Query 002772
Match_columns 882
No_of_seqs 733 out of 5231
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 17:42:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002772.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1487-1491//hhsearch_pdb/002772hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 342.5 30.9 499 123-743 63-580 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 331.4 36.9 479 111-725 82-596 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 216.6 19.3 195 147-433 28-222 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 211.3 15.2 191 250-516 28-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 202.4 35.0 311 352-728 69-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 195.6 35.7 352 358-742 7-368 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 187.9 29.5 224 509-743 242-479 (514)
8 2y4t_A DNAJ homolog subfamily 1.0 1 1 186.6 25.5 178 538-725 176-375 (450)
9 3fp2_A TPR repeat-containing p 1.0 1 1 176.6 31.2 217 517-743 256-492 (537)
10 2gw1_A Mitochondrial precursor 1.0 1 1 176.4 28.3 178 538-721 303-491 (514)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=342.49 Aligned_cols=499 Identities=11% Similarity=-0.010 Sum_probs=325.0
Q ss_pred HHHCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 77169997899999831699991209999999995699018999999978789999920199999984069854313889
Q 002772 123 YGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLG 202 (882)
Q Consensus 123 y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~ 202 (882)
+.++| .+..+...|+.++.+++..|+.++..+.+.|++++|+.+|+.|.. ..|+..++
T Consensus 63 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~------------------- 120 (597)
T 2xpi_A 63 TSTDG-SFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDA------------------- 120 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHH-------------------
T ss_pred CCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHH-------------------
T ss_conf 65567-667887754663378999999999999874583479999999996--08993579-------------------
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 898874624299706699999998780599168999971189--999341999999997199937999999999877999
Q 002772 203 RQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFE--DRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIK 280 (882)
Q Consensus 203 ~~~~~~~~~~g~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 280 (882)
..++..|.+.|++++|..+|+.+. .++..+|+.++..|.+.|++++|..+|+++.
T Consensus 121 ------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----- 177 (597)
T 2xpi_A 121 ------------------FWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN----- 177 (597)
T ss_dssp ------------------HHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----
T ss_pred ------------------HHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_conf ------------------999999997476999999999873354565089999999998866999999984248-----
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEHHHHHHHH
Q ss_conf 99301865988850689906899999999981898882548999999755189927899997216999910069999987
Q 002772 281 PDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGY 360 (882)
Q Consensus 281 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~ 360 (882)
|+.. ...++...+.. ..+ .+. ++.+|+.++.+|
T Consensus 178 ~~~~----~~~~~~~~~~~-----------~~~-~~~-------------------------------~~~~~~~l~~~~ 210 (597)
T 2xpi_A 178 PFRK----DEKNANKLLMQ-----------DGG-IKL-------------------------------EASMCYLRGQVY 210 (597)
T ss_dssp TTC--------------CC-----------CSS-CCH-------------------------------HHHHHHHHHHHH
T ss_pred CCCC----CCCCCCCCCCC-----------CCC-CCH-------------------------------HHHHHHHHHHHH
T ss_conf 8632----23234334321-----------123-512-------------------------------589999988999
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHCCCCCC--CHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 219994899999999989729889901396-4886730179975--03568-9999892898755789899999872499
Q 002772 361 GQNEYDEEALMLFIKMEEVAGLWPNATTMS-SVVPACVRSEAFP--DKEGI-HGHAIKLGLGRDRYVQNALMDMYSRMGR 436 (882)
Q Consensus 361 ~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~-~ll~~~~~~~~~~--~a~~~-~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 436 (882)
.+.|++++|+.+|++|.. ..|+..... .+...+...+..+ ....+ +..+...+......+++.++..|.+.|+
T Consensus 211 ~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 287 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALM---VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287 (597)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH
T ss_pred HHCCCHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCH
T ss_conf 983998999999999997---29325699999998503461567899986577423443088999999999999807313
Q ss_pred HHHHHHHHHHCCC--CCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 6889999841899--99541788999999629977899999999654543201554321223468888930485389762
Q 002772 437 IEISKTIFDDMEV--RDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGC 514 (882)
Q Consensus 437 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~ 514 (882)
+++|.++|+++.. ++..+|+.++..|.+.|++++|+.+|+++.+ ..+.+..++..++..+
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 288 LRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE------------------IDPYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------------------CCCCCHHHHHHHHHHH
T ss_conf 9999999987643883099999999999984689999999999997------------------2955379999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 3732078899999999992478740288899999991399899999972099---9990028999999981599268999
Q 002772 515 GALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLE 591 (882)
Q Consensus 515 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 591 (882)
...|+.++|.+++..+.+.. +.+..+++.++.+|.++|++++|.++|+++. +.+..+|+.++.+|.+.|++++|++
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 98277779999999998518-35479999999999983569999999999987297778999999999997577799999
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999981999986567855799999997411888999999998087219988936899999986204997999999982
Q 002772 592 LLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINM 671 (882)
Q Consensus 592 l~~~m~~~g~~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA~~~~~~ 671 (882)
+|++|.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+...|..++.++.+.|++++|.+++++
T Consensus 429 ~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 429 AYTTAARLF------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHHHHHHTT------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999999868------134389999999999857999999999999984--888767999999999981899999999999
Q ss_pred C-------CCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 9-------999991-10489999999822751599999999764799997129989999997699058999999998479
Q 002772 672 M-------PPEFDK-AGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 672 m-------~~~p~~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
+ +..|+. ...|..++.+|..+|+.+.|...+++++++.|+++..|..++++|...|+|++|.+.++++.+..
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 99853234545354999999999999980479999999999997389973899999999998178999999999997208
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=331.42 Aligned_cols=479 Identities=9% Similarity=-0.075 Sum_probs=311.0
Q ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCC--CCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 9742886999987716999789999983169--99912099999999956990189999999787899999201999999
Q 002772 111 SSVTVANTLVNMYGKCGSDMWDVYKVFDRIT--EKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVAL 188 (882)
Q Consensus 111 ~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 188 (882)
++...++.++..|.+.| ++++|..+|+++. .|+..+|..++..|.+.|++++|+.+|+.+... .
T Consensus 82 ~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~----------- 147 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQ-QYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--N----------- 147 (597)
T ss_dssp CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--G-----------
T ss_pred HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--C-----------
T ss_conf 89999999999998745-834799999999960899357999999999747699999999987335--4-----------
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC-------------------CCC
Q ss_conf 8406985431388989887462429970669999999878059916899997118999-------------------934
Q 002772 189 ACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDR-------------------DLV 249 (882)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-------------------~~~ 249 (882)
.+..+++.++.+|.++|++++|.++|+++... +..
T Consensus 148 --------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (597)
T 2xpi_A 148 --------------------------RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS 201 (597)
T ss_dssp --------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHH
T ss_pred --------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf --------------------------565089999999998866999999984248863223234334321123512589
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHCCCCCHHH--HHHH-HHHHHHHCCCCCCHHHHHHH
Q ss_conf 199999999719993799999999987799999301-8659888506899068--9999-99999818988825489999
Q 002772 250 SWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVS-IASVLPACSHLEMLDT--GKEI-HAYALRNDILIDNSFVGSAL 325 (882)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~~L 325 (882)
+|+.++.+|.+.|++++|.++|++|.+.+ |+..+ +..+...+...+.... ...+ +..+...+ ......+++.+
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~ 278 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED-AAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG-HHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHH
T ss_conf 99998899998399899999999999729--3256999999985034615678999865774234430-88999999999
Q ss_pred HHHHHCCCCHHHHHHHHHCCCC--CCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 9975518992789999721699--99100699999872199948999999999897298899013964886730179975
Q 002772 326 VDMYCNCREVECGRRVFDFISD--KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFP 403 (882)
Q Consensus 326 i~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~ 403 (882)
+..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+.+|++| ...+ +.+..++..++..+...|+.+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI-LEID-PYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HHCC-CCCHHHHHHHHHHHHHHCCHH
T ss_conf 99980731399999999876438830999999999999846899999999999-9729-553799999999999827777
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 03568999989289875578989999987249968899998418999954178899999962997789999999965454
Q 002772 404 DKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEE 483 (882)
Q Consensus 404 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 483 (882)
.+..++..+.+.. +.+..+++.++.+|.+.|++++|.++|+ ++.+
T Consensus 357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------~~~~--- 401 (597)
T 2xpi_A 357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS-------------------------------KSST--- 401 (597)
T ss_dssp HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH-------------------------------HHHH---
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHH-------------------------------HHHH---
T ss_conf 9999999998518-3547999999999998356999999999-------------------------------9987---
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 32015543212234688889304853897623732078899999999992478740288899999991399899999972
Q 002772 484 EKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFD 563 (882)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 563 (882)
. .+.+...++.++.+|.+.|++++|.++|+
T Consensus 402 ~--------------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 402 M--------------------------------------------------DPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp H--------------------------------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred H--------------------------------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 2--------------------------------------------------97778999999999997577799999999
Q ss_pred HCC---CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 099---99900289999999815992689999999998199998656785579999999741188899999999808721
Q 002772 564 LMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDY 640 (882)
Q Consensus 564 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 640 (882)
++. +.+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..++..+...+.+.|++++|.++|+++.+..
T Consensus 432 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF------QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 9998681343899999999998579999999999999848------8876799999999998189999999999999853
Q ss_pred ---CCCCC--HHHHHHHHHHHHCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf ---99889--368999999862049979999999829-999991104899999998227515999999997647999971
Q 002772 641 ---GIEPS--PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 641 ---~~~p~--~~~~~~li~~l~~~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
+..|+ ..+|..++.++.+.|++++|.+.++++ ...|+....|..++.+|...|+.+.|...++++++++|+++.
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 23454535499999999999998047999999999999738997389999999999817899999999999720888748
Q ss_pred HHHHHHHHHHH
Q ss_conf 29989999997
Q 002772 715 HYVLLSNIYSS 725 (882)
Q Consensus 715 ~~~~l~~~y~~ 725 (882)
.+..|+++|..
T Consensus 586 ~~~~l~~~~~~ 596 (597)
T 2xpi_A 586 ASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHTTC-
T ss_pred HHHHHHHHHHC
T ss_conf 99999998743
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=216.55 Aligned_cols=195 Identities=9% Similarity=0.079 Sum_probs=87.0
Q ss_pred EHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 09999999995699018999999978789999920199999984069854313889898874624299706699999998
Q 002772 147 SWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAM 226 (882)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~ 226 (882)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~-------------------------------- 75 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAE-------------------------------- 75 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCC--------------------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC--------------------------------
T ss_conf 999999999859899999999999998189987839999999998578--------------------------------
Q ss_pred HHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 78059916899997118999934199999999719993799999999987799999301865988850689906899999
Q 002772 227 YAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIH 306 (882)
Q Consensus 227 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 306 (882)
.... ..+.+.+++|.++|++|...|+.||..||++++.+|++.|+++.|.+++
T Consensus 76 -----~~~~----------------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 128 (501)
T 4g26_A 76 -----AATE----------------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMV 128 (501)
T ss_dssp -----CCSS----------------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -----CHHH----------------------HHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf -----3043----------------------3321249999999999998089998999999999998469778899999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99998189888254899999975518992789999721699991006999998721999489999999998972988990
Q 002772 307 AYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNA 386 (882)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~ 386 (882)
..|.+.| +.||..+ ||++|.+|++.|+.++|.++|++| ...|+.||.
T Consensus 129 ~~M~~~g-~~Pd~~t-------------------------------yn~lI~~~~~~g~~~~A~~l~~~M-~~~G~~Pd~ 175 (501)
T 4g26_A 129 KQMKAFG-IQPRLRS-------------------------------YGPALFGFCRKGDADKAYEVDAHM-VESEVVPEE 175 (501)
T ss_dssp HHHHHTT-CCCCHHH-------------------------------HHHHHHHHHHTTCHHHHHHHHHHH-HHTTCCCCH
T ss_pred HHHHHCC-CCCCCCE-------------------------------EHHHHHHHHHCCCHHHHHHHHHHH-HHCCCCCCH
T ss_conf 9999728-9886111-------------------------------048999999888999999999999-862999999
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 13964886730179975035689999892898755789899999872
Q 002772 387 TTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSR 433 (882)
Q Consensus 387 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 433 (882)
.||+.++.+|++.|+++.|.+++++|.+.|..|+..+|+.++..|..
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 99999999985389899999999999994899699999999999830
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=211.26 Aligned_cols=191 Identities=13% Similarity=0.089 Sum_probs=96.1
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 19999999971999379999999998779999930186598885068990689999999998189888254899999975
Q 002772 250 SWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMY 329 (882)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~y 329 (882)
.++.+|..|++.|++++|+++|++|.+.|++||..||+++|.+|+..+....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~---------------------------- 79 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE---------------------------- 79 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS----------------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH----------------------------
T ss_conf 9999999998598999999999999981899878399999999985783043----------------------------
Q ss_pred HCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 51899278999972169999100699999872199948999999999897298899013964886730179975035689
Q 002772 330 CNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIH 409 (882)
Q Consensus 330 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 409 (882)
....+..++|.++|++| ...|+.||..||+.++.+|++.|+++.|.+++
T Consensus 80 ------------------------------~~~~~~l~~A~~lf~~M-~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 128 (501)
T 4g26_A 80 ------------------------------SSPNPGLSRGFDIFKQM-IVDKVVPNEATFTNGARLAVAKDDPEMAFDMV 128 (501)
T ss_dssp ------------------------------SSCCHHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ------------------------------HHHCCHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf ------------------------------33212499999999999-98089998999999999998469778899999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC----CCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999892898755789899999872499688999984189----9995417889999996299778999999996545432
Q 002772 410 GHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME----VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEK 485 (882)
Q Consensus 410 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 485 (882)
++|.+.|+.||..+|+++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+ .
T Consensus 129 ~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~---~- 204 (501)
T 4g26_A 129 KQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD---L- 204 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-
T ss_pred HHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---H-
T ss_conf 999972898861110489999998889999999999998629999999999999998538989999999999999---4-
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 0155432122346888893048538976237
Q 002772 486 NRNNVYDLDETVLRPKPNSITLMTVLPGCGA 516 (882)
Q Consensus 486 ~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~ 516 (882)
+..|+..||..++..++.
T Consensus 205 -------------g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 205 -------------VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp -------------TSSBCHHHHHHHHHHHHS
T ss_pred -------------CCCCCHHHHHHHHHHHHC
T ss_conf -------------899699999999999830
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=202.42 Aligned_cols=311 Identities=14% Similarity=0.136 Sum_probs=207.5
Q ss_pred EHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 06999998721999489999999998972988990-13964886730179975035689999892898755789899999
Q 002772 352 LWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNA-TTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDM 430 (882)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 430 (882)
+|..+...+.+.|++++|+..|+++.. ..|+. .++..+...+...|+++.|...+..+.+.. +.+...+..+...
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALR---LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_conf 999999999877999999999999987---496539999999999998589999999999999759-8968999999999
Q ss_pred HHHCCCHHHHHHHHHHCC--CC-CEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 872499688999984189--99-954178899999962997789999999965454320155432122346888893048
Q 002772 431 YSRMGRIEISKTIFDDME--VR-DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITL 507 (882)
Q Consensus 431 y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~ 507 (882)
|...|++++|...|+.+. .| +...|..+...+...|++++|+..|+++.. . .|
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~----------------~p----- 200 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---L----------------DP----- 200 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---H----------------CT-----
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---C----------------CC-----
T ss_conf 99846899999999999872989789999999999985999999999999985---5----------------98-----
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCC
Q ss_conf 53897623732078899999999992478740288899999991399899999972099---999002899999998159
Q 002772 508 MTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHG 584 (882)
Q Consensus 508 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 584 (882)
.+...+..+...+...|++++|...|++.. +.+...|..+...|...|
T Consensus 201 -----------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 251 (388)
T 1w3b_A 201 -----------------------------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp -----------------------------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred -----------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf -----------------------------867999999999998578999999999998529687899999999999868
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 9268999999999819999865678-557999999974118889999999980872199889368999999862049979
Q 002772 585 EGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVE 663 (882)
Q Consensus 585 ~~~~A~~l~~~m~~~g~~~~~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~ 663 (882)
++++|++.|+++.+.+ |+ ..++..+...+...|++++|...|+++.+. .+.+...+..+..++.+.|+++
T Consensus 252 ~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 252 LIDLAIDTYRRAIELQ-------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp CHHHHHHHHHHHHHTC-------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHH
T ss_conf 8999999999998649-------998899999999999869979999999999864--9444999999999999848999
Q ss_pred HHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999999829-99999110489999999822751599999999764799997129989999997699
Q 002772 664 DAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQL 728 (882)
Q Consensus 664 eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 728 (882)
+|.+.++++ ...|+....|..+...+...|+.+.|...+++++++.|+++..|..++.+|...|+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 999999999860987399997799999986888999999999986199978999859999987459
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=195.62 Aligned_cols=352 Identities=14% Similarity=0.066 Sum_probs=271.6
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 987219994899999999989729889901-3964886730179975035689999892898755789899999872499
Q 002772 358 TGYGQNEYDEEALMLFIKMEEVAGLWPNAT-TMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGR 436 (882)
Q Consensus 358 ~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 436 (882)
..+.+.|++++|+..+.++.. ..|+.. .+..+...+...++++.+...+...++.. +.+...+..+...|.+.|+
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWR---QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCC
T ss_conf 999877999999999999998---497889999999999998689999999999997619-7866999999999987799
Q ss_pred HHHHHHHHHHCC--CC-CEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-HHHHHHH
Q ss_conf 688999984189--99-9541788999999629977899999999654543201554321223468888930-4853897
Q 002772 437 IEISKTIFDDME--VR-DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSI-TLMTVLP 512 (882)
Q Consensus 437 ~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~-t~~~ll~ 512 (882)
+++|...|+.+. .| +...|..+...+...|++++|+..|.++.+ ..|+.. .+..+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------------------~~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-------------------YNPDLYCVRSDLGN 143 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-------------------HCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------HCCCCHHHHHHHHH
T ss_conf 99999999999874965399999999999985899999999999997-------------------59896899999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 623732078899999999992478740288899999991399899999972099---99900289999999815992689
Q 002772 513 GCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEV 589 (882)
Q Consensus 513 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 589 (882)
.+...|++++|.+.+..+.+.. +.+...+..+...|.+.|++++|...|+++. +.+...|..+...+...|++++|
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 9998468999999999998729-897899999999999859999999999999855988679999999999985789999
Q ss_pred HHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999999819999865678-55799999997411888999999998087219988936899999986204997999999
Q 002772 590 LELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQL 668 (882)
Q Consensus 590 ~~l~~~m~~~g~~~~~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA~~~ 668 (882)
+..|++..... |+ ..++..+...+...|++++|...|+.+.+. .+.+...|..+...+.+.|++++|.+.
T Consensus 223 ~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 223 VAAYLRALSLS-------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999998529-------687899999999999868899999999999864--999889999999999986997999999
Q ss_pred HHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 9829-9999911048999999982275159999999976479999712998999999769905899999999847
Q 002772 669 INMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 669 ~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
++++ ...|+....|..+...+...|+.+.|...+++++++.|++...+..++.+|...|++++|...++++.+.
T Consensus 294 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 294 YNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999986494449999999999998489999999999998609873999977999999868889999999999861
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=187.87 Aligned_cols=224 Identities=11% Similarity=-0.036 Sum_probs=152.6
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCC
Q ss_conf 3897623732078899999999992478740288899999991399899999972099---9990028999999981599
Q 002772 509 TVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGE 585 (882)
Q Consensus 509 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 585 (882)
.+...+...|+++.|...+..+.+.... ...+..+...|...|++++|...|+++. +.+...|..+...|...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999999878999999999999863864--89999999999988889999999999861386778999999999998077
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 26899999999981999986567855799999997411888999999998087219988936899999986204997999
Q 002772 586 GQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDA 665 (882)
Q Consensus 586 ~~~A~~l~~~m~~~g~~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA 665 (882)
+++|+..|+++.... +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|
T Consensus 320 ~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD------PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp TTHHHHHHHHHHHTC------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 999999999998738------502899999999999868999999999999987--546778999999999878899999
Q ss_pred HHHHHHC----CCCCC----CHHHHHHHHHHHHH---CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9999829----99999----11048999999982---2751599999999764799997129989999997699058999
Q 002772 666 YQLINMM----PPEFD----KAGAWSSLLGACRI---HQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMD 734 (882)
Q Consensus 666 ~~~~~~m----~~~p~----~~~~~~~ll~a~~~---~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 734 (882)
...++++ +..+. .. .|..+...+.. .|+.+.|...+++++++.|+++..+..++.+|...|++++|..
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIA-PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSH-HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 9999999976123321789999-999999998663325888999999999987585558999999999998257999999
Q ss_pred HHHHHHHCC
Q ss_conf 999998479
Q 002772 735 VRKKMKEMG 743 (882)
Q Consensus 735 ~~~~m~~~g 743 (882)
.+++..+..
T Consensus 471 ~~~~a~~~~ 479 (514)
T 2gw1_A 471 LFEESADLA 479 (514)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
T ss_conf 999998766
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=186.59 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=144.9
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH-H
Q ss_conf 40288899999991399899999972099---9990028999999981599268999999999819999865678557-9
Q 002772 538 DVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVT-F 613 (882)
Q Consensus 538 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~~~t-~ 613 (882)
+...+..++.+|.+.|++++|...|+++. +.+..+|..++..|...|++++|+..|+++... .|+... +
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~ 248 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-------DQDHKRCF 248 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCHHHHH
T ss_conf 76999999999987799999999999999868898799999999999759999999999999875-------99808999
Q ss_pred HHH------------HHHHHCCCCHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHCCCCHHHHHHHHHHC-CCC
Q ss_conf 999------------99974118889999999980872199889-----368999999862049979999999829-999
Q 002772 614 IAL------------FAACSHSGMVSEGMDLFYKMKDDYGIEPS-----PDHYACVVDLLGRAGKVEDAYQLINMM-PPE 675 (882)
Q Consensus 614 ~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~l~~~g~~~eA~~~~~~m-~~~ 675 (882)
..+ ...+.+.|++++|..+|+.+... .|+ ..++..++.++.+.|++++|...++++ ...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99999999999999999998717999999999999850---873368999999999999998788999999999998848
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99110489999999822751599999999764799997129989999997
Q 002772 676 FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSS 725 (882)
Q Consensus 676 p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 725 (882)
|+....|..++.+|...|+.+.|...+++++++.|+++..+..++.+...
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 45489999999999870379999999999988593529999999999998
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=176.61 Aligned_cols=217 Identities=12% Similarity=0.038 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 32078899999999992478740288899999991399899999972099---999002899999998159926899999
Q 002772 517 LSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELL 593 (882)
Q Consensus 517 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 593 (882)
.++++.|...+..+.+.. |+...+..+...|...|++++|...|+++. +.+...|..+...|...|++++|++.|
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 455789999999998669--874699999999998037999999999975459998799999999998668999999999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 99998199998656785579999999741188899999999808721998893689999998620499799999998299
Q 002772 594 KNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMP 673 (882)
Q Consensus 594 ~~m~~~g~~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA~~~~~~m~ 673 (882)
+++.... +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++.
T Consensus 334 ~~a~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 334 QKAQSLN------PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHC------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999859------997799999999999847799999999999873--99985999999999988378899999999998
Q ss_pred ----CCCCC---HHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf ----99991---10489999999822----------75159999999976479999712998999999769905899999
Q 002772 674 ----PEFDK---AGAWSSLLGACRIH----------QNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVR 736 (882)
Q Consensus 674 ----~~p~~---~~~~~~ll~a~~~~----------~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 736 (882)
..+.. ...+..+...+... |+.+.|...+++++++.|+++..+..++.+|...|++++|...+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 70976244688899999889999997640100224757999999999999749997899999999999851499999999
Q ss_pred HHHHHCC
Q ss_conf 9998479
Q 002772 737 KKMKEMG 743 (882)
Q Consensus 737 ~~m~~~g 743 (882)
++..+..
T Consensus 486 ~~al~~~ 492 (537)
T 3fp2_A 486 EDSAILA 492 (537)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
T ss_conf 9999868
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=176.40 Aligned_cols=178 Identities=8% Similarity=-0.061 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 40288899999991399899999972099---999002899999998159926899999999981999986567855799
Q 002772 538 DVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFI 614 (882)
Q Consensus 538 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~~~t~~ 614 (882)
+...+..+...|...|++++|...|++.. +.+...|..+...|...|++++|+..|+++.... +.+...+.
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~ 376 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF------PEAPEVPN 376 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS------TTCSHHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------CCCHHHHH
T ss_conf 789999999999980779999999999987385028999999999998689999999999999875------46778999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHC---CCCHHHHHHHHHHC-CCCCCCHHHHHHHH
Q ss_conf 9999974118889999999980872199889----3689999998620---49979999999829-99999110489999
Q 002772 615 ALFAACSHSGMVSEGMDLFYKMKDDYGIEPS----PDHYACVVDLLGR---AGKVEDAYQLINMM-PPEFDKAGAWSSLL 686 (882)
Q Consensus 615 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~l~~---~g~~~eA~~~~~~m-~~~p~~~~~~~~ll 686 (882)
.+...+...|++++|...++.+.....-.+. ...+..+...+.+ .|++++|...++++ ...|+....|..+.
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 456 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA 456 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999987889999999999999761233217899999999999986633258889999999999875855589999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 99982275159999999976479999712998999
Q 002772 687 GACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSN 721 (882)
Q Consensus 687 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 721 (882)
..+...|+.+.|...+++++++.|+++..+..+..
T Consensus 457 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 457 QMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99998257999999999998766146889999999
Done!