAEELPVF----AAEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964 (1060)
T ss_pred cChHHHHHHHHHHHHcCCCCCcccccCceE---EEcccCcch----hHHHHHHHHHHHHHHHHhccCcCCcceeeecc
Confidence 44 589999999999999877642 232 123333222 11223455666666665432245654444555
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.7e-35 Score=363.61 Aligned_cols=659 Identities=10% Similarity=-0.011 Sum_probs=341.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHH
Q 002772 40 RCKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTL 119 (882)
Q Consensus 40 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 119 (882)
.+...|..+...+...|++++|...|++.....+ .+...+..+...+...|+++.|...++.+.+... .+.......
T Consensus 191 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ 267 (899)
T TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAP--NSPLAHYLK 267 (899)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCchHHHHH
Confidence 3455677777788888888888888888876542 3455666777777788888888888887777653 333333333
Q ss_pred HHHHHhcCCCHHHHHHHHhccCCC--C-ceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcc
Q 002772 120 VNMYGKCGSDMWDVYKVFDRITEK--D-QVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRR 196 (882)
Q Consensus 120 i~~y~~~g~~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 196 (882)
...+...| ++++|...|+...+. + ...+..+...+...|++++|...|+.+.+.. ..+...+..+...+...
T Consensus 268 ~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~--- 342 (899)
T TIGR02917 268 ALVDFQKK-NYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRL--- 342 (899)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC---
Confidence 33444556 677777776655432 1 1223333444555666666666666655432 11222333333444444
Q ss_pred cchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChHHHHHHHHH
Q 002772 197 DGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFED---RDLVSWNTIVSSLSQNDKFLEAVMFLRQ 273 (882)
Q Consensus 197 ~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 273 (882)
++.+.+...+..+....+.+..+++.+...|.+.|++++|.++|+.+.+ .+...|..+...+...|++++|++.|+.
T Consensus 343 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 343 GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 5555555555555554444555555555666666666666666655432 1233444444555555555555555555
Q ss_pred HHHCCC---------------------------------CCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchh
Q 002772 274 MALRGI---------------------------------KPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSF 320 (882)
Q Consensus 274 m~~~g~---------------------------------~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 320 (882)
+.+... .++..++..+...+...|+.++|.+.+..+++.. +.+..
T Consensus 423 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~ 500 (899)
T TIGR02917 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFP 500 (899)
T ss_pred HHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHH
Confidence 544321 2233344444444444444445554444444432 33334
Q ss_pred HHHHHHHHhhcCCChHHHHHHHhccCC---CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhh
Q 002772 321 VGSALVDMYCNCREVECGRRVFDFISD---KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACV 397 (882)
Q Consensus 321 ~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~ 397 (882)
.+..+...|...|++++|.+.|+++.. .+..++..+...+.+.|+.++|...|.++.. . -+.+...+..+...+.
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE-L-NPQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CccchhHHHHHHHHHH
Confidence 444444444444555555544444432 1233444444444455555555555544411 1 1112223334444444
Q ss_pred cCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC---CCCeeeHHHHHHHHHhcCCHHHHHHH
Q 002772 398 RSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME---VRDTVSWNTMITGYTICGQHGDALML 474 (882)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~ 474 (882)
..|+++.|..++..+.+.. +.+..++..+...|.+.|++++|...|+.+. ..+...|..+...|.+.|++++|...
T Consensus 579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555544322 3334445555555555555555555555443 11333444455555555555555555
Q ss_pred HHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 002772 475 LREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGC 554 (882)
Q Consensus 475 ~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~ 554 (882)
|+++.+ ..+.+..++..+...+...|+++.|.+++..+.+.. +.+...+..+...|.+.|+
T Consensus 658 ~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 658 LKRALE------------------LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHh------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence 555543 222233444455555555555555555555554443 2344445555555555555
Q ss_pred HHHHHHHHhhCC--CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHH
Q 002772 555 LNFARRVFDLMP--VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDL 632 (882)
Q Consensus 555 ~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~ 632 (882)
+++|.+.|+.+. .|+..++..++..+.+.|++++|.+.++++++.. +.+...+..+...|...|+.++|.++
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH------PNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 555555555543 3333445555555555555555555555555532 22344455555555555555555555
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 002772 633 FYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 633 ~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 711 (882)
|+++.+. -+++...+..+..++.+.|+ ++|+++++++ ...|+....|..+..++...|+.+.|...++++++.+|.
T Consensus 793 ~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 793 YRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5555542 23344555555555555555 5555555543 234444445555555555556666666666666666665
Q ss_pred CCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 712 VASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 712 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
++.++..++.+|.+.|++++|.+++++|
T Consensus 870 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 870 AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555556666666666666666555554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-34 Score=356.86 Aligned_cols=658 Identities=12% Similarity=0.076 Sum_probs=460.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHH
Q 002772 41 CKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLV 120 (882)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 120 (882)
+...|..+...+...|++.+|...++.+.... +++...+..+...+...|+++.|...+..+.+.. |.++.++..++
T Consensus 158 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~ 234 (899)
T TIGR02917 158 SLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR--PNNPAVLLALA 234 (899)
T ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 45578888899999999999999999988754 3455677778888889999999999999998876 47788889999
Q ss_pred HHHHhcCCCHHHHHHHHhccCC--C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChh-hHHHHHHHhccCCcc
Q 002772 121 NMYGKCGSDMWDVYKVFDRITE--K-DQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSF-TLVSVALACSNLSRR 196 (882)
Q Consensus 121 ~~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~ 196 (882)
..+...| ++++|...|+.+.+ | +...+......+...|++++|+..|+.+.+.+ |+.. .+..+-..+...
T Consensus 235 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~--- 308 (899)
T TIGR02917 235 TILIEAG-EFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQL--- 308 (899)
T ss_pred HHHHHcC-CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHc---
Confidence 9999999 99999999988754 2 33334444455667899999999999998754 4422 222233345556
Q ss_pred cchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChHHHHHHHHH
Q 002772 197 DGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFED---RDLVSWNTIVSSLSQNDKFLEAVMFLRQ 273 (882)
Q Consensus 197 ~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 273 (882)
++++.+...+..+++..+.+...+..+...+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|.+.|++
T Consensus 309 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 309 GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8999999999999988877788889999999999999999999998764 3566889999999999999999999999
Q ss_pred HHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---Cc
Q 002772 274 MALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---KI 350 (882)
Q Consensus 274 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~ 350 (882)
+.+... .+...+..+...+...|+.+.|.+.+..+.+.. +........++..|.+.|++++|..+++.+... +.
T Consensus 389 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 465 (899)
T TIGR02917 389 ATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465 (899)
T ss_pred HHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Confidence 987532 234456666667777888888888887777654 333444555566666666666666666665432 33
Q ss_pred eehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCC-cchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHH
Q 002772 351 ALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPN-ATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMD 429 (882)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 429 (882)
.+|+.+...|...|++++|.+.|+++.. ..|+ ...+..+...+...|++++|.+.+..+.+.. +.+..++..+..
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 541 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALS---IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAG 541 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 4566666666666666666666666521 2222 2233444444555555555555555555433 223444444445
Q ss_pred HHHhcCChHHHHHHHhh----------------------------------CC---CCCeeeHHHHHHHHHhcCCHHHHH
Q 002772 430 MYSRMGRIEISKTIFDD----------------------------------ME---VRDTVSWNTMITGYTICGQHGDAL 472 (882)
Q Consensus 430 ~y~~~g~~~~A~~~~~~----------------------------------m~---~~~~~~~~~li~~~~~~g~~~~A~ 472 (882)
.|.+.|+.++|...|++ +. ..+...|..+...|...|++++|+
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555554444 43 113334555555555555555555
Q ss_pred HHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 002772 473 MLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKC 552 (882)
Q Consensus 473 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~ 552 (882)
..|+++.+ ..+.+...+..+...+...|+.++|..++..+.+.. +.+...+..++..+.+.
T Consensus 622 ~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 622 SSFKKLLA------------------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHH------------------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 55555543 122233445555555566666666666666665533 22455566666666666
Q ss_pred CCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHH
Q 002772 553 GCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEG 629 (882)
Q Consensus 553 g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a 629 (882)
|++++|.++++.+. ..+...|..+...+...|++++|++.|+++...+ |+..++..+..++.+.|++++|
T Consensus 683 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-------PSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred CCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHCCCHHHH
Confidence 66666666666665 3345566666777777777777777777777743 5556677777778888888888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 002772 630 MDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLL 708 (882)
Q Consensus 630 ~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l 708 (882)
.+.++.+.+. .+.+...+..+...|.+.|+.++|.+.++++ ...|+...++..+...+...|+ +.|...+++++++
T Consensus 756 ~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 8888887763 3456777888888888888888888888876 3456666588888888888888 7788889999988
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 709 EPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 709 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
.|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 89888888889999999999999999998887765
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=2.1e-35 Score=253.52 Aligned_cols=106 Identities=70% Similarity=1.149 Sum_probs=98.7
Q ss_pred ceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhh--------hhhhhhhHHHHHH
Q 002772 749 GCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEK--------ETLLCGHSEKLAI 820 (882)
Q Consensus 749 ~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~se~la~ 820 (882)
||||+++ |.|++||.+||+. ++..++...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999987 9999999999998 455678889999999999998888766 5689999999999
Q ss_pred HHhhhcCCCCCeEEEEccc-ccCcchhHhhhhhhcccceeEEEecCCcccccc
Q 002772 821 AFGILNTPPGTTIRVAKNL-RVCNDCHQATKFISKIESREIILRDVRRFHHFK 872 (882)
Q Consensus 821 ~~~~~~~~~~~~~~~~~n~-~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~ 872 (882)
||||+++ ||+||+ |||+|||+|+|+||++++|+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4.1e-24 Score=263.94 Aligned_cols=632 Identities=11% Similarity=0.032 Sum_probs=440.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhc
Q 002772 48 SLRSEARSNQFREAILSYIEMTRSDIQP-DNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKC 126 (882)
Q Consensus 48 ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 126 (882)
..+.....++.+.|...++++... .| ++..+..+...+...|+.++|.+.++.+.+..+ .++........ +.
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P--~~~~~~~~~~~-~~-- 106 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP--DSNAYRSSRTT-ML-- 106 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CChHHHHHHHH-HH--
Confidence 345566777777777777777664 33 445566666777777777777777777777663 23222110000 00
Q ss_pred CCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHH-HHHH-hccCCcccchHHHHH
Q 002772 127 GSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVS-VALA-CSNLSRRDGLRLGRQ 204 (882)
Q Consensus 127 g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~-~~~~~~~~~~~~~~~ 204 (882)
...|+...+-.+...+.+.|++++|+..|+.+.... .|+. .+.. .... .... +..+.+..
T Consensus 107 -------------~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~-~la~~y~~~~~~~~---g~~~~A~~ 168 (1157)
T PRK11447 107 -------------LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPEL-DLAVEYWRLVAKLP---AQRPEAIN 168 (1157)
T ss_pred -------------hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCCh-HHHHHHHHHHhhCC---ccHHHHHH
Confidence 001111222333445566677777777777665432 2221 1111 1111 1122 55666777
Q ss_pred HHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCc------c-----------------cHHHHHHHHHcC
Q 002772 205 VHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDL------V-----------------SWNTIVSSLSQN 261 (882)
Q Consensus 205 ~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~------~-----------------~~~~li~~~~~~ 261 (882)
.+..+++..+.+..++..|...+...|+.++|++.|+++..... . .+...+..+-..
T Consensus 169 ~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 169 QLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc
Confidence 77766666655666777888888888888888888887643211 0 112222222222
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHH
Q 002772 262 DKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRV 341 (882)
Q Consensus 262 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 341 (882)
....+|...+..+......|+... ...-.++...|++++|...++.+++.. +.+..++..|...|.+.|++++|...
T Consensus 249 ~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred hHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334556666666554433333222 122345667899999999999999875 67888999999999999999999999
Q ss_pred HhccCCCCc-----eehHHH------------HHHHhcCCChHHHHHHHHHHHHHcCCCCC-cchHhhHHhHhhcCCCCc
Q 002772 342 FDFISDKKI-----ALWNAM------------ITGYGQNEYDEEALMLFIKMEEVAGLWPN-ATTMSSVVPACVRSEAFP 403 (882)
Q Consensus 342 f~~m~~~~~-----~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~~~~ 403 (882)
|++..+.+. ..|..+ ...+.+.|++++|+..|++... ..|+ ...+..+...+...|+++
T Consensus 326 l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~---~~P~~~~a~~~Lg~~~~~~g~~~ 402 (1157)
T PRK11447 326 FEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ---VDNTDSYAVLGLGDVAMARKDYA 402 (1157)
T ss_pred HHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHH
Confidence 988765322 123222 3456789999999999999933 3444 445666778889999999
Q ss_pred chhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCC------------eeeHHHHHHHHHhcCCHHHH
Q 002772 404 DKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRD------------TVSWNTMITGYTICGQHGDA 471 (882)
Q Consensus 404 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A 471 (882)
+|++.++.+++.. +.+...+..+...|. .++.++|..+++.+.... ...+..+...+...|++++|
T Consensus 403 eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA 480 (1157)
T PRK11447 403 AAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480 (1157)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999865 344566677777775 467899999998775321 22345567788899999999
Q ss_pred HHHHHHHhhhhhhhhccccccccccccCCCCC-cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 002772 472 LMLLREMQNMEEEKNRNNVYDLDETVLRPKPN-SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYA 550 (882)
Q Consensus 472 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 550 (882)
++.|++.++ ..|+ ...+..+...+...|+.++|...++.+++... .+...+..+...+.
T Consensus 481 ~~~~~~Al~-------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~ 540 (1157)
T PRK11447 481 AELQRQRLA-------------------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHH-------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 999999986 3454 44566777889999999999999999987542 34445555566778
Q ss_pred hcCCHHHHHHHHhhCCCC----Chh---------hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHH
Q 002772 551 KCGCLNFARRVFDLMPVR----NVI---------TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALF 617 (882)
Q Consensus 551 k~g~~~~A~~~~~~m~~~----~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll 617 (882)
+.|+.++|...++.+... +.. .+..+...+...|+.++|+++++. .+++...+..+.
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----------~p~~~~~~~~La 610 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----------QPPSTRIDLTLA 610 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----------CCCCchHHHHHH
Confidence 899999999999988622 111 123456678899999999999872 345556677888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHhcCchh
Q 002772 618 AACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMP-PEFDKAGAWSSLLGACRIHQNVE 696 (882)
Q Consensus 618 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~~ll~a~~~~~~~~ 696 (882)
..+...|+.++|++.|+...+. -+.+...+..++.+|...|++++|.+.++... ..|+...++..+..++...|+.+
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH
Confidence 8899999999999999999874 23357889999999999999999999999864 56777768888999999999999
Q ss_pred HHHHHHHHHhcCCCCCCc------hHHHHHHHHHHcCCchHHHHHHHHHH-hCCC
Q 002772 697 IGEIAAQNLFLLEPDVAS------HYVLLSNIYSSAQLWDKAMDVRKKMK-EMGV 744 (882)
Q Consensus 697 ~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m~-~~g~ 744 (882)
.|...++++++..|+++. .+..++.+|...|++++|...+++.. ..|+
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 999999999998876654 56677999999999999999988764 3344
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=3.8e-22 Score=246.60 Aligned_cols=610 Identities=12% Similarity=0.042 Sum_probs=418.6
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCC--CCceeHHHHHHHHHhcC
Q 002772 82 AVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITE--KDQVSWNSMIATLCRFG 159 (882)
Q Consensus 82 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 159 (882)
...+.+...++.+.|.+.+.++.... |.++.++..++..+.+.| +.++|.+.+++..+ |+...+..
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g-~~~~A~~~l~~l~~~~P~~~~~~~--------- 100 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQG-DSDGAQKLLDRLSQLAPDSNAYRS--------- 100 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCChHHHH---------
Confidence 33455555666666666666665543 355666666666666666 66666666665543 22111100
Q ss_pred CchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHH-HHHHHhcCChhHHHH
Q 002772 160 KWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNAL-MAMYAKLGRVDDAKT 238 (882)
Q Consensus 160 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~L-i~~y~~~g~~~~A~~ 238 (882)
+...+.. ..|+.......-..+... +..+.|.+.+..+.+..+++....... .......|+.++|++
T Consensus 101 -------~~~~~~~--~~~~~~~~l~~A~ll~~~---g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~ 168 (1157)
T PRK11447 101 -------SRTTMLL--STPEGRQALQQARLLATT---GRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAIN 168 (1157)
T ss_pred -------HHHHHHh--cCCchhhHHHHHHHHHhC---CCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHH
Confidence 0000000 011211122222334445 889999999999988764443321111 122234699999999
Q ss_pred HHhcCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC----------------Chh---hHhhHHHHhccC
Q 002772 239 LFKSFED--R-DLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKP----------------DGV---SIASVLPACSHL 296 (882)
Q Consensus 239 ~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----------------d~~---t~~~ll~a~~~~ 296 (882)
.|+.+.+ | +...+..+...+...|+.++|+..|+++....... +.. .+...+..+-..
T Consensus 169 ~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 169 QLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc
Confidence 9998875 3 45578888899999999999999999987642110 000 111112222222
Q ss_pred CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHHH
Q 002772 297 EMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALMLF 373 (882)
Q Consensus 297 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~ 373 (882)
...+.+...+....+.. ..++ .....+...+...|++++|...|++.... +...+..+...|.+.|++++|+..|
T Consensus 249 ~~~~~A~~~L~~~~~~~-~dp~-~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l 326 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQL-ADPA-FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQF 326 (1157)
T ss_pred hHHHHHHHHHHHHHHhc-cCcc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22344444444443322 1222 12234456778899999999999987653 5668899999999999999999999
Q ss_pred HHHHHHcCCCCCcc---hH------------hhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChH
Q 002772 374 IKMEEVAGLWPNAT---TM------------SSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIE 438 (882)
Q Consensus 374 ~~m~~~~g~~p~~~---t~------------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 438 (882)
++... ..|+.. .+ ......+.+.|++++|...+..+++.. +.+...+..|...|...|+++
T Consensus 327 ~~Al~---~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~ 402 (1157)
T PRK11447 327 EKALA---LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYA 402 (1157)
T ss_pred HHHHH---hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 99833 233321 11 112335678899999999999999875 455677888999999999999
Q ss_pred HHHHHHhhCCC--C-CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhc
Q 002772 439 ISKTIFDDMEV--R-DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCG 515 (882)
Q Consensus 439 ~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~ 515 (882)
+|.+.|+++.. | +...+..+...|. .++.++|+..++.+...... .. ......+. ...+..+...+.
T Consensus 403 eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~----~~---~~~~~~l~--~~~~~~~a~~~~ 472 (1157)
T PRK11447 403 AAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRR----SI---DDIERSLQ--NDRLAQQAEALE 472 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH----HH---HHHHHHhh--hhHHHHHHHHHH
Confidence 99999999873 3 3445666666664 46789999988876541000 00 00000011 113444556677
Q ss_pred CcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhHHHHH
Q 002772 516 ALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQEVLEL 592 (882)
Q Consensus 516 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l 592 (882)
..|+.++|.+.+..+++... .+..++..+...|.+.|++++|...|+++. .| +...+..+...+...|+.++|+..
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 89999999999999998653 356778889999999999999999999875 33 555566666667789999999999
Q ss_pred HHHHHHcCCCCCcccCChh---------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHH
Q 002772 593 LKNMVAEGSRGGEVKPNEV---------TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVE 663 (882)
Q Consensus 593 ~~~m~~~g~~~~~~~pd~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~ 663 (882)
++++.... ..++.. .+..+...+...|+.++|.++++. .+++...+..+.+.+.+.|+++
T Consensus 552 l~~l~~~~-----~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 552 LNTLPRAQ-----WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred HHhCCchh-----cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHH
Confidence 98865432 222221 233456778899999999999872 2445667788999999999999
Q ss_pred HHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 664 DAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 664 eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+|++.+++. ...|++..+|..++..+...|+.+.|+..++++++..|+++..+..++.+|...|++++|.++++++...
T Consensus 621 ~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 621 AARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999999876 4678888899999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 002772 743 G 743 (882)
Q Consensus 743 g 743 (882)
.
T Consensus 701 ~ 701 (1157)
T PRK11447 701 A 701 (1157)
T ss_pred C
Confidence 4
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2.6e-21 Score=227.55 Aligned_cols=639 Identities=10% Similarity=-0.007 Sum_probs=452.3
Q ss_pred hHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHH
Q 002772 44 SWIESLRSE--ARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVN 121 (882)
Q Consensus 44 ~~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 121 (882)
++.-++.+. ...|++++|+..|+...+..+. +...+..|...+...|+.++|....+..++.. |.|...+..|..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~ 120 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAA 120 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHH
Confidence 333344443 3459999999999999885433 35678888999999999999999999998876 466666666533
Q ss_pred HHHhcCCCHHHHHHHHhccCC--C-CceeHHHHHHH--------HHhcCCchHHHHHHHHHHHCCCCCChhhHHHH-HHH
Q 002772 122 MYGKCGSDMWDVYKVFDRITE--K-DQVSWNSMIAT--------LCRFGKWDLALEAFRMMLYSNVEPSSFTLVSV-ALA 189 (882)
Q Consensus 122 ~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~ 189 (882)
. + +.+.|..+++++.. | +...+..+... |.+.+ +|.+.++ .......|+..+.... .+.
T Consensus 121 i----~-~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~-lr~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 121 I----P-VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLP---VARAQLN-DATFAASPEGKTLRTDLLQR 191 (987)
T ss_pred h----c-cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-HhhhCCCCCcHHHHHHHHHH
Confidence 2 6 88899999998763 4 33444444444 66664 4555444 4433445555555555 788
Q ss_pred hccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHh-cCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHH
Q 002772 190 CSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAK-LGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAV 268 (882)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 268 (882)
+... ++++.+..++..+.+.++.+......|-.+|.. .++ +.+..+++...+.|...+..+...|.+.|+.++|.
T Consensus 192 Y~~l---~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 192 AIYL---KQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HHHH---hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888 999999999999999997777778888888888 477 99999988655568889999999999999999999
Q ss_pred HHHHHHHHCCCC-CChhhHhhHHHHhccCCChhH-HHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccC
Q 002772 269 MFLRQMALRGIK-PDGVSIASVLPACSHLEMLDT-GKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFIS 346 (882)
Q Consensus 269 ~l~~~m~~~g~~-pd~~t~~~ll~a~~~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 346 (882)
++++++...-.. |+..++.-++. +.+.... +..-+.. +. -+.-....-.++..+.+.+.++.|.++.+.-+
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLS---KYSANPVQALANYTV--QF--ADNRQYVVGATLPVLLKEGQYDAAQKLLATLP 340 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHH---hccCchhhhccchhh--hh--HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 999998765333 55555544433 3333221 1111111 11 01122344556888999999998887754222
Q ss_pred CCCceehHHHHH-H-HhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHh-C-CCCchH
Q 002772 347 DKKIALWNAMIT-G-YGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKL-G-LGRDRY 422 (882)
Q Consensus 347 ~~~~~~~~~li~-~-~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~ 422 (882)
.+.. ..+. + ....+...++...++.|.+... -+....--+--...+.|+.++|.+++...... + -..+..
T Consensus 341 -~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~~--~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 341 -ANEM---LEERYAVSVATRNKAEALRLARLLYQQEP--ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred -cchH---HHHHHhhccccCchhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 2221 1222 2 2234667777777777733211 12222222333345678888888888887762 1 223455
Q ss_pred HHHHHHHHHHhcCC---hHHHHHH-------------------------HhhCC---CC--CeeeHHHHHHHHHhcCCHH
Q 002772 423 VQNALMDMYSRMGR---IEISKTI-------------------------FDDME---VR--DTVSWNTMITGYTICGQHG 469 (882)
Q Consensus 423 ~~~~Li~~y~~~g~---~~~A~~~-------------------------~~~m~---~~--~~~~~~~li~~~~~~g~~~ 469 (882)
..+-|+..|.+.+. ..++..+ +.... .+ +...|..+..++.. ++.+
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 66678888888776 2333222 11111 11 34456777777766 8888
Q ss_pred HHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002772 470 DALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMY 549 (882)
Q Consensus 470 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 549 (882)
+|+..|.+... ..|+......+..++...|++++|...+..+... +|+...+..+...+
T Consensus 494 eAi~a~~~Al~-------------------~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 494 VALYAWLQAEQ-------------------RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHHH-------------------hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 99998888875 3466555444455556899999999999987554 33444566778888
Q ss_pred HhcCCHHHHHHHHhhCCCCChhhHH---HHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCH
Q 002772 550 AKCGCLNFARRVFDLMPVRNVITWN---VIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMV 626 (882)
Q Consensus 550 ~k~g~~~~A~~~~~~m~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~ 626 (882)
.+.|++++|...|++....+...++ .+.......|++++|+..|++.++ ..|+...+..+..++.+.|+.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-------l~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN-------IAPSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHCCCH
Confidence 9999999999999887733222222 233334455999999999999998 458888889999999999999
Q ss_pred HHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHH
Q 002772 627 SEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQN 704 (882)
Q Consensus 627 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~ 704 (882)
++|...|++.... .| +...+..+...+...|++++|++.+++. ...|+...+|..+..++...|+.+.|+..+++
T Consensus 626 deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 626 PAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999863 45 4778888889999999999999999875 56788888999999999999999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 705 LFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 705 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
+++++|++..+....+++.....+++.|.+-+++.-.-+
T Consensus 703 Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 703 VIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999988777554433
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.4e-19 Score=213.16 Aligned_cols=587 Identities=9% Similarity=-0.036 Sum_probs=399.4
Q ss_pred hcCCCHHHHHHHHhccCC--C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHH
Q 002772 125 KCGSDMWDVYKVFDRITE--K-DQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRL 201 (882)
Q Consensus 125 ~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~ 201 (882)
..| +.++|...|+...+ | +..++..|...|.+.|+.++|+..+++..+. .|+...|..++... +....
T Consensus 56 ~~G-d~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i------~~~~k 126 (987)
T PRK09782 56 KNN-DEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI------PVEVK 126 (987)
T ss_pred hCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh------ccChh
Confidence 347 99999999988664 4 5667899999999999999999999999875 56666666655333 55667
Q ss_pred HHHHHHhhhhcCCCchhHHHHHHHH--------HHhcCChhHHHHHHhcCCCCC--cccHHH-HHHHHHcCCChHHHHHH
Q 002772 202 GRQVHGNSLRVGEWNTFIMNALMAM--------YAKLGRVDDAKTLFKSFEDRD--LVSWNT-IVSSLSQNDKFLEAVMF 270 (882)
Q Consensus 202 ~~~~~~~~~~~g~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~m~~~~--~~~~~~-li~~~~~~g~~~~A~~l 270 (882)
+..++..+++..+.+..++..+... |.+.+....+++ .....++ ...... +...|.+.|++++|+++
T Consensus 127 A~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 127 SVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 7789999998887777777777776 888877777777 3333343 333344 48899999999999999
Q ss_pred HHHHHHCCCCCChhhHhhHHHHhcc-CCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC-
Q 002772 271 LRQMALRGIKPDGVSIASVLPACSH-LEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK- 348 (882)
Q Consensus 271 ~~~m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~- 348 (882)
+.++.+.+... ..-...+-.++.. .++ +.+..++.. . +..+..+...+.+.|.+.|+.++|.+++++++..
T Consensus 205 L~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~-lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 205 YNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----G-IFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----h-cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 99999986433 3334445556666 355 666666432 2 5578899999999999999999999999998753
Q ss_pred ----CceehHHHHHHHhcC-----CChHH---------HHHHHHHHH---------HHcCCCCCcchHhhHHhHhhcCCC
Q 002772 349 ----KIALWNAMITGYGQN-----EYDEE---------ALMLFIKME---------EVAGLWPNATTMSSVVPACVRSEA 401 (882)
Q Consensus 349 ----~~~~~~~li~~~~~~-----g~~~~---------A~~l~~~m~---------~~~g~~p~~~t~~~ll~~~~~~~~ 401 (882)
+..+|--++.-+... ..+.+ .+++.+... +-....|.......-..+....+.
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 333444444332222 00000 000111110 001223333321111111112244
Q ss_pred CcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC-C-Ce----eeHHHHHHHHHhcCC---HHHHH
Q 002772 402 FPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEV-R-DT----VSWNTMITGYTICGQ---HGDAL 472 (882)
Q Consensus 402 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-~-~~----~~~~~li~~~~~~g~---~~~A~ 472 (882)
..++.+.+..+.+.. +-+....--+.-...+.|+.++|.++|+.... + +. ..-+-++..|...+. ..+++
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 555555555555432 22333333444456788999999999998764 2 22 234467778887776 44454
Q ss_pred HHHHHHhhhhhh------hhccccccccccccCCCCC---cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHH
Q 002772 473 MLLREMQNMEEE------KNRNNVYDLDETVLRPKPN---SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGS 543 (882)
Q Consensus 473 ~~~~~m~~~~~~------~~~~~~~~~~~~~~~~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 543 (882)
.+-..+-..+.. ..............+..|+ ...+..+...+.. +..++|...+....... |+.....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L 513 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHR 513 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHH
Confidence 442211110000 0000000111111133343 3344444444444 78888999777777654 4444444
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh-HHHHHHHHH
Q 002772 544 ALVDMYAKCGCLNFARRVFDLMP--VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-TFIALFAAC 620 (882)
Q Consensus 544 ~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-t~~~ll~a~ 620 (882)
.+...+.+.|++++|...|+++. .|+...+..+...+.+.|+.++|.+.|++.++.+ |+.. .+..+...+
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-------P~~~~l~~~La~~l 586 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-------LGDNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHH
Confidence 45555678999999999999876 4556667788888999999999999999999854 5543 333444455
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHH
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGE 699 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~ 699 (882)
...|++++|...+++..+ +.|+...|..+..++.+.|+.++|.+.+++. ...|+...++..+..++...|+.+.|.
T Consensus 587 ~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 567999999999999985 4678889999999999999999999999876 568888889999999999999999999
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 700 IAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 700 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
..++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999876543
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=7.4e-20 Score=189.64 Aligned_cols=444 Identities=13% Similarity=0.070 Sum_probs=352.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhh
Q 002772 251 WNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYC 330 (882)
Q Consensus 251 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~ 330 (882)
-..|..-..+.|++.+|.+.-...-... .-+..+...+=..+.+..+++...+--...++. .+.-..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK--NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc--cchHHHHHHHHHHHHH
Confidence 3445555667788888877654332221 112222222223344444555544443344443 2556678888889999
Q ss_pred cCCChHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhH-hhcCCCCcchh
Q 002772 331 NCREVECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPA-CVRSEAFPDKE 406 (882)
Q Consensus 331 ~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~ 406 (882)
..|++++|..+++.+.+. .+..|..+..++...|+.+.|.+.|.+. ..+.|+.+...+-+.- .-..|.+++|.
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~a---lqlnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEA---LQLNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHH---HhcCcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999888764 3568999999999999999999999888 4577877665443333 33468899999
Q ss_pred hHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Q 002772 407 GIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRD---TVSWNTMITGYTICGQHGDALMLLREMQNMEE 483 (882)
Q Consensus 407 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 483 (882)
.-+-++++.. +--..+|+-|...+-..|++..|...|++...-| ...|-.|-..|...+.+++|+..+.+...
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--- 280 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--- 280 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---
Confidence 8888887754 2334678888899999999999999999987443 34677888899999999999999999875
Q ss_pred hhhccccccccccccCCCCC-cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 002772 484 EKNRNNVYDLDETVLRPKPN-SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVF 562 (882)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~ 562 (882)
..|+ .+.+..+-..|...|.++.|...+++.+..... =+..|+.|..++-..|++.+|...+
T Consensus 281 ----------------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 281 ----------------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred ----------------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHH
Confidence 4565 456777777888999999999999998875422 3568999999999999999999999
Q ss_pred hhCC--CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002772 563 DLMP--VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKD 638 (882)
Q Consensus 563 ~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 638 (882)
.+.. .| ...+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..+++..
T Consensus 344 nkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~-------v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal- 415 (966)
T KOG4626|consen 344 NKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE-------VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL- 415 (966)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh-------hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH-
Confidence 9876 33 467889999999999999999999999998 6688 5689999999999999999999999987
Q ss_pred hcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchH
Q 002772 639 DYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHY 716 (882)
Q Consensus 639 ~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 716 (882)
.|+|+ .+.|+.|...|-..|+.++|.+.+.+. .+.|.-.++.+.|...++-.||+.+|...++.+++++||.+.+|
T Consensus 416 --rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 416 --RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred --hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 57888 778999999999999999999988765 68888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCchH
Q 002772 717 VLLSNIYSSAQLWDK 731 (882)
Q Consensus 717 ~~l~~~y~~~g~~~~ 731 (882)
-.|.-.+.--..|.+
T Consensus 494 cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 494 CNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHHHHHHhcccc
Confidence 988887777777776
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=8.7e-19 Score=181.79 Aligned_cols=413 Identities=14% Similarity=0.122 Sum_probs=328.2
Q ss_pred hccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHH
Q 002772 293 CSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEA 369 (882)
Q Consensus 293 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A 369 (882)
.-+.|++++|++.-..+-... +.+....-.+-..|....+.+....--..-.+. ...+|..+.+.+-..|+.++|
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHH
Confidence 345678888877655544333 333333334445566666666544332222222 234799999999999999999
Q ss_pred HHHHHHHHHHcCCCCC-cchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHH-HHHHHHHHHhcCChHHHHHHHhhC
Q 002772 370 LMLFIKMEEVAGLWPN-ATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYV-QNALMDMYSRMGRIEISKTIFDDM 447 (882)
Q Consensus 370 ~~l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~~~~~~m 447 (882)
+.+|+.| -.++|+ ...|..+..++...|+.+.|.+.+.+.++. .|+... -+-+.......|++++|...+.+.
T Consensus 136 l~~y~~a---iel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 136 LALYRAA---IELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHH---HhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 9999999 345664 457888888999999999999999998875 354433 334555666789999999988776
Q ss_pred C--CC-CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCc-chHhhHHHhhcCcchHHHH
Q 002772 448 E--VR-DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNS-ITLMTVLPGCGALSALAKG 523 (882)
Q Consensus 448 ~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~-~t~~~ll~a~~~~~~~~~a 523 (882)
. +| =.+.|+.|...+-.+|+...|++.|++.++ +.|+- -.|..+-..+...+.++.|
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk-------------------ldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK-------------------LDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc-------------------CCCcchHHHhhHHHHHHHHhcchHH
Confidence 5 34 367899999999999999999999999975 66763 3556666666666666777
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 002772 524 KEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VRN-VITWNVIIMAYGMHGEGQEVLELLKNMVAEG 600 (882)
Q Consensus 524 ~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 600 (882)
...+..+.... +....++..|.-.|...|.++-|...+++.. +|+ ...|+.|..++-..|+..+|.+.|++.+.
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-- 348 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR-- 348 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--
Confidence 66666655433 2245677778888999999999999999876 454 68999999999999999999999999998
Q ss_pred CCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCC
Q 002772 601 SRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFD 677 (882)
Q Consensus 601 ~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~ 677 (882)
..|+ ..+.+.|...+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|..-+++. .++|.
T Consensus 349 -----l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 349 -----LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred -----hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 4577 46889999999999999999999999874 4565 567899999999999999999999875 78999
Q ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 678 KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 678 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
-.++++.+...|...|+++.|...+.+++.++|..+.++..|+.+|-.+|+..+|..-++...+.
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 98899999999999999999999999999999999999999999999999999999988876543
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.4e-15 Score=165.24 Aligned_cols=598 Identities=13% Similarity=0.103 Sum_probs=384.3
Q ss_pred chhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccC--C----CCceeHHHHHHHHHhcCCchHHHH
Q 002772 93 LSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRIT--E----KDQVSWNSMIATLCRFGKWDLALE 166 (882)
Q Consensus 93 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~----~~~~~~~~li~~~~~~g~~~~A~~ 166 (882)
++.|.+-|..+.+..+. .-+.....---+|.+ + ++-.|..+|.... . +|+.. .+--.+.+.|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynk-k-dY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNK-K-DYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhcc-c-cHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHH
Confidence 57788888888877643 222222222222333 5 8999999998732 2 33321 11134457899999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhc-cCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCC
Q 002772 167 AFRMMLYSNVEPSSFTLVSVALACS-NLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFED 245 (882)
Q Consensus 167 ~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 245 (882)
.|.+.++- .|+.+.-...|.... ..........|.++....-+....++.+.|.|.+.|.-.|+++.+..+...+..
T Consensus 221 a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 221 AFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 99998864 443322222221111 111114556677777766666688999999999999999999999999877654
Q ss_pred CC------cccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhh--HhhHHHHhccCCChhHHHHHHHHHHHhCCCCC
Q 002772 246 RD------LVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVS--IASVLPACSHLEMLDTGKEIHAYALRNDILID 317 (882)
Q Consensus 246 ~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 317 (882)
.. ..+|-.+-++|-..|++++|...|.+-.+ ..||.++ +.-+-..+...|+++.+...|+.+.+.. +.
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~ 374 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PN 374 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cc
Confidence 32 23577788999999999999999976655 4555544 4456677888999999999999999984 77
Q ss_pred chhHHHHHHHHhhcCC----ChHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHHHHHHH---HHcCCCCCcc
Q 002772 318 NSFVGSALVDMYCNCR----EVECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALMLFIKME---EVAGLWPNAT 387 (882)
Q Consensus 318 ~~~~~~~Li~~y~~~g----~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~~g~~p~~~ 387 (882)
+..+...|...|+..+ ..+.|..+......+ |..+|-.+...+-+..-+. ++..|.... ...+..+...
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHH
Confidence 8888888888888775 456666666666554 4446666666655544433 366655441 2344446666
Q ss_pred hHhhHHhHhhcCCCCcchhhHHHHHHHh---CCCCchH------HHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHH
Q 002772 388 TMSSVVPACVRSEAFPDKEGIHGHAIKL---GLGRDRY------VQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTM 458 (882)
Q Consensus 388 t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~------~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 458 (882)
..+.+.......|+++.|...+...... -..+|.. +--.|...+-..++.+.|.+.|..+....+. .
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~----Y 529 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG----Y 529 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch----h
Confidence 7777777778888888888888877654 1222321 1222455566677888888888877643222 3
Q ss_pred HHHHHhc-------CCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHH
Q 002772 459 ITGYTIC-------GQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAI 531 (882)
Q Consensus 459 i~~~~~~-------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 531 (882)
|.+|.+. +...+|...+.+... ....|....+.+..-+-....+..|..-+..+.
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~------------------~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~ 591 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALN------------------IDSSNPNARSLLGNLHLKKSEWKPAKKKFETIL 591 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHh------------------cccCCcHHHHHHHHHHHhhhhhcccccHHHHHH
Confidence 3333333 566778888887776 334444444444445555555556666555444
Q ss_pred HhcC-CCchhHHHHHHHHHHh------------cCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHH
Q 002772 532 RNML-ATDVVVGSALVDMYAK------------CGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKN 595 (882)
Q Consensus 532 ~~g~-~~~~~~~~~li~~y~k------------~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 595 (882)
+.-. .+|.++.-+|.+.|.. .+..+.|.++|.++. +.|...-|.+...++..|++.+|..+|.+
T Consensus 592 ~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 592 KKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHH
Confidence 4222 2566666667665543 245677888887665 45677777777788888888888888888
Q ss_pred HHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CC
Q 002772 596 MVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PP 674 (882)
Q Consensus 596 m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~ 674 (882)
..+.. .-+..+|..+...|...|++..|+++|+...+++.-.-+..+..+|..++-++|.+.+|.+..... ..
T Consensus 672 VrEa~------~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 672 VREAT------SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHH------hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 88765 334567788888888888888888888888887776667888888888888888888887765543 34
Q ss_pred CCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 002772 675 EFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVR 745 (882)
Q Consensus 675 ~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 745 (882)
.|.+..+--.++-. ..+..+.++..++ ..+-.+....+..++|.++|..|...+-+
T Consensus 746 ~p~~~~v~FN~a~v---------~kkla~s~lr~~k------~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 746 APSNTSVKFNLALV---------LKKLAESILRLEK------RTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred CCccchHHhHHHHH---------HHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45554222122111 1222333334443 12223344445567788888887776544
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=2.1e-16 Score=183.61 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=163.1
Q ss_pred hhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHH
Q 002772 513 GCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEV 589 (882)
Q Consensus 513 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 589 (882)
.+...|++++|...+..+++.. +.....|..+...|...|++++|...|++.. +.+...|..+...|...|++++|
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3334444444444444444332 1134466677778888888888888888765 34577888888888899999999
Q ss_pred HHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHH
Q 002772 590 LELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQL 668 (882)
Q Consensus 590 ~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~ 668 (882)
+..|++.++.. |+ ...+..+...+.+.|++++|+..|+...+. .+.+...|..+..++...|++++|.+.
T Consensus 419 ~~~~~kal~l~-------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 419 GKDYQKSIDLD-------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HHHHHHHHHcC-------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 99999998844 55 456667777888889999999999988763 333577888889999999999999998
Q ss_pred HHhC-CCCCCchhhH-------HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 669 INMM-PPEFDKAGAW-------SSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 669 ~~~m-~~~p~~~~~~-------~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
+++. ...|+....| +..+..+...|+++.|+..++++++++|++...+..|+.+|...|++++|.+.+++..
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8874 3444322122 1122223446899999999999999999999999999999999999999999998875
Q ss_pred hC
Q 002772 741 EM 742 (882)
Q Consensus 741 ~~ 742 (882)
+.
T Consensus 570 ~l 571 (615)
T TIGR00990 570 EL 571 (615)
T ss_pred HH
Confidence 54
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=4.4e-17 Score=179.81 Aligned_cols=199 Identities=10% Similarity=0.081 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CC------hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hh
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMPV--RN------VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EV 611 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~~--~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~ 611 (882)
+++.++.+|.+.|++++|.+.|+.+.. |+ ...|..+...+.+.|++++|++.|+++.+.. |+ ..
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~ 215 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-------PQCVR 215 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-------cCCHH
Confidence 344444455555555555555544431 11 1123445555566666666666666666532 33 33
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACR 690 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~ 690 (882)
.+..+...+.+.|++++|.++|+++.+. +-......+..++.+|.+.|++++|.+.++++ ...|+.. .+..++..+.
T Consensus 216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~ 293 (389)
T PRK11788 216 ASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLE 293 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHH
Confidence 4555556666666666666666666543 11111344566666666667777776666654 2345555 5566777777
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHH---cCCchHHHHHHHHHHhCCCccCCc
Q 002772 691 IHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSS---AQLWDKAMDVRKKMKEMGVRKEPG 749 (882)
Q Consensus 691 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~m~~~g~~~~~~ 749 (882)
..|+.+.|...++++++..|++... ..+...+.. .|+.+++..++++|.++++++.|.
T Consensus 294 ~~g~~~~A~~~l~~~l~~~P~~~~~-~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 294 EQEGPEAAQALLREQLRRHPSLRGF-HRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhCCHHHHHHHHHHHHHhCcCHHHH-HHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7788888888888888888876643 333444332 458899999999999999999986
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=3.8e-17 Score=180.32 Aligned_cols=305 Identities=14% Similarity=0.096 Sum_probs=204.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCC-hhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCc---hhHHHHHHHHhh
Q 002772 255 VSSLSQNDKFLEAVMFLRQMALRGIKPD-GVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDN---SFVGSALVDMYC 330 (882)
Q Consensus 255 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~~Li~~y~ 330 (882)
...+...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..+++.+++.+ ..++ ..++..|...|.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHH
Confidence 44556788999999999999886 343 4467777778888888888888888887754 2221 245677777888
Q ss_pred cCCChHHHHHHHhccCC---CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhh
Q 002772 331 NCREVECGRRVFDFISD---KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEG 407 (882)
Q Consensus 331 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 407 (882)
+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+ ...+..+....
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~------------------- 178 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL-EKLGGDSLRVE------------------- 178 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH-HHhcCCcchHH-------------------
Confidence 88888888888877765 24456777777788888888888887777 32221111000
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Q 002772 408 IHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEV--R-DTVSWNTMITGYTICGQHGDALMLLREMQNMEEE 484 (882)
Q Consensus 408 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 484 (882)
....+..+...|.+.|++++|...|+++.+ | +...+..+...|.+.|++++|.+.|+++.. .
T Consensus 179 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~ 243 (389)
T PRK11788 179 ------------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE---Q 243 (389)
T ss_pred ------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---H
Confidence 011234455566667777777777776542 2 234556666777777777777777777765 1
Q ss_pred hhccccccccccccCCCCC--cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 002772 485 KNRNNVYDLDETVLRPKPN--SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVF 562 (882)
Q Consensus 485 ~~~~~~~~~~~~~~~~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~ 562 (882)
.|+ ..++..+..++...|++++|.+.+..+.+.. |+...+..++..|.+.|++++|..+|
T Consensus 244 ----------------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 244 ----------------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred ----------------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 222 2345556666666666666666666666543 44455577888888888888888888
Q ss_pred hhCC--CCChhhHHHHHHHHHc---cCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCH
Q 002772 563 DLMP--VRNVITWNVIIMAYGM---HGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMV 626 (882)
Q Consensus 563 ~~m~--~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~ 626 (882)
+++. .|+..+++.++..+.. +|+.++++.+|++|.+.+ ++|+.. ..|++.|..
T Consensus 306 ~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 306 REQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ-----LKRKPR------YRCRNCGFT 363 (389)
T ss_pred HHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH-----HhCCCC------EECCCCCCC
Confidence 8765 5777788877776654 557888888888888877 667665 346666654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=5.5e-16 Score=183.36 Aligned_cols=398 Identities=9% Similarity=-0.017 Sum_probs=208.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCCh
Q 002772 256 SSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREV 335 (882)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~ 335 (882)
......|+.++|++++.+..... ..+...+..+..++...|++++|.++++.+++.. |.+......+...+...|+.
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCH
Confidence 34445566666666666655411 1222235555555555555555555555555542 33444444454555555555
Q ss_pred HHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHH
Q 002772 336 ECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHA 412 (882)
Q Consensus 336 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 412 (882)
++|...+++.... +.. |..+...+...|+.++|+..+++ +
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~------------------------------------a 142 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ------------------------------------A 142 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH------------------------------------H
Confidence 5555554444321 222 44444444444555555554444 4
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCee--------eHHHHHHHH-----HhcCCH---HHHHHHHH
Q 002772 413 IKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTV--------SWNTMITGY-----TICGQH---GDALMLLR 476 (882)
Q Consensus 413 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~--------~~~~li~~~-----~~~g~~---~~A~~~~~ 476 (882)
++.. +.+..++..+...+.+.|..++|.+.++.... +.. ....++..+ ...+++ ++|++.++
T Consensus 143 l~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 143 LPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 4432 22333444455666666777777777766553 110 111112111 122233 77888888
Q ss_pred HHhhhhhhhhccccccccccccCCCCCcc-hHhh----HHHhhcCcchHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHH
Q 002772 477 EMQNMEEEKNRNNVYDLDETVLRPKPNSI-TLMT----VLPGCGALSALAKGKEIHAYAIRNMLA-TDVVVGSALVDMYA 550 (882)
Q Consensus 477 ~m~~~~~~~~~~~~~~~~~~~~~~~p~~~-t~~~----ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~ 550 (882)
.+.+.. ...|+.. .+.. .+.++...++.++|...+..+.+.+.. |+- ....+...|.
T Consensus 221 ~ll~~~----------------~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl 283 (765)
T PRK10049 221 ALEALW----------------HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYL 283 (765)
T ss_pred HHHhhc----------------ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHH
Confidence 887510 1122211 1100 022223345555555555555544321 111 1111344455
Q ss_pred hcCCHHHHHHHHhhCC--CCC-----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcc
Q 002772 551 KCGCLNFARRVFDLMP--VRN-----VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHS 623 (882)
Q Consensus 551 k~g~~~~A~~~~~~m~--~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~ 623 (882)
..|++++|+..|+++. .|. ...+..+..++...|++++|+++++++.... |.......
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-------P~~~~~~~-------- 348 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS-------PPFLRLYG-------- 348 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-------CceEeecC--------
Confidence 5555555555555443 111 1123333444455555555555555554421 21110000
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHH
Q 002772 624 GMVSEGMDLFYKMKDDYGIEPS---PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGE 699 (882)
Q Consensus 624 g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~ 699 (882)
. ..-.|+ ...+..+..++...|++++|++.++++ ...|+...+|..++..+...|+.+.|+
T Consensus 349 -----------~----~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 349 -----------S----PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred -----------C----CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 0 001223 234456677777888888888888775 346777768888888888888888888
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 700 IAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 700 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
..++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus 414 ~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 414 NELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888877664
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=9e-14 Score=153.14 Aligned_cols=643 Identities=12% Similarity=0.034 Sum_probs=412.3
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCCc--cHHHHHHHHh-cCC------C-----chhHHHHHH
Q 002772 40 RCKESWIESLRSEARSNQFREAILSYIEMTRSD----IQPDNF--AFPAVLKAVA-GIQ------D-----LSLGKQIHA 101 (882)
Q Consensus 40 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~--~~~~ll~~~~-~~~------~-----~~~a~~~~~ 101 (882)
.-...|......|...|..++.+.+++.-.... -.++.. .-...+.+|- ..+ + ...+..+|.
T Consensus 39 a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~ 118 (1018)
T KOG2002|consen 39 APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFD 118 (1018)
T ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhh
Confidence 344579999999999999999999988765211 011111 1111122221 111 0 111122222
Q ss_pred HHHHhcCCCCChhH-HhHHHHHHHhcC-CCHHHHHHHHhccCC--CCceeHHHHHHHH--HhcCCchHHHHHHHHHHHC-
Q 002772 102 HVVKYGYGLSSVTV-ANTLVNMYGKCG-SDMWDVYKVFDRITE--KDQVSWNSMIATL--CRFGKWDLALEAFRMMLYS- 174 (882)
Q Consensus 102 ~~~~~~~~~~~~~~-~~~li~~y~~~g-~~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~- 174 (882)
..-+.... .++.. +.... |...| .++++|...|..... |+-+. -.+..++ ...+++..|+.+|......
T Consensus 119 ~A~ki~m~-~~~~l~~~~~~--~l~~~~~~~~~A~a~F~~Vl~~sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~in 194 (1018)
T KOG2002|consen 119 LADKIDMY-EDSHLLVQRGF--LLLEGDKSMDDADAQFHFVLKQSPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRIN 194 (1018)
T ss_pred HHHHhhcc-Ccchhhhhhhh--hhhcCCccHHHHHHHHHHHHhhCCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcC
Confidence 22111111 11111 11111 11222 136888888887654 33221 1233333 3568999999999996653
Q ss_pred -CCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcC---ChhHHHHHHhcCC---CCC
Q 002772 175 -NVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLG---RVDDAKTLFKSFE---DRD 247 (882)
Q Consensus 175 -g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~m~---~~~ 247 (882)
...||...- +=..+... +..+.|...+..+++..+.++..+-.|--+-.... .+..+..++...- ..|
T Consensus 195 p~~~aD~rIg--ig~Cf~kl---~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n 269 (1018)
T KOG2002|consen 195 PACKADVRIG--IGHCFWKL---GMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN 269 (1018)
T ss_pred cccCCCccch--hhhHHHhc---cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC
Confidence 344554321 11122344 66777777787777776544444444433333333 3445555554432 357
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHCCCC--CChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHH
Q 002772 248 LVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIK--PDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSAL 325 (882)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~L 325 (882)
.+..|.|-+.|.-.|++..++.+...+...-.. .-...|-.+-+++-..|+++.|...|....+.. -...+..+--|
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-NDNFVLPLVGL 348 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-CCCccccccch
Confidence 888999999999999999999999998775311 112347778888889999999999999988865 22224556678
Q ss_pred HHHhhcCCChHHHHHHHhccCCC---CceehHHHHHHHhcCC----ChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhc
Q 002772 326 VDMYCNCREVECGRRVFDFISDK---KIALWNAMITGYGQNE----YDEEALMLFIKMEEVAGLWPNATTMSSVVPACVR 398 (882)
Q Consensus 326 i~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~ 398 (882)
..+|.+.|+++.|...|+.+... +..+...+-..|...+ ..++|..++.+..+. .+-|...|..+-..+ .
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~-e 425 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLL-E 425 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHH-H
Confidence 89999999999999999988654 2334555555666554 346677776666221 123334444444333 3
Q ss_pred CCCCcchhhHHHHH----HHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCC-------Cee------eHHHHHHH
Q 002772 399 SEAFPDKEGIHGHA----IKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVR-------DTV------SWNTMITG 461 (882)
Q Consensus 399 ~~~~~~a~~~~~~~----~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-------~~~------~~~~li~~ 461 (882)
.++......++..+ ...+-.+.+.+.|.+...+...|++++|...|++.... |.. +--.+...
T Consensus 426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 34444445555443 35566688889999999999999999999999876522 221 12224455
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHH-hhcCcchHHHHHHHHHHHHHhcCCCchh
Q 002772 462 YTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLP-GCGALSALAKGKEIHAYAIRNMLATDVV 540 (882)
Q Consensus 462 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 540 (882)
+-..++++.|.+.|..+.+ ..|+.++-..-+- ..-..+.+.+|...+..+.... ..++.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilk-------------------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ 565 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILK-------------------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPN 565 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHH-------------------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcH
Confidence 6667789999999999986 3466554333222 2223466777888777776643 44667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHc------------cCChhHHHHHHHHHHHcCCCC
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMP-----VRNVITWNVIIMAYGM------------HGEGQEVLELLKNMVAEGSRG 603 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~~ 603 (882)
+++.+.+.|.+...+.-|.+-|..+. .+|..+.-+|.+.|.+ .+..++|+++|.+.+...
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--- 642 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--- 642 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC---
Confidence 77778888998888888888555443 3455555555554432 245788999999998864
Q ss_pred CcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC---CCCCCchh
Q 002772 604 GEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM---PPEFDKAG 680 (882)
Q Consensus 604 ~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m---~~~p~~~~ 680 (882)
+-|...-+.+.-.++..|.+.+|..+|.+..+. ..-...+|-.+..+|..+|++-.|+++|+.. -.+.++..
T Consensus 643 ---pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 643 ---PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred ---cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 446677788888889999999999999999874 3345667888889999999999999998854 23444555
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIY 723 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 723 (882)
+..-|..++...|.+.++...+..+..+.|.++.....++-+.
T Consensus 718 vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 718 VLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 8888999999999999999999999999999887655554443
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=1.2e-15 Score=176.44 Aligned_cols=350 Identities=10% Similarity=-0.003 Sum_probs=268.2
Q ss_pred cCCChHHHHHHHhccCCC------CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCc-chHhhHHhHhhcCCCCc
Q 002772 331 NCREVECGRRVFDFISDK------KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNA-TTMSSVVPACVRSEAFP 403 (882)
Q Consensus 331 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~~~~~~~~~~ 403 (882)
+..+++.-.-.|..-+++ +..-.-.++..+.+.|+.++|+.++..... ..|+. ..+..++.++...|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~---~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVL---TAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHH---hCCCchhHHHHHhhhHhhcCCHH
Confidence 445555555555555432 222345567778889999999999988822 23333 23444445666789999
Q ss_pred chhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CeeeHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 002772 404 DKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEV--R-DTVSWNTMITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 404 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
.|.+.++.+++.. +.+...+..+...|.+.|++++|...|++... | +...|..+...+...|++++|...++++..
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999988765 45566788888999999999999999998763 3 456788888999999999999999998865
Q ss_pred hhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 002772 481 MEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARR 560 (882)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 560 (882)
..|+.......+..+...|++++|...+..+.+....++......+...|.+.|++++|..
T Consensus 173 -------------------~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~ 233 (656)
T PRK15174 173 -------------------EVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ 233 (656)
T ss_pred -------------------hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH
Confidence 2344433333334467789999999999888776544444555666788899999999999
Q ss_pred HHhhCC---CCChhhHHHHHHHHHccCChhH----HHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHH
Q 002772 561 VFDLMP---VRNVITWNVIIMAYGMHGEGQE----VLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDL 632 (882)
Q Consensus 561 ~~~~m~---~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~ 632 (882)
.|++.. +.+...+..+...|...|++++ |+..|++.++. .|+ ...+..+...+...|++++|...
T Consensus 234 ~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-------~P~~~~a~~~lg~~l~~~g~~~eA~~~ 306 (656)
T PRK15174 234 TGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-------NSDNVRIVTLYADALIRTGQNEKAIPL 306 (656)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999876 4457788889999999999986 89999999984 465 55788888999999999999999
Q ss_pred HHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 002772 633 FYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMMP-PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEP 710 (882)
Q Consensus 633 ~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 710 (882)
+++..+. .|+ ...+..+..+|.+.|++++|.+.++++. ..|+....+..+..++...|+.+.|...++++++..|
T Consensus 307 l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 307 LQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 9998864 444 5677788999999999999999998763 5677762344456778999999999999999999999
Q ss_pred CCC
Q 002772 711 DVA 713 (882)
Q Consensus 711 ~~~ 713 (882)
++.
T Consensus 384 ~~~ 386 (656)
T PRK15174 384 SHL 386 (656)
T ss_pred hhc
Confidence 864
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=1.3e-14 Score=168.73 Aligned_cols=445 Identities=11% Similarity=0.006 Sum_probs=257.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCC--CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-hhhHhhHHHHhccC
Q 002772 220 MNALMAMYAKLGRVDDAKTLFKSFE--DRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPD-GVSIASVLPACSHL 296 (882)
Q Consensus 220 ~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~ 296 (882)
+..+...|.+.|+++.|++.|+... .|+...|..+..+|.+.|++++|++.+....+. .|+ ...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 3455566778888888888887754 356667777778888888888888888887764 343 33566666777777
Q ss_pred CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHH
Q 002772 297 EMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKM 376 (882)
Q Consensus 297 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 376 (882)
|++++|..-+..+...+ -..+......+...+ +......+...++.-+ .+..++..+.. |........+..-+..-
T Consensus 208 g~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l-~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 208 GKYADALLDLTASCIID-GFRNEQSAQAVERLL-KKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHH-HHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 88877777666555443 111111111111111 1111223333332221 12223332222 21111111111111110
Q ss_pred HHHcCCCCCcc-hHhhHHh---HhhcCCCCcchhhHHHHHHHhC-CCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 002772 377 EEVAGLWPNAT-TMSSVVP---ACVRSEAFPDKEGIHGHAIKLG-LGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRD 451 (882)
Q Consensus 377 ~~~~g~~p~~~-t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~ 451 (882)
....|+.. .+..+.. -....+++++|.+.+..+++.+ ..|+ +
T Consensus 284 ---~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~------------------------------~ 330 (615)
T TIGR00990 284 ---NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK------------------------------E 330 (615)
T ss_pred ---cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh------------------------------h
Confidence 01111100 0000000 0011233444444444444332 1111 1
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC-cchHhhHHHhhcCcchHHHHHHHHHHH
Q 002772 452 TVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN-SITLMTVLPGCGALSALAKGKEIHAYA 530 (882)
Q Consensus 452 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~ 530 (882)
...|+.+...+...|++++|+..|++.++ ..|+ ...+..+...+...|++++|...+..+
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~-------------------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIE-------------------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 22344444445555555555555555543 2233 223444444445555555555555555
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccc
Q 002772 531 IRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVK 607 (882)
Q Consensus 531 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~ 607 (882)
++.. +.+..++..+...|...|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.++. .
T Consensus 392 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------~ 463 (615)
T TIGR00990 392 LKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-------F 463 (615)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------C
Confidence 4442 2346677788888999999999999998876 345677888888899999999999999999874 3
Q ss_pred CC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-h-------HHHHHHHHhhccCCHHHHHHHHHhC-CCCCC
Q 002772 608 PN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSP-D-------HYACVVDLLGRAGKVEDAYQLINMM-PPEFD 677 (882)
Q Consensus 608 pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~ 677 (882)
|+ ...+..+...+...|++++|++.|+...+. .|+. . .++.....+...|++++|.+++++. ...|+
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 55 567788888889999999999999998753 3321 1 1122223344569999999999874 56777
Q ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 678 KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 678 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
...+|..++..+...|+.+.|...+++++++.+.....+. ...|.+|.++....++
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~--------a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQ--------AISYAEATRTQIQVQE 596 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 7767999999999999999999999999999886444222 2234566666555544
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=2.6e-15 Score=173.80 Aligned_cols=325 Identities=10% Similarity=-0.042 Sum_probs=266.2
Q ss_pred chHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC--CC-CeeeHHHHHHHHH
Q 002772 387 TTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME--VR-DTVSWNTMITGYT 463 (882)
Q Consensus 387 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~ 463 (882)
.-...++..+.+.|+++.|..++...+........ ....++......|++++|...|+.+. .| +...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34556777888999999999999999887644444 44445566777999999999999987 33 5567888889999
Q ss_pred hcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC-cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHH
Q 002772 464 ICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN-SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVG 542 (882)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 542 (882)
+.|++++|++.|++... +.|+ ...+..+...+...|+.++|...+..+......+.. .+
T Consensus 122 ~~g~~~~Ai~~l~~Al~-------------------l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~ 181 (656)
T PRK15174 122 KSKQYATVADLAEQAWL-------------------AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MI 181 (656)
T ss_pred HcCCHHHHHHHHHHHHH-------------------hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HH
Confidence 99999999999999986 4455 456677788899999999999999988776543333 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHH
Q 002772 543 SALVDMYAKCGCLNFARRVFDLMPV----RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALF 617 (882)
Q Consensus 543 ~~li~~y~k~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll 617 (882)
..+ ..+.+.|++++|...++.+.. ++...+..+...+...|++++|++.|+++++.. |+ ...+..+.
T Consensus 182 ~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~Lg 253 (656)
T PRK15174 182 ATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-------LDGAALRRSLG 253 (656)
T ss_pred HHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHHHHHHH
Confidence 333 347889999999999998763 233444556678889999999999999999854 54 56777788
Q ss_pred HHHhccCCHHH----HHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHh
Q 002772 618 AACSHSGMVSE----GMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRI 691 (882)
Q Consensus 618 ~a~~~~g~~~~----a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~ 691 (882)
..+...|++++ |...|++..+. .| +...+..+..+|.+.|++++|...+++. ...|+...++..+..++..
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ 330 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88999999986 89999999863 45 5778999999999999999999999876 4678887789999999999
Q ss_pred cCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 692 HQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 692 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
.|+.+.|...++++++.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 331 ~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 331 VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988877788999999999999999999876553
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.5e-13 Score=137.47 Aligned_cols=327 Identities=17% Similarity=0.224 Sum_probs=211.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHh--cCCCchhH-HHHHHHHHHhcCCCCChhHHhHHHHHHH
Q 002772 48 SLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVA--GIQDLSLG-KQIHAHVVKYGYGLSSVTVANTLVNMYG 124 (882)
Q Consensus 48 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~li~~y~ 124 (882)
-+.-.+.+|...++.-+|++|.+.|+..+...-..|++.-+ ...++.-+ .+.|-.|.+.|-. +..+ -
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~--S~~s--------W 190 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED--STSS--------W 190 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc--cccc--------c
Confidence 34456788999999999999999998888777666655433 23333322 2223333333322 2222 2
Q ss_pred hcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHH
Q 002772 125 KCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQ 204 (882)
Q Consensus 125 ~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~ 204 (882)
|.| ++.+ ++-+...++..+|.+||.|+|+--..+.|.++|++-.....+.+..+|+.+|.+.+ +..++.
T Consensus 191 K~G-~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-------~~~~K~ 259 (625)
T KOG4422|consen 191 KSG-AVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-------YSVGKK 259 (625)
T ss_pred ccc-cHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH-------hhccHH
Confidence 445 4443 44444445667899999999999999999999999999999999999999998844 445577
Q ss_pred HHHhhhhcC-CCchhHHHHHHHHHHhcCChhHHHHHH----hcCC----CCCcccHHHHHHHHHcCCChHH-HHHHHHHH
Q 002772 205 VHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAKTLF----KSFE----DRDLVSWNTIVSSLSQNDKFLE-AVMFLRQM 274 (882)
Q Consensus 205 ~~~~~~~~g-~~~~~~~~~Li~~y~~~g~~~~A~~~f----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m 274 (882)
+...|+... .||.+++|++++...+.|+++.|++-+ .+|+ +|...+|..+|..+++.++..+ |..+..+.
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 888888777 888888888888888888777765533 3333 3566666666666666555533 23333333
Q ss_pred HH----CCCCC----ChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccC
Q 002772 275 AL----RGIKP----DGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFIS 346 (882)
Q Consensus 275 ~~----~g~~p----d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 346 (882)
+. ..++| |..-|...+..|.+..+.+.|.+++........ |...|.. +
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N--------------~~~ig~~------~---- 395 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN--------------WKFIGPD------Q---- 395 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--------------hhhcChH------H----
Confidence 32 12222 223355556666666666666665544322110 0000000 0
Q ss_pred CCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCch
Q 002772 347 DKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDR 421 (882)
Q Consensus 347 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 421 (882)
....-|..+....++....+.-+..|..| .-.-+-|+..+...++++....+.++...+++..++..|.....
T Consensus 396 -~~~fYyr~~~~licq~es~~~~~~~Y~~l-VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 396 -HRNFYYRKFFDLICQMESIDVTLKWYEDL-VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 00123555666777777788888888888 55667788888888999888888888888888888877744433
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=5.6e-14 Score=162.64 Aligned_cols=441 Identities=8% Similarity=-0.006 Sum_probs=250.8
Q ss_pred HHHhcCChhHHHHHHhcCCCCCcc---cHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhH---hhHHHHhccCCCh
Q 002772 226 MYAKLGRVDDAKTLFKSFEDRDLV---SWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSI---ASVLPACSHLEML 299 (882)
Q Consensus 226 ~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ll~a~~~~~~~ 299 (882)
...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+ ..+...+...|+.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 466888888999888887753322 23377888888888899988888877 3332222 2224466677888
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhc--CCChHHHHHHHHHHH
Q 002772 300 DTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQ--NEYDEEALMLFIKME 377 (882)
Q Consensus 300 ~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~ 377 (882)
+.|.++++.+++.. |.+..++..|+..|...++.++|...++++...+......+..+|.. .++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl- 195 (822)
T PRK14574 119 DQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA- 195 (822)
T ss_pred HHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH-
Confidence 88888888888875 56667777777888888888888888887776554433334444444 44454577777777
Q ss_pred HHcCCCCCc-chHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHH
Q 002772 378 EVAGLWPNA-TTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWN 456 (882)
Q Consensus 378 ~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 456 (882)
....|+. ..+.....+..+.|-...|.++..+- |+..+-..... =+.+.|.+..+....++.
T Consensus 196 --l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~-----l~~~~~a~~vr~a~~~~~---- 258 (822)
T PRK14574 196 --VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ-----LERDAAAEQVRMAVLPTR---- 258 (822)
T ss_pred --HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH-----HHHHHHHHHHhhcccccc----
Confidence 2234443 33344555555555555554443331 11111000000 001111111111110000
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcch-----HhhHHHhhcCcchHHHHHHHHH
Q 002772 457 TMITGYTICG---QHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSIT-----LMTVLPGCGALSALAKGKEIHA 528 (882)
Q Consensus 457 ~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t-----~~~ll~a~~~~~~~~~a~~i~~ 528 (882)
...+ -.+.|+.-++.+.. . .+-.|.... ..--+-++...++..++.+.++
T Consensus 259 ------~~~~r~~~~d~ala~~~~l~~---~-------------~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 259 ------SETERFDIADKALADYQNLLT---R-------------WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred ------cchhhHHHHHHHHHHHHHHHh---h-------------ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0011 23455555666554 1 012232222 1233456777788888888888
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---------ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 002772 529 YAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVR---------NVITWNVIIMAYGMHGEGQEVLELLKNMVAE 599 (882)
Q Consensus 529 ~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 599 (882)
.+...+.+....+--++.++|...+++++|..+|.++... +......|.-+|...+++++|..+++++.+.
T Consensus 317 ~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 317 AMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 8888777666677788888888888888888888876421 2222456778888888888888888888763
Q ss_pred CC--------CCCcccCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHH
Q 002772 600 GS--------RGGEVKPNEV-TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLIN 670 (882)
Q Consensus 600 g~--------~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~ 670 (882)
-. +.....||-. .+..+...+...|++.+|++.++.+.. .-+-|......+.+++...|+..+|++.++
T Consensus 397 ~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 397 TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 20 0000112211 223334445555666666666666653 223345555555555555666666655554
Q ss_pred hC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 002772 671 MM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 671 ~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
.. ...|++..+...++.+....++.+.|+...+.+++..|+++.
T Consensus 475 ~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 475 AVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 43 234554444445555555555555565555556666665553
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=4.4e-13 Score=134.19 Aligned_cols=447 Identities=12% Similarity=0.060 Sum_probs=281.7
Q ss_pred ceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHH
Q 002772 145 QVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALM 224 (882)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li 224 (882)
+++=|.|+.. ...|.+..+.-+|+.|.+.|+..+...-..++...+......-.-.-.+-|-.+.+.|+.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 4456666654 45788899999999999999988887777777664433111111122233444444553333333
Q ss_pred HHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHH
Q 002772 225 AMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKE 304 (882)
Q Consensus 225 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 304 (882)
|.|++.+ ++-+...+...+|..||.|+|+--..+.|.++|++-.....+.+..+|+.+|.+-+-. .+++
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 5566554 4445555577899999999999999999999999999999999999999999986644 3488
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCC
Q 002772 305 IHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWP 384 (882)
Q Consensus 305 ~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 384 (882)
+...|+... ..||..++|+++...++.|+++.|++. |++++.+| +.-|+.|
T Consensus 260 Lv~EMisqk-m~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~Em-KeiGVeP 310 (625)
T KOG4422|consen 260 LVAEMISQK-MTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEM-KEIGVEP 310 (625)
T ss_pred HHHHHHHhh-cCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHH-HHhCCCc
Confidence 889999888 899999999999999999998887654 45666677 6677777
Q ss_pred CcchHhhHHhHhhcCCCCcc-hhhHHHHHHH----hCCC----CchHHHHHHHHHHHhcCChHHHHHHHhhCCCC-----
Q 002772 385 NATTMSSVVPACVRSEAFPD-KEGIHGHAIK----LGLG----RDRYVQNALMDMYSRMGRIEISKTIFDDMEVR----- 450 (882)
Q Consensus 385 ~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~----~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~----- 450 (882)
...+|..+|.-+++.++... +..+..++.. ..+. .|...+..-++.+.+..+.+-|.++-.-....
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 77777777776666665533 3333333332 1122 23445555666666677766666655443311
Q ss_pred ------CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHH
Q 002772 451 ------DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGK 524 (882)
Q Consensus 451 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 524 (882)
...-|..+....++....+.-+..|+.|+. . -+-|+..+...+++|....+.++...
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP---~--------------~y~p~~~~m~~~lrA~~v~~~~e~ip 453 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP---S--------------AYFPHSQTMIHLLRALDVANRLEVIP 453 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c--------------eecCCchhHHHHHHHHhhcCcchhHH
Confidence 122355566777888888888999999987 5 67899999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHcc-CChhHH-HHHHHHHHHcCCC
Q 002772 525 EIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMH-GEGQEV-LELLKNMVAEGSR 602 (882)
Q Consensus 525 ~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A-~~l~~~m~~~g~~ 602 (882)
+++..++..|.........-+...+++.. +.|+...-..+-..+++. -++.++ ...-.+|.+..
T Consensus 454 Riw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~-- 519 (625)
T KOG4422|consen 454 RIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD-- 519 (625)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--
Confidence 99988888775544333333332222221 022211111111111110 011111 12223444433
Q ss_pred CCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHH---HHHHhhccCCHHHHHHHHHhC
Q 002772 603 GGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYAC---VVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 603 ~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~---li~~l~r~g~~~eA~~~~~~m 672 (882)
-.....+.++..+.+.|..++|.++|....+++.-.|.....++ +++.-.+....-.|...++-|
T Consensus 520 -----~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 520 -----WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred -----CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33334444555566667777777777766554343444444443 334444555666666666555
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.69 E-value=1.9e-13 Score=161.93 Aligned_cols=370 Identities=12% Similarity=-0.000 Sum_probs=240.2
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHHhcCC---CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHH
Q 002772 216 NTFIMNALMAMYAKLGRVDDAKTLFKSFE---DRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPA 292 (882)
Q Consensus 216 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 292 (882)
+...+..+...+.+.|++++|.++|+... ..+...+..+...+...|++++|+..+++..+. .|+...+..+..+
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~ 125 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYV 125 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34446677777888888888888888743 234556777778888888888888888888775 3433226666667
Q ss_pred hccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCce--------ehHHHHHHHh---
Q 002772 293 CSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIA--------LWNAMITGYG--- 361 (882)
Q Consensus 293 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~--------~~~~li~~~~--- 361 (882)
+...|+.+.|...++.+++.. |.+..+...+...+...|..+.|...++.... +.. ....++....
T Consensus 126 l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccc
Confidence 778888888888888888875 66677777788888888888888888887765 211 1222222222
Q ss_pred --cCCCh---HHHHHHHHHHHHHcCCCCCcch-Hhh----HHhHhhcCCCCcchhhHHHHHHHhCCC-CchHHHHHHHHH
Q 002772 362 --QNEYD---EEALMLFIKMEEVAGLWPNATT-MSS----VVPACVRSEAFPDKEGIHGHAIKLGLG-RDRYVQNALMDM 430 (882)
Q Consensus 362 --~~g~~---~~A~~l~~~m~~~~g~~p~~~t-~~~----ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~ 430 (882)
..+++ ++|++.++.+.......|+... +.. .+.++...+++++|+..++.+.+.+-. |+. ....+...
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 22233 6788888888433233443321 111 133445567788888888887776532 221 22224667
Q ss_pred HHhcCChHHHHHHHhhCCCCCe-------eeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC
Q 002772 431 YSRMGRIEISKTIFDDMEVRDT-------VSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN 503 (882)
Q Consensus 431 y~~~g~~~~A~~~~~~m~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~ 503 (882)
|...|++++|...|+++...+. ..+..+..++.+.|++++|+++++++.. ..++.
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~------------------~~P~~ 343 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN------------------NSPPF 343 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh------------------cCCce
Confidence 7788888888888777653221 2244455567777888888888887765 22111
Q ss_pred cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHH
Q 002772 504 SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATD---VVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVII 577 (882)
Q Consensus 504 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li 577 (882)
...+... .-.|+ ...+..+...+...|++++|+++|+++. +.+...+..+.
T Consensus 344 ~~~~~~~-----------------------~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA 400 (765)
T PRK10049 344 LRLYGSP-----------------------TSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYA 400 (765)
T ss_pred EeecCCC-----------------------CCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 1111000 00122 2234556677778888888888888765 44567778888
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 002772 578 MAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSEGMDLFYKMKDD 639 (882)
Q Consensus 578 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 639 (882)
..+...|++++|++.+++.+. ..||. ..+......+...|++++|...++.+.+.
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~-------l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEV-------LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHh-------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 888888888888888888887 44764 34455555677788888888888888865
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=4.9e-11 Score=125.88 Aligned_cols=507 Identities=13% Similarity=0.081 Sum_probs=341.1
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCC
Q 002772 166 EAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFED 245 (882)
Q Consensus 166 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 245 (882)
.+++..++. -|+.+. |-++...+ .+.+.++.++...++.-+.+...|.+ |++..-++.|.++++...+
T Consensus 367 RVlRKALe~--iP~sv~---LWKaAVel---E~~~darilL~rAveccp~s~dLwlA----larLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 367 RVLRKALEH--IPRSVR---LWKAAVEL---EEPEDARILLERAVECCPQSMDLWLA----LARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHh--CCchHH---HHHHHHhc---cChHHHHHHHHHHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 444444432 354443 23344444 55555777777777666555555554 4455567788888876654
Q ss_pred ---CCcccHHHHHHHHHcCCChHHHHHHHHH----HHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCc
Q 002772 246 ---RDLVSWNTIVSSLSQNDKFLEAVMFLRQ----MALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDN 318 (882)
Q Consensus 246 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 318 (882)
.+...|-+-...=-.+|+.+...++..+ +...|+..+...|..=..+|-..|..-....+...++.-| +...
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigig-vEee 513 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIG-VEEE 513 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhc-cccc
Confidence 4777887777666778888888887765 4567898888888888888888888888888888888877 4332
Q ss_pred --hhHHHHHHHHhhcCCChHHHHHHHhccCC---CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHH
Q 002772 319 --SFVGSALVDMYCNCREVECGRRVFDFISD---KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVV 393 (882)
Q Consensus 319 --~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 393 (882)
..+++.-...+.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++... .-|-
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~---~~pk-------- 582 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE---QCPK-------- 582 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH---hCCc--------
Confidence 34566666667777777777777665443 2334565555555555666666666666521 1121
Q ss_pred hHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCC---CeeeHHHHHHHHHhcCCHHH
Q 002772 394 PACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVR---DTVSWNTMITGYTICGQHGD 470 (882)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~ 470 (882)
....+-....-+-..|++..|+.++.+.-+. +...|-+-+..-..+.++++
T Consensus 583 --------------------------ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 583 --------------------------AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELER 636 (913)
T ss_pred --------------------------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHH
Confidence 1222223333334445555555554444311 23345555555555555555
Q ss_pred HHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 002772 471 ALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYA 550 (882)
Q Consensus 471 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 550 (882)
|..+|.+... ..|+...|..-..----+++.++|.+++...++. ++.-...|-.+.+.|-
T Consensus 637 aR~llakar~-------------------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 637 ARDLLAKARS-------------------ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhc-------------------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 5555555542 3344444444444444455556666666555543 2333557777888888
Q ss_pred hcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHH
Q 002772 551 KCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVS 627 (882)
Q Consensus 551 k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~ 627 (882)
+.++++.|...|..-. .| .+-.|-.|...=-+.|+..+|-.+|++....+ +-|...|...+..-.+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN------Pk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN------PKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC------CCcchhHHHHHHHHHHcCCHH
Confidence 8999999998888766 34 45567777777777888999999999988876 345677888888888999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 628 EGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 628 ~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
+|..+..+..+ ..+-+-..|.--|.+..+.++-..+.+.+++..-.| . +.-+....+.....++.|..-|+++++
T Consensus 771 ~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp--h-Vllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 771 QAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP--H-VLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccCCc--h-hHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999888887 455567778888888889888888888888764433 3 667777778888899999999999999
Q ss_pred CCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEe
Q 002772 708 LEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEF 755 (882)
Q Consensus 708 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~ 755 (882)
.+|++..++..+-..+...|.-++-.+++++.... .|.-|..|+.+
T Consensus 846 ~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 846 KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 99999999999999999999988888888866543 35556777644
No 30
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=6.6e-13 Score=144.45 Aligned_cols=638 Identities=12% Similarity=0.041 Sum_probs=366.3
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCC
Q 002772 63 LSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITE 142 (882)
Q Consensus 63 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~ 142 (882)
.++-.+...|+.|+..||.+++..|+..|+.+.|- ++..|.-.... ....+++.++......+ +.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLp-v~e~vf~~lv~sh~~An-d~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLP-VREGVFRGLVASHKEAN-DAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccccc-ccchhHHHHHhcccccc-cccCCC-------C
Confidence 45667888899999999999999999999999998 99988877765 77888999999988888 766554 6
Q ss_pred CCceeHHHHHHHHHhcCCchHHHHHHHH-HH-------HCCCCCChhhHHHHHHHhccCCcc----cchHHHHHHHHhhh
Q 002772 143 KDQVSWNSMIATLCRFGKWDLALEAFRM-ML-------YSNVEPSSFTLVSVALACSNLSRR----DGLRLGRQVHGNSL 210 (882)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~~~----~~~~~~~~~~~~~~ 210 (882)
|-..+|+.|..+|.+.||... ++..++ |. ..|+.--..-|...+..|-..-.+ .....-+.+.+..+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999765 333332 22 223322222222222222222100 00011122233333
Q ss_pred hcC-------CCchhHHHHHHHHHHh-cCChhHHHHHHhcCC-CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 002772 211 RVG-------EWNTFIMNALMAMYAK-LGRVDDAKTLFKSFE-DRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKP 281 (882)
Q Consensus 211 ~~g-------~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 281 (882)
+.+ ...++.. .++-... ...+++-...-.... .++..+|.+++..-..+|+.+.|..++.+|++.|+..
T Consensus 160 kll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 322 1111111 1111111 122333333333333 3788899999999999999999999999999999999
Q ss_pred ChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHh
Q 002772 282 DGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYG 361 (882)
Q Consensus 282 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 361 (882)
+.+-|..+|-+ .++......+...|...| +.|+..++..-+-...+.|....+....+.--.-....+..+.++..
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~g-v~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKG-VQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhc-CCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 99988888877 778888888889999999 88888888776666655444322221111000000112233333211
Q ss_pred cCCChH-----HHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCC---CCchHHHHHHHHHHHh
Q 002772 362 QNEYDE-----EALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGL---GRDRYVQNALMDMYSR 433 (882)
Q Consensus 362 ~~g~~~-----~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~Li~~y~~ 433 (882)
.+.+.+ -.+..+++. --.|+.... +..++..-....|.-+..+++.+.+...-. ..++..+..++.-|.+
T Consensus 314 a~k~l~~nl~~~v~~s~k~~-fLlg~d~~~-aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKL-FLLGTDILE-AIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHH-HHhccccch-HHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 111111 111122221 112222222 112222222235666666666666543222 1223344444444433
Q ss_pred cCC----------------------hHHHHHHHhhCC----------------CCCeeeH-----------HHHHHHHHh
Q 002772 434 MGR----------------------IEISKTIFDDME----------------VRDTVSW-----------NTMITGYTI 464 (882)
Q Consensus 434 ~g~----------------------~~~A~~~~~~m~----------------~~~~~~~-----------~~li~~~~~ 464 (882)
.-+ ..+..++..... .+....| +.++..++.
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 211 111111111110 1111222 223333444
Q ss_pred cCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHH--hcCCCchhHH
Q 002772 465 CGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIR--NMLATDVVVG 542 (882)
Q Consensus 465 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~ 542 (882)
.-+..+++..-+.... -.-| ..|..+++-|.....++.|..+.+++.. ..+..|..-+
T Consensus 472 e~n~lK~l~~~ekye~------------------~lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYED------------------LLFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred HHHHHHHHHHHHHHHH------------------HHhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 3334444433222222 1112 5688899999999999999999988764 3456788889
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC-----CCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-Cc----------
Q 002772 543 SALVDMYAKCGCLNFARRVFDLMP-----VRN-VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRG-GE---------- 605 (882)
Q Consensus 543 ~~li~~y~k~g~~~~A~~~~~~m~-----~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~-~~---------- 605 (882)
..+.+.+.+.+...++..++.++. .|+ ..+.--+.++-+..|+.+..-++++-....|... +|
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd 611 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDD 611 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccc
Confidence 999999999999999999999987 232 2334456667777888887777777766655321 11
Q ss_pred --------------ccCChhHHHHHHHH---------------------HhccCCHHHHHHHHHHhHHhcCCC-------
Q 002772 606 --------------VKPNEVTFIALFAA---------------------CSHSGMVSEGMDLFYKMKDDYGIE------- 643 (882)
Q Consensus 606 --------------~~pd~~t~~~ll~a---------------------~~~~g~~~~a~~~~~~m~~~~~~~------- 643 (882)
.+|.......+.+. |.+.|.+.++.++.+. .|+.
T Consensus 612 ~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~et----pG~r~r~~RDr 687 (1088)
T KOG4318|consen 612 QSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITET----PGVRCRNGRDR 687 (1088)
T ss_pred hhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcccc----CcccccCCCcc
Confidence 12222212222222 2222333333222211 1111
Q ss_pred --------C---------ChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcC---chhHHHHHHH
Q 002772 644 --------P---------SPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQ---NVEIGEIAAQ 703 (882)
Q Consensus 644 --------p---------~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~---~~~~a~~~~~ 703 (882)
| +..+..-|+..|.+.|+++.|..++.+++..|... ...-|+..++.+. ++-++....+
T Consensus 688 ~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~-~l~~LAsIlr~~n~evdvPe~q~e~e 766 (1088)
T KOG4318|consen 688 DTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPM-KLFHLASILRRMNEEVDVPEIQAETE 766 (1088)
T ss_pred ccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchH-HHHHHHHHHHhhchhccchhHHHHHH
Confidence 1 12223447778999999999999999999888888 7788888887776 5567777778
Q ss_pred HHhcCCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 002772 704 NLFLLEPDVASH---YVLLSNIYSSAQLWDKAMDVRKKMKEMGV 744 (882)
Q Consensus 704 ~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 744 (882)
++.++.|.++.+ |.-.+-+..+....+-|.+.+.+.+++..
T Consensus 767 kas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 767 KASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred HHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 888877665543 33333333333444477888888888744
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=4.4e-12 Score=147.14 Aligned_cols=429 Identities=8% Similarity=-0.003 Sum_probs=290.4
Q ss_pred cchHHHHHHHHhhhhcCCCch-hHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHH---HHHHHcCCChHHHHHHHH
Q 002772 197 DGLRLGRQVHGNSLRVGEWNT-FIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTI---VSSLSQNDKFLEAVMFLR 272 (882)
Q Consensus 197 ~~~~~~~~~~~~~~~~g~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~ 272 (882)
|+...|...+..+++..+.+. .++ .++..+...|+.++|+..++....|+...+..+ ...+...|++++|+++|+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888999999999998885543 444 899999999999999999999887755544443 346777899999999999
Q ss_pred HHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---C
Q 002772 273 QMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---K 349 (882)
Q Consensus 273 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~ 349 (882)
++.+.... +...+..+...+...++.++|.+.+..+.+.. ++...+..++..+...++..+|...++++.+. +
T Consensus 127 kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 127 SSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 99986422 24556677788889999999999999988754 44555566666666677776799999998764 4
Q ss_pred ceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHH
Q 002772 350 IALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMD 429 (882)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 429 (882)
...+..+..++.+.|-...|+++..+- |+.++=...... -.....+.++.+..++..- .
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~-------p~~f~~~~~~~l---------~~~~~a~~vr~a~~~~~~~-~---- 261 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKEN-------PNLVSAEHYRQL---------ERDAAAEQVRMAVLPTRSE-T---- 261 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhC-------ccccCHHHHHHH---------HHHHHHHHHhhcccccccc-h----
Confidence 456788888999999999998876543 443332211110 0011112222221111100 0
Q ss_pred HHHhcCChHHHHHHHhhCCC-----CCe-eeH----HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccC
Q 002772 430 MYSRMGRIEISKTIFDDMEV-----RDT-VSW----NTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLR 499 (882)
Q Consensus 430 ~y~~~g~~~~A~~~~~~m~~-----~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 499 (882)
.+.--.+.|..-++.+.. |.. ..| --.+.++...|++.++++.|+.|.. . +
T Consensus 262 --~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~---~--------------~ 322 (822)
T PRK14574 262 --ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA---E--------------G 322 (822)
T ss_pred --hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh---c--------------C
Confidence 000012233333333221 111 111 1234566677777777777777776 3 4
Q ss_pred CCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C----
Q 002772 500 PKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNM-----LATDVVVGSALVDMYAKCGCLNFARRVFDLMPV--R---- 568 (882)
Q Consensus 500 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~---- 568 (882)
.+.-..+-..+.+++...+.+++|..++..+.... ..++......|.-+|...+++++|..+++++.. |
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 44333466677777777778888888877776543 123444456788888888888888888887762 2
Q ss_pred -----------Ch-hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 002772 569 -----------NV-ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKM 636 (882)
Q Consensus 569 -----------~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 636 (882)
|- .....++..+...|+..+|++.++++.... +-|......+...+...|.+.+|++.++.+
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a------P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA------PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 122346777888999999999999998864 345667778888899999999999999776
Q ss_pred HHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCch
Q 002772 637 KDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKA 679 (882)
Q Consensus 637 ~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~ 679 (882)
.. +.|+ .......+..+...|++++|..+++.. ...|++.
T Consensus 477 ~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 477 ES---LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred hh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 63 4564 667778888888999999999888765 3456655
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=4.8e-11 Score=131.27 Aligned_cols=608 Identities=12% Similarity=0.092 Sum_probs=331.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHH
Q 002772 52 EARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMW 131 (882)
Q Consensus 52 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 131 (882)
+.-.|++++|.+++...++... -....|..|-..|-..|+.+.+... .++...+.|.|...|-.+-....+.| .++
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~--~llAAHL~p~d~e~W~~ladls~~~~-~i~ 224 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNF--WLLAAHLNPKDYELWKRLADLSEQLG-NIN 224 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHH--HHHHHhcCCCChHHHHHHHHHHHhcc-cHH
Confidence 3344999999999999988653 3566799999999999988877665 44455555688899999999999999 999
Q ss_pred HHHHHHhccCCCCceeHH---HHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHh
Q 002772 132 DVYKVFDRITEKDQVSWN---SMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGN 208 (882)
Q Consensus 132 ~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 208 (882)
.|+-.|.+..+.+..-|- --+..|-+.|+...|.+.|.+|.+.....|-.-+..++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i--------------------- 283 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI--------------------- 283 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH---------------------
Confidence 999999887653333233 34567788999999999999998753311111111111
Q ss_pred hhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCC-----CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCh
Q 002772 209 SLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFED-----RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDG 283 (882)
Q Consensus 209 ~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 283 (882)
-..+..|...++-+.|.+.++.... -+...+|.++..|.+...++.|......+......+|.
T Consensus 284 ------------~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 284 ------------RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred ------------HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence 1233445555555667666665443 23446788888888888888888888888763333332
Q ss_pred hhH----------------------h----hHHHHhccCCChhHHHHHHHHHHHhCC-CCCchhHHHHHHHHhhcCCChH
Q 002772 284 VSI----------------------A----SVLPACSHLEMLDTGKEIHAYALRNDI-LIDNSFVGSALVDMYCNCREVE 336 (882)
Q Consensus 284 ~t~----------------------~----~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~~Li~~y~~~g~~~ 336 (882)
.-+ . -+.-++.+....+....+.....+... ...+...+.-+.++|...|++.
T Consensus 352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~ 431 (895)
T KOG2076|consen 352 SEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYK 431 (895)
T ss_pred hhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHH
Confidence 211 0 111222333333444444444433331 1223344555555555555555
Q ss_pred HHHHHHhccCCC----CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHH
Q 002772 337 CGRRVFDFISDK----KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHA 412 (882)
Q Consensus 337 ~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 412 (882)
+|.++|..+... +...|--+..+|...|.+++|++.|...
T Consensus 432 ~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv------------------------------------ 475 (895)
T KOG2076|consen 432 EALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKV------------------------------------ 475 (895)
T ss_pred HHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHH------------------------------------
Confidence 555555555432 3334555555555555555555555555
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCee-----eH-------HHHHHHHHhcCCHHHHHHHHHHHhh
Q 002772 413 IKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTV-----SW-------NTMITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 413 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~-----~~-------~~li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
+... +.+..+--.|-..|-+.|+.++|.+.++.|..||.. .| -.....|.+.|+.++=+..-..|+.
T Consensus 476 l~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 476 LILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3332 223333445556666777777777777776655421 11 1223456667777665555555544
Q ss_pred hhhhhhcccc-----ccccccccCCCCCcchHhhHHHhhcCcchHHHHHH---HH---HHHHHhcCCCch--hHHHHHHH
Q 002772 481 MEEEKNRNNV-----YDLDETVLRPKPNSITLMTVLPGCGALSALAKGKE---IH---AYAIRNMLATDV--VVGSALVD 547 (882)
Q Consensus 481 ~~~~~~~~~~-----~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~---i~---~~~~~~g~~~~~--~~~~~li~ 547 (882)
......-.-. ........+.+-...+...+..+-.+.++.....+ -. ......|+..+. ..+.-++.
T Consensus 555 ~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~ 634 (895)
T KOG2076|consen 555 DFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELIL 634 (895)
T ss_pred HHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHH
Confidence 1111000000 00000000122222333333333333333211111 11 111112222221 24556777
Q ss_pred HHHhcCCHHHHHHHHhhCCC------CCh---hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh-HHHHHH
Q 002772 548 MYAKCGCLNFARRVFDLMPV------RNV---ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-TFIALF 617 (882)
Q Consensus 548 ~y~k~g~~~~A~~~~~~m~~------~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-t~~~ll 617 (882)
.+++.|+.++|..+...+.. ++. ..-..++.+....+++..|.+.++.|+..-... ..|... .|+..+
T Consensus 635 ~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~--~~~~q~~l~n~~~ 712 (895)
T KOG2076|consen 635 SLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY--LDVYQLNLWNLDF 712 (895)
T ss_pred HHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHH
Confidence 88888999999888877652 111 122345566677888888888888888751000 123222 233233
Q ss_pred HHHhc-----------------------------------cCCHHHHHHHHHHhHHhcCCCCChhHHH-HHHHHhh----
Q 002772 618 AACSH-----------------------------------SGMVSEGMDLFYKMKDDYGIEPSPDHYA-CVVDLLG---- 657 (882)
Q Consensus 618 ~a~~~-----------------------------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~l~---- 657 (882)
+..+. .+.+..|+.++-.... ..|+...++ ||.-++.
T Consensus 713 s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lglafih~a~ 789 (895)
T KOG2076|consen 713 SYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLINLCLGLAFIHLAL 789 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHH
Confidence 32222 3344555554444432 234422222 2222221
Q ss_pred ------ccCCHHHHHHHHHhC---CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc------------hH
Q 002772 658 ------RAGKVEDAYQLINMM---PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVAS------------HY 716 (882)
Q Consensus 658 ------r~g~~~eA~~~~~~m---~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~------------~~ 716 (882)
|.-.+-.+..++++- ...-+.-.+.-+++.+|..-|=+-.|...+++++++.|.+.. +-
T Consensus 790 qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA 869 (895)
T KOG2076|consen 790 QRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAA 869 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHH
Confidence 111223334444322 111112226677888888888888888899999988764432 22
Q ss_pred HHHHHHHHHcCCchHHHHHHHH
Q 002772 717 VLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 717 ~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
..|.-||.+.|+..-|..+.++
T Consensus 870 ~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 870 YNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred hhhhhhhccCCcHHHHHHHHHh
Confidence 3566788888888888877653
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=5.3e-12 Score=127.05 Aligned_cols=271 Identities=15% Similarity=0.107 Sum_probs=199.5
Q ss_pred HHHhcCChHHHHHHHhhCCCCCeeeHHH----HHH-HHHhcC-CHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC
Q 002772 430 MYSRMGRIEISKTIFDDMEVRDTVSWNT----MIT-GYTICG-QHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN 503 (882)
Q Consensus 430 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~----li~-~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~ 503 (882)
-|.+.|+++.|.+++.-...+|..+-++ |-. -|.+.| ++..|.+.-+..+. .-.-|
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln------------------~dryn 489 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN------------------IDRYN 489 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc------------------ccccC
Confidence 4677888888888777776555443222 211 223333 46666666666554 12222
Q ss_pred cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHH
Q 002772 504 SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAY 580 (882)
Q Consensus 504 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 580 (882)
....+.--+.....|++++|.+.+.++....-.-....|| +.-.|-+.|++++|+..|-++. ..++...-.+.+.|
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2222222233345688888888888887665333333443 3445778899999999998765 56777777888889
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccC
Q 002772 581 GMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAG 660 (882)
Q Consensus 581 ~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g 660 (882)
-...+..+|++++-+.... ++-|...+.-|...|-+.|+-.+|.+++-.--+ -++-+.++...|..-|....
T Consensus 569 e~led~aqaie~~~q~~sl------ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSL------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHhhCHHHHHHHHHHhccc------CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhH
Confidence 9999999999999887663 344567788888999999999999988766543 45667899999999999999
Q ss_pred CHHHHHHHHHhCC-CCCCchhhHHHHHHHH-HhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCC
Q 002772 661 KVEDAYQLINMMP-PEFDKAGAWSSLLGAC-RIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQL 728 (882)
Q Consensus 661 ~~~eA~~~~~~m~-~~p~~~~~~~~ll~a~-~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 728 (882)
-.++|..+|++.. +.|+.. -|.-++..| ++.||.+.|...++.+-...|.+....-.|..+....|.
T Consensus 641 f~ekai~y~ekaaliqp~~~-kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 641 FSEKAINYFEKAALIQPNQS-KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999874 688888 999998876 677899999999999999999999998889988888775
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=5.2e-10 Score=123.29 Aligned_cols=517 Identities=11% Similarity=0.085 Sum_probs=330.4
Q ss_pred cchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhc---CCCCCcccHHHHHHHHHcCCChHHHHHHHHH
Q 002772 197 DGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKS---FEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQ 273 (882)
Q Consensus 197 ~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~---m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 273 (882)
|+++.|..+...+++..+.+...|..|...|-..|+.+++...+-. +...|..-|-.+-.-..+.|++++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5566666666666666666666677777777777777777665533 2234556676666666777777777777776
Q ss_pred HHHCCCCCCh-hhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHH----HHHHhhcCCChHHHHHHHhccCC-
Q 002772 274 MALRGIKPDG-VSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSA----LVDMYCNCREVECGRRVFDFISD- 347 (882)
Q Consensus 274 m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~----Li~~y~~~g~~~~A~~~f~~m~~- 347 (882)
..+. .|+. ..+--=..-|-+.|+...|..-+.++.... .+.|..-.-. .+..|...++-+.|.+.++.-..
T Consensus 233 AI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 233 AIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 6654 2322 222333344556677777777777766654 2222222222 23445555666777776665544
Q ss_pred -C---CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----------------------CCcchHh----hHHhHhh
Q 002772 348 -K---KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLW----------------------PNATTMS----SVVPACV 397 (882)
Q Consensus 348 -~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~----------------------p~~~t~~----~ll~~~~ 397 (882)
. +...+|.++..|.+...++.|......+ ...... |+...|. -+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~-~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDD-RNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHH-hccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2 2335777888888888888888777777 331111 1212221 2223345
Q ss_pred cCCCCcchhhHHHHHHHhC--CCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCC----CeeeHHHHHHHHHhcCCHHHH
Q 002772 398 RSEAFPDKEGIHGHAIKLG--LGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVR----DTVSWNTMITGYTICGQHGDA 471 (882)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A 471 (882)
+....+....+.....+.. ...+...|.-+.++|...|++.+|.++|..+... +...|--+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 5666677777777777777 4456678888999999999999999999988733 567899999999999999999
Q ss_pred HHHHHHHhhhhhhhhccccccccccccCCCCCcc-hHhhHHHhhcCcchHHHHHHHHHHHH--------HhcCCCchhHH
Q 002772 472 LMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSI-TLMTVLPGCGALSALAKGKEIHAYAI--------RNMLATDVVVG 542 (882)
Q Consensus 472 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~ 542 (882)
++.|...+. ..|+.. .-.+|-..+..+|+.++|.+.+..+. ..+..|+..+.
T Consensus 469 ~e~y~kvl~-------------------~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 469 IEFYEKVLI-------------------LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred HHHHHHHHh-------------------cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 999999986 455543 33344455677899999999988743 34566667777
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---------C-----------------ChhhHHHHHHHHHccCChhHHHHH----
Q 002772 543 SALVDMYAKCGCLNFARRVFDLMPV---------R-----------------NVITWNVIIMAYGMHGEGQEVLEL---- 592 (882)
Q Consensus 543 ~~li~~y~k~g~~~~A~~~~~~m~~---------~-----------------~~~~~~~li~~~~~~g~~~~A~~l---- 592 (882)
--..++|.+.|+.++-..+-..|.. | +..+...++.+-.+.++.....+-
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~ 609 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG 609 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccch
Confidence 7778899999998875555444431 1 111112223333333221111110
Q ss_pred --HHHHHHcCCCCCcccCCh--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh----HHHHHHHHhhccCCHHH
Q 002772 593 --LKNMVAEGSRGGEVKPNE--VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD----HYACVVDLLGRAGKVED 664 (882)
Q Consensus 593 --~~~m~~~g~~~~~~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~l~r~g~~~e 664 (882)
+.--...| +.-+. ..|.-++.++.+.+++++|..+...+...+-+.-+.. .-.+++.+-...+++.+
T Consensus 610 ~~~~~~e~~~-----Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~ 684 (895)
T KOG2076|consen 610 TEFRAVELRG-----LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGD 684 (895)
T ss_pred hhhhhhhhcc-----CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHH
Confidence 01111111 11221 2356677788899999999999999887644433333 23456666778899999
Q ss_pred HHHHHHhCC------CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC-CchHHHHHHHHHHcCCchHHHHHHH
Q 002772 665 AYQLINMMP------PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV-ASHYVLLSNIYSSAQLWDKAMDVRK 737 (882)
Q Consensus 665 A~~~~~~m~------~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~ 737 (882)
|.+.++.|- ..|.....|+...+....+++-..-.+...+++...|++ +..+..-+......+.|..|+..+-
T Consensus 685 a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ 764 (895)
T KOG2076|consen 685 AFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYM 764 (895)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHH
Confidence 999998872 245555588877777888887777777777788888887 5556667777888899999988666
Q ss_pred HHHh
Q 002772 738 KMKE 741 (882)
Q Consensus 738 ~m~~ 741 (882)
..-.
T Consensus 765 ra~~ 768 (895)
T KOG2076|consen 765 RAFR 768 (895)
T ss_pred HHHH
Confidence 5443
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=1.5e-09 Score=114.87 Aligned_cols=369 Identities=14% Similarity=0.086 Sum_probs=226.9
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-ChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 002772 249 VSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKP-DGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVD 327 (882)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~ 327 (882)
.+|+.--..|.+.+.++-|..+|...++. .| +...|..+...-..-|..+....+++.++.. .+.....+-....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ak 592 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAK 592 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHH
Confidence 46666667777777777777777666553 23 2333444444444456666667777777665 3555566666667
Q ss_pred HhhcCCChHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcc
Q 002772 328 MYCNCREVECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPD 404 (882)
Q Consensus 328 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~ 404 (882)
-+...|++..|+.++...-+. +...|-+-+..-..+..+++|..+|.+. ....|+...|.--+..---.++.++
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka---r~~sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA---RSISGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH---hccCCcchhhHHHhHHHHHhhhHHH
Confidence 777778888888777665442 3446888888888888888888888888 3455666555444444444556666
Q ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Q 002772 405 KEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEE 484 (882)
Q Consensus 405 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 484 (882)
|.++++..++. ++.-...|-.+...|-+.++++.|++.|. .-.+
T Consensus 670 A~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~-------------------------------~G~k---- 713 (913)
T KOG0495|consen 670 ALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYL-------------------------------QGTK---- 713 (913)
T ss_pred HHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHH-------------------------------hccc----
Confidence 66666655553 22223444444444555555555544443 3221
Q ss_pred hhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 002772 485 KNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDL 564 (882)
Q Consensus 485 ~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 564 (882)
.-|+ .+..|-.|.+.=-+.|.+-.|..+|++
T Consensus 714 ---------------~cP~----------------------------------~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 714 ---------------KCPN----------------------------------SIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred ---------------cCCC----------------------------------CchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 2233 233344444444555566666666665
Q ss_pred CC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 002772 565 MP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYG 641 (882)
Q Consensus 565 m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 641 (882)
.. +.|...|-..|..-.+.|..++|..+..+.++. .+-+...|..-|...-+.++-.....-++ .
T Consensus 745 arlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe------cp~sg~LWaEaI~le~~~~rkTks~DALk------k 812 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE------CPSSGLLWAEAIWLEPRPQRKTKSIDALK------K 812 (913)
T ss_pred HHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCccchhHHHHHHhccCcccchHHHHHHH------h
Confidence 44 335566666666666666666666666666654 23334455555555555444333222222 2
Q ss_pred CCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHH
Q 002772 642 IEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLS 720 (882)
Q Consensus 642 ~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 720 (882)
.+-|..+.-.+..++-...+++.|.+.|.+. ...||..++|.-+...+.+||.-+.-..++.+....+|.....+...+
T Consensus 813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 2345555666666666777777777777654 467888889999999999999999999999999999998877766665
Q ss_pred H
Q 002772 721 N 721 (882)
Q Consensus 721 ~ 721 (882)
.
T Consensus 893 K 893 (913)
T KOG0495|consen 893 K 893 (913)
T ss_pred h
Confidence 4
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=5e-14 Score=146.91 Aligned_cols=256 Identities=16% Similarity=0.133 Sum_probs=114.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCC-CCCcchHhhHHH-hhcCcchHHHHHHHHHHHHHhcC
Q 002772 458 MITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRP-KPNSITLMTVLP-GCGALSALAKGKEIHAYAIRNML 535 (882)
Q Consensus 458 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~-~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~ 535 (882)
+...+.+.|++++|++++.+... .. .|+...|..++. .+...++.+.|.+.+..+...+.
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~------------------~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~ 75 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQ------------------KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc------------------ccccccccccccccccccccccccccccccccccccccc
Confidence 35567788999999999976554 34 577666666554 45568899999999999988764
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHH
Q 002772 536 ATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTF 613 (882)
Q Consensus 536 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~ 613 (882)
. ++..+..++.. ...+++++|.+++.... .++...|..++..+.+.|+++++.+++++...... .+++...|
T Consensus 76 ~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~ 149 (280)
T PF13429_consen 76 A-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA----APDSARFW 149 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------T-HHHH
T ss_pred c-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC----CCCCHHHH
Confidence 4 66677788877 78999999999988764 56677788889999999999999999999886430 34566677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHh
Q 002772 614 IALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMMP-PEFDKAGAWSSLLGACRI 691 (882)
Q Consensus 614 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~~ll~a~~~ 691 (882)
..+...+.+.|+.++|++.+++..+. .| +......++..+...|+.+++.++++... ..|+++..|..+..++..
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 78888899999999999999999874 56 47788999999999999999888877652 124444499999999999
Q ss_pred cCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 692 HQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 692 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
.|+.+.|...++++++.+|+|+.....++.++...|+.++|.+++.+.-
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999988653
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=1.2e-10 Score=127.35 Aligned_cols=372 Identities=13% Similarity=0.015 Sum_probs=201.8
Q ss_pred CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHH
Q 002772 348 KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNAL 427 (882)
Q Consensus 348 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 427 (882)
++..++.+++.+-..+|+.+.|..++.+| +..|++.+..-|..++-+ .++....+.+..-|.+.|+.|+..|+..-
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~em-ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEM-KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHH-HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 67888999999999999999999999999 889999999998888866 78888888999999999999999999887
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchH
Q 002772 428 MDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITL 507 (882)
Q Consensus 428 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~ 507 (882)
+-...+.|....+.+. .+....+++-..+-+-.| ..|.+.++.-...-.-+.... .-..|..-....|
T Consensus 278 vip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~-----~fLlg~d~~~aiw 345 (1088)
T KOG4318|consen 278 VIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKK-----LFLLGTDILEAIW 345 (1088)
T ss_pred HHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhH-----HHHhccccchHHH
Confidence 7777776653333222 122222222222222223 222222222111000000000 0000221111111
Q ss_pred hhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh-HHHHHHHHHc---c
Q 002772 508 MTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVIT-WNVIIMAYGM---H 583 (882)
Q Consensus 508 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~-~~~li~~~~~---~ 583 (882)
.. ..-....|.-+...++.+.+..- ....-+.-+++|. +.+.+.|.+...+.... ++ .-.+... .
T Consensus 346 s~-c~~l~hQgk~e~veqlvg~l~np----t~r~s~~~V~a~~-----~~lrqyFrr~e~~~~~~i~~-~~qgls~~l~s 414 (1088)
T KOG4318|consen 346 SM-CEKLRHQGKGEEVEQLVGQLLNP----TLRDSGQNVDAFG-----ALLRQYFRRIERHICSRIYY-AGQGLSLNLNS 414 (1088)
T ss_pred HH-HHHHHHcCCCchHHHHHhhhcCC----ccccCcchHHHHH-----HHHHHHHHHHHhhHHHHHHH-HHHHHHhhhch
Confidence 11 11111244444444544444321 1111111111111 22344444444322111 11 1111111 1
Q ss_pred CChhHHHHHHHHH------------HHcCCCCCcccC-------ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 002772 584 GEGQEVLELLKNM------------VAEGSRGGEVKP-------NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP 644 (882)
Q Consensus 584 g~~~~A~~l~~~m------------~~~g~~~~~~~p-------d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 644 (882)
....+..++.... ..... .....| =...-+.++..|.+.-+..+++..-+..... -+ |
T Consensus 415 e~tp~vsell~~lrkns~lr~lv~Lss~El-er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf-~ 491 (1088)
T KOG4318|consen 415 EDTPRVSELLENLRKNSFLRQLVGLSSTEL-ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LF-A 491 (1088)
T ss_pred hhhHHHHHHHHHhCcchHHHHHhhhhHHHH-hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-h
Confidence 1111222221111 00000 000111 1112344555666555555555443333321 22 2
Q ss_pred ChhHHHHHHHHhhccCCHHHHHHHHHhCC-----CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhc---CCCCCCchH
Q 002772 645 SPDHYACVVDLLGRAGKVEDAYQLINMMP-----PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFL---LEPDVASHY 716 (882)
Q Consensus 645 ~~~~~~~li~~l~r~g~~~eA~~~~~~m~-----~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~---l~p~~~~~~ 716 (882)
..|..||+.+.+..++++|..+..+.. ..-+.. -+..+.....+++.+..+..+.+...+ ..|......
T Consensus 492 --g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~-~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~ 568 (1088)
T KOG4318|consen 492 --GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLP-LMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIIL 568 (1088)
T ss_pred --hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccH-hHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHH
Confidence 679999999999999999999998873 122333 556777777788877777777665444 455556667
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEE
Q 002772 717 VLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWI 753 (882)
Q Consensus 717 ~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i 753 (882)
..+-|-.+..|+.+...++.+-+...|+.- .|--|.
T Consensus 569 f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 569 FPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred HHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence 778888899999999999999999988866 455553
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=1.5e-11 Score=131.22 Aligned_cols=245 Identities=13% Similarity=0.097 Sum_probs=200.4
Q ss_pred CHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcC--CCchhHHHH
Q 002772 467 QHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNML--ATDVVVGSA 544 (882)
Q Consensus 467 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~ 544 (882)
+..+|+.+|..... .+.-......-+..+|-.++++++++.+|+.+.+... .-+..+|++
T Consensus 334 ~~~~A~~~~~klp~------------------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST 395 (638)
T KOG1126|consen 334 NCREALNLFEKLPS------------------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYST 395 (638)
T ss_pred HHHHHHHHHHhhHH------------------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHH
Confidence 46789999999544 3444456667788899999999999999999987532 236778887
Q ss_pred HHHHHHhcCCHHH-HHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC-ChhHHHHHHHHHhc
Q 002772 545 LVDMYAKCGCLNF-ARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP-NEVTFIALFAACSH 622 (882)
Q Consensus 545 li~~y~k~g~~~~-A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p-d~~t~~~ll~a~~~ 622 (882)
.+--+-+.=.+.. |..+.+.+ +-...+|.++.+.|..+++.+.|++.|++.++ +.| ...+|+.+..-+..
T Consensus 396 ~LWHLq~~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-------ldp~faYayTLlGhE~~~ 467 (638)
T KOG1126|consen 396 TLWHLQDEVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-------LDPRFAYAYTLLGHESIA 467 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-------cCCccchhhhhcCChhhh
Confidence 7755543322222 33333332 34578999999999999999999999999998 557 57888888888888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHH---HHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHH
Q 002772 623 SGMVSEGMDLFYKMKDDYGIEPSPDHYACV---VDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIG 698 (882)
Q Consensus 623 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l---i~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a 698 (882)
...+|.|...|+..+ ..+..||+++ .-.|.|.++++.|+-.|++. .+.|.+..+...+...+.+.|+.|.|
T Consensus 468 ~ee~d~a~~~fr~Al-----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKAL-----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred hHHHHhHHHHHHhhh-----cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH
Confidence 899999999998776 3577888875 55689999999999999876 68888886777888889999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 699 EIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 699 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
...+++++-++|.|+-.-+..+.++...+++++|+..++++++-
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999884
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=5.3e-10 Score=114.61 Aligned_cols=212 Identities=16% Similarity=0.131 Sum_probs=172.1
Q ss_pred cchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHH
Q 002772 517 LSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELL 593 (882)
Q Consensus 517 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 593 (882)
.|+.-.+.+-++.+++....+.. .|--+..+|....+.++..+.|+... +.|..+|..-...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46677777788888776544332 36667778999999999999999876 446777877777777789999999999
Q ss_pred HHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC
Q 002772 594 KNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 594 ~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m 672 (882)
++.+. +.|+ ...|.-+-.+.-+.+.++++...|++.++ .++-.++.|+-....|...+++++|.+.++..
T Consensus 418 ~Kai~-------L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 418 QKAIS-------LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHhh-------cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99998 4465 56788888888889999999999999998 45667899999999999999999999999864
Q ss_pred -CCCCC------chh--hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 673 -PPEFD------KAG--AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 673 -~~~p~------~~~--~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
..+|. ++. +-.+++..-.+ +|+..|+...+++++++|....+|..|+.+-.+.|+.++|.++|++-
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44554 110 33344433333 89999999999999999999999999999999999999999999864
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=7.1e-11 Score=126.13 Aligned_cols=277 Identities=13% Similarity=0.024 Sum_probs=212.6
Q ss_pred ChHHHHHHHhhCCC--CCeeeH--HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHH
Q 002772 436 RIEISKTIFDDMEV--RDTVSW--NTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVL 511 (882)
Q Consensus 436 ~~~~A~~~~~~m~~--~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll 511 (882)
+..+|...|..++. .|+. | .-+..+|...+++++|.++|+.+.+... -..-+...|+++|
T Consensus 334 ~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p---------------~rv~~meiyST~L 397 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEP---------------YRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------ccccchhHHHHHH
Confidence 46788888888652 3444 4 3456789999999999999999976210 0112345677777
Q ss_pred HhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhH
Q 002772 512 PGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQE 588 (882)
Q Consensus 512 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~ 588 (882)
..+-+.-. ...+.+-.-.--+..+.+|.++.++|+-+++.+.|++.|++.. +| ...+|+-+..-+.....+|.
T Consensus 398 WHLq~~v~----Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~ 473 (638)
T KOG1126|consen 398 WHLQDEVA----LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDK 473 (638)
T ss_pred HHHHhhHH----HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHh
Confidence 65533211 1122211112234578899999999999999999999999987 33 67888888888899999999
Q ss_pred HHHHHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHH
Q 002772 589 VLELLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAY 666 (882)
Q Consensus 589 A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~ 666 (882)
|...|+..+. +.|+. -.|..+...|.+.++++.|+-.|+++. .+.|. .....++...+-+.|+.|+|+
T Consensus 474 a~~~fr~Al~-------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 474 AMKSFRKALG-------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred HHHHHHhhhc-------CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHH
Confidence 9999999976 44654 477788889999999999999999987 56775 666777888999999999999
Q ss_pred HHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 667 QLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 667 ~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+++++. ..+|.++-.----+..+...++.++|...+|++.++-|+++..|.+|+.+|.+.|+.+.|+.-+..+.+.
T Consensus 544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 999986 4455554233344556677789999999999999999999999999999999999999999776665543
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.6e-09 Score=110.59 Aligned_cols=357 Identities=11% Similarity=0.066 Sum_probs=228.0
Q ss_pred CCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHh--hHH
Q 002772 316 IDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMS--SVV 393 (882)
Q Consensus 316 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~--~ll 393 (882)
..|.+..-.....+-+.|....|+..|.....+-+..|.+.+....-.-+.+.+..+. .+...|..-+. .+.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~------~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV------VGLPSDMHWMKKFFLK 234 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH------hcCcccchHHHHHHHH
Confidence 4444444444455566777888888887766655555555544322222222221111 12222211111 123
Q ss_pred hHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHH
Q 002772 394 PACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALM 473 (882)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 473 (882)
.++......+++.+-.......|++.+...-+-...++-...++|.|..+|+++...|+.-
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR------------------- 295 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR------------------- 295 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-------------------
Confidence 3444444555555555556666665555544444444445555555555555554322110
Q ss_pred HHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 002772 474 LLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCG 553 (882)
Q Consensus 474 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g 553 (882)
--|..||+.+|-.-.....+.---+....+ . +--+.+...+.+-|+-.+
T Consensus 296 ---------------------------l~dmdlySN~LYv~~~~skLs~LA~~v~~i--d--KyR~ETCCiIaNYYSlr~ 344 (559)
T KOG1155|consen 296 ---------------------------LDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--D--KYRPETCCIIANYYSLRS 344 (559)
T ss_pred ---------------------------chhHHHHhHHHHHHhhhHHHHHHHHHHHHh--c--cCCccceeeehhHHHHHH
Confidence 012234444443322221111111111111 1 123456667778888889
Q ss_pred CHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHH
Q 002772 554 CLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGM 630 (882)
Q Consensus 554 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~ 630 (882)
+.+.|...|++.. +.-...|+-|.+-|....+...|++.|++.++-+ +-|-..|-.|..+|.-.+...-|+
T Consensus 345 eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~------p~DyRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN------PRDYRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC------chhHHHHhhhhHHHHHhcchHHHH
Confidence 9999999999876 3456789999999999999999999999999854 457789999999999999999999
Q ss_pred HHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhCCCC--CCchhhHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 631 DLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMMPPE--FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 631 ~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~--p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
-+|++..+ ++| |...|.+|.++|.+.++++||.+-++..-.- .+.. ++..|...+...++.++|...+++-++
T Consensus 419 yYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~-~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 419 YYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS-ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999874 455 6889999999999999999999999876322 2224 888999999999999999999998887
Q ss_pred -------CCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 708 -------LEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 708 -------l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
.+|+...+-.-|++-+.+.++|++|...-..
T Consensus 495 ~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 495 VSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3455555666788999999999999875553
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=4e-10 Score=113.81 Aligned_cols=292 Identities=13% Similarity=0.097 Sum_probs=194.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchh
Q 002772 461 GYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVV 540 (882)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 540 (882)
-|.++|+++.|++++.-..++.. ....-..+-.+.|.-...-.++..|.+.-+.++... .-+..
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdn---------------k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~ 491 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDN---------------KTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAA 491 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccc---------------hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHH
Confidence 57789999999999887765110 111111111222332333345666666655544221 01111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHH---HHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHH
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIM---AYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALF 617 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll 617 (882)
..+.-...-...|+++.|.+.+.+....|...-.+|.. .+-..|+.++|++.|-++..- +.-+...+..+.
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i------l~nn~evl~qia 565 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI------LLNNAEVLVQIA 565 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH------HHhhHHHHHHHH
Confidence 11111223335699999999999998777655544433 467789999999999888663 344566777888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHH-hCCCCCCchhhHHHHHHHHHhcCchh
Q 002772 618 AACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLIN-MMPPEFDKAGAWSSLLGACRIHQNVE 696 (882)
Q Consensus 618 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~-~m~~~p~~~~~~~~ll~a~~~~~~~~ 696 (882)
+-|....+..+|++++.+... -++.|+...+-|.++|-+.|+-..|.+..- .-..-|.+..+..-|...|....-.|
T Consensus 566 niye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHH
Confidence 889999999999999988764 455678999999999999999999988653 44444555545455555566666779
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHH
Q 002772 697 IGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLH 776 (882)
Q Consensus 697 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~ 776 (882)
.+...++++--+.|..+.-..+++..+.+.|++.+|.++++....+= ..+..|--.. .-+.||.--.+.+|.-
T Consensus 644 kai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf-pedldclkfl------vri~~dlgl~d~key~ 716 (840)
T KOG2003|consen 644 KAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF-PEDLDCLKFL------VRIAGDLGLKDAKEYA 716 (840)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-ccchHHHHHH------HHHhccccchhHHHHH
Confidence 99999999999999888777788889999999999999999876542 1111221100 0134565556666666
Q ss_pred HHHHHHH
Q 002772 777 GFLENLS 783 (882)
Q Consensus 777 ~~l~~l~ 783 (882)
.+|+.+.
T Consensus 717 ~klek~e 723 (840)
T KOG2003|consen 717 DKLEKAE 723 (840)
T ss_pred HHHHHHH
Confidence 6666553
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.7e-09 Score=111.74 Aligned_cols=232 Identities=16% Similarity=0.034 Sum_probs=172.8
Q ss_pred CCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHH
Q 002772 500 PKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVI 576 (882)
Q Consensus 500 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~l 576 (882)
.+++...+..-|..+...|+..+-..+-..+++. .+....+|-++.--|.-.|+..+|++.|.+.. ..-...|-..
T Consensus 274 dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~f 352 (611)
T KOG1173|consen 274 DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAF 352 (611)
T ss_pred CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHH
Confidence 3333333333344444444444433333333332 34466778888888888899999999999876 2335789999
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH
Q 002772 577 IMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDL 655 (882)
Q Consensus 577 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 655 (882)
...|+-.|..++|+..|...-+. ++-....+.-+.--|.+.+..+.|.++|.+.. ++-|+ +..++-+.-+
T Consensus 353 ghsfa~e~EhdQAmaaY~tAarl------~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 353 GHSFAGEGEHDQAMAAYFTAARL------MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVV 423 (611)
T ss_pred hHHhhhcchHHHHHHHHHHHHHh------ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhhe
Confidence 99999999999999999988774 22233444555566888999999999999886 66664 5666667666
Q ss_pred hhccCCHHHHHHHHHhCC--------CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcC
Q 002772 656 LGRAGKVEDAYQLINMMP--------PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ 727 (882)
Q Consensus 656 l~r~g~~~eA~~~~~~m~--------~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 727 (882)
.-..+.+.+|..+|+... ..+....+|+.|+-+|++.+..++|...+++++.+.|.++.+|..++-+|...|
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG 503 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Confidence 777888999988887542 122122268899999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHh
Q 002772 728 LWDKAMDVRKKMKE 741 (882)
Q Consensus 728 ~~~~a~~~~~~m~~ 741 (882)
+.+.|.+.+.+...
T Consensus 504 nld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 504 NLDKAIDHFHKALA 517 (611)
T ss_pred ChHHHHHHHHHHHh
Confidence 99999999986543
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=5.6e-08 Score=99.50 Aligned_cols=489 Identities=11% Similarity=0.060 Sum_probs=347.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhcc
Q 002772 219 IMNALMAMYAKLGRVDDAKTLFKSFED---RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSH 295 (882)
Q Consensus 219 ~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 295 (882)
.|-.-...=...+++..|+.+|+.... +++..|---+..=.++..+..|..++++....=...|..-| --+-.=-.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~ 153 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHH
Confidence 333333333446788899999998764 66777888888889999999999999988764222233222 22223345
Q ss_pred CCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccC--CCCceehHHHHHHHhcCCChHHHHHHH
Q 002772 296 LEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFIS--DKKIALWNAMITGYGQNEYDEEALMLF 373 (882)
Q Consensus 296 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~ 373 (882)
+|++..|+++|..-.+ ..|+...+++.|+.=.+...++.|+.++++.. .|++.+|--...-=-++|....|..+|
T Consensus 154 LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred hcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 7899999999999877 67999999999999999999999999999854 688888988888888899999999999
Q ss_pred HHHHHHcCCCCCcchHhhHHhHhh----cCCCCcchhhHHHHHHHhCCCC-chHHHHHHHHHHHhcCChH---HHHHH--
Q 002772 374 IKMEEVAGLWPNATTMSSVVPACV----RSEAFPDKEGIHGHAIKLGLGR-DRYVQNALMDMYSRMGRIE---ISKTI-- 443 (882)
Q Consensus 374 ~~m~~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~---~A~~~-- 443 (882)
......-| |...-..++.+++ +...++.|.-++..++..-... ....|..+...--+-|+.. ++.--
T Consensus 231 erAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 231 ERAIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 88733322 2333333344443 4567788888888888653222 2345555555545556543 33322
Q ss_pred ---HhhCCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcc-------hHhhH
Q 002772 444 ---FDDMEVR---DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSI-------TLMTV 510 (882)
Q Consensus 444 ---~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~-------t~~~l 510 (882)
++.+... |-.+|--.+..-...|+.+...++|++.+. +++|-.. .|.-+
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa------------------nvpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA------------------NVPPASEKRYWRRYIYLWI 369 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc------------------cCCchhHHHHHHHHHHHHH
Confidence 2233322 556777788888888999999999999997 7877432 22222
Q ss_pred HHhh---cCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH----hcCCHHHHHHHHhhCC--CCChhhHHHHHHHHH
Q 002772 511 LPGC---GALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYA----KCGCLNFARRVFDLMP--VRNVITWNVIIMAYG 581 (882)
Q Consensus 511 l~a~---~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~ 581 (882)
=.+| ....+++.++++++..++ -++...+++.-+=-+|+ ++-++..|.+++.... .|-..++...|..=.
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 2232 356789999999999988 45556677777666665 6789999999998876 677788888888888
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCC
Q 002772 582 MHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGK 661 (882)
Q Consensus 582 ~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~ 661 (882)
+.++++..-.+|++.++-+ +-|..+|......=...|+.+.|..+|+-+.....+..-...|.+.|+.=...|.
T Consensus 449 qL~efDRcRkLYEkfle~~------Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFS------PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHhhHHHHHHHHHHHHhcC------hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 9999999999999999965 3356788877777778899999999999998753333334567788888889999
Q ss_pred HHHHHHHHHhCCC-CCCchhhHHHHHHHHH-----hcC-----------chhHHHHHHHHHhcC----CCCCCch--HHH
Q 002772 662 VEDAYQLINMMPP-EFDKAGAWSSLLGACR-----IHQ-----------NVEIGEIAAQNLFLL----EPDVASH--YVL 718 (882)
Q Consensus 662 ~~eA~~~~~~m~~-~p~~~~~~~~ll~a~~-----~~~-----------~~~~a~~~~~~~~~l----~p~~~~~--~~~ 718 (882)
++.|..++++.-. .+-.. +|-++...-. ..+ ++..|..+|+++... +|..... .-.
T Consensus 523 ~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEa 601 (677)
T KOG1915|consen 523 FEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEA 601 (677)
T ss_pred HHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999998743 34445 9998876544 333 566788888887753 3432222 223
Q ss_pred HHHHHHHcCCchHHHHHHHHHH
Q 002772 719 LSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 719 l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
.-++-...|.-.+...|-.+|.
T Consensus 602 w~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 602 WKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HHHHHHhcCchhhHHHHHHhcc
Confidence 3445555676666666666653
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=2.2e-10 Score=116.30 Aligned_cols=199 Identities=11% Similarity=0.044 Sum_probs=168.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHH
Q 002772 538 DVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFI 614 (882)
Q Consensus 538 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~ 614 (882)
....+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|++..+.. +.+...+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~ 103 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN------PNNGDVLN 103 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHH
Confidence 45677788999999999999999999875 3456788889999999999999999999999864 33456777
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC
Q 002772 615 ALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 615 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~ 693 (882)
.+...+...|++++|.++|+..............+..+...+.+.|++++|.+.+++. ...|+....|..+...+...|
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 8888899999999999999999874222234567788899999999999999999875 445666658889999999999
Q ss_pred chhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 694 NVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+.+.|...+++++++.|+++..+..++.++...|++++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999999999998899999999999999999999988877553
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.28 E-value=2.8e-09 Score=116.50 Aligned_cols=125 Identities=11% Similarity=0.066 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHH
Q 002772 609 NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLG 687 (882)
Q Consensus 609 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~ 687 (882)
+......+..++...|+.++|.+.+++..+. .|+.... ++......|+.+++.+.+++. ...|+++..+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3444455555555555555555555555432 2332111 112222335666666655544 346677656667777
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 688 ACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 688 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
.|...++.+.|+..++++++.+|++ ..+..|+.++.+.|+.++|.+.+++-
T Consensus 337 l~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7888888888888888888888864 44667888888888888888777754
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.28 E-value=2.6e-09 Score=117.45 Aligned_cols=141 Identities=11% Similarity=-0.036 Sum_probs=83.9
Q ss_pred HHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHH---HHHHHHHhccCCHHHH
Q 002772 556 NFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTF---IALFAACSHSGMVSEG 629 (882)
Q Consensus 556 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~---~~ll~a~~~~g~~~~a 629 (882)
+...+.++..+ +.+...+..++..+...|+.++|++++++.++.. ||.... ..........++.+.+
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-------pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-------GDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-------CCcccchhHHHHHhhhcCCCChHHH
Confidence 34444444444 2366667777777777777777777777777743 444321 1111111122334444
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCch--hhHHHHHHHHHhcCchhHHHHHHH--HH
Q 002772 630 MDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKA--GAWSSLLGACRIHQNVEIGEIAAQ--NL 705 (882)
Q Consensus 630 ~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~--~~~~~ll~a~~~~~~~~~a~~~~~--~~ 705 (882)
.+.++...+ ..|+++ ....++.+.|...|+.+.|...++ .+
T Consensus 319 ~~~~e~~lk-----------------------------------~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 319 EKLIEKQAK-----------------------------------NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred HHHHHHHHH-----------------------------------hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 444433332 245554 466777777777777777777777 46
Q ss_pred hcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 706 FLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 706 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
++..|++.. +..|+.++.+.|+.++|.+++++-
T Consensus 364 ~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 364 CKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667775544 558888888888888888877764
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.26 E-value=9.1e-10 Score=121.04 Aligned_cols=252 Identities=15% Similarity=0.046 Sum_probs=184.8
Q ss_pred HhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcch-HhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhH
Q 002772 463 TICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSIT-LMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVV 541 (882)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 541 (882)
...|+++.|.+.+.+..+ ..|+... +.....+....|+.+.+.+.+..+.+....+...+
T Consensus 95 ~~~g~~~~A~~~l~~~~~-------------------~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~ 155 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD-------------------HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILV 155 (409)
T ss_pred HhCCCHHHHHHHHHHHhh-------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHH
Confidence 357999999999988754 4455443 33445567788999999999999887553333345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHH-HHH
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFI-ALF 617 (882)
Q Consensus 542 ~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~-~ll 617 (882)
.-.....+...|+++.|...++.+. +.+...+..+...|.+.|++++|.++++++.+.+ +. +...+. .-.
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-----~~-~~~~~~~l~~ 229 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-----LF-DDEEFADLEQ 229 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CC-CHHHHHHHHH
Confidence 5556888899999999999999987 3466778889999999999999999999999987 33 322221 111
Q ss_pred HH---HhccCCHHHHHHHHHHhHHhc--CCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHH--HH
Q 002772 618 AA---CSHSGMVSEGMDLFYKMKDDY--GIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLG--AC 689 (882)
Q Consensus 618 ~a---~~~~g~~~~a~~~~~~m~~~~--~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~--a~ 689 (882)
.+ ....+..+++.+.+..+.+.. ..+.+...+.+++..+...|+.++|.+.+++. ...|++......++. ..
T Consensus 230 ~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~ 309 (409)
T TIGR00540 230 KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR 309 (409)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh
Confidence 11 123333344444555555431 11237889999999999999999999999876 345666522111222 23
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCC--chHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 690 RIHQNVEIGEIAAQNLFLLEPDVA--SHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 690 ~~~~~~~~a~~~~~~~~~l~p~~~--~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
...++.+.+...+++.++..|+++ .....|++++.+.|+|++|.+.++..
T Consensus 310 l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 310 LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 334788999999999999999999 88999999999999999999999953
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.25 E-value=1.8e-09 Score=118.05 Aligned_cols=254 Identities=10% Similarity=0.017 Sum_probs=151.0
Q ss_pred hcCCCCcchhhHHHHHHHhCCCCchH--HHHHHHHHHHhcCChHHHHHHHhhCCCC---CeeeHHHHHHHHHhcCCHHHH
Q 002772 397 VRSEAFPDKEGIHGHAIKLGLGRDRY--VQNALMDMYSRMGRIEISKTIFDDMEVR---DTVSWNTMITGYTICGQHGDA 471 (882)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A 471 (882)
.+.|+++.+.+.+..+.+. .|+.. ........+...|+.+.|...++.+.+. +......+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4555555555555555442 23322 2223356777788888888888877632 455667778888888888888
Q ss_pred HHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 002772 472 LMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAK 551 (882)
Q Consensus 472 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k 551 (882)
++++.++.+ . ... +...+..+ ....|..++....+
T Consensus 207 ~~~l~~l~k---~--------------~~~-~~~~~~~l---------------------------~~~a~~~l~~~~~~ 241 (398)
T PRK10747 207 LDILPSMAK---A--------------HVG-DEEHRAML---------------------------EQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHHHHHH---c--------------CCC-CHHHHHHH---------------------------HHHHHHHHHHHHHH
Confidence 888888876 2 111 11111000 00112222222233
Q ss_pred cCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHH
Q 002772 552 CGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSE 628 (882)
Q Consensus 552 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~ 628 (882)
..+.+...++++.++ +.+......+..++...|+.++|.+++++..+. .||... .++.+....++.++
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-------~~~~~l--~~l~~~l~~~~~~~ 312 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-------QYDERL--VLLIPRLKTNNPEQ 312 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCCHHH--HHHHhhccCCChHH
Confidence 334555556666655 345566666777777777777777777777663 244421 12233334477777
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 629 GMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 629 a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
+.+..+...+. .+-|...+.++..++.+.|++++|.+.|+.. ...|+.. .+..|..++...|+.+.|...+++.++
T Consensus 313 al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 313 LEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777653 2334555667777777777777777777765 4456666 666777777777777777777777766
Q ss_pred CC
Q 002772 708 LE 709 (882)
Q Consensus 708 l~ 709 (882)
+.
T Consensus 390 ~~ 391 (398)
T PRK10747 390 LT 391 (398)
T ss_pred hh
Confidence 53
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.25 E-value=1.3e-11 Score=128.73 Aligned_cols=250 Identities=12% Similarity=0.098 Sum_probs=91.6
Q ss_pred HHHHHhcCChHHHHHHHhh-CC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCC
Q 002772 428 MDMYSRMGRIEISKTIFDD-ME----VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKP 502 (882)
Q Consensus 428 i~~y~~~g~~~~A~~~~~~-m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p 502 (882)
..++.+.|++++|.++++. +. ..|...|..+.......+++++|.+.++++.. . -+-
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~---~---------------~~~ 76 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA---S---------------DKA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---c---------------ccc
Confidence 4445555555555555532 11 11333444444444455556666666666554 1 111
Q ss_pred CcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhhHHHHH
Q 002772 503 NSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-----VRNVITWNVII 577 (882)
Q Consensus 503 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~~~~li 577 (882)
+...+..++.. ...+++++|.++.....+.. ++...+..++..|.+.|+++++..+++... +.+...|..+.
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a 153 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA 153 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 22233333333 45555566655554443322 344555666777777777777777777643 34566677777
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 002772 578 MAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLL 656 (882)
Q Consensus 578 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l 656 (882)
..+.+.|+.++|++.|++.++. .|+ ......++..+...|+.+++.++++...+. .+.+...+..+..++
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~-------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALEL-------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH--------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHh
Confidence 7777888888888888888774 365 455667777777778888777777777664 245556677777778
Q ss_pred hccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 657 GRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 657 ~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
...|+.++|+.++++. ...|+++.++..+..++...|+.+.|..+.+++++
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888888888877765 33566664666777778888888888877777654
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=3.9e-07 Score=97.00 Aligned_cols=375 Identities=11% Similarity=0.077 Sum_probs=216.0
Q ss_pred cHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhc
Q 002772 79 AFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRF 158 (882)
Q Consensus 79 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 158 (882)
.|..-+.-..++|++..-+..|+..+..-+-.....+|...+......+ -++.+.+++++..+-+...-+--|..+++.
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~-lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG-LPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC-ChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3444445556677777777777776655322145566777777777777 788888888887665656677888888899
Q ss_pred CCchHHHHHHHHHHHCC------CCCChhhHHHHHHHhccCCcccchHH---HHHHHHhhhhcC-CCchhHHHHHHHHHH
Q 002772 159 GKWDLALEAFRMMLYSN------VEPSSFTLVSVALACSNLSRRDGLRL---GRQVHGNSLRVG-EWNTFIMNALMAMYA 228 (882)
Q Consensus 159 g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~~~~---~~~~~~~~~~~g-~~~~~~~~~Li~~y~ 228 (882)
+++++|-+.+....... -+.+...|.-+-...++. .+.-. ...+...++..- +.-..+|++|.+-|.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~---p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN---PDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC---cchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 99999988887765332 122333455444444444 22222 222222222222 344578999999999
Q ss_pred hcCChhHHHHHHhcCCCC--CcccHHHHHHHHHc----------------CCC------hHHHHHHHHHHHHCCC-----
Q 002772 229 KLGRVDDAKTLFKSFEDR--DLVSWNTIVSSLSQ----------------NDK------FLEAVMFLRQMALRGI----- 279 (882)
Q Consensus 229 ~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~----------------~g~------~~~A~~l~~~m~~~g~----- 279 (882)
+.|.+++|+.+|++.... .+.-++.+-+.|++ .|+ ++-.+.-|+.+...+.
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 999999999999875431 22223333333322 111 1222333444333210
Q ss_pred ---C--C-ChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCC------chhHHHHHHHHhhcCCChHHHHHHHhccCC
Q 002772 280 ---K--P-DGVSIASVLPACSHLEMLDTGKEIHAYALRNDILID------NSFVGSALVDMYCNCREVECGRRVFDFISD 347 (882)
Q Consensus 280 ---~--p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 347 (882)
. | +..++..-.. ...|+..+-...+..+++.- .| -...+..+.+.|-..|+++.|+.+|++...
T Consensus 340 VlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v--dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV--DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc--CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 0 1 1111211111 12344555556677766652 22 224577888889999999999999988765
Q ss_pred CCce-------ehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCc
Q 002772 348 KKIA-------LWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRD 420 (882)
Q Consensus 348 ~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 420 (882)
-+-. +|-.....=.+..+++.|+++.++. . ..|.... +. +...+..- +..+..+
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A---~-~vP~~~~----~~-~yd~~~pv----------Q~rlhrS 476 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA---T-HVPTNPE----LE-YYDNSEPV----------QARLHRS 476 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh---h-cCCCchh----hh-hhcCCCcH----------HHHHHHh
Confidence 4322 4555555556677778888876655 2 2232211 11 11111110 1111234
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHH---HHHhcCCHHHHHHHHHHHhh
Q 002772 421 RYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMIT---GYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 421 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~ 480 (882)
..+|...++.--..|-++..+.+++.+.+--+.|=..+++ -+-.+..++++.+++++-+.
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 5567777777778889999999999887443333332222 23345668888888887655
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.1e-09 Score=108.47 Aligned_cols=280 Identities=14% Similarity=0.129 Sum_probs=202.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHH-HhhcCcchHHHHHHHHHHHHHhcCC--C
Q 002772 461 GYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVL-PGCGALSALAKGKEIHAYAIRNMLA--T 537 (882)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~g~~--~ 537 (882)
+|-...+.++++.-...... . |. |+..-+.+.+ .+.-+..++++|..+|+.+.+...- .
T Consensus 236 a~~el~q~~e~~~k~e~l~~---~--------------gf-~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~ 297 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSS---V--------------GF-PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD 297 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHh---c--------------cC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch
Confidence 44444455666665555554 2 33 3333333333 3345667888888888888876321 2
Q ss_pred chhHHHHHHHHHHhcCCHH-HHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHH
Q 002772 538 DVVVGSALVDMYAKCGCLN-FARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIA 615 (882)
Q Consensus 538 ~~~~~~~li~~y~k~g~~~-~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ 615 (882)
|..+|+.++-.--.+.++. -|..+++ +.+--..|..++.+-|...++.++|+..|++.++.+ |. ...|+.
T Consensus 298 dmdlySN~LYv~~~~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-------p~~~~aWTL 369 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-------PKYLSAWTL 369 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-------cchhHHHHH
Confidence 5566666553333222222 2333332 222334566667788888999999999999999955 66 556777
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC
Q 002772 616 LFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 616 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~ 693 (882)
+..-|....+...|.+-++.+.+ +.| |-..|-.|.++|.-.+...=|+-+|++. ..+|++..+|.+|+..|.+.+
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLN 446 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc
Confidence 78889999999999999999984 445 6778899999999999999999999987 578988889999999999999
Q ss_pred chhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchH
Q 002772 694 NVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSE 773 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~ 773 (882)
+.++|++.+++++.....+..+|+.|+++|.+.++.++|...+++-.+.-. ......|+..
T Consensus 447 ~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~-------------------~eg~~~~~t~ 507 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE-------------------LEGEIDDETI 507 (559)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------------------hhcccchHHH
Confidence 999999999999999988889999999999999999999999887654210 0011235566
Q ss_pred HHHHHHHHHHHHHHH
Q 002772 774 QLHGFLENLSERMRK 788 (882)
Q Consensus 774 ~i~~~l~~l~~~m~~ 788 (882)
++..+|.+-+.+|+.
T Consensus 508 ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 508 KARLFLAEYFKKMKD 522 (559)
T ss_pred HHHHHHHHHHHhhcc
Confidence 666777777777654
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=2.3e-11 Score=88.48 Aligned_cols=50 Identities=32% Similarity=0.581 Sum_probs=48.4
Q ss_pred CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhcc
Q 002772 246 RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSH 295 (882)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 295 (882)
||+++||++|.+|++.|++++|+++|++|++.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=5.3e-11 Score=86.59 Aligned_cols=50 Identities=32% Similarity=0.559 Sum_probs=48.6
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhc
Q 002772 568 RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSH 622 (882)
Q Consensus 568 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~ 622 (882)
||+++||++|.+|++.|++++|.++|++|.+.| ++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-----~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-----IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHcC
Confidence 799999999999999999999999999999999 99999999999999975
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.9e-07 Score=92.84 Aligned_cols=268 Identities=10% Similarity=-0.026 Sum_probs=189.5
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHH---HHHHHhcCCHHHHHHHHHHHhhhhhhhhcccccc
Q 002772 416 GLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTM---ITGYTICGQHGDALMLLREMQNMEEEKNRNNVYD 492 (882)
Q Consensus 416 g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 492 (882)
-++.++....++.+.|...|+.++|...|++...-|..+..+| ...+.+.|+++..-.+...+..
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~------------ 294 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA------------ 294 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh------------
Confidence 3566677777888888888888888888887764444443332 3345667788877777777765
Q ss_pred ccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCC
Q 002772 493 LDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRN 569 (882)
Q Consensus 493 ~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~ 569 (882)
-.+-....+..-+...-...+.+.|..+-...++.... +...+-.-...+...|+.++|.-.|.... +-+
T Consensus 295 ------~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 295 ------KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred ------hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence 11122222222222333456666776666666654321 23333333456677899999999998765 458
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHH-HHHh-ccCCHHHHHHHHHHhHHhcCCCCC-h
Q 002772 570 VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALF-AACS-HSGMVSEGMDLFYKMKDDYGIEPS-P 646 (882)
Q Consensus 570 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~ 646 (882)
..+|..|+..|...|++.||.-+-+..... ..-+..+.+.+. ..|. ....-++|.+++++.. .+.|+ .
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~ 438 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRL------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYT 438 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHH------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccH
Confidence 899999999999999999999988887764 334555655552 3332 2334578888888876 45676 5
Q ss_pred hHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 647 DHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 647 ~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
.....+..++.+.|+.+++..++++. ...||.. ..+.|....+..+..+.+...|..++.++|++
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 56677888999999999999999875 5678888 89999999999999999999999999999987
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=1.7e-07 Score=96.15 Aligned_cols=412 Identities=12% Similarity=0.079 Sum_probs=290.9
Q ss_pred cCCChHHHHHHHhccCC---CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcch-HhhHHhHhhcCCCCcchh
Q 002772 331 NCREVECGRRVFDFISD---KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATT-MSSVVPACVRSEAFPDKE 406 (882)
Q Consensus 331 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~ 406 (882)
..+++..|+.+|++..+ +++..|---+..=.++.....|..+++.. -.+-|...- +---+..=-..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRA---vt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRA---VTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHH---HHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 45667778888887665 35556777777777888888888888777 223343321 112222233468888999
Q ss_pred hHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Q 002772 407 GIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME--VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEE 484 (882)
Q Consensus 407 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 484 (882)
++|..-.+ ..|+...|++.|+.-.+-..++.|+.+++... .|++.+|--...-=.++|+...|..+|....+
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie---- 235 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE---- 235 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----
Confidence 99887765 57999999999999999999999999999865 78888888888878889999999999998876
Q ss_pred hhccccccccccccCCCCCcchHhhHHHhhc----CcchHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHhcCCHH---
Q 002772 485 KNRNNVYDLDETVLRPKPNSITLMTVLPGCG----ALSALAKGKEIHAYAIRNMLATD-VVVGSALVDMYAKCGCLN--- 556 (882)
Q Consensus 485 ~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~k~g~~~--- 556 (882)
-+ .|...-..++.+++ ....++.|.-++..+++.-.... ...|..+...=-+-|+..
T Consensus 236 --------------~~-~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 236 --------------FL-GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred --------------Hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 12 22222333444443 46778889999998887643321 445555555444556544
Q ss_pred HHHHHHhhCC--------CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh-------HHHHHHHHH-
Q 002772 557 FARRVFDLMP--------VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-------TFIALFAAC- 620 (882)
Q Consensus 557 ~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-------t~~~ll~a~- 620 (882)
++.--=.++. +-|-.+|--.+..--..|+.+...++|++.+.. ++|-.. .|.-+--+|
T Consensus 301 d~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan------vpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN------VPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc------CCchhHHHHHHHHHHHHHHHHHH
Confidence 4432222222 347788888888888889999999999999985 566321 122222222
Q ss_pred --hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH----hhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC
Q 002772 621 --SHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDL----LGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 621 --~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~----l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~ 693 (882)
....+++.+.++|+..++ -|+-...+++-+=-+ ..|+.++..|.+++-.. ..-|.+. ++...+..-.+.+
T Consensus 375 eEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~ 451 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLR 451 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHh
Confidence 346889999999999886 344445566554444 45889999999998754 4567777 8888888888899
Q ss_pred chhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchH
Q 002772 694 NVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSE 773 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~ 773 (882)
+++....++++.++..|.+..++.-.+.+-...|++|.|..+++....+...-.|..-|- ....|-.....+..+.
T Consensus 452 efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKAR 527 (677)
T ss_pred hHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHH
Confidence 999999999999999999999999999999999999999999998888876666666662 2223333344445555
Q ss_pred HHHHHH
Q 002772 774 QLHGFL 779 (882)
Q Consensus 774 ~i~~~l 779 (882)
.+|..|
T Consensus 528 ~LYerl 533 (677)
T KOG1915|consen 528 ALYERL 533 (677)
T ss_pred HHHHHH
Confidence 555433
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.14 E-value=5.2e-09 Score=119.60 Aligned_cols=245 Identities=16% Similarity=0.046 Sum_probs=182.9
Q ss_pred CHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcch-HhhHHHhh---------cCcchHHHHHHHHHHHHHhcCC
Q 002772 467 QHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSIT-LMTVLPGC---------GALSALAKGKEIHAYAIRNMLA 536 (882)
Q Consensus 467 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t-~~~ll~a~---------~~~~~~~~a~~i~~~~~~~g~~ 536 (882)
..++|+++|++..+ ..|+... +..+..++ ...+++++|...+..+++.. +
T Consensus 276 ~~~~A~~~~~~Al~-------------------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P 335 (553)
T PRK12370 276 SLQQALKLLTQCVN-------------------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-H 335 (553)
T ss_pred HHHHHHHHHHHHHh-------------------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-C
Confidence 46789999999875 5566543 32222222 13456889999999998875 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh-H
Q 002772 537 TDVVVGSALVDMYAKCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-T 612 (882)
Q Consensus 537 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-t 612 (882)
.+...+..+..++...|++++|...|++.. .| +...|..+...|...|++++|++.+++.++.+ |+.. .
T Consensus 336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-------P~~~~~ 408 (553)
T PRK12370 336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-------PTRAAA 408 (553)
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCChhh
Confidence 367788888999999999999999999876 44 46778889999999999999999999999954 6643 3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHH
Q 002772 613 FIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACR 690 (882)
Q Consensus 613 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~ 690 (882)
+..++..+...|++++|...++++.+. ..| +...+..+..+|...|+.++|...++++ +..|+....++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334444566689999999999998763 234 4556788889999999999999999886 445665546777777777
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 691 IHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 691 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
..| +.+...++++++..-..+.....+..+|+-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 4788888887775433333344488889999998888777 7776654
No 58
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.9e-06 Score=94.62 Aligned_cols=601 Identities=11% Similarity=0.086 Sum_probs=333.9
Q ss_pred HHHHHhcCCCchhHHHHHHH----------HHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCC--CCceeHHH
Q 002772 83 VLKAVAGIQDLSLGKQIHAH----------VVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITE--KDQVSWNS 150 (882)
Q Consensus 83 ll~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~~~~~~~ 150 (882)
.+..|.+.+-+..+.+.+.+ ..+.|.. ||. --+++...+ - +++++.+....+++ +...-.+.
T Consensus 474 AL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyT-Pdy---mflLq~l~r-~-sPD~~~qFa~~l~Q~~~~~~die~ 547 (1666)
T KOG0985|consen 474 ALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYT-PDY---MFLLQQLKR-S-SPDQALQFAMMLVQDEEPLADIEQ 547 (1666)
T ss_pred HHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCC-ccH---HHHHHHHHc-c-ChhHHHHHHHHhhccCCCcccHHH
Confidence 34555555555544444432 3455666 443 234444444 2 68888877777764 44556777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHH-HHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHh
Q 002772 151 MIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVS-VALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAK 229 (882)
Q Consensus 151 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~ 229 (882)
++..+........+..++-...+ +-.|+..-..+ +|. -.+..|-++-+.++..+....+-+-.+.+.+.+
T Consensus 548 I~DlFme~N~iQq~TSFLLdaLK-~~~Pd~g~LQTrLLE--------~NL~~aPqVADAILgN~mFtHyDra~IAqLCEK 618 (1666)
T KOG0985|consen 548 IVDLFMELNLIQQCTSFLLDALK-LNSPDEGHLQTRLLE--------MNLVHAPQVADAILGNDMFTHYDRAEIAQLCEK 618 (1666)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhc-CCChhhhhHHHHHHH--------HHhccchHHHHHHHhccccccccHHHHHHHHHh
Confidence 88888877777777777766654 33454433222 111 122223344444444442222336778888999
Q ss_pred cCChhHHHHHHhcCCC--CCcccHHH----HHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHH
Q 002772 230 LGRVDDAKTLFKSFED--RDLVSWNT----IVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGK 303 (882)
Q Consensus 230 ~g~~~~A~~~f~~m~~--~~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 303 (882)
.|-+..|++.|..+.. |.++.-+. -+-.|.-.-.++++++.++.|...+++.|..+...+..-|...-..+.-.
T Consensus 619 AGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li 698 (1666)
T KOG0985|consen 619 AGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALI 698 (1666)
T ss_pred cchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999887763 22221111 12334445578999999999999988888777666666555444444444
Q ss_pred HHHHHHHHhC----------CCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---------------C---------
Q 002772 304 EIHAYALRND----------ILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---------------K--------- 349 (882)
Q Consensus 304 ~~~~~~~~~g----------~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---------------~--------- 349 (882)
++|+...... .+..|..+.-..|.+-|+.|.+.+.+++.++-.-- |
T Consensus 699 ~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCD 778 (1666)
T KOG0985|consen 699 ELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD 778 (1666)
T ss_pred HHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEec
Confidence 4444433211 14667777788899999999999999887653210 1
Q ss_pred ce-ehHHHHHHHhcCCChHHHHHHHHHHHHHcC-----------CCCCcchH-------------hhHHhHhhcCCCCcc
Q 002772 350 IA-LWNAMITGYGQNEYDEEALMLFIKMEEVAG-----------LWPNATTM-------------SSVVPACVRSEAFPD 404 (882)
Q Consensus 350 ~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-----------~~p~~~t~-------------~~ll~~~~~~~~~~~ 404 (882)
.. .-+.|+- |.-.++..+-+++|-+- ...+ +.-+.... .-+..-+-+.+++..
T Consensus 779 Rf~fVhdlvl-YLyrnn~~kyIE~yVQk-vNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLkl 856 (1666)
T KOG0985|consen 779 RFDFVHDLVL-YLYRNNLQKYIEIYVQK-VNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKL 856 (1666)
T ss_pred ccccHHHHHH-HHHHhhHHHHHHHHHhh-cCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHH
Confidence 00 0111111 11122222222222211 0000 00011111 112222233334444
Q ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHH-------------------------------------------
Q 002772 405 KEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISK------------------------------------------- 441 (882)
Q Consensus 405 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~------------------------------------------- 441 (882)
-...++..+..| ..|..++|+|...|..+++-.+-.
T Consensus 857 Llp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNe 935 (1666)
T KOG0985|consen 857 LLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNE 935 (1666)
T ss_pred HHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCc
Confidence 444555555555 456677777776665443211110
Q ss_pred ---------------------HHHhh-----------CC------CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Q 002772 442 ---------------------TIFDD-----------ME------VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEE 483 (882)
Q Consensus 442 ---------------------~~~~~-----------m~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 483 (882)
+++.+ .. ..|+..-+.-+.++...+-+.+-+++++++.-...
T Consensus 936 NSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S 1015 (1666)
T KOG0985|consen 936 NSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS 1015 (1666)
T ss_pred hhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCc
Confidence 01000 00 01222223334445555555555666665543100
Q ss_pred hhhcc-ccccccccccCCCCCcchHhh------------HHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 002772 484 EKNRN-NVYDLDETVLRPKPNSITLMT------------VLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYA 550 (882)
Q Consensus 484 ~~~~~-~~~~~~~~~~~~~p~~~t~~~------------ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 550 (882)
..+.+ +... ......++.|..-... +...+...+.+++|..+|... ..+....+.||+
T Consensus 1016 ~Fse~~nLQn-LLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie--- 1086 (1666)
T KOG0985|consen 1016 VFSENRNLQN-LLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE--- 1086 (1666)
T ss_pred ccccchhhhh-hHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---
Confidence 00000 0000 0000001111111100 111122223334444443321 122222222222
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHH
Q 002772 551 KCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGM 630 (882)
Q Consensus 551 k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~ 630 (882)
.-+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|=+. -|...|..++..+++.|.+++-.
T Consensus 1087 ~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika-----------dDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA-----------DDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----------CCcHHHHHHHHHHHhcCcHHHHH
Confidence 235555565555555443 57999999999999999999887432 35678999999999999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 002772 631 DLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEP 710 (882)
Q Consensus 631 ~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 710 (882)
.++....++ .-+|.++ +.||-+|++.+++.|-++++. .|+.+ -....+.-|...|..+.|...+.
T Consensus 1154 ~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A-~i~~vGdrcf~~~~y~aAkl~y~------- 1218 (1666)
T KOG0985|consen 1154 KYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVA-NIQQVGDRCFEEKMYEAAKLLYS------- 1218 (1666)
T ss_pred HHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCch-hHHHHhHHHhhhhhhHHHHHHHH-------
Confidence 999988876 6667655 578999999999999988885 57777 77888999999999998888875
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 711 DVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 711 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
+.+.|..|+..+...|.+..|.+.-++.
T Consensus 1219 -~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1219 -NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred -HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4566778888888888888887655543
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.12 E-value=3.2e-07 Score=100.05 Aligned_cols=491 Identities=13% Similarity=0.050 Sum_probs=273.4
Q ss_pred cCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHH-------------------HHHHHhhh---hcC--
Q 002772 158 FGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLG-------------------RQVHGNSL---RVG-- 213 (882)
Q Consensus 158 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~-------------------~~~~~~~~---~~g-- 213 (882)
.++.+.++.-+..-...+...+..++..+..........++.+.. ....-.+. +.+
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~ 319 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKF 319 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555555555555666666555554444333444333 11111111 112
Q ss_pred CCchhHHHHHHHHHHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHH
Q 002772 214 EWNTFIMNALMAMYAKLGRVDDAKTLFKSFED---RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVL 290 (882)
Q Consensus 214 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 290 (882)
..|+.+|..|.-+..++|+++.+-+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+..+-..+.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 57888999999999999999999999987654 345679999999999999999999988766544345544433333
Q ss_pred -HHhc-cCCChhHHHHHHHHHHHhCCCC---CchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCC
Q 002772 291 -PACS-HLEMLDTGKEIHAYALRNDILI---DNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEY 365 (882)
Q Consensus 291 -~a~~-~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 365 (882)
+.|. +.+..++|..+-..++...... .....+-.+.-+|...- ....++.- +...
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~~~ 459 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RDAL 459 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HHHH
Confidence 3343 4566677766666665522001 11112222222221110 00000000 0011
Q ss_pred hHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHh
Q 002772 366 DEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFD 445 (882)
Q Consensus 366 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~ 445 (882)
-.++++.+++..+..+-.|+...|.++- ++-.++++.|.+...+..+.+-..+...|.-|.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 2456666666644444555554444443 33445666666666666666555566666666666666666666666555
Q ss_pred hCCCCCeeeHH---HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHH
Q 002772 446 DMEVRDTVSWN---TMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAK 522 (882)
Q Consensus 446 ~m~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~ 522 (882)
.....-...++ .-|..-..-++.++|+.....+.. -
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~---~-------------------------------------- 576 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA---L-------------------------------------- 576 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH---H--------------------------------------
Confidence 43311111111 111111123444555554444443 0
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCh-hhHHHHHHHHHccCChhHHHHHHHHH
Q 002772 523 GKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-----VRNV-ITWNVIIMAYGMHGEGQEVLELLKNM 596 (882)
Q Consensus 523 a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m 596 (882)
|+. ..| ....|+-....+.+..+. ..|. .++..+.. ... -+.+.+..-.. |
T Consensus 577 ----we~--~~~--------------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~se~~-L 633 (799)
T KOG4162|consen 577 ----WEA--EYG--------------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAGSELK-L 633 (799)
T ss_pred ----HHh--hhh--------------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcccccc-c
Confidence 000 000 000111112233333322 1111 12221111 111 01000000000 1
Q ss_pred HHcCCCCCcccCCh--------hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHH
Q 002772 597 VAEGSRGGEVKPNE--------VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQ 667 (882)
Q Consensus 597 ~~~g~~~~~~~pd~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~ 667 (882)
...- +.|+. ..|......+...+..++|...+.+... +.| ....|.-....+...|.++||.+
T Consensus 634 p~s~-----~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 634 PSST-----VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred Cccc-----ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 1111 22322 1234455667788888899888777764 334 45667777788889999999998
Q ss_pred HHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHH--HHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 668 LINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEI--AAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 668 ~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
.|... ..+|+.+.+..++...+...|+...++. +...+++++|.++.+|..|+.++-+.|+.++|.+.|...-+.
T Consensus 706 af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 706 AFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 77654 6789988899999999999999888888 999999999999999999999999999999999999876543
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.12 E-value=1.8e-06 Score=92.19 Aligned_cols=308 Identities=13% Similarity=0.117 Sum_probs=182.8
Q ss_pred ChhHHhHHHHHHHhcCCCHHHHHHHHhccCC-----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHH
Q 002772 112 SVTVANTLVNMYGKCGSDMWDVYKVFDRITE-----KDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSV 186 (882)
Q Consensus 112 ~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 186 (882)
-+.+|-.-+....+.| ++...+..|++... .....|...+.-....|-++-++.+|++-++- .|.. -.--
T Consensus 101 mpRIwl~Ylq~l~~Q~-~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eey 175 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQG-LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEY 175 (835)
T ss_pred CCHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHH
Confidence 3456777778888889 99999999987432 24567999999888999999999999998763 3332 3334
Q ss_pred HHHhccCCcccchHHHHHHHHhhhhc-------CCCchhHHHHHHHHHHhcCChh---HHHHHHhcCCCC--C--cccHH
Q 002772 187 ALACSNLSRRDGLRLGRQVHGNSLRV-------GEWNTFIMNALMAMYAKLGRVD---DAKTLFKSFEDR--D--LVSWN 252 (882)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~Li~~y~~~g~~~---~A~~~f~~m~~~--~--~~~~~ 252 (882)
+.-++.. +.+.++.+.++.++.. |..+...|.-+-+..++.-+.- ....+++.+..+ | ...|+
T Consensus 176 ie~L~~~---d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 176 IEYLAKS---DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred HHHHHhc---cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence 4444555 7778877777766533 3677778888777777654322 334455555542 3 34799
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHH-HhCCCCCchhHHHHHHHHhhc
Q 002772 253 TIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYAL-RNDILIDNSFVGSALVDMYCN 331 (882)
Q Consensus 253 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~~Li~~y~~ 331 (882)
+|..-|.+.|.+++|.++|++-... ..+..-|+.+..+|+.......+..+- ... +.+ -+.+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~-n~ed~------------ 316 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESG-NEEDD------------ 316 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhccc-Chhhh------------
Confidence 9999999999999999999887664 223445667777776543222222211 011 111 11111
Q ss_pred CCChHHHHHHHhccCCC---------------CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcc------hHh
Q 002772 332 CREVECGRRVFDFISDK---------------KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNAT------TMS 390 (882)
Q Consensus 332 ~g~~~~A~~~f~~m~~~---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~------t~~ 390 (882)
-+++-.+.-|+.+.++ ++..|..-+. +..|+..+-...|.+..+ .+.|-.. .+.
T Consensus 317 -~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~ 391 (835)
T KOG2047|consen 317 -VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWV 391 (835)
T ss_pred -hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH--ccCcccCCCChhhHHH
Confidence 1122233333333222 3334544443 335667777777777632 2333221 244
Q ss_pred hHHhHhhcCCCCcchhhHHHHHHHhCCCCc---hHHHHHHHHHHHhcCChHHHHHHHhhCC
Q 002772 391 SVVPACVRSEAFPDKEGIHGHAIKLGLGRD---RYVQNALMDMYSRMGRIEISKTIFDDME 448 (882)
Q Consensus 391 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 448 (882)
.+...|-..|+++.|..+|....+..++.- ..+|-.-..+=.+..+++.|+++.+...
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 445555566777777777776666544322 2344444455555556666666665543
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=8.4e-08 Score=100.86 Aligned_cols=257 Identities=12% Similarity=0.017 Sum_probs=143.5
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHH
Q 002772 353 WNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYS 432 (882)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 432 (882)
.-.-..-+...+++.+..+++.......++.++. +..=|..+...|+...-..+-..+++. .+....+|-++.--|.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~--~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLPC--LPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch--HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHH
Confidence 3344445556677788888877774444433333 333344555666655554444444443 3555667777777778
Q ss_pred hcCChHHHHHHHhhCCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhh
Q 002772 433 RMGRIEISKTIFDDMEVRD---TVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMT 509 (882)
Q Consensus 433 ~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ 509 (882)
-.|+..+|++.|.....-| ...|-.....|+-.|..+.|+..+...-+ -++-....+.-
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar------------------l~~G~hlP~LY 385 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR------------------LMPGCHLPSLY 385 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH------------------hccCCcchHHH
Confidence 8888888888888765332 34688888888888888888888877754 12222222222
Q ss_pred HHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC------C----ChhhHHHHHHH
Q 002772 510 VLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPV------R----NVITWNVIIMA 579 (882)
Q Consensus 510 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~------~----~~~~~~~li~~ 579 (882)
+---|...++++.|.+.+.++.... +.|+.+.+-+.-+....+.+.+|...|+.... + -..+|+.|..+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 3334555566666666665554432 33555555555555555556666655554330 0 12234444555
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 002772 580 YGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMK 637 (882)
Q Consensus 580 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 637 (882)
|.+.+++++|+..|++.+... +-|..|+.++.-.+...|.++.|.+.|.+..
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~------~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLS------PKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcC------CCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 555555555555555555432 2234444444444555555555555555443
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=9.4e-09 Score=111.54 Aligned_cols=237 Identities=19% Similarity=0.167 Sum_probs=177.5
Q ss_pred cchHhhHHHhhcCcchHHHHHHHHHHHHHh-----cC-CCchh-HHHHHHHHHHhcCCHHHHHHHHhhCC----------
Q 002772 504 SITLMTVLPGCGALSALAKGKEIHAYAIRN-----ML-ATDVV-VGSALVDMYAKCGCLNFARRVFDLMP---------- 566 (882)
Q Consensus 504 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~-~~~~~-~~~~li~~y~k~g~~~~A~~~~~~m~---------- 566 (882)
..|+..+...|...|+++.|...+...++. |. .|.+. ..+.+...|...+++++|..+|+++.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346667888999999999999999988764 21 22222 33457789999999999999998875
Q ss_pred CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC-CCcccCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 002772 567 VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSR-GGEVKPNEV-TFIALFAACSHSGMVSEGMDLFYKMKDDYG-- 641 (882)
Q Consensus 567 ~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 641 (882)
.| -..+++.|..+|.+.|++++|..++++..+--.. .+...|... -++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 2467888888999999999999888887652100 000223332 466677789999999999999998877654
Q ss_pred CCCC----hhHHHHHHHHhhccCCHHHHHHHHHhCC---------CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 002772 642 IEPS----PDHYACVVDLLGRAGKVEDAYQLINMMP---------PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLL 708 (882)
Q Consensus 642 ~~p~----~~~~~~li~~l~r~g~~~eA~~~~~~m~---------~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l 708 (882)
..++ ..+|+.|..+|-..|+++||.+++++.- ..+......+.|..+|...++.+.|...|+....+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 4679999999999999999999998761 12332336788899998889999898888876653
Q ss_pred ----CCC---CCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 709 ----EPD---VASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 709 ----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
.|+ ...+|..|+-+|...|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344 44567789999999999999999887753
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=6e-07 Score=95.02 Aligned_cols=431 Identities=12% Similarity=0.110 Sum_probs=242.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHH--HHHHhh--
Q 002772 255 VSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSA--LVDMYC-- 330 (882)
Q Consensus 255 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~--Li~~y~-- 330 (882)
++-+.++|++++|+.....+...+ +-|...+..=+-+..+.+.++.|..+.. +.+ -..+++. +=.+||
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~----~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNG----ALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcc----hhhhcchhhHHHHHHHH
Confidence 334455666666666666666543 2233345555555556666666653322 111 0111111 345555
Q ss_pred cCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-CCcchHhhHHhHhhcCCCCcchhhHH
Q 002772 331 NCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLW-PNATTMSSVVPACVRSEAFPDKEGIH 409 (882)
Q Consensus 331 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~ 409 (882)
+.+..++|...++.....+..+...-...+.+.|++++|+++|+.+ ...+.. -|...-..++.+-... .+
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L-~kn~~dd~d~~~r~nl~a~~a~l----~~---- 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHL-AKNNSDDQDEERRANLLAVAAAL----QV---- 161 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHhh----hH----
Confidence 5678888888887555555445555666778888899999998888 333322 1222222222221110 00
Q ss_pred HHHHHhCCCCchHHHHHH---HHHHHhcCChHHHHHHHhhC--------CCCCee----------eHHHHHHHHHhcCCH
Q 002772 410 GHAIKLGLGRDRYVQNAL---MDMYSRMGRIEISKTIFDDM--------EVRDTV----------SWNTMITGYTICGQH 468 (882)
Q Consensus 410 ~~~~~~g~~~~~~~~~~L---i~~y~~~g~~~~A~~~~~~m--------~~~~~~----------~~~~li~~~~~~g~~ 468 (882)
..+......| ..+|..+ .-.+...|++.+|+++++.. ...|.. .---|...+...|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0111122222 2233333 23456788999999888876 111111 112244567789999
Q ss_pred HHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHH---hhcCcchHHH--------------HHHHHHHHH
Q 002772 469 GDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLP---GCGALSALAK--------------GKEIHAYAI 531 (882)
Q Consensus 469 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~---a~~~~~~~~~--------------a~~i~~~~~ 531 (882)
++|..++...+. .-.+|........+ +...-.++-. +......+.
T Consensus 241 ~ea~~iy~~~i~------------------~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls 302 (652)
T KOG2376|consen 241 AEASSIYVDIIK------------------RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS 302 (652)
T ss_pred HHHHHHHHHHHH------------------hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999987 44555533222211 1111111111 001111111
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHc-cCChhHHHHHHHHHHHcCCCCCcccC
Q 002772 532 RNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VRNVITWNVIIMAYGM-HGEGQEVLELLKNMVAEGSRGGEVKP 608 (882)
Q Consensus 532 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~~~~~~p 608 (882)
....-....-+.|+.+|. +..+.+.++-...+ .|....-+-+..++.. ...+.+|.+++...-+.. |
T Consensus 303 -~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-------p 372 (652)
T KOG2376|consen 303 -KKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-------P 372 (652)
T ss_pred -HHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-------C
Confidence 111112334455666665 56677777777776 3333333333333322 235788888888876643 5
Q ss_pred Ch--hHHHHHHHHHhccCCHHHHHHHHH--------HhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHh-------
Q 002772 609 NE--VTFIALFAACSHSGMVSEGMDLFY--------KMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINM------- 671 (882)
Q Consensus 609 d~--~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~------- 671 (882)
.. +.....+.-....|+++.|.+++. ...+. +. .+.+...++.++.+.+.-+-|..++.+
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 54 344445556788999999999998 55432 33 345567788888888776555555443
Q ss_pred -CCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 002772 672 -MPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDV 735 (882)
Q Consensus 672 -m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 735 (882)
++..+.-...|.-+...-.++|+.+.|...++++++.+|.+....+.+.-.|+...- +.|..+
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~-eka~~l 513 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDP-EKAESL 513 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCH-HHHHHH
Confidence 233333332455555556678999999999999999999999999999999987653 555544
No 64
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.08 E-value=6.1e-06 Score=88.90 Aligned_cols=527 Identities=14% Similarity=0.145 Sum_probs=254.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCc-cHHHHH-------------HHHhcCCCchhHHHHHHHHH-------HhcCC
Q 002772 51 SEARSNQFREAILSYIEMTRSDIQPDNF-AFPAVL-------------KAVAGIQDLSLGKQIHAHVV-------KYGYG 109 (882)
Q Consensus 51 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll-------------~~~~~~~~~~~a~~~~~~~~-------~~~~~ 109 (882)
+....|++..|..+++.... .|+.. .|..+- ++++..|++..++.+|+-.. +.|-.
T Consensus 453 aaid~~df~ra~afles~~~---~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggd 529 (1636)
T KOG3616|consen 453 AAIDDGDFDRATAFLESLEM---GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGD 529 (1636)
T ss_pred cccccCchHHHHHHHHhhcc---CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCC
Confidence 34567888888887776432 34443 244443 33444455555555555331 11221
Q ss_pred CCChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002772 110 LSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALA 189 (882)
Q Consensus 110 ~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 189 (882)
..+-+-..+++.+..+ .+..|+.+|-+-. .-...|..|....+|++|+.+-+.. |.+.-...-.+-+++
T Consensus 530 gt~fykvra~lail~k---kfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~ 598 (1636)
T KOG3616|consen 530 GTDFYKVRAMLAILEK---KFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQA 598 (1636)
T ss_pred CchHHHHHHHHHHHHh---hhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHH
Confidence 1233333455555554 7788888774321 1123455566666677776655432 111101111112222
Q ss_pred hccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCC--CCCcccHHHHHHHHHcCCChHHH
Q 002772 190 CSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFE--DRDLVSWNTIVSSLSQNDKFLEA 267 (882)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A 267 (882)
+... +.-+.+-++ + .++-. .-+-|..|.+.|..-+|.+.-..-. ..|......+..++.+..-+++|
T Consensus 599 l~dt---~qd~ka~el-----k--~sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydka 667 (1636)
T KOG3616|consen 599 LMDT---GQDEKAAEL-----K--ESDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKA 667 (1636)
T ss_pred HHhc---Cchhhhhhh-----c--cccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhh
Confidence 2222 111111100 0 11111 2355778888888887776543221 23555555566666666677777
Q ss_pred HHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhH-HHHHHHHhhcCCChHHHHHHHhccC
Q 002772 268 VMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFV-GSALVDMYCNCREVECGRRVFDFIS 346 (882)
Q Consensus 268 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~~Li~~y~~~g~~~~A~~~f~~m~ 346 (882)
-++|+.+.. |--.+..+.+-.-+.+|.++-+.. +|..+.. -....+.+...|+++.|..-|-+..
T Consensus 668 gdlfeki~d---------~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 668 GDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred hhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 777776643 122233333322333343333322 2222111 1112222223333333333332210
Q ss_pred CCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHH
Q 002772 347 DKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNA 426 (882)
Q Consensus 347 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 426 (882)
..-..|.+......+.+|+.+++.+ .... .....|..
T Consensus 734 -----~~~kaieaai~akew~kai~ildni------------------------------------qdqk--~~s~yy~~ 770 (1636)
T KOG3616|consen 734 -----CLIKAIEAAIGAKEWKKAISILDNI------------------------------------QDQK--TASGYYGE 770 (1636)
T ss_pred -----hHHHHHHHHhhhhhhhhhHhHHHHh------------------------------------hhhc--cccccchH
Confidence 0111122233334444444444444 3221 11122344
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcch
Q 002772 427 LMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSIT 506 (882)
Q Consensus 427 Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t 506 (882)
+.+-|+..|+++.|.++|-+.. .++--|..|.++|+++.|.++-.+... |.
T Consensus 771 iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~---------------------~e--- 821 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG---------------------PE--- 821 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC---------------------ch---
Confidence 4555666666666666665432 244455666666666666665554422 11
Q ss_pred HhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCCh
Q 002772 507 LMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEG 586 (882)
Q Consensus 507 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 586 (882)
.....|-+-..-+-+.|++.+|++++-.+..|+.. |..|-++|..
T Consensus 822 ------------------------------~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ 866 (1636)
T KOG3616|consen 822 ------------------------------ATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLD 866 (1636)
T ss_pred ------------------------------hHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcc
Confidence 11222323333344567777777777666666643 5667777777
Q ss_pred hHHHHHHHHHHHcCCCCCcccCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHH
Q 002772 587 QEVLELLKNMVAEGSRGGEVKPN--EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVED 664 (882)
Q Consensus 587 ~~A~~l~~~m~~~g~~~~~~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~e 664 (882)
+..+.+.++ ..|| ..|...+..-+...|++.+|.+-|-+... |.+-+++|-..+.+++
T Consensus 867 ddmirlv~k----------~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 867 DDMIRLVEK----------HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWED 926 (1636)
T ss_pred hHHHHHHHH----------hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHH
Confidence 777666654 2344 34555566666677777777766655432 5556677777777777
Q ss_pred HHHHHHhCC---CCCCchhhHHHHH------HHHHhcCchhHHHHH------HHHHhc-----CCCCCCchHHHHHHHHH
Q 002772 665 AYQLINMMP---PEFDKAGAWSSLL------GACRIHQNVEIGEIA------AQNLFL-----LEPDVASHYVLLSNIYS 724 (882)
Q Consensus 665 A~~~~~~m~---~~p~~~~~~~~ll------~a~~~~~~~~~a~~~------~~~~~~-----l~p~~~~~~~~l~~~y~ 724 (882)
|..+-+.-. .+......|.--+ ..+-+||-++.|... |+-+++ ....-+..++-++..+.
T Consensus 927 ayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~le 1006 (1636)
T KOG3616|consen 927 AYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLE 1006 (1636)
T ss_pred HHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhh
Confidence 777665421 0111111232111 122344444443332 222222 22344667888888999
Q ss_pred HcCCchHHHHHHHHHHhCC
Q 002772 725 SAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 725 ~~g~~~~a~~~~~~m~~~g 743 (882)
..|++++|.+-+-+..+.+
T Consensus 1007 degk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 1007 DEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hccchhhhhHhhHHHhhcc
Confidence 9999999987776655543
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=3.9e-09 Score=102.71 Aligned_cols=228 Identities=12% Similarity=0.077 Sum_probs=164.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCC
Q 002772 425 NALMDMYSRMGRIEISKTIFDDME--VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKP 502 (882)
Q Consensus 425 ~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p 502 (882)
+-+..+|.+.|.+.+|.+.|+... .+-+.||-.|-..|.+.++++.|+.+|.+-++ ..|
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld-------------------~fP 287 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD-------------------SFP 287 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh-------------------cCC
Confidence 446667777777777777777654 34555666677777777777777777777664 234
Q ss_pred CcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHH
Q 002772 503 NSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMA 579 (882)
Q Consensus 503 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~ 579 (882)
-.+|| ..-....+...++.++|.++++... .-|+.+..++..+
T Consensus 288 ~~VT~----------------------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 288 FDVTY----------------------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG 333 (478)
T ss_pred chhhh----------------------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence 44443 2223344555566777777777655 3355555566667
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhcc
Q 002772 580 YGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRA 659 (882)
Q Consensus 580 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~ 659 (882)
|--.|+++.|+.+|+++++.| .-+...|+.+.-+|...+++|-++.-|++....
T Consensus 334 yfY~~~PE~AlryYRRiLqmG------~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-------------------- 387 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMG------AQSPELFCNIGLCCLYAQQIDLVLPSFQRALST-------------------- 387 (478)
T ss_pred cccCCChHHHHHHHHHHHHhc------CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh--------------------
Confidence 777788888888888888887 345666777777777777777777777666542
Q ss_pred CCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 660 GKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 660 g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
|..+....++|..|.......||+..|.+.++.++.-+|++...++.|+-+-.+.|+.++|..+++..
T Consensus 388 ------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 388 ------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred ------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 11112223389999988899999999999999999999999999999999999999999999999987
Q ss_pred HhCC
Q 002772 740 KEMG 743 (882)
Q Consensus 740 ~~~g 743 (882)
+...
T Consensus 456 ~s~~ 459 (478)
T KOG1129|consen 456 KSVM 459 (478)
T ss_pred hhhC
Confidence 6643
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=2.4e-08 Score=104.38 Aligned_cols=213 Identities=14% Similarity=0.067 Sum_probs=155.5
Q ss_pred chHHHHHHHHHHHHHhc-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHH
Q 002772 518 SALAKGKEIHAYAIRNM-LAT--DVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLE 591 (882)
Q Consensus 518 ~~~~~a~~i~~~~~~~g-~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~ 591 (882)
+..+.+..-+..++... ..| ....|..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666666432 222 24567788889999999999999999876 4467899999999999999999999
Q ss_pred HHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHH
Q 002772 592 LLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLIN 670 (882)
Q Consensus 592 l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~ 670 (882)
.|++.++ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.++
T Consensus 120 ~~~~Al~-------l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 120 AFDSVLE-------LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred HHHHHHH-------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999998 4576 567888888899999999999999999864 5554322333334556788999999996
Q ss_pred hCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHh-------cCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 671 MMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLF-------LLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 671 ~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~-------~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
+....-+.. .|.. .......|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+.+
T Consensus 190 ~~~~~~~~~-~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 190 QRYEKLDKE-QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHhhCCcc-ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 542111112 4442 2233335555443 2344333 5567778899999999999999999999999887654
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2e-07 Score=96.12 Aligned_cols=338 Identities=11% Similarity=-0.045 Sum_probs=162.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhH-HHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHH
Q 002772 150 SMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTL-VSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYA 228 (882)
Q Consensus 150 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~ 228 (882)
..-.-|.++|++++|++.|....+ ..||..+| ...-.++... ++++...+--...+...+.-+..+..-..++-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~l---gd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESL---GDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHH---hhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 444556778889999999988876 46774444 4444445556 77777777766666665556666777777788
Q ss_pred hcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHH---------HHHC--CCCCChhhHhhHHHHhccCC
Q 002772 229 KLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQ---------MALR--GIKPDGVSIASVLPACSHLE 297 (882)
Q Consensus 229 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~---------m~~~--g~~pd~~t~~~ll~a~~~~~ 297 (882)
..|++++|+.= +|-.++..++..+.-.--+.+++.. |.+. .+.|......+.+..+...-
T Consensus 195 ~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 88888877642 2333344444333322222333322 1211 23455444444433332100
Q ss_pred ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcC-CChHHHHHHHhcc-------CCCC---c------eehHHHHHHH
Q 002772 298 MLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNC-REVECGRRVFDFI-------SDKK---I------ALWNAMITGY 360 (882)
Q Consensus 298 ~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~m-------~~~~---~------~~~~~li~~~ 360 (882)
.. ..+.+ + -..|...-..+=..|.+. ..+..|...+.+- ...+ . .+.+.--.-+
T Consensus 266 ~~-------~~~~~-~-~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 266 KP-------LFDNK-S-DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred cc-------cccCC-C-ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 00 00000 0 001111111111111110 1122222222111 1111 0 0111111122
Q ss_pred hcCCChHHHHHHHHHHHHHcCCCCCcch-HhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHH
Q 002772 361 GQNEYDEEALMLFIKMEEVAGLWPNATT-MSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEI 439 (882)
Q Consensus 361 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 439 (882)
.-.|+..+|...|+.. . ...|.... |.-+...+....+.++..+.|..+.+.. +-++.+|---..++.-.+++++
T Consensus 337 fL~g~~~~a~~d~~~~-I--~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAA-I--KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhcCCchhhhhhHHHH-H--hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 3346666666666666 2 12222222 4455555666666666666666666554 3344555555555566666666
Q ss_pred HHHHHhhCCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcC
Q 002772 440 SKTIFDDMEVR---DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGA 516 (882)
Q Consensus 440 A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~ 516 (882)
|..=|+....- ++..|--+-.+.-+.+++++++..|++..+ ..+.-...|+..-..+..
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk------------------kFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK------------------KFPNCPEVYNLFAEILTD 474 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hCCCCchHHHHHHHHHhh
Confidence 66666665522 233333343444455566666666666665 344444445555555555
Q ss_pred cchHHHHHHHHHHHHH
Q 002772 517 LSALAKGKEIHAYAIR 532 (882)
Q Consensus 517 ~~~~~~a~~i~~~~~~ 532 (882)
.++++.|.+.++..++
T Consensus 475 qqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHhHHHHHHHHHHHHh
Confidence 5555555555555543
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=2e-07 Score=91.30 Aligned_cols=310 Identities=14% Similarity=0.141 Sum_probs=172.1
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCc-chHhhHHhHhhcCCCCcchhhHHHHHHHhC-CCCc--hHHHHHHHHHHHhcCCh
Q 002772 362 QNEYDEEALMLFIKMEEVAGLWPNA-TTMSSVVPACVRSEAFPDKEGIHGHAIKLG-LGRD--RYVQNALMDMYSRMGRI 437 (882)
Q Consensus 362 ~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~Li~~y~~~g~~ 437 (882)
-+.+.++|.++|-+|.+ ..|.. .+-.++-+.+-+.|..+.|+.+|..+.++. +..+ ....-.|..=|.+.|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 36778888888888822 22222 223344455555666666666666655432 1111 12223344445555555
Q ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCc
Q 002772 438 EISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGAL 517 (882)
Q Consensus 438 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~ 517 (882)
|.|+.+|..+.+.+...-++ .--++..|-..
T Consensus 124 DRAE~~f~~L~de~efa~~A-------------------------------------------------lqqLl~IYQ~t 154 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGA-------------------------------------------------LQQLLNIYQAT 154 (389)
T ss_pred hHHHHHHHHHhcchhhhHHH-------------------------------------------------HHHHHHHHHHh
Confidence 55555555444433333333 33334444444
Q ss_pred chHHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHccCChhHHH
Q 002772 518 SALAKGKEIHAYAIRNMLATD----VVVGSALVDMYAKCGCLNFARRVFDLMPV---RNVITWNVIIMAYGMHGEGQEVL 590 (882)
Q Consensus 518 ~~~~~a~~i~~~~~~~g~~~~----~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 590 (882)
.++++|.++-..+.+.+-.+. ...|.-|...+.-..+.+.|..++.+..+ ..+..--.+...+...|+++.|+
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV 234 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAV 234 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHH
Confidence 444444444444444332221 12344455555566777778888777652 23333334556677888888888
Q ss_pred HHHHHHHHcCCCCCcccCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHH
Q 002772 591 ELLKNMVAEGSRGGEVKPN--EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQL 668 (882)
Q Consensus 591 ~l~~~m~~~g~~~~~~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~ 668 (882)
+.++...+.+ |+ ..+...|..+|.+.|+.+++..++..+.+. .+....-..|.+......-.++|...
T Consensus 235 ~~~e~v~eQn-------~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 235 EALERVLEQN-------PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred HHHHHHHHhC-------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHH
Confidence 8888888865 55 345667777888888888888888887754 34444444444444433334444443
Q ss_pred H-HhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 002772 669 I-NMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKE 747 (882)
Q Consensus 669 ~-~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~ 747 (882)
+ +...-+|+.. ....|+..- -. =++.|+|.+.+.+++.|....++..
T Consensus 305 l~~Ql~r~Pt~~-gf~rl~~~~--------------------l~-----------daeeg~~k~sL~~lr~mvge~l~~~ 352 (389)
T COG2956 305 LTRQLRRKPTMR-GFHRLMDYH--------------------LA-----------DAEEGRAKESLDLLRDMVGEQLRRK 352 (389)
T ss_pred HHHHHhhCCcHH-HHHHHHHhh--------------------hc-----------cccccchhhhHHHHHHHHHHHHhhc
Confidence 3 3344455544 333332221 11 1234678888888999988888888
Q ss_pred CceeEEEeCCEEEEEEeC
Q 002772 748 PGCSWIEFGDEIHKFLAG 765 (882)
Q Consensus 748 ~~~s~i~~~~~~~~f~~~ 765 (882)
|.+.--.-+-+.|.|..-
T Consensus 353 ~~YRC~~CGF~a~~l~W~ 370 (389)
T COG2956 353 PRYRCQNCGFTAHTLYWH 370 (389)
T ss_pred CCceecccCCcceeeeee
Confidence 876655555556666543
No 69
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.1e-07 Score=93.11 Aligned_cols=285 Identities=11% Similarity=0.107 Sum_probs=176.7
Q ss_pred CCChHHHHHHHhccCCCCceeh---HHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcc--hHhhHHhHhhcCCCCcchh
Q 002772 332 CREVECGRRVFDFISDKKIALW---NAMITGYGQNEYDEEALMLFIKMEEVAGLWPNAT--TMSSVVPACVRSEAFPDKE 406 (882)
Q Consensus 332 ~g~~~~A~~~f~~m~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 406 (882)
..+.++|.++|-+|.+.|..++ -+|-+.|-+.|..+.|+.+-+.+....+..-+.. ..-.+..-|-..|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4789999999999998776654 4577889999999999999988833222222211 2233445566788999999
Q ss_pred hHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Q 002772 407 GIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKN 486 (882)
Q Consensus 407 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (882)
++|..+++.| ..-.....-|+..|-+..+|++|.++-++...-+...++.-|.-|
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf------------------------ 182 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF------------------------ 182 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH------------------------
Confidence 9999988755 223334455666666666666666655554443334444433211
Q ss_pred ccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 002772 487 RNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP 566 (882)
Q Consensus 487 ~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~ 566 (882)
|.-+-.......+++.|...+..+.+... ..+...-.+.+.+...|+++.|.+.++.+.
T Consensus 183 --------------------yCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 183 --------------------YCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred --------------------HHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 11111122223445555555555554432 234444556778888888888888888887
Q ss_pred CCCh----hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 002772 567 VRNV----ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGI 642 (882)
Q Consensus 567 ~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 642 (882)
+.|. .+...|..+|.+.|+.++.+..+.++.+.. ++...-..+-..-....-.+.|..++.+-..+
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-------~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--- 311 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-------TGADAELMLADLIELQEGIDAAQAYLTRQLRR--- 311 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-------CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---
Confidence 4443 345667788888899888888888888854 44333333333333334455666655555443
Q ss_pred CCChhHHHHHHHHhhc---cCCHHHHHHHHHhC
Q 002772 643 EPSPDHYACVVDLLGR---AGKVEDAYQLINMM 672 (882)
Q Consensus 643 ~p~~~~~~~li~~l~r---~g~~~eA~~~~~~m 672 (882)
+|+...+..+++.-.. -|+..+-+.+++.|
T Consensus 312 ~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 312 KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 6888888888887542 34455555555555
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=98.98 E-value=4e-08 Score=112.34 Aligned_cols=212 Identities=12% Similarity=0.013 Sum_probs=165.3
Q ss_pred chHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh---------cCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCC
Q 002772 518 SALAKGKEIHAYAIRNMLATDVVVGSALVDMYAK---------CGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGE 585 (882)
Q Consensus 518 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k---------~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~ 585 (882)
+++++|.+.+..+++.... +...+..+..+|.. .+++++|...+++.. +.+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4568899999988875422 34456666655542 345889999999876 4467888888889999999
Q ss_pred hhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHhhccCCHH
Q 002772 586 GQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSP-DHYACVVDLLGRAGKVE 663 (882)
Q Consensus 586 ~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~l~r~g~~~ 663 (882)
+++|+..|++.++.+ |+ ...+..+..++...|++++|...++++.+. .|+. ..+..+...+...|+++
T Consensus 354 ~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 354 YIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGID 423 (553)
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHH
Confidence 999999999999954 66 456777888899999999999999999854 5553 23334455566789999
Q ss_pred HHHHHHHhCC--CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 664 DAYQLINMMP--PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 664 eA~~~~~~m~--~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
+|.+.+++.. ..|+.+..+..+..++...|+.++|+..++++....|++......|+..|...| ++|...++.+.+
T Consensus 424 eA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 424 DAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9999998763 246666467778888889999999999999999999998888889999998888 588877777655
Q ss_pred C
Q 002772 742 M 742 (882)
Q Consensus 742 ~ 742 (882)
.
T Consensus 502 ~ 502 (553)
T PRK12370 502 S 502 (553)
T ss_pred H
Confidence 4
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.96 E-value=3.7e-08 Score=99.85 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=141.5
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH
Q 002772 570 VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDH 648 (882)
Q Consensus 570 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 648 (882)
...+..+...|...|++++|++.|++.++.. |+ ...+..+...+...|++++|.+.+++..+. .+.+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~ 101 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDV 101 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHH
Confidence 4667788899999999999999999998854 54 567788888899999999999999999864 2345677
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhCCC---CCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 002772 649 YACVVDLLGRAGKVEDAYQLINMMPP---EFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSS 725 (882)
Q Consensus 649 ~~~li~~l~r~g~~~eA~~~~~~m~~---~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 725 (882)
+..+...+...|++++|.+.+++... .+.....|..+...+...|+.+.|...++++++..|+++..+..++.+|..
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 88889999999999999999988632 233344788888899999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhC
Q 002772 726 AQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 726 ~g~~~~a~~~~~~m~~~ 742 (882)
.|++++|...+++..+.
T Consensus 182 ~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT 198 (234)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988765
No 72
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.96 E-value=6.1e-07 Score=90.87 Aligned_cols=287 Identities=15% Similarity=0.077 Sum_probs=175.3
Q ss_pred CCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHH
Q 002772 261 NDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRR 340 (882)
Q Consensus 261 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~ 340 (882)
.|++.+|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-..+..+.+.. -.++..+.-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence 456666666665554444333 2234444455555666666666666665543 24455555555666666666666655
Q ss_pred HHhcc---CCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCC
Q 002772 341 VFDFI---SDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGL 417 (882)
Q Consensus 341 ~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 417 (882)
-.+.. ..++.........+|.+.|++.+...++.+| .+.++--|+..-
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L-~ka~~l~~~e~~---------------------------- 225 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL-RKAGLLSDEEAA---------------------------- 225 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH-HHccCCChHHHH----------------------------
Confidence 54433 3345556667777777777777777777777 555544333210
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhcccccccc
Q 002772 418 GRDRYVQNALMDMYSRMGRIEISKTIFDDME---VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLD 494 (882)
Q Consensus 418 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 494 (882)
.....+|+.+++-....+..+.-...++..+ ..++..-.+++.-+.+.|+.++|.++..+..+ .
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk---~---------- 292 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK---R---------- 292 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH---h----------
Confidence 0011233444444444444444444555555 22455556677777778888888888777776 3
Q ss_pred ccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhh
Q 002772 495 ETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VRNVIT 572 (882)
Q Consensus 495 ~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~ 572 (882)
+..|+ ...+-.+.+.++.+.-.+..+...+.. +.++..+.+|...|.|.+.+.+|...|+... .|+..+
T Consensus 293 ----~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~ 363 (400)
T COG3071 293 ----QWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD 363 (400)
T ss_pred ----ccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh
Confidence 44454 223334555566655555555444432 2344778888888999999999999888655 788888
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcC
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEG 600 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g 600 (882)
|+-+..+|.+.|+..+|.+.+++.+..-
T Consensus 364 ~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 364 YAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 8888899999999998888888877544
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.94 E-value=1.3e-07 Score=98.89 Aligned_cols=232 Identities=9% Similarity=-0.056 Sum_probs=163.2
Q ss_pred cCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCc--chHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHH
Q 002772 465 CGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNS--ITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVG 542 (882)
Q Consensus 465 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 542 (882)
.++.+.++.-+.+++... ...|+. ..+......+...|+.+.|...+..+++.. +.+...|
T Consensus 39 ~~~~e~~i~~~~~~l~~~----------------~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~ 101 (296)
T PRK11189 39 TLQQEVILARLNQILASR----------------DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAY 101 (296)
T ss_pred chHHHHHHHHHHHHHccc----------------cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 356778888888887510 122322 345566667888999999999999998865 3467899
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHH
Q 002772 543 SALVDMYAKCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAA 619 (882)
Q Consensus 543 ~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a 619 (882)
+.+...|...|++++|...|++.. .| +..+|..+...+...|++++|++.|++..+.. |+..........
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-------P~~~~~~~~~~l 174 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-------PNDPYRALWLYL 174 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHH
Confidence 999999999999999999999886 34 56788889999999999999999999999854 665422222223
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHh-CC----CCCCchhhHHHHHHHHHhcCc
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINM-MP----PEFDKAGAWSSLLGACRIHQN 694 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~-m~----~~p~~~~~~~~ll~a~~~~~~ 694 (882)
+...++.++|...|.+... ...|+...+ .++..+......+++.+.+.+ .. ..|+...+|..|+..+...|+
T Consensus 175 ~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~ 251 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD 251 (296)
T ss_pred HHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4556789999999977654 334433222 333333322222334433332 11 123444589999999999999
Q ss_pred hhHHHHHHHHHhcCCC-CCCchHHHHHHHH
Q 002772 695 VEIGEIAAQNLFLLEP-DVASHYVLLSNIY 723 (882)
Q Consensus 695 ~~~a~~~~~~~~~l~p-~~~~~~~~l~~~y 723 (882)
.+.|...++++++++| +...+-..+..+.
T Consensus 252 ~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 252 LDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 9999999999999997 5444444454443
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=9e-07 Score=87.48 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=106.4
Q ss_pred CHHHHHHHHhhCC----CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHH
Q 002772 554 CLNFARRVFDLMP----VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSE 628 (882)
Q Consensus 554 ~~~~A~~~~~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~ 628 (882)
.+.-|.+.|+-.- .- .+.--.+|.+.+--..++++++-.++....-- .-|.+--..+..|.+..|.+.+
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF------~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF------TNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcchhhhHHHHHHHHhcChHH
Confidence 3556666666543 22 23334566677777778888888888877653 3333333457788888999999
Q ss_pred HHHHHHHhHHhcCCCCChhHH-HHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 629 GMDLFYKMKDDYGIEPSPDHY-ACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 629 a~~~~~~m~~~~~~~p~~~~~-~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
|.++|-.+... .++ +..+| +.|..+|.+.|+.+-|++++-++....+....+.-+.+-|.+.+.+=-|-++|+.+-.
T Consensus 412 aEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 412 AEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 99999877642 333 34444 5567889999999999999998865444442444555779999999999999999888
Q ss_pred CCCC
Q 002772 708 LEPD 711 (882)
Q Consensus 708 l~p~ 711 (882)
++|.
T Consensus 490 lDP~ 493 (557)
T KOG3785|consen 490 LDPT 493 (557)
T ss_pred cCCC
Confidence 8884
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=8.7e-08 Score=89.69 Aligned_cols=162 Identities=13% Similarity=0.111 Sum_probs=135.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHH
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYA 650 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 650 (882)
...|..+|.+.|+...|.+-+++.++.. |+ ..++..+...|.+.|..+.|.+.|++..+ +.| +-++.|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLN 107 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-------PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhh
Confidence 4456678888888888888888888854 65 55788888888888888888888888874 345 467788
Q ss_pred HHHHHhhccCCHHHHHHHHHhCCCC---CCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcC
Q 002772 651 CVVDLLGRAGKVEDAYQLINMMPPE---FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ 727 (882)
Q Consensus 651 ~li~~l~r~g~~~eA~~~~~~m~~~---p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 727 (882)
...--||..|++++|...|++.... |....+|.++...-.+.|+.+.|+..++++++++|+.+.....+.+...+.|
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAG 187 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcc
Confidence 8888888889999999888876333 3334478888888889999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCCC
Q 002772 728 LWDKAMDVRKKMKEMGV 744 (882)
Q Consensus 728 ~~~~a~~~~~~m~~~g~ 744 (882)
++-+|.-.++....++.
T Consensus 188 ~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 188 DYAPARLYLERYQQRGG 204 (250)
T ss_pred cchHHHHHHHHHHhccc
Confidence 99999999998887764
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.90 E-value=3.5e-06 Score=90.69 Aligned_cols=490 Identities=15% Similarity=0.134 Sum_probs=275.7
Q ss_pred cCCCHHHHHHHHhccC-CCCce-eHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHH
Q 002772 126 CGSDMWDVYKVFDRIT-EKDQV-SWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGR 203 (882)
Q Consensus 126 ~g~~~~~A~~~f~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 203 (882)
-| +++.|...++... .||.. .|-.+...-...|+.--|.+.|..+ +++..++
T Consensus 457 ~~-df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai-------------------------~dvak~r 510 (1636)
T KOG3616|consen 457 DG-DFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI-------------------------GDVAKAR 510 (1636)
T ss_pred cC-chHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH-------------------------HHHHHHH
Confidence 35 7777877776654 24443 5777766667777777777776654 4444455
Q ss_pred HHHHhhh-------hcC--CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHH
Q 002772 204 QVHGNSL-------RVG--EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQM 274 (882)
Q Consensus 204 ~~~~~~~-------~~g--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 274 (882)
.+|+... ..| ..+-+-..+++.+..+ ++..|..+|-+-.. -...|..|....++++|+.+-+.
T Consensus 511 ~lhd~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn~-----te~aigmy~~lhkwde~i~lae~- 582 (1636)
T KOG3616|consen 511 FLHDILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQNA-----TEEAIGMYQELHKWDEAIALAEA- 582 (1636)
T ss_pred HHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhccc-----HHHHHHHHHHHHhHHHHHHHHHh-
Confidence 5554332 223 3343444455555443 57777777743221 12345555556667777766432
Q ss_pred HHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhcc--CCCCcee
Q 002772 275 ALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFI--SDKKIAL 352 (882)
Q Consensus 275 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~ 352 (882)
.|.+.=...-.+-++++...|+-+.|-++- ..| .-.-+-|..|.|.|.+.+|.+.-..- ...|...
T Consensus 583 --~~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sd-gd~laaiqlyika~~p~~a~~~a~n~~~l~~de~i 650 (1636)
T KOG3616|consen 583 --KGHPALEKLKRSYLQALMDTGQDEKAAELK---------ESD-GDGLAAIQLYIKAGKPAKAARAALNDEELLADEEI 650 (1636)
T ss_pred --cCChHHHHHHHHHHHHHHhcCchhhhhhhc---------ccc-CccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHH
Confidence 222211222344556666666665554431 111 12245678899999988887654321 1234445
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHH-HHHHHHHH
Q 002772 353 WNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYV-QNALMDMY 431 (882)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y 431 (882)
...+..++.+..-+++|-++|+++ . .+...+..+-+...+-.|.++-... ++..++. -..-.+-+
T Consensus 651 l~~ia~alik~elydkagdlfeki-~---------d~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl 716 (1636)
T KOG3616|consen 651 LEHIAAALIKGELYDKAGDLFEKI-H---------DFDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHL 716 (1636)
T ss_pred HHHHHHHHHhhHHHHhhhhHHHHh-h---------CHHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHH
Confidence 566667777777788888888887 2 1222333333333344444443322 2222211 12233445
Q ss_pred HhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHH
Q 002772 432 SRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVL 511 (882)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll 511 (882)
...|+++.|..-|-+... .-.-|.+-....++.+|+.+++.++. + +.-..-|.-+.
T Consensus 717 ~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqd---q----------------k~~s~yy~~ia 772 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQD---Q----------------KTASGYYGEIA 772 (1636)
T ss_pred HHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhh---h----------------ccccccchHHH
Confidence 566777777776655421 11234455566778888888887765 2 22333455666
Q ss_pred HhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhhHHHHHHHHHccCChhHH
Q 002772 512 PGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVR--NVITWNVIIMAYGMHGEGQEV 589 (882)
Q Consensus 512 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A 589 (882)
+.|++.|+++.|.+++... ..++--|+||.+.|++++|.++-.+...| .+..|-+-..-+-.+|++.+|
T Consensus 773 dhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred HHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhh
Confidence 7788888888888877542 23445678888888888888887776644 344555556667778888888
Q ss_pred HHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHH
Q 002772 590 LELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLI 669 (882)
Q Consensus 590 ~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~ 669 (882)
.++|-.. -.|+. .|..|-+.|..++.+.+.++-..+ .-.++...+..-|-..|++.+|.+-|
T Consensus 844 eqlyiti---------~~p~~-----aiqmydk~~~~ddmirlv~k~h~d----~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 844 EQLYITI---------GEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD----HLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hheeEEc---------cCchH-----HHHHHHhhCcchHHHHHHHHhChh----hhhHHHHHHHHHHHhccChhHHHHHH
Confidence 8777443 23553 245566777777776666543211 11233444566667778888887766
Q ss_pred HhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 670 NMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 670 ~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
-+.. -|.+-.+.|+..+-.+.|-++++ .-.-.+..-.+...|.-+--| +.|.+++++
T Consensus 906 lea~-------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 906 LEAG-------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred Hhhh-------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHHHHHhhCc--HHHHHHHHh
Confidence 6543 56666666666655555544433 222233333444444433333 566666654
No 77
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.90 E-value=1.4e-06 Score=88.26 Aligned_cols=116 Identities=12% Similarity=0.052 Sum_probs=64.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHH
Q 002772 363 NEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKT 442 (882)
Q Consensus 363 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 442 (882)
.|++.+|.++..+- ...+-.| ...|.....+....|+.+.+-.++.++.+.--.++..++-+........|+++.|+.
T Consensus 97 eG~~~qAEkl~~rn-ae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRN-AEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHh-hhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 57777777777665 3333222 223444445555566666666666666655434555555555555556666665555
Q ss_pred HHhhCC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 002772 443 IFDDME---VRDTVSWNTMITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 443 ~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
-.++.. ..+..........|.+.|++.+.+.++.+|.+
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k 215 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK 215 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444332 33444455555555555555555555555554
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.89 E-value=1e-07 Score=103.54 Aligned_cols=239 Identities=18% Similarity=0.140 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhCCCC----------Cee-eHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhcccc
Q 002772 422 YVQNALMDMYSRMGRIEISKTIFDDMEVR----------DTV-SWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNV 490 (882)
Q Consensus 422 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 490 (882)
.+..-|..+|...|+++.|..+++...+. .+. ..+.+...|...+++++|..+|.+++.....
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~------ 273 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE------ 273 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH------
Confidence 34444666666666666666666554311 111 1234556777888888888888888762211
Q ss_pred ccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----
Q 002772 491 YDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---- 566 (882)
Q Consensus 491 ~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---- 566 (882)
..-++... -..+++.|...|.+.|++++|...+++..
T Consensus 274 --------~~G~~h~~-------------------------------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~ 314 (508)
T KOG1840|consen 274 --------VFGEDHPA-------------------------------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYE 314 (508)
T ss_pred --------hcCCCCHH-------------------------------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 11122211 23355566667777777777666655432
Q ss_pred ------CCChh-hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh----hHHHHHHHHHhccCCHHHHHHHHHH
Q 002772 567 ------VRNVI-TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE----VTFIALFAACSHSGMVSEGMDLFYK 635 (882)
Q Consensus 567 ------~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~ 635 (882)
.+.+. -++.++..|...+++++|..++++..+.-. .-..++. -+++.|...|-+.|++++|.++|++
T Consensus 315 ~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~--~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 315 KLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL--DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 23333 345667778888999999999887765310 0022333 4788999999999999999999999
Q ss_pred hHHhc----C-CCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC--------CCCCCchhhHHHHHHHHHhcCchhHHHHH
Q 002772 636 MKDDY----G-IEP-SPDHYACVVDLLGRAGKVEDAYQLINMM--------PPEFDKAGAWSSLLGACRIHQNVEIGEIA 701 (882)
Q Consensus 636 m~~~~----~-~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m--------~~~p~~~~~~~~ll~a~~~~~~~~~a~~~ 701 (882)
+.... | ..+ ...+++.|...|.+.++..+|.++|.+. +..|+....+..|...|...|++|.|+++
T Consensus 393 ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~ 472 (508)
T KOG1840|consen 393 AIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEEL 472 (508)
T ss_pred HHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHH
Confidence 87652 1 122 2456788888899999999888888754 45667666899999999999999999999
Q ss_pred HHHHhc
Q 002772 702 AQNLFL 707 (882)
Q Consensus 702 ~~~~~~ 707 (882)
.++++.
T Consensus 473 ~~~~~~ 478 (508)
T KOG1840|consen 473 EEKVLN 478 (508)
T ss_pred HHHHHH
Confidence 887763
No 79
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.2e-05 Score=89.76 Aligned_cols=610 Identities=10% Similarity=0.072 Sum_probs=286.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHH
Q 002772 45 WIESLRSEARSNQFREAILSYIEMTRS---DIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVN 121 (882)
Q Consensus 45 ~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 121 (882)
|-.+...|.++|....|++.|.++.+- -+..+.-.-.-++. +...-.++...+.+..|...++. .+..+.-.+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~-yFg~lsve~s~eclkaml~~Nir-qNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIR-QNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHH-hhhHHHHHHHH
Confidence 777788899999999999888876442 12222222222333 33334677777888888888777 77777666666
Q ss_pred HHHhcCCCHHHHHHHHhccCC---------------CCceeHHHHHHHHHhcCCchHHHHHHHHHH------------HC
Q 002772 122 MYGKCGSDMWDVYKVFDRITE---------------KDQVSWNSMIATLCRFGKWDLALEAFRMML------------YS 174 (882)
Q Consensus 122 ~y~~~g~~~~~A~~~f~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------~~ 174 (882)
-|...- ..+..+++|+.... .|....-..|.+-|+.|++.+..++.++-. +.
T Consensus 687 ky~eql-g~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 687 KYHEQL-GAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHh-CHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 776655 56777777776542 244455577899999999988887765421 11
Q ss_pred ---CCCC-----ChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcC-CCchhHHHHHHHHHHhcCChhHHHHHHhcCCC
Q 002772 175 ---NVEP-----SSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAKTLFKSFED 245 (882)
Q Consensus 175 ---g~~p-----~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 245 (882)
.-.| |.+.|..=|-.+-.. .+...-.+++ +.+.. ...+.+...|++.=+ -++..+-+ -|.-
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyr---nn~~kyIE~y--VQkvNps~~p~VvG~LLD~dC----~E~~ik~L-i~~v 835 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYR---NNLQKYIEIY--VQKVNPSRTPQVVGALLDVDC----SEDFIKNL-ILSV 835 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHH---hhHHHHHHHH--HhhcCCcccchhhhhhhcCCC----cHHHHHHH-HHHH
Confidence 1111 111111111111110 1111111111 11111 111122222221110 01111100 0001
Q ss_pred CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHH----------HHHHHHHHHh---
Q 002772 246 RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTG----------KEIHAYALRN--- 312 (882)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a----------~~~~~~~~~~--- 312 (882)
+..+.-+.|+.-.-+.++..--+..++.....|.. |..|++++.+.|...++-.+- +.+=....+.
T Consensus 836 ~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 836 RGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred hccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCc
Confidence 22334444555555566666666677777777754 777788887777665442221 0111111110
Q ss_pred --------CC-------CCCchhHHHHHHHHhhcCCChHHHHHHHhc-----------c-----C-CCCceehHHHHHHH
Q 002772 313 --------DI-------LIDNSFVGSALVDMYCNCREVECGRRVFDF-----------I-----S-DKKIALWNAMITGY 360 (882)
Q Consensus 313 --------g~-------~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-----------m-----~-~~~~~~~~~li~~~ 360 (882)
|. +-.....+..+.....+..+.+.=.+++.+ . + ..|+.--+.-+.++
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAf 994 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAF 994 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHH
Confidence 00 000111122222222223332222222211 0 0 02333455566777
Q ss_pred hcCCChHHHHHHHHHHHHHcCCCCCcchH-hhHHhHhhcCCCCcchhhHHHHHHHh-----------------------C
Q 002772 361 GQNEYDEEALMLFIKMEEVAGLWPNATTM-SSVVPACVRSEAFPDKEGIHGHAIKL-----------------------G 416 (882)
Q Consensus 361 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----------------------g 416 (882)
...+-+.+-+++++++......-.....+ +.++-...+ .+.....++...+-.. .
T Consensus 995 MtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk 1073 (1666)
T KOG0985|consen 995 MTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK 1073 (1666)
T ss_pred HhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH
Confidence 77777888888887773322211111111 112211111 1111111111111111 0
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhcccccccccc
Q 002772 417 LGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDET 496 (882)
Q Consensus 417 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 496 (882)
+..+....+.||. .-+.++.|.++-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1074 f~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------------------ 1130 (1666)
T KOG0985|consen 1074 FDMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------------------ 1130 (1666)
T ss_pred hcccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------------------
Confidence 1122222222221 123344444444433332 34666666666666666666554432
Q ss_pred ccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHH
Q 002772 497 VLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVI 576 (882)
Q Consensus 497 ~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~l 576 (882)
-|+..|.-+++++.+.|.+++-...+..+.+..-.|. +-+.||-+|+|.+++.+-++.. ..||+.-...+
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI---AGPNVANIQQV 1200 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh---cCCCchhHHHH
Confidence 2344566666666666666666666666655544433 3345666666666665554443 23454444455
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 002772 577 IMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLL 656 (882)
Q Consensus 577 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l 656 (882)
..-|-..|.++.|.-+|.. ...|..|...+.+.|.+..|...-++. .+..+|.-+-.++
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~--------------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSN--------------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFAC 1259 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHH
Confidence 5555555555555444432 223444555555555555544433222 2334455454555
Q ss_pred hccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHc
Q 002772 657 GRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSA 726 (882)
Q Consensus 657 ~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 726 (882)
...+.+.-|. +....+--... -+.-|+..|...|-+++-...++..+.++--.-+.+..|+-+|++-
T Consensus 1260 vd~~EFrlAQ--iCGL~iivhad-eLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1260 VDKEEFRLAQ--ICGLNIIVHAD-ELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hchhhhhHHH--hcCceEEEehH-hHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 4444333221 00110000011 3455666666667777777777777777766667777777777654
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.4e-05 Score=79.29 Aligned_cols=155 Identities=16% Similarity=0.082 Sum_probs=75.6
Q ss_pred cCChhHHHHHHhcCCC--CCcccHHHHH-HHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccC--CChhHHHH
Q 002772 230 LGRVDDAKTLFKSFED--RDLVSWNTIV-SSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHL--EMLDTGKE 304 (882)
Q Consensus 230 ~g~~~~A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--~~~~~a~~ 304 (882)
.-.+++|++++..+.. |+....|.-+ -+|.+..-++-+.+++.--++. -||+ |+..-|.+|... =.-..+++
T Consensus 164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHH
Confidence 3456788888877654 4444555433 3556666677777777666553 3443 344444454322 12222333
Q ss_pred HHHHHHHhCCCCCchhHHHHHHH-HhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCC
Q 002772 305 IHAYALRNDILIDNSFVGSALVD-MYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLW 383 (882)
Q Consensus 305 ~~~~~~~~g~~~~~~~~~~~Li~-~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~ 383 (882)
-...+..++ ...-....-|+. -+.-...-+.|.+++-.+...=+.+--.++--|.+++++.+|..+.+++ ....
T Consensus 241 E~k~ladN~--~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl---~Ptt 315 (557)
T KOG3785|consen 241 EKKELADNI--DQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL---DPTT 315 (557)
T ss_pred HHHHHHhcc--cccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---CCCC
Confidence 333333333 111001111111 1111223345555544333222223334555678888899998888777 4555
Q ss_pred CCcchHhhH
Q 002772 384 PNATTMSSV 392 (882)
Q Consensus 384 p~~~t~~~l 392 (882)
|-.+..-.+
T Consensus 316 P~EyilKgv 324 (557)
T KOG3785|consen 316 PYEYILKGV 324 (557)
T ss_pred hHHHHHHHH
Confidence 555444333
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=8.8e-06 Score=82.48 Aligned_cols=405 Identities=9% Similarity=-0.027 Sum_probs=243.4
Q ss_pred CchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHH-HhcCC-ChHHHHHHHHHHHHHcCCCCCcchHhhHHh
Q 002772 317 DNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITG-YGQNE-YDEEALMLFIKMEEVAGLWPNATTMSSVVP 394 (882)
Q Consensus 317 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~-~~~~g-~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~ 394 (882)
.+.....-.+..|-..++-+.|.......+..-..--+.|+.+ +-+.| +-.++.--++...++..+..+. |.
T Consensus 95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~------i~ 168 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV------IE 168 (564)
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH------HH
Confidence 3444444556666667788888888887776533333344333 22222 2223333333332221111110 11
Q ss_pred HhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhc--CChHHHHHHHhhCC-----CCCeeeHHHHHHHHHhcCC
Q 002772 395 ACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRM--GRIEISKTIFDDME-----VRDTVSWNTMITGYTICGQ 467 (882)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~ 467 (882)
+..+.+ +..+..--..|-+...++.......-+.+|+.+ ++-..|...|-... ..|+....++...+...|+
T Consensus 169 ~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gd 247 (564)
T KOG1174|consen 169 ALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD 247 (564)
T ss_pred HHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcC
Confidence 100000 000011111111222333333333344444433 33333333332222 3366678888899999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcch----HhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHH
Q 002772 468 HGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSIT----LMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGS 543 (882)
Q Consensus 468 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 543 (882)
.++|...|++.+. +.|+.++ |..+ +...|+.+....+...+....- .....|-
T Consensus 248 n~~a~~~Fe~~~~-------------------~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~-~ta~~wf 304 (564)
T KOG1174|consen 248 YFQAEDIFSSTLC-------------------ANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVK-YTASHWF 304 (564)
T ss_pred chHHHHHHHHHhh-------------------CChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhh-cchhhhh
Confidence 9999999999864 5555443 2223 2445666666655555543220 1111111
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC-ChhHHHHHHHH
Q 002772 544 ALVDMYAKCGCLNFARRVFDLMPVR---NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP-NEVTFIALFAA 619 (882)
Q Consensus 544 ~li~~y~k~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p-d~~t~~~ll~a 619 (882)
.-........+++.|+.+-++..+- ++..|-.-...+.+.|+.++|.-.|+..+. ..| +...|..|+..
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~-------Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM-------LAPYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh-------cchhhHHHHHHHHHH
Confidence 1122333456788888887776633 344443334567788999999999999887 445 57799999999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHH-HHhhc-cCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchh
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVV-DLLGR-AGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVE 696 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~l~r-~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~ 696 (882)
|...|.+.||..+-+...+ -+..+..+.+.+. +.+.- ..--++|.+++++. ..+|+...+-..+.--|...|..+
T Consensus 378 YLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence 9999999999988777765 3344555555542 33332 22347889998864 678988878888888899999999
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHH
Q 002772 697 IGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLH 776 (882)
Q Consensus 697 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~ 776 (882)
.+...+++.+...||+ ..++.|+.++...+.+.+|.+.+..... ..|+.+...
T Consensus 456 D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl 508 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTL 508 (564)
T ss_pred hHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHH
Confidence 9999999999999965 5688999999999999999988886544 346666666
Q ss_pred HHHHHHHHHHH
Q 002772 777 GFLENLSERMR 787 (882)
Q Consensus 777 ~~l~~l~~~m~ 787 (882)
.-++.|.++|.
T Consensus 509 ~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 509 RGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHhccC
Confidence 66667776665
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=0.00014 Score=80.11 Aligned_cols=574 Identities=12% Similarity=0.073 Sum_probs=266.6
Q ss_pred CCcchHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhc--------CC
Q 002772 40 RCKESWIESLR--SEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYG--------YG 109 (882)
Q Consensus 40 ~~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~ 109 (882)
-|.++--+++. .|..-|+.+.|....+.++. ...|..+.+.|.+.++++-|+-....|.... .+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 34445555543 45667888888777766644 3468888888888888887776666553211 11
Q ss_pred CCChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002772 110 LSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALA 189 (882)
Q Consensus 110 ~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 189 (882)
.+...-....-.....| .+++|..++.+-.. |..|=..|-..|.+++|+++-+.=-+-.++.+-+.|.--|.+
T Consensus 798 -~~~e~eakvAvLAieLg-MlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 798 -NGEEDEAKVAVLAIELG-MLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -CCcchhhHHHHHHHHHh-hHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 11011111122223445 66666666654332 334444555567777777666543222222222222211111
Q ss_pred hccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHH
Q 002772 190 CSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVM 269 (882)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 269 (882)
. ++++.|...++.. |.+--.+. .|+. .++....+..+.+.++ ..|.---..+-..|+.+.|+.
T Consensus 871 ---r---~Di~~AleyyEK~---~~hafev~-rmL~-----e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 871 ---R---RDIEAALEYYEKA---GVHAFEVF-RMLK-----EYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred ---h---ccHHHHHHHHHhc---CChHHHHH-HHHH-----hChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHH
Confidence 1 2333332222211 10000000 0000 0111112222222222 233333344445677777777
Q ss_pred HHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCC
Q 002772 270 FLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKK 349 (882)
Q Consensus 270 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~ 349 (882)
+|...+. |-++++..+-.|+.++|-++-++ ..|....-.|..+|-..|++.+|...|.+..
T Consensus 934 ~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e-------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq--- 994 (1416)
T KOG3617|consen 934 FYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE-------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ--- 994 (1416)
T ss_pred HHHHhhh---------hhhheeeEeeccCchHHHHHHHh-------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---
Confidence 7776554 45566666777777777766543 2355566667777777777777777776542
Q ss_pred ceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHH
Q 002772 350 IALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMD 429 (882)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 429 (882)
++...|+.+-.++.-++ +.-+..| +...+.-.|..+|++ .|... .--+.
T Consensus 995 --afsnAIRlcKEnd~~d~-L~nlal~--------------------s~~~d~v~aArYyEe---~g~~~-----~~AVm 1043 (1416)
T KOG3617|consen 995 --AFSNAIRLCKENDMKDR-LANLALM--------------------SGGSDLVSAARYYEE---LGGYA-----HKAVM 1043 (1416)
T ss_pred --HHHHHHHHHHhcCHHHH-HHHHHhh--------------------cCchhHHHHHHHHHH---cchhh-----hHHHH
Confidence 34444444333322221 1111111 111111122222222 22111 12334
Q ss_pred HHHhcCChHHHHHHHhhCC--------------CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccc
Q 002772 430 MYSRMGRIEISKTIFDDME--------------VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDE 495 (882)
Q Consensus 430 ~y~~~g~~~~A~~~~~~m~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 495 (882)
.|-|.|.+.+|+++--.-. ..|....+--..-++.+.++++|..++....+
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~--------------- 1108 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE--------------- 1108 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------------
Confidence 5777777777766522111 11333444445566777888888888776654
Q ss_pred cccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHH--HhcCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 002772 496 TVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAI--RNMLAT---DVVVGSALVDMYAKCGCLNFARRVFDLMPVRNV 570 (882)
Q Consensus 496 ~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~g~~~---~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~ 570 (882)
|.-.+..|...+ +.-..++-..|. +.+..+ -..+...+.+.+.+.|.+..|-+-|.+.-.+
T Consensus 1109 -----------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-- 1174 (1416)
T KOG3617|consen 1109 -----------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-- 1174 (1416)
T ss_pred -----------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH--
Confidence 222333333222 111112212111 111111 1234555666677777777777666554311
Q ss_pred hhHHHHHHHHHccCChhH----------------HHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHH
Q 002772 571 ITWNVIIMAYGMHGEGQE----------------VLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFY 634 (882)
Q Consensus 571 ~~~~~li~~~~~~g~~~~----------------A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 634 (882)
-.-+.++.+.|+.++ |..+++. .+ .+-|..+...++.-|.+..-++.--.+|.
T Consensus 1175 ---l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQt---lD-----Wq~~pq~mK~I~tFYTKgqafd~LanFY~ 1243 (1416)
T KOG3617|consen 1175 ---LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQT---LD-----WQDNPQTMKDIETFYTKGQAFDHLANFYK 1243 (1416)
T ss_pred ---HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhh---cc-----cccChHHHhhhHhhhhcchhHHHHHHHHH
Confidence 112334444444332 2222221 11 33344444444444444333333333333
Q ss_pred HhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHH----------HHHHHhcC-chhHHHHHHH
Q 002772 635 KMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSL----------LGACRIHQ-NVEIGEIAAQ 703 (882)
Q Consensus 635 ~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~l----------l~a~~~~~-~~~~a~~~~~ 703 (882)
.... ..++.|..+-.+ .|-+++|.+.+.+...+......+++| +...+... |...+.+-.+
T Consensus 1244 ~cAq-----iEiee~q~ydKa---~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~ 1315 (1416)
T KOG3617|consen 1244 SCAQ-----IEIEELQTYDKA---MGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCT 1315 (1416)
T ss_pred HHHH-----hhHHHHhhhhHH---hHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2221 122222222221 234455555555443222222133333 22222222 3344444444
Q ss_pred HHhcCCCCCC------chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 704 NLFLLEPDVA------SHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 704 ~~~~l~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
.+++ +|..+ ..|..|+.-|....+|..|-+.++.|..+
T Consensus 1316 ~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1316 TLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 4443 34333 45778999999999999999999999875
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=3.8e-05 Score=81.82 Aligned_cols=435 Identities=13% Similarity=0.108 Sum_probs=240.0
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHH--HHHHHH-
Q 002772 152 IATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNA--LMAMYA- 228 (882)
Q Consensus 152 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--Li~~y~- 228 (882)
+.-+.++|++++|+.........+ +-|...+..-+-+.... +.++.+.. .+.+.+.. .+++. +=.+|+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~---~ky~~ALk---~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQL---DKYEDALK---LIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhh---hHHHHHHH---HHHhcchh--hhcchhhHHHHHHH
Confidence 345566788899999999888755 22333444444444444 44444442 22222210 11111 234444
Q ss_pred -hcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-ChhhHhhHHHHhccCCChhHHHHHH
Q 002772 229 -KLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKP-DGVSIASVLPACSHLEMLDTGKEIH 306 (882)
Q Consensus 229 -~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~ 306 (882)
+.+..|+|+..++....-|..+-..-...+.+.|++++|+++|+.+.+++..- |..--..++.+-... +.
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV- 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-
Confidence 57888899888885555554455555667788899999999999987765431 111122222221111 11
Q ss_pred HHHHHhCCCCC-chhHHHHHHHHhhcCCChHHHHHHHhcc--------CCCCce----------ehHHHHHHHhcCCChH
Q 002772 307 AYALRNDILID-NSFVGSALVDMYCNCREVECGRRVFDFI--------SDKKIA----------LWNAMITGYGQNEYDE 367 (882)
Q Consensus 307 ~~~~~~g~~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~m--------~~~~~~----------~~~~li~~~~~~g~~~ 367 (882)
..+......+. +-..+-.....+...|++.+|+++++.. .+.|.. .---|.-++-..|+-+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 01111110121 1112222344566788999998888776 223332 1112334566678889
Q ss_pred HHHHHHHHHHHHcCCCCCcchHhhH---HhHhhcCCCCcch--hhHHHHHH-----------HhCCCCchHHHHHHHHHH
Q 002772 368 EALMLFIKMEEVAGLWPNATTMSSV---VPACVRSEAFPDK--EGIHGHAI-----------KLGLGRDRYVQNALMDMY 431 (882)
Q Consensus 368 ~A~~l~~~m~~~~g~~p~~~t~~~l---l~~~~~~~~~~~a--~~~~~~~~-----------~~g~~~~~~~~~~Li~~y 431 (882)
+|..+|..... .-.+|....... |.+.....++..+ ...++... ...-......-+.|+.+|
T Consensus 242 ea~~iy~~~i~--~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIK--RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHH--hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888732 233444322222 2233333333332 11111100 000011122224455555
Q ss_pred HhcCChHHHHHHHhhCCCCC-eeeHHHHHHHHH--hcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC-cchH
Q 002772 432 SRMGRIEISKTIFDDMEVRD-TVSWNTMITGYT--ICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN-SITL 507 (882)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~-~~t~ 507 (882)
. +..+.++++-...+... ...+.+++.... +...+.+|.+++....+ +.+-+ ....
T Consensus 320 t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~------------------~~p~~s~~v~ 379 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD------------------GHPEKSKVVL 379 (652)
T ss_pred h--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc------------------cCCchhHHHH
Confidence 3 45566777766665332 233444444322 22356777777777765 33222 2334
Q ss_pred hhHHHhhcCcchHHHHHHHHH--------HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC------CCChh--
Q 002772 508 MTVLPGCGALSALAKGKEIHA--------YAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP------VRNVI-- 571 (882)
Q Consensus 508 ~~ll~a~~~~~~~~~a~~i~~--------~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~------~~~~~-- 571 (882)
...++.....|+++.|.+++. .+.+.+.. +.+..+++.+|.+.++-+.|..++++.. .+...
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 445566778899999999998 45454444 4456678889999888877777777654 22222
Q ss_pred --hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHH
Q 002772 572 --TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFY 634 (882)
Q Consensus 572 --~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 634 (882)
.|.-+...-.++|+.++|..+++++.+.+ ++|..+...++.+|++. +++.|..+-.
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~n------~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKFN------PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHhC------CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 23333344457799999999999998864 57788888888888774 4666665543
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=3.4e-05 Score=86.76 Aligned_cols=577 Identities=13% Similarity=0.020 Sum_probs=298.8
Q ss_pred hHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCC---CCceeHHHHHHHHHhcCCchHHHHHHHHH
Q 002772 95 LGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITE---KDQVSWNSMIATLCRFGKWDLALEAFRMM 171 (882)
Q Consensus 95 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 171 (882)
.+..++..+....+.+.-...|..|-..|.... +...|.+.|+...+ -|..+|......|++..+++.|..+.-.-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 344444455554544344567888888888888 88889999987665 36678888999999999999998883222
Q ss_pred HHCCCCC-ChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCccc
Q 002772 172 LYSNVEP-SSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVS 250 (882)
Q Consensus 172 ~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~ 250 (882)
-+ ..| -...++.+-.+.... ..++...+..-++...+..+.|...|..|..+|.++|++..|.++|+....-+..+
T Consensus 553 ~q--ka~a~~~k~nW~~rG~yyL-ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 553 AQ--KAPAFACKENWVQRGPYYL-EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hh--hchHHHHHhhhhhcccccc-CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 11 111 011111111221111 01445555555566666667788888888888888888888888887766533332
Q ss_pred HHH---HHHHHHcCCChHHHHHHHHHHHHCC------CCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhH
Q 002772 251 WNT---IVSSLSQNDKFLEAVMFLRQMALRG------IKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFV 321 (882)
Q Consensus 251 ~~~---li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 321 (882)
|-. ....-+..|.+.+|++.+....... ..--..++..+...+.-.|-...+..+++.
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek------------- 696 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK------------- 696 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH-------------
Confidence 221 1122355778888887777655421 000011111111111111111111111111
Q ss_pred HHHHHHHhhcCCChHHHHHHHhccCCC----CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhh
Q 002772 322 GSALVDMYCNCREVECGRRVFDFISDK----KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACV 397 (882)
Q Consensus 322 ~~~Li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~ 397 (882)
+...|.-.... +...|-. ...|..+|.+. + .. .|+......+..-.-
T Consensus 697 ----------------sie~f~~~l~h~~~~~~~~Wi~----------asdac~~f~q~-e-~~-~vn~h~l~il~~q~e 747 (1238)
T KOG1127|consen 697 ----------------SIESFIVSLIHSLQSDRLQWIV----------ASDACYIFSQE-E-PS-IVNMHYLIILSKQLE 747 (1238)
T ss_pred ----------------HHHHHHHHHHHhhhhhHHHHHH----------HhHHHHHHHHh-c-cc-chHHHHHHHHHHHHH
Confidence 11111100000 0011111 12233333333 1 00 222222222222111
Q ss_pred cCCCC---c---chhhHHHHHHHhCCCCchHHHHHHHHHHHh----cCC----hHHHHHHHhhCC---CCCeeeHHHHHH
Q 002772 398 RSEAF---P---DKEGIHGHAIKLGLGRDRYVQNALMDMYSR----MGR----IEISKTIFDDME---VRDTVSWNTMIT 460 (882)
Q Consensus 398 ~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~----~~~A~~~~~~m~---~~~~~~~~~li~ 460 (882)
..+.. + .|.+.+. ....+..+...|.-|+.-|.+ +|. ...|...+.... ..+...||.|-.
T Consensus 748 ~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGV 825 (1238)
T KOG1127|consen 748 KTGALKKNDLLFLGYECGI--AHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGV 825 (1238)
T ss_pred hcccCcchhHHHHHHHHhh--HHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 11111 1 0000000 011112223333333332222 222 234555555433 446667777655
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchh
Q 002772 461 GYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVV 540 (882)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 540 (882)
. ...|.+.-|...|-+-.. ..+.+..+|..+--.|....+++.|.+.+...+... +.+..
T Consensus 826 l-sg~gnva~aQHCfIks~~------------------sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~ 885 (1238)
T KOG1127|consen 826 L-SGIGNVACAQHCFIKSRF------------------SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLV 885 (1238)
T ss_pred h-hccchhhhhhhhhhhhhh------------------ccccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhH
Confidence 5 555667777777766654 345566777777777888888888888888776543 12333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC--------CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC----CCcccC
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMP--------VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSR----GGEVKP 608 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----~~~~~p 608 (882)
-|--..-.-...|+.-++..+|..-. -++..-|-+-..-..++|+.++-+..-+.+-..... -++.+-
T Consensus 886 ~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~ 965 (1238)
T KOG1127|consen 886 QWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQ 965 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc
Confidence 33222233345677777777776521 345555655555556677766544433332211000 000233
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHH----HHHhhccCCHHHHHHHHHhCCCCCCchhhHHH
Q 002772 609 NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACV----VDLLGRAGKVEDAYQLINMMPPEFDKAGAWSS 684 (882)
Q Consensus 609 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----i~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ 684 (882)
+...|........+.+..++|.+...+...-...+-+...|+.. ..++...|.++.|..-+...+.+-+.. +-+.
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEd-i~gt 1044 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDED-IRGT 1044 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHH-Hhhh
Confidence 36778888888888888888888877765433334455566643 344555788887776665544333333 3333
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHH---HHHHcCCchHHHHHHHHHHh
Q 002772 685 LLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSN---IYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 685 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~---~y~~~g~~~~a~~~~~~m~~ 741 (882)
=+.. .-.++++.+...|++++.+--++...-+++.. ....++.-+.|....-+...
T Consensus 1045 ~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1045 DLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 2222 44678999999999999886655554444443 33445555667665555443
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.77 E-value=7.1e-05 Score=80.69 Aligned_cols=379 Identities=12% Similarity=0.123 Sum_probs=217.9
Q ss_pred HHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHH
Q 002772 227 YAKLGRVDDAKTLFKSFED---RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGK 303 (882)
Q Consensus 227 y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 303 (882)
+...|+-++|......-.. ++.+.|..+--.+-...++++|++.|+..... .||..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~------------------- 109 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNL------------------- 109 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcH-------------------
Confidence 3345677777776665443 45677887777677777888888888777663 33322
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccC---CCCceehHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 002772 304 EIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFIS---DKKIALWNAMITGYGQNEYDEEALMLFIKMEEVA 380 (882)
Q Consensus 304 ~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 380 (882)
.++.-|.-.-+..++++.....-.... ......|..+..++.-.|+...|..+++......
T Consensus 110 ----------------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 110 ----------------QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred ----------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222222222222222222222111111 1234568888888888999999999999884444
Q ss_pred CCCCCcchHhhHHh------HhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCC--Ce
Q 002772 381 GLWPNATTMSSVVP------ACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVR--DT 452 (882)
Q Consensus 381 g~~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~--~~ 452 (882)
.-.|+...+..... .....|.++.+.+.+..-... +......-..-.+.+.+.+++++|..++..+..+ |.
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 34566665543332 233455555555544433221 2222333344566788999999999999988744 55
Q ss_pred eeHHHHH-HHHHhcCCHHHHH-HHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHH
Q 002772 453 VSWNTMI-TGYTICGQHGDAL-MLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYA 530 (882)
Q Consensus 453 ~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 530 (882)
.-|+-.. .++.+-.+.-+++ .+|....+ ..+-.......-++......-.+....++...
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~------------------~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSE------------------KYPRHECPRRLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhh------------------cCcccccchhccHHHhCcchhHHHHHHHHHHH
Confidence 5554443 3443333334444 55555543 11111111111112222233334444555666
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHH---H-HHHHHhhC--------------CCCChhhHHH--HHHHHHccCChhHHH
Q 002772 531 IRNMLATDVVVGSALVDMYAKCGCLN---F-ARRVFDLM--------------PVRNVITWNV--IIMAYGMHGEGQEVL 590 (882)
Q Consensus 531 ~~~g~~~~~~~~~~li~~y~k~g~~~---~-A~~~~~~m--------------~~~~~~~~~~--li~~~~~~g~~~~A~ 590 (882)
.+.|+++ ++..+...|-.-...+ + +..+...+ ..|....|+. ++..|-..|+++.|+
T Consensus 315 l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 315 LSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred hhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 6666543 3333333333211111 1 11111111 1455666664 677788999999999
Q ss_pred HHHHHHHHcCCCCCcccCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHH
Q 002772 591 ELLKNMVAEGSRGGEVKPNEV-TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLI 669 (882)
Q Consensus 591 ~l~~~m~~~g~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~ 669 (882)
.+.+..+. ..|+.+ -|..=..-+.|.|++++|..++++..+. -.||...-+--+.-+.|+.+.++|.++.
T Consensus 392 ~yId~AId-------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 392 EYIDLAID-------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHHHhc-------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHH
Confidence 99999988 458755 4555567789999999999999999863 3455555446677788999999999988
Q ss_pred HhCC
Q 002772 670 NMMP 673 (882)
Q Consensus 670 ~~m~ 673 (882)
....
T Consensus 463 skFT 466 (700)
T KOG1156|consen 463 SKFT 466 (700)
T ss_pred HHhh
Confidence 7664
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.73 E-value=0.00011 Score=80.80 Aligned_cols=245 Identities=14% Similarity=0.097 Sum_probs=140.3
Q ss_pred HhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-h
Q 002772 105 KYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITE---KDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPS-S 180 (882)
Q Consensus 105 ~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 180 (882)
...+. .|+.+|..|.-+...+| .++.+.+.|++... .....|+.+-..|.-.|....|+.+.+.-....-.|+ .
T Consensus 316 ~~~~q-nd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 316 LKKFQ-NDAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred Hhhhc-chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 33455 78999999999999999 99999999987542 2445799999999999999999999987654333343 3
Q ss_pred hhHHHHHHHhccCCcccchHHHHHHHHhhhhc--C---CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHH
Q 002772 181 FTLVSVALACSNLSRRDGLRLGRQVHGNSLRV--G---EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIV 255 (882)
Q Consensus 181 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--g---~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 255 (882)
..+-..-+.|.... +.+++|...-..++.. + ...+..|-.+--+|...- ....++.-
T Consensus 394 s~~Lmasklc~e~l--~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se-- 455 (799)
T KOG4162|consen 394 SVLLMASKLCIERL--KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE-- 455 (799)
T ss_pred hHHHHHHHHHHhch--hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH--
Confidence 33444444455331 3333333333333221 1 112222222222222110 01111111
Q ss_pred HHHHcCCChHHHHHHHHHHHHCC-CCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCC
Q 002772 256 SSLSQNDKFLEAVMFLRQMALRG-IKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCRE 334 (882)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~ 334 (882)
+.....++++.+++..+.+ -.|+..-|.++- ++..++++.|.+.....++.+ -..+...+..|.-.+.-.++
T Consensus 456 ----R~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 456 ----RDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred ----HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhh
Confidence 1112456777777776643 345444444443 345567888888888888875 56777778878778888888
Q ss_pred hHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHHHHHH
Q 002772 335 VECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALMLFIKM 376 (882)
Q Consensus 335 ~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 376 (882)
+.+|..+.+...+. |.+....-+..-..-++.++++.....+
T Consensus 529 ~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~ 573 (799)
T KOG4162|consen 529 LKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHK 573 (799)
T ss_pred hHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHH
Confidence 88888876654321 1111111112222245566666665555
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.69 E-value=0.00015 Score=81.78 Aligned_cols=642 Identities=12% Similarity=0.025 Sum_probs=330.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHH
Q 002772 44 SWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMY 123 (882)
Q Consensus 44 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 123 (882)
.|..|-..|....+...|...|+...+-.. .+..........|++..+++.|..+.-...+......-..-|..+--.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 455555566655566667777777665431 2444566677777777778777777222111110000111122222335
Q ss_pred HhcCCCHHHHHHHHhccCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHH---hccCCccc
Q 002772 124 GKCGSDMWDVYKVFDRITE---KDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALA---CSNLSRRD 197 (882)
Q Consensus 124 ~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~---~~~~~~~~ 197 (882)
.+.+ ...+|..-|+.... .|..+|..+..+|.++|....|+.+|..... +.|+. +|.....+ |.. |
T Consensus 573 Lea~-n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~----G 644 (1238)
T KOG1127|consen 573 LEAH-NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDN----G 644 (1238)
T ss_pred cCcc-chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHh----h
Confidence 5556 77777777765442 3778899999999999999999999987754 34542 33322222 222 5
Q ss_pred chHHHHHHHHhhhhcCCCchhHHHHHHHHHHhc-------CChhHHHHHHhcCCCCCcccHHHHHHHH-HcCCC----hH
Q 002772 198 GLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKL-------GRVDDAKTLFKSFEDRDLVSWNTIVSSL-SQNDK----FL 265 (882)
Q Consensus 198 ~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~-------g~~~~A~~~f~~m~~~~~~~~~~li~~~-~~~g~----~~ 265 (882)
..+.+....+.++..-.......+.|...+.++ |-..+|...|+. ....+...+... +.... ..
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek----sie~f~~~l~h~~~~~~~~Wi~as 720 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK----SIESFIVSLIHSLQSDRLQWIVAS 720 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH----HHHHHHHHHHHhhhhhHHHHHHHh
Confidence 566666666655544322222233333333332 222223333322 111221111111 11110 12
Q ss_pred HHHHHHHHHHHCCCCCChhhHhhHHHHhccCCCh---h---HHHHHHHHHHHhCCCCCchhHHHHHHHHhhc----C---
Q 002772 266 EAVMFLRQMALRGIKPDGVSIASVLPACSHLEML---D---TGKEIHAYALRNDILIDNSFVGSALVDMYCN----C--- 332 (882)
Q Consensus 266 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~----~--- 332 (882)
+|..+|-... .. .|+......+..-.-..+.. + .|-+.+-.-++ +..+...+..|+.-|.+ +
T Consensus 721 dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls---l~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 721 DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS---LAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH---HhhccchHHHHhHHHHHHHHHcCCc
Confidence 3344444333 11 33333333332222222222 1 11111111111 22223333333333322 2
Q ss_pred -CChHHHHHHHhccCC---CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhH
Q 002772 333 -REVECGRRVFDFISD---KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGI 408 (882)
Q Consensus 333 -g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 408 (882)
.+...|...+..-.. .+-..||.|--. ...|.+.-|.-.|-+- . ...+-...+|..+-..|....+++.|.+.
T Consensus 796 ~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks-~-~sep~~~~~W~NlgvL~l~n~d~E~A~~a 872 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKS-R-FSEPTCHCQWLNLGVLVLENQDFEHAEPA 872 (1238)
T ss_pred chhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhh-h-hccccchhheeccceeEEecccHHHhhHH
Confidence 223356666655432 455677776555 5556676666666554 2 12233455677777777888888888888
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhC-----C---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 002772 409 HGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDM-----E---VRDTVSWNTMITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 409 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
+....... +.+...|--..-.-...|+.-++..+|..- . -++..-|-.-..-..++|+.++-+...+++..
T Consensus 873 f~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 873 FSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred HHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 88776543 333333333333334567777777777652 1 22334444444455667776665544444322
Q ss_pred hhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHH-hcCCCchhHHH----HHHHHHHhcCCH
Q 002772 481 MEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIR-NMLATDVVVGS----ALVDMYAKCGCL 555 (882)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~----~li~~y~k~g~~ 555 (882)
. .+.+..-..+.+.+.+.|.......-+++..+.+.+...+++. .....|...|| .+...++..|.+
T Consensus 952 ---A-----s~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgef 1023 (1238)
T KOG1127|consen 952 ---A-----SLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEF 1023 (1238)
T ss_pred ---h-----HHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcch
Confidence 0 0000000014555566777777777777777777666655442 11223444455 344556677888
Q ss_pred HHHHHHHhhCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHHHHHHH
Q 002772 556 NFARRVFDLMP-VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSEGMDLF 633 (882)
Q Consensus 556 ~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~ 633 (882)
+.|..-+.... .-|...-..-+.. --.|+++++++.|++.+.--. -.-|. +....++-+...++.-+.|...+
T Consensus 1024 e~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~----se~d~vvLl~kva~~~g~~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1024 ESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISN----SESDKVVLLCKVAVCMGLARQKNDAQFLL 1098 (1238)
T ss_pred hhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcc----cccchhhhhHHHHHHHhhcccchHHHHHH
Confidence 88888777655 2222222222222 235789999999999987320 12232 34455555666777788888766
Q ss_pred HHhHHhcCCCCChhHHHHHHHHhh---ccCCHHHHHHHHHhCC----CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 002772 634 YKMKDDYGIEPSPDHYACVVDLLG---RAGKVEDAYQLINMMP----PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLF 706 (882)
Q Consensus 634 ~~m~~~~~~~p~~~~~~~li~~l~---r~g~~~eA~~~~~~m~----~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 706 (882)
-+... --+|+....-+|--++. .+-...-+++-++..+ +.-+.. .... -.+...|+-.......++++
T Consensus 1099 fe~~~--ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~-ll~e--~i~~~~~r~~~vk~~~qr~~ 1173 (1238)
T KOG1127|consen 1099 FEVKS--LSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPG-LLKE--LIYALQGRSVAVKKQIQRAV 1173 (1238)
T ss_pred HHHHH--hCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChh-HHHH--HHHHHhhhhHHHHHHHHHHH
Confidence 66654 23455554444433332 2222222222232221 111111 1122 23567788889999999999
Q ss_pred cCCCCCCchHHHHHHHHHH
Q 002772 707 LLEPDVASHYVLLSNIYSS 725 (882)
Q Consensus 707 ~l~p~~~~~~~~l~~~y~~ 725 (882)
-..|.++..|..|+.-|++
T Consensus 1174 h~~P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1174 HSNPGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred hcCCCChHHHHHHHHHHHH
Confidence 9999999999999876654
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.69 E-value=4.8e-05 Score=84.25 Aligned_cols=420 Identities=15% Similarity=0.148 Sum_probs=227.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCChhh-HhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCC
Q 002772 256 SSLSQNDKFLEAVMFLRQMALRGIKPDGVS-IASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCRE 334 (882)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~ 334 (882)
..+...|++++|++.+..-.. .-+|..+ +......+.+.|+.++|..++..+++.+ |.+...|..|..+..-...
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 345677888888888866433 2344443 3444555667777777777777777776 5555555555554422210
Q ss_pred hHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCC-cchhhHHHHHH
Q 002772 335 VECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAF-PDKEGIHGHAI 413 (882)
Q Consensus 335 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~ 413 (882)
......+...++|+++ . ..-|.......+.-.+.....+ ..+..++..++
T Consensus 88 --------------------------~~~~~~~~~~~~y~~l-~--~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 88 --------------------------LSDEDVEKLLELYDEL-A--EKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred --------------------------cccccHHHHHHHHHHH-H--HhCccccchhHhhcccCCHHHHHHHHHHHHHHHH
Confidence 0111234444555554 2 1223332222221111111111 12333444444
Q ss_pred HhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC------------------CCCeeeH--HHHHHHHHhcCCHHHHHH
Q 002772 414 KLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME------------------VRDTVSW--NTMITGYTICGQHGDALM 473 (882)
Q Consensus 414 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~------------------~~~~~~~--~~li~~~~~~g~~~~A~~ 473 (882)
+.|+++ +++.|-..|....+.+-..+++.... .|....| .-+...|...|++++|++
T Consensus 139 ~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 139 RKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred hcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 455432 34444444544333333333333221 1222234 445667888899999999
Q ss_pred HHHHHhhhhhhhhccccccccccccCCCCCc-chHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 002772 474 LLREMQNMEEEKNRNNVYDLDETVLRPKPNS-ITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKC 552 (882)
Q Consensus 474 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~ 552 (882)
.+++.++ ..|+. ..|..-...+-+.|++.+|.+..+.+..... -|.++.+-.+..+.++
T Consensus 216 ~Id~aI~-------------------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 216 YIDKAIE-------------------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHh-------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHC
Confidence 9998886 44554 3555666778889999999999988887663 3888888899999999
Q ss_pred CCHHHHHHHHhhCCCCCh----------hhHH--HHHHHHHccCChhHHHHHHHHHHHcCCCCCccc-------------
Q 002772 553 GCLNFARRVFDLMPVRNV----------ITWN--VIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVK------------- 607 (882)
Q Consensus 553 g~~~~A~~~~~~m~~~~~----------~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~------------- 607 (882)
|++++|.+++.....++. ..|- ....+|.+.|++..|+.-|....+.-.. +.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~---~~~DQfDFH~Yc~RK 352 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD---FEEDQFDFHSYCLRK 352 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HhcccccHHHHHHhh
Confidence 999999999988875542 2332 3467789999999998877766552100 11
Q ss_pred CChhHHHHHHHHHhccCC-------HHHHHHHHHHhHHhcCCCCChhH-----------HHHHHHHh---hccCCHHHHH
Q 002772 608 PNEVTFIALFAACSHSGM-------VSEGMDLFYKMKDDYGIEPSPDH-----------YACVVDLL---GRAGKVEDAY 666 (882)
Q Consensus 608 pd~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~~-----------~~~li~~l---~r~g~~~eA~ 666 (882)
....+|..++...-+... ...|.+++-.+...-........ -..+-.-. .+....+++.
T Consensus 353 ~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~ 432 (517)
T PF12569_consen 353 MTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAE 432 (517)
T ss_pred ccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHH
Confidence 222334444432211110 12233444333322000000000 00000000 0001111111
Q ss_pred HHHH--------------hC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchH
Q 002772 667 QLIN--------------MM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDK 731 (882)
Q Consensus 667 ~~~~--------------~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 731 (882)
..-. .. +...|.. ..+.-+ .....=++.|.+.++-+.+..|++..+|.+--.+|.+.|++--
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~D~D-p~GekL--~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LL 509 (517)
T PF12569_consen 433 KAAKKEPKKQQNKSKKKEKVEPKKKDDD-PLGEKL--LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLL 509 (517)
T ss_pred HHHhhhhhhhhccccccccccCCcCCCC-ccHHHH--hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHH
Confidence 1100 00 1111111 212111 1223356889999999999999999999999999999999998
Q ss_pred HHHHHH
Q 002772 732 AMDVRK 737 (882)
Q Consensus 732 a~~~~~ 737 (882)
|++.++
T Consensus 510 aLqaL~ 515 (517)
T PF12569_consen 510 ALQALK 515 (517)
T ss_pred HHHHHH
Confidence 887654
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=2.2e-06 Score=90.96 Aligned_cols=201 Identities=13% Similarity=0.046 Sum_probs=152.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC---Chh
Q 002772 538 DVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP---NEV 611 (882)
Q Consensus 538 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p---d~~ 611 (882)
+...|--|...-+..++-..|+..+.+.. +.|....-+|...|...|.-.+|+..++.-+....+-.-..+ +..
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~ 397 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENED 397 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccc
Confidence 34455556666666666666777776655 456777888888899999999999999888764310000000 100
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACR 690 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~ 690 (882)
+-.. ....+...+....++|-.+....+.++|++++.+|.-+|--.|.+++|.+.|+.. ..+|++...|+-|+..+.
T Consensus 398 ~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 398 FENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred ccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 0000 2223334455666777777665576789999999999999999999999999975 678999889999999999
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 691 IHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 691 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
...+.++|+.+|.++++|.|....+...|+-.|...|.++||.+.+-...
T Consensus 476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998776643
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=1.7e-06 Score=84.69 Aligned_cols=220 Identities=11% Similarity=-0.003 Sum_probs=123.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHh
Q 002772 354 NAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSR 433 (882)
Q Consensus 354 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 433 (882)
+-|-.+|.+.|.+.+|...|+.- ....|-..||..+ -..|.+
T Consensus 227 ~Q~gkCylrLgm~r~Aekqlqss---L~q~~~~dTfllL-----------------------------------skvY~r 268 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSS---LTQFPHPDTFLLL-----------------------------------SKVYQR 268 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHH---hhcCCchhHHHHH-----------------------------------HHHHHH
Confidence 34566667777777776666665 1223333444444 445555
Q ss_pred cCChHHHHHHHhhCCC--C-CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhH
Q 002772 434 MGRIEISKTIFDDMEV--R-DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTV 510 (882)
Q Consensus 434 ~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~l 510 (882)
..+.+.|+.+|.+-.+ | |+....-+...+...++.++|++++++..+ -...+.....++
T Consensus 269 idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk------------------~~~~nvEaiAci 330 (478)
T KOG1129|consen 269 IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK------------------LHPINVEAIACI 330 (478)
T ss_pred hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh------------------cCCccceeeeee
Confidence 5555555555554432 2 222233344555556677777777777765 233344455555
Q ss_pred HHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC--hhhHHHHHHHHHccC
Q 002772 511 LPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP----VRN--VITWNVIIMAYGMHG 584 (882)
Q Consensus 511 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~~--~~~~~~li~~~~~~g 584 (882)
-..+.-.++.+.|...+..+.+.|.. ++..|+.+.-++.-.++++-++.-|++.. .|+ ...|-.+.....-.|
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG 409 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIG 409 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEecc
Confidence 55555556666666666666666654 55566666666666666666666555433 333 234555555555566
Q ss_pred ChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 002772 585 EGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMK 637 (882)
Q Consensus 585 ~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 637 (882)
++.-|-+.|+-.+..+ |+ ...++.|.-.-.+.|++++|..+++...
T Consensus 410 D~nlA~rcfrlaL~~d-------~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 410 DFNLAKRCFRLALTSD-------AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred chHHHHHHHHHHhccC-------cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 6666666666665543 33 3455555555556666666666666554
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.57 E-value=0.00023 Score=76.95 Aligned_cols=413 Identities=10% Similarity=0.039 Sum_probs=209.0
Q ss_pred CCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHH
Q 002772 296 LEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALML 372 (882)
Q Consensus 296 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l 372 (882)
.++...+....+.+++. .+....+.....-.+...|+.++|......-... +.+.|..+.-.+-...++++|+..
T Consensus 20 ~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34455555555555552 3444444433333445566677776666554443 345677776666666777777777
Q ss_pred HHHHHHHcCCCCCcch-HhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--
Q 002772 373 FIKMEEVAGLWPNATT-MSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEV-- 449 (882)
Q Consensus 373 ~~~m~~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-- 449 (882)
|+.. ..+.||... +.-+--.-++.++++..........+.. +.....|..+..++.-.|+...|..+.+....
T Consensus 98 y~nA---l~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 98 YRNA---LKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHH---HhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7776 334454432 2222222234445544444444443322 22234455555555556666666655554331
Q ss_pred ---CCeeeHHHH------HHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchH-hhHHHhhcCcch
Q 002772 450 ---RDTVSWNTM------ITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITL-MTVLPGCGALSA 519 (882)
Q Consensus 450 ---~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~-~~ll~a~~~~~~ 519 (882)
++...+... .......|..++|++.+..-.. -..|...+ -+-..-..+++.
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-------------------~i~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-------------------QIVDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-------------------HHHHHHHHhhhHHHHHHHHhh
Confidence 122222211 1223345555555555544432 11111111 111223345566
Q ss_pred HHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHhcCCHHHHH-HHHhhCC--CCChhhHHHHHHHHHccCC-hhHHHHHHH
Q 002772 520 LAKGKEIHAYAIRNMLATDVV-VGSALVDMYAKCGCLNFAR-RVFDLMP--VRNVITWNVIIMAYGMHGE-GQEVLELLK 594 (882)
Q Consensus 520 ~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~k~g~~~~A~-~~~~~m~--~~~~~~~~~li~~~~~~g~-~~~A~~l~~ 594 (882)
+++|..++..++..+ ||.. .|-.+..++.+--+.-++. .+|.... .|-...-.-+--....... .+..-+++.
T Consensus 235 lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 235 LEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred HHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH
Confidence 666666666665543 2332 3333334443332333333 4444433 0100000000011111122 233444566
Q ss_pred HHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHH----HHHHHhHHhcCC----------CCChh--HHHHHHHHhhc
Q 002772 595 NMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGM----DLFYKMKDDYGI----------EPSPD--HYACVVDLLGR 658 (882)
Q Consensus 595 ~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~----~~~~~m~~~~~~----------~p~~~--~~~~li~~l~r 658 (882)
.+++.| ++| +|..+.+-+-.-...+--. .+...+... |. +|+.. ++-.++..+-+
T Consensus 313 ~~l~Kg-----~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 313 PLLSKG-----VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHhhcC-----CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccc-cCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 666766 443 2333333333222222111 122212111 11 34433 34567788889
Q ss_pred cCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 002772 659 AGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRK 737 (882)
Q Consensus 659 ~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 737 (882)
.|+++.|..+++.. .-.|..+..+-.-...+...|+++.|-..++++.+++-.|..+...-++-..++.+.++|.++..
T Consensus 384 ~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 99999999999875 34465554555556777888899999999999999987666655567777778889999999988
Q ss_pred HHHhCCC
Q 002772 738 KMKEMGV 744 (882)
Q Consensus 738 ~m~~~g~ 744 (882)
+..+.|.
T Consensus 464 kFTr~~~ 470 (700)
T KOG1156|consen 464 KFTREGF 470 (700)
T ss_pred Hhhhccc
Confidence 8877664
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.56 E-value=3.8e-05 Score=83.45 Aligned_cols=295 Identities=9% Similarity=-0.066 Sum_probs=166.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC---CCCeeeH---HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccc
Q 002772 424 QNALMDMYSRMGRIEISKTIFDDME---VRDTVSW---NTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETV 497 (882)
Q Consensus 424 ~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 497 (882)
+..+...|...|+.+.+.+.+.... .++...+ ......+...|++++|.+.+++..+
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~----------------- 71 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD----------------- 71 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 3334444455555555444444332 1122211 1123345667888888888888776
Q ss_pred cCCCCCcc-hHhh---HHHhhcCcchHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCC
Q 002772 498 LRPKPNSI-TLMT---VLPGCGALSALAKGKEIHAYAIRNMLAT-DVVVGSALVDMYAKCGCLNFARRVFDLMP---VRN 569 (882)
Q Consensus 498 ~~~~p~~~-t~~~---ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~ 569 (882)
. .|+.. .+.. ........+....+.+.... .....| .......+...+...|++++|...+++.. +.+
T Consensus 72 -~-~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~ 147 (355)
T cd05804 72 -D-YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD 147 (355)
T ss_pred -H-CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2 23332 3221 11111223444444444433 111222 23344556678888999999999998876 445
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh
Q 002772 570 VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE--VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD 647 (882)
Q Consensus 570 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 647 (882)
...+..+...|...|++++|++++++.+.... ..|+. ..+..+...+...|++++|..++++........+...
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~----~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~ 223 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD----CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPAL 223 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC----CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHH
Confidence 66777888888889999999999998887530 11232 2345667778888999999999988754211112221
Q ss_pred HH-H--HHHHHhhccCCHHHHHHH---HHhC-CCCCC--chhhHHHHHHHHHhcCchhHHHHHHHHHhcCC-C-------
Q 002772 648 HY-A--CVVDLLGRAGKVEDAYQL---INMM-PPEFD--KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLE-P------- 710 (882)
Q Consensus 648 ~~-~--~li~~l~r~g~~~eA~~~---~~~m-~~~p~--~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~-p------- 710 (882)
.. . .+...+...|..+.+..+ ...- +..|. ..........++...|+.+.|....+.+.... .
T Consensus 224 ~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 303 (355)
T cd05804 224 DLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQP 303 (355)
T ss_pred HHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhh
Confidence 11 1 223333334433222222 1111 11011 11122345566777888888888887765522 1
Q ss_pred -CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 711 -DVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 711 -~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
.......+.+..+...|++++|.+.+......+
T Consensus 304 ~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 304 ARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 234556788889999999999999888776543
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.7e-05 Score=82.15 Aligned_cols=216 Identities=11% Similarity=0.064 Sum_probs=137.4
Q ss_pred hhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----------hhHHHHH
Q 002772 508 MTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNV----------ITWNVII 577 (882)
Q Consensus 508 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~----------~~~~~li 577 (882)
.-+.++..+..+++.+.+-+...+... .+..-++....+|...|.+.+....-+...+..- .+...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344555556667777777777776655 4666667777788888777766655544332211 1122234
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH-HHHHHHHh
Q 002772 578 MAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDH-YACVVDLL 656 (882)
Q Consensus 578 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~l 656 (882)
.+|.+.++++.|+..|++.+... ..||..+ +....+++....+... -+.|.... ...=...+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~-----Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~ 368 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEH-----RTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEA 368 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhh-----cCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHH
Confidence 46667788888888888877765 4554432 2222333333333322 23333211 11114556
Q ss_pred hccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 002772 657 GRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDV 735 (882)
Q Consensus 657 ~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 735 (882)
-+.|++.+|...+.++ ...|++...+.....++...|++..|..-++..++++|+....|.-=+-++....+|++|.+.
T Consensus 369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888777765 346777767778888888888888888888888888888888888888888888888888887
Q ss_pred HHHHHhC
Q 002772 736 RKKMKEM 742 (882)
Q Consensus 736 ~~~m~~~ 742 (882)
+.+-.+.
T Consensus 449 y~eale~ 455 (539)
T KOG0548|consen 449 YQEALEL 455 (539)
T ss_pred HHHHHhc
Confidence 7765554
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.53 E-value=1.6e-05 Score=88.00 Aligned_cols=257 Identities=12% Similarity=0.005 Sum_probs=185.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcch-HhhHHHhhcCcchHHHHHHHHHHHHHhcCCCc
Q 002772 460 TGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSIT-LMTVLPGCGALSALAKGKEIHAYAIRNMLATD 538 (882)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 538 (882)
..+...|++++|++.+.+-.. ..+|..+ +......+.++|+.++|..++..+++.+. .+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~-------------------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn 71 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK-------------------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DN 71 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh-------------------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-Cc
Confidence 456778999999999977643 4455444 44556678899999999999999999874 35
Q ss_pred hhHHHHHHHHHHhc-----CCHHHHHHHHhhCC--CCChhhHHHHHHHHHccCCh-hHHHHHHHHHHHcCCCCCcccCCh
Q 002772 539 VVVGSALVDMYAKC-----GCLNFARRVFDLMP--VRNVITWNVIIMAYGMHGEG-QEVLELLKNMVAEGSRGGEVKPNE 610 (882)
Q Consensus 539 ~~~~~~li~~y~k~-----g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~~~~~~pd~ 610 (882)
..-|..|..+..-. ...+....+|+++. -|.......+.-.+.....+ ..+.+++..++..| +++
T Consensus 72 ~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg-----vPs-- 144 (517)
T PF12569_consen 72 YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG-----VPS-- 144 (517)
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC-----Cch--
Confidence 55566666666322 25677778888765 23333333333333332233 34556777788888 543
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhc---C----------CCCChh--HHHHHHHHhhccCCHHHHHHHHHhC-CC
Q 002772 611 VTFIALFAACSHSGMVSEGMDLFYKMKDDY---G----------IEPSPD--HYACVVDLLGRAGKVEDAYQLINMM-PP 674 (882)
Q Consensus 611 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~----------~~p~~~--~~~~li~~l~r~g~~~eA~~~~~~m-~~ 674 (882)
+|+.|-..|....+.+-..+++....... + -.|+.. ++..+...|.+.|++++|++++++. ..
T Consensus 145 -lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 145 -LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred -HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 56666666766666655556666554321 1 123332 4456688899999999999999965 56
Q ss_pred CCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 002772 675 EFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGV 744 (882)
Q Consensus 675 ~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 744 (882)
.|..+..+..-...+...|+++.|...++.+.++++.|--...-.+..+.++|+.++|.++.......+.
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 7888878888899999999999999999999999999988888899999999999999999998877665
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.53 E-value=1.3e-05 Score=75.53 Aligned_cols=192 Identities=14% Similarity=0.023 Sum_probs=135.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHH
Q 002772 543 SALVDMYAKCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFA 618 (882)
Q Consensus 543 ~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~ 618 (882)
..|.-.|...|+...|..-+++.. .| +..+|..+...|-+.|+.+.|.+-|++.+.. .|+ ....|....
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-------~p~~GdVLNNYG~ 111 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-------APNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-------CCCccchhhhhhH
Confidence 345667778888888888887766 23 4567777888888888888888888888774 354 445666666
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhH
Q 002772 619 ACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEI 697 (882)
Q Consensus 619 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~ 697 (882)
-+|..|.+++|...|+.....-...--..+|..++-+-.++|+.+.|.+.+++. ...|+.+...-.+..-....|+.-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 677778888888888887765222223567777777777888888888877764 4456655566677777777778888
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 698 GEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 698 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
|...+++...--+-.....-+.+.+-...|+-+-|.+.=.++..
T Consensus 192 Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888877776666666666777777777777776665555443
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.53 E-value=1.6e-06 Score=79.54 Aligned_cols=124 Identities=13% Similarity=-0.041 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHH
Q 002772 590 LELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLI 669 (882)
Q Consensus 590 ~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~ 669 (882)
..+|++.++ +.|+. +.....++...|++++|...|+..... -+.+...|..+..++.+.|++++|...+
T Consensus 13 ~~~~~~al~-------~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLS-------VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHH-------cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456677766 44664 445667778889999999999888752 2335777888888888999999999888
Q ss_pred HhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 002772 670 NMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYS 724 (882)
Q Consensus 670 ~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 724 (882)
++. ...|+....|..+..++...|+.++|...+++++++.|+++..+...+++..
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 876 4578777789999999999999999999999999999999998888777654
No 97
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=2.1e-06 Score=93.40 Aligned_cols=225 Identities=16% Similarity=0.138 Sum_probs=140.6
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccc
Q 002772 416 GLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDE 495 (882)
Q Consensus 416 g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 495 (882)
+++|--..-..+...+.++|-...|..+|++.. .|.-.|.+|+..|+..+|..+..+-.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--------------- 452 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--------------- 452 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc---------------
Confidence 345555566677788888888888888888764 577788888888888888877777654
Q ss_pred cccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHH
Q 002772 496 TVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNV 575 (882)
Q Consensus 496 ~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~ 575 (882)
- +||...|..|.+..-....++.|.++++....+-...|+.
T Consensus 453 ----k-----------------------------------~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~ 493 (777)
T KOG1128|consen 453 ----K-----------------------------------DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLAL 493 (777)
T ss_pred ----C-----------------------------------CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcc
Confidence 2 3344445555555444445555555555443221111111
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 002772 576 IIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDL 655 (882)
Q Consensus 576 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 655 (882)
+ ..+.++++++.+.|+.-.+.+ +-...||..+..+..+.++++.|.+.|.....
T Consensus 494 ~---~~~~~~fs~~~~hle~sl~~n------plq~~~wf~~G~~ALqlek~q~av~aF~rcvt----------------- 547 (777)
T KOG1128|consen 494 L---ILSNKDFSEADKHLERSLEIN------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT----------------- 547 (777)
T ss_pred c---cccchhHHHHHHHHHHHhhcC------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-----------------
Confidence 1 123577777777777766643 22345666666666666666666666665543
Q ss_pred hhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 002772 656 LGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDV 735 (882)
Q Consensus 656 l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 735 (882)
.+|+....|++|-.++.++++-.+|...++++++.+-++...+-...-+-.+.|.|++|.+.
T Consensus 548 ------------------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 548 ------------------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred ------------------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH
Confidence 35666667777777777777777777777777776655555555555555667777777777
Q ss_pred HHHHHhCC
Q 002772 736 RKKMKEMG 743 (882)
Q Consensus 736 ~~~m~~~g 743 (882)
+.++.+..
T Consensus 610 ~~rll~~~ 617 (777)
T KOG1128|consen 610 YHRLLDLR 617 (777)
T ss_pred HHHHHHhh
Confidence 76665543
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=0.00076 Score=74.48 Aligned_cols=119 Identities=11% Similarity=0.102 Sum_probs=75.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhC-C--------CCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCC
Q 002772 41 CKESWIESLRSEARSNQFREAILSYIEMTRS-D--------IQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLS 111 (882)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 111 (882)
+-+.|..|.+.+.+..+.+-|.-.+-.|... | -.|+ .+=..+.-.....|.+++|+.++.+-.+..
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 4457999999999999998887776666432 1 1222 222222222346788899998887765432
Q ss_pred ChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCC-ceeHHHHHHHHHhcCCchHHHHHHHHH
Q 002772 112 SVTVANTLVNMYGKCGSDMWDVYKVFDRITEKD-QVSWNSMIATLCRFGKWDLALEAFRMM 171 (882)
Q Consensus 112 ~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 171 (882)
.|-..|...| .+++|.++-+.-..-. ..||-.-..-+-..++.+.|++.|+.-
T Consensus 831 ------LlNKlyQs~g-~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 831 ------LLNKLYQSQG-MWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred ------HHHHHHHhcc-cHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 3445566778 8999988775432211 124555555556678888888888753
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.49 E-value=0.00018 Score=71.52 Aligned_cols=210 Identities=12% Similarity=0.047 Sum_probs=146.0
Q ss_pred CcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHH
Q 002772 516 ALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLEL 592 (882)
Q Consensus 516 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 592 (882)
..|+...+......+++.. +.|...+..-.++|...|.+..|+.-+.... ..+..+.--+-..+...|+.+.++..
T Consensus 167 ~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred cCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 3455555555555555432 4577777777889999999998887666544 55666666677778888999999999
Q ss_pred HHHHHHcCCCCCcccCChhHHH-----------HHH--HHHhccCCHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHH
Q 002772 593 LKNMVAEGSRGGEVKPNEVTFI-----------ALF--AACSHSGMVSEGMDLFYKMKDDYGIEPS-----PDHYACVVD 654 (882)
Q Consensus 593 ~~~m~~~g~~~~~~~pd~~t~~-----------~ll--~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~ 654 (882)
.++-++ +.||..... .|- ......+.+.++++-.+...+. .|. ...+..+-.
T Consensus 246 iRECLK-------ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 246 IRECLK-------LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHc-------cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeee
Confidence 999888 458864311 111 1234456677777777666543 444 223445566
Q ss_pred HhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHH
Q 002772 655 LLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAM 733 (882)
Q Consensus 655 ~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 733 (882)
++...|++-||+...++. .+.|+++.++.--..||......+.|+.-++++.+++|++..+-.-+ +.|.
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl----------e~Ak 385 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL----------ERAK 385 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH----------HHHH
Confidence 777889999999988775 57888777888888889888899999999999999999876543222 6677
Q ss_pred HHHHHHHhCCCcc
Q 002772 734 DVRKKMKEMGVRK 746 (882)
Q Consensus 734 ~~~~~m~~~g~~~ 746 (882)
++.++..++.+-|
T Consensus 386 rlkkqs~kRDYYK 398 (504)
T KOG0624|consen 386 RLKKQSGKRDYYK 398 (504)
T ss_pred HHHHHhccchHHH
Confidence 7666665554433
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=4.6e-06 Score=80.98 Aligned_cols=119 Identities=8% Similarity=0.059 Sum_probs=96.0
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHH-HhcCc--hhHH
Q 002772 623 SGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGAC-RIHQN--VEIG 698 (882)
Q Consensus 623 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~-~~~~~--~~~a 698 (882)
.++.+++...++...+ .-+.+...|..+...|...|++++|.+.+++. ...|++..+|..+..+. ...|+ .+.|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566777777776665 23456777888888888888888888888765 46788877888888864 66666 5899
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 699 EIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 699 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
..+++++++++|+++.++..|+..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987754
No 101
>PLN02789 farnesyltranstransferase
Probab=98.47 E-value=2.5e-05 Score=81.45 Aligned_cols=215 Identities=9% Similarity=0.037 Sum_probs=158.9
Q ss_pred CcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCC---CCChhhHHHHHHHHHccCCh--hHH
Q 002772 516 ALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCG-CLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEG--QEV 589 (882)
Q Consensus 516 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g-~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~--~~A 589 (882)
..+..++|......+++... -+..+|+....++.+.| .+++++..++++. ..+..+|+.....+.+.|+. +++
T Consensus 49 ~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 34567788888888877542 24456666666777778 6799999998876 55677888776666666663 788
Q ss_pred HHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhcc---CCH----
Q 002772 590 LELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRA---GKV---- 662 (882)
Q Consensus 590 ~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~---g~~---- 662 (882)
+++++++++.+ +-|...|.....++.+.|+++++++.++++++. . .-+...|+....++.+. |..
T Consensus 128 l~~~~kal~~d------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 128 LEFTRKILSLD------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred HHHHHHHHHhC------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccH
Confidence 99999999855 335678888888888999999999999999874 2 23455555555555443 323
Q ss_pred HHHHHHH-HhCCCCCCchhhHHHHHHHHHhcC----chhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcC----------
Q 002772 663 EDAYQLI-NMMPPEFDKAGAWSSLLGACRIHQ----NVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ---------- 727 (882)
Q Consensus 663 ~eA~~~~-~~m~~~p~~~~~~~~ll~a~~~~~----~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g---------- 727 (882)
+++.++. +.+...|++..+|+.+.+.+..++ +...+...+..++..+|.++.+...|+.+|+...
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 4677776 455678888889999999998843 3466888899999999999999999999998743
Q ss_pred --------CchHHHHHHHHH
Q 002772 728 --------LWDKAMDVRKKM 739 (882)
Q Consensus 728 --------~~~~a~~~~~~m 739 (882)
..++|.++.+.+
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred hccccccccHHHHHHHHHHH
Confidence 235677777766
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.45 E-value=5.5e-06 Score=85.24 Aligned_cols=158 Identities=13% Similarity=0.084 Sum_probs=100.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHh--
Q 002772 544 ALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACS-- 621 (882)
Q Consensus 544 ~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~-- 621 (882)
....+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.+ .|. +...+..++.
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-------eD~-~l~qLa~awv~l 176 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID-------EDS-ILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-------CCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CcH-HHHHHHHHHHHH
Confidence 3345667788888888888765 455555667778888888888888888887633 443 3333443332
Q ss_pred --ccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHhcCch-hH
Q 002772 622 --HSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINM-MPPEFDKAGAWSSLLGACRIHQNV-EI 697 (882)
Q Consensus 622 --~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~-m~~~p~~~~~~~~ll~a~~~~~~~-~~ 697 (882)
-.+.+.+|..+|+++.++ ..+++...+.+..+....|+++||.+++++ +...|+++.++.+++..+...|+. +.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred HhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 223578888888887763 345666677777777777777777777665 344566665666666666666655 56
Q ss_pred HHHHHHHHhcCCCCCC
Q 002772 698 GEIAAQNLFLLEPDVA 713 (882)
Q Consensus 698 a~~~~~~~~~l~p~~~ 713 (882)
+.+...++...+|+.+
T Consensus 255 ~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 255 AERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 6667777666677643
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.42 E-value=1.2e-05 Score=81.59 Aligned_cols=179 Identities=11% Similarity=0.021 Sum_probs=117.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCh----hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh
Q 002772 538 DVVVGSALVDMYAKCGCLNFARRVFDLMP--VRNV----ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV 611 (882)
Q Consensus 538 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~ 611 (882)
....+-.++..|.+.|++++|...|+++. .|+. ..|..+...|.+.|++++|+..|+++++.. |+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~ 104 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-------PNHP 104 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-------cCCC
Confidence 34455666777777888888888887776 4542 355667777777888888888888887743 4422
Q ss_pred ----HHHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHhhccCCHHHHHHHHHhCCCCCCc
Q 002772 612 ----TFIALFAACSHS--------GMVSEGMDLFYKMKDDYGIEPSPD-HYACVVDLLGRAGKVEDAYQLINMMPPEFDK 678 (882)
Q Consensus 612 ----t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~ 678 (882)
++..+..++... |+.++|.+.|+.+.+. .|+.. .+..+... +..... ..
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~---~~-------- 166 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNR---LA-------- 166 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHH---HH--------
Confidence 344444444443 5677777777777654 33321 12111111 001100 00
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 679 AGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA---SHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 679 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
. ....+...+...|+.+.|...++++++..|+++ ..+..++.+|...|++++|...++.+..+
T Consensus 167 ~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 G-KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred H-HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0 223456668888999999999999999977654 68899999999999999999998887665
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=3.4e-07 Score=59.57 Aligned_cols=34 Identities=32% Similarity=0.568 Sum_probs=29.8
Q ss_pred hCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC
Q 002772 415 LGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME 448 (882)
Q Consensus 415 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 448 (882)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999999884
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=9.4e-06 Score=74.48 Aligned_cols=108 Identities=9% Similarity=-0.023 Sum_probs=92.9
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 002772 631 DLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLE 709 (882)
Q Consensus 631 ~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 709 (882)
.+|+...+ +.|+ .+..+...+...|++++|.+.++.. ...|+...+|..+..++...|+.+.|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 3444 4667788899999999999999875 5678888799999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 710 PDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 710 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
|+++..+..++.+|...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999876643
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=0.00022 Score=75.55 Aligned_cols=166 Identities=13% Similarity=0.029 Sum_probs=118.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh-HHHHHHHHHh
Q 002772 545 LVDMYAKCGCLNFARRVFDLMPV--RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-TFIALFAACS 621 (882)
Q Consensus 545 li~~y~k~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-t~~~ll~a~~ 621 (882)
+...|.+.++++.|...|.+... ++... ..+....++++...+...- +.|+.. -...=.+.+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~-------~~pe~A~e~r~kGne~F 369 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY-------INPEKAEEEREKGNEAF 369 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh-------hChhHHHHHHHHHHHHH
Confidence 44577777888888888887541 12111 1223445666666665555 345532 2222356677
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHH
Q 002772 622 HSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEI 700 (882)
Q Consensus 622 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~ 700 (882)
+.|++..|+..|.++++. -+-|...|+.-.-+|.+.|.+.+|++=.+.. ...|+....|.--+.++....+.+.|..
T Consensus 370 k~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred hccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998874 2446778999999999999998888765543 4567766677777777788889999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHc
Q 002772 701 AAQNLFLLEPDVASHYVLLSNIYSSA 726 (882)
Q Consensus 701 ~~~~~~~l~p~~~~~~~~l~~~y~~~ 726 (882)
+++++++++|++..+...+...+...
T Consensus 448 ay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 448 AYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999988877777766653
No 107
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.39 E-value=5.4e-06 Score=74.44 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=102.0
Q ss_pred ChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 002772 645 SPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIY 723 (882)
Q Consensus 645 ~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 723 (882)
+.+..-.+...+...|++++|..+|+.. ...|.....|-.|...|...|+.+.|..++.+++.++|+++..+..++..|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455556677788899999999999976 467888889999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 002772 724 SSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMR 787 (882)
Q Consensus 724 ~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~ 787 (882)
...|+.++|.+-|+...... ..+|+..++..+.+.....+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999765531 256777888777777666553
No 108
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.37 E-value=0.00029 Score=70.08 Aligned_cols=288 Identities=12% Similarity=0.088 Sum_probs=184.3
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHH---HHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC
Q 002772 427 LMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMIT---GYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN 503 (882)
Q Consensus 427 Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~ 503 (882)
|...+...|++.+|+.-|....+-|+..|.++.. .|...|+...|+.-|.+.++ .+||
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle-------------------lKpD 104 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE-------------------LKPD 104 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh-------------------cCcc
Confidence 3344455566666666666666555555555432 45556666666666666553 4555
Q ss_pred cchHhh-HHHhhcCcchHHHHHHHHHHHHHhcCCCc--------------hhHHHHHHHHHHhcCCHHHHHHHHhhCC--
Q 002772 504 SITLMT-VLPGCGALSALAKGKEIHAYAIRNMLATD--------------VVVGSALVDMYAKCGCLNFARRVFDLMP-- 566 (882)
Q Consensus 504 ~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--------------~~~~~~li~~y~k~g~~~~A~~~~~~m~-- 566 (882)
-..-.. --..+.+.|.++.|..=|+.+++...... .......+..+.-.|+...|+.....+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 321110 11233455666666666666655432111 0111223344556788888888888765
Q ss_pred -CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 002772 567 -VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS 645 (882)
Q Consensus 567 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 645 (882)
..|...|..-..+|...|++..|+.-++..-+.. .-+..++.-+-..+-..|+.+.++...++.. .+.|+
T Consensus 185 ~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---Kldpd 255 (504)
T KOG0624|consen 185 QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS------QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPD 255 (504)
T ss_pred CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcc
Confidence 4577777788889999999999998877776642 2345566666677778899888888777776 44665
Q ss_pred hh----HHHHH---HH------HhhccCCHHHHHHHHHh-CCCCCCch----hhHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 646 PD----HYACV---VD------LLGRAGKVEDAYQLINM-MPPEFDKA----GAWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 646 ~~----~~~~l---i~------~l~r~g~~~eA~~~~~~-m~~~p~~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
-. +|..| +. ...+.+++.++.+--++ |..+|..+ .....+-..++.-+++-+|.....++++
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 22 23222 22 23456677776665554 34455522 1334444556777899999999999999
Q ss_pred CCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 708 LEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 708 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
++|+|..++..-+..|.-..++|+|..-+++..+-
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988877654
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.37 E-value=0.0076 Score=74.62 Aligned_cols=367 Identities=8% Similarity=-0.076 Sum_probs=214.9
Q ss_pred HHHhhcCCChHHHHHHHhccCCCCcee--hHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCc
Q 002772 326 VDMYCNCREVECGRRVFDFISDKKIAL--WNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFP 403 (882)
Q Consensus 326 i~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~ 403 (882)
...|...|++.+|........+.+... ...........|+...+...+..+ .......+..........+...++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l-p~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNAL-PWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhC-CHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 344555667766666665554432211 111222344567777776766655 21111122222223333445678888
Q ss_pred chhhHHHHHHHhCCC------Cc--hHHHHHHHHHHHhcCChHHHHHHHhhCCC--C--Ce----eeHHHHHHHHHhcCC
Q 002772 404 DKEGIHGHAIKLGLG------RD--RYVQNALMDMYSRMGRIEISKTIFDDMEV--R--DT----VSWNTMITGYTICGQ 467 (882)
Q Consensus 404 ~a~~~~~~~~~~g~~------~~--~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~--~~----~~~~~li~~~~~~g~ 467 (882)
++...+..+.+.--. +. ......+...+...|++++|...+++... + +. ..++.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 888888776543111 11 12222334456789999999988887542 1 21 234555566778999
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccccccccCCCCC--cchHhhHHHhhcCcchHHHHHHHHHHHHHh----cCCC---c
Q 002772 468 HGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN--SITLMTVLPGCGALSALAKGKEIHAYAIRN----MLAT---D 538 (882)
Q Consensus 468 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~---~ 538 (882)
+++|...+.+....... .-.+. ..++..+...+...|+++.|...+...... +... .
T Consensus 507 ~~~A~~~~~~al~~~~~--------------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 507 LARALAMMQQTEQMARQ--------------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHHHHHhh--------------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 99999999998752101 00111 123444555677889999999988776642 2211 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC------CC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh
Q 002772 539 VVVGSALVDMYAKCGCLNFARRVFDLMP------VR--NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE 610 (882)
Q Consensus 539 ~~~~~~li~~y~k~g~~~~A~~~~~~m~------~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~ 610 (882)
...+..+...+...|++++|...+.+.. .+ ....+..+...+...|++++|.+.+++...... .....
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~----~~~~~ 648 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG----NGRYH 648 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh----ccccc
Confidence 2345556677778899999998888764 11 123344456677889999999999988865320 01111
Q ss_pred hHHH-----HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHhhccCCHHHHHHHHHhCC-------CC
Q 002772 611 VTFI-----ALFAACSHSGMVSEGMDLFYKMKDDYGIEPS---PDHYACVVDLLGRAGKVEDAYQLINMMP-------PE 675 (882)
Q Consensus 611 ~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~l~r~g~~~eA~~~~~~m~-------~~ 675 (882)
..+. ..+..+...|..+.|.+++...... ..... ...+..+..++...|+.++|...+++.. ..
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~ 727 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLM 727 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCch
Confidence 1111 1123345578889998887775431 11111 1113456677888899999888887641 12
Q ss_pred CCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 676 FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 676 p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
++...++..+..++...|+.+.|...+++++++....
T Consensus 728 ~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 728 SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 2222245556677888899999999999988876443
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.37 E-value=5.4e-07 Score=58.61 Aligned_cols=33 Identities=33% Similarity=0.644 Sum_probs=24.3
Q ss_pred CCCCChhHHHHHHHHhhccCCHHHHHHHHHhCC
Q 002772 641 GIEPSPDHYACVVDLLGRAGKVEDAYQLINMMP 673 (882)
Q Consensus 641 ~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~ 673 (882)
|+.||..+|++||++|++.|++++|.+++++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.35 E-value=1.4e-05 Score=82.20 Aligned_cols=219 Identities=11% Similarity=-0.025 Sum_probs=142.6
Q ss_pred hHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC---hhhHHH-HHHHH
Q 002772 506 TLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-VRN---VITWNV-IIMAY 580 (882)
Q Consensus 506 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~~---~~~~~~-li~~~ 580 (882)
....+.+++..+|..+... ..+.+.. .|.......+...+...++-+.+..-+++.. .+. -.++.. ....+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444556666666655332 2332222 5555555445444443355666666665544 221 112222 22346
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh---HHHHHHHHhh
Q 002772 581 GMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD---HYACVVDLLG 657 (882)
Q Consensus 581 ~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~l~ 657 (882)
...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|.. ...+.+....
T Consensus 113 ~~~~~~~~AL~~l~~~-----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG-----------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLAT 178 (290)
T ss_dssp CCCCHHHHHHCCCTTT-----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcc-----------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHh
Confidence 6789999999988642 2344556677888899999999999999974 344422 2334444444
Q ss_pred ccCCHHHHHHHHHhCCCC-CCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCc-hHHHHH
Q 002772 658 RAGKVEDAYQLINMMPPE-FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLW-DKAMDV 735 (882)
Q Consensus 658 r~g~~~eA~~~~~~m~~~-p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~-~~a~~~ 735 (882)
-.+.+.+|..+|+++..+ +.++.+++.++.+....|++++|+..++.+++.+|.++.+...++-+....|+. +.+.+.
T Consensus 179 g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 446799999999998544 333338888888999999999999999999999999999999999899999998 667788
Q ss_pred HHHHHhC
Q 002772 736 RKKMKEM 742 (882)
Q Consensus 736 ~~~m~~~ 742 (882)
+.+++..
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 8887764
No 112
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00015 Score=70.54 Aligned_cols=182 Identities=13% Similarity=0.077 Sum_probs=100.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHH
Q 002772 545 LVDMYAKCGCLNFARRVFDLMPV-----RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAA 619 (882)
Q Consensus 545 li~~y~k~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a 619 (882)
-...+.+.|+.+.|.+.+-.|++ -|.+|...+.-.- ..|++.+..+-++-+++.+ +-...||..++-.
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n------PfP~ETFANlLll 319 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN------PFPPETFANLLLL 319 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC------CCChHHHHHHHHH
Confidence 34456788999999999999983 4677777664332 2455666666666666644 2235799999999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhc-cCCHHHHHHHHHhCCCCCCchhhHHHHH-HH-HHhcCc--
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGR-AGKVEDAYQLINMMPPEFDKAGAWSSLL-GA-CRIHQN-- 694 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r-~g~~~eA~~~~~~m~~~p~~~~~~~~ll-~a-~~~~~~-- 694 (882)
|++..-++.|..++.+-....---.+...|+ |++.+.- .-..++|.+-+......-.. -.+.+. .. -.++.+
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~--kLRklAi~vQe~r~~~dd 396 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTE--KLRKLAIQVQEARHNRDD 396 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccH
Confidence 9999989888888754322100001222233 3344433 34556665544433100000 111111 11 011111
Q ss_pred --hhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 695 --VEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 695 --~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
+..+.+-++..+|+-- .....-+++|....++..+.++|..-
T Consensus 397 ~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~S 440 (459)
T KOG4340|consen 397 EAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKS 440 (459)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHH
Confidence 1223334445555431 23456677888888888888877754
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.32 E-value=3.1e-05 Score=89.92 Aligned_cols=200 Identities=12% Similarity=0.105 Sum_probs=168.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccc
Q 002772 536 ATDVVVGSALVDMYAKCGCLNFARRVFDLMPV--------RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVK 607 (882)
Q Consensus 536 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~ 607 (882)
+.+...|-..|......++++.|++++++... --...|.++++.-...|.-+...++|+++.+.-
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc------- 1527 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC------- 1527 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-------
Confidence 44566787888888899999999999998761 124678888888888888889999999998843
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCC--chhhHHH
Q 002772 608 PNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFD--KAGAWSS 684 (882)
Q Consensus 608 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~--~~~~~~~ 684 (882)
-....|..|..-|.+.+..++|.++++.|.++++ -....|..+++.+.+...-++|.+++++. ..-|. ...+..-
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 2245688899999999999999999999999776 67788999999999999999999998764 33333 4446677
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 002772 685 LLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGV 744 (882)
Q Consensus 685 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 744 (882)
.+..-.++|+.++|+.+++-++.-.|.-...|..++++-.+.|..+.+.++|++....++
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 777788999999999999999999999999999999999999999999999999988765
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.30 E-value=4.7e-05 Score=73.97 Aligned_cols=157 Identities=11% Similarity=0.098 Sum_probs=121.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCC
Q 002772 546 VDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGM 625 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~ 625 (882)
+..|.+.|+++......+.+..|. ..|...++.++++..+++.++.+ +.|...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~------P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN------PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCC
Confidence 567888888887765554433221 01223567788888899988864 4456778888889999999
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHh-hccCC--HHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHH
Q 002772 626 VSEGMDLFYKMKDDYGIEP-SPDHYACVVDLL-GRAGK--VEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEI 700 (882)
Q Consensus 626 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l-~r~g~--~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~ 700 (882)
+++|...|++..+. .| +...+..+..++ .+.|+ .++|.+++++. ...|+...++..|..++...|+.+.|+.
T Consensus 89 ~~~A~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 99999999988853 44 677888888864 67777 59999999876 5678887799999999999999999999
Q ss_pred HHHHHhcCCCCCCchHHHH
Q 002772 701 AAQNLFLLEPDVASHYVLL 719 (882)
Q Consensus 701 ~~~~~~~l~p~~~~~~~~l 719 (882)
.+++++++.|.+..-+..+
T Consensus 166 ~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 166 LWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHhhCCCCccHHHHH
Confidence 9999999998776554433
No 115
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.29 E-value=0.00053 Score=74.48 Aligned_cols=263 Identities=13% Similarity=0.081 Sum_probs=169.1
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC--cchHhh-HHHhhcCcchHHHHHHHHHHH
Q 002772 454 SWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN--SITLMT-VLPGCGALSALAKGKEIHAYA 530 (882)
Q Consensus 454 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~--~~t~~~-ll~a~~~~~~~~~a~~i~~~~ 530 (882)
.|..+...+...|+.+++.+.+.+..+ ..+++ ...... ....+...|+++.+..++..+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~ 69 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQ------------------ALAARATERERAHVEALSAWIAGDLPKALALLEQL 69 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHH------------------HhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566677777888888777777765 22222 211111 122455678999999999998
Q ss_pred HHhcCCCchhHHH---HHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 002772 531 IRNMLATDVVVGS---ALVDMYAKCGCLNFARRVFDLMPV--RN-VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGG 604 (882)
Q Consensus 531 ~~~g~~~~~~~~~---~li~~y~k~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 604 (882)
.+.. +.+...+. .+.......|..+.+.+.+..... |+ ...+..+...+...|++++|++.+++.++..
T Consensus 70 l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---- 144 (355)
T cd05804 70 LDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN---- 144 (355)
T ss_pred HHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Confidence 8764 33443443 222222335667777777765332 22 2344455667889999999999999999954
Q ss_pred cccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHhhccCCHHHHHHHHHhCC-CCCCchh
Q 002772 605 EVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSP--DHYACVVDLLGRAGKVEDAYQLINMMP-PEFDKAG 680 (882)
Q Consensus 605 ~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~l~r~g~~~eA~~~~~~m~-~~p~~~~ 680 (882)
|+ ...+..+...+...|++++|..++++........|+. ..|..+...+...|++++|..++++.. ..|...
T Consensus 145 ---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~- 220 (355)
T cd05804 145 ---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESD- 220 (355)
T ss_pred ---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCC-
Confidence 55 4567778888999999999999999988642222332 345678899999999999999999862 233112
Q ss_pred hHH------HHHHHHHhcCchhHHHHH---HHHHhcCCCC--CCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 681 AWS------SLLGACRIHQNVEIGEIA---AQNLFLLEPD--VASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 681 ~~~------~ll~a~~~~~~~~~a~~~---~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
.+. .++.-+...|..+.+.+. ........|. ....-...+..+...|++++|..+++.++...
T Consensus 221 ~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 221 PALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 222 334444555655444444 2222221122 12222367778889999999999999887654
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=2.1e-05 Score=85.87 Aligned_cols=190 Identities=16% Similarity=0.177 Sum_probs=162.3
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHH
Q 002772 534 MLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTF 613 (882)
Q Consensus 534 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~ 613 (882)
+++|-...-..+.+.+.++|-..+|..+|++. ..|...|.+|...|+..+|.++..+-++. +||+.-|
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek-------~~d~~ly 460 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK-------DPDPRLY 460 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC-------CCcchhH
Confidence 35566667777899999999999999999985 47888999999999999999999988873 6999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHhc
Q 002772 614 IALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINM-MPPEFDKAGAWSSLLGACRIH 692 (882)
Q Consensus 614 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~-m~~~p~~~~~~~~ll~a~~~~ 692 (882)
..+.+.....-.+++|+++++....+ .-..+.....+.++++++.+.++. +..+|-..++|-.+..+..+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 99999998888899999998876543 112222334457999999998874 577888888999999999999
Q ss_pred CchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 693 QNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 693 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
++.+.+..+|...+.++|++...++.|+..|.+.|+-.+|...+++..+-+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999998876655
No 117
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.27 E-value=0.00022 Score=88.09 Aligned_cols=360 Identities=11% Similarity=0.014 Sum_probs=219.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHH----hHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHH
Q 002772 356 MITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVV----PACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMY 431 (882)
Q Consensus 356 li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 431 (882)
....+...|++.+|+..+... +|......++ ......|+++.....+..+.......+..........+
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a-------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAA-------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHC-------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 344566677777777655443 1111111111 22334456655555554432111122233334445556
Q ss_pred HhcCChHHHHHHHhhCC----CCC---eee-----HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccC
Q 002772 432 SRMGRIEISKTIFDDME----VRD---TVS-----WNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLR 499 (882)
Q Consensus 432 ~~~g~~~~A~~~~~~m~----~~~---~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 499 (882)
...|++++|...++... ..+ ... ...+...+...|++++|...+++... .
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~ 481 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA------------------E 481 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------c
Confidence 77899999888887653 111 111 11222345678999999999999875 1
Q ss_pred CCCCc-----chHhhHHHhhcCcchHHHHHHHHHHHHHhcCC-----CchhHHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 002772 500 PKPNS-----ITLMTVLPGCGALSALAKGKEIHAYAIRNMLA-----TDVVVGSALVDMYAKCGCLNFARRVFDLMP--- 566 (882)
Q Consensus 500 ~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-----~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--- 566 (882)
...+. .....+...+...|+++.|...+.......-. ........+...+...|++++|...+++..
T Consensus 482 ~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 482 LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 11111 22344445567789999999998877643111 123355667778889999999999887654
Q ss_pred ----CCC----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC--hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 002772 567 ----VRN----VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN--EVTFIALFAACSHSGMVSEGMDLFYKM 636 (882)
Q Consensus 567 ----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m 636 (882)
.++ ...+..+...+...|++++|.+.+++....... ..|. ...+..+.......|+.++|...++.+
T Consensus 562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 562 EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN---YQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc---cCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 223445555667789999999999998764200 1222 233444556677889999999999888
Q ss_pred HHhcCCCCChhHH-----HHHHHHhhccCCHHHHHHHHHhCCCC--CCch---hhHHHHHHHHHhcCchhHHHHHHHHHh
Q 002772 637 KDDYGIEPSPDHY-----ACVVDLLGRAGKVEDAYQLINMMPPE--FDKA---GAWSSLLGACRIHQNVEIGEIAAQNLF 706 (882)
Q Consensus 637 ~~~~~~~p~~~~~-----~~li~~l~r~g~~~eA~~~~~~m~~~--p~~~---~~~~~ll~a~~~~~~~~~a~~~~~~~~ 706 (882)
............+ ......+...|+.++|.+++...... .... ..+..+..++...|+.+.|...+++++
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 639 ENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6531111111111 11224455689999999998765321 1111 014566677888899999999999988
Q ss_pred cCCC------CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 707 LLEP------DVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 707 ~l~p------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
+... +....+..++.+|...|+.++|...+.+..+..
T Consensus 719 ~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 719 ENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7532 223467789999999999999999998876644
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.23 E-value=0.012 Score=62.60 Aligned_cols=427 Identities=11% Similarity=0.109 Sum_probs=224.3
Q ss_pred hhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhH
Q 002772 210 LRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFED--R-DLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSI 286 (882)
Q Consensus 210 ~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 286 (882)
++..+.|...|+.||.-+... .+++++++++++.. | ....|..-|.+-....+++....+|.+.+..-...|..
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW-- 89 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLW-- 89 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHH--
Confidence 344478899999999988766 99999999999875 3 45679999999999999999999999988765544443
Q ss_pred hhHHHHhcc-CCChhH----HHHHHHHHHH-hCCCCC-chhHHHHHHHHh---------hcCCChHHHHHHHhccCCCCc
Q 002772 287 ASVLPACSH-LEMLDT----GKEIHAYALR-NDILID-NSFVGSALVDMY---------CNCREVECGRRVFDFISDKKI 350 (882)
Q Consensus 287 ~~ll~a~~~-~~~~~~----a~~~~~~~~~-~g~~~~-~~~~~~~Li~~y---------~~~g~~~~A~~~f~~m~~~~~ 350 (882)
..-|.-..+ .++... -.+.|+..+. .| .++ .-..|+..+... ....+++..++++.++.....
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 222322221 122222 2234444443 33 322 233455555433 334566777788887754311
Q ss_pred e----ehHH------HHHHH-------hcCCChHHHHHHHHHHHH-HcCCCCCcch---------------HhhHHhHhh
Q 002772 351 A----LWNA------MITGY-------GQNEYDEEALMLFIKMEE-VAGLWPNATT---------------MSSVVPACV 397 (882)
Q Consensus 351 ~----~~~~------li~~~-------~~~g~~~~A~~l~~~m~~-~~g~~p~~~t---------------~~~ll~~~~ 397 (882)
. .|+- =|+.. -+...+..|.+++++... ..|..-+..+ +..+|.- -
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-E 247 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-E 247 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-H
Confidence 1 1221 11111 123345667777777611 1233222222 1111111 1
Q ss_pred cCCCCc-c--------hhhHHHHHH-HhCCCCchHHH-----HHHHHHHHhcCCh-------HHHHHHHhhCCCC----C
Q 002772 398 RSEAFP-D--------KEGIHGHAI-KLGLGRDRYVQ-----NALMDMYSRMGRI-------EISKTIFDDMEVR----D 451 (882)
Q Consensus 398 ~~~~~~-~--------a~~~~~~~~-~~g~~~~~~~~-----~~Li~~y~~~g~~-------~~A~~~~~~m~~~----~ 451 (882)
+.+.+. + ..-++++.+ -.++.|++... ...-+.+...|+. +++.++++....- +
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 111111 0 011122221 22344433211 1111233334433 2333333332211 1
Q ss_pred eeeHHHHHHHH---HhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHH
Q 002772 452 TVSWNTMITGY---TICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHA 528 (882)
Q Consensus 452 ~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 528 (882)
..+|..+..-= ....+.+.....+.+.... . ..+|+ .+|...++..-+..-++.|+.+|.
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~--~--------------~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKI--E--------------DIDLT-LVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh--h--------------ccCCc-eehhHHHHHHHHhhhHHHHHHHHH
Confidence 11111111100 0001233334444444331 0 23333 345566666666777777777777
Q ss_pred HHHHhcCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhH-HHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 002772 529 YAIRNMLAT-DVVVGSALVDMYAKCGCLNFARRVFDLMP--VRNVITW-NVIIMAYGMHGEGQEVLELLKNMVAEGSRGG 604 (882)
Q Consensus 529 ~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 604 (882)
.+.+.+..+ +++++++++.-|| .++.+-|.++|+--. -+|...| +..+.-+...|+-..|-.+|++.+..+
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~---- 465 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV---- 465 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc----
Confidence 777766665 7777777777776 466777777777544 3344333 344555566677777777777777765
Q ss_pred cccCCh--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--CCCChhHHHHHHHHhhccCCHHH
Q 002772 605 EVKPNE--VTFIALFAACSHSGMVSEGMDLFYKMKDDYG--IEPSPDHYACVVDLLGRAGKVED 664 (882)
Q Consensus 605 ~~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~l~r~g~~~e 664 (882)
+.||. ..|..+|.-=+.-|++..+.++-+++...+. ..|...+-..+++.|+=.++...
T Consensus 466 -l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 466 -LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred -CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 56653 4677777777777777777777777666544 44444455555666655554433
No 119
>PLN02789 farnesyltranstransferase
Probab=98.22 E-value=8.9e-05 Score=77.43 Aligned_cols=187 Identities=11% Similarity=0.089 Sum_probs=138.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHH
Q 002772 544 ALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHG-EGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFA 618 (882)
Q Consensus 544 ~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~ 618 (882)
.+-..+.+.++.++|..+.+++. +.+..+|+.....+...| +++++++.++++++.+ |+ ..+|..-..
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-------pknyqaW~~R~~ 114 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-------PKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-------CcchHHhHHHHH
Confidence 34444566788899999998876 335667887767777777 5799999999999865 44 445665544
Q ss_pred HHhccCC--HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhc---
Q 002772 619 ACSHSGM--VSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIH--- 692 (882)
Q Consensus 619 a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~--- 692 (882)
.+.+.|. .+++..+++.+.+. -+-+...|+...-++.+.|++++|++.++++ ...|++..+|+.....+...
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 5555565 36788899888853 2335777888888888999999999999987 45677777999988777654
Q ss_pred Cch----hHHHHHHHHHhcCCCCCCchHHHHHHHHHHc----CCchHHHHHHHHH
Q 002772 693 QNV----EIGEIAAQNLFLLEPDVASHYVLLSNIYSSA----QLWDKAMDVRKKM 739 (882)
Q Consensus 693 ~~~----~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~----g~~~~a~~~~~~m 739 (882)
|.. +......+++++++|+|.++|..+..+|... ++..+|.+...+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 222 4567777899999999999999999999873 3445666666543
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.21 E-value=8.9e-05 Score=71.58 Aligned_cols=153 Identities=12% Similarity=0.070 Sum_probs=85.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 002772 575 VIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVD 654 (882)
Q Consensus 575 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 654 (882)
.+-..+...|+.+..+.+..+..... .-|.......+......|++.+|...|.+... .-++|...|+.+.-
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lga 142 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY------PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGA 142 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC------cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHH
Confidence 34444555555555555555443321 11222333355555556666666666666554 44455566666666
Q ss_pred HhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHH
Q 002772 655 LLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAM 733 (882)
Q Consensus 655 ~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 733 (882)
.|.+.|++++|..-|.+. ...|+.+.+.++|...+...|+.+.|+..+.++....+.++.+-..|.-+....|++++|.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 666666666665544433 3445544466666666666666666666666666666666666666666666666666665
Q ss_pred HH
Q 002772 734 DV 735 (882)
Q Consensus 734 ~~ 735 (882)
++
T Consensus 223 ~i 224 (257)
T COG5010 223 DI 224 (257)
T ss_pred hh
Confidence 43
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.21 E-value=5.8e-05 Score=76.49 Aligned_cols=182 Identities=13% Similarity=0.005 Sum_probs=127.7
Q ss_pred cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-hh---hHHH
Q 002772 504 SITLMTVLPGCGALSALAKGKEIHAYAIRNMLAT--DVVVGSALVDMYAKCGCLNFARRVFDLMP--VRN-VI---TWNV 575 (882)
Q Consensus 504 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~-~~---~~~~ 575 (882)
...+......+...|+++.|...+..+.+..... ....+..+...|.+.|++++|...|+++. .|+ .. +|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3456666778889999999999999988764321 12466778899999999999999999987 343 32 4555
Q ss_pred HHHHHHcc--------CChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh
Q 002772 576 IIMAYGMH--------GEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD 647 (882)
Q Consensus 576 li~~~~~~--------g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 647 (882)
+..++.+. |+.++|++.|+++.. ..|+..-....+..... ... ... .
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~a~~~~~~---~~~------~~~---------~ 167 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR-------RYPNSEYAPDAKKRMDY---LRN------RLA---------G 167 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH-------HCCCChhHHHHHHHHHH---HHH------HHH---------H
Confidence 66666666 788999999999988 68876432211111100 000 000 1
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhC----CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 002772 648 HYACVVDLLGRAGKVEDAYQLINMM----PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEP 710 (882)
Q Consensus 648 ~~~~li~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 710 (882)
....+.+.+.+.|++++|...+++. |..|....+|..+..++...|+.+.|...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1234667788899999998888765 33454455888999999999999999998887766655
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.20 E-value=0.0001 Score=85.86 Aligned_cols=226 Identities=16% Similarity=0.126 Sum_probs=127.4
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcc-----hHhhHHHhhcCcchHHHHHHH
Q 002772 452 TVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSI-----TLMTVLPGCGALSALAKGKEI 526 (882)
Q Consensus 452 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~-----t~~~ll~a~~~~~~~~~a~~i 526 (882)
.+.|-..|.-..+.++.++|.+++++.+. .+.+... .|.++++.--.-|.-+...++
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~------------------tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALK------------------TINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhh------------------hCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 44566666666666667777777666665 2322211 122222222222233334444
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 002772 527 HAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRG 603 (882)
Q Consensus 527 ~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 603 (882)
|.++.+.. ....+|..|...|.+.++.++|-++|+.|. ......|...+..+.++.+.+.|-+++++.++.
T Consensus 1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---- 1593 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---- 1593 (1710)
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh----
Confidence 44444332 123466677777777777777777777776 234566777777777777777777777777763
Q ss_pred CcccCC--hhHHHHHH-HHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCC---CCCC
Q 002772 604 GEVKPN--EVTFIALF-AACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMP---PEFD 677 (882)
Q Consensus 604 ~~~~pd--~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~---~~p~ 677 (882)
-|- ++-|.+-. ..-.+.|+.+.|+.+|+..... .+-..+.|+.++++=.+.|..+.+..+|++.- ..|.
T Consensus 1594 ---lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1594 ---LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred ---cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 343 33333222 2224567777777777777663 23345667777777777777777777776541 1111
Q ss_pred c-hhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 002772 678 K-AGAWSSLLGACRIHQNVEIGEIAAQNLF 706 (882)
Q Consensus 678 ~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 706 (882)
. ...+.-.|..-..|||-+..+.+-.++.
T Consensus 1669 kmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1669 KMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 1145555555566666555555544433
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.15 E-value=8.6e-05 Score=85.51 Aligned_cols=190 Identities=10% Similarity=0.046 Sum_probs=143.8
Q ss_pred cchHhhHH-HhhcCcchHHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC------CCChhhHHH
Q 002772 504 SITLMTVL-PGCGALSALAKG-KEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP------VRNVITWNV 575 (882)
Q Consensus 504 ~~t~~~ll-~a~~~~~~~~~a-~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~------~~~~~~~~~ 575 (882)
..|...++ .+.+..|..+++ .++++++.+ ...+.|.+..+..-+-+.. ..++..+-.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ---------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVL 91 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH---------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHH
Confidence 33444444 456777776655 666666542 2233333333332222221 345788888
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 002772 576 IIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVD 654 (882)
Q Consensus 576 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 654 (882)
|.....+.|++++|+.+++...+ +.||. ..+..+...+.+.+++++|+..+++... .-+-+..+...+..
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~-------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~ 162 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQ-------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHh-------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 88999999999999999999999 66885 4677888899999999999999999986 23335778888999
Q ss_pred HhhccCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHH
Q 002772 655 LLGRAGKVEDAYQLINMMP-PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYV 717 (882)
Q Consensus 655 ~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 717 (882)
++.+.|++++|.++|++.- ..|+...+|-++..++...|+.+.|..+|+++++...+-...|.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999999999999999874 56777779999999999999999999999999998765545433
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=7.4e-05 Score=72.12 Aligned_cols=136 Identities=14% Similarity=0.033 Sum_probs=114.3
Q ss_pred ccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHH
Q 002772 606 VKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSS 684 (882)
Q Consensus 606 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ 684 (882)
..|+......+-.++...|+-+....+...... ...-+......++....+.|++.+|...+.+. ...|++...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 346533336667778888998888888877654 33445566667999999999999999999887 456777779999
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 685 LLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 685 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
+..+|-+.|+++.|+..+.+++++.|.++.++..|+..|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998776654
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.13 E-value=0.00017 Score=83.19 Aligned_cols=143 Identities=6% Similarity=-0.027 Sum_probs=113.2
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh
Q 002772 534 MLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE 610 (882)
Q Consensus 534 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~ 610 (882)
.+..+...+-.|.......|.+++|..+++... .| +...+..++..+.+.+++++|+..+++.+.. .|+.
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-------~p~~ 153 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-------GSSS 153 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-------CCCC
Confidence 355668888889999999999999999999876 44 5667788889999999999999999999985 4876
Q ss_pred hH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCC--CCCCchhhHHHHH
Q 002772 611 VT-FIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMP--PEFDKAGAWSSLL 686 (882)
Q Consensus 611 ~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~~ll 686 (882)
.+ ...+..++.+.|.+++|..+|+++.. ..+-+...+..+..+|-+.|+.++|...|++.- ..|... .++.++
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~-~~~~~~ 229 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR-KLTRRL 229 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH-HHHHHH
Confidence 55 45555667889999999999999986 333347788899999999999999999998762 334443 444443
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.00068 Score=71.34 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=73.8
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHH
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGE 699 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~ 699 (882)
...|..++|+..++.+.. ..+-|+.......+.+.+.++.++|.+.++++ ...|+..-.|-++..++.+.|+..+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 345666777777766654 23334445555666677777777777766655 345554436666666777777777777
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 700 IAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 700 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
...+..+.-+|+|+..|..|+..|...|+-.+|...+.++
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 7777777777777777777777666666666655555443
No 127
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.00012 Score=78.02 Aligned_cols=223 Identities=15% Similarity=0.092 Sum_probs=159.0
Q ss_pred hcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCC---CeeeHHHHHHHHHhcCCHHHHHH
Q 002772 397 VRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVR---DTVSWNTMITGYTICGQHGDALM 473 (882)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 473 (882)
.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+.+..+- |....-+|...|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 35566777777777777765 556677777877778888877788888777643 45556667778999999999999
Q ss_pred HHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHH-HhcCCCchhHHHHHHHHHHhc
Q 002772 474 LLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAI-RNMLATDVVVGSALVDMYAKC 552 (882)
Q Consensus 474 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~-~~g~~~~~~~~~~li~~y~k~ 552 (882)
.++.-+... ....+... -.++..+-.. ........+....++|-.+. ..+...|+.++..|.-.|--.
T Consensus 375 ~L~~Wi~~~----p~y~~l~~-----a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 375 MLDKWIRNK----PKYVHLVS-----AGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHhC----ccchhccc-----cCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 999876510 00000000 0001000000 22333344455555555554 455568889999999999999
Q ss_pred CCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHH
Q 002772 553 GCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSE 628 (882)
Q Consensus 553 g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~ 628 (882)
|++++|...|+... +-|...||-|...++...+.++|++.|++.++ ++|+- .....|.-+|...|.+++
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq-------LqP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ-------LQPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh-------cCCCeeeeehhhhhhhhhhhhHHH
Confidence 99999999999876 44788999999999999999999999999999 77984 355667778999999999
Q ss_pred HHHHHHHhHH
Q 002772 629 GMDLFYKMKD 638 (882)
Q Consensus 629 a~~~~~~m~~ 638 (882)
|.+.|-..+.
T Consensus 517 A~~hlL~AL~ 526 (579)
T KOG1125|consen 517 AVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.12 E-value=4e-05 Score=69.87 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=80.9
Q ss_pred hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 002772 646 PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYS 724 (882)
Q Consensus 646 ~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 724 (882)
......+...+...|++++|.+.++.. ...|+....|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 455666777777888888888888765 3467666688888889999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 002772 725 SAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 725 ~~g~~~~a~~~~~~m~~~ 742 (882)
..|++++|...++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999998876664
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=0.00043 Score=72.78 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=116.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHH-HHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALF-AACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYA 650 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 650 (882)
+-.....+...|++++|+..++.++.. .||..-|..+. ..+...++.++|.+.++.+... .|+ ....-
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~ 378 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA-------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQL 378 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHH
Confidence 333344455679999999999998884 58777666554 4578999999999999999854 566 55666
Q ss_pred HHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCc
Q 002772 651 CVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLW 729 (882)
Q Consensus 651 ~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 729 (882)
.+.++|.+.|+..+|..+++.. ...|+++..|..|..+|...|+..++..+ .+..|+-.|+|
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~ 441 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRL 441 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCH
Confidence 7889999999999999999876 45688887999999999999998766665 46778899999
Q ss_pred hHHHHHHHHHHhCC
Q 002772 730 DKAMDVRKKMKEMG 743 (882)
Q Consensus 730 ~~a~~~~~~m~~~g 743 (882)
++|.......+++.
T Consensus 442 ~~A~~~l~~A~~~~ 455 (484)
T COG4783 442 EQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998888764
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=5e-06 Score=55.06 Aligned_cols=35 Identities=34% Similarity=0.643 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCh
Q 002772 249 VSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDG 283 (882)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 283 (882)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=5.2e-06 Score=54.98 Aligned_cols=35 Identities=40% Similarity=0.746 Sum_probs=33.1
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCh
Q 002772 146 VSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSS 180 (882)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 180 (882)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 132
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00053 Score=66.88 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=108.0
Q ss_pred cCCHHHHHHHHhhCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHH
Q 002772 552 CGCLNFARRVFDLMP-VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGM 630 (882)
Q Consensus 552 ~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~ 630 (882)
.|++..+..+.++.+ +.+..+.+......-+.|++++|++-|+...+-+. ..| ...|+.-+.- .+.|+.+.|+
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG----yqp-llAYniALaH-y~~~qyasAL 198 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG----YQP-LLAYNLALAH-YSSRQYASAL 198 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC----CCc-hhHHHHHHHH-HhhhhHHHHH
Confidence 455566666666665 34445555444445566777777777777666430 222 3344444433 3446667777
Q ss_pred HHHHHhHHhcCCC-------------CC--------hhHHHHHHHHh-------hccCCHHHHHHHHHhCCC----CCCc
Q 002772 631 DLFYKMKDDYGIE-------------PS--------PDHYACVVDLL-------GRAGKVEDAYQLINMMPP----EFDK 678 (882)
Q Consensus 631 ~~~~~m~~~~~~~-------------p~--------~~~~~~li~~l-------~r~g~~~eA~~~~~~m~~----~p~~ 678 (882)
++..++.++ |++ || .-|-+.++.++ -+.|+++.|.+-+-.||. +-|.
T Consensus 199 k~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 199 KHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred HHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 766666664 543 11 22344555443 477899999999998862 2333
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 679 AGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 679 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
. ..-.+.-. -..++.-.+.+-.+-+++++|--+.++..+.-+|++..-++-|.+++.+
T Consensus 278 v-TLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 278 V-TLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred h-hhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3 33332211 2234555566667778888997778888888899999999988887763
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.97 E-value=7.8e-05 Score=79.32 Aligned_cols=123 Identities=13% Similarity=0.110 Sum_probs=100.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHh
Q 002772 613 FIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRI 691 (882)
Q Consensus 613 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~ 691 (882)
..+|+..+...+++++|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...|.+...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666777778888888888888765 244 4555777777788888888888765 4466666577777777899
Q ss_pred cCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 692 HQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 692 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
.++.+.|..+++++.++.|++...|..|+.+|.+.|+|++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888764
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.0013 Score=63.19 Aligned_cols=173 Identities=14% Similarity=0.100 Sum_probs=121.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHH---HHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHH
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVI---IMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFA 618 (882)
Q Consensus 542 ~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~ 618 (882)
|..+.-+...+|+.+.|...++++..+-.-++..+ ..-+-..|++++|+++|+..++.+ +-|.+++.-=+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd------pt~~v~~KRKlA 128 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD------PTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC------cchhHHHHHHHH
Confidence 33444455567778888877777652111222111 112345688999999999999876 445677776666
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC---c
Q 002772 619 ACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ---N 694 (882)
Q Consensus 619 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~---~ 694 (882)
..-..|+--+|++-+....+ .+..|.+.|.-+.++|...|.++.|.-.++++ -..|-++-....+...+...| |
T Consensus 129 ilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 66667777788888888887 56778999999999999999999999888887 356666645566666554444 8
Q ss_pred hhHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 002772 695 VEIGEIAAQNLFLLEPDVASHYVLLSNIYSS 725 (882)
Q Consensus 695 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 725 (882)
.+.+...+++++++.|.+. ..+..+|..
T Consensus 207 ~~~arkyy~~alkl~~~~~---ral~GI~lc 234 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNL---RALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHHHhChHhH---HHHHHHHHH
Confidence 8999999999999999654 344444443
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.4e-05 Score=52.50 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=32.2
Q ss_pred ceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 002772 145 QVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEP 178 (882)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 178 (882)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=1.9e-05 Score=51.84 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 002772 248 LVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKP 281 (882)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 281 (882)
+.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.87 E-value=0.0019 Score=75.23 Aligned_cols=232 Identities=10% Similarity=0.019 Sum_probs=112.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhhCC--CCC-eeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhcccccccccc
Q 002772 420 DRYVQNALMDMYSRMGRIEISKTIFDDME--VRD-TVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDET 496 (882)
Q Consensus 420 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 496 (882)
+...+..|+..|...+++++|.++.+... .|+ ...|-.+...+.+.++..++..+ .+..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------- 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------- 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh----------------
Confidence 34556667777777777777777766443 232 23333333355556665555544 3322
Q ss_pred ccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhH
Q 002772 497 VLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITW 573 (882)
Q Consensus 497 ~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~ 573 (882)
..+ ...++.....++..+.+.+ .+...+-.|..+|-+.|+.++|..+++++. ..|....
T Consensus 92 ---~~~-------------~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aL 153 (906)
T PRK14720 92 ---SFS-------------QNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIV 153 (906)
T ss_pred ---hcc-------------cccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHH
Confidence 111 1111111122222222211 123345556666666666666666666655 3355566
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 002772 574 NVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVV 653 (882)
Q Consensus 574 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 653 (882)
|.+...|+.. +.++|++++.+.+.. +...+++.++.++|.++.. ...-+...+-.+.
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~--------------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~ 210 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYR--------------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIE 210 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHH--------------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHH
Confidence 6666666666 666666666665542 2333455555555555553 1111222222111
Q ss_pred HHhhcc-CCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 002772 654 DLLGRA-GKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYS 724 (882)
Q Consensus 654 ~~l~r~-g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 724 (882)
...... | ...+ .. .|.-|-..|+...+.+.+..+++.+++.+|+|..+..-|+..|.
T Consensus 211 ~ki~~~~~-~~~~------------~~-~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHRE-FTRL------------VG-LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhc-cchh------------HH-HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 111111 1 1111 11 33444444555556666666666666666666666665555554
No 138
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.87 E-value=0.061 Score=57.59 Aligned_cols=211 Identities=13% Similarity=0.111 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCC----CCChhhHHHHHHHHHccCChhHHHHHH
Q 002772 521 AKGKEIHAYAIRNMLATDVVVGSALVDMYAKCG---CLNFARRVFDLMP----VRNVITWNVIIMAYGMHGEGQEVLELL 593 (882)
Q Consensus 521 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~ 593 (882)
+++..++...+..-...+..+|.++.+-=-..- ..+.....+++.. ..-..+|-..++.-.+..-...|-.+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455555655554433334444444432211111 1333334444433 222356777888777777789999999
Q ss_pred HHHHHcCCCCCcccC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC
Q 002772 594 KNMVAEGSRGGEVKP-NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 594 ~~m~~~g~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m 672 (882)
.+..+.+ ..+ +.....+++.-++ .++.+-|..+|+.-.++||-. ..--.+.++-|.+-++-..|..+|++.
T Consensus 390 ~kaR~~~-----r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 390 KKAREDK-----RTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERV 461 (656)
T ss_pred HHHhhcc-----CCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 9999988 677 4556666776655 488899999999988765443 344567889999999999999999987
Q ss_pred CCC---CC-chhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC----chHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 673 PPE---FD-KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA----SHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 673 ~~~---p~-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
... |+ ...+|..++.--...||++....+-++-...-|.+. ..-.++...|.-.+.+..-.+-++.|
T Consensus 462 l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 462 LTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 322 22 123999999999999999999999888777666221 12334556666666665544444433
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.86 E-value=0.00022 Score=65.03 Aligned_cols=115 Identities=11% Similarity=0.037 Sum_probs=89.9
Q ss_pred HHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHH
Q 002772 592 LLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLIN 670 (882)
Q Consensus 592 l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~ 670 (882)
+|++.+. ..|+. .....+...+...|++++|.+.|+.+... -+.+...+..+...+.+.|++++|...++
T Consensus 5 ~~~~~l~-------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 5 TLKDLLG-------LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hHHHHHc-------CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556655 34554 44556667778889999999999888763 23467788888888889999999998887
Q ss_pred hC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCch
Q 002772 671 MM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASH 715 (882)
Q Consensus 671 ~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 715 (882)
+. ...|+....|..+...+...|+.+.|...++++++++|++...
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 65 4567766688888899999999999999999999999987654
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.76 E-value=0.00061 Score=72.64 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHH
Q 002772 540 VVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAA 619 (882)
Q Consensus 540 ~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a 619 (882)
..-.+|+..+...++++.|..+|+++...+...+-.|+..+...++-.+|++++++.++.. +-|...+..-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~------p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN------PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 3445566777778999999999999986666666678888888899999999999999754 2244455555566
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhCCCCC
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMMPPEF 676 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p 676 (882)
|...++.+.|+++.+++.+ ..|+ ..+|..|+.+|.+.|++++|+..++.+|..|
T Consensus 244 Ll~k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHhcCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8899999999999999985 3565 6699999999999999999999999998544
No 141
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00037 Score=68.73 Aligned_cols=98 Identities=18% Similarity=0.122 Sum_probs=72.1
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHH
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIG 698 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a 698 (882)
.+.+++.+|+..|...++ +.|+ ..-|..=..+|.+.|.+++|++=.+.. .+.|.....|..|..++...|+.++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 456777777777777763 4554 334444466777777777777666543 56777777999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHH
Q 002772 699 EIAAQNLFLLEPDVASHYVLLSN 721 (882)
Q Consensus 699 ~~~~~~~~~l~p~~~~~~~~l~~ 721 (882)
+++|+++++++|++..+...|..
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHH
Confidence 99999999999998865544443
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.0085 Score=58.15 Aligned_cols=172 Identities=14% Similarity=0.104 Sum_probs=96.2
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC
Q 002772 529 YAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP 608 (882)
Q Consensus 529 ~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p 608 (882)
.+.......+......-...|.+.|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|.+-.
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~id-------- 167 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQID-------- 167 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc--------
Confidence 3333333333333333345677788888888887774322333222 233445566777888888887632
Q ss_pred ChhHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHH
Q 002772 609 NEVTFIALFAACSH----SGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWS 683 (882)
Q Consensus 609 d~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ 683 (882)
+..|.+-|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+.+..+....|+++||..++++. ...++.+.++.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 45566655555432 3457777777777775 34566666666666666666666666666654 22334343444
Q ss_pred HHHHHHHhcC-chhHHHHHHHHHhcCCCCC
Q 002772 684 SLLGACRIHQ-NVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 684 ~ll~a~~~~~-~~~~a~~~~~~~~~l~p~~ 712 (882)
.++..-...| +.+.-++...++....|..
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 4444333333 4455555555566566654
No 143
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=5.1e-05 Score=48.46 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 002772 249 VSWNTIVSSLSQNDKFLEAVMFLRQMALRGI 279 (882)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 279 (882)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.69 E-value=0.0014 Score=60.41 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=58.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE----VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSP-- 646 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-- 646 (882)
|..++..+ ..++...+.+.++++.... |+. .....+...+...|++++|...|+..... ...|+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~ 85 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKP 85 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHH
Confidence 34444554 3677788888888888754 443 23334456677788888888888888775 322221
Q ss_pred hHHHHHHHHhhccCCHHHHHHHHHhCC
Q 002772 647 DHYACVVDLLGRAGKVEDAYQLINMMP 673 (882)
Q Consensus 647 ~~~~~li~~l~r~g~~~eA~~~~~~m~ 673 (882)
...-.|..++...|++++|+..++..+
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~~ 112 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQIP 112 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 233445677777888888888876653
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=4.6e-05 Score=48.70 Aligned_cols=31 Identities=35% Similarity=0.717 Sum_probs=28.5
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 002772 146 VSWNSMIATLCRFGKWDLALEAFRMMLYSNV 176 (882)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 176 (882)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998874
No 146
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.00046 Score=73.98 Aligned_cols=83 Identities=14% Similarity=0.066 Sum_probs=39.5
Q ss_pred ccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 002772 658 RAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVR 736 (882)
Q Consensus 658 r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 736 (882)
+.|++++|++.+++. ...|+....|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++|...+
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~ 93 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAAL 93 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 334444444444332 2334444344444444555555555555555555555555555555555555555555555544
Q ss_pred HHHH
Q 002772 737 KKMK 740 (882)
Q Consensus 737 ~~m~ 740 (882)
++..
T Consensus 94 ~~al 97 (356)
T PLN03088 94 EKGA 97 (356)
T ss_pred HHHH
Confidence 4433
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.55 E-value=0.0005 Score=57.60 Aligned_cols=93 Identities=20% Similarity=0.211 Sum_probs=73.7
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcC
Q 002772 649 YACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ 727 (882)
Q Consensus 649 ~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 727 (882)
+..+...+.+.|++++|.+++++. ...|+...+|..+...+...++.+.|...++.++...|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666677778888888877764 3445554477788888888899999999999999999988888889999999999
Q ss_pred CchHHHHHHHHHHh
Q 002772 728 LWDKAMDVRKKMKE 741 (882)
Q Consensus 728 ~~~~a~~~~~~m~~ 741 (882)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999988876654
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.54 E-value=0.28 Score=56.03 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=66.8
Q ss_pred HHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHH
Q 002772 227 YAKLGRVDDAKTLFKSFED---RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGK 303 (882)
Q Consensus 227 y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 303 (882)
..+.|+.++|..+++.... .|..|..++-..|...++.++|..+|++.... -|+......+..++.+.+++.+-.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888887776543 36777888888888888888888888887654 566667777777777777766655
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHh
Q 002772 304 EIHAYALRNDILIDNSFVGSALVDMY 329 (882)
Q Consensus 304 ~~~~~~~~~g~~~~~~~~~~~Li~~y 329 (882)
++--++.+. ++...+.+=+.++.+
T Consensus 131 kaa~~LyK~--~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 131 KAALQLYKN--FPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHh--CCcccchHHHHHHHH
Confidence 544444443 455555544444443
No 149
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.49 E-value=0.12 Score=53.17 Aligned_cols=273 Identities=15% Similarity=0.129 Sum_probs=172.4
Q ss_pred cCChHHHHHHHhhCC---CCCeeeHHHHHH--HHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHh
Q 002772 434 MGRIEISKTIFDDME---VRDTVSWNTMIT--GYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLM 508 (882)
Q Consensus 434 ~g~~~~A~~~~~~m~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~ 508 (882)
.|+-..|+++-.+.. ..|....-.++. +-.-.|++++|.+-|+-|.. .-..-...+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~------------------dPEtRllGLR 158 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD------------------DPETRLLGLR 158 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc------------------ChHHHHHhHH
Confidence 455555555544332 223322222322 22336788888888888875 1111222333
Q ss_pred hHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhh--HHHHHHHHH
Q 002772 509 TVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-----VRNVIT--WNVIIMAYG 581 (882)
Q Consensus 509 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~--~~~li~~~~ 581 (882)
.|.-.--+.|+.+.|++.-...-..-. .-...+.++++..+..|+++.|+++.+.-. .+|+.- --.|+.+-+
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 444445567777777777666654432 234567788999999999999999998654 455422 122332221
Q ss_pred ---ccCChhHHHHHHHHHHHcCCCCCcccCChhH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh
Q 002772 582 ---MHGEGQEVLELLKNMVAEGSRGGEVKPNEVT-FIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLG 657 (882)
Q Consensus 582 ---~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~ 657 (882)
-.-+...|.+.-.+..+ +.||-+. -..-..++.+.|++.++-.+++.+-+. .|.+.....+++ .
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K-------L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~~--a 305 (531)
T COG3898 238 MSLLDADPASARDDALEANK-------LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYVR--A 305 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh-------cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHHH--h
Confidence 12346666666666665 6788654 334456789999999999999999754 677766654443 4
Q ss_pred ccCCHH--HHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHc-CCchHHHH
Q 002772 658 RAGKVE--DAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSA-QLWDKAMD 734 (882)
Q Consensus 658 r~g~~~--eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~ 734 (882)
|.|+.. .....-+--..+|++....-++..+-...|++..|...++.+...+|. .++|.+|.++-... |+-+++..
T Consensus 306 r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 306 RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHH
Confidence 555432 221111111347888767777788888999999999999999999996 57788999987766 88777766
Q ss_pred HHHH
Q 002772 735 VRKK 738 (882)
Q Consensus 735 ~~~~ 738 (882)
...+
T Consensus 385 wlAq 388 (531)
T COG3898 385 WLAQ 388 (531)
T ss_pred HHHH
Confidence 5553
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.43 E-value=0.0025 Score=58.69 Aligned_cols=125 Identities=16% Similarity=0.078 Sum_probs=91.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhCCCC-CCch---hhHHHHH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMMPPE-FDKA---GAWSSLL 686 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~-p~~~---~~~~~ll 686 (882)
.|..++.++ ..++...+...++.+.+.++-.| .....-.+...+...|++++|.+.++..... |+.. .++-.|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 37888899999999988643332 1334445668888999999999999987422 3321 1455677
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 687 GACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 687 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
..+...|+.+.|...++.. .-.+-.+..+.+++++|.+.|++++|...+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8889999999999999763 34445567888999999999999999998875
No 151
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.41 E-value=0.029 Score=65.78 Aligned_cols=175 Identities=12% Similarity=0.048 Sum_probs=110.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 002772 357 ITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGR 436 (882)
Q Consensus 357 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 436 (882)
+..+....++.-...++..| . ...-+...+..+..+|.+.|+.+++..+++.+++.. +.|..+.|-+...|+.. +
T Consensus 90 l~~~~~~~~~~~ve~~~~~i-~--~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKI-L--LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhcccccchhHHHHHHHHH-H--hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 33334444443333344444 2 133334466667777777788888888888888777 66778888888888888 8
Q ss_pred hHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcC
Q 002772 437 IEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGA 516 (882)
Q Consensus 437 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~ 516 (882)
+++|..++... +..|...+++.++.+++.++.. ..|+.+.+
T Consensus 165 L~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~-------------------~~~~d~d~--------- 205 (906)
T PRK14720 165 KEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH-------------------YNSDDFDF--------- 205 (906)
T ss_pred HHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh-------------------cCcccchH---------
Confidence 99998887764 3447777888899999999886 23333222
Q ss_pred cchHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHH
Q 002772 517 LSALAKGKEIHAYAIRN-MLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYG 581 (882)
Q Consensus 517 ~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~ 581 (882)
-.++.+.+... |..--..++-.|-..|-+..+++++..+|+.+. +.|.....-++..|.
T Consensus 206 ------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 206 ------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 11222222221 333334455566677777888888888888776 345555666666665
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.40 E-value=0.0016 Score=57.54 Aligned_cols=61 Identities=11% Similarity=-0.084 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCC---CchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 682 WSSLLGACRIHQNVEIGEIAAQNLFLLEPDV---ASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 682 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+..+..++...|+.+.|...++.++...|++ +.++..++.+|...|++++|.+.++++.+.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3344444555555555555555555554443 234455555555555555555555554443
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.40 E-value=0.00044 Score=53.42 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=47.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 685 LLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 685 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+...+...|+++.|+..++.+++.+|+++.++..++.++...|++++|..++++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888888888888888888888888888877553
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.39 E-value=0.0015 Score=70.03 Aligned_cols=107 Identities=15% Similarity=0.055 Sum_probs=80.7
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchh
Q 002772 618 AACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVE 696 (882)
Q Consensus 618 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~ 696 (882)
..+...|++++|++.|+++++. -+-+...|..+..+|.+.|++++|+..+++. ...|+...+|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3445567777777777777753 2224566777777778888888888877765 456777768888888999999999
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHc
Q 002772 697 IGEIAAQNLFLLEPDVASHYVLLSNIYSSA 726 (882)
Q Consensus 697 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 726 (882)
.|...++++++++|+++.....+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988887776664443
No 155
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.013 Score=56.93 Aligned_cols=119 Identities=14% Similarity=0.159 Sum_probs=76.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHH
Q 002772 546 VDMYAKCGCLNFARRVFDLMPVR-NVITWNVIIMAYGM----HGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAAC 620 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~ 620 (882)
+..+.|..+++-|.+.++.|.+- +..+.+.|..++.+ .++..+|.-+|++|-++ ..|+..+.+....++
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------~~~T~~llnG~Av~~ 217 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------TPPTPLLLNGQAVCH 217 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------cCCChHHHccHHHHH
Confidence 34455667777777777777743 34555556555543 34577788888888765 467777888888888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHH-HHHHhC
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAY-QLINMM 672 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~-~~~~~m 672 (882)
...|++++|..+++....+ -.-++++...+|-+-.-.|+-.++. +.+.+.
T Consensus 218 l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 8888888888888887764 2334555655555555555554443 344443
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.38 E-value=0.003 Score=60.13 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=77.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhH
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN--EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDH 648 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~ 648 (882)
.+..+...|...|++++|+..|++.+... ..|+ ...+..+...+.+.|++++|...+++..+. .| +...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~ 108 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSA 108 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHH
Confidence 35556666777777777777777777643 2221 245666666677777777777777777653 23 3445
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCC
Q 002772 649 YACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQL 728 (882)
Q Consensus 649 ~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 728 (882)
+..+..++...|+...|..-.... ....+.|...++++++++|++ |..+.+.+...|+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A-------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEA-------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHH-------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 555556666666555443222210 112567888888999999977 5555555555554
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.37 E-value=0.00037 Score=54.63 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcC-CchHHHHHHHHHHh
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ-LWDKAMDVRKKMKE 741 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 741 (882)
+|..++..+...|+.+.|+..++++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999 79999998887654
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.00085 Score=66.29 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=79.2
Q ss_pred HHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchH
Q 002772 653 VDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDK 731 (882)
Q Consensus 653 i~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 731 (882)
.+-+.+.+++++|+..+.+. ...|.++..+..-..+|.+.|..+.|.+.++.++.++|..+.+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 35567889999999999875 67888875778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 002772 732 AMDVRKKMKE 741 (882)
Q Consensus 732 a~~~~~~m~~ 741 (882)
|.+.+++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999885544
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.35 E-value=0.00017 Score=59.25 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
.|-.+..++...|+.+.|..++++ .+.+|.++.....++.+|.+.|+|++|.+++++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 566667777777777777777777 666776767777889999999999999988774
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.32 E-value=0.003 Score=55.82 Aligned_cols=103 Identities=13% Similarity=0.050 Sum_probs=58.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhCC-CCCC---chhhHHHHHHH
Q 002772 614 IALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMMP-PEFD---KAGAWSSLLGA 688 (882)
Q Consensus 614 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m~-~~p~---~~~~~~~ll~a 688 (882)
..+...+...|++++|.+.|+.+...+.-.| ....+..+..++.+.|++++|.+.++.+. ..|+ ...+|..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3334444445555555555555554311111 12334445555666666666666555441 1222 22367777777
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCchH
Q 002772 689 CRIHQNVEIGEIAAQNLFLLEPDVASHY 716 (882)
Q Consensus 689 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 716 (882)
+...|+.+.|...++++++..|+++...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888765543
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.31 E-value=0.0004 Score=53.69 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=51.3
Q ss_pred HHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 002772 652 VVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA 713 (882)
Q Consensus 652 li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 713 (882)
+...+.+.|++++|.+.+++. ...|+...+|..+..++...|+.+.|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677788888888888876 45688888999999999999999999999999999999874
No 162
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.30 E-value=0.00013 Score=47.35 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=30.6
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHcCCchHHH
Q 002772 702 AQNLFLLEPDVASHYVLLSNIYSSAQLWDKAM 733 (882)
Q Consensus 702 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 733 (882)
++++++++|+++.+|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.29 E-value=0.034 Score=60.39 Aligned_cols=137 Identities=16% Similarity=0.199 Sum_probs=84.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCC
Q 002772 546 VDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGM 625 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~ 625 (882)
..|+...|+.+.|..+. +.+|-.+-++++-+++- +.+..+...+..-+.+...
T Consensus 710 AEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld---------~~ere~l~~~a~ylk~l~~ 762 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLD---------KAEREPLLLCATYLKKLDS 762 (1081)
T ss_pred HHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcc---------hhhhhHHHHHHHHHhhccc
Confidence 45555666666665443 34455555555555442 2334455555555666677
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCC-CCCchhhHHHHHHHHHhcCchhHHHHHHHH
Q 002772 626 VSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPP-EFDKAGAWSSLLGACRIHQNVEIGEIAAQN 704 (882)
Q Consensus 626 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~-~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~ 704 (882)
+.-|.++|.+|-. ...++++....++++||..+-++.|. .|+ ++.-...-.....++++|.++
T Consensus 763 ~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkA--- 826 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKA--- 826 (1081)
T ss_pred cchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHH---
Confidence 7888889988854 35688999999999999999998863 333 222333333444455555544
Q ss_pred HhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 705 LFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 705 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
|.++|+-.||.++++++....
T Consensus 827 ------------------fhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 827 ------------------FHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred ------------------HHHhcchHHHHHHHHHhhhhh
Confidence 456667677777777665443
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0022 Score=63.94 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=91.8
Q ss_pred CCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC---chhHHHHHHHHHhcCCCCCCchHHH
Q 002772 643 EPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ---NVEIGEIAAQNLFLLEPDVASHYVL 718 (882)
Q Consensus 643 ~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~---~~~~a~~~~~~~~~l~p~~~~~~~~ 718 (882)
+-|.+.|-.|...|.+.|++.+|..-+.+. ...|+++.+|..+..++.... ....+..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447889999999999999999999988765 578888878888888765443 5689999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCCccCC
Q 002772 719 LSNIYSSAQLWDKAMDVRKKMKEMGVRKEP 748 (882)
Q Consensus 719 l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~ 748 (882)
|+-.+...|++.+|...++.|.+..-.-.|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999887654333
No 165
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0087 Score=57.64 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=83.3
Q ss_pred CCHHHHHHHHhhCCC--CCh-------hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHH-HHhc
Q 002772 553 GCLNFARRVFDLMPV--RNV-------ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFA-ACSH 622 (882)
Q Consensus 553 g~~~~A~~~~~~m~~--~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~-a~~~ 622 (882)
.+.++..+++.++.. +.- ..|..++-+....|+.+.|...++++.. --|.+.-...+=. -+..
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~-------~fp~S~RV~~lkam~lEa 98 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD-------RFPGSKRVGKLKAMLLEA 98 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------hCCCChhHHHHHHHHHHH
Confidence 345555555555542 222 1122334444555556666666665554 3444332222211 1234
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHH
Q 002772 623 SGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIA 701 (882)
Q Consensus 623 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~ 701 (882)
.|.+++|.++++...++ . +-|..+|--=+-++-..|+--+|++-+..- ..-+++..+|.-|...|...|+++.|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 45666666666666653 1 223444444444444444444554433322 11233333666666666666666666666
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHcCC
Q 002772 702 AQNLFLLEPDVASHYVLLSNIYSSAQL 728 (882)
Q Consensus 702 ~~~~~~l~p~~~~~~~~l~~~y~~~g~ 728 (882)
+|+++=+.|.++..+..|+.++.-.|-
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 666666666666666666666555553
No 166
>PRK15331 chaperone protein SicA; Provisional
Probab=97.25 E-value=0.0088 Score=54.36 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=77.7
Q ss_pred HHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchH
Q 002772 653 VDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDK 731 (882)
Q Consensus 653 i~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 731 (882)
..-+-..|++++|..+|.-. ...|.+...|..|...|...++.+.|...+-.+..+.++||..+...+..|...|+.++
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33445689999999998865 24566666999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 002772 732 AMDVRKKMKE 741 (882)
Q Consensus 732 a~~~~~~m~~ 741 (882)
|...++...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999987655
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.25 E-value=0.0071 Score=67.78 Aligned_cols=141 Identities=13% Similarity=0.063 Sum_probs=71.9
Q ss_pred CCCChhhHHHHHHHHHc--cC---ChhHHHHHHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 002772 566 PVRNVITWNVIIMAYGM--HG---EGQEVLELLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSEGMDLFYKMKDD 639 (882)
Q Consensus 566 ~~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 639 (882)
...|...|...+.|... .+ ...+|.++|++.++. .||- ..+..+..++....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l-------dP~~a~a~A~la~~~~~~~--------------- 390 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS-------EPDFTYAQAEKALADIVRH--------------- 390 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHHH---------------
Confidence 35677888888877543 22 367899999999994 5874 33443322221110
Q ss_pred cCCCCChhHHHHHHHHhhccCCHHHHHHHHHh---CCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchH
Q 002772 640 YGIEPSPDHYACVVDLLGRAGKVEDAYQLINM---MPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHY 716 (882)
Q Consensus 640 ~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~---m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 716 (882)
+..|.. .+++..+.+..++ ++..|..+.++.++.-.....|+.+.|...++++++++| +...|
T Consensus 391 -~~~~~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~ 456 (517)
T PRK10153 391 -SQQPLD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNY 456 (517)
T ss_pred -hcCCcc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHH
Confidence 111100 0111122222211 111222222455554444455666666666666666666 34556
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 717 VLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 717 ~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+.++.+|...|+.++|.+.+++....
T Consensus 457 ~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 457 VLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666666666554433
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.2 Score=52.38 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHH
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAAC 620 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~ 620 (882)
+.+.-|.-+...|+...|.++..+..-||-.-|...+.+|+..|++++-.++... . -.++-|..++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k-------KsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K-------KSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C-------CCCCChHHHHHHH
Confidence 3344456667789999999999998889999999999999999999877765432 2 2347888899999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m 672 (882)
...|...+|..+...+. +.--+.+|.++|.+.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999998887632 245678889999999887765553
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.16 E-value=0.0048 Score=63.77 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChhHH
Q 002772 571 ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAA-CSHSGMVSEGMDLFYKMKDDYGIEPSPDHY 649 (882)
Q Consensus 571 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 649 (882)
.+|-.++....+.+..+.|-.+|++.++.+ .-+...|...... +...++.+.|..+|+...+.+ ..+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHH
Confidence 357777777777777888888888887543 2233344444333 333566777999999988753 4566778
Q ss_pred HHHHHHhhccCCHHHHHHHHHhCC----CCC-CchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 002772 650 ACVVDLLGRAGKVEDAYQLINMMP----PEF-DKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 650 ~~li~~l~r~g~~~eA~~~~~~m~----~~p-~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
...++.+.+.|+.+.|..+|++.- .+. ... +|...+..-..+|+++....+.+++.++-|++..
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~-iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISSLPKEKQSKK-IWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHH-HHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 888899999999999999998752 122 223 9999999999999999999999999999887544
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.15 E-value=0.0025 Score=60.46 Aligned_cols=93 Identities=10% Similarity=-0.139 Sum_probs=72.8
Q ss_pred hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCC---chhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHH
Q 002772 646 PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFD---KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSN 721 (882)
Q Consensus 646 ~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 721 (882)
...|..++..+...|++++|...+++. ...|+ ...+|..+...+...|+.+.|...++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566677777788888888887765 22222 22378899999999999999999999999999999999999999
Q ss_pred HHH-------HcCCchHHHHHHHH
Q 002772 722 IYS-------SAQLWDKAMDVRKK 738 (882)
Q Consensus 722 ~y~-------~~g~~~~a~~~~~~ 738 (882)
+|. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 998 88888866655554
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0027 Score=65.20 Aligned_cols=89 Identities=8% Similarity=0.057 Sum_probs=66.6
Q ss_pred HHhhccCCHHHHHHHHHhC-CCCCCchh----hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCC
Q 002772 654 DLLGRAGKVEDAYQLINMM-PPEFDKAG----AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQL 728 (882)
Q Consensus 654 ~~l~r~g~~~eA~~~~~~m-~~~p~~~~----~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 728 (882)
+-..+.|++.+|.+.+.+. .+.|++.. .|.....+...+|+.++|....+.+++++|.....|..-++.|...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3455778888888877654 45555442 344445566778888888888888889988888888888888888899
Q ss_pred chHHHHHHHHHHhC
Q 002772 729 WDKAMDVRKKMKEM 742 (882)
Q Consensus 729 ~~~a~~~~~~m~~~ 742 (882)
|++|.+-+++..+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 99988888776554
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.13 E-value=0.0036 Score=59.60 Aligned_cols=81 Identities=12% Similarity=-0.041 Sum_probs=56.8
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhCC-CCC---CchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 002772 648 HYACVVDLLGRAGKVEDAYQLINMMP-PEF---DKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIY 723 (882)
Q Consensus 648 ~~~~li~~l~r~g~~~eA~~~~~~m~-~~p---~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 723 (882)
.|..+...+.+.|++++|...+++.. ..| +...+|..+...+...|+.+.|...++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34445555555566666666555431 111 12237788888888888888899999999999998888888888888
Q ss_pred HHcCC
Q 002772 724 SSAQL 728 (882)
Q Consensus 724 ~~~g~ 728 (882)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88776
No 173
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.13 E-value=0.8 Score=52.55 Aligned_cols=212 Identities=14% Similarity=0.169 Sum_probs=92.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHH--hcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCH
Q 002772 53 ARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAV--AGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDM 130 (882)
Q Consensus 53 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 130 (882)
...+++..|+.....+.+.. |+. .|..++.++ .+.|+.++|..+++.....+ +.|..+...+...|...+ ..
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~-~~ 93 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLG-KL 93 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHh-hh
Confidence 34455555555555544431 221 233444443 34555555555555433322 245555555555566555 66
Q ss_pred HHHHHHHhccCC--CCceeHHHHHHHHHhcCCchH----HHHHHHHHHHCCCCCChhhHHHHHHHhccCCcc-------c
Q 002772 131 WDVYKVFDRITE--KDQVSWNSMIATLCRFGKWDL----ALEAFRMMLYSNVEPSSFTLVSVALACSNLSRR-------D 197 (882)
Q Consensus 131 ~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~ 197 (882)
++|..+++...+ |+...-..+.-+|++-+++.+ |+++|.. +.-+++.|=+++......... -
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccch
Confidence 666666555443 332223333344444444432 3333331 122334443433332222110 1
Q ss_pred chHHHHHHHHhhhhcC-----CCchhHHHHHHHHHHhcCChhHHHHHHhc-C----CCCCcccHHHHHHHHHcCCChHHH
Q 002772 198 GLRLGRQVHGNSLRVG-----EWNTFIMNALMAMYAKLGRVDDAKTLFKS-F----EDRDLVSWNTIVSSLSQNDKFLEA 267 (882)
Q Consensus 198 ~~~~~~~~~~~~~~~g-----~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-m----~~~~~~~~~~li~~~~~~g~~~~A 267 (882)
-+..+....+.+++.+ .....+|- ......|+.++|..++.. . ..-+...-|--+.-+...+++.+.
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl---~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYL---LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHH---HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 1223344444444332 11122222 223345667777776632 1 112233333444555556666666
Q ss_pred HHHHHHHHHCC
Q 002772 268 VMFLRQMALRG 278 (882)
Q Consensus 268 ~~l~~~m~~~g 278 (882)
.++-.++...|
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 66666665554
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.11 E-value=0.016 Score=54.92 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Ch
Q 002772 570 VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN--EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SP 646 (882)
Q Consensus 570 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~ 646 (882)
...|..+...+...|++++|+..|++.+... ..|. ..++..+...+.+.|+.++|+..++..... .| ..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~ 106 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLP 106 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcH
Confidence 4556677777778888888888888887743 2221 246777777888888888888888887753 23 23
Q ss_pred hHHHHHHHHhh-------ccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 647 DHYACVVDLLG-------RAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 647 ~~~~~li~~l~-------r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
..+..+...+. +.|++++|... .+.|...++++++.+|++
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~--------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAW--------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHH--------------------------HHHHHHHHHHHHHhCccc
Confidence 44455555554 33333333322 345666777888888854
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.09 E-value=0.00037 Score=54.44 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=12.0
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
++..+..+|...|+++.|+..+++++..+|++
T Consensus 27 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 27 ARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 33333333333333333333333333333333
No 176
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.08 E-value=0.0043 Score=51.71 Aligned_cols=91 Identities=20% Similarity=0.123 Sum_probs=46.8
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchh
Q 002772 618 AACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVE 696 (882)
Q Consensus 618 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~ 696 (882)
..+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++.. ...|.....|..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 3334444555555555444432 1112233444445555555555555555442 223333336666666666777777
Q ss_pred HHHHHHHHHhcCCC
Q 002772 697 IGEIAAQNLFLLEP 710 (882)
Q Consensus 697 ~a~~~~~~~~~l~p 710 (882)
.|...++++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 77777777766665
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.99 E-value=0.047 Score=56.67 Aligned_cols=155 Identities=11% Similarity=0.132 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHcc-CChhHHHHHHHHHHHcCCCCCcccCC--hhHHHHHHH
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMH-GEGQEVLELLKNMVAEGSRGGEVKPN--EVTFIALFA 618 (882)
Q Consensus 542 ~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~~~~~~pd--~~t~~~ll~ 618 (882)
+...++.|.+.|++..|-+.+.. +...|... |++++|++.|++..+.-... -.+. ...+..+..
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHH
Confidence 34445667777777777665544 45667676 78888888888876642000 0111 234556667
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-----Ch-hHHHHHHHHhhccCCHHHHHHHHHhCC-CCCC-----chhhHHHHH
Q 002772 619 ACSHSGMVSEGMDLFYKMKDDYGIEP-----SP-DHYACVVDLLGRAGKVEDAYQLINMMP-PEFD-----KAGAWSSLL 686 (882)
Q Consensus 619 a~~~~g~~~~a~~~~~~m~~~~~~~p-----~~-~~~~~li~~l~r~g~~~eA~~~~~~m~-~~p~-----~~~~~~~ll 686 (882)
.+...|++++|.++|++.... .+.. +. ..|-..+-++...|+...|.+.+++.. ..|. .......|+
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 778888888888888887764 2221 11 122333445555677878877777642 2221 122555666
Q ss_pred HHHHhcC--chhHHHHHHHHHhcCCC
Q 002772 687 GACRIHQ--NVEIGEIAAQNLFLLEP 710 (882)
Q Consensus 687 ~a~~~~~--~~~~a~~~~~~~~~l~p 710 (882)
.+|.... .++.+..-++.+..++|
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHhCCHHHHHHHHHHHcccCccHH
Confidence 6665433 33444444444444443
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.96 E-value=0.0019 Score=51.19 Aligned_cols=57 Identities=11% Similarity=0.126 Sum_probs=47.8
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 687 GACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 687 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
..+...++.+.|..+++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456778888888888888888888888888888889999999998888888776543
No 179
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.94 E-value=0.0012 Score=51.67 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=53.2
Q ss_pred hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC-chhHHHHHHHHHhcCCC
Q 002772 646 PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ-NVEIGEIAAQNLFLLEP 710 (882)
Q Consensus 646 ~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~-~~~~a~~~~~~~~~l~p 710 (882)
...|..+...+.+.|++++|+..|++. ...|+...+|..+..++...| +.+.|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456667777777777777777777654 457888779999999999999 79999999999999988
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.90 E-value=0.072 Score=55.30 Aligned_cols=131 Identities=16% Similarity=0.172 Sum_probs=84.0
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcc-CCHHHHHHH
Q 002772 554 CLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHS-GMVSEGMDL 632 (882)
Q Consensus 554 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~-g~~~~a~~~ 632 (882)
++++|...+++ .+..|...|++..|-.++.++- ..|... |++++|.+.
T Consensus 89 ~~~~Ai~~~~~-----------A~~~y~~~G~~~~aA~~~~~lA--------------------~~ye~~~~d~e~Ai~~ 137 (282)
T PF14938_consen 89 DPDEAIECYEK-----------AIEIYREAGRFSQAAKCLKELA--------------------EIYEEQLGDYEKAIEY 137 (282)
T ss_dssp THHHHHHHHHH-----------HHHHHHHCT-HHHHHHHHHHHH--------------------HHHCCTT--HHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHhcCcHHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHH
Confidence 55555555543 4566777777777766665543 455566 889999999
Q ss_pred HHHhHHhcCCCCC----hhHHHHHHHHhhccCCHHHHHHHHHhCC---C-CC----CchhhHHHHHHHHHhcCchhHHHH
Q 002772 633 FYKMKDDYGIEPS----PDHYACVVDLLGRAGKVEDAYQLINMMP---P-EF----DKAGAWSSLLGACRIHQNVEIGEI 700 (882)
Q Consensus 633 ~~~m~~~~~~~p~----~~~~~~li~~l~r~g~~~eA~~~~~~m~---~-~p----~~~~~~~~ll~a~~~~~~~~~a~~ 700 (882)
|++..+.|..... ..++..+..++.+.|++++|.+++++.. . .+ +....+-..+-.+...||...|..
T Consensus 138 Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 138 YQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998875543333 3456778889999999999999998752 1 11 111122222334556689999999
Q ss_pred HHHHHhcCCCCCCch
Q 002772 701 AAQNLFLLEPDVASH 715 (882)
Q Consensus 701 ~~~~~~~l~p~~~~~ 715 (882)
.+++..+.+|....+
T Consensus 218 ~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 218 ALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHGTTSTTSTTS
T ss_pred HHHHHHhhCCCCCCc
Confidence 999999999966544
No 181
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=1.1 Score=50.30 Aligned_cols=342 Identities=13% Similarity=0.037 Sum_probs=181.5
Q ss_pred CCCCCChhhHh-----hHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCC---hHHHHHHHhccCC-
Q 002772 277 RGIKPDGVSIA-----SVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCRE---VECGRRVFDFISD- 347 (882)
Q Consensus 277 ~g~~pd~~t~~-----~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~---~~~A~~~f~~m~~- 347 (882)
-|+..+..-|. .+++-+...+.+..|.++-..+...- ... ..++.....-+.+..+ -+-+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-SQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-ccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 35555544443 33445555666666666655552221 111 5666777776666532 3334445555555
Q ss_pred -CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcC----CCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchH
Q 002772 348 -KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAG----LWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRY 422 (882)
Q Consensus 348 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 422 (882)
.+-++|..+.+-....|+.+-|..+++.= ...+ +-.+..-+...+.-+...|+.+...+++-++.+.-. ..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E-~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~---~s 579 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELE-PRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN---RS 579 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcC-CCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH---HH
Confidence 45678888888888888888888776432 1111 011223344556666677777776666655543210 00
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC-CCeeeHHHHHHHHHhcCCHHHHHHHHH--HHhhhhhhhhccccccccccccC
Q 002772 423 VQNALMDMYSRMGRIEISKTIFDDMEV-RDTVSWNTMITGYTICGQHGDALMLLR--EMQNMEEEKNRNNVYDLDETVLR 499 (882)
Q Consensus 423 ~~~~Li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~~~~~~~~~~~~~~~~~~~~ 499 (882)
.+ +....+...|..+|.+... .|.. .+-..|- .++..+++..|. ..... + +..+
T Consensus 580 ~l------~~~l~~~p~a~~lY~~~~r~~~~~---~l~d~y~-q~dn~~~~a~~~~q~~~~~--~-----------~~~~ 636 (829)
T KOG2280|consen 580 SL------FMTLRNQPLALSLYRQFMRHQDRA---TLYDFYN-QDDNHQALASFHLQASYAA--E-----------TIEG 636 (829)
T ss_pred HH------HHHHHhchhhhHHHHHHHHhhchh---hhhhhhh-cccchhhhhhhhhhhhhhh--h-----------hhcc
Confidence 00 0111122223333332211 1100 0111111 122122221111 10000 0 0002
Q ss_pred CCCCcchHhhHHHhhcCcchHHHHH----------HHHHHHH-HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 002772 500 PKPNSITLMTVLPGCGALSALAKGK----------EIHAYAI-RNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVR 568 (882)
Q Consensus 500 ~~p~~~t~~~ll~a~~~~~~~~~a~----------~i~~~~~-~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~ 568 (882)
..|+. ...-++|++......+. ++...+. +.|....-.+.+--+.-+...|+..+|.++-.+..-|
T Consensus 637 r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fkip 713 (829)
T KOG2280|consen 637 RIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIP 713 (829)
T ss_pred cchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCc
Confidence 23332 23334444433321111 1111111 2232222333344455567789999999999999999
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH
Q 002772 569 NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDH 648 (882)
Q Consensus 569 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 648 (882)
|-..|.--+.+++..+++++-+++-+.+ ++ ++-|.-...+|.+.|+.+||.+++.+... .
T Consensus 714 dKr~~wLk~~aLa~~~kweeLekfAksk----------ks-PIGy~PFVe~c~~~~n~~EA~KYiprv~~---l------ 773 (829)
T KOG2280|consen 714 DKRLWWLKLTALADIKKWEELEKFAKSK----------KS-PIGYLPFVEACLKQGNKDEAKKYIPRVGG---L------ 773 (829)
T ss_pred chhhHHHHHHHHHhhhhHHHHHHHHhcc----------CC-CCCchhHHHHHHhcccHHHHhhhhhccCC---h------
Confidence 9999998899999999998777665543 22 56778888999999999999998866532 1
Q ss_pred HHHHHHHhhccCCHHHHHHHHHh
Q 002772 649 YACVVDLLGRAGKVEDAYQLINM 671 (882)
Q Consensus 649 ~~~li~~l~r~g~~~eA~~~~~~ 671 (882)
.-.+.+|.+.|++.+|.++--+
T Consensus 774 -~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 774 -QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred -HHHHHHHHHhccHHHHHHHHHH
Confidence 1568899999999998876544
No 182
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.87 E-value=0.54 Score=49.24 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCc
Q 002772 425 NALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNS 504 (882)
Q Consensus 425 ~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~ 504 (882)
+.-|.-+...|+...|.++-.+..-||-.-|-..|.+|+..+++++-.+.... +-.+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----------------------kKsP 237 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----------------------KKSP 237 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----------------------CCCC
Confidence 34455566778888888888888888888888888888888888765543211 1234
Q ss_pred chHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 002772 505 ITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDL 564 (882)
Q Consensus 505 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 564 (882)
+.|-.++.+|.+.|...+|..+... ..+..-+.+|.++|++.+|.+.--+
T Consensus 238 IGyepFv~~~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 238 IGYEPFVEACLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CChHHHHHHHHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777888888888887777766654 1225567888888888888666433
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.85 E-value=0.0012 Score=51.52 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=47.6
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 690 RIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 690 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
...|+++.|...++++++.+|+++.++..|+.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999866553
No 184
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.80 E-value=0.004 Score=66.00 Aligned_cols=69 Identities=13% Similarity=-0.023 Sum_probs=60.3
Q ss_pred CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 674 PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASH---YVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 674 ~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
.+|+....|..+..++...|++++|...++++++++|++..+ |..++.+|...|+.++|...+++..+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467777789999999999999999999999999999998854 889999999999999999988887765
No 185
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.80 E-value=0.045 Score=49.65 Aligned_cols=93 Identities=11% Similarity=-0.030 Sum_probs=54.0
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh
Q 002772 569 NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD 647 (882)
Q Consensus 569 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 647 (882)
+....-.+..-+.+.|++++|..+|+-.... .|. ..-|..|..+|...|++++|+..|...... . +-++.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~ 104 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQ 104 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCch
Confidence 3334444555566777777777777777763 354 344556666666677777777777776642 1 12344
Q ss_pred HHHHHHHHhhccCCHHHHHHHHH
Q 002772 648 HYACVVDLLGRAGKVEDAYQLIN 670 (882)
Q Consensus 648 ~~~~li~~l~r~g~~~eA~~~~~ 670 (882)
.+-.+..++...|+.++|.+-|+
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 44445555555555555555444
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.75 E-value=0.021 Score=61.37 Aligned_cols=120 Identities=11% Similarity=0.060 Sum_probs=101.0
Q ss_pred CCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhh
Q 002772 499 RPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRN--MLATDVVVGSALVDMYAKCGCLNFARRVFDLMP----VRNVIT 572 (882)
Q Consensus 499 ~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~~~~~ 572 (882)
+.+.+.+.+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..++..=. -||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 56677888999999999999999999988887764 333344556799999999999999999998644 689999
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcc
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHS 623 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~ 623 (882)
+|.||..+.+.|++..|.++..+|...+ ...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe-----~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQE-----EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhh-----ccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999888 677778877777776654
No 187
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.73 E-value=0.019 Score=48.15 Aligned_cols=79 Identities=10% Similarity=0.184 Sum_probs=67.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCcc-cCChhHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCC
Q 002772 574 NVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEV-KPNEVTFIALFAACSHSG--------MVSEGMDLFYKMKDDYGIEP 644 (882)
Q Consensus 574 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p 644 (882)
...|..+...|++.....+|+.+++.| + .|+..+|+.++.+..+.. ++-+.+.+|+.|... +++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~-----i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP 102 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNG-----ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKP 102 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcC-----CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCC
Confidence 345666667799999999999999999 8 999999999999876643 355678899999987 9999
Q ss_pred ChhHHHHHHHHhhc
Q 002772 645 SPDHYACVVDLLGR 658 (882)
Q Consensus 645 ~~~~~~~li~~l~r 658 (882)
+.++|+.++..+.+
T Consensus 103 ~~etYnivl~~Llk 116 (120)
T PF08579_consen 103 NDETYNIVLGSLLK 116 (120)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988764
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.71 E-value=0.0056 Score=62.68 Aligned_cols=263 Identities=11% Similarity=-0.007 Sum_probs=164.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHH----hcCC
Q 002772 461 GYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIR----NMLA 536 (882)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~ 536 (882)
-+++.|+....+.+|+..++-|.+ .+..=+..|+-+-+||.-++++++|.++|..=+- .|-+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe--------------Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdk 91 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE--------------DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDK 91 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch--------------HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcch
Confidence 467888888999999988872222 2222334566667788888999999999864321 1111
Q ss_pred -CchhHHHHHHHHHHhcCCHHHHHHHHhhCC-------C--CChhhHHHHHHHHHccCC--------------------h
Q 002772 537 -TDVVVGSALVDMYAKCGCLNFARRVFDLMP-------V--RNVITWNVIIMAYGMHGE--------------------G 586 (882)
Q Consensus 537 -~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-------~--~~~~~~~~li~~~~~~g~--------------------~ 586 (882)
-.......|.+.+--.|.+++|.-.-.+-. . -....+-.+...|...|+ .
T Consensus 92 lGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al 171 (639)
T KOG1130|consen 92 LGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSAL 171 (639)
T ss_pred hccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHH
Confidence 012223334445555677777665432221 0 112334445555544332 2
Q ss_pred hHHHHHHHHHHH----cCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhH---HhcCCCC-ChhHHHHHHHHhhc
Q 002772 587 QEVLELLKNMVA----EGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMK---DDYGIEP-SPDHYACVVDLLGR 658 (882)
Q Consensus 587 ~~A~~l~~~m~~----~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p-~~~~~~~li~~l~r 658 (882)
+.|.++|.+=++ .|. --.....|..|.+.|--.|++++|+...+.=. +.||-+. ....++.+.+++.-
T Consensus 172 ~~Av~fy~eNL~l~~~lgD----r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGD----RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHhhh----HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 334555544322 110 00112356777777777899999998766432 3345443 35578889999999
Q ss_pred cCCHHHHHHHHHhC-------CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcC----C--CCCCchHHHHHHHHHH
Q 002772 659 AGKVEDAYQLINMM-------PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLL----E--PDVASHYVLLSNIYSS 725 (882)
Q Consensus 659 ~g~~~eA~~~~~~m-------~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l----~--p~~~~~~~~l~~~y~~ 725 (882)
.|+++.|.+.++.. ..+.-.+....+|.++|....+++.|+....+-+.+ + -....++..|++.|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999988753 222223336778999999999999999988875543 2 2345678899999999
Q ss_pred cCCchHHHHHHHHHHh
Q 002772 726 AQLWDKAMDVRKKMKE 741 (882)
Q Consensus 726 ~g~~~~a~~~~~~m~~ 741 (882)
.|.-++|+...++-.+
T Consensus 328 lg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLR 343 (639)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999887766543
No 189
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.69 E-value=0.02 Score=59.19 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHH----HHhcCCHHHHHHHHHHHhhhhhhhhccccccccccc
Q 002772 422 YVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITG----YTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETV 497 (882)
Q Consensus 422 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 497 (882)
.+|..+++..-+.+.++.|+.+|.+.......+|...+.. |...++.+.|.++|+..++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk----------------- 64 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLK----------------- 64 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----------------
Confidence 3556666666666667777777776664444444333321 1123444445666555554
Q ss_pred cCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC----hh
Q 002772 498 LRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VRN----VI 571 (882)
Q Consensus 498 ~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~----~~ 571 (882)
. +..+...|...++.+.+.|+.+.|..+|++.. -+. ..
T Consensus 65 -----------------------------------~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~ 108 (280)
T PF05843_consen 65 -----------------------------------K-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKK 108 (280)
T ss_dssp -----------------------------------H-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHH
T ss_pred -----------------------------------H-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHH
Confidence 2 34567788888899999999999999999876 222 34
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHH
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFA 618 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~ 618 (882)
.|...+.-=.+.|+.+.+.++.+++.+. -|+..++..+++
T Consensus 109 iw~~~i~fE~~~Gdl~~v~~v~~R~~~~-------~~~~~~~~~f~~ 148 (280)
T PF05843_consen 109 IWKKFIEFESKYGDLESVRKVEKRAEEL-------FPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHH-------TTTS-HHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-------hhhhhHHHHHHH
Confidence 7888888888889999999999998884 465444444443
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.68 E-value=0.033 Score=62.51 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHhcC--CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 695 VEIGEIAAQNLFLL--EPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 695 ~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
.+.+...++++..+ +|.++..|..++-++...|++++|...+++..+.+
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 44566666676664 77788889999999999999999999999987776
No 191
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.66 E-value=0.0033 Score=51.48 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=55.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcc-cCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccC
Q 002772 583 HGEGQEVLELLKNMVAEGSRGGEV-KPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAG 660 (882)
Q Consensus 583 ~g~~~~A~~l~~~m~~~g~~~~~~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g 660 (882)
.|++++|+.+|+++.+.. . .|+...+..+..++.+.|++++|..+++. . ...|+ ....-.+..++.+.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-----~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-----PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-----CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhC
Confidence 578899999999999865 1 11344555578888889999999999888 2 22332 344445577888888
Q ss_pred CHHHHHHHHHh
Q 002772 661 KVEDAYQLINM 671 (882)
Q Consensus 661 ~~~eA~~~~~~ 671 (882)
++++|++.+++
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 88888888764
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.50 E-value=0.0062 Score=48.24 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=53.6
Q ss_pred HHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHH
Q 002772 654 DLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYV 717 (882)
Q Consensus 654 ~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 717 (882)
..|.+.+++++|.+.++.+ ...|+++..|......+...|+.+.|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4677788888888888876 457888778999999999999999999999999999998766543
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.49 E-value=0.042 Score=50.35 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=54.7
Q ss_pred CCCCChhHHHHHHHHhhccCCHHHHHHHHHhC---CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC--CCch
Q 002772 641 GIEPSPDHYACVVDLLGRAGKVEDAYQLINMM---PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD--VASH 715 (882)
Q Consensus 641 ~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~ 715 (882)
.+-|+..+--.|...+.+.|+..||...+++. ++..|.. +.-.+..+....++...+...++++.+.+|. .|..
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 44455555555666666666666666655543 2333333 5555555555556666666666666665553 3444
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 716 YVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 716 ~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
..+++..|+..|++.+|...++...
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHH
Confidence 5555666666666665555555443
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.47 E-value=0.019 Score=58.21 Aligned_cols=61 Identities=13% Similarity=-0.086 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC---CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV---ASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
++..++.++...|+.+.|...|+++++..|++ +.++..++.+|...|++++|.++++...+
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555556666666666665555543 23334445556666666666666655443
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.39 E-value=0.044 Score=47.82 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=67.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 002772 575 VIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN--EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYAC 651 (882)
Q Consensus 575 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 651 (882)
.+..++-..|+.++|+.+|++.+..| .... ...+..+.+++...|++++|..+|+.....+.-.+ +......
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~g-----L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAG-----LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 34567788899999999999999988 5444 34677788889999999999999999887532111 1222233
Q ss_pred HHHHhhccCCHHHHHHHHHh
Q 002772 652 VVDLLGRAGKVEDAYQLINM 671 (882)
Q Consensus 652 li~~l~r~g~~~eA~~~~~~ 671 (882)
+...+...|+.+||++.+-.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44567788999998876654
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.36 E-value=0.015 Score=59.67 Aligned_cols=97 Identities=11% Similarity=-0.035 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-------C--CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMP-------V--RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV 611 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~-------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~ 611 (882)
.|..|.+.|.-.|+++.|+..-+.-. . ..-..+..+.+++.-.|+++.|.+.|+.-...-+..+.-.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666667788888876554321 1 12345667778888888888888888775443200000122234
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMK 637 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~ 637 (882)
+..+|.++|.-...+++|+.++.+-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777776543
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.34 E-value=0.0048 Score=43.01 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHH
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSN 721 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 721 (882)
+|..+..++...|+.+.|++.++++++.+|+|+..+..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 78899999999999999999999999999999988887764
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.34 E-value=0.027 Score=49.11 Aligned_cols=84 Identities=17% Similarity=0.050 Sum_probs=55.4
Q ss_pred HhhccCCHHHHHHHHHhCC----CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC---CCchHHHHHHHHHHcC
Q 002772 655 LLGRAGKVEDAYQLINMMP----PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD---VASHYVLLSNIYSSAQ 727 (882)
Q Consensus 655 ~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~~g 727 (882)
++-..|+.++|..++++.. ..++....+-.+.++++..|+.++|..++++.++-.|+ +......++-.+...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 3444455555555554331 11222225666777788888888888888888877777 6666677778888888
Q ss_pred CchHHHHHHHH
Q 002772 728 LWDKAMDVRKK 738 (882)
Q Consensus 728 ~~~~a~~~~~~ 738 (882)
++++|.+.+-.
T Consensus 90 r~~eAl~~~l~ 100 (120)
T PF12688_consen 90 RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHH
Confidence 88888876654
No 199
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.32 E-value=0.056 Score=51.41 Aligned_cols=120 Identities=15% Similarity=0.172 Sum_probs=73.2
Q ss_pred ChhhHHHHHHHhccC--CcccchHHHHHHHHhhhhcC-CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHH
Q 002772 179 SSFTLVSVALACSNL--SRRDGLRLGRQVHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIV 255 (882)
Q Consensus 179 ~~~t~~~ll~~~~~~--~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 255 (882)
|..+|..++..+... .++|..+-.......|.+.| ..|..+|+.|++.+=+ |.+- -..+|+.+ -
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-----------F 112 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-----------F 112 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------h
Confidence 344444444443332 23355555555556666666 6677777777777755 3221 11111111 0
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCC-hhHHHHHHHHHHHhC
Q 002772 256 SSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEM-LDTGKEIHAYALRND 313 (882)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g 313 (882)
.- .-.+-+-|++++++|...|+.||..|+..++..+++.+. ..+..++.-++-+..
T Consensus 113 ~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk 169 (228)
T PF06239_consen 113 MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFK 169 (228)
T ss_pred cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 00 123456789999999999999999999999999988775 455566666665543
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.30 E-value=0.041 Score=55.81 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=59.3
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC----CCCCCchhhHHHHHHHHHhcCch
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM----PPEFDKAGAWSSLLGACRIHQNV 695 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~~ll~a~~~~~~~ 695 (882)
...|++++|...|+.+.+.|.-.+ ....+-.+..+|...|++++|...|+.+ |..|....+|..++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334556666666666655421111 0234445566666666666666666554 33444454677777788888999
Q ss_pred hHHHHHHHHHhcCCCCCCc
Q 002772 696 EIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 696 ~~a~~~~~~~~~l~p~~~~ 714 (882)
+.|...++++++..|+...
T Consensus 234 ~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHCcCCHH
Confidence 9999999999999997643
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.26 E-value=2.6 Score=46.91 Aligned_cols=194 Identities=11% Similarity=0.161 Sum_probs=91.9
Q ss_pred CHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHH-CCCCCChhhHHHHHHHhccCCcccchHHHHHHHH
Q 002772 129 DMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLY-SNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHG 207 (882)
Q Consensus 129 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 207 (882)
.+++|.+..+. .|....|..+...-.+.-.++-|...|-+... .|++. ++....+|.
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~--------------------vkrl~~i~s 735 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL--------------------VKRLRTIHS 735 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH--------------------HHHhhhhhh
Confidence 36677666654 34556777777666666677777777766543 34321 111111121
Q ss_pred hhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC----h
Q 002772 208 NSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPD----G 283 (882)
Q Consensus 208 ~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~ 283 (882)
.-.+ .+=|.+| -|++++|.+++-+|..+|.. |..+.+.|++-.+.++++. -|-.-| .
T Consensus 736 ~~~q---------~aei~~~--~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e 796 (1189)
T KOG2041|consen 736 KEQQ---------RAEISAF--YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKE 796 (1189)
T ss_pred HHHH---------hHhHhhh--hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHH
Confidence 1111 1112222 36777777777777766542 3444445555544444431 111111 1
Q ss_pred hhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcC
Q 002772 284 VSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQN 363 (882)
Q Consensus 284 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 363 (882)
..|..+-..++....++.|.+.+.+--.. ..++..|.+...+++-+.+-+.+++. ....-.|...+...
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT----------ENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSV 865 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch----------HhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhh
Confidence 23444444444444455555554432111 12334444444455544444444432 22344455555666
Q ss_pred CChHHHHHHHH
Q 002772 364 EYDEEALMLFI 374 (882)
Q Consensus 364 g~~~~A~~l~~ 374 (882)
|..++|.+.|-
T Consensus 866 GMC~qAV~a~L 876 (1189)
T KOG2041|consen 866 GMCDQAVEAYL 876 (1189)
T ss_pred chHHHHHHHHH
Confidence 66666665553
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.26 E-value=0.028 Score=51.74 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=75.9
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhH
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEP--SPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEI 697 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~ 697 (882)
....|+.+.+...+..+...|.-.+ +... ...+....+.++.+-. .++..++..+...|+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~~-----~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELYL-----DALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHHH-----HHHHHHHHHHHHTT-HHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHHH-----HHHHHHHHHHHhccCHHH
Confidence 3456777888888887776542221 1111 2333344444444321 167778888899999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH-----hCCCccCC
Q 002772 698 GEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK-----EMGVRKEP 748 (882)
Q Consensus 698 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~-----~~g~~~~~ 748 (882)
+...+++++.++|-+...|..|..+|...|+..+|.+++++++ +.|+.|.+
T Consensus 81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 81 ALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 9999999999999999999999999999999999999998874 34654443
No 203
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.22 E-value=0.049 Score=48.08 Aligned_cols=95 Identities=12% Similarity=0.157 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHH
Q 002772 539 VVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFA 618 (882)
Q Consensus 539 ~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~ 618 (882)
..++.+++-++++.|+++....+.+..-..|+. +-...+. . .+.++..|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~-----------~---~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD-----------Y---PPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc-----------c---CCCCCCCCCHHHHHHHHH
Confidence 345566666666666666666666544311111 0000111 1 122447888899999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 002772 619 ACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVD 654 (882)
Q Consensus 619 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 654 (882)
+++..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999888887766666665554
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.19 E-value=0.37 Score=50.86 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=105.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-C--hh-h---HHHHHHHHHc---cCChhHHHHHHHHHHHcCCCCCcccCChhHH
Q 002772 544 ALVDMYAKCGCLNFARRVFDLMPVR-N--VI-T---WNVIIMAYGM---HGEGQEVLELLKNMVAEGSRGGEVKPNEVTF 613 (882)
Q Consensus 544 ~li~~y~k~g~~~~A~~~~~~m~~~-~--~~-~---~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~ 613 (882)
.|+-.|-...+++...++++.+... + +. + --...-++.+ .|+.++|++++..++... ..++..||
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-----~~~~~d~~ 220 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-----ENPDPDTL 220 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----CCCChHHH
Confidence 4455688899999999999998832 1 11 1 1123445556 799999999999977666 57788888
Q ss_pred HHHHHHHhc---------cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHH----HHHHHH---H-----hC
Q 002772 614 IALFAACSH---------SGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVE----DAYQLI---N-----MM 672 (882)
Q Consensus 614 ~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~----eA~~~~---~-----~m 672 (882)
..+...|-. ....++|.+.|.+.- .+.|+..+--.++.++..+|... +..++. . +-
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 776654421 234778888887653 55666544334444555555422 222222 1 11
Q ss_pred CCCCCchhhHH--HHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 673 PPEFDKAGAWS--SLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 673 ~~~p~~~~~~~--~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
...+... .|. +++.++...||.+.+..++++++.+.|..
T Consensus 298 ~~~~~~d-YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 298 SLEKMQD-YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 1234444 674 78999999999999999999999998865
No 205
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.17 E-value=0.052 Score=45.63 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCC-CCChhhHhhHHHHhccCCC--------hhHHHHHHHHHHHhCCCCCchhHH
Q 002772 252 NTIVSSLSQNDKFLEAVMFLRQMALRGI-KPDGVSIASVLPACSHLEM--------LDTGKEIHAYALRNDILIDNSFVG 322 (882)
Q Consensus 252 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~ 322 (882)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++..- +-....+|+.++..+ +.|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~-lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNK-LKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhc-cCCcHHHH
Confidence 4456667777999999999999999999 8999999999998876432 334667888888888 88888888
Q ss_pred HHHHHHhhc
Q 002772 323 SALVDMYCN 331 (882)
Q Consensus 323 ~~Li~~y~~ 331 (882)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888776543
No 206
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.13 E-value=2.3 Score=45.11 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=48.6
Q ss_pred hHHHHHHH--HHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 681 AWSSLLGA--CRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 681 ~~~~ll~a--~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
+-+-|..| ...+|+..++.....-+.++.| ++.+|.++|-......+++||...+..+
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44455544 5678899999888888999999 8999999999999999999999998854
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.10 E-value=0.66 Score=42.83 Aligned_cols=133 Identities=10% Similarity=0.002 Sum_probs=98.5
Q ss_pred ccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCc--hhh
Q 002772 606 VKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIE-PSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDK--AGA 681 (882)
Q Consensus 606 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~--~~~ 681 (882)
+-|....-..|..++...|+..||...|++... |+- -|....-.+.++....++..+|...+++. ...|.- +..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 457776677788888888888888888888876 554 35666677777777888888888887764 222221 113
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 682 WSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 682 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
.-.+...+...|..+.|+..++.++..-|+ +..-...+.+++++|+.+++..-+..+-+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 345667788999999999999999999985 56677788899999999988765554433
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.02 E-value=0.056 Score=51.41 Aligned_cols=90 Identities=18% Similarity=0.304 Sum_probs=66.7
Q ss_pred CCChhhHHHHHHHHHc-----cCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcc----------------CC
Q 002772 567 VRNVITWNVIIMAYGM-----HGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHS----------------GM 625 (882)
Q Consensus 567 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~----------------g~ 625 (882)
.+|..+|..+|..|.+ .|..+=....++.|.+-| +.-|..+|+.||+.+=+. .+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg-----v~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Q 118 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG-----VEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQ 118 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC-----CcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHH
Confidence 4566666666666653 355666666677777777 777777777777655431 24
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCH
Q 002772 626 VSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKV 662 (882)
Q Consensus 626 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~ 662 (882)
.+-|++++++|.. +|+.||.+++..|++.+++.+..
T Consensus 119 q~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 119 QECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 5678999999998 59999999999999999988864
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.98 E-value=2.7 Score=44.48 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=62.9
Q ss_pred hcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCc---ccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChh
Q 002772 211 RVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDL---VSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGV 284 (882)
Q Consensus 211 ~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 284 (882)
+..+.|...|-.||.-|...|..++.++++++|..|-. ..|..-|++=....++.....+|.+.+......|..
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW 112 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLW 112 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHH
Confidence 33478899999999999999999999999999998754 479988988888899999999999988876665544
No 210
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=1.4 Score=46.12 Aligned_cols=164 Identities=12% Similarity=0.052 Sum_probs=98.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCC-------CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh-hHHHHHH
Q 002772 546 VDMYAKCGCLNFARRVFDLMP-------VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE-VTFIALF 617 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll 617 (882)
.+...+.|++..|.+.+.+.. .++...|........+.|+..+|+.--++.+.. .|.- ..+..-.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-------D~syikall~ra 328 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-------DSSYIKALLRRA 328 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-------CHHHHHHHHHHH
Confidence 355678899999999998876 345566777777788899999999988888663 2321 1233333
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhH
Q 002772 618 AACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEI 697 (882)
Q Consensus 618 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~ 697 (882)
.++.-.+++++|.+.|+...+. ..+..+-..+ .+|..-+++..-+ -|-.+++.-+...+.+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~---~~s~e~r~~l----------~~A~~aLkkSkRk-----d~ykilGi~~~as~~ei 390 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL---EKDCEIRRTL----------REAQLALKKSKRK-----DWYKILGISRNASDDEI 390 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---ccccchHHHH----------HHHHHHHHHhhhh-----hHHHHhhhhhhcccchh
Confidence 4455568899999988887754 2222222222 2333333322111 55556655555555555
Q ss_pred HHHHHHHHhcCCCCCCch--------HHHHHHHHHHcCCchHHHH
Q 002772 698 GEIAAQNLFLLEPDVASH--------YVLLSNIYSSAQLWDKAMD 734 (882)
Q Consensus 698 a~~~~~~~~~l~p~~~~~--------~~~l~~~y~~~g~~~~a~~ 734 (882)
.....+.++...|+-... +...++.|...++.+++.+
T Consensus 391 kkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 391 KKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred hhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 555556667777764332 2345555666665555543
No 211
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=95.97 E-value=0.063 Score=57.82 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=93.8
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccc
Q 002772 534 MLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-VRN-----VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVK 607 (882)
Q Consensus 534 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~ 607 (882)
+.+.+......+++......+++++..++-+.. .|+ ..|..++|..|..+|..++++++++.=...| +-
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yG-----iF 135 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYG-----IF 135 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcc-----cC
Confidence 334455556666777777778888888887765 222 2455699999999999999999999999999 99
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhcc
Q 002772 608 PNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRA 659 (882)
Q Consensus 608 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~ 659 (882)
||..||+.|++.+.+.|++..|.++...|... +...+..++..-+..+.+.
T Consensus 136 ~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 136 PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred CChhhHHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999888765 6666666665555444444
No 212
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.95 E-value=0.35 Score=48.69 Aligned_cols=171 Identities=13% Similarity=0.069 Sum_probs=104.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC--CCChhh----HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh--hHHHHH
Q 002772 545 LVDMYAKCGCLNFARRVFDLMP--VRNVIT----WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE--VTFIAL 616 (882)
Q Consensus 545 li~~y~k~g~~~~A~~~~~~m~--~~~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~--~t~~~l 616 (882)
....+.+.|++++|.+.|+++. .|+... .-.++.+|-+.+++++|+..|++.++.. |+. +.+...
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-------P~~~~~~~a~Y 110 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-------PTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------cCCCchHHHHH
Confidence 3445566788888888888887 454321 1234567778888888888888888854 442 344444
Q ss_pred HHHHhc--cC---------------C---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCC
Q 002772 617 FAACSH--SG---------------M---VSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEF 676 (882)
Q Consensus 617 l~a~~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p 676 (882)
+.+.++ .+ + ..+|.+.|+.+++ -|-...-..+|...+..+...-
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHH
Confidence 444332 00 1 1233344444443 3333344455555444332110
Q ss_pred CchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 677 DKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA---SHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 677 ~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
... -+ ....-|.+.|+..-|..-++.+++--|+.+ .+...+.+.|...|..++|..+.....
T Consensus 175 a~~-e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 AKY-EL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH-HH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 000 11 334457778888888999999998877654 456788899999999999998877654
No 213
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.81 E-value=2.2 Score=42.20 Aligned_cols=217 Identities=19% Similarity=0.121 Sum_probs=154.9
Q ss_pred hHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHccCChhHHHHH
Q 002772 519 ALAKGKEIHAYAIRNMLA-TDVVVGSALVDMYAKCGCLNFARRVFDLMP-----VRNVITWNVIIMAYGMHGEGQEVLEL 592 (882)
Q Consensus 519 ~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~l 592 (882)
....+...+......... .....+......+...+.+..+...+.... ......+..+...+...+++.++++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333444444444433322 135677778888899999999988887754 34456677777788888889999999
Q ss_pred HHHHHHcCCCCCcccCChhHHHHHHH-HHhccCCHHHHHHHHHHhHHhcCC--CCChhHHHHHHHHhhccCCHHHHHHHH
Q 002772 593 LKNMVAEGSRGGEVKPNEVTFIALFA-ACSHSGMVSEGMDLFYKMKDDYGI--EPSPDHYACVVDLLGRAGKVEDAYQLI 669 (882)
Q Consensus 593 ~~~m~~~g~~~~~~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~l~r~g~~~eA~~~~ 669 (882)
++...... ..+ ......... .+...|+++++...+...... .- ......+......+...++.++|...+
T Consensus 118 ~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 118 LEKALALD-----PDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHcCC-----CCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 99998854 222 122222333 688999999999999998542 21 123444445555577789999999988
Q ss_pred HhC-CCCCC-chhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 670 NMM-PPEFD-KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 670 ~~m-~~~p~-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
.+. ...+. ....+..+...+...++.+.+...+..+++..|.....+..++..+...|.++++...+.+....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 191 EKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 876 33444 23378888999999999999999999999999987777788888888778899999888776554
No 214
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.81 E-value=0.053 Score=46.49 Aligned_cols=91 Identities=19% Similarity=0.146 Sum_probs=72.6
Q ss_pred HHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC----chHHHHHHHHHHcCC
Q 002772 654 DLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA----SHYVLLSNIYSSAQL 728 (882)
Q Consensus 654 ~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~ 728 (882)
-+++..|++++|++.|.+. ..-|..+.+|+.-..+++.+|+.+.|..-.++++++.-+-. ..|+.-+-+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566778888888877654 34566666899999999999999999999999999864332 358888999999999
Q ss_pred chHHHHHHHHHHhCCC
Q 002772 729 WDKAMDVRKKMKEMGV 744 (882)
Q Consensus 729 ~~~a~~~~~~m~~~g~ 744 (882)
-|+|..-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998888777664
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.68 E-value=0.61 Score=51.14 Aligned_cols=202 Identities=13% Similarity=0.102 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCC--chHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHH
Q 002772 148 WNSMIATLCRFGK--WDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMA 225 (882)
Q Consensus 148 ~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~ 225 (882)
++..=.+|.+-.+ +-+-+.-+++|+++|-.|+......+ |+.. +.+.+|..+|.. .|. -|.-+.
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~---~Ay~---gKF~EAAklFk~---~G~-----enRAlE 666 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADV---FAYQ---GKFHEAAKLFKR---SGH-----ENRALE 666 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHH---HHhh---hhHHHHHHHHHH---cCc-----hhhHHH
Confidence 3344444444333 23445556788888888887664433 4444 666666666532 221 134455
Q ss_pred HHHhcCChhHHHHHHhcCCC--------------CCcccHHHHHHHHHcCCChHHHHHHHHH------HHHCCCCC---C
Q 002772 226 MYAKLGRVDDAKTLFKSFED--------------RDLVSWNTIVSSLSQNDKFLEAVMFLRQ------MALRGIKP---D 282 (882)
Q Consensus 226 ~y~~~g~~~~A~~~f~~m~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~------m~~~g~~p---d 282 (882)
+|.....+|.|.++...-.. +|+.-=.+....+...|+.++|.++.-+ +.+-+-+. +
T Consensus 667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e 746 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE 746 (1081)
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence 55555566666665543321 1111112233445566777776655321 11222222 2
Q ss_pred hhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhc
Q 002772 283 GVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQ 362 (882)
Q Consensus 283 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 362 (882)
..+...+..-+.+...+..|.++|..+-.. ..++++....+++++|.++-++.++--...|-.-..-++.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 233333333344445555555555544221 2455666666677777666666665322223333333333
Q ss_pred CCChHHHHHHH
Q 002772 363 NEYDEEALMLF 373 (882)
Q Consensus 363 ~g~~~~A~~l~ 373 (882)
+.+++||.+.|
T Consensus 817 ~DrFeEAqkAf 827 (1081)
T KOG1538|consen 817 NDRFEEAQKAF 827 (1081)
T ss_pred hhhHHHHHHHH
Confidence 44444443333
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.094 Score=54.62 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=79.5
Q ss_pred hHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 002772 647 DHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSS 725 (882)
Q Consensus 647 ~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 725 (882)
..+..|.-++.+.+++.+|++..++. ..+|++..++--=..||...|+++.|+..++++++++|+|-.+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667788889999999999988865 45677666888888999999999999999999999999999999989888777
Q ss_pred cCCchHH-HHHHHHHHhC
Q 002772 726 AQLWDKA-MDVRKKMKEM 742 (882)
Q Consensus 726 ~g~~~~a-~~~~~~m~~~ 742 (882)
..+..+. .+++..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7666554 6788888554
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.66 Score=45.28 Aligned_cols=169 Identities=7% Similarity=-0.097 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CChh--------hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMPV--RNVI--------TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV 611 (882)
Q Consensus 542 ~~~li~~y~k~g~~~~A~~~~~~m~~--~~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~ 611 (882)
+++|+..|.-..-+++-...|+.-.. ..+. .-+.++..+.-+|.+.-.+.++++.++.. -+-+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-----~e~~p~ 213 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-----PEQEPQ 213 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-----CcccHH
Confidence 56666666655555555555554332 2222 33566777777889999999999999976 445667
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH-----HHHHHHHhhccCCHHHHHHHHHhCCC-CCCchhhHHHH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDH-----YACVVDLLGRAGKVEDAYQLINMMPP-EFDKAGAWSSL 685 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-----~~~li~~l~r~g~~~eA~~~~~~m~~-~p~~~~~~~~l 685 (882)
....|.+.-.+.|+++.|..+|+...+. .-+.+... ...+...+.-++++.+|...+.+.+. +|.++..-++-
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnK 292 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNK 292 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchH
Confidence 7778888888999999999999977764 22233222 33333445566777777777766642 33343233333
Q ss_pred HHHHHhcCchhHHHHHHHHHhcCCCCCCchH
Q 002772 686 LGACRIHQNVEIGEIAAQNLFLLEPDVASHY 716 (882)
Q Consensus 686 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 716 (882)
.-...-.|+...|.+..+.+++..|.....-
T Consensus 293 ALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 293 ALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 3333445677778888888888777654443
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.39 Score=46.83 Aligned_cols=171 Identities=10% Similarity=-0.049 Sum_probs=123.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCCCC--Cc--------ccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhH
Q 002772 220 MNALMAMYAKLGRVDDAKTLFKSFEDR--DL--------VSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASV 289 (882)
Q Consensus 220 ~~~Li~~y~~~g~~~~A~~~f~~m~~~--~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 289 (882)
+++|+..|.-..-+++-...|+.-..| .+ ..-+.++..+.-.|.+.-.++++.+.++.....+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 567777776666666666666644332 22 34467788888889999999999999987666677777888
Q ss_pred HHHhccCCChhHHHHHHHHHHHhCC----CCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---CceehHHHHHHHhc
Q 002772 290 LPACSHLEMLDTGKEIHAYALRNDI----LIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---KIALWNAMITGYGQ 362 (882)
Q Consensus 290 l~a~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~ 362 (882)
.+.-.+.||.+.+...++.+.+..+ ......+.......|.-.+++..|.+.|++++.. |++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888899999999999997766431 2334445555556677888999999999988865 45556655555666
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCcchHhhHH
Q 002772 363 NEYDEEALMLFIKMEEVAGLWPNATTMSSVV 393 (882)
Q Consensus 363 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 393 (882)
.|+..+|++.+..| ....|...+-.+++
T Consensus 299 lg~l~DAiK~~e~~---~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 299 LGKLKDALKQLEAM---VQQDPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHH---hccCCccchhhhHH
Confidence 78999999999999 44667766655444
No 219
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=7.3 Score=44.84 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=44.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 002772 426 ALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 426 ~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
-++..+.+..+.+.+..+.+...+.+...|-.++..+++.+..+.-.+...+.++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 4566677788888888888888777889999999999999977777666666654
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.19 E-value=0.012 Score=47.20 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcC----C---CCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLL----E---PDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l----~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
++..+...+...|+.+.|...+++++++ . |+...++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666666643 1 2224567788899999999999998887653
No 221
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.18 E-value=4.8 Score=41.96 Aligned_cols=291 Identities=14% Similarity=0.093 Sum_probs=173.4
Q ss_pred CChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhc--CCCCcchhhHHHHHHHhCCCCchHH--HHHHHHHHHhcCChHH
Q 002772 364 EYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVR--SEAFPDKEGIHGHAIKLGLGRDRYV--QNALMDMYSRMGRIEI 439 (882)
Q Consensus 364 g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~--~~~Li~~y~~~g~~~~ 439 (882)
|+-..|.++-.+- . .-+..|...+..+|.+-.. .|+.+.|.+-|+.|... |.... ...|.----+.|..+.
T Consensus 98 Gda~lARkmt~~~-~-~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 98 GDASLARKMTARA-S-KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred CchHHHHHHHHHH-H-hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 4444444443333 1 1244455555555554432 46677777777666531 11111 1222223346777777
Q ss_pred HHHHHhhCCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcc--hHhhHHHhh
Q 002772 440 SKTIFDDMEVR---DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSI--TLMTVLPGC 514 (882)
Q Consensus 440 A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~--t~~~ll~a~ 514 (882)
|+..-+..-.. -.-.|.+.+...+..|+++.|+++.+.-... . -+.++.. .-..||.+-
T Consensus 173 Ar~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~--~--------------vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 173 ARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA--K--------------VIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH--H--------------hhchhhHHHHHHHHHHHH
Confidence 77776665422 2346778889999999999999999876651 1 3344432 122233222
Q ss_pred c--C-cchHHHHHHHHHHHHHhcCCCchhHHH-HHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHccCChhH
Q 002772 515 G--A-LSALAKGKEIHAYAIRNMLATDVVVGS-ALVDMYAKCGCLNFARRVFDLMP--VRNVITWNVIIMAYGMHGEGQE 588 (882)
Q Consensus 515 ~--~-~~~~~~a~~i~~~~~~~g~~~~~~~~~-~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~ 588 (882)
+ . ..+...|+..-.+..+ +.||..-.. .-...|.+.|++.++-++++.+- +|....|. ...+++.|+ .
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--t 310 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--T 310 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--c
Confidence 1 1 1234445554444444 344433222 22567899999999999999886 44444443 223344554 4
Q ss_pred HHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh-ccCCHHHHH
Q 002772 589 VLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLG-RAGKVEDAY 666 (882)
Q Consensus 589 A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~-r~g~~~eA~ 666 (882)
++.=+++...... .+|| ..+...+..+-...|++..|..--+... ...|....|-.|.+.=. ..|+-.++.
T Consensus 311 a~dRlkRa~~L~s----lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 311 ALDRLKRAKKLES----LKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVR 383 (531)
T ss_pred HHHHHHHHHHHHh----cCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHH
Confidence 5555555443221 6777 4566777778888899988887766665 45788999998888864 459999999
Q ss_pred HHHHhCCCCCCchhhHHHHHHHH
Q 002772 667 QLINMMPPEFDKAGAWSSLLGAC 689 (882)
Q Consensus 667 ~~~~~m~~~p~~~~~~~~ll~a~ 689 (882)
..+.+....|.++ .|......|
T Consensus 384 ~wlAqav~APrdP-aW~adg~vs 405 (531)
T COG3898 384 QWLAQAVKAPRDP-AWTADGVVS 405 (531)
T ss_pred HHHHHHhcCCCCC-cccccCccc
Confidence 9998876677777 786654433
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.17 E-value=0.028 Score=45.09 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002772 571 ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKD 638 (882)
Q Consensus 571 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 638 (882)
.+|+.+...|...|++++|++.|++.++....-++-.|+ ..++..+...+...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456777777888888888888888776431000001233 45677777788888888888888877654
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=95.07 E-value=1.1 Score=48.10 Aligned_cols=159 Identities=11% Similarity=0.110 Sum_probs=108.0
Q ss_pred hhH--HHHHHHHHccC-----ChhHHHHHHHHHHHcCCCCCcccCChh-HHHHHHHHH--------h-ccCCHHHHHHHH
Q 002772 571 ITW--NVIIMAYGMHG-----EGQEVLELLKNMVAEGSRGGEVKPNEV-TFIALFAAC--------S-HSGMVSEGMDLF 633 (882)
Q Consensus 571 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~~~~~~pd~~-t~~~ll~a~--------~-~~g~~~~a~~~~ 633 (882)
..| ..++.|....- ..+.|+.+|.+.+... ++.|+-. .|..+..++ + ......+|.+.-
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A 327 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELL 327 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 566 55666554421 3568899999998321 1567743 333332221 1 133456666666
Q ss_pred HHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 002772 634 YKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 634 ~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 711 (882)
+...+ +.| |......+..++.-.|+++.|..+|++. ...|+.+.+|......+.-.|+.+.|.+..+++++++|.
T Consensus 328 ~rAve---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 328 DYVSD---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHh---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 66664 333 5667777777778788899999999876 568888888988888899999999999999999999997
Q ss_pred CCchHHHHHH--HHHHcCCchHHHHHHH
Q 002772 712 VASHYVLLSN--IYSSAQLWDKAMDVRK 737 (882)
Q Consensus 712 ~~~~~~~l~~--~y~~~g~~~~a~~~~~ 737 (882)
-..+-+.--+ +|+..+ .|+|.+++-
T Consensus 405 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 405 RRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred hhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 7665554333 465544 577777665
No 224
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=8.1 Score=44.13 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=15.4
Q ss_pred HHHHHHcCCChHHHHHHHHHH
Q 002772 254 IVSSLSQNDKFLEAVMFLRQM 274 (882)
Q Consensus 254 li~~~~~~g~~~~A~~l~~~m 274 (882)
=|..+.+.+.+++|++.-+.-
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~ 382 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKAS 382 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhc
Confidence 356677888888888876543
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.17 Score=52.87 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEE
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIH 760 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~ 760 (882)
...+|...|.+.++...|.....++++++|+|.-+..--+.+|...|.++.|...++++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~------------------ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL------------------ 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh------------------
Confidence 67778888889999999999999999999999999999999999999999999999988764
Q ss_pred EEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 002772 761 KFLAGDGSHQQSEQLHGFLENLSERMRK 788 (882)
Q Consensus 761 ~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 788 (882)
.|...+|...|..|.+++++
T Consensus 321 --------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 --------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred --------CCCcHHHHHHHHHHHHHHHH
Confidence 45667777777777766654
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.81 E-value=1.5 Score=38.13 Aligned_cols=140 Identities=12% Similarity=0.098 Sum_probs=79.5
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccC
Q 002772 581 GMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAG 660 (882)
Q Consensus 581 ~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g 660 (882)
...|..++..++..+...+. +..-++.++--...+-+=+-..+.++.+-+-|.+.|-. ....+|..|.+.|
T Consensus 13 ildG~V~qGveii~k~v~Ss--------ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n 83 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS--------NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRN 83 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS---------HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT
T ss_pred HHhchHHHHHHHHHHHcCcC--------CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhc
Confidence 34577788888888876643 23333333332222233334445555554433332211 1122344444444
Q ss_pred CHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 661 KVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 661 ~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
...| ...--+.+...+|.-+.-.+++..+++-+-.+|...+-++++|.+.|...++.+++++.-
T Consensus 84 ~~se----------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 84 KLSE----------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp ---H----------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred chHH----------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3322 445556777888888989999999887666678899999999999999999999999999
Q ss_pred hCCCc
Q 002772 741 EMGVR 745 (882)
Q Consensus 741 ~~g~~ 745 (882)
++|++
T Consensus 148 ekG~k 152 (161)
T PF09205_consen 148 EKGLK 152 (161)
T ss_dssp HTT-H
T ss_pred HhchH
Confidence 99974
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=94.67 E-value=0.39 Score=51.50 Aligned_cols=117 Identities=11% Similarity=0.105 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhh---------ccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC
Q 002772 625 MVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLG---------RAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 625 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~---------r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~ 693 (882)
..+.|..+|.+....-.+.|+ ...|..+..++. ......+|.++.++. ...|+++.+...+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467888899998854466776 444544433322 133445666666654 567777767777777788888
Q ss_pred chhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 694 NVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
+.+.|...++++.+++|+.+.++...+++..-.|+.++|.+..++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999998887443
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.67 E-value=0.65 Score=49.80 Aligned_cols=75 Identities=8% Similarity=0.095 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCCCc-----cCC--ceeEEEeCCEEEEEEe-CCCCCcchHHHHHHHHHHHHHH
Q 002772 715 HYVLLSNIYSSAQLWDKAMDVRKKMKEMGVR-----KEP--GCSWIEFGDEIHKFLA-GDGSHQQSEQLHGFLENLSERM 786 (882)
Q Consensus 715 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~-----~~~--~~s~i~~~~~~~~f~~-~~~~~~~~~~i~~~l~~l~~~m 786 (882)
....++.+|....+-+++. +-+..++..+. -.. -.+..+.++..+.+++ |.. ..+++.....+...+++
T Consensus 248 av~~f~~L~~~e~k~~e~q-~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~--e~v~~al~~ae~~r~~L 324 (453)
T PLN03098 248 GIVAFVSLFLWENKKEEEQ-MSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK--ESVTLAMQKAERYRTEL 324 (453)
T ss_pred HHHHHHHHHHHHhcccHHH-HHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCH--HHHHHHHHHhHHHHHHH
Confidence 3446666665554444443 22334433221 111 1223345566666654 433 34555566677777888
Q ss_pred HHcCcc
Q 002772 787 RKEGYV 792 (882)
Q Consensus 787 ~~~g~~ 792 (882)
.+.|+.
T Consensus 325 ~~r~Vl 330 (453)
T PLN03098 325 LKRGVL 330 (453)
T ss_pred HHcCcE
Confidence 888754
No 229
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.66 E-value=9.5 Score=42.81 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=25.8
Q ss_pred ChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHH
Q 002772 232 RVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMA 275 (882)
Q Consensus 232 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 275 (882)
.+++|.+..+.-+ ....|..+.....+.-.++.|...|-+..
T Consensus 678 gledA~qfiEdnP--HprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNP--HPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred chHHHHHHHhcCC--chHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 4566666655544 44567777776666666666666665543
No 230
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.64 E-value=2.7 Score=50.11 Aligned_cols=92 Identities=22% Similarity=0.286 Sum_probs=60.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhH--HHHHHHHHhcc
Q 002772 546 VDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVT--FIALFAACSHS 623 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t--~~~ll~a~~~~ 623 (882)
.-+|.++|+.++|.+.|. ..|++.+|+.+..+|-. .-|... -..|.+-+...
T Consensus 959 al~Ye~~GklekAl~a~~------------------~~~dWr~~l~~a~ql~~--------~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYK------------------ECGDWREALSLAAQLSE--------GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHhccHHHHHHHHH------------------HhccHHHHHHHHHhhcC--------CHHHHHHHHHHHHHHHHHc
Confidence 456888888888866554 45788888888777632 112221 24566667777
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC
Q 002772 624 GMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 624 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m 672 (882)
++.-+|-++..+...+ +.--+..|+++-.+++|..+....
T Consensus 1013 ~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 8888887777666543 344566777777888887766554
No 231
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.56 E-value=3.1 Score=41.87 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=18.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 002772 458 MITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 458 li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
....+.+.|++++|.+.|+++..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~ 60 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDN 60 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455678999999999999976
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.55 E-value=0.25 Score=45.42 Aligned_cols=71 Identities=25% Similarity=0.388 Sum_probs=41.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChhH
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKD----DYGIEPSPDH 648 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 648 (882)
...++..+...|++++|+++.++++... +-|...+..++.++...|+..+|.+.|+.+.+ +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445556666777777777777777753 33456677777777777777777777666542 3477776655
Q ss_pred H
Q 002772 649 Y 649 (882)
Q Consensus 649 ~ 649 (882)
-
T Consensus 139 ~ 139 (146)
T PF03704_consen 139 R 139 (146)
T ss_dssp H
T ss_pred H
Confidence 3
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.43 E-value=0.27 Score=54.02 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=88.5
Q ss_pred HHccCChhHHHHHHHHHH-HcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhc
Q 002772 580 YGMHGEGQEVLELLKNMV-AEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGR 658 (882)
Q Consensus 580 ~~~~g~~~~A~~l~~~m~-~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r 658 (882)
....|+++++.++.+.-. -.. + | ..-...++.-+.+.|..+.|+++.+.-..+ .++..+
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~-----i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~ 330 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPN-----I-P-KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQ 330 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHH
T ss_pred HHHcCChhhhhhhhhhhhhccc-----C-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHh
Confidence 345677887766664111 111 1 2 334677788888899999998886655443 467778
Q ss_pred cCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 659 AGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 659 ~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
.|+++.|.++.++.. +.. .|..|......+||++.|+.+++++ .-+..|+-+|...|+-+.-.++-+.
T Consensus 331 lg~L~~A~~~a~~~~---~~~-~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 331 LGNLDIALEIAKELD---DPE-KWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp CT-HHHHHHHCCCCS---THH-HHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcC---cHH-HHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHH
Confidence 999999999887653 344 9999999999999999999999874 3467788899999998877777776
Q ss_pred HHhCC
Q 002772 739 MKEMG 743 (882)
Q Consensus 739 m~~~g 743 (882)
...+|
T Consensus 399 a~~~~ 403 (443)
T PF04053_consen 399 AEERG 403 (443)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 66665
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.33 E-value=0.32 Score=42.93 Aligned_cols=84 Identities=18% Similarity=0.282 Sum_probs=59.1
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHhHH--------------hcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC--
Q 002772 609 NEVTFIALFAACSHSGMVSEGMDLFYKMKD--------------DYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-- 672 (882)
Q Consensus 609 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~--------------~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-- 672 (882)
|..++..++.++++.|+++....+.+..-. ...+.|+.....+++.+|+..|++..|+++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456777777788888887777777655321 1134478888999999999999999999988764
Q ss_pred --CCCCCchhhHHHHHHHHHhcC
Q 002772 673 --PPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 673 --~~~p~~~~~~~~ll~a~~~~~ 693 (882)
+++-+.. +|..|+.=+....
T Consensus 81 ~Y~I~i~~~-~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKE-FWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHH-HHHHHHHHHHHhc
Confidence 3333344 8999886554443
No 235
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.74 Score=46.39 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=15.4
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 002772 569 NVITWNVIIMAYGMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 569 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 598 (882)
|...|--|...|...|+++.|+.-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444555555555555555555555555544
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.16 E-value=0.58 Score=46.11 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=60.1
Q ss_pred CCCcchHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCc----------------hhHH
Q 002772 39 TRCKESWIESLRSEARS-----NQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDL----------------SLGK 97 (882)
Q Consensus 39 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----------------~~a~ 97 (882)
.+|..+|-+.+..+... ++.+---..++.|.+.|+.-|..+|..||+.+-+..-. .-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 67777888887777643 44444556678888999999999999999887554321 2245
Q ss_pred HHHHHHHHhcCCCCChhHHhHHHHHHHhcC
Q 002772 98 QIHAHVVKYGYGLSSVTVANTLVNMYGKCG 127 (882)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 127 (882)
.++++|...|+. ||..+-..|++++++.+
T Consensus 144 ~vLeqME~hGVm-PdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 144 KVLEQMEWHGVM-PDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHcCCC-CchHHHHHHHHHhcccc
Confidence 566666666666 66666666666666655
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=1.3 Score=44.52 Aligned_cols=119 Identities=13% Similarity=0.067 Sum_probs=77.9
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHH---HHHHhcCchh
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLL---GACRIHQNVE 696 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll---~a~~~~~~~~ 696 (882)
....|+..+|...|+..... .+-+...--.|..+|...|+.++|..++..+|.+-... .|..|. ....+-.+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHHHHhcCC
Confidence 44567777777777777653 22235556667777888888888888888877554444 443321 1122222221
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 697 IGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 697 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
.. ..++.-+..+|+|...-..|+..|...|+.++|.+.+-.+..+
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 2345566779999999999999999999999999877666544
No 238
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.86 E-value=3 Score=40.71 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=82.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC----hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN----EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD 647 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 647 (882)
.+-.....+.+.|++.+|++.|+++.... |+ ......+..++-+.|++++|...++...+.|.-.|...
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRY-------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 34455666788899999999999998865 43 23455677788888999999999988887754444322
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCch------------
Q 002772 648 HYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASH------------ 715 (882)
Q Consensus 648 ~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~------------ 715 (882)
+.....+++........ +...+..+....|...++.+++.-|+++-.
T Consensus 80 -~A~Y~~g~~~~~~~~~~--------------------~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 80 -YALYMLGLSYYKQIPGI--------------------LRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp -HHHHHHHHHHHHHHHHH--------------------H-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHhCccc--------------------hhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence 11111111110000000 000122234455666666666666665432
Q ss_pred -----HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 716 -----YVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 716 -----~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
-..++..|.+.|+|..|..-++.+.+.
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 235778899999999999888877664
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.76 E-value=7.5 Score=38.21 Aligned_cols=201 Identities=18% Similarity=0.083 Sum_probs=147.1
Q ss_pred cchHhhHHHhhcCcchHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHHHHH-
Q 002772 504 SITLMTVLPGCGALSALAKGKEIHAYAIRN-MLATDVVVGSALVDMYAKCGCLNFARRVFDLMPV--RNV-ITWNVIIM- 578 (882)
Q Consensus 504 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~~-~~~~~li~- 578 (882)
...+..........+.+..+...+...... ........+..+...+...+....+...+..... ++. ..+.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 455666667777778888888777777653 3445566777778888888999999999988763 222 33333444
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCcc--cCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH
Q 002772 579 AYGMHGEGQEVLELLKNMVAEGSRGGEV--KPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDL 655 (882)
Q Consensus 579 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~--~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 655 (882)
.+...|++++|...|++..... . ......+......+...+..+++...+...... ... ....+..+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 211 (291)
T COG0457 139 ALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLL 211 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHH
Confidence 7889999999999999997632 1 012334444445567889999999999999863 333 46788888899
Q ss_pred hhccCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 002772 656 LGRAGKVEDAYQLINMMP-PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 656 l~r~g~~~eA~~~~~~m~-~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 711 (882)
+...+.+++|...+.... ..|+....+..+...+...++.+.+....++.++..|.
T Consensus 212 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 212 YLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999999888763 34442226666777766677899999999999999997
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.73 E-value=4.3 Score=43.97 Aligned_cols=56 Identities=14% Similarity=0.101 Sum_probs=31.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC-C-hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 002772 575 VIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP-N-EVTFIALFAACSHSGMVSEGMDLFYKM 636 (882)
Q Consensus 575 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p-d-~~t~~~ll~a~~~~g~~~~a~~~~~~m 636 (882)
.+..+..+.|+.++|++.|++|.+.. ++ | ......|+.++...+.+.++..++.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34555556666666777666666542 11 1 223445666666666666666666554
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.68 E-value=0.96 Score=40.44 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=37.3
Q ss_pred ccCCHHHHHHHHHhC----CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 002772 658 RAGKVEDAYQLINMM----PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 658 r~g~~~eA~~~~~~m----~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
+.|++++|.+.|+.+ |..|-...+--.|+.++...++.+.|...+++.++++|.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 445555555555544 333444445566777888888888888888888888876654
No 242
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.56 E-value=13 Score=40.33 Aligned_cols=102 Identities=10% Similarity=0.057 Sum_probs=76.2
Q ss_pred ccCChhHHH-HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh---hccCCHHHHHHHHHhCC--CCCCch
Q 002772 606 VKPNEVTFI-ALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLL---GRAGKVEDAYQLINMMP--PEFDKA 679 (882)
Q Consensus 606 ~~pd~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l---~r~g~~~eA~~~~~~m~--~~p~~~ 679 (882)
..|+.+|+. .++.-+-..|-+.+|...+..+.. --+|+...|..+|..= ..+| +.-+.++++.|. +..+..
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 478888875 467777788999999999999986 4556788888888753 3444 677777777762 344444
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHhc-CCCC
Q 002772 680 GAWSSLLGACRIHQNVEIGEIAAQNLFL-LEPD 711 (882)
Q Consensus 680 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~-l~p~ 711 (882)
.|...+.--..+|..+-+-.++.++.+ ++|.
T Consensus 532 -lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 532 -LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred -HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 999988888889988888888877776 5664
No 243
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.33 E-value=1.4 Score=42.99 Aligned_cols=163 Identities=13% Similarity=0.095 Sum_probs=95.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCC--CCC----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh--hHHHHHH
Q 002772 546 VDMYAKCGCLNFARRVFDLMP--VRN----VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE--VTFIALF 617 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~--~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~--~t~~~ll 617 (882)
...+...|++++|.+.|+.+. -|+ ..+.-.++.++-+.|++++|...|++.++.- |+. ..+...+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-------P~~~~~~~A~Y~ 84 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-------PNSPKADYALYM 84 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TT-TTHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCcchhhHHHH
Confidence 344567789999999998876 232 2345567788889999999999999999854 543 2233333
Q ss_pred HHHhc-------------cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHH
Q 002772 618 AACSH-------------SGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSS 684 (882)
Q Consensus 618 ~a~~~-------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ 684 (882)
.+.+. .+...+|...|+.+.++ |=......+|...+..+...-.. -=-.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~la~--~e~~ 146 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNRLAE--HELY 146 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHHHHH--HHHH
Confidence 33222 12234445555555443 44444555665554443110000 1112
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCc---hHHHHHHHHHHcCCchHHH
Q 002772 685 LLGACRIHQNVEIGEIAAQNLFLLEPDVAS---HYVLLSNIYSSAQLWDKAM 733 (882)
Q Consensus 685 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~ 733 (882)
+..-|...|...-|..-++.+++--|+.+. +...|...|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 345677888888888889999998887654 4567788888888877443
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.30 E-value=3 Score=37.83 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcC
Q 002772 80 FPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFG 159 (882)
Q Consensus 80 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 159 (882)
...++..+...+........++.+.+.+ . .++..+|.|+..|++.. .+.....+.. ..+......+++.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~-~~~~~~~~li~ly~~~~--~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-S-ENPALQTKLIELYAKYD--PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-c-cchhHHHHHHHHHHHHC--HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 3455555555566666666666666665 2 56667777777777754 3444444442 223344445666666666
Q ss_pred CchHHHHHHHHH
Q 002772 160 KWDLALEAFRMM 171 (882)
Q Consensus 160 ~~~~A~~~~~~m 171 (882)
.++++.-++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666666554
No 245
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.16 E-value=0.097 Score=33.83 Aligned_cols=32 Identities=25% Similarity=0.104 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
+|..++.++...|+.+.|+..++++++++|++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 78899999999999999999999999999963
No 246
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.94 E-value=0.15 Score=32.85 Aligned_cols=32 Identities=25% Similarity=0.165 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
+|..+...+...|+.+.|...++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 67888888999999999999999999999875
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=6.6 Score=39.67 Aligned_cols=147 Identities=13% Similarity=0.065 Sum_probs=96.6
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh
Q 002772 578 MAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLG 657 (882)
Q Consensus 578 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~ 657 (882)
......|++.+|..+|+...... +-+...-..+..++...|+++.|..++..+-.. --.........-+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLE 214 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC------cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHH
Confidence 34567788888888888888754 222445566777888888888888888877542 11111222334566777
Q ss_pred ccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCC--CCCCchHHHHHHHHHHcCCchH
Q 002772 658 RAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLE--PDVASHYVLLSNIYSSAQLWDK 731 (882)
Q Consensus 658 r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~--p~~~~~~~~l~~~y~~~g~~~~ 731 (882)
++....+..++..+....|++...--.|...+...|+.+.|...+=.++..+ -.|...--.|..++..-|.-|.
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 7777777777777766678777677777778888888877666555555433 3455566666677766664443
No 248
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.67 E-value=3.3 Score=42.59 Aligned_cols=231 Identities=10% Similarity=-0.029 Sum_probs=134.2
Q ss_pred hcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHh--cCCCc---
Q 002772 464 ICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRN--MLATD--- 538 (882)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~--- 538 (882)
+..+.++|+..+.+-+.+.. ...---.++..+..+.++.|..+++...-...+.. .....
T Consensus 18 ~s~~~~~al~~w~~~L~~l~---------------~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~ 82 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLS---------------DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFL 82 (518)
T ss_pred cCchHHHHHHHHHHHHHHHH---------------HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777665210 11222346667777778888777665443222211 11111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-------hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh
Q 002772 539 VVVGSALVDMYAKCGCLNFARRVFDLMP-VRN-------VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE 610 (882)
Q Consensus 539 ~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~ 610 (882)
...|-.|...+-+.-++..++.+-..-. -|. -....+|..++.-.+.++++++.|+....--...+.--...
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 2233444455555445555544433211 111 12234466777778889999999999876431000011113
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHH---hcCCCCChhHHHHH-----HHHhhccCCHHHHHHHHHhC-------CCC
Q 002772 611 VTFIALFAACSHSGMVSEGMDLFYKMKD---DYGIEPSPDHYACV-----VDLLGRAGKVEDAYQLINMM-------PPE 675 (882)
Q Consensus 611 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~l-----i~~l~r~g~~~eA~~~~~~m-------~~~ 675 (882)
..+..|-+.+....++++|.-+..+..+ .+++..-..-|.++ .-+|-..|++-+|.+..++. ...
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 4688888889999999999877665542 24544444444443 34556677777777776653 233
Q ss_pred CCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 002772 676 FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLE 709 (882)
Q Consensus 676 p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 709 (882)
+-.......+...|+..|+.|.|..-|+.+....
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 3333356678889999999999999998887653
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.67 E-value=2.6 Score=37.70 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHhcCCCCCC
Q 002772 695 VEIGEIAAQNLFLLEPDVA 713 (882)
Q Consensus 695 ~~~a~~~~~~~~~l~p~~~ 713 (882)
...|...++.++..-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5677777788888888653
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.51 E-value=1.5 Score=44.42 Aligned_cols=158 Identities=11% Similarity=0.027 Sum_probs=112.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHH----HHhh
Q 002772 582 MHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVV----DLLG 657 (882)
Q Consensus 582 ~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li----~~l~ 657 (882)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|..+.-...++++.. .-.|+...|+.+= -++.
T Consensus 115 ~~g~~h~a~~~wdklL~d------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred ccccccHHHHHHHHHHHh------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHH
Confidence 357888888899999886 466778888888899999999888888888875 4467776666543 3456
Q ss_pred ccCCHHHHHHHHHhC-CCCCCchhhHHHH--HHHHHhcCchhHHHHHHHHHhcCCCC----CCchHHHHHHHHHHcCCch
Q 002772 658 RAGKVEDAYQLINMM-PPEFDKAGAWSSL--LGACRIHQNVEIGEIAAQNLFLLEPD----VASHYVLLSNIYSSAQLWD 730 (882)
Q Consensus 658 r~g~~~eA~~~~~~m-~~~p~~~~~~~~l--l~a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~ 730 (882)
.+|-+++|++.-++. +++|.+ .|.+- .-.....|+..+|.+..++--..-.+ -+-.|-..+-.|...+.++
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D--~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFD--CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HhccchhHHHHHHhhccCCCcc--hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 899999999988875 444443 57654 44566777888888887654332211 1234556666788889999
Q ss_pred HHHHHHHHHHhCCCccCCc
Q 002772 731 KAMDVRKKMKEMGVRKEPG 749 (882)
Q Consensus 731 ~a~~~~~~m~~~g~~~~~~ 749 (882)
.|+++++.=.-+...|+.+
T Consensus 265 ~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 265 KALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHHHHHhhccch
Confidence 9999998755555555555
No 251
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.43 E-value=4.7 Score=38.49 Aligned_cols=178 Identities=16% Similarity=0.108 Sum_probs=96.3
Q ss_pred cCCHHHHHHHHhhCC--CCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHH
Q 002772 552 CGCLNFARRVFDLMP--VRN-VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVS 627 (882)
Q Consensus 552 ~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~ 627 (882)
.|-..-|+.-|.+.. .|+ ...||-+.--+...|+++.|.+.|+...+.+ |. ..++..-.-++--.|++.
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-------p~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-------CcchHHHhccceeeeecCchH
Confidence 344444554454433 333 3556667667777788888888888777743 43 333333333344567777
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHH-HhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 002772 628 EGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLI-NMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLF 706 (882)
Q Consensus 628 ~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~-~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 706 (882)
-|.+-|...-.. .|+..--+..+-+--+.-+..+|..-+ ++.. ..+.. -|+.-+-.+....--+ +..++++.
T Consensus 151 LAq~d~~~fYQ~---D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~-~~d~e-~WG~~iV~~yLgkiS~--e~l~~~~~ 223 (297)
T COG4785 151 LAQDDLLAFYQD---DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE-KSDKE-QWGWNIVEFYLGKISE--ETLMERLK 223 (297)
T ss_pred hhHHHHHHHHhc---CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH-hccHh-hhhHHHHHHHHhhccH--HHHHHHHH
Confidence 776655554332 333222222222222333455565433 3321 23333 7777665554332111 12233333
Q ss_pred cCCCCC-------CchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 707 LLEPDV-------ASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 707 ~l~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
+...++ ..+|..|+.-|...|..++|..+++.....+
T Consensus 224 a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 224 ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 332222 3578899999999999999999999766543
No 252
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.38 E-value=18 Score=38.80 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=81.5
Q ss_pred HHHhcCC-HHHHHHHHhhCC---CCChhhHHHHHH----HHHcc---CChhHHHHHHHHHHHcCCCCCcccCChh----H
Q 002772 548 MYAKCGC-LNFARRVFDLMP---VRNVITWNVIIM----AYGMH---GEGQEVLELLKNMVAEGSRGGEVKPNEV----T 612 (882)
Q Consensus 548 ~y~k~g~-~~~A~~~~~~m~---~~~~~~~~~li~----~~~~~---g~~~~A~~l~~~m~~~g~~~~~~~pd~~----t 612 (882)
-|-+.|. -+.|.++++.+. .-|..+-|.... +|.+. ....+-+.+=+-..+.| +.|-.+ .
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g-----l~~i~i~e~ei 462 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG-----LTPITISEEEI 462 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-----CCcccccHHHH
Confidence 3445555 677888887765 456655554322 23221 12344444444455667 666433 2
Q ss_pred HHHHHHH--HhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHH
Q 002772 613 FIALFAA--CSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSL 685 (882)
Q Consensus 613 ~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~l 685 (882)
-+.|..| +-..|++.++.-+-.-.. .+.|++.+|..+.-.+....+++||.+++...| |+.. +|++-
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~-~~dsk 531 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNER-MRDSK 531 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--Cchh-hHHHH
Confidence 3444443 456788888876544443 678999999999999999999999999999986 4555 66653
No 253
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.30 E-value=1 Score=44.48 Aligned_cols=110 Identities=14% Similarity=0.191 Sum_probs=84.8
Q ss_pred HHHHHHhhCC--CCChhhHHHHHHHHHcc-----CChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccC-----
Q 002772 557 FARRVFDLMP--VRNVITWNVIIMAYGMH-----GEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSG----- 624 (882)
Q Consensus 557 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g----- 624 (882)
..++.|.... ++|-.+|-+++..|..+ +..+=....++.|.+-| +.-|..+|..||+.+=+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyG-----VerDl~vYk~LlnvfPKgkfiP~n 126 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYG-----VERDLDVYKGLLNVFPKGKFIPQN 126 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhc-----chhhHHHHHHHHHhCcccccccHH
Confidence 3456677776 77888999998888653 55666777889999999 9999999999998765533
Q ss_pred -----------CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHH-HHHHHHHhC
Q 002772 625 -----------MVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVE-DAYQLINMM 672 (882)
Q Consensus 625 -----------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~-eA~~~~~~m 672 (882)
+-+=++.++++|.. +|+.||.++-..|+++++|.|..- +...+.--|
T Consensus 127 vfQ~~F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 127 VFQKVFLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 22347889999988 599999999999999999998753 344444444
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.26 E-value=3.5 Score=44.63 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=94.1
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCC
Q 002772 582 MHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGK 661 (882)
Q Consensus 582 ~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~ 661 (882)
+..+.+.-+++-++.++ +.||-.+-..++ +-..+..+.++.++|++..+. |- ..|++...
T Consensus 180 RERnp~aRIkaA~eALe-------i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE-----------~~lg~s~~ 239 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE-------INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE-----------ASLGKSQF 239 (539)
T ss_pred hcCCHHHHHHHHHHHHH-------hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH-----------Hhhchhhh
Confidence 44566777777788877 568866544444 223455688999999887764 11 01111111
Q ss_pred HH---HHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC--CCchHHHHHHHHHHcCCchHHHHHH
Q 002772 662 VE---DAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD--VASHYVLLSNIYSSAQLWDKAMDVR 736 (882)
Q Consensus 662 ~~---eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~ 736 (882)
.+ ...+.+..-..+|-.. +-..|...+++.|+.++|.+.++.+++..|. +..++..|.+.|...+++.|+..++
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y-~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVY-AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhcccchhhhhhccccchhhh-hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 11 1111111111122223 4456778888999999999999999987764 4567788899999999999999998
Q ss_pred HHHHhCCCccCCceeE
Q 002772 737 KKMKEMGVRKEPGCSW 752 (882)
Q Consensus 737 ~~m~~~g~~~~~~~s~ 752 (882)
.+-.+....|....+|
T Consensus 319 ~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 319 AKYDDISLPKSATICY 334 (539)
T ss_pred HHhccccCCchHHHHH
Confidence 8866554545444443
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.11 E-value=1.2 Score=44.39 Aligned_cols=97 Identities=18% Similarity=0.255 Sum_probs=64.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYA 650 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 650 (882)
.|+.-+.. .+.|++.+|.+.|...++.. +.+...| ..+-.|..++...|++++|..+|..+.+.|+-.|. ++.+-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~--nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTP--NAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccc--hhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 35554444 45677999999999988865 1111222 23556777888888888888888888887655554 36666
Q ss_pred HHHHHhhccCCHHHHHHHHHhC
Q 002772 651 CVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 651 ~li~~l~r~g~~~eA~~~~~~m 672 (882)
-|...+.+.|+.++|...+++.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHH
Confidence 6666666777777766666554
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=91.90 E-value=0.8 Score=41.94 Aligned_cols=84 Identities=11% Similarity=-0.025 Sum_probs=59.4
Q ss_pred HHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCC
Q 002772 549 YAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGM 625 (882)
Q Consensus 549 y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~ 625 (882)
+...|++++|..+|.-+. .-|..-|..|...+-..+++++|+..|......+ .-|...+-....++...|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~------~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL------KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------cCCCCccchHHHHHHHhCC
Confidence 346788888888887654 3456667777777778888888888888776644 2334445556666777788
Q ss_pred HHHHHHHHHHhHH
Q 002772 626 VSEGMDLFYKMKD 638 (882)
Q Consensus 626 ~~~a~~~~~~m~~ 638 (882)
.+.|+..|+....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877765
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.87 E-value=0.9 Score=39.28 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=16.2
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 687 GACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 687 ~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
..|+..|+.+.|..-|+.+-++....
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 44666777777777766666555443
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.82 E-value=1.2 Score=44.26 Aligned_cols=102 Identities=19% Similarity=0.160 Sum_probs=68.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC----CCCCCchhhHHHHH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM----PPEFDKAGAWSSLL 686 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~~ll 686 (882)
.|+.-+.. .+.|++.+|..-|...++.|.-.+ ....+--|...+...|++++|...|..+ |..|..++.+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35555544 456789999999999988642211 2445666788888888888887776654 44455554555566
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 002772 687 GACRIHQNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 687 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
......|+.+.|...++++.+--|+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6667777777777777777777776544
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.79 E-value=1.9 Score=44.23 Aligned_cols=215 Identities=10% Similarity=0.012 Sum_probs=134.5
Q ss_pred chHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhcCCHHHHHHHHh-hCC------C--CChhhHHHHHHHHHccCCh
Q 002772 518 SALAKGKEIHAYAIRN--MLATDVVVGSALVDMYAKCGCLNFARRVFD-LMP------V--RNVITWNVIIMAYGMHGEG 586 (882)
Q Consensus 518 ~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~y~k~g~~~~A~~~~~-~m~------~--~~~~~~~~li~~~~~~g~~ 586 (882)
.+.+++.+.+...... ....-..++..+.++.++.|.++++...-- .|. + .-..+|-.+..++.+.-++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555443321 112234466778888888888887765422 221 1 1134566677777777777
Q ss_pred hHHHHHHHHHHHc-CCCCCcccCCh---hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-----CChhHHHHHHHHhh
Q 002772 587 QEVLELLKNMVAE-GSRGGEVKPNE---VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIE-----PSPDHYACVVDLLG 657 (882)
Q Consensus 587 ~~A~~l~~~m~~~-g~~~~~~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-----p~~~~~~~li~~l~ 657 (882)
.+++.+-+.-... | ..|.. ....++..|....+.++++++.|+...+- ... ....+|..|...|+
T Consensus 100 ~kt~~y~k~~l~lpg-----t~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~-A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPG-----TRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY-AHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred hhHHHHHHHHhcCCC-----CCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH-hhccCCceeeeehhhhHHHHHH
Confidence 7777766554432 2 23311 22334555666666799999999988753 222 13567899999999
Q ss_pred ccCCHHHHHHHHHhC-------CCCCCch----hhHHHHHHHHHhcCchhHHHHHHHHHhcC--CCCCCch----HHHHH
Q 002772 658 RAGKVEDAYQLINMM-------PPEFDKA----GAWSSLLGACRIHQNVEIGEIAAQNLFLL--EPDVASH----YVLLS 720 (882)
Q Consensus 658 r~g~~~eA~~~~~~m-------~~~p~~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~l--~p~~~~~----~~~l~ 720 (882)
+..++++|.-+..+. ..+.-.. -+...|..+++..|.+-.|.+..+++.++ ...|..+ ...++
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999999987665543 2111111 03445667899999999999998887775 3444444 44789
Q ss_pred HHHHHcCCchHHHHHHHH
Q 002772 721 NIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 721 ~~y~~~g~~~~a~~~~~~ 738 (882)
+||...|+.|.|.+-++.
T Consensus 254 DIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHhcccHhHHHHHHHH
Confidence 999999998887766554
No 260
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.73 E-value=7.9 Score=35.02 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHH
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMPV---RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFA 618 (882)
Q Consensus 542 ~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~ 618 (882)
...++..+.+.+........++.+.. .+....|.+|..|++.+ ..+.++.++. .++......++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~-----------~~~~yd~~~~~~ 77 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN-----------KSNHYDIEKVGK 77 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh-----------ccccCCHHHHHH
Confidence 34566677777777777777776652 34556677777777653 2334444431 123344455667
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhcc-CCHHHHHHHHHhCCCCCCchhhHHHHHHHHH
Q 002772 619 ACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRA-GKVEDAYQLINMMPPEFDKAGAWSSLLGACR 690 (882)
Q Consensus 619 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~-g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~ 690 (882)
.|.+.+.++++..++..+.. |...++.+... ++.+.|.+++++- +++..|..++..|.
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~----~~~~lw~~~~~~~l 136 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ----NNPELWAEVLKALL 136 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC----CCHHHHHHHHHHHH
Confidence 77777777777777766532 23334444433 6677777776652 12226666665553
No 261
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.22 E-value=0.94 Score=45.88 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=68.8
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCcccC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 002772 578 MAYGMHGEGQEVLELLKNMVAEGSRGGEVKP-NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLL 656 (882)
Q Consensus 578 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l 656 (882)
+-|.++|++++|++.|.+.+. +.| |.+++..-..+|.+...+..|..-.+..... -...+.+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia-------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAY 168 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA-------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAY 168 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc-------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHH
Confidence 456778888888888888777 446 7888888888888777776665554444321 11223333
Q ss_pred hccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHH
Q 002772 657 GRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKA 732 (882)
Q Consensus 657 ~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 732 (882)
.| -..|-...|+.++|.+-++.+++++|++ ..|-..|+......|+
T Consensus 169 SR--------------------------R~~AR~~Lg~~~EAKkD~E~vL~LEP~~----~ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 169 SR--------------------------RMQARESLGNNMEAKKDCETVLALEPKN----IELKKSLARINSLRER 214 (536)
T ss_pred HH--------------------------HHHHHHHHhhHHHHHHhHHHHHhhCccc----HHHHHHHHHhcchHhh
Confidence 33 3334444567778888888899999974 3344555554444443
No 262
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.18 E-value=7.2 Score=41.46 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=42.6
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC---Ceee----HHHHHHHHHh---cCCHHHHHHHHHHHhhhhhhhhcccccccccc
Q 002772 427 LMDMYSRMGRIEISKTIFDDMEVR---DTVS----WNTMITGYTI---CGQHGDALMLLREMQNMEEEKNRNNVYDLDET 496 (882)
Q Consensus 427 Li~~y~~~g~~~~A~~~~~~m~~~---~~~~----~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 496 (882)
|+-.|-...+++...++.+.+... +... -....-++.+ .|+.++|++++..+.. .
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~---~------------ 211 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE---S------------ 211 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh---c------------
Confidence 444577777777777777777633 1111 1123335555 7889999999988655 3
Q ss_pred ccCCCCCcchHhhHHHh
Q 002772 497 VLRPKPNSITLMTVLPG 513 (882)
Q Consensus 497 ~~~~~p~~~t~~~ll~a 513 (882)
...++..|+..+...
T Consensus 212 --~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 212 --DENPDPDTLGLLGRI 226 (374)
T ss_pred --cCCCChHHHHHHHHH
Confidence 455666666555443
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.17 E-value=0.31 Score=33.76 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=25.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHH
Q 002772 648 HYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLL 686 (882)
Q Consensus 648 ~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll 686 (882)
.+..+...|.+.|++++|.+++++. ...|++..+|..|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4556666777777777777777665 34677766666554
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.10 E-value=15 Score=36.55 Aligned_cols=170 Identities=16% Similarity=0.117 Sum_probs=96.3
Q ss_pred HhcCCHHHHHHHHhhCCC--C-C---hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhc-
Q 002772 550 AKCGCLNFARRVFDLMPV--R-N---VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSH- 622 (882)
Q Consensus 550 ~k~g~~~~A~~~~~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~- 622 (882)
.+.|++++|.+.|+.+.. | + ..+--.++-++-+.+++++|+..+++.+... |-.|| +-|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----P~~~n-~dY~~YlkgLs~~ 119 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----PTHPN-ADYAYYLKGLSYF 119 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----CCCCC-hhHHHHHHHHHHh
Confidence 356899999999988872 2 2 2233345667778899999999999988854 02333 234444444332
Q ss_pred --c----CCH---HHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcC
Q 002772 623 --S----GMV---SEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 623 --~----g~~---~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~ 693 (882)
. .+. .+|..-|+..+.+| |+ ..-..+|..-+...... -..-=.+...-|.++|
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~d~--LA~~Em~IaryY~kr~ 181 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLNDA--LAGHEMAIARYYLKRG 181 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 1 222 23333333333332 22 22222332222221000 0001123455677777
Q ss_pred chhHHHHHHHHHhcCCCCCCc---hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 694 NVEIGEIAAQNLFLLEPDVAS---HYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
...-|..-++.+++--|+.+. .+..|.++|...|..++|.+..+-+...
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 777777777888877665544 3556667888889888888887766554
No 265
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.33 E-value=39 Score=38.78 Aligned_cols=114 Identities=12% Similarity=0.050 Sum_probs=88.0
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHH
Q 002772 608 PNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLG 687 (882)
Q Consensus 608 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~ 687 (882)
-...|.+--+.-+...|...+|.++-.+.+ .||...|-.=+.+|+..+++++-+++-+++.. .. -+.-+..
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PI-Gy~PFVe 752 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PI-GYLPFVE 752 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CC-CchhHHH
Confidence 334456666777888899999988876654 38888888889999999999999999888742 23 5777889
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 688 ACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 688 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
+|...||.++|.+.+-+.-.+ .-...+|.+.|++.+|.++--+
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 999999999988886543222 2577889999999999876543
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.10 E-value=7.8 Score=33.91 Aligned_cols=62 Identities=11% Similarity=0.209 Sum_probs=38.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 002772 574 NVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGI 642 (882)
Q Consensus 574 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 642 (882)
..-+......|+-++-.++++++...+ +|++.....+.+||.+.|...++.+++.++.++ |+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~------~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE------EINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-----------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc------CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 344556666777777777777766533 677777777778888888888888888777775 54
No 267
>PRK12798 chemotaxis protein; Reviewed
Probab=89.72 E-value=32 Score=36.87 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=124.4
Q ss_pred HHHHHHHHh--cCCHHHHHHHHhhCC----CCChhhHHHHHHHHH-ccCChhHHHHHHHHHHHcCCCCCcccCCh----h
Q 002772 543 SALVDMYAK--CGCLNFARRVFDLMP----VRNVITWNVIIMAYG-MHGEGQEVLELLKNMVAEGSRGGEVKPNE----V 611 (882)
Q Consensus 543 ~~li~~y~k--~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~~~~~~pd~----~ 611 (882)
+.|+++..+ .|+.++|.+.+..+. .+....|-+|+.+-. ...+..+|+++|++..- .-|.. .
T Consensus 114 ~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL-------laPGTLvEEA 186 (421)
T PRK12798 114 QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL-------LAPGTLVEEA 186 (421)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH-------hCCchHHHHH
Confidence 344444332 699999999999987 455667778877644 45689999999999877 34643 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHH-HHHHhh---ccCCHHHHHHHHHhCCCCCCchhhHHHHHH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYAC-VVDLLG---RAGKVEDAYQLINMMPPEFDKAGAWSSLLG 687 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-li~~l~---r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~ 687 (882)
....-+......|+.+++..+-.....+|...|=...|.. ++..+. ..-..+.-.+++..|.-.-... +|-.+..
T Consensus 187 ALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~-lYL~iAR 265 (421)
T PRK12798 187 ALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRE-LYLRIAR 265 (421)
T ss_pred HHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHH-HHHHHHH
Confidence 3444455667889999999888888887777775444332 233333 3334455556677775333333 8888888
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHc-----CCchHHHHHHH
Q 002772 688 ACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSA-----QLWDKAMDVRK 737 (882)
Q Consensus 688 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-----g~~~~a~~~~~ 737 (882)
.-.+.|+.+.|..+.++++.+.+. ...-...+++|... ...+++.+.+.
T Consensus 266 ~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 266 AALIDGKTELARFASERALKLADP-DSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred HHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 889999999999999999999743 33344455555443 33445554444
No 268
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.47 E-value=40 Score=37.70 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=125.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHH
Q 002772 538 DVVVGSALVDMYAKCGCLNFARRVFDLMPVRN---VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFI 614 (882)
Q Consensus 538 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~ 614 (882)
+..+|+..++--.+.|+.+.+..+|++...|- ...|--.+.-.-..|+.+-|-.++....+-- ++-...+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-----~k~~~~i~L 370 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-----VKKTPIIHL 370 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-----CCCCcHHHH
Confidence 56678888888888999999999998876442 2344444444444488888887777766643 222233322
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHH---HHHHhCC-CCCCchhhHHHHHH--
Q 002772 615 ALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAY---QLINMMP-PEFDKAGAWSSLLG-- 687 (882)
Q Consensus 615 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~---~~~~~m~-~~p~~~~~~~~ll~-- 687 (882)
.-..-+-..|+.+.|..+++...+.+ |+ ...-..-+...-|.|..+.+. +++.... ..-+.. +...+.-
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~-i~~~l~~~~ 446 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG-ILEKLYVKF 446 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc-hhHHHHHHH
Confidence 22233567789999999999999863 65 333344567778889999888 6665442 222222 3333332
Q ss_pred ---HHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCc
Q 002772 688 ---ACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLW 729 (882)
Q Consensus 688 ---a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 729 (882)
-+...++.+.|..++.++.+..|++-..|..+.++....+..
T Consensus 447 ~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 447 ARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 245677899999999999999999999999999988877643
No 269
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.40 E-value=0.34 Score=44.31 Aligned_cols=130 Identities=11% Similarity=0.072 Sum_probs=85.7
Q ss_pred hhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCCh
Q 002772 287 ASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYD 366 (882)
Q Consensus 287 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 366 (882)
..++..+.+.+.......+++.+.+.+ ...+..+.+.|+..|++.+..+...++++.... .-...++..+.+.|.+
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 345667777778888888888888776 567788999999999999888888888884433 4456778888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 002772 367 EEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGR 436 (882)
Q Consensus 367 ~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 436 (882)
++|.-+|.++ ... ...+..+...++++.|.++... ..+..+|..+++.+...+.
T Consensus 87 ~~a~~Ly~~~-~~~---------~~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 87 EEAVYLYSKL-GNH---------DEALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHCC-TTH---------TTCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHc-ccH---------HHHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 9999888777 211 1111123344555555533322 2345666666666655443
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.39 E-value=23 Score=34.77 Aligned_cols=207 Identities=12% Similarity=0.039 Sum_probs=110.0
Q ss_pred CCCCCcch----HhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhh
Q 002772 499 RPKPNSIT----LMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRN--VIT 572 (882)
Q Consensus 499 ~~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~--~~~ 572 (882)
..+||... |--.-.++-...++++++..+..+.+. ...+...|.+ ...++.|.-+.++|..-+ +..
T Consensus 22 ~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl 93 (308)
T KOG1585|consen 22 RWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDL 93 (308)
T ss_pred ccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHH
Confidence 46677543 333445667778888888766665532 1222222211 223444444444444221 234
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc--CCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC----CCCh
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAE--GSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGI----EPSP 646 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~----~p~~ 646 (882)
|+--...|..+|..+-|-..+++.-+. + ++|+ +|+++|++....... .--.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~len-----v~Pd------------------~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKALEN-----VKPD------------------DALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhc-----CCHH------------------HHHHHHHHHHHHHhccchHHHHH
Confidence 555667788888777666666654321 2 4454 344444333322111 1123
Q ss_pred hHHHHHHHHhhccCCHHHHHHHHHhCC-------CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcC----CCCCCch
Q 002772 647 DHYACVVDLLGRAGKVEDAYQLINMMP-------PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLL----EPDVASH 715 (882)
Q Consensus 647 ~~~~~li~~l~r~g~~~eA~~~~~~m~-------~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l----~p~~~~~ 715 (882)
+.|.....+|.|..+++||-..+.+-. .-|+.-..+-+.+-.+.-..|...|++.++.-.++ .|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 345556677888888888877665431 11222112333344444455778888888775553 4666666
Q ss_pred HHHHHHHHHHcCCchHHHHHHH
Q 002772 716 YVLLSNIYSSAQLWDKAMDVRK 737 (882)
Q Consensus 716 ~~~l~~~y~~~g~~~~a~~~~~ 737 (882)
...|...| ..|+.+++.++..
T Consensus 231 lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHHc
Confidence 66666665 4566677766544
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.07 E-value=17 Score=40.82 Aligned_cols=86 Identities=20% Similarity=0.169 Sum_probs=56.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC-------CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHH
Q 002772 546 VDMYAKCGCLNFARRVFDLMPV-------RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFA 618 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~ 618 (882)
..++...|++++|.+.|++... -....+--+.-.+...+++++|.+.|.++.+.. +-...+|.-+..
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s------~WSka~Y~Y~~a 347 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES------KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc------ccHHHHHHHHHH
Confidence 4566778888888888886541 122334445566777899999999999999865 334444444444
Q ss_pred HH-hccCCH-------HHHHHHHHHhH
Q 002772 619 AC-SHSGMV-------SEGMDLFYKMK 637 (882)
Q Consensus 619 a~-~~~g~~-------~~a~~~~~~m~ 637 (882)
+| ...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 43 445666 66666666554
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.04 E-value=0.59 Score=30.67 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 715 HYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 715 ~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
+|..|+++|.+.|+|++|.+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3678999999999999999999984
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.01 E-value=10 Score=34.77 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=64.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHhhccCCHHHHHHHHHhCCCC-CCchhhHHHHHHHHHhcC
Q 002772 616 LFAACSHSGMVSEGMDLFYKMKDDYGIEPSP-DHYACVVDLLGRAGKVEDAYQLINMMPPE-FDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 616 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~l~r~g~~~eA~~~~~~m~~~-p~~~~~~~~ll~a~~~~~ 693 (882)
+++.-...++.+++..++..+.- +.|.. .+-..-...+.+.|++.+|..+++++... |..+ .-.+|+..|....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p-~~kALlA~CL~~~ 91 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP-YAKALLALCLYAL 91 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHHc
Confidence 34445677899999999999874 46653 33344456678999999999999998544 4344 6678888776665
Q ss_pred chhHHHHHHHHHhcCCCC
Q 002772 694 NVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~ 711 (882)
.-..=...++.+++-.|+
T Consensus 92 ~D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGAD 109 (160)
T ss_pred CChHHHHHHHHHHhcCCC
Confidence 544555666777777663
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.33 E-value=0.54 Score=30.19 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 711 (882)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777777777777777777777777774
No 275
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.23 E-value=58 Score=37.99 Aligned_cols=210 Identities=10% Similarity=0.030 Sum_probs=84.7
Q ss_pred HHHHHHHhcCChhHHHHHHhcCC---CCCcccHHHHHHHHHcCCC-------hHHHHHHHHHHHHCCCCCChh--hHhhH
Q 002772 222 ALMAMYAKLGRVDDAKTLFKSFE---DRDLVSWNTIVSSLSQNDK-------FLEAVMFLRQMALRGIKPDGV--SIASV 289 (882)
Q Consensus 222 ~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~--t~~~l 289 (882)
++|--+.|||++++|.++..+.. ++....+-..+..|+.+.+ -++...-|++..+.....|.+ ..-.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 35556778999999999883333 2344566777777776533 234555566655543333443 22222
Q ss_pred HHHhccCC-C-------hhHHHHHHHHHHHhCCCCC-----chhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHH
Q 002772 290 LPACSHLE-M-------LDTGKEIHAYALRNDILID-----NSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAM 356 (882)
Q Consensus 290 l~a~~~~~-~-------~~~a~~~~~~~~~~g~~~~-----~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 356 (882)
|..|--.. . ++.=..+.-.+++.. ... +..++..|-+...+-| .+.|.. ..+... .
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~-~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~---Y 264 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVRED-ERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLL---Y 264 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---T-TSSSSSSS----HHHHHHHHHHH------GGGCTT-----------H
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccC-CCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHH---H
Confidence 32222211 1 122222222222222 111 1122222211111111 111222 112222 2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhC-CCCchHHHHHHHHHHHh--
Q 002772 357 ITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLG-LGRDRYVQNALMDMYSR-- 433 (882)
Q Consensus 357 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~~-- 433 (882)
...+.-.|+++.|++.+.+. .+...|.+.+...+.-+.-..-.+... ..+.... -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN---EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHhh---ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34455679999999988663 455667777776666553322221111 2111111 01111445667777765
Q ss_pred -cCChHHHHHHHhhCC
Q 002772 434 -MGRIEISKTIFDDME 448 (882)
Q Consensus 434 -~g~~~~A~~~~~~m~ 448 (882)
..+..+|...|--+.
T Consensus 339 ~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 339 EITDPREALQYLYLIC 354 (613)
T ss_dssp TTT-HHHHHHHHHGGG
T ss_pred hccCHHHHHHHHHHHH
Confidence 456677777776554
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.04 E-value=9.6 Score=39.52 Aligned_cols=130 Identities=12% Similarity=0.202 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh--c----CCHHHHHHHHhhCC-------CCChhhHHHHHHHHHccCC
Q 002772 519 ALAKGKEIHAYAIRNMLATDVVVGSALVDMYAK--C----GCLNFARRVFDLMP-------VRNVITWNVIIMAYGMHGE 585 (882)
Q Consensus 519 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k--~----g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~ 585 (882)
.++....+++.+.+.|+.-+.++|-+-.-.... . -....|..+|+.|. .++-..+..|+.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 467778899999999999888777663333333 2 23567899999997 3455666666554 2222
Q ss_pred ----hhHHHHHHHHHHHcCCCCCcccCC-hhHHH-HHHHHHhccCC--HHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 002772 586 ----GQEVLELLKNMVAEGSRGGEVKPN-EVTFI-ALFAACSHSGM--VSEGMDLFYKMKDDYGIEPSPDHYACVVDLL 656 (882)
Q Consensus 586 ----~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~-~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l 656 (882)
.+++..+|+.+...| +..+ ..-+. .++..+..... +.++.++++.+.+. |+++...+|..+.-+-
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~-----f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAG-----FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHhC-----CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 466788899999988 5554 33343 44443332222 55888999999987 9999999988775443
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.75 E-value=0.95 Score=29.67 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=19.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHH
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 598 (882)
+|+.|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777888888888888888888553
No 278
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.63 E-value=0.3 Score=44.66 Aligned_cols=88 Identities=13% Similarity=0.128 Sum_probs=69.6
Q ss_pred hhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHH
Q 002772 390 SSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHG 469 (882)
Q Consensus 390 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 469 (882)
..++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.++..++++... ..-...++..+.+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHH
Confidence 34677777888899999999999988877889999999999999998888888888433 244567788888888888
Q ss_pred HHHHHHHHHhh
Q 002772 470 DALMLLREMQN 480 (882)
Q Consensus 470 ~A~~~~~~m~~ 480 (882)
+|.-++.++..
T Consensus 88 ~a~~Ly~~~~~ 98 (143)
T PF00637_consen 88 EAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHccc
Confidence 88888888754
No 279
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.25 E-value=46 Score=35.74 Aligned_cols=79 Identities=6% Similarity=0.064 Sum_probs=56.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhH
Q 002772 39 TRCKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANT 118 (882)
Q Consensus 39 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 118 (882)
..|..+|..|+..|-.++..++..+++++|... ++--+..|..-+.+-....+++....++.+-++..+. ..+|..
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~---ldLW~l 114 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN---LDLWML 114 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc---HhHHHH
Confidence 446779999999999999999999999999763 1223345655565555567788888888888776644 445554
Q ss_pred HHH
Q 002772 119 LVN 121 (882)
Q Consensus 119 li~ 121 (882)
-+.
T Consensus 115 Yl~ 117 (660)
T COG5107 115 YLE 117 (660)
T ss_pred HHH
Confidence 444
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.07 E-value=47 Score=35.59 Aligned_cols=149 Identities=12% Similarity=-0.024 Sum_probs=83.1
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC---ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 002772 567 VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP---NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIE 643 (882)
Q Consensus 567 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 643 (882)
.....+|..++..+.+.|+++.|...+.++...+ ..+ +......-...+-..|+-++|...++..... .+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~-----~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~ 216 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLN-----PSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLS 216 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC-----CcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhh
Confidence 3456678889999999999999999999988744 111 2233334455556678889999888887762 121
Q ss_pred CC--hhHHHHHHHHhhccCCHHHHHHH-HHhCCCCCCchhhHHHHHHHHHhc------CchhHHHHHHHHHhcCCCCCCc
Q 002772 644 PS--PDHYACVVDLLGRAGKVEDAYQL-INMMPPEFDKAGAWSSLLGACRIH------QNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 644 p~--~~~~~~li~~l~r~g~~~eA~~~-~~~m~~~p~~~~~~~~ll~a~~~~------~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
.. ......+...+.. ..+..... .... .......++..+..-+... ++.+.+...++.+.++.|....
T Consensus 217 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 217 KNIDSISNAELKSGLLE--SLEVISSTNLDKE-SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred hccccccHHHHhhcccc--ccccccccchhhh-hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 11 1111111111100 00000000 0000 0000000333333333333 6788899999999999998888
Q ss_pred hHHHHHHHHH
Q 002772 715 HYVLLSNIYS 724 (882)
Q Consensus 715 ~~~~l~~~y~ 724 (882)
.|..++..+.
T Consensus 294 ~~~~~a~~~~ 303 (352)
T PF02259_consen 294 AWHSWALFND 303 (352)
T ss_pred HHHHHHHHHH
Confidence 8877777664
No 281
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.91 E-value=3.4 Score=38.86 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 682 WSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 682 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+..-..+..+.+..+.|...+-+++++.|.+..+..--+.+|.+..++++|++-++++.+.
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3333445566677788888888888888877777777778888888888888888877664
No 282
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=86.72 E-value=23 Score=39.76 Aligned_cols=161 Identities=12% Similarity=0.100 Sum_probs=106.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh-----hHHHHHHHHH-hc---cCCHHHHHHHHHHhHHhcCCCC
Q 002772 574 NVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE-----VTFIALFAAC-SH---SGMVSEGMDLFYKMKDDYGIEP 644 (882)
Q Consensus 574 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~-----~t~~~ll~a~-~~---~g~~~~a~~~~~~m~~~~~~~p 644 (882)
..++....-.|+-+.+++++.+..+.+. +.-.. ..|..++..+ .. ....+.+.++++.+.+. -|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~----i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP 264 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSEN----IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YP 264 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCC----cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CC
Confidence 3455556667888888888887665431 21111 1244444433 22 45688899999999876 36
Q ss_pred ChhHHHHH-HHHhhccCCHHHHHHHHHhCCC-C-----CCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHH
Q 002772 645 SPDHYACV-VDLLGRAGKVEDAYQLINMMPP-E-----FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYV 717 (882)
Q Consensus 645 ~~~~~~~l-i~~l~r~g~~~eA~~~~~~m~~-~-----p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 717 (882)
+...|... ...+...|++++|.+.+++.-. + -... .+--+.+.+...++.+.|...+.++.+.+.-....|.
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l-~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~ 343 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL-CYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA 343 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH-HHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence 65555433 4566778999999999986521 1 1111 3444566777889999999999999998766555544
Q ss_pred -HHHHHHHHcCCc-------hHHHHHHHHHHhC
Q 002772 718 -LLSNIYSSAQLW-------DKAMDVRKKMKEM 742 (882)
Q Consensus 718 -~l~~~y~~~g~~-------~~a~~~~~~m~~~ 742 (882)
..+-.|...|+. ++|.+++.+....
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 566678888888 7888887776543
No 283
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.61 E-value=12 Score=34.83 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 002772 695 VEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKE 747 (882)
Q Consensus 695 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~ 747 (882)
++.|...|+++...+|++..+...|--. ++|-++..++.+++....
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHhhhh
Confidence 5678888999999999887665554322 467777777777765433
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.49 E-value=1.3 Score=28.38 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 002772 571 ITWNVIIMAYGMHGEGQEVLELLKNMVAE 599 (882)
Q Consensus 571 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 599 (882)
.+|..+...|...|++++|++.|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46778888888888899999998888883
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.32 E-value=38 Score=33.77 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=88.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCcccC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 002772 576 IIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP-NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVD 654 (882)
Q Consensus 576 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 654 (882)
=+..-.+.|++++|.+.|+.+.... + ..| ...+...++-++-+.+++++|+..+++..+.|+-.|+.. |...+.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~-p---~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRH-P---FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-C---CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 3444567899999999999998754 1 112 245667777888899999999999999998877777754 444444
Q ss_pred HhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC-----------------CchHH
Q 002772 655 LLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV-----------------ASHYV 717 (882)
Q Consensus 655 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-----------------~~~~~ 717 (882)
+++. +...+. ++. -..-...|...++.++.--|+. .+.-.
T Consensus 115 gLs~----------~~~i~~-~~r------------Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 115 GLSY----------FFQIDD-VTR------------DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred HHHH----------hccCCc-ccc------------CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 4441 111110 000 0001122333333444444432 23345
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 718 LLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 718 ~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
.+++.|.+.|.|.-|..-++.|.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc
Confidence 7888999999999999988888776
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.31 E-value=27 Score=37.48 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=54.9
Q ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHhcCCC----CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 678 KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEP----DVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 678 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p----~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
....|..++..|+++|+++.|..++.++....+ ..+.....-+++....|+-++|...++.....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333899999999999999999999999998763 24677778899999999999999988877663
No 287
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.23 E-value=6.1 Score=43.60 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhc
Q 002772 455 WNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNM 534 (882)
Q Consensus 455 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 534 (882)
.+.++.-+.+.|.++.|+++-.+-.. . ..-..+.|+++.|.++...
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~---r--------------------------FeLAl~lg~L~~A~~~a~~----- 343 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH---R--------------------------FELALQLGNLDIALEIAKE----- 343 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH---H--------------------------HHHHHHCT-HHHHHHHCCC-----
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH---H--------------------------hHHHHhcCCHHHHHHHHHh-----
Confidence 55666666667777777766444322 1 1122234444444444321
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 002772 535 LATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEG 600 (882)
Q Consensus 535 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 600 (882)
..+...|..|.+...++|+++-|++.|.+.. -|..|.-.|...|+.+.-.++.+.....|
T Consensus 344 -~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 344 -LDDPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp -CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred -cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 2245566666666666666666666666654 24455555556666655555555555444
No 288
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.16 E-value=3.5 Score=41.78 Aligned_cols=81 Identities=9% Similarity=0.096 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHH
Q 002772 539 VVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIA 615 (882)
Q Consensus 539 ~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ 615 (882)
..++..++..+..+|+.+.+.+.+++.. +-|...|..+|.+|.+.|+...|+..|+++.+.-....++.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3467788999999999999999999876 5588999999999999999999999999987621111228888776665
Q ss_pred HHHH
Q 002772 616 LFAA 619 (882)
Q Consensus 616 ll~a 619 (882)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 289
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.67 E-value=10 Score=42.87 Aligned_cols=192 Identities=19% Similarity=0.256 Sum_probs=111.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC-cchHhhHHHhhcCcchHHHHHHHHHHHHHh
Q 002772 455 WNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN-SITLMTVLPGCGALSALAKGKEIHAYAIRN 533 (882)
Q Consensus 455 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 533 (882)
-..++-.|-...+++..+++.+.+.. -++.-.+ --.++ .+.|...|+---+-|+-++|..+.--+++.
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~v--------ve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKV--------VETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK 272 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHh---Ccchhhh--------hccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh
Confidence 34556667777788888888888765 1000000 00111 234555666666778888888877666653
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhH-
Q 002772 534 MLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVT- 612 (882)
Q Consensus 534 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t- 612 (882)
.-...+ ++||-||++ |+.|- +-+.|-..+..+.|+++|++.-+ +.|+..+
T Consensus 273 eg~vap-------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe-------veP~~~sG 323 (1226)
T KOG4279|consen 273 EGPVAP-------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE-------VEPLEYSG 323 (1226)
T ss_pred cCCCCC-------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc-------cCchhhcc
Confidence 322111 457777764 33332 11234445566788999999887 6787654
Q ss_pred --HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHH
Q 002772 613 --FIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACR 690 (882)
Q Consensus 613 --~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~ 690 (882)
+..|+.+-.+ .++.-.++ ..- | ..|-.+++|.|.++.-.++++-. ..+.+-.
T Consensus 324 IN~atLL~aaG~--~Fens~El----q~I-g--------mkLn~LlgrKG~leklq~YWdV~-----------~y~~asV 377 (1226)
T KOG4279|consen 324 INLATLLRAAGE--HFENSLEL----QQI-G--------MKLNSLLGRKGALEKLQEYWDVA-----------TYFEASV 377 (1226)
T ss_pred ccHHHHHHHhhh--hccchHHH----HHH-H--------HHHHHHhhccchHHHHHHHHhHH-----------Hhhhhhh
Confidence 4444443322 12222111 110 1 22456788999988877766532 3344555
Q ss_pred hcCchhHHHHHHHHHhcCCCCC
Q 002772 691 IHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 691 ~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
..+|...+..++++++++.|..
T Consensus 378 LAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 378 LANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hccCHHHHHHHHHHHhccCCce
Confidence 5678889999999999999854
No 290
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.43 E-value=11 Score=38.55 Aligned_cols=151 Identities=10% Similarity=0.004 Sum_probs=103.0
Q ss_pred cCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHh---cCCCchhH
Q 002772 465 CGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRN---MLATDVVV 541 (882)
Q Consensus 465 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~---g~~~~~~~ 541 (882)
.|+..+|-..++++++ ..+.|-..+...=.+|...|+.+.-+..+..++.. +++...++
T Consensus 116 ~g~~h~a~~~wdklL~------------------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv 177 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD------------------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYV 177 (491)
T ss_pred cccccHHHHHHHHHHH------------------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHH
Confidence 6888899999999998 68888888888888999999988888888877753 22222333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC---hhHHHH
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMPVR---NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN---EVTFIA 615 (882)
Q Consensus 542 ~~~li~~y~k~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd---~~t~~~ 615 (882)
-..+.-++..||-+++|++.-++..+- |.-+-.+....+-..|+..++.++..+-...- -..+ ...|-.
T Consensus 178 ~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W-----r~s~mlasHNyWH 252 (491)
T KOG2610|consen 178 HGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW-----RQSWMLASHNYWH 252 (491)
T ss_pred HHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccch-----hhhhHHHhhhhHH
Confidence 344445556899999999999887633 44444566777778899999988766533221 0000 111222
Q ss_pred HHHHHhccCCHHHHHHHHHHhHH
Q 002772 616 LFAACSHSGMVSEGMDLFYKMKD 638 (882)
Q Consensus 616 ll~a~~~~g~~~~a~~~~~~m~~ 638 (882)
..-.+...+.++.|+++|+.-.-
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHHH
Confidence 33334556889999999876443
No 291
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.90 E-value=2 Score=31.13 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCch
Q 002772 683 SSLLGACRIHQNVEIGEIAAQNLFLLEPDVASH 715 (882)
Q Consensus 683 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 715 (882)
-.+.-++.+.|+.+.|.+..+.+++++|+|..+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 346678899999999999999999999998543
No 292
>PRK09687 putative lyase; Provisional
Probab=84.65 E-value=52 Score=33.93 Aligned_cols=76 Identities=11% Similarity=0.035 Sum_probs=46.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHH
Q 002772 536 ATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIA 615 (882)
Q Consensus 536 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ 615 (882)
.++..+-..-+.++++.|+.+..-.+.+.+..++ ..-..+.++...|.. +|+..+.++.+.. ||...-..
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~-------~d~~v~~~ 272 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF-------DDNEIITK 272 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC-------CChhHHHH
Confidence 3455566666777777777443333344443444 234567788888875 6888888888744 66665555
Q ss_pred HHHHHh
Q 002772 616 LFAACS 621 (882)
Q Consensus 616 ll~a~~ 621 (882)
.+.+|.
T Consensus 273 a~~a~~ 278 (280)
T PRK09687 273 AIDKLK 278 (280)
T ss_pred HHHHHh
Confidence 555543
No 293
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.28 E-value=33 Score=32.53 Aligned_cols=123 Identities=10% Similarity=0.105 Sum_probs=79.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHH--HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIA--LFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYA 650 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~--ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 650 (882)
|..++.... .+.. +.....+++...+ -+-...++.+ +...+...|++++|..-++..... |..+.+.
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n-----~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk 125 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQAN-----GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLK 125 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhc-----cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHH
Confidence 444444432 2333 5555666666543 1111222222 344577889999999988877642 4444444
Q ss_pred HH-----HHHhhccCCHHHHHHHHHhCCCCCCchhhHHHH-----HHHHHhcCchhHHHHHHHHHhcCCCC
Q 002772 651 CV-----VDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSL-----LGACRIHQNVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 651 ~l-----i~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~l-----l~a~~~~~~~~~a~~~~~~~~~l~p~ 711 (882)
.+ ...+...|.+|+|+..++....+ .|.++ ..++...|+-+.|+..++++++.+++
T Consensus 126 ~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-----~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 126 ALAALRLARVQLQQKKADAALKTLDTIKEE-----SWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccccc-----cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 43 45667889999999999876532 56654 35678889999999999999998754
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.08 E-value=4.6 Score=36.97 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=32.0
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 691 IHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 691 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
.+++.+.++.+++-+--+.|..+..-..-++++...|+|++|.++++.+.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 44455556666666666666666666666666666666666666666654443
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.91 E-value=4 Score=41.42 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
+...++.++...|+.+......+++++++|-+-..|..|...|...|+...|.+.++.++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5566677777778888888888888888888888888888888888888888888888765
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.34 E-value=59 Score=33.54 Aligned_cols=93 Identities=8% Similarity=-0.077 Sum_probs=53.9
Q ss_pred hHhhHHHhhcCcchH---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CC--ChhhHHHHHHH
Q 002772 506 TLMTVLPGCGALSAL---AKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-VR--NVITWNVIIMA 579 (882)
Q Consensus 506 t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~--~~~~~~~li~~ 579 (882)
++..+..++-..+.. +++..+.+.+... +...+.++-.-++.+.+.++.+++.+++.+|. .. ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 444555666555544 4555566555432 22234455455667777888888888888887 22 33455555555
Q ss_pred H---HccCChhHHHHHHHHHHHcC
Q 002772 580 Y---GMHGEGQEVLELLKNMVAEG 600 (882)
Q Consensus 580 ~---~~~g~~~~A~~l~~~m~~~g 600 (882)
+ ..+ ....|...+.+++...
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNR 187 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHH
Confidence 4 332 3456777777776655
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.49 E-value=16 Score=40.59 Aligned_cols=148 Identities=17% Similarity=0.063 Sum_probs=102.3
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh-HHHHHHHHHhccCCHHHH
Q 002772 551 KCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-TFIALFAACSHSGMVSEG 629 (882)
Q Consensus 551 k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a 629 (882)
-.|+++.|..++..+++ ..-+.++.-+-+.|..++|+++ .||.. -|... .+.|+++.|
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~--------------s~D~d~rFela----l~lgrl~iA 656 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL--------------STDPDQRFELA----LKLGRLDIA 656 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc--------------CCChhhhhhhh----hhcCcHHHH
Confidence 45778888887777662 2334566667777877777764 34432 23322 366888888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 002772 630 MDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLE 709 (882)
Q Consensus 630 ~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 709 (882)
.++..+.. +..-|..|.++...+|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+...+-+-.
T Consensus 657 ~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-------d~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 657 FDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR-------DLGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc-------chhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 88765543 45568999999999999999999988764 68888888888888876666655554444
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 710 PDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 710 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
-. +.--..|...|++++.++++..
T Consensus 723 ~~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 723 KN-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cc-----chHHHHHHHcCCHHHHHHHHHh
Confidence 33 3334567788999998877763
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.11 E-value=1.1e+02 Score=35.65 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHH
Q 002772 220 MNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLE 266 (882)
Q Consensus 220 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 266 (882)
+...|+.+.-.|++++|-.+.-.|-..+..-|.--+..+...++...
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 44555666666666666666666665566666655555555555443
No 299
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=82.06 E-value=1.3e+02 Score=36.74 Aligned_cols=137 Identities=16% Similarity=0.092 Sum_probs=78.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHH----HccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHh
Q 002772 546 VDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAY----GMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACS 621 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~ 621 (882)
++.--+.|.+.+|..++ .|+...+.....+| ...+.+++|.-.|+..-+. .--+.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly----~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------------ekAl~a~~ 976 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALY----KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL--------------EKALKAYK 976 (1265)
T ss_pred HHHHHhcccchhhhhee----ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH--------------HHHHHHHH
Confidence 33334555556665555 44555544444444 4456777777777654221 23466777
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchh-------hHHHHHHHHHhcCc
Q 002772 622 HSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAG-------AWSSLLGACRIHQN 694 (882)
Q Consensus 622 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~-------~~~~ll~a~~~~~~ 694 (882)
..|++++|+.+..++.. +-.--..+-..|+.-+...++.-||-++.++--.+|...- .|.--+..+..+++
T Consensus 977 ~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 88999999998887753 2211223336677888888888888888776543433321 35444555555554
Q ss_pred hhHHHHHH
Q 002772 695 VEIGEIAA 702 (882)
Q Consensus 695 ~~~a~~~~ 702 (882)
.+.-+.+.
T Consensus 1055 ~d~iee~l 1062 (1265)
T KOG1920|consen 1055 DDIIEEVL 1062 (1265)
T ss_pred chHHHHHH
Confidence 44444433
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.72 E-value=5.9 Score=35.61 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=42.2
Q ss_pred cCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 692 HQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 692 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
..+.+.++.+.+.+--+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 6677777777777777888888888888888888888888888888777665
No 301
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.14 E-value=2 Score=25.68 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHcCCchHHHHHHH
Q 002772 714 SHYVLLSNIYSSAQLWDKAMDVRK 737 (882)
Q Consensus 714 ~~~~~l~~~y~~~g~~~~a~~~~~ 737 (882)
.....|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356788999999999999988765
No 302
>PRK10941 hypothetical protein; Provisional
Probab=80.87 E-value=4.1 Score=41.42 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
..+.|-.++...++.+.|.++.+.++.+.|+++.-+---+-+|++.|.+..|..-++...++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 56677788899999999999999999999999988888999999999999999877765443
No 303
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.56 E-value=1.2e+02 Score=35.35 Aligned_cols=85 Identities=20% Similarity=0.133 Sum_probs=35.7
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhc---C
Q 002772 256 SSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCN---C 332 (882)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~---~ 332 (882)
..+.-.|+++.|++.+-+ ..+...|.+.+...|.-+.-.+-.+... ..++....-.+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567888888888766 3344556777777666655433222211 1111111001111345667777765 3
Q ss_pred CChHHHHHHHhcc
Q 002772 333 REVECGRRVFDFI 345 (882)
Q Consensus 333 g~~~~A~~~f~~m 345 (882)
.+..+|...|--+
T Consensus 341 td~~~Al~Y~~li 353 (613)
T PF04097_consen 341 TDPREALQYLYLI 353 (613)
T ss_dssp T-HHHHHHHHHGG
T ss_pred cCHHHHHHHHHHH
Confidence 4555555555433
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.83 E-value=3.4 Score=26.23 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=21.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHc
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVAE 599 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 599 (882)
.|..+...|...|++++|++.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4667778888888888888888888873
No 305
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.55 E-value=20 Score=29.65 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 002772 520 LAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAE 599 (882)
Q Consensus 520 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 599 (882)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|-.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555565555544422 22222222445667899999999999999999999988755 3668888888888899888
Q ss_pred CCCCCcccCChhHHHH
Q 002772 600 GSRGGEVKPNEVTFIA 615 (882)
Q Consensus 600 g~~~~~~~pd~~t~~~ 615 (882)
| .|...+|..
T Consensus 98 g------~p~lq~Faa 107 (115)
T TIGR02508 98 G------DPRLQTFVA 107 (115)
T ss_pred C------CHHHHHHHH
Confidence 7 677766654
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=79.04 E-value=41 Score=31.36 Aligned_cols=134 Identities=9% Similarity=0.055 Sum_probs=78.7
Q ss_pred HHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcC-CChHHHHHHHhccC
Q 002772 268 VMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNC-REVECGRRVFDFIS 346 (882)
Q Consensus 268 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~m~ 346 (882)
++.++.+.+.++.|+...+..++..+.+.|....-.++ +..+.++++..+...|++.-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 34555666778888888888888888888876554443 33442455555555555443221 11334455555543
Q ss_pred CCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHH
Q 002772 347 DKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIK 414 (882)
Q Consensus 347 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 414 (882)
..+..++..+...|++-+|+++.++. . + -+......++.+..+.+|...-..++....+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~-~--~--~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQY-H--K--VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHc-C--C--cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24677788899999999999998775 2 1 2223334455555555554444444444443
No 307
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.04 E-value=22 Score=33.70 Aligned_cols=93 Identities=12% Similarity=0.000 Sum_probs=55.0
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCc
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEPS-----PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQN 694 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~ 694 (882)
...|++++|..-|...+.. .++. ...|..-.-++.+.+.++.|++-..+. ...|....++..-.-+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3456666666666666542 2221 223444445666677777776655433 4455443233333446667778
Q ss_pred hhHHHHHHHHHhcCCCCCCch
Q 002772 695 VEIGEIAAQNLFLLEPDVASH 715 (882)
Q Consensus 695 ~~~a~~~~~~~~~l~p~~~~~ 715 (882)
++.|..-++++++++|....+
T Consensus 184 ~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHH
Confidence 888999999999999976433
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=77.88 E-value=89 Score=32.21 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHhhCC--CCC-eeeHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 002772 423 VQNALMDMYSRMGRIE---ISKTIFDDME--VRD-TVSWNTMITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 423 ~~~~Li~~y~~~g~~~---~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
+...|+.+|...+..+ +|.++++.+. -++ ...+-.-+..+.+.++.+++.+.+.+|+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 3344555555555433 2333333332 111 22333334444445666666666666665
No 309
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.79 E-value=1.5 Score=44.82 Aligned_cols=89 Identities=11% Similarity=0.055 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 660 GKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 660 g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
|.+++|++.+-.. +..|....++..-.+++...+....+++-+..+++++|+...-|-.-+......|+|++|.+.+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 4455555555432 344444434444455566667777788888888888888888888888888888888888888888
Q ss_pred HHhCCCccCC
Q 002772 739 MKEMGVRKEP 748 (882)
Q Consensus 739 m~~~g~~~~~ 748 (882)
..+.++....
T Consensus 208 a~kld~dE~~ 217 (377)
T KOG1308|consen 208 ACKLDYDEAN 217 (377)
T ss_pred HHhccccHHH
Confidence 8777765443
No 310
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.75 E-value=85 Score=31.88 Aligned_cols=58 Identities=12% Similarity=-0.064 Sum_probs=51.2
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 684 SLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 684 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
-....|...|+...|....++++.++|-+...+-.|.++|+..|+--+|.+-++++.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3346788999999999999999999999999999999999999998888877777653
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=77.28 E-value=24 Score=33.40 Aligned_cols=95 Identities=12% Similarity=0.019 Sum_probs=48.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV--TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS---- 645 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---- 645 (882)
.|..+..-|.+.|+.++|++.|.++.+.. ..|... .+..++..+...|++..+..+..+......-..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 34445555666666666666666665544 334322 3455555566666666666665555432111111
Q ss_pred --hhHHHHHHHHhhccCCHHHHHHHHHhCC
Q 002772 646 --PDHYACVVDLLGRAGKVEDAYQLINMMP 673 (882)
Q Consensus 646 --~~~~~~li~~l~r~g~~~eA~~~~~~m~ 673 (882)
...|..|.. ...+++.+|-+.|-...
T Consensus 113 nrlk~~~gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 113 NRLKVYEGLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHH--HHhchHHHHHHHHHccC
Confidence 122222222 23567777777666553
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.20 E-value=1.6e+02 Score=34.69 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=63.4
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChh
Q 002772 155 LCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVD 234 (882)
Q Consensus 155 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~ 234 (882)
+-+.|++++|...|-+-... +.| +.+++-+-.. ..+......+..+.+.|-.+..--+.|++.|.+.++.+
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda---q~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA---QRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH---HHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence 34577778877777655421 222 2233333222 44555555566666667445555678899999999998
Q ss_pred HHHHHHhcCCCCCcc-cHHHHHHHHHcCCChHHHHHHHHH
Q 002772 235 DAKTLFKSFEDRDLV-SWNTIVSSLSQNDKFLEAVMFLRQ 273 (882)
Q Consensus 235 ~A~~~f~~m~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~ 273 (882)
+-.++.+...+.... -....+..+-+.+-.++|..+-..
T Consensus 449 kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 449 KLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 888887776632111 234455555555555555554433
No 313
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.90 E-value=1.6e+02 Score=34.58 Aligned_cols=128 Identities=9% Similarity=0.047 Sum_probs=74.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcccCChh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccC
Q 002772 583 HGEGQEVLELLKNMVAEGSRGGEVKPNEV--TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAG 660 (882)
Q Consensus 583 ~g~~~~A~~l~~~m~~~g~~~~~~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g 660 (882)
..+.+.|..++.+...... ..+... ....+.......+...++...++..... ..+......-+..-.+.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~----~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQK----LNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTG 326 (644)
T ss_pred HhCHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHcc
Confidence 3456888888887755430 333322 2333333333333356777777665432 224444555555656889
Q ss_pred CHHHHHHHHHhCCCCCCchhhHHH-HHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHH
Q 002772 661 KVEDAYQLINMMPPEFDKAGAWSS-LLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSN 721 (882)
Q Consensus 661 ~~~eA~~~~~~m~~~p~~~~~~~~-ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 721 (882)
+++.+...|..|+..-....-|.- +..+....|+.+.|...++++.. + .+.|-.|+.
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LAa 384 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVAA 384 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHHH
Confidence 999999999988632222223433 44565668999999999988754 2 245655543
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.89 E-value=36 Score=31.59 Aligned_cols=118 Identities=16% Similarity=0.045 Sum_probs=57.6
Q ss_pred HhcCChhHHHHHHhcCCCCCcccHHHHH-----HHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHH---HhccCCCh
Q 002772 228 AKLGRVDDAKTLFKSFEDRDLVSWNTIV-----SSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLP---ACSHLEML 299 (882)
Q Consensus 228 ~~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~---a~~~~~~~ 299 (882)
...+..++|+.-|..+.+-+.-+|-.|. ....+.|+...|+..|++.-.....|-..-=..-|+ .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3456677777777777765555555443 345667777777777777765543343221011111 12233444
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccC
Q 002772 300 DTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFIS 346 (882)
Q Consensus 300 ~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 346 (882)
+......+-+...+ -+.-.....+|.-.-.|.|++.+|.+.|..+.
T Consensus 149 ~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 44433333332222 22223333444444445555555555554443
No 315
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.52 E-value=93 Score=34.21 Aligned_cols=162 Identities=14% Similarity=0.139 Sum_probs=116.6
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHH
Q 002772 247 DLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALV 326 (882)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li 326 (882)
|-...-++|..+.++....-+..+-.+|..-| -+...|..++..|... .-+.-..+++.+++.. -.|+.....|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 34456678888888888888888888998854 4677888899998887 5566778888888875 55667777888
Q ss_pred HHhhcCCChHHHHHHHhccCCCCce---------ehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhh
Q 002772 327 DMYCNCREVECGRRVFDFISDKKIA---------LWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACV 397 (882)
Q Consensus 327 ~~y~~~g~~~~A~~~f~~m~~~~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~ 397 (882)
..|-+ ++.+.+...|.....+=+. .|.-++..- ..+.+..+.+..++....|..--.+.+--+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 88887 8888888887765432111 566665421 34566777777777555666666666666777777
Q ss_pred cCCCCcchhhHHHHHHHhC
Q 002772 398 RSEAFPDKEGIHGHAIKLG 416 (882)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~g 416 (882)
...++.++.++++.+.+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 7888888888888777654
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.18 E-value=4.5 Score=27.14 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHH
Q 002772 571 ITWNVIIMAYGMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 571 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 598 (882)
.+++.|...|...|++++|++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777654
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.93 E-value=4.6 Score=27.06 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 714 SHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 714 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3577899999999999999998887654
No 318
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.51 E-value=18 Score=34.33 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCC------hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC---Ch
Q 002772 540 VVGSALVDMYAKCGCLNFARRVFDLMPVRN------VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP---NE 610 (882)
Q Consensus 540 ~~~~~li~~y~k~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p---d~ 610 (882)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+....- ..+ +.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~-----~~~~d~~~ 111 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI-----EKGGDWER 111 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----hccchHHH
Confidence 466788999999999999999999987433 3456678888888899999998888876543 222 22
Q ss_pred hHHHHHHHH--HhccCCHHHHHHHHHHhHHh
Q 002772 611 VTFIALFAA--CSHSGMVSEGMDLFYKMKDD 639 (882)
Q Consensus 611 ~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~ 639 (882)
..-..+..+ +...+++.+|-+.|-.....
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 222222222 34568899999988777654
No 319
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=75.32 E-value=86 Score=32.61 Aligned_cols=53 Identities=17% Similarity=0.333 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhc--cC----CHHHHHHHHHHhHHhcCCC
Q 002772 586 GQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSH--SG----MVSEGMDLFYKMKDDYGIE 643 (882)
Q Consensus 586 ~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~~~~ 643 (882)
+++.+.+++.|.+.| ++-+..+|.+....... .. ...++.++|+.|++.|.+-
T Consensus 78 ~~~~~~~y~~L~~~g-----Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL 136 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG-----FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL 136 (297)
T ss_pred HHHHHHHHHHHHHhc-----cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc
Confidence 456778999999999 78887777653332222 22 3677889999999886553
No 320
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.89 E-value=5.3 Score=24.22 Aligned_cols=31 Identities=16% Similarity=0.046 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 711 (882)
.|..+...+...++.+.|...+++++++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5666667777777777777777777777664
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.33 E-value=19 Score=39.97 Aligned_cols=151 Identities=18% Similarity=0.176 Sum_probs=86.8
Q ss_pred HhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHH
Q 002772 432 SRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVL 511 (882)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll 511 (882)
.-.|+++.|..++-.++++ .-+.++.-+.+.|..++|+++ ...||.. .
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~------------------------s~D~d~r-----F 644 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL------------------------STDPDQR-----F 644 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc------------------------CCChhhh-----h
Confidence 3456777777766666532 234455566667777777654 1222211 1
Q ss_pred HhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHH
Q 002772 512 PGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLE 591 (882)
Q Consensus 512 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 591 (882)
....++|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|.... -|..|+-.+...|+.+....
T Consensus 645 elal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHH
Confidence 1123456666666554432 245567777777777777777777776643 35666666777777666666
Q ss_pred HHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 002772 592 LLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKM 636 (882)
Q Consensus 592 l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 636 (882)
+-....+.| -+...| .++...|+++++.+++.+-
T Consensus 714 la~~~~~~g-------~~N~AF----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQG-------KNNLAF----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhc-------ccchHH----HHHHHcCCHHHHHHHHHhc
Confidence 666666655 222222 2344567777776665443
No 322
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=74.22 E-value=26 Score=30.98 Aligned_cols=25 Identities=12% Similarity=-0.021 Sum_probs=12.1
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCC
Q 002772 687 GACRIHQNVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 687 ~a~~~~~~~~~a~~~~~~~~~l~p~ 711 (882)
-+|.+.++.+.+.+..+.+++.+|+
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 3444444455555555444444444
No 323
>PRK09687 putative lyase; Provisional
Probab=74.20 E-value=1.1e+02 Score=31.51 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=50.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCcccCChhHHHHH
Q 002772 538 DVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHG-EGQEVLELLKNMVAEGSRGGEVKPNEVTFIAL 616 (882)
Q Consensus 538 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~l 616 (882)
+..+-...+.++++.|+.+....+..-+..+|...-...+.++.+.+ ...++...+..++. .+|...-...
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--------D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--------DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--------CCChHHHHHH
Confidence 44444455555555555332222222233444433333344444332 13345555544442 2344444445
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC
Q 002772 617 FAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 617 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m 672 (882)
+.++.+.|. .++...+-...+. + + .....+.+++.-|.- +|...+..+
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~-~---~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKK-G---T--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcC-C---c--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 555555555 3344444433332 1 1 123344555555553 444444443
No 324
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.10 E-value=96 Score=30.70 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC---h---hH
Q 002772 539 VVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN---E---VT 612 (882)
Q Consensus 539 ~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd---~---~t 612 (882)
+..++--..+|..+|.++.|-..+++.. -....-++++|+++|++...-- .-+ . ..
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavv------e~~dr~~ma~el 152 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVV------EEDDRDQMAFEL 152 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHH------hccchHHHHHHH
Confidence 3456666788999999888877766532 1234457888888888876531 111 1 12
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCCCh-hHHHHHHHHhhccCCHHHHHHHHHh---CC--CCCCchhhHH
Q 002772 613 FIALFAACSHSGMVSEGMDLFYKMKDD---YGIEPSP-DHYACVVDLLGRAGKVEDAYQLINM---MP--PEFDKAGAWS 683 (882)
Q Consensus 613 ~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~~-~~~~~li~~l~r~g~~~eA~~~~~~---m~--~~p~~~~~~~ 683 (882)
+..+-..+.+..++++|-..|.+-..- ..--|+. ..|-..|-.+.-..++..|...++. .+ ..++...+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 334445566677777776655443211 0111221 2344555666677899999999987 33 2344444788
Q ss_pred HHHHHHHhcCchhHHHHHH
Q 002772 684 SLLGACRIHQNVEIGEIAA 702 (882)
Q Consensus 684 ~ll~a~~~~~~~~~a~~~~ 702 (882)
.||.+|- .||.|....++
T Consensus 233 nLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHhc-cCCHHHHHHHH
Confidence 8888874 56777666665
No 325
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=73.77 E-value=3.8 Score=26.42 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=22.0
Q ss_pred HHHHHhCCCCCchhHHHHHHHHhhcCCChHHHH
Q 002772 307 AYALRNDILIDNSFVGSALVDMYCNCREVECGR 339 (882)
Q Consensus 307 ~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~ 339 (882)
...++.. |.+..+++.|...|...|++++|+
T Consensus 3 ~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344443 777788888888888888888775
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.34 E-value=5.8 Score=25.19 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=20.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHH
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 598 (882)
+|..+...|.+.|++++|++.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777888888888888888776
No 327
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.13 E-value=2.1e+02 Score=34.10 Aligned_cols=201 Identities=12% Similarity=0.093 Sum_probs=106.2
Q ss_pred hcCCHHHHHHHHhhCC----CCCh-------hhHHHHHHH-HHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHH
Q 002772 551 KCGCLNFARRVFDLMP----VRNV-------ITWNVIIMA-YGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFA 618 (882)
Q Consensus 551 k~g~~~~A~~~~~~m~----~~~~-------~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~ 618 (882)
...++.+|..+..+.. .|+. ..|+++-.- ....|++++|+++-+.....= +..-..+..+.+..+..
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L-~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQL-PEAAYRSRIVALSVLGE 505 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-ccccchhhhhhhhhhhH
Confidence 4566777766665543 3222 245554332 234678888888888777641 00001223445555666
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHH-----HHhhccCCHHHH--HHHHHhC-----CCCCCchhhHHHHH
Q 002772 619 ACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVV-----DLLGRAGKVEDA--YQLINMM-----PPEFDKAGAWSSLL 686 (882)
Q Consensus 619 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-----~~l~r~g~~~eA--~~~~~~m-----~~~p~~~~~~~~ll 686 (882)
+..-.|++++|..+.....+. .-.-+..++..++ ..+-..|....| ...++.. ..+|........-+
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 666778888888877666543 3333444444332 234455632222 2222211 12222111222222
Q ss_pred HHHHhcCchhHHHHHHHHHhcCC------CCCC-chHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEE
Q 002772 687 GACRIHQNVEIGEIAAQNLFLLE------PDVA-SHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWI 753 (882)
Q Consensus 687 ~a~~~~~~~~~a~~~~~~~~~l~------p~~~-~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i 753 (882)
..++.+-+.+.++..+.+.+++. |.++ ..+..|+.++...|+.++|......+........+...|+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 23333333666666666666542 2222 2234788899999999999998888877655444444443
No 328
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.11 E-value=35 Score=28.36 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 002772 200 RLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGI 279 (882)
Q Consensus 200 ~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 279 (882)
+++..|-+++...+.....+--.-+..+...|++++|..+.+.+.-||...|-+|-.+ +.|..+++..-+.+|-.+|
T Consensus 22 qEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg- 98 (115)
T TIGR02508 22 QEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG- 98 (115)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-
Confidence 3444444444444422333333444556788999999999999999999999888664 5677777777777777765
Q ss_pred CCChhhH
Q 002772 280 KPDGVSI 286 (882)
Q Consensus 280 ~pd~~t~ 286 (882)
.|...+|
T Consensus 99 ~p~lq~F 105 (115)
T TIGR02508 99 DPRLQTF 105 (115)
T ss_pred CHHHHHH
Confidence 3443344
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.97 E-value=74 Score=28.88 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=54.0
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHH
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEPSP-DHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGE 699 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~ 699 (882)
...++.+++..+++.|.- +.|+. +.-..-+-.+.+.|+++||..++++....+.....-.+|+..|..-..-..=.
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr 97 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWH 97 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHH
Confidence 447899999999999974 45642 23333455678899999999999998765544314556666664433222223
Q ss_pred HHHHHHhcCC
Q 002772 700 IAAQNLFLLE 709 (882)
Q Consensus 700 ~~~~~~~~l~ 709 (882)
..++.+++-.
T Consensus 98 ~~A~~~le~~ 107 (153)
T TIGR02561 98 VHADEVLARD 107 (153)
T ss_pred HHHHHHHHhC
Confidence 3344444443
No 330
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.18 E-value=23 Score=36.10 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=73.9
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC--------hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 002772 533 NMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-VRN--------VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRG 603 (882)
Q Consensus 533 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 603 (882)
.|......+...++..-....+++++...+-++. .|+ .++|-.++ . .=++++++.++..=++-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll---l-ky~pq~~i~~l~npIqYG--- 130 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL---L-KYDPQKAIYTLVNPIQYG--- 130 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH---H-ccChHHHHHHHhCcchhc---
Confidence 4555566666677777777788899988877765 222 23333332 2 236779999999999999
Q ss_pred CcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 002772 604 GEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDD 639 (882)
Q Consensus 604 ~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 639 (882)
+-||..|++.+++.+.+.+.+.+|..+...|...
T Consensus 131 --iF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 131 --IFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred --cccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987777653
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.18 E-value=4 Score=25.66 Aligned_cols=28 Identities=14% Similarity=0.212 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 715 HYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 715 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
++..++.+|.+.|++++|.+.++++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3567888999999999999999987654
No 332
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.88 E-value=25 Score=25.50 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCc
Q 002772 716 YVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGY 791 (882)
Q Consensus 716 ~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~ 791 (882)
...|+-.+.+.|++++|.+..+.+.+. +|...+.....+.+.++|.+.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456777889999999999999988764 35555555555667777777763
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.77 E-value=6.4 Score=24.64 Aligned_cols=31 Identities=16% Similarity=-0.038 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 682 WSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 682 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
+-.+..++...|+.+.|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456677788889999999999999888863
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.55 E-value=21 Score=34.16 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=54.0
Q ss_pred hhccCCHHHHHHHHHhCCC--CCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC----CCchHHHHHHHHHHcCCc
Q 002772 656 LGRAGKVEDAYQLINMMPP--EFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD----VASHYVLLSNIYSSAQLW 729 (882)
Q Consensus 656 l~r~g~~~eA~~~~~~m~~--~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~ 729 (882)
..|.|+ ++|.+.|-.+.. .-+.+ ....-+..+....|.+.+...+-+++++.+. |+..+..|+.+|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~-elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETA-ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 456655555532 23344 4555566667788999999999999997543 478899999999999999
Q ss_pred hHHH
Q 002772 730 DKAM 733 (882)
Q Consensus 730 ~~a~ 733 (882)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9875
No 335
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.49 E-value=1.2e+02 Score=29.86 Aligned_cols=92 Identities=13% Similarity=0.247 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHhHHhcCCC-CChhHHHHHH---HHhhccCCHHHHHHHHHhCC-CCCCch-hhHH---HHH--HHHHhc
Q 002772 624 GMVSEGMDLFYKMKDDYGIE-PSPDHYACVV---DLLGRAGKVEDAYQLINMMP-PEFDKA-GAWS---SLL--GACRIH 692 (882)
Q Consensus 624 g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li---~~l~r~g~~~eA~~~~~~m~-~~p~~~-~~~~---~ll--~a~~~~ 692 (882)
.++++|+..|+..-+-|..+ .+...--|++ +.-+..|++.+|.+++++.. ..-++. --|. -++ +.|...
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 45666666666665433222 2222223343 33456788889999988752 111111 0232 223 235444
Q ss_pred -CchhHHHHHHHHHhcCCCCCCch
Q 002772 693 -QNVEIGEIAAQNLFLLEPDVASH 715 (882)
Q Consensus 693 -~~~~~a~~~~~~~~~l~p~~~~~ 715 (882)
.|.--+..++++-.+++|....+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 67778888999999999976554
No 336
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.16 E-value=2.2e+02 Score=32.96 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 002772 571 ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDD 639 (882)
Q Consensus 571 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 639 (882)
..|..-+..+...++.. ....++.+..- .-.+...-.-++..|.+.|..+.+.++.+.+-.+
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~-----p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~ 434 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRV-----PLDTNDDAEKLLEICAELGLEDVAREICKILGQR 434 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG---------SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhC-----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34555444444333222 44445554432 2234556677888899999999988888877654
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.92 E-value=87 Score=30.39 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=78.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHh-cCCCCChhHHH
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDD-YGIEPSPDHYA 650 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~ 650 (882)
|.+..|+.+.+.+...+|+...++-++.+ +-|.-+-..++..++-.|++++|..-++-..+- -...+....|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 44556777888888999999998888754 334455666778889999999998776665431 02223355666
Q ss_pred HHHHHhhccCCHHHHH-HHHHh--CCCCC--CchhhHHHHHH-HHHhc--CchhHHHHHHHHHhcCCCCCCc
Q 002772 651 CVVDLLGRAGKVEDAY-QLINM--MPPEF--DKAGAWSSLLG-ACRIH--QNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 651 ~li~~l~r~g~~~eA~-~~~~~--m~~~p--~~~~~~~~ll~-a~~~~--~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
.+|++- .+. ++|.. .|.-+ ..+ .|-..+. +...| |.-+.....-+.+++.-|...+
T Consensus 77 ~lir~e-------a~R~evfag~~~Pgflg~p~p-~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 77 HLIRCE-------AARNEVFAGGAVPGFLGGPSP-EWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHHHH-------HHHHHHhccCCCCCCcCCCCH-HHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 666542 222 23332 12111 233 7876553 44333 3455566777788888776554
No 338
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.46 E-value=18 Score=35.39 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=63.6
Q ss_pred CCHHHHHHHHH-hCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 660 GKVEDAYQLIN-MMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 660 g~~~eA~~~~~-~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
.++++|..-+. .+...|..+..|..=+-.+.+..+.+..+.-..+++++.|+..-....|+........+++|..++.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34455544332 33457777657777777777788889999999999999999999999999999999999999998887
Q ss_pred HHh
Q 002772 739 MKE 741 (882)
Q Consensus 739 m~~ 741 (882)
...
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 743
No 339
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=68.45 E-value=10 Score=38.86 Aligned_cols=84 Identities=12% Similarity=-0.058 Sum_probs=61.0
Q ss_pred HHhhccCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHH
Q 002772 654 DLLGRAGKVEDAYQLINM-MPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKA 732 (882)
Q Consensus 654 ~~l~r~g~~~eA~~~~~~-m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 732 (882)
+-|-+.|+++||++.+.+ |...|-++..+..-..||.+...+..|+.-.+.++.++-....+|.--+..-...|+..||
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456788888888888764 5566744426667778888888888999999999888876666666666666666666666
Q ss_pred HHHHH
Q 002772 733 MDVRK 737 (882)
Q Consensus 733 ~~~~~ 737 (882)
.+-.+
T Consensus 185 KkD~E 189 (536)
T KOG4648|consen 185 KKDCE 189 (536)
T ss_pred HHhHH
Confidence 55433
No 340
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.20 E-value=4.3 Score=46.72 Aligned_cols=114 Identities=22% Similarity=0.249 Sum_probs=77.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCH
Q 002772 583 HGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKV 662 (882)
Q Consensus 583 ~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~ 662 (882)
+.++++.+.+.+...--| .++|..+.+.|-.+-|+.+.+.=..++ ++...+|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG-------------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnl 659 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG-------------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNL 659 (1202)
T ss_pred hhhhHHHHHHHHhcCccc-------------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCH
Confidence 456666666555433322 345666678888888887766554443 344578999
Q ss_pred HHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHH
Q 002772 663 EDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMD 734 (882)
Q Consensus 663 ~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 734 (882)
+.|++.-++.. .+..|..|+..-..+||.+.++..+++.-..+ .|+-+|.-.|+.++-.+
T Consensus 660 e~ale~akkld----d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe--------kLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 660 EVALEAAKKLD----DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE--------KLSFLYLITGNLEKLSK 719 (1202)
T ss_pred HHHHHHHHhcC----cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh--------heeEEEEEeCCHHHHHH
Confidence 99999888753 33399999999999999999999998766544 34445555565554433
No 341
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=67.95 E-value=12 Score=34.99 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCC----chHHHHHHHHH
Q 002772 695 VEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQL----WDKAMDVRKKM 739 (882)
Q Consensus 695 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~----~~~a~~~~~~m 739 (882)
++.|..-++.++.++|+...++..+++.|...+. -.+|...|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3566777888999999999999999999988765 22444444443
No 342
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=67.63 E-value=1.9e+02 Score=31.37 Aligned_cols=71 Identities=10% Similarity=0.044 Sum_probs=50.4
Q ss_pred HHHHHHhhcCCChHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhc
Q 002772 323 SALVDMYCNCREVECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVR 398 (882)
Q Consensus 323 ~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~ 398 (882)
..|+.-|.-.|++.+|.+...++.-| --+.+.+++.+.-+.|+-...+.+++.. -.. ...|-+.+-+++.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~c-f~s----glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKEC-FKS----GLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHH-Hhc----CceeHHHhhhhhhh
Confidence 45777788889999999998887654 2346888888888888887777777776 323 34455555555544
No 343
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=67.46 E-value=1.1e+02 Score=28.61 Aligned_cols=56 Identities=9% Similarity=0.014 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMV 597 (882)
Q Consensus 542 ~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 597 (882)
+..+++.+...|++-+|.+.......-+...-..++.+-.+.++...=..+|+-..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566777778888888888776543333334445555555555444444444333
No 344
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=67.43 E-value=35 Score=28.49 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 002772 588 EVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVD 654 (882)
Q Consensus 588 ~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 654 (882)
+..+-++.+.... +.|+.....+.|.||.+.+++.-|..+|+..+.+.| +....|..+++
T Consensus 28 e~rrglN~l~~~D-----lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYD-----LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSS-----B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccc-----cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455556666666 889999999999999999999999999999887644 33336766654
No 345
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=66.33 E-value=33 Score=28.32 Aligned_cols=60 Identities=18% Similarity=0.323 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 002772 588 EVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVD 654 (882)
Q Consensus 588 ~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 654 (882)
++.+-++.+.... +.|+.....+.+.||.+.+++.-|..+|+..+.+.|. +...|..+++
T Consensus 25 e~rr~mN~l~~~D-----lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYD-----LVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccc-----cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 4556666666677 8899999999999999999999999999988764332 4445665553
No 346
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=66.30 E-value=27 Score=28.80 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHH-HhcCCCCChhHHhHHHH
Q 002772 57 QFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVV-KYGYGLSSVTVANTLVN 121 (882)
Q Consensus 57 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~ 121 (882)
+.-++..-++.+....+.|++....+.|++|.+..++..|.++++-+. +.| .+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~---~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG---AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc---CchhhHHHHHH
Confidence 444666777788888899999999999999999999999999999776 333 23345555544
No 347
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.20 E-value=21 Score=39.53 Aligned_cols=100 Identities=16% Similarity=0.043 Sum_probs=57.9
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHH
Q 002772 622 HSGMVSEGMDLFYKMKDDYGIEPS--PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIG 698 (882)
Q Consensus 622 ~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a 698 (882)
-.|+...|...+.... ...|. ......|.+++.+.|...+|-.++.+. .+.-..+-..-++..++....|++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3455555555444443 22221 112233444455555555555554432 11112222566778888888999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHH
Q 002772 699 EIAAQNLFLLEPDVASHYVLLSNIYS 724 (882)
Q Consensus 699 ~~~~~~~~~l~p~~~~~~~~l~~~y~ 724 (882)
.+.++.++.++|+++..-..|-.+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999887666655443
No 348
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=65.05 E-value=1.1e+02 Score=31.20 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=28.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHccCChh
Q 002772 536 ATDVVVGSALVDMYAKCGCLNFARRVFDLMP-----VRNVITWNVIIMAYGMHGEGQ 587 (882)
Q Consensus 536 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~ 587 (882)
.++..+-..+++.+++.+++..-.++++... ..|...|..+|..-...|+..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 3444455555555666666665555555433 235555666666666666544
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.75 E-value=40 Score=36.38 Aligned_cols=99 Identities=9% Similarity=0.106 Sum_probs=46.7
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccC
Q 002772 581 GMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAG 660 (882)
Q Consensus 581 ~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g 660 (882)
...|+++.+++.+...... +-....+...++...-..|++++|...-..|... .++ +.+....-...--..|
T Consensus 334 ~~lg~ye~~~~~~s~~~~~------~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~ 405 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI------IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN-EIE-DEEVLTVAAGSADALQ 405 (831)
T ss_pred HHhhhHHHHHHHhhchhhh------hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc-ccC-ChhheeeecccHHHHh
Confidence 3456666666665554332 2334455566666666666666666666666543 332 1111111111112234
Q ss_pred CHHHHHHHHHhC-CC-CCCchhhHHHHHHH
Q 002772 661 KVEDAYQLINMM-PP-EFDKAGAWSSLLGA 688 (882)
Q Consensus 661 ~~~eA~~~~~~m-~~-~p~~~~~~~~ll~a 688 (882)
.++++.-.+++. .. .|... -|-.+++.
T Consensus 406 ~~d~~~~~wk~~~~~~~~~~~-g~v~~~~~ 434 (831)
T PRK15180 406 LFDKSYHYWKRVLLLNPETQS-GWVNFLSS 434 (831)
T ss_pred HHHHHHHHHHHHhccCChhcc-cceeeecc
Confidence 556666555554 12 23333 55555544
No 350
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.48 E-value=2e+02 Score=33.17 Aligned_cols=159 Identities=15% Similarity=0.120 Sum_probs=85.7
Q ss_pred HccCChhHHHHHHHHHHH-------cCCCCCcccCChhHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCCCChhH
Q 002772 581 GMHGEGQEVLELLKNMVA-------EGSRGGEVKPNEVTFIALFAACSHSG-----MVSEGMDLFYKMKDDYGIEPSPDH 648 (882)
Q Consensus 581 ~~~g~~~~A~~l~~~m~~-------~g~~~~~~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~ 648 (882)
....+.+.|+.+|+.+.+ .| +......+...|.+.. +.+.|..++....+. |. |+...
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~--------~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g~-~~a~~ 329 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG--------LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-GN-PDAQY 329 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc--------CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-CC-chHHH
Confidence 344556666666666655 33 2223444555554432 455677777776653 32 33333
Q ss_pred HHHHHHHhhc-cCCHHHHHHHHHhCCCCCCchh-hHHHHHHHHH--hcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 002772 649 YACVVDLLGR-AGKVEDAYQLINMMPPEFDKAG-AWSSLLGACR--IHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYS 724 (882)
Q Consensus 649 ~~~li~~l~r-~g~~~eA~~~~~~m~~~p~~~~-~~~~ll~a~~--~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 724 (882)
+-......+. -.+...|.+++........... .|-++...+- ...+.+.|...++++.+.. .+.+...++..|.
T Consensus 330 ~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~ 407 (552)
T KOG1550|consen 330 LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYE 407 (552)
T ss_pred HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHH
Confidence 3222222333 2356677777776543322220 2222221111 2337788888888888887 3444555555544
Q ss_pred Hc-CCchHHHHHHHHHHhCCCccCCcee
Q 002772 725 SA-QLWDKAMDVRKKMKEMGVRKEPGCS 751 (882)
Q Consensus 725 ~~-g~~~~a~~~~~~m~~~g~~~~~~~s 751 (882)
-. ++++.+.-.+..+++.|.+-.-..+
T Consensus 408 ~g~~~~~~~~~~~~~~a~~g~~~~q~~a 435 (552)
T KOG1550|consen 408 YGVGRYDTALALYLYLAELGYEVAQSNA 435 (552)
T ss_pred HccccccHHHHHHHHHHHhhhhHHhhHH
Confidence 44 8888888888888887765443333
No 351
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.21 E-value=30 Score=35.27 Aligned_cols=98 Identities=10% Similarity=0.031 Sum_probs=62.0
Q ss_pred CChhHHhHHHHHHHhcCCCHHHHHHHHhccCC-CCc-----eeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHH
Q 002772 111 SSVTVANTLVNMYGKCGSDMWDVYKVFDRITE-KDQ-----VSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLV 184 (882)
Q Consensus 111 ~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 184 (882)
....+...++..-.... .+++++..+-.+.. |+. .+-.+.++- +-.-+.++++.++..=.+.|+.||.+|+.
T Consensus 62 ~s~~~Vd~~V~v~~~~~-~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSRE-EIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhcccccc-chhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchhhHH
Confidence 44555566666655555 78888877765552 211 111122332 23346778888888888889999999988
Q ss_pred HHHHHhccCCcccchHHHHHHHHhhhhcC
Q 002772 185 SVALACSNLSRRDGLRLGRQVHGNSLRVG 213 (882)
Q Consensus 185 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~g 213 (882)
.++..+... +++..+.++...++...
T Consensus 140 ~l~D~flk~---~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 140 LLMDSFLKK---ENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHhc---ccHHHHHHHHHHHHHHH
Confidence 777777766 66666666665555443
No 352
>PF13934 ELYS: Nuclear pore complex assembly
Probab=63.77 E-value=90 Score=30.98 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=65.8
Q ss_pred HHHHHHHHH--ccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 002772 573 WNVIIMAYG--MHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYA 650 (882)
Q Consensus 573 ~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 650 (882)
|...+.||. -++++++|++++-.- . +.|+.. .-++.++...|+.+.|..+++.+.- .-.+.....
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s-----~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~ 145 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---S-----LIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALT 145 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---C-----CCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHH
Confidence 445566653 467788888877321 1 222222 1467777778999999999887642 122333334
Q ss_pred HHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcC
Q 002772 651 CVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 651 ~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~ 693 (882)
.+... ..+|.+.||..+.+..+.+-... .|..++..|....
T Consensus 146 ~~~~~-La~~~v~EAf~~~R~~~~~~~~~-l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 146 LYFVA-LANGLVTEAFSFQRSYPDELRRR-LFEQLLEHCLEEC 186 (226)
T ss_pred HHHHH-HHcCCHHHHHHHHHhCchhhhHH-HHHHHHHHHHHHh
Confidence 44444 55689999999998876432233 7888888776554
No 353
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.94 E-value=14 Score=30.41 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 699 EIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 699 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
...+++.++.+|+|...-..|+..|...|++++|.+.+-.+.++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34566777788888888888888888888888888877766554
No 354
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.78 E-value=2.4e+02 Score=30.97 Aligned_cols=211 Identities=13% Similarity=0.067 Sum_probs=101.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChh--HHhHHHHHHH
Q 002772 49 LRSEARSNQFREAILSYIEMTRSDIQPDNFA--FPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVT--VANTLVNMYG 124 (882)
Q Consensus 49 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~y~ 124 (882)
+...++.|+.+. .+.+.+.|..|+... ..+.|..++..|+.+ +.+.+.+.|.. ++.. ...+.+...+
T Consensus 6 L~~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~-~~~~~~~~~t~L~~A~ 76 (413)
T PHA02875 6 LCDAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAI-PDVKYPDIESELHDAV 76 (413)
T ss_pred HHHHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCC-ccccCCCcccHHHHHH
Confidence 334455666643 444556677665532 344556666777765 44445666654 3321 1234455666
Q ss_pred hcCCCHHHHHHHHhccCCCC----ceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhh---HHHHHHHhccCCccc
Q 002772 125 KCGSDMWDVYKVFDRITEKD----QVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFT---LVSVALACSNLSRRD 197 (882)
Q Consensus 125 ~~g~~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~ 197 (882)
+.| +.+.+..+++.-...+ ..-++. +...+..|+. ++++.+.+.|..|+... .+.+..++ .. +
T Consensus 77 ~~g-~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~-~~---~ 146 (413)
T PHA02875 77 EEG-DVKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAV-MM---G 146 (413)
T ss_pred HCC-CHHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHH-Hc---C
Confidence 778 8988888887654321 112233 3333455654 45566666777665332 22333332 23 4
Q ss_pred chHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcc---cHHHHHHHHHcCCChHHHHHHHHHH
Q 002772 198 GLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLV---SWNTIVSSLSQNDKFLEAVMFLRQM 274 (882)
Q Consensus 198 ~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m 274 (882)
+.+..+.+...-......|..- .+.+...+..|+.+-+..+++.-..++.. ...+.+...+..|+. ++.+.+
T Consensus 147 ~~~~v~~Ll~~g~~~~~~d~~g-~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~L 221 (413)
T PHA02875 147 DIKGIELLIDHKACLDIEDCCG-CTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLF 221 (413)
T ss_pred CHHHHHHHHhcCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHH
Confidence 4444444433221111111111 22233344556666666666554443322 122344434444544 234444
Q ss_pred HHCCCCCCh
Q 002772 275 ALRGIKPDG 283 (882)
Q Consensus 275 ~~~g~~pd~ 283 (882)
.+.|..++.
T Consensus 222 l~~gad~n~ 230 (413)
T PHA02875 222 IKRGADCNI 230 (413)
T ss_pred HHCCcCcch
Confidence 555655543
No 355
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=62.35 E-value=1.4e+02 Score=31.76 Aligned_cols=109 Identities=15% Similarity=0.230 Sum_probs=81.2
Q ss_pred HHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHH------------HHHHHhcCchhHHHHHHHHHhcCCCCCC-----
Q 002772 651 CVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSL------------LGACRIHQNVEIGEIAAQNLFLLEPDVA----- 713 (882)
Q Consensus 651 ~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~l------------l~a~~~~~~~~~a~~~~~~~~~l~p~~~----- 713 (882)
.|...+-..|++++|.+++.+.+.+ +++++ +.-|...+|+-.|....+++..-.-+.+
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE-----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE-----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh-----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 3556667899999999999988754 33333 4667888899999988888776432222
Q ss_pred --chHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEe
Q 002772 714 --SHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLA 764 (882)
Q Consensus 714 --~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~ 764 (882)
.+|.++..++...+.+=++.+.++..-+.|..+...--|+++-..+-.|..
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 368899999999999999999999998888777655668776655555543
No 356
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.32 E-value=2.3e+02 Score=30.48 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 002772 540 VVGSALVDMYAKCGCLNFARRVFDLMPV------RNVITWNVIIMAYGMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 540 ~~~~~li~~y~k~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 598 (882)
..+.-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|++......-.+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3456678899999999999999998652 1234455555555556777766666665544
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.91 E-value=1.8e+02 Score=29.16 Aligned_cols=194 Identities=11% Similarity=0.065 Sum_probs=99.1
Q ss_pred cCCChHHHHHHHhccCCC-------CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCc
Q 002772 331 NCREVECGRRVFDFISDK-------KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFP 403 (882)
Q Consensus 331 ~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~ 403 (882)
+...+++|..-|.+..+- +..+.--||..+.+.|++++.++.|++| . || +..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql-L---------TY---IkS-------- 97 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL-L---------TY---IKS-------- 97 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH-H---------HH---HHH--------
Confidence 344566777777665432 1224455667777777777777777666 2 11 000
Q ss_pred chhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC-----CCCeeeH----HHHHHHHHhcCCHHHHHHH
Q 002772 404 DKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME-----VRDTVSW----NTMITGYTICGQHGDALML 474 (882)
Q Consensus 404 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~----~~li~~~~~~g~~~~A~~~ 474 (882)
++.. .-+....|++++.-+.+.+.+--..+++.-. .++...| +-+-..|...+.+.+-.++
T Consensus 98 --------AVTr--NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KI 167 (440)
T KOG1464|consen 98 --------AVTR--NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKI 167 (440)
T ss_pred --------HHhc--cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHH
Confidence 0000 1233455666666565555555555544322 1233333 4566677777888888788
Q ss_pred HHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHh-cCCCchhHHHHH----HHHH
Q 002772 475 LREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRN-MLATDVVVGSAL----VDMY 549 (882)
Q Consensus 475 ~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~l----i~~y 549 (882)
+.++.. +...+... ++...| ..-...|..-++.|....+-..-++++.+.+.- .-.|.+.+...+ ..|.
T Consensus 168 lkqLh~---SCq~edGe--dD~kKG-tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMH 241 (440)
T KOG1464|consen 168 LKQLHQ---SCQTEDGE--DDQKKG-TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMH 241 (440)
T ss_pred HHHHHH---HhccccCc--hhhhcc-chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccc
Confidence 877765 20000000 000000 001134666677777777777777777766542 223333333222 2344
Q ss_pred HhcCCHHHHHHH
Q 002772 550 AKCGCLNFARRV 561 (882)
Q Consensus 550 ~k~g~~~~A~~~ 561 (882)
.+.|.+++|..-
T Consensus 242 lreg~fe~AhTD 253 (440)
T KOG1464|consen 242 LREGEFEKAHTD 253 (440)
T ss_pred cccchHHHHHhH
Confidence 566777776543
No 358
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.70 E-value=23 Score=38.43 Aligned_cols=84 Identities=15% Similarity=-0.001 Sum_probs=54.0
Q ss_pred hccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 002772 657 GRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDV 735 (882)
Q Consensus 657 ~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 735 (882)
.+.+.++.|..++.+. ..+|+.+..|..=..++.+.+++..|..-+.++++++|.....|+.=+..+.+.+++.+|...
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 3445555555555443 346665534444446666777777777777777777777777777777777777777777776
Q ss_pred HHHHH
Q 002772 736 RKKMK 740 (882)
Q Consensus 736 ~~~m~ 740 (882)
++...
T Consensus 95 l~~~~ 99 (476)
T KOG0376|consen 95 LEKVK 99 (476)
T ss_pred HHHhh
Confidence 66443
No 359
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.22 E-value=87 Score=26.53 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 002772 519 ALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 519 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 598 (882)
..++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|-.+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 46788888888877664 233333334556778999999955555566899999977654 477889999999998887
Q ss_pred cCCCCCcccCChhHHHH
Q 002772 599 EGSRGGEVKPNEVTFIA 615 (882)
Q Consensus 599 ~g~~~~~~~pd~~t~~~ 615 (882)
+| .|....|..
T Consensus 98 ~g------~~~~q~Fa~ 108 (116)
T PF09477_consen 98 SG------SPELQAFAA 108 (116)
T ss_dssp -S------SHHHHHHHH
T ss_pred CC------CHHHHHHHH
Confidence 76 565555543
No 360
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.09 E-value=55 Score=29.60 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=59.5
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHhccC---------CCCceeHHHHHHHHHhcCC-chHHHHHHHHHHHCCCCCChhhHH
Q 002772 115 VANTLVNMYGKCGSDMWDVYKVFDRIT---------EKDQVSWNSMIATLCRFGK-WDLALEAFRMMLYSNVEPSSFTLV 184 (882)
Q Consensus 115 ~~~~li~~y~~~g~~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~ 184 (882)
..|++++-.+..+ ++.....+++.+. ..+-.+|++++.+.++... ---+..+|.-|++.+.+++...|.
T Consensus 41 fiN~iL~hl~~~~-nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQ-NFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHcc-chHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3466666666666 6777776666654 2366789999999977766 456788999999988999999999
Q ss_pred HHHHHhccC
Q 002772 185 SVALACSNL 193 (882)
Q Consensus 185 ~ll~~~~~~ 193 (882)
.++++|.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 999998875
No 361
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=60.82 E-value=25 Score=35.58 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=25.3
Q ss_pred ccCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 002772 658 RAGKVEDAYQLINM-MPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 658 r~g~~~eA~~~~~~-m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
+.|+.++|..+|+. |...|+.+.++--+......++++-+|...+-+++.+.|.++.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 34444444444442 2334444434444444444444444444444444444444433
No 362
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.35 E-value=3.8e+02 Score=32.45 Aligned_cols=190 Identities=17% Similarity=0.218 Sum_probs=97.6
Q ss_pred hHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCC-CCcchHhhHHHhhc
Q 002772 437 IEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPK-PNSITLMTVLPGCG 515 (882)
Q Consensus 437 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~-p~~~t~~~ll~a~~ 515 (882)
+++...++..- .-|..|+.-|...|+.++|++++.+... +.. -|..
T Consensus 494 vee~e~~L~k~-----~~y~~Li~LY~~kg~h~~AL~ll~~l~d------------------~~~~~d~~---------- 540 (877)
T KOG2063|consen 494 VEEIETVLKKS-----KKYRELIELYATKGMHEKALQLLRDLVD------------------EDSDTDSF---------- 540 (877)
T ss_pred hHHHHHHHHhc-----ccHHHHHHHHHhccchHHHHHHHHHHhc------------------cccccccc----------
Confidence 44444444433 2488899999999999999999999876 221 1111
Q ss_pred CcchHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHH-HHHHHHHccCChhHHHHH
Q 002772 516 ALSALAKGKEIHAYAIRNMLATD--VVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWN-VIIMAYGMHGEGQEVLEL 592 (882)
Q Consensus 516 ~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~-~li~~~~~~g~~~~A~~l 592 (882)
..+.-..+.+++.+.+-+.. ...|.. ..-..+.+...++|..-......+.+ .-+-.|......+-++.+
T Consensus 541 ---~~~~~e~ii~YL~~l~~~~~~Li~~y~~----wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~Y 613 (877)
T KOG2063|consen 541 ---QLDGLEKIIEYLKKLGAENLDLILEYAD----WVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPY 613 (877)
T ss_pred ---hhhhHHHHHHHHHHhcccchhHHHHHhh----hhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHH
Confidence 11111224444444442211 111111 11234556666666551110111111 123455666778888888
Q ss_pred HHHHHHcCCCCCcccCChhHHHHHHHHHhcc--------CCHHHHHHH-----HHHhHHh-cCCCCC--------hhHHH
Q 002772 593 LKNMVAEGSRGGEVKPNEVTFIALFAACSHS--------GMVSEGMDL-----FYKMKDD-YGIEPS--------PDHYA 650 (882)
Q Consensus 593 ~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~--------g~~~~a~~~-----~~~m~~~-~~~~p~--------~~~~~ 650 (882)
++.+.... -.++..-.+.++..|... ++-+++.+. +..+.+. ....|. ...|.
T Consensus 614 LE~li~~~-----~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~e 688 (877)
T KOG2063|consen 614 LEHLISDN-----RLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYE 688 (877)
T ss_pred HHHHhHhc-----cccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHH
Confidence 88888876 566666666666655431 111122222 1111111 122222 33344
Q ss_pred HHHHHhhccCCHHHHHHHHHh
Q 002772 651 CVVDLLGRAGKVEDAYQLINM 671 (882)
Q Consensus 651 ~li~~l~r~g~~~eA~~~~~~ 671 (882)
-..-.++|.|+-++|+.++-.
T Consensus 689 e~aill~rl~khe~aL~Iyv~ 709 (877)
T KOG2063|consen 689 ERAILLGRLGKHEEALHIYVH 709 (877)
T ss_pred HHHHHHhhhhhHHHHHHHHHH
Confidence 445566688888888887654
No 363
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.31 E-value=1.7e+02 Score=29.96 Aligned_cols=71 Identities=8% Similarity=0.145 Sum_probs=47.9
Q ss_pred hHHHHHHH-hCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC-----CCCeeeHHHHHHHHHhcCCHHHHHHHHHH
Q 002772 407 GIHGHAIK-LGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME-----VRDTVSWNTMITGYTICGQHGDALMLLRE 477 (882)
Q Consensus 407 ~~~~~~~~-~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 477 (882)
++...+.. .|-.++..+...++..+++.+++.+-.++++... ..|...|..+|......|+..-..++..+
T Consensus 187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 34444442 2346677777778888888888888888877654 33777888888888888887655444443
No 364
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.11 E-value=6e+02 Score=34.32 Aligned_cols=280 Identities=15% Similarity=0.090 Sum_probs=148.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhh-CCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCC
Q 002772 423 VQNALMDMYSRMGRIEISKTIFDD-MEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPK 501 (882)
Q Consensus 423 ~~~~Li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 501 (882)
.|-.+...|+..+++|....+... ...+ +...-|.-....|++..|...|+++.+ ..
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~da~~Cye~~~q-------------------~~ 1479 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWADAAACYERLIQ-------------------KD 1479 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHHHHHHHHHHhhc-------------------CC
Confidence 344455577777777776666552 2222 233445556678888889999988875 34
Q ss_pred CC-cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHH-HHHHHhcCCHHHHHHHHhhCCCCChhhHHHH-HH
Q 002772 502 PN-SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSAL-VDMYAKCGCLNFARRVFDLMPVRNVITWNVI-IM 578 (882)
Q Consensus 502 p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l-i~~y~k~g~~~~A~~~~~~m~~~~~~~~~~l-i~ 578 (882)
|+ ..+++.++..-...+.++...-..+-.... ..+...-++++ +.+--+.++++....... ..+..+|.+. +.
T Consensus 1480 p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g 1555 (2382)
T KOG0890|consen 1480 PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIG 1555 (2382)
T ss_pred CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHH
Confidence 44 666776666665666655554433322221 12222223322 333356666666665554 5566677665 22
Q ss_pred -HHHcc--CChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHh----------HHhcCCCCC
Q 002772 579 -AYGMH--GEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKM----------KDDYGIEPS 645 (882)
Q Consensus 579 -~~~~~--g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m----------~~~~~~~p~ 645 (882)
...+. .+.-.-.++.+.+.+.- +.| +.+|+..|.+..+.++.-++ ....+..++
T Consensus 1556 ~~ll~~~~kD~~~~~~~i~~~r~~~-----i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~ 1622 (2382)
T KOG0890|consen 1556 KLLLRNKKKDEIATLDLIENSRELV-----IEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD 1622 (2382)
T ss_pred HHHHhhcccchhhHHHHHHHHHHHh-----hhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 22221 12212223344443322 111 22333333222222221111 111133333
Q ss_pred hhHHH---HHHHHhhccCCHHHHHHHHHh---------CC--CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 002772 646 PDHYA---CVVDLLGRAGKVEDAYQLINM---------MP--PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 646 ~~~~~---~li~~l~r~g~~~eA~~~~~~---------m~--~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 711 (882)
...-+ ....-+-+.+....+.+-+-. |. .+......|-.....+|..|.++.|..+.-++.+..+
T Consensus 1623 ~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~- 1701 (2382)
T KOG0890|consen 1623 EDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL- 1701 (2382)
T ss_pred ccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc-
Confidence 21110 011111122222222222211 11 2333444899999999999999999999888888774
Q ss_pred CCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 712 VASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 712 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
+..+...+......|+-..|..++++..+..
T Consensus 1702 -~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1702 -PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred -chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 6889999999999999999999998876543
No 365
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=58.86 E-value=3.1e+02 Score=31.03 Aligned_cols=181 Identities=10% Similarity=0.004 Sum_probs=106.5
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhhCCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccc
Q 002772 419 RDRYVQNALMDMYSRMGRIEISKTIFDDMEVR---DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDE 495 (882)
Q Consensus 419 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 495 (882)
++..+|+.-++.-.+.|+.+.+.-+|+....| =...|--.+.-....|+.+-|-.++..-.+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~--------------- 359 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK--------------- 359 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh---------------
Confidence 35567888888888889998888888887644 122354445444455777777766666554
Q ss_pred cccCCCCCcchHhhHHH-hhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHH---HHHhhCC--CCC
Q 002772 496 TVLRPKPNSITLMTVLP-GCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFAR---RVFDLMP--VRN 569 (882)
Q Consensus 496 ~~~~~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~---~~~~~m~--~~~ 569 (882)
-..|+......+-. -+-..|+...|+.+++.+...- +.-+.+--.-+.+.-+.|..+.+. .++.... ..+
T Consensus 360 ---i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~ 435 (577)
T KOG1258|consen 360 ---IHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKEN 435 (577)
T ss_pred ---hcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccC
Confidence 22232222222222 2344678888888888877654 222333333466777788888877 4444333 222
Q ss_pred hhhHHHHHHH-----HHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccC
Q 002772 570 VITWNVIIMA-----YGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSG 624 (882)
Q Consensus 570 ~~~~~~li~~-----~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g 624 (882)
....+.+..- +.-.++.+.|..++.+|.+. .+++..-|..++.-+...+
T Consensus 436 ~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~------~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 436 NGILEKLYVKFARLRYKIREDADLARIILLEANDI------LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc------CCccHHHHHHHHHHHHhCC
Confidence 2222222222 23357788888888888875 3455666666666554433
No 366
>PRK10941 hypothetical protein; Provisional
Probab=58.67 E-value=45 Score=34.01 Aligned_cols=65 Identities=6% Similarity=-0.125 Sum_probs=54.5
Q ss_pred HHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCch
Q 002772 651 CVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASH 715 (882)
Q Consensus 651 ~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 715 (882)
.+-..|.+.++++.|+...+.+ ...|+++.-|.--+-.+.+.|....|..-++..++..|+++.+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3556777888888888888876 4678887678888888999999999999999999999998765
No 367
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.64 E-value=2.6e+02 Score=30.06 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=60.2
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHhh-ccCCHHHHHHHHHhCCC--CCC----chhhHHHHHH
Q 002772 617 FAACSHSGMVSEGMDLFYKMKDDYGIEP--SPDHYACVVDLLG-RAGKVEDAYQLINMMPP--EFD----KAGAWSSLLG 687 (882)
Q Consensus 617 l~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~l~-r~g~~~eA~~~~~~m~~--~p~----~~~~~~~ll~ 687 (882)
+..+.+.|-+..|.++.+-+.. +.| |+...-.+||.|+ |++.++--+++++.... ..+ -++.--+..-
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 5567889999999999988874 455 4555566788775 78888878888776432 111 0011223333
Q ss_pred HHHhcCch---------------hHHHHHHHHHhcCCC
Q 002772 688 ACRIHQNV---------------EIGEIAAQNLFLLEP 710 (882)
Q Consensus 688 a~~~~~~~---------------~~a~~~~~~~~~l~p 710 (882)
|+...++. +.|....++++...|
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 34444444 889999999999988
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.75 E-value=3.7e+02 Score=31.49 Aligned_cols=88 Identities=10% Similarity=-0.047 Sum_probs=47.2
Q ss_pred hcCCChHHHHHHHHHHHHHcCCCCC-----cchHhhHHhH--hhcCCCCcchhhHHH--------HHHHhCCCCchHHHH
Q 002772 361 GQNEYDEEALMLFIKMEEVAGLWPN-----ATTMSSVVPA--CVRSEAFPDKEGIHG--------HAIKLGLGRDRYVQN 425 (882)
Q Consensus 361 ~~~g~~~~A~~l~~~m~~~~g~~p~-----~~t~~~ll~~--~~~~~~~~~a~~~~~--------~~~~~g~~~~~~~~~ 425 (882)
+-.+++..|...+..|.....-.|+ ...+...+.+ +...|+++.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 3467788888888888333222222 1233333333 234588888888886 444555555555554
Q ss_pred H--HHHHHHh--cCChHH--HHHHHhhCC
Q 002772 426 A--LMDMYSR--MGRIEI--SKTIFDDME 448 (882)
Q Consensus 426 ~--Li~~y~~--~g~~~~--A~~~~~~m~ 448 (882)
. ++-.+.. ...-++ +.++++.+.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~ 480 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIE 480 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcC
Confidence 3 1222222 222333 777777765
No 369
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.61 E-value=63 Score=26.56 Aligned_cols=65 Identities=18% Similarity=0.066 Sum_probs=41.9
Q ss_pred CCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC--CchHHHHHHHHHHcCCch-HHHHHHHHH
Q 002772 675 EFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV--ASHYVLLSNIYSSAQLWD-KAMDVRKKM 739 (882)
Q Consensus 675 ~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~-~a~~~~~~m 739 (882)
.|++....-.+...+...|+.+.|...+-.+++.+|+. ...-..|..++...|.-+ -+.+.+.+|
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 66666577778888888888888888888888877654 556667777777776633 445555544
No 370
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.42 E-value=3.1e+02 Score=30.47 Aligned_cols=165 Identities=10% Similarity=0.056 Sum_probs=92.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHH
Q 002772 537 TDVVVGSALVDMYAKCGCLNFARRVFDLMP--VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFI 614 (882)
Q Consensus 537 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~ 614 (882)
.|-...-++++.++..-+..-.+.+-.+|. ..+-..|-.++..|.++ ..++-..+|+++.+.. -|.+.+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-------fnDvv~~ 135 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-------FNDVVIG 135 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-------chhHHHH
Confidence 344445566677776666666666666665 44566677777777777 5566777777777743 4444444
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHhhccCCHHHHHHHHHhCC----CCCCchhhHHH
Q 002772 615 ALFAACSHSGMVSEGMDLFYKMKDDYGIEPS------PDHYACVVDLLGRAGKVEDAYQLINMMP----PEFDKAGAWSS 684 (882)
Q Consensus 615 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~~ 684 (882)
..+..+...++...+..+|.++.. .+.|. .+.|.-|+...+ .+.+.-+.+..+++ ...... .+.-
T Consensus 136 ReLa~~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~V-l~qd 210 (711)
T COG1747 136 RELADKYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSV-LMQD 210 (711)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHH-HHHH
Confidence 444444444777777777777764 33331 234444444332 23444444444432 111112 3333
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 002772 685 LLGACRIHQNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 685 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
+-.-|....|..++.++...+++.+-.|.-
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhcchhhh
Confidence 334455556777777777777776655443
No 371
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=56.15 E-value=94 Score=34.74 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC--CCCh---hhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 002772 543 SALVDMYAKCGCLNFARRVFDLMP--VRNV---ITWNVIIMAYGMHGEGQEVLELLKNMVAEG 600 (882)
Q Consensus 543 ~~li~~y~k~g~~~~A~~~~~~m~--~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 600 (882)
..|+.-|.+++++++|..++..|. .-.. .+.+.+.+.+.+..-..+....++.++..-
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF 474 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSF 474 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhc
Confidence 357778999999999999999997 1122 233344455555554566666666666543
No 372
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=55.46 E-value=92 Score=33.30 Aligned_cols=83 Identities=13% Similarity=0.215 Sum_probs=40.9
Q ss_pred HHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcc----cCCCccccccchhhhhhh
Q 002772 735 VRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYV----PDTSCVLHNVNEEEKETL 810 (882)
Q Consensus 735 ~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~----~~~~~~~~~~~~~~~~~~ 810 (882)
+|+.|.+..+...+..+.. ..-...|...++|. ++.+.+.++.. +|. +|.. .+|.+..- .+.
T Consensus 309 yWqamiEeAiTr~esfsVm---------YtPfatki~~d~ie-k~k~~F~k~HP-aY~~~IytD~~-glHilPqt--~~w 374 (569)
T PF15015_consen 309 YWQAMIEEAITRAESFSVM---------YTPFATKIKADKIE-KVKEVFTKTHP-AYVEYIYTDPQ-GLHILPQT--ADW 374 (569)
T ss_pred HHHHHHHHHHhcccceeEE---------eecccccccHHHHH-HHHHHHHhhCc-cceeEEecccc-eeeecccc--CCC
Confidence 3556666666666655432 11223477777776 55555555433 332 3332 34444321 111
Q ss_pred hhhhHHHHHHHHhhhcCCCCC
Q 002772 811 LCGHSEKLAIAFGILNTPPGT 831 (882)
Q Consensus 811 ~~~~se~la~~~~~~~~~~~~ 831 (882)
-++-.+.-=...|+++...|.
T Consensus 375 s~~p~qqylltlGF~nke~gk 395 (569)
T PF15015_consen 375 SSFPPQQYLLTLGFKNKEDGK 395 (569)
T ss_pred CCCCHHHHHHHhcccccccch
Confidence 123344445567777766664
No 373
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=55.20 E-value=43 Score=28.03 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHH
Q 002772 59 REAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNM 122 (882)
Q Consensus 59 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 122 (882)
-+...-++.+....+.|++....+.|++|.+..++..|.++++-+...-- .....|..++.-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 35566677777788889999999999999999999999999988764432 223366665543
No 374
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.98 E-value=1.8e+02 Score=27.16 Aligned_cols=122 Identities=12% Similarity=0.081 Sum_probs=78.6
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCcccCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh-HHHHH--HHH
Q 002772 580 YGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD-HYACV--VDL 655 (882)
Q Consensus 580 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--i~~ 655 (882)
+++.|..++|+.-|.++.+.| ..--.+ .-..........|+...|...|+++-.+ .-.|-.. -..-| .-+
T Consensus 68 lA~~~k~d~Alaaf~~lektg-----~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~l 141 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTG-----YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcC-----CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHH
Confidence 356778888888888888877 222111 1222333456778888888889888765 2233222 11222 234
Q ss_pred hhccCCHHHHHHHHHhCC--CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 656 LGRAGKVEDAYQLINMMP--PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 656 l~r~g~~~eA~~~~~~m~--~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
|...|.+++.....+.+. ..|-....-.+|.-+-.+.|++..|...|+.+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 567888888888777663 2344443566777777888888888888888776
No 375
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.75 E-value=3.7e+02 Score=32.51 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=25.3
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 002772 250 SWNTIVSSLSQNDKFLEAVMFLRQMALR 277 (882)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 277 (882)
-|..|+.-|...|..++|++++.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 5889999999999999999999998763
No 376
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.30 E-value=2.5e+02 Score=28.54 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=45.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHH
Q 002772 537 TDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIAL 616 (882)
Q Consensus 537 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~l 616 (882)
.|+.....+...|.+.|++.+|+..|-.-..++...+..++.-....|... .+|...-..+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~-------------------e~dlfi~RaV 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPS-------------------EADLFIARAV 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS---------------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCc-------------------chhHHHHHHH
Confidence 367888889999999999999998885544333333222222222222221 2222222334
Q ss_pred HHHHhccCCHHHHHHHHHHhHHh
Q 002772 617 FAACSHSGMVSEGMDLFYKMKDD 639 (882)
Q Consensus 617 l~a~~~~g~~~~a~~~~~~m~~~ 639 (882)
+. |...|++..|...++...+.
T Consensus 149 L~-yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQ-YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HH-HHHTTBHHHHHHHHHHHHHH
T ss_pred HH-HHHhcCHHHHHHHHHHHHHH
Confidence 43 34457888888888777654
No 377
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=54.12 E-value=16 Score=36.87 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=28.3
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHH-hCCCCCCch
Q 002772 622 HSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQLIN-MMPPEFDKA 679 (882)
Q Consensus 622 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~-~m~~~p~~~ 679 (882)
+.|+.++|..+|+.... +.|+ ++...-+....-...++-+|-.++- .+.+.|.+.
T Consensus 128 ~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred hccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 66777777777777663 3443 3333333333333344445554433 234555554
No 378
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.34 E-value=98 Score=26.22 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=48.4
Q ss_pred hHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 002772 199 LRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRG 278 (882)
Q Consensus 199 ~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 278 (882)
.+++..|.+++...+.....+.-.-+..+.+.|+++.|+..=.....||...|-+|-. .+.|-.+++...+.++-.+|
T Consensus 22 H~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 4455555555555554333444445556778899999966555666789999887765 46788888888888776654
No 379
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.55 E-value=2.4e+02 Score=27.84 Aligned_cols=33 Identities=9% Similarity=0.225 Sum_probs=19.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHH
Q 002772 616 LFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHY 649 (882)
Q Consensus 616 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 649 (882)
+...-+..+++.+|+.+|++.... .+..+.--|
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~-s~~n~LLKy 192 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARS-SLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hccchHHHh
Confidence 333345567777888888777653 444443333
No 380
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=51.36 E-value=23 Score=21.06 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=18.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHH
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 598 (882)
.|..+...|...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455666667777777777777777665
No 381
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.32 E-value=2.7e+02 Score=27.97 Aligned_cols=235 Identities=11% Similarity=0.155 Sum_probs=134.5
Q ss_pred cCChHHHHHHHhhCC--CC-----CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCC--Cc
Q 002772 434 MGRIEISKTIFDDME--VR-----DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKP--NS 504 (882)
Q Consensus 434 ~g~~~~A~~~~~~m~--~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p--~~ 504 (882)
..+.++|..-|+... ++ .-....-||..+.+.+++++.++.+.+|+..-.+ .+.- +.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS--------------AVTrNySE 105 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS--------------AVTRNYSE 105 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH--------------HHhccccH
Confidence 446677777776654 11 1223345788888999999999999888752112 2222 34
Q ss_pred chHhhHHHhhcCcchHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCC--
Q 002772 505 ITLMTVLPGCGALSALAKGKEIHAYAIRN-----MLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--------VRN-- 569 (882)
Q Consensus 505 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--------~~~-- 569 (882)
.+.++++.-.+...+.+.-.+++..-.+. +-..=-.+.+-|...|...|.+..-.+++.++. ..|
T Consensus 106 KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k 185 (440)
T KOG1464|consen 106 KSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK 185 (440)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh
Confidence 46677777666666666555555433321 101111234557777888888888888887764 111
Q ss_pred -----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHh-----ccCCHHHHHHHHHHhHHh
Q 002772 570 -----VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACS-----HSGMVSEGMDLFYKMKDD 639 (882)
Q Consensus 570 -----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~ 639 (882)
...|..-|..|....+-.+...+|++.+.-.. .-|.+ ....++.-|. +.|.+++|-.-|-++.+.
T Consensus 186 KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKS----AIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 186 KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKS----AIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhc----cCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 24566667778888888888888888776431 22333 3455666663 467788876544444443
Q ss_pred cCCCCChh-----HHHHHHHHhhccCC----HHHHHHHHHhCCCCCCchhhHHHHHHHHHhc
Q 002772 640 YGIEPSPD-----HYACVVDLLGRAGK----VEDAYQLINMMPPEFDKAGAWSSLLGACRIH 692 (882)
Q Consensus 640 ~~~~p~~~-----~~~~li~~l~r~g~----~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~ 692 (882)
|.-.-++. -|-.|.+++.+.|- -.||.- -...|... +...|+.+|...
T Consensus 261 YDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEIl-AMTnlv~aYQ~N 317 (440)
T KOG1464|consen 261 YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEIL-AMTNLVAAYQNN 317 (440)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHHH-HHHHHHHHHhcc
Confidence 43322222 25556677776652 122211 11234444 677788887543
No 382
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=51.04 E-value=87 Score=32.18 Aligned_cols=169 Identities=13% Similarity=0.120 Sum_probs=83.3
Q ss_pred cCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhhHH--HHHHHHHccCChhHHH
Q 002772 515 GALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVR--NVITWN--VIIMAYGMHGEGQEVL 590 (882)
Q Consensus 515 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~--~~~~~~--~li~~~~~~g~~~~A~ 590 (882)
....-+.+|+.++..+.+.+- ..|+ +......--...+.+.++ |+.+|- .|..+-.+.|+..+|.
T Consensus 227 EEa~Ti~~AE~l~k~ALka~e----~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 227 EEATTIVDAERLFKQALKAGE----TIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhhhhHHHHHHHHHHHHHHHH----HHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHH
Confidence 344557778888888777651 1222 111111111112223333 344442 3445556789999999
Q ss_pred HHHHHHHHcCCCCCcccCChh---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHH
Q 002772 591 ELLKNMVAEGSRGGEVKPNEV---TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQ 667 (882)
Q Consensus 591 ~l~~~m~~~g~~~~~~~pd~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~ 667 (882)
+.|+++.+.- |=.. ....|+.+|....-+.+...++.+.-+- .. |...+ -|.-.++.+ +..
T Consensus 296 K~~RDL~ke~-------pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-sl-PkSA~-icYTaALLK------~RA 359 (556)
T KOG3807|consen 296 KIMRDLMKEF-------PLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-SL-PKSAA-ICYTAALLK------TRA 359 (556)
T ss_pred HHHHHHhhhc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cC-cchHH-HHHHHHHHH------HHH
Confidence 9998887643 4222 2235666766655555555554443321 11 22111 111222222 222
Q ss_pred HHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHH
Q 002772 668 LINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLL 719 (882)
Q Consensus 668 ~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 719 (882)
+-++ +.|+.. +-.-|-.+ -..|.++..++.|.+|+.|.+...+
T Consensus 360 Va~k--Fspd~a-srRGLS~A------E~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 360 VSEK--FSPETA-SRRGLSTA------EINAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HHhh--cCchhh-hhccccHH------HHHHHHHHHHHhhcCCCCcHHHHHH
Confidence 2222 245544 22222211 1246778889999999988765533
No 383
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.79 E-value=1.2e+02 Score=30.73 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=59.1
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 002772 577 IMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLL 656 (882)
Q Consensus 577 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l 656 (882)
|.+++..|++.+++...-+--+.- ..++|...-..++ .|++.|......++-...... .-.-+..-|..++.+|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~p---EklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVP---EKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELY 163 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCc---ccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHH
Confidence 677888888888877654433211 0044444444333 478889988888888887765 2233344588877776
Q ss_pred h-----ccCCHHHHHHHHHhC
Q 002772 657 G-----RAGKVEDAYQLINMM 672 (882)
Q Consensus 657 ~-----r~g~~~eA~~~~~~m 672 (882)
. -.|.++||++++..-
T Consensus 164 Ll~VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHHHHhccccHHHHHHHHhcC
Confidence 5 479999999998543
No 384
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=50.38 E-value=90 Score=29.99 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--CCCChhHHHHHHHHhhccCCHHH
Q 002772 587 QEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYG--IEPSPDHYACVVDLLGRAGKVED 664 (882)
Q Consensus 587 ~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~l~r~g~~~e 664 (882)
++|.+.|-++...+ .--+......|...|. ..+.++++.++....+.+. -.+|++.+..|+..+-+.|+++.
T Consensus 123 ~~A~~~fL~~E~~~-----~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 123 QEALRRFLQLEGTP-----ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred HHHHHHHHHHcCCC-----CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 45666666666555 2323333333333333 4566777776666665322 23556666667777666666666
Q ss_pred HH
Q 002772 665 AY 666 (882)
Q Consensus 665 A~ 666 (882)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 53
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.36 E-value=28 Score=27.51 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=31.2
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHH
Q 002772 622 HSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQL 668 (882)
Q Consensus 622 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~ 668 (882)
+....++|+..|....++.--.|+ -.+..+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888777765222222 33567777778888888777665
No 386
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.80 E-value=1.9e+02 Score=25.83 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhc-CCCCCCchH-HHHHHHHHHcCCchHHHHHHHHH
Q 002772 695 VEIGEIAAQNLFL-LEPDVASHY-VLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 695 ~~~a~~~~~~~~~-l~p~~~~~~-~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
+.++..+++.+++ -.|+...-| ..|+-.+++.|+++++.++.+..
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 3445555555554 223222111 12333344444444444444433
No 387
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.20 E-value=5.1e+02 Score=30.53 Aligned_cols=184 Identities=14% Similarity=0.037 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHH-HHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHH
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMPV--RNVITWNV-IIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALF 617 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll 617 (882)
+...-+..-.+.++++.+...|..|+. .+...|.- +..++...|+.++|...|++... + .+|-.++
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---------~--~~fYG~L 382 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---------Q--RGFYPMV 382 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---------C--CCcHHHH
Confidence 334444455567777777777777751 12222221 34444556777777777777632 1 2344444
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCh------hHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHh
Q 002772 618 AACSHSGMVSEGMDLFYKMKDDYGIEPSP------DHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRI 691 (882)
Q Consensus 618 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~ 691 (882)
.+-. .|..-. ... ...|.. .---.-+..|...|+..+|...+..+....+.. ....+...-..
T Consensus 383 Aa~~-Lg~~~~-~~~--------~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~-~~~~la~~A~~ 451 (644)
T PRK11619 383 AAQR-LGEEYP-LKI--------DKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKT-EQAQLARYAFN 451 (644)
T ss_pred HHHH-cCCCCC-CCC--------CCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH
Confidence 3211 121100 000 000000 001112455667788888888777654344434 55566666677
Q ss_pred cCchhHHHHHHHHHhcCC---CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 002772 692 HQNVEIGEIAAQNLFLLE---PDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRK 746 (882)
Q Consensus 692 ~~~~~~a~~~~~~~~~l~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~ 746 (882)
.|..+.+..+..+....+ -..|..|.-...-++..-..+.+.-.--...|.+..+
T Consensus 452 ~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 452 QQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNP 509 (644)
T ss_pred CCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCC
Confidence 788888877775433211 1223445555566666556666553222223445433
No 388
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=48.39 E-value=58 Score=31.55 Aligned_cols=66 Identities=15% Similarity=0.064 Sum_probs=49.9
Q ss_pred HHHHHHHhhccCCHHHHHHHHH-hCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 002772 649 YACVVDLLGRAGKVEDAYQLIN-MMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 649 ~~~li~~l~r~g~~~eA~~~~~-~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
...-+..+.+.+++.+|+...+ ....+|.+...--.|..-++.-|+.++|..-.+-+-++.|++..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3444567778888888887665 45667777756667778888888888888888888888887654
No 389
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.18 E-value=72 Score=31.32 Aligned_cols=63 Identities=14% Similarity=-0.008 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhcCchh-------HHHHHHHHHhcCCC------CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 681 AWSSLLGACRIHQNVE-------IGEIAAQNLFLLEP------DVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~-------~a~~~~~~~~~l~p------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
.+--+.+.|+..|+-+ .|...++++++.+. +......+++.++.+.|++++|.+.+.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 5666677788888754 44455555555442 223567789999999999999999999886654
No 390
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.17 E-value=24 Score=21.67 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=20.9
Q ss_pred CchhHHHHHHHHHhcCCCCCCchHHHHHH
Q 002772 693 QNVEIGEIAAQNLFLLEPDVASHYVLLSN 721 (882)
Q Consensus 693 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 721 (882)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677788888888888877776665544
No 391
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.99 E-value=99 Score=30.55 Aligned_cols=54 Identities=9% Similarity=-0.055 Sum_probs=44.0
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 689 CRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 689 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+...|++-++++....++..+|++..+|.--+...+..-+.++|.+-+.+..+.
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 345667778888888899999999999999999988888888888777766553
No 392
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=46.66 E-value=5.4e+02 Score=30.13 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhcCC---CCCCc-hH-----HHHHHHHHHcCCchHHHHHHHHHH
Q 002772 683 SSLLGACRIHQNVEIGEIAAQNLFLLE---PDVAS-HY-----VLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 683 ~~ll~a~~~~~~~~~a~~~~~~~~~l~---p~~~~-~~-----~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
-++++.-.-.|++.+.......++.+. |+... .| ..+.+.|...|+.++|...+.+..
T Consensus 538 L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 538 LNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 344444333677766555555455443 33232 22 255567888999999998887654
No 393
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=46.39 E-value=40 Score=34.30 Aligned_cols=77 Identities=5% Similarity=-0.032 Sum_probs=49.7
Q ss_pred ChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHH-HHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHH
Q 002772 645 SPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSS-LLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSN 721 (882)
Q Consensus 645 ~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~-ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 721 (882)
|+..|.-.+.-..+.|.+.+...++.+. ...|.+++.|-. -..-+..++|++-++..+.+.+.++|++|..+.....
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 3333443333333444444444444433 347877778855 3334678899999999999999999999988765433
No 394
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.37 E-value=28 Score=33.87 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=42.9
Q ss_pred HhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 002772 655 LLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA 713 (882)
Q Consensus 655 ~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 713 (882)
++.+.|+.+.|.+++++. ...|+....|-.+...-.+.|+++.|..++++.++++|+|-
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345567777777777665 34566655788887777888888888888888888888653
No 395
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.64 E-value=4.2e+02 Score=29.27 Aligned_cols=210 Identities=14% Similarity=0.163 Sum_probs=122.2
Q ss_pred cCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH--HHhhC----CCC-----------ChhhHHHHH
Q 002772 515 GALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARR--VFDLM----PVR-----------NVITWNVII 577 (882)
Q Consensus 515 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~--~~~~m----~~~-----------~~~~~~~li 577 (882)
-..+.++...+..+.+...|.....+.+|.-+..|.+.|....-.. -++.+ ..| +.+.+-...
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~a 107 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFA 107 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhh
Confidence 3457788889999999999988888889999999999887543221 11111 111 122233333
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCcccCC------hhHHHHHHHHHhccCCHHHHHHHHHH---hHHhcCCCCChhH
Q 002772 578 MAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN------EVTFIALFAACSHSGMVSEGMDLFYK---MKDDYGIEPSPDH 648 (882)
Q Consensus 578 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd------~~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~~~~ 648 (882)
..|..+..+..|+++....... +.|= .+++..+. .+......++|+.++.- |...-...|
T Consensus 108 Vi~yh~~~~g~a~~~~~~lv~r------~e~le~~~aa~v~~l~~~-l~~~t~q~e~al~~l~vL~~~~~~~~~~~---- 176 (696)
T KOG2471|consen 108 VIFYHHEENGSAMQLSSNLVSR------TESLESSSAASVTLLSDL-LAAETSQCEEALDYLNVLAEIEAEKRMKL---- 176 (696)
T ss_pred eeeeeHhhcchHHHhhhhHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccc----
Confidence 4455566777788776666543 2232 22333222 23334455666655443 333212222
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhCC----------CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHH
Q 002772 649 YACVVDLLGRAGKVEDAYQLINMMP----------PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVL 718 (882)
Q Consensus 649 ~~~li~~l~r~g~~~eA~~~~~~m~----------~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 718 (882)
.|+-..+-.+.+..+ ..|... +-.--..++....++..+.+-.+.+....-+.+.+..+
T Consensus 177 ----------~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~-~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~L 245 (696)
T KOG2471|consen 177 ----------VGNHIPANNLLKTLSPSAAERSFSTADLKLE-LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLL 245 (696)
T ss_pred ----------cccccchhhhcccCCcchhcccchhhccchh-hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHH
Confidence 233333333333332 011111 22222345566677888888888888888888888888
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCCccCCc
Q 002772 719 LSNIYSSAQLWDKAMDVRKKMKEMGVRKEPG 749 (882)
Q Consensus 719 l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~ 749 (882)
-++.+...|++.+|.+++.. .++.+.+|
T Consensus 246 Ksq~eY~~gn~~kA~KlL~~---sni~~~~g 273 (696)
T KOG2471|consen 246 KSQLEYAHGNHPKAMKLLLV---SNIHKEAG 273 (696)
T ss_pred HHHHHHHhcchHHHHHHHHh---cccccccC
Confidence 99999999999999977654 34444444
No 396
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.87 E-value=7e+02 Score=30.91 Aligned_cols=140 Identities=14% Similarity=-0.004 Sum_probs=62.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHH
Q 002772 537 TDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIAL 616 (882)
Q Consensus 537 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~l 616 (882)
+|..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... ..+|...=...
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l--------~D~~~~VR~~a 762 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA--------TDENREVRIAV 762 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh--------cCCCHHHHHHH
Confidence 3444444445555443211 12233344445555555555555555443321 11221 13444443444
Q ss_pred HHHHhccCCHHH-HHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCc
Q 002772 617 FAACSHSGMVSE-GMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQN 694 (882)
Q Consensus 617 l~a~~~~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~ 694 (882)
..++...+..+. +...+..+.. .++...-...+..|++.|.-+.+...+..+...++.. +-..-+.++...+.
T Consensus 763 a~aL~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~-VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 763 AKGLATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQ-VRQGAARALAGAAA 836 (897)
T ss_pred HHHHHHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChH-HHHHHHHHHHhccc
Confidence 445544443322 2333334433 2456666666777777666544433333332234333 44444555544443
No 397
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=44.57 E-value=38 Score=22.21 Aligned_cols=31 Identities=10% Similarity=-0.190 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCchhHHHHH--HHHHhcCCCC
Q 002772 681 AWSSLLGACRIHQNVEIGEIA--AQNLFLLEPD 711 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~--~~~~~~l~p~ 711 (882)
.|-++...+...|+.+.|+.+ ++-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 466677777777777777777 4466666654
No 398
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.36 E-value=2.5e+02 Score=25.55 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhcCCC---------CCcccHHHHHHHHHcCCC-hHHHHHHHHHHHHCCCCCChhhHh
Q 002772 218 FIMNALMAMYAKLGRVDDAKTLFKSFED---------RDLVSWNTIVSSLSQNDK-FLEAVMFLRQMALRGIKPDGVSIA 287 (882)
Q Consensus 218 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~ 287 (882)
...|.++.-....+++....++++.+.. .+-.+|++++.+..+..- ---+..+|.-|++.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3456666666666777777777666542 356688999999876665 445778889998888888888999
Q ss_pred hHHHHhccC
Q 002772 288 SVLPACSHL 296 (882)
Q Consensus 288 ~ll~a~~~~ 296 (882)
.++++|.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 999988765
No 399
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.81 E-value=3.3e+02 Score=26.82 Aligned_cols=95 Identities=18% Similarity=0.275 Sum_probs=59.0
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC---ChhHH--HHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 002772 569 NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP---NEVTF--IALFAACSHSGMVSEGMDLFYKMKDDYGIE 643 (882)
Q Consensus 569 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p---d~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 643 (882)
...-.|.||--|.-+..+.+|.+.|.. +.| ++| |..++ ..-+......|++++|++...+.... -+.
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~-----i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd 96 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAK--ESG-----IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILD 96 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhcc--ccC-----CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHc
Confidence 334456676666666666667766654 334 444 23333 33456667889999999888877654 444
Q ss_pred CChhHHHHHHH----HhhccCCHHHHHHHHHh
Q 002772 644 PSPDHYACVVD----LLGRAGKVEDAYQLINM 671 (882)
Q Consensus 644 p~~~~~~~li~----~l~r~g~~~eA~~~~~~ 671 (882)
-|.+.+-.|.. =+.|.|..++|+++.+.
T Consensus 97 ~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 97 TNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45433333322 24689999999999875
No 400
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.53 E-value=1.4e+02 Score=32.20 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=66.3
Q ss_pred ChhHHHHHHHHhhccCCHHHHHHHHHhC----------CC-----------------CCCchhhHHHH---HHHHHhcCc
Q 002772 645 SPDHYACVVDLLGRAGKVEDAYQLINMM----------PP-----------------EFDKAGAWSSL---LGACRIHQN 694 (882)
Q Consensus 645 ~~~~~~~li~~l~r~g~~~eA~~~~~~m----------~~-----------------~p~~~~~~~~l---l~a~~~~~~ 694 (882)
-++++-.+.+.+.+.|+.+.|.+++++. .+ .+.+...|.+| +....+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 3445555566667777777776666643 11 23333356655 456778889
Q ss_pred hhHHHHHHHHHhcCCCC-CCchHHHHHHHHHH-cCCchHHHHHHHHHHh
Q 002772 695 VEIGEIAAQNLFLLEPD-VASHYVLLSNIYSS-AQLWDKAMDVRKKMKE 741 (882)
Q Consensus 695 ~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y~~-~g~~~~a~~~~~~m~~ 741 (882)
..-|.+.++-++.++|. ||-.-..+++.|+- +++++--.++.+....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 99999999999999998 88877777777764 4567767777776544
No 401
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.42 E-value=39 Score=23.35 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 717 VLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 717 ~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357888999999999999998877544
No 402
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.16 E-value=3.8e+02 Score=27.32 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=34.5
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCcccCChh-------HHHHHHHHHhccCCHHHHHHHH
Q 002772 578 MAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-------TFIALFAACSHSGMVSEGMDLF 633 (882)
Q Consensus 578 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-------t~~~ll~a~~~~g~~~~a~~~~ 633 (882)
+-..+.+++++|+..+.+.+..| +..|.. |...+...|...|+...-.+..
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg-----~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKG-----VSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCC-----CChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 33456688999999999999988 655543 4555666677767655444433
No 403
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.90 E-value=1.8e+02 Score=24.92 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHH
Q 002772 571 ITWNVIIMAYGMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 571 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 598 (882)
.-|..|+.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4688999999999999999999999887
No 404
>PHA02875 ankyrin repeat protein; Provisional
Probab=41.78 E-value=4.4e+02 Score=28.92 Aligned_cols=78 Identities=13% Similarity=-0.038 Sum_probs=38.8
Q ss_pred hcCCChHHHHHHHHHHHHHcCCCCCcch--HhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchH--HHHHHHHHHHhcCC
Q 002772 361 GQNEYDEEALMLFIKMEEVAGLWPNATT--MSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRY--VQNALMDMYSRMGR 436 (882)
Q Consensus 361 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~ 436 (882)
++.|+.+-+. .+ ...|..|+... ..+.+..++..++. ++.+.+.+.|..++.. ...+-+...++.|+
T Consensus 10 ~~~g~~~iv~----~L-l~~g~~~n~~~~~g~tpL~~A~~~~~~----~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 10 ILFGELDIAR----RL-LDIGINPNFEIYDGISPIKLAMKFRDS----EAIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHhCCHHHHH----HH-HHCCCCCCccCCCCCCHHHHHHHcCCH----HHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 4456654433 33 33566666532 23344444455554 3455555666554422 11233444556677
Q ss_pred hHHHHHHHhhC
Q 002772 437 IEISKTIFDDM 447 (882)
Q Consensus 437 ~~~A~~~~~~m 447 (882)
.+.+..+++.-
T Consensus 81 ~~~v~~Ll~~~ 91 (413)
T PHA02875 81 VKAVEELLDLG 91 (413)
T ss_pred HHHHHHHHHcC
Confidence 76666666543
No 405
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=41.41 E-value=4.5e+02 Score=27.73 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 002772 586 GQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDL 655 (882)
Q Consensus 586 ~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 655 (882)
.+.-+.++++.++.+ |+ ......++..+.+....++..+-++++... .+-+...|...++.
T Consensus 47 ~E~klsilerAL~~n-------p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 47 AERKLSILERALKHN-------PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHH
Confidence 456677788877754 44 445566677777777777777777777764 11134444444443
No 406
>PRK14015 pepN aminopeptidase N; Provisional
Probab=41.35 E-value=6.6e+02 Score=30.88 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=72.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcC
Q 002772 615 ALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 615 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~ 693 (882)
+-+.++.+.+. .+..+.++...+++.-.|- ..-|-.+.-.-.+.+-++...++.+.-.+.+.+++-.++|++++...+
T Consensus 719 ~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n 797 (875)
T PRK14015 719 AALSALVNADL-PERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAAN 797 (875)
T ss_pred HHHHHHhcCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcC
Confidence 34444444333 2333344444443333343 333444444434444456666666655566666667799999985443
Q ss_pred c-------hhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHH
Q 002772 694 N-------VEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMD 734 (882)
Q Consensus 694 ~-------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 734 (882)
. -+.=.-+++.++++++-||.+-.-|...+..-.++++..+
T Consensus 798 ~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~ 845 (875)
T PRK14015 798 PAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQ 845 (875)
T ss_pred CcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHH
Confidence 2 2334556788999999999998889999888888887664
No 407
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=40.89 E-value=6.4e+02 Score=30.92 Aligned_cols=119 Identities=12% Similarity=0.045 Sum_probs=71.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcC
Q 002772 615 ALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 615 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~ 693 (882)
+-+.++.+.+. .+....++...+++.-.|- ..-|-.+.-.-.+.+-++...++.+.-.+.+.+++-.++|++++...+
T Consensus 709 ~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n 787 (863)
T TIGR02414 709 AALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSPRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNN 787 (863)
T ss_pred HHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCCcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcC
Confidence 33444443333 2333344444443333343 233444433333444555566665555566666657799999986433
Q ss_pred c-------hhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHH
Q 002772 694 N-------VEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMD 734 (882)
Q Consensus 694 ~-------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 734 (882)
. -+.=.-+++.+++++|-||.+-.-|...+..=.++++..+
T Consensus 788 ~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~~~r~ 835 (863)
T TIGR02414 788 LVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLDPKRQ 835 (863)
T ss_pred cccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCCHHHH
Confidence 2 2334556788999999999998889999988888887664
No 408
>PF15161 Neuropep_like: Neuropeptide-like
Probab=40.51 E-value=12 Score=26.59 Aligned_cols=18 Identities=33% Similarity=0.794 Sum_probs=12.8
Q ss_pred EcccccCcchhHhhhhhhc
Q 002772 836 AKNLRVCNDCHQATKFISK 854 (882)
Q Consensus 836 ~~n~~~c~~~h~~~~~~s~ 854 (882)
----|-|.|||.+- |+..
T Consensus 10 PaesRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 10 PAESRPCVDCHAFE-FMQR 27 (65)
T ss_pred cCCCCCchhhHHHH-HHHH
Confidence 34578899999765 5543
No 409
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=39.83 E-value=6e+02 Score=28.73 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=67.4
Q ss_pred hhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC-chHHHHHHHHH
Q 002772 646 PDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA-SHYVLLSNIYS 724 (882)
Q Consensus 646 ~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~ 724 (882)
+..-.||-+-+..+.++.-|.++.++-. -|...+|.+..-+|.+.+|+..|+.-|++++++.-.|. ....-+.| .-
T Consensus 556 ~~asecLRdqLie~ErYqlaV~mckKc~--iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin-~i 632 (1141)
T KOG1811|consen 556 PAASECLRDQLIEAERYQLAVEMCKKCG--IDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIIN-LI 632 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHH-hh
Confidence 3445677777888888888888887764 34445999999999999999999999999999875443 33333333 33
Q ss_pred HcCCchHHHHHHHHHHhCCCccCC
Q 002772 725 SAQLWDKAMDVRKKMKEMGVRKEP 748 (882)
Q Consensus 725 ~~g~~~~a~~~~~~m~~~g~~~~~ 748 (882)
.-|-.-++..+++ |-+.-.++.|
T Consensus 633 eGgpp~dVq~Vre-m~dhlak~ap 655 (1141)
T KOG1811|consen 633 EGGPPRDVQDVRE-MLDHLAKPAP 655 (1141)
T ss_pred cCCCcchHHHHHH-HHHHhccCCc
Confidence 3443344444444 5455555555
No 410
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.08 E-value=60 Score=22.47 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=18.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcC
Q 002772 576 IIMAYGMHGEGQEVLELLKNMVAEG 600 (882)
Q Consensus 576 li~~~~~~g~~~~A~~l~~~m~~~g 600 (882)
|..+|...|+.+.|.+++++.+..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5667777788888888888777655
No 411
>PF15469 Sec5: Exocyst complex component Sec5
Probab=38.99 E-value=1.7e+02 Score=27.74 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=15.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHh
Q 002772 616 LFAACSHSGMVSEGMDLFYKMKDD 639 (882)
Q Consensus 616 ll~a~~~~g~~~~a~~~~~~m~~~ 639 (882)
-|.-|.+.|+++.+...|.++...
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHH
Confidence 445566667777777777666554
No 412
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=38.43 E-value=3.6e+02 Score=29.56 Aligned_cols=86 Identities=16% Similarity=0.093 Sum_probs=39.2
Q ss_pred hccCCHHHHHHHHHhCC--CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHH
Q 002772 657 GRAGKVEDAYQLINMMP--PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMD 734 (882)
Q Consensus 657 ~r~g~~~eA~~~~~~m~--~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 734 (882)
...|.++.|...+.... ....+. ....++......|+.+.|...++.++.-+-+++.+...-+-.--+.|-+|++.-
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~-~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDS-TLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCch-HHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 34455555555554431 112222 444445555555555555555555555444444333222222233344555555
Q ss_pred HHHHHHhCC
Q 002772 735 VRKKMKEMG 743 (882)
Q Consensus 735 ~~~~m~~~g 743 (882)
.+++.-...
T Consensus 413 ~wk~~~~~~ 421 (831)
T PRK15180 413 YWKRVLLLN 421 (831)
T ss_pred HHHHHhccC
Confidence 555554433
No 413
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.33 E-value=41 Score=29.73 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=26.1
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 002772 156 CRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALAC 190 (882)
Q Consensus 156 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 190 (882)
-..|.-..|-.+|+.|+.+|-.|| .|+.||..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345777889999999999999997 466666654
No 414
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.26 E-value=1.6e+02 Score=25.11 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002772 249 VSWNTIVSSLSQNDKFLEAVMFLRQMAL 276 (882)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 276 (882)
.-|..++.-|-..|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4689999999999999999999998877
No 415
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.54 E-value=99 Score=21.81 Aligned_cols=35 Identities=9% Similarity=-0.080 Sum_probs=28.5
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002772 155 LCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALA 189 (882)
Q Consensus 155 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 189 (882)
..+.|-..++..++++|.+.|+..+...+..+++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 35678888999999999999998888887777654
No 416
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=37.52 E-value=88 Score=24.86 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=35.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHH
Q 002772 582 MHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLF 633 (882)
Q Consensus 582 ~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~ 633 (882)
...+.++|+..|+..++.-. -.|+ -.++..++.+++..|++++.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKIT----DREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999888641 1223 246778889999999998888763
No 417
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.03 E-value=2.6e+02 Score=26.72 Aligned_cols=56 Identities=9% Similarity=-0.018 Sum_probs=37.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC------CCChhhHHHHHH-HHHccCC--hhHHHHHHHHHHHcC
Q 002772 545 LVDMYAKCGCLNFARRVFDLMP------VRNVITWNVIIM-AYGMHGE--GQEVLELLKNMVAEG 600 (882)
Q Consensus 545 li~~y~k~g~~~~A~~~~~~m~------~~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~g 600 (882)
-.-.....|++++|..-++++. +.-...|..+.. +|+.++. +.+|.-+|.-....+
T Consensus 35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~ 99 (204)
T COG2178 35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGR 99 (204)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCC
Confidence 3334556788999998888775 334566777666 7887775 567777776665544
No 418
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.89 E-value=1.5e+02 Score=28.01 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=22.3
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCch
Q 002772 685 LLGACRIHQNVEIGEIAAQNLFLLEPDVASH 715 (882)
Q Consensus 685 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 715 (882)
....|.+.|.+++|++++++.++ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 45568888888888888888888 7765443
No 419
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.71 E-value=1.8e+02 Score=25.52 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 002772 588 EVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVD 654 (882)
Q Consensus 588 ~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 654 (882)
|..+-++.....+ +.|+......-+.||.+.+++..|..+|+-.+.+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yD-----lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYD-----LVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccc-----cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 3444555666666 8899999999999999999999999999988764 3344445665553
No 420
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.34 E-value=1.1e+02 Score=33.27 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
++++-++.+.+++|+.-|-..+++++++.|..
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 56667788899999999999999999999864
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.29 E-value=1.1e+02 Score=29.53 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=17.9
Q ss_pred CCCCChhHHHHHHHHhhccCCHHHHHHHHHhC
Q 002772 641 GIEPSPDHYACVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 641 ~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m 672 (882)
...|++..|..++.++...|+.++|.+...++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33455555555555555555555555555544
No 422
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.16 E-value=4.3e+02 Score=28.98 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=73.6
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHH-H--HHhcCChHHHHHHHHHHHhCC---CCCC
Q 002772 3 SSAQCLTLLPSPPLSSLQTHQPPATTATSLPLPGSQTRCKESWIESLR-S--EARSNQFREAILSYIEMTRSD---IQPD 76 (882)
Q Consensus 3 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~--~~~~~~~~~a~~~~~~m~~~g---~~p~ 76 (882)
+|-.++|..|..|+-.....+......+...+|.. ..+.......|. + +...|.+.+|+..|+.+...= +.-+
T Consensus 163 ~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i-~~~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~ 241 (422)
T PF06957_consen 163 ASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAI-PLSLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVES 241 (422)
T ss_dssp CTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB-----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSS
T ss_pred hhceecccCCCCCCccccccCCccccccccCCCcC-cCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecC
Confidence 45566666666655443333322222111111111 122223333333 2 457899999999999886641 1111
Q ss_pred C---ccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChh---HHhHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHH
Q 002772 77 N---FAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVT---VANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNS 150 (882)
Q Consensus 77 ~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~ 150 (882)
. .-...+|..|. .+-.|..+ ++.+..+. .+.. --+.-+.+|.-+- ++.-.-.++ +..+
T Consensus 242 ~~E~~e~~eli~icr---EYilgl~i--El~Rr~l~-~~~~~~~kR~lELAAYFThc-~LQp~H~~L---------aLr~ 305 (422)
T PF06957_consen 242 REEEDEAKELIEICR---EYILGLSI--ELERRELP-KDPVEDQKRNLELAAYFTHC-KLQPSHLIL---------ALRS 305 (422)
T ss_dssp CHHHHHHHHHHHHHH---HHHHHHHH--HHHHCTS--TTTHHHHHHHHHHHHHHCCS----HHHHHH---------HHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHH--HHHHHhcc-ccchhhHHHHHHHHHHHhcC-CCcHHHHHH---------HHHH
Confidence 1 12444555543 23333332 33344433 2211 2344456665544 443333322 3455
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 002772 151 MIATLCRFGKWDLALEAFRMMLYSNVEP 178 (882)
Q Consensus 151 li~~~~~~g~~~~A~~~~~~m~~~g~~p 178 (882)
-|+...|.+++..|-.+-+++++.+..|
T Consensus 306 AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 306 AMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 6666678889999999999988765433
No 423
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=34.39 E-value=7.9e+02 Score=28.48 Aligned_cols=63 Identities=6% Similarity=0.036 Sum_probs=39.5
Q ss_pred CChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCC-ceeHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 002772 111 SSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKD-QVSWNSMIATLCRFGKWDLALEAFRMMLYSNV 176 (882)
Q Consensus 111 ~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 176 (882)
+.+..++.|++..... +.++-..++.++.. . ...|..++.+....|-.....-+.+.+....+
T Consensus 308 ~~~~~f~~lv~~lR~~--~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 308 PAAAKFLRLVRLLRTL--SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred chHHHHHHHHHHHHhC--CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 3455667777776665 46666777766654 3 56778888888888866555555554444333
No 424
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.17 E-value=35 Score=25.70 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=10.0
Q ss_pred HHHHHHccCChhHHHHHHHHHH
Q 002772 576 IIMAYGMHGEGQEVLELLKNMV 597 (882)
Q Consensus 576 li~~~~~~g~~~~A~~l~~~m~ 597 (882)
+|.||.+.|++++|.++.+++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444455555544444443
No 425
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.11 E-value=2.1e+02 Score=28.40 Aligned_cols=64 Identities=11% Similarity=0.028 Sum_probs=45.4
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 649 YACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 649 ~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
+..+..++...|.+-++++-..++ ...|++..++-.-..|-...=|..+|+.-+.++++++|.-
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 444556677778888888777665 3456665455555555555558899999999999999953
No 426
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=33.47 E-value=5.5e+02 Score=26.39 Aligned_cols=47 Identities=11% Similarity=-0.039 Sum_probs=26.5
Q ss_pred chhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcC---------------CchHHHHHHHHHHhCC
Q 002772 694 NVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ---------------LWDKAMDVRKKMKEMG 743 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g---------------~~~~a~~~~~~m~~~g 743 (882)
|.+.|...++++-+... ......++ ++...| ++..|...+......+
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 55666666666666655 34444444 444444 5556666666655554
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.38 E-value=99 Score=23.25 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=21.4
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 002772 608 PNEVTFIALFAACSHSGMVSEGMDLFYKMKDD 639 (882)
Q Consensus 608 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 639 (882)
=|-.--..++.++...|++++|.++.+.+...
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444556777778888888888877777653
No 428
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.24 E-value=1.1e+02 Score=21.56 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=24.1
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHH
Q 002772 257 SLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLP 291 (882)
Q Consensus 257 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 291 (882)
...+.|-..++..++++|.+.|+..+...|..+++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34456777777778888877777777666655554
No 429
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=33.13 E-value=1.9e+02 Score=29.58 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=34.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 002772 574 NVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMK 637 (882)
Q Consensus 574 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 637 (882)
+.....|...|.+.+|.++-++.+..+ +.+...+-.++..+...|+--.+.+-++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld------pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD------PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334455666777777777777776643 3445555666666666676555555554443
No 430
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=32.63 E-value=4.4e+02 Score=26.24 Aligned_cols=82 Identities=12% Similarity=-0.049 Sum_probs=52.3
Q ss_pred HHhcCCHHHHHHHHhhCC--CCChhh-HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHH-HHHHHHHhccC
Q 002772 549 YAKCGCLNFARRVFDLMP--VRNVIT-WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTF-IALFAACSHSG 624 (882)
Q Consensus 549 y~k~g~~~~A~~~~~~m~--~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~-~~ll~a~~~~g 624 (882)
|....++..|...+.+.. .|++.+ |+.-+..|.+..+++.+.+--.+.++ +.||.+-= ..+..+.....
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq-------l~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ-------LDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh-------cChHHHHHHHHHHHHHHhhc
Confidence 444456677777666554 677744 45677777777777777777777766 55776533 33334455666
Q ss_pred CHHHHHHHHHHhH
Q 002772 625 MVSEGMDLFYKMK 637 (882)
Q Consensus 625 ~~~~a~~~~~~m~ 637 (882)
.+++|+..+.+..
T Consensus 93 ~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 93 GYDEAIKVLQRAY 105 (284)
T ss_pred cccHHHHHHHHHH
Confidence 6777777766653
No 431
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.56 E-value=5.1e+02 Score=25.70 Aligned_cols=115 Identities=12% Similarity=0.122 Sum_probs=64.0
Q ss_pred hcCCHHHHHHHHhhCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHH
Q 002772 551 KCGCLNFARRVFDLMP-VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEG 629 (882)
Q Consensus 551 k~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a 629 (882)
..+++++|...+-.-. .|+... -++.++...|+.+.|+.+++.+.-.. .+......++.+ ...+.+.||
T Consensus 90 D~~~~~~A~~~L~~ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~l-------~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLIPWFPD--KILQALLRRGDPKLALRYLRAVGPPL-------SSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred ChHhHHHHHHHhCCCCCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCCC-------CCHHHHHHHHHH-HHcCCHHHH
Confidence 3467777777774432 222222 36777777899999998888743211 112222333344 445888999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCch
Q 002772 630 MDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKA 679 (882)
Q Consensus 630 ~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~ 679 (882)
..+-+...+. -....+..++..+.....-....+.+-.+|..+..-
T Consensus 160 f~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 160 FSFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred HHHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 8887766542 114456666666654332233344445556554443
No 432
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=5.6e+02 Score=26.18 Aligned_cols=33 Identities=9% Similarity=0.250 Sum_probs=25.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCChhhH
Q 002772 254 IVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSI 286 (882)
Q Consensus 254 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 286 (882)
+.+-.++.+++++|+..+.+....|+..|..|.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 345567778889999999999888887776653
No 433
>PRK09169 hypothetical protein; Validated
Probab=32.41 E-value=1.5e+03 Score=31.00 Aligned_cols=533 Identities=10% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCC-----CChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcC-----CCch
Q 002772 148 WNSMIATLCRFGKWDLALEAFRMMLYSNVE-----PSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVG-----EWNT 217 (882)
Q Consensus 148 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~ 217 (882)
|..+...+++.-+.....+.+...-..-.. .|...+..+|+++++=.....-..+-......+... ..+.
T Consensus 125 ~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~ 204 (2316)
T PRK09169 125 LAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDA 204 (2316)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcch
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhcCCCC-----------CcccHHHHHHHHHcCCChHHHHHHHHHHHH-------CCC
Q 002772 218 FIMNALMAMYAKLGRVDDAKTLFKSFEDR-----------DLVSWNTIVSSLSQNDKFLEAVMFLRQMAL-------RGI 279 (882)
Q Consensus 218 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~ 279 (882)
.-...++++++|.-+-..+...-..+-.+ +......+++++.|-.+-+.+...-..+-. ...
T Consensus 205 q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~ 284 (2316)
T PRK09169 205 QEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRL 284 (2316)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhh
Q ss_pred CCChhhHhhHHHHhccCCChh--------HHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---
Q 002772 280 KPDGVSIASVLPACSHLEMLD--------TGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK--- 348 (882)
Q Consensus 280 ~pd~~t~~~ll~a~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~--- 348 (882)
..|..-....|+++++..+-+ .|..+........ .-+..-....+++++|..+.+.+....+.+..+
T Consensus 285 ~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~--~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~ 362 (2316)
T PRK09169 285 ALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQ--AMNAQAVANALNALSKWPDEEACRAAAEALAARLAR 362 (2316)
T ss_pred hcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhh--hCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q ss_pred --------CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCC------CCcchHhhHHhHhhcCCCCcchhhHHHHHHH
Q 002772 349 --------KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLW------PNATTMSSVVPACVRSEAFPDKEGIHGHAIK 414 (882)
Q Consensus 349 --------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 414 (882)
+..-....+.++++-+.-+.+...-..+-....-. .|..-...++.+|++.+.-+...+....+..
T Consensus 363 ~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~ 442 (2316)
T PRK09169 363 DAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAA 442 (2316)
T ss_pred ChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q ss_pred -------hCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhc
Q 002772 415 -------LGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNR 487 (882)
Q Consensus 415 -------~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 487 (882)
..-..+..-....+.+++|.++.+.....-..+ |..+-.+-..
T Consensus 443 rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~L-----------------------A~rl~~~~~l------- 492 (2316)
T PRK09169 443 RLAADARLRNALSAQELANALNALSKWPDEAACRRAAEAL-----------------------AARLAGDAEL------- 492 (2316)
T ss_pred HHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHH-----------------------HHHHhcChhh-------
Q ss_pred cccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHH-------HHhcCCCchhHHHHHHHHHHhcCC----HH
Q 002772 488 NNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYA-------IRNMLATDVVVGSALVDMYAKCGC----LN 556 (882)
Q Consensus 488 ~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~-------~~~g~~~~~~~~~~li~~y~k~g~----~~ 556 (882)
...-+..-++.++.++++.+..+.+...-..+ -+.--..+..-....+.+++|-++ -.
T Consensus 493 -----------~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~ 561 (2316)
T PRK09169 493 -----------RQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRA 561 (2316)
T ss_pred -----------hhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHH
Q ss_pred HHHHHHhhCC-------CCChhhHHHHHHHHHccCCh----hHHHHHHHHHHHcCCCCCcccCC---hhHHHHHHHHHhc
Q 002772 557 FARRVFDLMP-------VRNVITWNVIIMAYGMHGEG----QEVLELLKNMVAEGSRGGEVKPN---EVTFIALFAACSH 622 (882)
Q Consensus 557 ~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~~~~~~pd---~~t~~~ll~a~~~ 622 (882)
.|..++..+. .-|...+.+.+.++.+-+.. +.+..+.....+.. ...+ ..-+.+.++++++
T Consensus 562 AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~-----~~~~afn~Q~lAN~LnALSK 636 (2316)
T PRK09169 562 AAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDA-----GLLDAFNAQDLANLLNGLSK 636 (2316)
T ss_pred HHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhcc-----ccccccCHHHHHHHHHHHhc
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC------ChhHHHHHHHHhhccCCHHHHHHHHHhCC----------CCCCchhhHHHHH
Q 002772 623 SGMVSEGMDLFYKMKDDYGIEP------SPDHYACVVDLLGRAGKVEDAYQLINMMP----------PEFDKAGAWSSLL 686 (882)
Q Consensus 623 ~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~l~r~g~~~eA~~~~~~m~----------~~p~~~~~~~~ll 686 (882)
-...+........+.....-.+ +..+...++++++|-.+.+.+.+....+. ..-+.. -..+.+
T Consensus 637 WP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq-~lAn~L 715 (2316)
T PRK09169 637 WPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQ-GVANAL 715 (2316)
T ss_pred CCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHH-HHHHHH
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCchHH-----HHHHHHHHcCCc
Q 002772 687 GACRIHQNVEIGEIAAQNLFLLEPDVASHYV-----LLSNIYSSAQLW 729 (882)
Q Consensus 687 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~-----~l~~~y~~~g~~ 729 (882)
+++.+--+.+..+.+.+.+..-=..++.... .|+|.+-..-+|
T Consensus 716 nAlsKwp~~~acr~A~~~LA~rL~~~~~l~~a~~aQ~lAnsLNaLsKw 763 (2316)
T PRK09169 716 NALSKWPEEEACRAAAEALAGRLAADADLRQAMNPQGLANSLNALSKW 763 (2316)
T ss_pred HHHHhccCccHHHHHHHHHHHHHhcChHHHhhcCHHHHHHHHHHHHhC
No 434
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.26 E-value=8e+02 Score=27.92 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=51.4
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHhh-ccCCHHHHHHHHHhC------CCCCCchhhHHHHHH
Q 002772 617 FAACSHSGMVSEGMDLFYKMKDDYGIEPS--PDHYACVVDLLG-RAGKVEDAYQLINMM------PPEFDKAGAWSSLLG 687 (882)
Q Consensus 617 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~l~-r~g~~~eA~~~~~~m------~~~p~~~~~~~~ll~ 687 (882)
+..+.+.|-+..|.++.+.+.+ +.|+ +...-.+||.|+ |+..++--+++++.. ..-|+-. .-.+|..
T Consensus 349 m~~l~~RGC~rTA~E~cKllls---Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~ 424 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLS---LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALAR 424 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhh---cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHH
Confidence 3455677888888888777764 4453 445555677764 666666656555543 2234433 2233333
Q ss_pred HHHhcCc---hhHHHHHHHHHhcCCC
Q 002772 688 ACRIHQN---VEIGEIAAQNLFLLEP 710 (882)
Q Consensus 688 a~~~~~~---~~~a~~~~~~~~~l~p 710 (882)
.+..... .+.|..++.+++.+.|
T Consensus 425 f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 425 FFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 3333332 3566666777776666
No 435
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.02 E-value=66 Score=33.00 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=31.5
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHh
Q 002772 250 SWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIA 287 (882)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 287 (882)
-||..|...++.|++++|+.++++..+.|+.--..||.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 47899999999999999999999999998765444443
No 436
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.01 E-value=66 Score=33.00 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=34.7
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHH
Q 002772 147 SWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVA 187 (882)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 187 (882)
-||..|..-.+.||+++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 48899999999999999999999999999876666664443
No 437
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.75 E-value=2.2e+02 Score=23.18 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=28.8
Q ss_pred cCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHH
Q 002772 331 NCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEA 369 (882)
Q Consensus 331 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 369 (882)
..|+.+.|+.+++.++ +....|...++++-..|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577888888888888 7777888888888777765444
No 438
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=31.63 E-value=26 Score=19.38 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=8.9
Q ss_pred cchhHhhhhhhc
Q 002772 843 NDCHQATKFISK 854 (882)
Q Consensus 843 ~~~h~~~~~~s~ 854 (882)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 457888888874
No 439
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.62 E-value=5.4e+02 Score=27.82 Aligned_cols=52 Identities=6% Similarity=-0.140 Sum_probs=29.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHhhc--cCCHHHHHHHHHhC
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEPSP----DHYACVVDLLGR--AGKVEDAYQLINMM 672 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~l~r--~g~~~eA~~~~~~m 672 (882)
+.+.+++..|.++|+++..+ .+.|+. ..|..+..+|.. .-++++|.+.++.+
T Consensus 140 l~n~~dy~aA~~~~~~L~~r-~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~ 197 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRR-LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDP 197 (380)
T ss_pred HHHhcChHHHHHHHHHHHhc-ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhc
Confidence 34556666666666666654 433332 234444455443 44567888888764
No 440
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.59 E-value=1.5e+02 Score=33.21 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChhHHHHHHhcCCCC-----CcccHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 002772 221 NALMAMYAKLGRVDDAKTLFKSFEDR-----DLVSWNTIVSSLSQNDKFLEAVMFLRQMALR 277 (882)
Q Consensus 221 ~~Li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 277 (882)
..|+.-|.+++++++|..++..|.=. -..+.+.+.+.+.+..--.+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 46788899999999999999888621 1223445556666665555555556655544
No 441
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.25 E-value=2.4e+02 Score=22.99 Aligned_cols=65 Identities=12% Similarity=0.176 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHH
Q 002772 97 KQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLAL 165 (882)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 165 (882)
.++++...+.|+. +....+.+-.+-...| +.+.|+++++.++ +....|..+++++-..|...-|.
T Consensus 22 ~~v~d~ll~~~il--T~~d~e~I~aa~~~~g-~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL--TEEDRNRIEAATENHG-NESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC--CHHHHHHHHHhccccC-cHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4556666666643 2222233333223446 8888888888888 77778888888888877755443
No 442
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.41 E-value=1.1e+03 Score=29.55 Aligned_cols=19 Identities=21% Similarity=0.036 Sum_probs=12.4
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q 002772 547 DMYAKCGCLNFARRVFDLM 565 (882)
Q Consensus 547 ~~y~k~g~~~~A~~~~~~m 565 (882)
.+|..+|...+|.+.|.+.
T Consensus 928 ~~yl~tge~~kAl~cF~~a 946 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSA 946 (1480)
T ss_pred eeeecCCchHHHHHHHHHH
Confidence 3466677777777776654
No 443
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=29.85 E-value=6.8e+02 Score=26.34 Aligned_cols=129 Identities=16% Similarity=0.076 Sum_probs=81.8
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhc------cCCHHHHHHHHHHhHHhc
Q 002772 567 VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSH------SGMVSEGMDLFYKMKDDY 640 (882)
Q Consensus 567 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~------~g~~~~a~~~~~~m~~~~ 640 (882)
+.|-.-|+- +-.++++.++++....+ .|........|.+|-- .-++..-..+|+.+..
T Consensus 261 dQDr~lW~r--------~lI~eg~all~rA~~~~------~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~-- 324 (415)
T COG4941 261 DQDRSLWDR--------ALIDEGLALLDRALASR------RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ-- 324 (415)
T ss_pred ccchhhhhH--------HHHHHHHHHHHHHHHcC------CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--
Confidence 445566653 23578888888888887 5887777777766521 2346666677776654
Q ss_pred CCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCC----CCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 002772 641 GIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPE----FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA 713 (882)
Q Consensus 641 ~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~----p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 713 (882)
+.|++.+--.=.-+++...-.+.++..++....+ .-.. .|..-...+.+.|..++|...|++++++.++..
T Consensus 325 -~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~-~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 325 -AAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHL-YHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred -hCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccc-cHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 3455432211122233333345556666655333 2223 677778889999999999999999999988643
No 444
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.22 E-value=1.1e+03 Score=28.48 Aligned_cols=417 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCC
Q 002772 153 ATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGR 232 (882)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~ 232 (882)
..|...|++++|++.-+.- +....+++...+.. |...++
T Consensus 366 k~yLd~g~y~kAL~~ar~~--------p~~le~Vl~~qAdf---------------------------------~f~~k~ 404 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR--------PDALETVLLKQADF---------------------------------LFQDKE 404 (911)
T ss_pred HHHHhcchHHHHHHhccCC--------HHHHHHHHHHHHHH---------------------------------HHhhhH
Q ss_pred hhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHH------hccCCChh------
Q 002772 233 VDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPA------CSHLEMLD------ 300 (882)
Q Consensus 233 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a------~~~~~~~~------ 300 (882)
+..|-+++-++ ..++..+.--+....+.+ ++..|-.=+-..++|...+-..+|.. +.+.++++
T Consensus 405 y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~ 479 (911)
T KOG2034|consen 405 YLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEA 479 (911)
T ss_pred HHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhH
Q ss_pred ------HHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHH
Q 002772 301 ------TGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFI 374 (882)
Q Consensus 301 ------~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 374 (882)
.-.++-..+.+.-....+...+.+........|+.+....+-.-|.+ |..++.-+.+.+.+++|++++.
T Consensus 480 ~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~ 554 (911)
T KOG2034|consen 480 LENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLL 554 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHcCCC-------------------------CCcchHhhHHhHhhcC---CCCcchhhHHHHHHHhCCCCchHHHHH
Q 002772 375 KMEEVAGLW-------------------------PNATTMSSVVPACVRS---EAFPDKEGIHGHAIKLGLGRDRYVQNA 426 (882)
Q Consensus 375 ~m~~~~g~~-------------------------p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~ 426 (882)
.- +..... .+..-...++.-+.+. .....+.......+..--..+....|.
T Consensus 555 ~~-~~~el~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ 633 (911)
T KOG2034|consen 555 NQ-RNPELFYKYAPELITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNS 633 (911)
T ss_pred hc-cchhhHHHhhhHHHhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHH
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCeeeH--HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCc
Q 002772 427 LMDMYSRMGRIEISKTIFDDMEVRDTVSW--NTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNS 504 (882)
Q Consensus 427 Li~~y~~~g~~~~A~~~~~~m~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~ 504 (882)
++..|++..+-+.-..+-..+..++.+.| .--+..|.+.+....+..++..|..
T Consensus 634 ll~lya~~~~~~ll~~le~~~~~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l------------------------ 689 (911)
T KOG2034|consen 634 LLHLYAKHERDDLLLYLEIIKFMKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNL------------------------ 689 (911)
T ss_pred HHHHhhcCCccchHHHHHHHhhccccceecHHHHHHHHHHhCccceeeeHHHHHHH------------------------
Q ss_pred chHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccC
Q 002772 505 ITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHG 584 (882)
Q Consensus 505 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 584 (882)
|...+..-.... ++.|+.+-........---..-.+.-=.+..+..++..|.+.+..-.--.+.-.--..--|.+.+
T Consensus 690 --~~~aVdlAL~~d-~dlak~~A~~~ee~e~lrKkLWLkIAkh~v~~~~~ikk~i~~Lk~~~lLkiedlLpffpdf~~id 766 (911)
T KOG2034|consen 690 --FEDAVDLALQFD-IDLAKVIANDPEEDEDLRKKLWLKIAKHVVKQENDIKKAIRFLKENELLTIEDLLPFFPDFTKID 766 (911)
T ss_pred --HHHHHHHHhhcC-HHHHhhhhcChhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHhccCcccchhhhhccccchhhhh
Q ss_pred ChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhc
Q 002772 585 EGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGR 658 (882)
Q Consensus 585 ~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r 658 (882)
++++|+.-+-+--... ...+-.-+..++..+..+....+-+..--. -++|+.....|..-.+.+
T Consensus 767 ~~keaic~~L~~~n~r--------ieel~~em~eat~~a~~I~~~~~~l~~ry~--v~ep~d~C~~C~~~ll~~ 830 (911)
T KOG2034|consen 767 NLKEAICDFLEDYNKR--------IEELQEEMIEATELADEIRTEISKLRQRYR--VLEPQDSCDHCGRPLLIK 830 (911)
T ss_pred hhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHHHhhcceE--EecCccchHHhcchhhcC
No 445
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=29.10 E-value=1.1e+03 Score=28.49 Aligned_cols=255 Identities=13% Similarity=0.049 Sum_probs=135.2
Q ss_pred HhcCChHHHHHHHhhCC----CCCee-------eHHHHHH-HHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccC
Q 002772 432 SRMGRIEISKTIFDDME----VRDTV-------SWNTMIT-GYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLR 499 (882)
Q Consensus 432 ~~~g~~~~A~~~~~~m~----~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 499 (882)
....++++|..+..+.. .++.. .|+++-. .....|++++|.++.+....+-.. .-
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~-------------~~ 492 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE-------------AA 492 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc-------------cc
Confidence 34667777777766543 33222 4565543 334568899999999988761100 01
Q ss_pred CCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHH-----HHHHHhcCC--HHHHHHHHhhCC-----C
Q 002772 500 PKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSAL-----VDMYAKCGC--LNFARRVFDLMP-----V 567 (882)
Q Consensus 500 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l-----i~~y~k~g~--~~~A~~~~~~m~-----~ 567 (882)
..+..+.+..+..+..-.|++++|..+.+...+..-..+...+... ...+...|. .++....|.... +
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 2233444555666777789999999998888776444444444332 234556673 333334444332 1
Q ss_pred CC-----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh--HH--HHHHHHHhccCCHHHHHHHHHHhHH
Q 002772 568 RN-----VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV--TF--IALFAACSHSGMVSEGMDLFYKMKD 638 (882)
Q Consensus 568 ~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~--t~--~~ll~a~~~~g~~~~a~~~~~~m~~ 638 (882)
.. +-....+..++.+ .+.+..-...-.+.|.. ..|... .. ..|.....-.|+.++|...++++..
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~---~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSV---YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred cccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhh---cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11 2333344444444 33333322222222200 223322 22 2556667788999999999999887
Q ss_pred hcCCCCC----hhHHHHHHH--HhhccCCHHHHHHHHHhCC------CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 002772 639 DYGIEPS----PDHYACVVD--LLGRAGKVEDAYQLINMMP------PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLF 706 (882)
Q Consensus 639 ~~~~~p~----~~~~~~li~--~l~r~g~~~eA~~~~~~m~------~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 706 (882)
- ...+. -..-.+.+. .....|+.++|.....+-. ...... .|......-...|-...++.+...+.
T Consensus 647 l-~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~-~~r~i~~~~~~Lg~~~eae~al~~l~ 724 (894)
T COG2909 647 L-LLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGDPDKANAHFPQL-QWRLIAREQILLGILLEAELALDELA 724 (894)
T ss_pred H-hcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccCchhhhhhcccc-cccccchHHHHHhhhhHHHHHHHHHh
Confidence 5 33332 112222333 3346788888877766521 111111 45544444455555566666666555
Q ss_pred c
Q 002772 707 L 707 (882)
Q Consensus 707 ~ 707 (882)
+
T Consensus 725 ~ 725 (894)
T COG2909 725 S 725 (894)
T ss_pred h
Confidence 5
No 446
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=28.84 E-value=5.9e+02 Score=25.30 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=57.4
Q ss_pred hcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC----------------CCCChhhHHHHH
Q 002772 514 CGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLM----------------PVRNVITWNVII 577 (882)
Q Consensus 514 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m----------------~~~~~~~~~~li 577 (882)
|.++.+..--.++..-....++..+..-..+++ +...|++..|...++.- ..|.......|+
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 334444433344444444444444433333333 45677777777665543 256666666677
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHH
Q 002772 578 MAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAAC 620 (882)
Q Consensus 578 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~ 620 (882)
..+. .+++++|.+.+.++.+.| ..|... .+++...+
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lg-----ysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLG-----YSPEDI-ITTLFRVV 282 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcC-----CCHHHH-HHHHHHHH
Confidence 6655 468999999999999999 777543 23444444
No 447
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.62 E-value=1.5e+02 Score=26.94 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHH
Q 002772 63 LSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTL 119 (882)
Q Consensus 63 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 119 (882)
.+.+.+.+.|.++++.-. .+++.+...++.-.|..+|+.+.+.++...-+.+|++|
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L 62 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTL 62 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHH
No 448
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.61 E-value=3.4e+02 Score=31.01 Aligned_cols=85 Identities=9% Similarity=0.046 Sum_probs=56.2
Q ss_pred ccCCHHHHHHHHHh-CCCCCCc------hhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCch
Q 002772 658 RAGKVEDAYQLINM-MPPEFDK------AGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWD 730 (882)
Q Consensus 658 r~g~~~eA~~~~~~-m~~~p~~------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 730 (882)
+..++..+.++++. |..-|.+ ....++|.-.|....++|.|.++++.+-+.+|.++-.-..+..+....|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 44566666666552 3211111 1144555556666678888888888888888888777777788888888888
Q ss_pred HHHHHHHHHHhC
Q 002772 731 KAMDVRKKMKEM 742 (882)
Q Consensus 731 ~a~~~~~~m~~~ 742 (882)
+|+.+....+..
T Consensus 446 ~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 446 EALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHhh
Confidence 888777766544
No 449
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=28.03 E-value=4.7e+02 Score=25.99 Aligned_cols=135 Identities=16% Similarity=0.125 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh--HHHHHHH
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV--TFIALFA 618 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~--t~~~ll~ 618 (882)
-|...|+.|...|.- .+|.+..+.||- ....|+++.|+++.+-+++.|. .-|+.+ ++-+++
T Consensus 66 ~Y~p~V~g~L~~g~~-----------~qd~Vl~~~mvW-~~D~Gd~~~AL~ia~yAI~~~l----~~Pd~f~R~~~t~v- 128 (230)
T PHA02537 66 KYLPWVEGVLAAGAG-----------YQDDVLMTVMVW-RFDIGDFDGALEIAEYALEHGL----TMPDQFRRTLANFV- 128 (230)
T ss_pred chHHHHHHHHHcCCC-----------CCCCeeeEeeee-eeeccCHHHHHHHHHHHHHcCC----CCCccccCCchHHH-
Confidence 355556666655531 233333333332 2356999999999999999983 345432 222222
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHH--------
Q 002772 619 ACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACR-------- 690 (882)
Q Consensus 619 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~-------- 690 (882)
.++....-....+. |-..++.....+.++-... .|+.+.... .+..++..+.
T Consensus 129 -------aeev~~~A~~~~~a-g~~~e~~~~~~~~~l~~~~-----------dmpd~vrAK-l~K~~G~~llr~~~g~~~ 188 (230)
T PHA02537 129 -------AEEVANAALKAASA-GESVEPYFLRVFLDLTTEW-----------DMPDEVRAK-LYKAAGYLLLRNEKGEPI 188 (230)
T ss_pred -------HHHHHHHHHHHHHc-CCCCChHHHHHHHHHHhcC-----------CCChHHHHH-HHHHHHHHHhhcccCCCc
Confidence 12222222222222 4333333333222221111 233222222 4444444442
Q ss_pred -hcCchhHHHHHHHHHhcCCCCC
Q 002772 691 -IHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 691 -~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
..++.+.|...++++++++|+.
T Consensus 189 ~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 189 GDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred cCcccHHHHHHHHHHHHHhCCCC
Confidence 3356778999999999999863
No 450
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=27.28 E-value=4.2e+02 Score=26.51 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhc-----CCCCCCchHHHHHH----HHHHcCCchHHHHHHHHHHhCCC
Q 002772 695 VEIGEIAAQNLFL-----LEPDVASHYVLLSN----IYSSAQLWDKAMDVRKKMKEMGV 744 (882)
Q Consensus 695 ~~~a~~~~~~~~~-----l~p~~~~~~~~l~~----~y~~~g~~~~a~~~~~~m~~~g~ 744 (882)
.+.|..+|+.+++ +.|.+|...-+..| .|--.|+.++|.++-+..-+..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4677778877775 56777755443333 34558999999998877655443
No 451
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=26.76 E-value=6.2e+02 Score=24.85 Aligned_cols=63 Identities=19% Similarity=0.125 Sum_probs=41.2
Q ss_pred CCc-hHHHHHHHHHHHhcCChHHHHHHHhhCCCCCee-eHHHHHHH--HHhcCCHHHHHHHHHHHhh
Q 002772 418 GRD-RYVQNALMDMYSRMGRIEISKTIFDDMEVRDTV-SWNTMITG--YTICGQHGDALMLLREMQN 480 (882)
Q Consensus 418 ~~~-~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~m~~ 480 (882)
.|+ +.+||-|.--+...|+++.|.+.|+...+-|+. -|..+=.| +--.|++.-|.+-|.+.-+
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 444 467888888888899999999999888755432 23222222 2235777878777776654
No 452
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=26.50 E-value=6.9e+02 Score=25.36 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH
Q 002772 251 WNTIVSSLSQNDKFLEAVMFLRQMAL 276 (882)
Q Consensus 251 ~~~li~~~~~~g~~~~A~~l~~~m~~ 276 (882)
.+.+|..+.+.+...+|+++.+.+..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 45566666666666666666655543
No 453
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=25.90 E-value=5.1e+02 Score=25.04 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcC--CC---CCCchHHHHHHHH
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLL--EP---DVASHYVLLSNIY 723 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l--~p---~~~~~~~~l~~~y 723 (882)
.|..|..........+.++++.+++-|+ .| +++..|...+-++
T Consensus 141 LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~ 188 (199)
T PF04090_consen 141 LWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIRGMCH 188 (199)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 4444444443333445566666666653 33 4555555544443
No 454
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=25.85 E-value=24 Score=26.65 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=16.7
Q ss_pred eeEEEecCCccccccCccccC
Q 002772 858 REIILRDVRRFHHFKNGTCSC 878 (882)
Q Consensus 858 ~~~~~~d~~~~h~~~~g~csc 878 (882)
..|=+.|..-.|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 457789999999999998654
No 455
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=25.34 E-value=7.5e+02 Score=25.36 Aligned_cols=117 Identities=10% Similarity=0.050 Sum_probs=70.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhC-----CCCCCCcc--------HHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHH
Q 002772 50 RSEARSNQFREAILSYIEMTRS-----DIQPDNFA--------FPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVA 116 (882)
Q Consensus 50 ~~~~~~~~~~~a~~~~~~m~~~-----g~~p~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 116 (882)
..+.-+.+|..|++.-++-.+. +...+..+ ...=|.+++..+++.++....-+-....-. -.+.+.
T Consensus 43 d~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk-lPpkIl 121 (309)
T PF07163_consen 43 DLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK-LPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc-CCHHHH
Confidence 3455678888888877764432 11111111 222367788888886665543332221111 335556
Q ss_pred hHHHHHHHhcCCCHHHHHHHHhc-cC---CCCceeHHHHHHHHHh-----cCCchHHHHHH
Q 002772 117 NTLVNMYGKCGSDMWDVYKVFDR-IT---EKDQVSWNSMIATLCR-----FGKWDLALEAF 168 (882)
Q Consensus 117 ~~li~~y~~~g~~~~~A~~~f~~-~~---~~~~~~~~~li~~~~~-----~g~~~~A~~~~ 168 (882)
..=|-.|.|.+ .+..+.++-.. +. +.+..-|.+++.-|.. .|.+++|.++.
T Consensus 122 eLCILLysKv~-Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 122 ELCILLYSKVQ-EPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 66678899999 87777666543 22 3355568877766654 69999998877
No 456
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.33 E-value=2.8e+02 Score=28.95 Aligned_cols=90 Identities=10% Similarity=0.019 Sum_probs=64.2
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhC-CCCCCch----hhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHH
Q 002772 648 HYACVVDLLGRAGKVEDAYQLINMM-PPEFDKA----GAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNI 722 (882)
Q Consensus 648 ~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 722 (882)
+|--=.+-|-+..++..|.+.+.+- ..+..+. ..|.+-..+-...||+..+..-..+++.++|.+...|.-=+..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3333456677888999999888654 2222222 1344444555667899999999999999999999999988888
Q ss_pred HHHcCCchHHHHHHH
Q 002772 723 YSSAQLWDKAMDVRK 737 (882)
Q Consensus 723 y~~~g~~~~a~~~~~ 737 (882)
+....++++|..+-+
T Consensus 163 ~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 163 LLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888777665444
No 457
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=24.88 E-value=1.8e+02 Score=29.46 Aligned_cols=57 Identities=18% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 683 SSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 683 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
..+=+++...++.+.|..+.++++.++|+++.-.---+-+|++.|-..-|..-++..
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence 344456777888899999999999999998877777888899998888888766643
No 458
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=24.82 E-value=1.8e+02 Score=24.04 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 716 YVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 716 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
...++.++...|++++|...+++..+
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888999999999988876543
No 459
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.07 E-value=1.1e+03 Score=27.04 Aligned_cols=84 Identities=7% Similarity=-0.047 Sum_probs=38.5
Q ss_pred HHcCCChHHHHHHHHHHHH-------CCCCCChhhHhhHHHHhccCC-----ChhHHHHHHHHHHHhCCCCCchhHHHHH
Q 002772 258 LSQNDKFLEAVMFLRQMAL-------RGIKPDGVSIASVLPACSHLE-----MLDTGKEIHAYALRNDILIDNSFVGSAL 325 (882)
Q Consensus 258 ~~~~g~~~~A~~l~~~m~~-------~g~~pd~~t~~~ll~a~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~~L 325 (882)
+....+.+.|+..|+.+.+ .| +.....-+-.+|.+.. +.+.|..++....+.| .++....-..
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~ 333 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGV 333 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHH
Confidence 3345566666666666654 33 2223333334443321 4455666666666665 2332222222
Q ss_pred HHHhhc-CCChHHHHHHHhccC
Q 002772 326 VDMYCN-CREVECGRRVFDFIS 346 (882)
Q Consensus 326 i~~y~~-~g~~~~A~~~f~~m~ 346 (882)
+-.... ..+...|..+|..-.
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHH
Confidence 222222 234556666655543
No 460
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.90 E-value=3e+02 Score=28.02 Aligned_cols=27 Identities=11% Similarity=-0.074 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
+|..+...|.+.+|.+.|.+...+.++
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 566666666666666666666555544
No 461
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=23.73 E-value=3.2e+02 Score=30.38 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=58.7
Q ss_pred hhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC--------CCchHH
Q 002772 646 PDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD--------VASHYV 717 (882)
Q Consensus 646 ~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--------~~~~~~ 717 (882)
+..|-..+.-|+..+++++|.++.+... ... .|.+|...-..+.+...++.+|-.+.+.+.- -+.--.
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqT-MWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQT-MWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chH-HHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 3346666667778888888888887654 233 8999988888888888888888777776421 111122
Q ss_pred HHHHHHHHcCCchHHHHHHH
Q 002772 718 LLSNIYSSAQLWDKAMDVRK 737 (882)
Q Consensus 718 ~l~~~y~~~g~~~~a~~~~~ 737 (882)
.++....-.|+..||.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 34444555677777766554
No 462
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=23.69 E-value=8.9e+02 Score=25.65 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHH-HHHHHHHHHCCCCCChhhHhhHHHHhccCCC
Q 002772 220 MNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEA-VMFLRQMALRGIKPDGVSIASVLPACSHLEM 298 (882)
Q Consensus 220 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A-~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 298 (882)
.-.+.+.++|.++.+.+..+-+.++.-......++..++=...-.++. ..+++..... ||..+...++++.+....
T Consensus 169 LQGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~ 245 (340)
T PF12069_consen 169 LQGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPA 245 (340)
T ss_pred hhHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCc
Confidence 344566777777776666666555543333344455444333333333 3344444443 899999999999998877
Q ss_pred hhHHHHHHHHHHHhC
Q 002772 299 LDTGKEIHAYALRND 313 (882)
Q Consensus 299 ~~~a~~~~~~~~~~g 313 (882)
.......+..++...
T Consensus 246 ~~~~~~~i~~~L~~~ 260 (340)
T PF12069_consen 246 SDLVAILIDALLQSP 260 (340)
T ss_pred hhHHHHHHHHHhcCc
Confidence 777777666666654
No 463
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=23.44 E-value=9.9e+02 Score=27.93 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=32.4
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHhccCCC--CceeHHHHHHHHHhcCCchHHHHHHHHHH
Q 002772 115 VANTLVNMYGKCGSDMWDVYKVFDRITEK--DQVSWNSMIATLCRFGKWDLALEAFRMML 172 (882)
Q Consensus 115 ~~~~li~~y~~~g~~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 172 (882)
.+..|+.+.... +.++-..++.++... ....|+.++.++...|-.....-+.+.+.
T Consensus 348 ~f~~Lv~~lr~l--~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~ 405 (618)
T PF01347_consen 348 KFSRLVRLLRTL--SYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIK 405 (618)
T ss_dssp HHHHHHHHHTTS---HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666665554 466677777666654 55667777777777776544443333333
No 464
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=23.36 E-value=2.1e+02 Score=27.43 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=27.8
Q ss_pred ccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 002772 606 VKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDD 639 (882)
Q Consensus 606 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 639 (882)
..|+...|..++.++...|+.++|.+...++..-
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5688888888888888888888888888888754
No 465
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=22.44 E-value=7.1e+02 Score=27.02 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=23.9
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCcccCChh--HHHHHHHHH--hccCCHHHHHHHHHHhHH
Q 002772 582 MHGEGQEVLELLKNMVAEGSRGGEVKPNEV--TFIALFAAC--SHSGMVSEGMDLFYKMKD 638 (882)
Q Consensus 582 ~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~--t~~~ll~a~--~~~g~~~~a~~~~~~m~~ 638 (882)
..+++..|.++|+++... ++++.. .+..+..+| -..-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r------l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR------LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh------CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445566666666666553 122222 222333333 234455566666655544
No 466
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=22.43 E-value=26 Score=25.44 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=9.0
Q ss_pred ccccCcchhHhh
Q 002772 838 NLRVCNDCHQAT 849 (882)
Q Consensus 838 n~~~c~~~h~~~ 849 (882)
-.-+|+|||.--
T Consensus 19 miYiCgdC~~en 30 (62)
T KOG3507|consen 19 MIYICGDCGQEN 30 (62)
T ss_pred EEEEeccccccc
Confidence 356899999643
No 467
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=22.36 E-value=5.4e+02 Score=22.66 Aligned_cols=44 Identities=9% Similarity=0.205 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHH
Q 002772 587 QEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYK 635 (882)
Q Consensus 587 ~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~ 635 (882)
+.+.++|+.|...| +--. ..-|......+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~-----IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKG-----IGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHT-----TSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcC-----ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 38889999999888 5444 34566666777888888888888865
No 468
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.15 E-value=7.2e+02 Score=23.99 Aligned_cols=89 Identities=10% Similarity=0.002 Sum_probs=52.0
Q ss_pred HhhcCcchHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh--HHHHHHHHHccCChh
Q 002772 512 PGCGALSALAKGKEIHAYAIRNMLAT--DVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVIT--WNVIIMAYGMHGEGQ 587 (882)
Q Consensus 512 ~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~ 587 (882)
......+++++|...+......--.. ...+--.|.......|.+++|...++....++-.+ -..-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 34566677777777776655322111 11222234556667777788877777766543322 122234577777777
Q ss_pred HHHHHHHHHHHcC
Q 002772 588 EVLELLKNMVAEG 600 (882)
Q Consensus 588 ~A~~l~~~m~~~g 600 (882)
+|..-|++.++.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 8887777777754
No 469
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=21.93 E-value=7.1e+02 Score=23.88 Aligned_cols=159 Identities=9% Similarity=0.035 Sum_probs=0.0
Q ss_pred HcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHh--------CCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC--
Q 002772 379 VAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKL--------GLGRDRYVQNALMDMYSRMGRIEISKTIFDDME-- 448 (882)
Q Consensus 379 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~-- 448 (882)
..|..+|...++.++..+.+..-...-....-.+... +...|......=+..|-+.|++.+--.+|-...
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred -----------------------CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcc
Q 002772 449 -----------------------VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSI 505 (882)
Q Consensus 449 -----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~ 505 (882)
++..+.|.....+-++.-+.+++-+.|--=..
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiG------------------------- 135 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIG------------------------- 135 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHH-------------------------
Q ss_pred hHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchh--------------HHHHHHHHHHhcCCHHHHHHHHhh
Q 002772 506 TLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVV--------------VGSALVDMYAKCGCLNFARRVFDL 564 (882)
Q Consensus 506 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~--------------~~~~li~~y~k~g~~~~A~~~~~~ 564 (882)
.+++..|.+.-++.+++.+++.+-+..+..+.- +.|.-...+.++|.++.|..++++
T Consensus 136 --iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 --ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 470
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=21.62 E-value=9.3e+02 Score=25.08 Aligned_cols=101 Identities=18% Similarity=0.075 Sum_probs=63.8
Q ss_pred ccCCHHHHHHHHHHhHHhcC---CCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHH
Q 002772 622 HSGMVSEGMDLFYKMKDDYG---IEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIG 698 (882)
Q Consensus 622 ~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a 698 (882)
..+-.++|.+.|+....... ...++.....+.....+.|..++-..+++.....++.. .-..++.+.....+.+.-
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~-~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPE-EKRRLLSALACSPDPELL 220 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHH-HHHHHHHHHTT-S-HHHH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHH-HHHHHHHhhhccCCHHHH
Confidence 33447888999999887311 14466777778888888888776555655554444444 778889998889999999
Q ss_pred HHHHHHHhcCC-CCCCchHHHHHHHH
Q 002772 699 EIAAQNLFLLE-PDVASHYVLLSNIY 723 (882)
Q Consensus 699 ~~~~~~~~~l~-p~~~~~~~~l~~~y 723 (882)
.++++.++.-+ -.....+..+..++
T Consensus 221 ~~~l~~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 221 KRLLDLLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp HHHHHHHHCTSTS-TTTHHHHHHHHH
T ss_pred HHHHHHHcCCcccccHHHHHHHHHHh
Confidence 99999999842 22233444554443
No 471
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=21.30 E-value=2.4e+02 Score=22.83 Aligned_cols=41 Identities=7% Similarity=0.090 Sum_probs=30.8
Q ss_pred hhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHH
Q 002772 329 YCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEA 369 (882)
Q Consensus 329 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 369 (882)
.+...+.+.|.++++.++.++..+|.+...++-..|...-|
T Consensus 40 ~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 40 QAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34456678888888888888888888888888777755433
No 472
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=20.74 E-value=3.7e+02 Score=29.28 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-----------CCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMP-----------VRNVITWNVIIMAYGMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 598 (882)
....|+...+-.|++..|.++++.+. .-.+.++--+.-+|...+++.+|++.|...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788888999999999988775 12455666777888999999999999988654
No 473
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=20.42 E-value=4.7e+02 Score=23.07 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=11.9
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhC
Q 002772 649 YACVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 649 ~~~li~~l~r~g~~~eA~~~~~~m 672 (882)
-.++.-++.=.|..++|.++++..
T Consensus 69 vEAlAAaLyI~G~~~~A~~lL~~F 92 (127)
T PF04034_consen 69 VEALAAALYILGFKEQAEELLSKF 92 (127)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcC
Confidence 334444444455555555555544
No 474
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=20.42 E-value=4.1e+02 Score=23.43 Aligned_cols=58 Identities=17% Similarity=0.073 Sum_probs=39.2
Q ss_pred HHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHH
Q 002772 267 AVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALV 326 (882)
Q Consensus 267 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li 326 (882)
..+-+..+..-.+.|+....-..|+||.+.+|+..|..+++.+... ..+...+|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 3344455555678888888888888888888888888888776543 233333555443
No 475
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=20.31 E-value=1.5e+02 Score=29.05 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=48.1
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 690 RIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 690 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
...+|.+-+-+++.+++++-|+....|.-++..-.++|+.+.|.+.+++..+..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 355788889999999999999999999999999999999999999988876644
No 476
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.14 E-value=2.2e+02 Score=31.16 Aligned_cols=124 Identities=10% Similarity=0.059 Sum_probs=72.2
Q ss_pred CcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------------ChhhHHHHHHHH--
Q 002772 516 ALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVR-------------NVITWNVIIMAY-- 580 (882)
Q Consensus 516 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~-------------~~~~~~~li~~~-- 580 (882)
..+.+++-.++++.+.+.|- ..+...-|+.|.+.+++++|...+++-.+. .+.....++.+.
T Consensus 66 G~~~~~e~i~lL~~l~~~g~---ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~ 142 (480)
T TIGR01503 66 GVALLDEHIELLRTLQEEGG---ADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNL 142 (480)
T ss_pred CCCcHHHHHHHHHHHHHccC---CCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCC
Confidence 34567788888888888762 224455689999999999999999865421 223333444443
Q ss_pred ---HccCChhHHHHHHHHHHHcCCCCCcccCC---hhHHHHHHHHHhccCCHHHHHHHHHHhH---Hh---cCCCCChhH
Q 002772 581 ---GMHGEGQEVLELLKNMVAEGSRGGEVKPN---EVTFIALFAACSHSGMVSEGMDLFYKMK---DD---YGIEPSPDH 648 (882)
Q Consensus 581 ---~~~g~~~~A~~l~~~m~~~g~~~~~~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~---~~~~p~~~~ 648 (882)
.+||-. .+..+++-+...| +.-. .++|+. -|++.=-+++++..|+.+- .. .|+..+.+.
T Consensus 143 PvQvRHGtp-DarlL~e~~~a~G-----~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~ 213 (480)
T TIGR01503 143 PLQIRHGTP-DARLLAEIILAGG-----FTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREP 213 (480)
T ss_pred CeeccCCCC-cHHHHHHHHHHcC-----CCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccc
Confidence 345544 4777888888877 3322 233321 2344444555555554322 11 255555555
Q ss_pred HHH
Q 002772 649 YAC 651 (882)
Q Consensus 649 ~~~ 651 (882)
+.+
T Consensus 214 FGp 216 (480)
T TIGR01503 214 FGP 216 (480)
T ss_pred ccC
Confidence 444
No 477
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=20.14 E-value=1.7e+02 Score=32.12 Aligned_cols=101 Identities=11% Similarity=0.072 Sum_probs=64.1
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHh
Q 002772 579 AYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIAL-FAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLL 656 (882)
Q Consensus 579 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l 656 (882)
.+...+.++.|+.++.+.++ ..||.+.|-.. ..++.+.+++..|+.=+..+.+. .|+ ...|--=..++
T Consensus 13 ~~l~~~~fd~avdlysKaI~-------ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE-------LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAV 82 (476)
T ss_pred hhcccchHHHHHHHHHHHHh-------cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHH
Confidence 34556789999999999998 55876554443 36788888888888877777653 343 22222222333
Q ss_pred hccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHH
Q 002772 657 GRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACR 690 (882)
Q Consensus 657 ~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~ 690 (882)
.+.+++.+|+..++.. ...|+.+ -....+.-|-
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~-~~~r~~~Ec~ 116 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDP-DATRKIDECN 116 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcH-HHHHHHHHHH
Confidence 4456677777766654 4567777 5555555553
Done!