Query 002773
Match_columns 882
No_of_seqs 418 out of 2174
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5560 UBP12 Ubiquitin C-term 100.0 5E-124 1E-128 1018.6 39.9 741 28-879 42-823 (823)
2 KOG1870 Ubiquitin C-terminal h 100.0 1.2E-98 3E-103 910.7 40.2 817 22-879 3-842 (842)
3 COG5533 UBP5 Ubiquitin C-termi 100.0 1E-64 2.2E-69 513.3 20.7 333 279-878 69-414 (415)
4 KOG1865 Ubiquitin carboxyl-ter 100.0 2.6E-64 5.7E-69 553.4 21.9 305 278-878 105-410 (545)
5 cd02663 Peptidase_C19G A subfa 100.0 8.1E-63 1.8E-67 540.8 25.9 287 283-876 1-300 (300)
6 cd02671 Peptidase_C19O A subfa 100.0 4.2E-60 9.1E-65 522.4 29.8 300 274-876 17-332 (332)
7 cd02660 Peptidase_C19D A subfa 100.0 4.5E-60 9.8E-65 526.4 30.3 318 282-876 1-328 (328)
8 cd02668 Peptidase_C19L A subfa 100.0 4.4E-60 9.6E-65 524.8 29.2 294 283-876 1-324 (324)
9 cd02669 Peptidase_C19M A subfa 100.0 2.1E-59 4.5E-64 537.0 31.0 305 276-876 114-440 (440)
10 cd02667 Peptidase_C19K A subfa 100.0 8.6E-60 1.9E-64 511.3 24.6 252 283-876 1-279 (279)
11 cd02664 Peptidase_C19H A subfa 100.0 3.8E-59 8.3E-64 517.2 25.0 277 283-876 1-327 (327)
12 KOG1868 Ubiquitin C-terminal h 100.0 1.9E-59 4.2E-64 539.6 17.7 342 277-881 297-649 (653)
13 cd02657 Peptidase_C19A A subfa 100.0 1.2E-57 2.6E-62 501.7 27.4 287 283-876 1-305 (305)
14 cd02658 Peptidase_C19B A subfa 100.0 3.1E-57 6.7E-62 499.8 29.3 292 283-876 1-311 (311)
15 cd02661 Peptidase_C19E A subfa 100.0 7.2E-57 1.6E-61 495.1 28.1 302 281-875 1-303 (304)
16 cd02659 peptidase_C19C A subfa 100.0 2E-56 4.3E-61 498.5 27.8 298 280-879 1-333 (334)
17 cd02662 Peptidase_C19F A subfa 100.0 2E-51 4.2E-56 435.7 22.5 123 730-876 95-240 (240)
18 KOG1873 Ubiquitin-specific pro 100.0 3.1E-50 6.8E-55 448.5 13.8 149 729-878 676-877 (877)
19 cd02674 Peptidase_C19R A subfa 100.0 5.8E-49 1.3E-53 414.8 20.4 147 730-876 83-230 (230)
20 cd02673 Peptidase_C19Q A subfa 100.0 7.3E-46 1.6E-50 391.2 20.0 129 732-876 111-245 (245)
21 KOG1867 Ubiquitin-specific pro 100.0 1E-45 2.3E-50 420.0 17.3 322 277-879 157-485 (492)
22 cd02665 Peptidase_C19I A subfa 100.0 3E-45 6.5E-50 379.1 17.3 126 732-876 94-228 (228)
23 PF00443 UCH: Ubiquitin carbox 100.0 1.6E-44 3.4E-49 387.6 20.9 258 281-875 1-269 (269)
24 KOG0944 Ubiquitin-specific pro 100.0 1.9E-44 4.2E-49 399.0 20.7 153 276-462 302-465 (763)
25 cd02666 Peptidase_C19J A subfa 100.0 3.9E-44 8.5E-49 394.6 15.9 290 281-876 1-343 (343)
26 KOG1866 Ubiquitin carboxyl-ter 100.0 1.3E-44 2.9E-49 401.9 4.5 305 276-881 90-437 (944)
27 COG5077 Ubiquitin carboxyl-ter 100.0 2E-42 4.3E-47 384.5 6.4 295 279-880 191-513 (1089)
28 cd02257 Peptidase_C19 Peptidas 100.0 5.8E-40 1.3E-44 347.6 21.3 142 731-876 99-255 (255)
29 cd02672 Peptidase_C19P A subfa 100.0 1.3E-40 2.7E-45 356.1 13.2 136 730-876 116-268 (268)
30 KOG4598 Putative ubiquitin-spe 100.0 5.3E-41 1.2E-45 368.6 1.8 147 732-879 215-442 (1203)
31 COG5207 UBP14 Isopeptidase T [ 100.0 7.1E-38 1.5E-42 335.2 18.1 146 281-459 303-453 (749)
32 KOG1863 Ubiquitin carboxyl-ter 100.0 7.6E-36 1.6E-40 371.4 13.3 298 279-880 167-487 (1093)
33 cd02670 Peptidase_C19N A subfa 100.0 5.2E-35 1.1E-39 305.3 15.8 123 730-876 79-241 (241)
34 KOG1864 Ubiquitin-specific pro 100.0 8.4E-34 1.8E-38 327.3 15.4 331 277-878 228-572 (587)
35 PF13423 UCH_1: Ubiquitin carb 100.0 4E-30 8.8E-35 281.3 23.4 284 282-857 1-295 (295)
36 KOG1871 Ubiquitin-specific pro 100.0 1.6E-28 3.4E-33 259.0 12.8 122 757-879 287-420 (420)
37 KOG2026 Spindle pole body prot 100.0 4E-28 8.8E-33 254.4 14.3 304 274-878 127-441 (442)
38 KOG1872 Ubiquitin-specific pro 99.9 5.7E-27 1.2E-31 253.9 5.5 236 165-458 19-262 (473)
39 PF06337 DUSP: DUSP domain; I 99.8 3.7E-20 7.9E-25 168.6 6.6 97 30-136 1-98 (99)
40 smart00695 DUSP Domain in ubiq 99.7 2.9E-18 6.2E-23 151.7 8.4 82 28-136 2-84 (86)
41 PF14836 Ubiquitin_3: Ubiquiti 99.5 9.7E-14 2.1E-18 119.5 8.7 83 151-234 2-88 (88)
42 KOG1275 PAB-dependent poly(A) 99.5 2.8E-13 6E-18 156.1 14.0 123 752-875 702-860 (1118)
43 PF14533 USP7_C2: Ubiquitin-sp 98.0 3.4E-05 7.5E-10 80.1 11.6 143 452-606 2-156 (213)
44 KOG1864 Ubiquitin-specific pro 96.8 0.0023 5E-08 75.6 6.9 105 284-388 34-152 (587)
45 PF15499 Peptidase_C98: Ubiqui 96.3 0.003 6.6E-08 65.2 3.7 81 753-856 172-252 (275)
46 PF14560 Ubiquitin_2: Ubiquiti 95.5 0.12 2.7E-06 45.5 9.8 65 161-225 15-81 (87)
47 PTZ00044 ubiquitin; Provisiona 94.7 0.15 3.2E-06 43.6 7.8 65 158-228 9-73 (76)
48 cd01796 DDI1_N DNA damage indu 94.4 0.16 3.4E-06 43.0 7.1 62 158-224 8-69 (71)
49 cd01807 GDX_N ubiquitin-like d 94.1 0.22 4.7E-06 42.4 7.4 64 158-227 9-72 (74)
50 cd01799 Hoil1_N Ubiquitin-like 93.8 0.24 5.1E-06 42.5 6.9 60 159-224 12-72 (75)
51 cd01806 Nedd8 Nebb8-like ubiq 93.2 0.51 1.1E-05 40.1 8.2 65 158-228 9-73 (76)
52 cd01763 Sumo Small ubiquitin-r 92.9 0.81 1.8E-05 40.3 9.1 64 158-227 20-83 (87)
53 cd01803 Ubiquitin Ubiquitin. U 92.7 0.54 1.2E-05 39.9 7.7 65 158-228 9-73 (76)
54 cd01812 BAG1_N Ubiquitin-like 92.7 0.42 9.1E-06 40.1 6.9 65 155-225 5-69 (71)
55 cd01789 Alp11_N Ubiquitin-like 92.2 1 2.2E-05 39.5 8.8 65 161-225 14-79 (84)
56 cd01810 ISG15_repeat2 ISG15 ub 92.0 0.84 1.8E-05 38.8 7.9 66 157-228 6-71 (74)
57 cd01794 DC_UbP_C dendritic cel 91.7 0.64 1.4E-05 39.2 6.7 61 158-224 7-67 (70)
58 cd01795 USP48_C USP ubiquitin- 91.3 0.56 1.2E-05 41.7 6.0 62 161-227 16-77 (107)
59 PF00240 ubiquitin: Ubiquitin 91.2 1.1 2.4E-05 37.3 7.7 63 159-227 5-67 (69)
60 cd01798 parkin_N amino-termina 91.1 1.1 2.3E-05 37.7 7.5 61 158-224 7-67 (70)
61 cd01809 Scythe_N Ubiquitin-lik 90.5 1.2 2.7E-05 37.2 7.4 61 158-224 9-69 (72)
62 cd01793 Fubi Fubi ubiquitin-li 90.5 1.5 3.4E-05 37.2 8.0 62 160-227 9-70 (74)
63 cd01808 hPLIC_N Ubiquitin-like 90.3 1.3 2.9E-05 37.2 7.5 58 162-225 12-69 (71)
64 PF00789 UBX: UBX domain; Int 90.3 2.1 4.5E-05 37.1 8.8 68 156-225 13-81 (82)
65 cd01800 SF3a120_C Ubiquitin-li 89.9 1.3 2.9E-05 37.8 7.2 63 160-228 8-70 (76)
66 cd01802 AN1_N ubiquitin-like d 89.2 2.1 4.5E-05 39.1 8.2 65 158-228 36-100 (103)
67 cd01805 RAD23_N Ubiquitin-like 89.0 2.5 5.4E-05 36.0 8.3 64 158-227 9-74 (77)
68 cd01791 Ubl5 UBL5 ubiquitin-li 88.5 2.5 5.5E-05 35.9 7.8 61 159-225 11-71 (73)
69 cd01804 midnolin_N Ubiquitin-l 88.4 2.1 4.6E-05 36.8 7.4 62 159-227 11-72 (78)
70 cd01797 NIRF_N amino-terminal 88.2 2.4 5.1E-05 36.6 7.5 60 163-228 15-75 (78)
71 cd01792 ISG15_repeat1 ISG15 ub 87.4 3.1 6.6E-05 36.0 7.8 66 158-227 11-76 (80)
72 smart00166 UBX Domain present 86.8 4.6 9.9E-05 34.9 8.6 67 156-225 11-79 (80)
73 cd01813 UBP_N UBP ubiquitin pr 86.4 3 6.6E-05 35.5 7.1 65 155-224 5-71 (74)
74 PF11543 UN_NPL4: Nuclear pore 86.3 1.8 3.9E-05 37.5 5.7 66 158-225 12-78 (80)
75 PF11976 Rad60-SLD: Ubiquitin- 85.9 3.2 7E-05 34.8 7.1 59 158-222 9-68 (72)
76 smart00213 UBQ Ubiquitin homol 84.2 3.6 7.8E-05 33.2 6.4 54 160-219 10-63 (64)
77 cd01767 UBX UBX (ubiquitin reg 82.7 8.5 0.00018 32.9 8.4 67 156-225 9-75 (77)
78 cd01774 Faf1_like2_UBX Faf1 ik 82.3 9.4 0.0002 33.5 8.5 69 156-225 11-83 (85)
79 PF05408 Peptidase_C28: Foot-a 82.0 0.69 1.5E-05 45.8 1.4 24 279-302 31-54 (193)
80 cd01769 UBL Ubiquitin-like dom 81.5 5.3 0.00011 32.7 6.5 60 159-224 7-66 (69)
81 cd01771 Faf1_UBX Faf1 UBX doma 81.5 7.6 0.00016 33.7 7.5 70 156-227 11-80 (80)
82 PF02196 RBD: Raf-like Ras-bin 79.9 13 0.00027 31.5 8.2 64 156-226 7-70 (71)
83 cd01773 Faf1_like1_UBX Faf1 ik 77.0 19 0.00041 31.4 8.5 71 155-227 11-81 (82)
84 cd01817 RGS12_RBD Ubiquitin do 74.4 17 0.00037 30.8 7.2 65 156-227 6-70 (73)
85 PF05408 Peptidase_C28: Foot-a 73.9 3.9 8.4E-05 40.7 3.9 35 828-863 129-165 (193)
86 COG3478 Predicted nucleic-acid 73.1 3.1 6.7E-05 33.8 2.4 37 749-785 2-40 (68)
87 cd01760 RBD Ubiquitin-like dom 70.6 18 0.00039 30.7 6.7 65 156-226 6-71 (72)
88 cd06406 PB1_P67 A PB1 domain i 70.1 24 0.00052 30.5 7.3 46 148-196 2-47 (80)
89 PF11470 TUG-UBL1: GLUT4 regul 69.3 8.1 0.00018 32.1 4.3 59 157-221 4-62 (65)
90 cd01772 SAKS1_UBX SAKS1-like U 68.1 24 0.00051 30.4 7.2 68 156-225 11-78 (79)
91 PF14560 Ubiquitin_2: Ubiquiti 66.2 42 0.00092 29.3 8.6 64 482-545 14-80 (87)
92 TIGR00601 rad23 UV excision re 64.8 18 0.0004 41.0 7.4 64 158-227 9-75 (378)
93 KOG0010 Ubiquitin-like protein 61.4 21 0.00046 41.0 7.0 72 150-227 15-86 (493)
94 smart00455 RBD Raf-like Ras-bi 61.2 32 0.0007 29.0 6.5 64 156-226 6-69 (70)
95 cd01768 RA RA (Ras-associating 60.5 54 0.0012 28.4 8.2 53 482-534 13-67 (87)
96 PF14533 USP7_C2: Ubiquitin-sp 59.6 37 0.00081 35.3 8.1 64 160-226 34-100 (213)
97 KOG1870 Ubiquitin C-terminal h 59.5 5.5 0.00012 50.2 2.2 120 730-861 481-600 (842)
98 cd01770 p47_UBX p47-like ubiqu 58.5 61 0.0013 27.9 7.9 61 156-219 11-72 (79)
99 PF00788 RA: Ras association ( 57.0 58 0.0013 28.3 7.9 45 149-193 3-52 (93)
100 cd01788 ElonginB Ubiquitin-lik 54.1 66 0.0014 29.7 7.5 69 158-232 10-86 (119)
101 PF08715 Viral_protease: Papai 52.1 21 0.00045 39.5 4.9 79 278-385 99-178 (320)
102 PF08817 YukD: WXG100 protein 51.8 52 0.0011 28.2 6.5 72 151-224 3-78 (79)
103 KOG1871 Ubiquitin-specific pro 49.4 9 0.00019 42.6 1.6 112 277-389 174-315 (420)
104 PLN02560 enoyl-CoA reductase 48.5 58 0.0012 36.0 7.7 65 163-230 17-84 (308)
105 cd01815 BMSC_UbP_N Ubiquitin-l 45.1 45 0.00097 28.6 4.8 51 168-224 19-72 (75)
106 PF01473 CW_binding_1: Putativ 44.6 17 0.00038 22.1 1.7 14 841-855 3-16 (19)
107 PF09379 FERM_N: FERM N-termin 43.4 2E+02 0.0044 24.2 9.1 60 157-217 4-65 (80)
108 cd01777 SNX27_RA Ubiquitin dom 43.2 46 0.00099 29.3 4.6 41 149-190 2-42 (87)
109 smart00314 RA Ras association 42.9 1.8E+02 0.0039 25.3 8.8 52 483-534 17-69 (90)
110 cd01768 RA RA (Ras-associating 41.9 1E+02 0.0022 26.7 6.9 40 159-198 12-53 (87)
111 smart00666 PB1 PB1 domain. Pho 40.6 95 0.0021 26.4 6.4 44 150-195 3-46 (81)
112 cd06535 CIDE_N_CAD CIDE_N doma 40.6 53 0.0011 28.2 4.5 56 169-232 20-75 (77)
113 cd01791 Ubl5 UBL5 ubiquitin-li 40.0 1.6E+02 0.0034 25.0 7.4 57 483-546 13-71 (73)
114 COG3651 Uncharacterized protei 40.0 18 0.0004 32.3 1.7 17 25-41 74-90 (125)
115 PF13881 Rad60-SLD_2: Ubiquiti 37.6 2.2E+02 0.0047 26.4 8.5 74 149-228 3-87 (111)
116 cd01790 Herp_N Homocysteine-re 36.7 1.5E+02 0.0033 25.7 6.8 55 162-222 16-74 (79)
117 cd01787 GRB7_RA RA (RAS-associ 36.0 1.5E+02 0.0033 26.0 6.7 61 468-532 3-64 (85)
118 cd00196 UBQ Ubiquitin-like pro 35.3 57 0.0012 24.7 4.0 37 158-194 6-42 (69)
119 PF00788 RA: Ras association ( 34.0 2.4E+02 0.0051 24.4 8.1 66 469-534 4-71 (93)
120 smart00314 RA Ras association 33.6 2.1E+02 0.0044 25.0 7.6 39 158-196 14-54 (90)
121 KOG3751 Growth factor receptor 32.9 45 0.00098 38.6 3.8 75 460-538 181-256 (622)
122 smart00295 B41 Band 4.1 homolo 32.6 2.9E+02 0.0063 27.7 9.8 51 148-199 3-54 (207)
123 KOG1867 Ubiquitin-specific pro 32.0 19 0.00042 42.3 0.8 103 278-385 74-181 (492)
124 cd01782 AF6_RA_repeat1 Ubiquit 31.9 4.1E+02 0.009 24.5 9.0 73 457-529 10-87 (112)
125 KOG1769 Ubiquitin-like protein 31.0 2.6E+02 0.0057 25.3 7.5 66 150-222 22-87 (99)
126 PF12436 USP7_ICP0_bdg: ICP0-b 30.1 77 0.0017 33.8 5.0 64 163-227 88-152 (249)
127 cd01779 Myosin_IXb_RA ubitquit 29.3 3.5E+02 0.0076 24.3 7.7 54 469-522 12-65 (105)
128 cd01799 Hoil1_N Ubiquitin-like 28.5 2.3E+02 0.0049 24.1 6.6 31 482-512 13-43 (75)
129 PF12436 USP7_ICP0_bdg: ICP0-b 27.9 1.2E+02 0.0027 32.2 6.1 39 159-197 189-227 (249)
130 KOG4495 RNA polymerase II tran 27.4 1E+02 0.0022 27.5 4.2 56 159-218 11-66 (110)
131 PF13019 Telomere_Sde2: Telome 27.2 3.4E+02 0.0073 27.0 8.3 54 470-523 3-56 (162)
132 cd01789 Alp11_N Ubiquitin-like 26.9 2.8E+02 0.0061 24.1 7.1 31 484-514 15-45 (84)
133 PF15499 Peptidase_C98: Ubiqui 26.2 2E+02 0.0043 30.7 6.8 27 285-311 6-32 (275)
134 PF02017 CIDE-N: CIDE-N domain 25.9 2.2E+02 0.0047 24.7 5.9 31 169-199 20-50 (78)
135 PF00770 Peptidase_C5: Adenovi 25.7 86 0.0019 31.1 3.9 31 824-854 21-53 (183)
136 cd01769 UBL Ubiquitin-like dom 25.6 2E+02 0.0044 23.0 5.8 29 484-512 10-38 (69)
137 cd01615 CIDE_N CIDE_N domain, 25.4 1.6E+02 0.0034 25.5 5.0 31 169-199 20-50 (78)
138 cd01801 Tsc13_N Ubiquitin-like 25.1 1.8E+02 0.004 24.6 5.5 54 167-224 20-74 (77)
139 cd06396 PB1_NBR1 The PB1 domai 25.1 2.4E+02 0.0051 24.6 6.0 56 156-214 6-63 (81)
140 cd01802 AN1_N ubiquitin-like d 24.4 3E+02 0.0065 25.0 7.0 56 451-512 13-68 (103)
141 PF09855 DUF2082: Nucleic-acid 22.7 74 0.0016 26.4 2.4 34 752-785 1-36 (64)
142 cd01816 Raf_RBD Ubiquitin doma 21.9 5E+02 0.011 22.2 7.1 67 157-226 7-73 (74)
143 cd01804 midnolin_N Ubiquitin-l 21.6 2.4E+02 0.0052 24.0 5.6 41 468-512 2-42 (78)
144 cd01814 NTGP5 Ubiquitin-like N 21.5 2.8E+02 0.006 25.8 6.1 54 159-218 15-75 (113)
145 PRK13798 putative OHCU decarbo 21.1 1E+02 0.0022 30.8 3.5 29 579-608 110-138 (166)
146 smart00266 CAD Domains present 21.0 1.4E+02 0.0031 25.5 3.8 31 169-199 18-48 (74)
147 PF11834 DUF3354: Domain of un 21.0 3.7E+02 0.008 22.7 6.3 44 491-545 25-68 (69)
148 cd01811 OASL_repeat1 2'-5' oli 20.8 5.5E+02 0.012 22.1 7.1 64 160-225 11-75 (80)
149 TIGR03164 UHCUDC OHCU decarbox 20.6 1E+02 0.0023 30.4 3.5 29 579-608 105-133 (157)
150 cd06407 PB1_NLP A PB1 domain i 20.6 2.9E+02 0.0062 24.1 5.8 47 158-204 8-55 (82)
151 PF00240 ubiquitin: Ubiquitin 20.5 1.7E+02 0.0036 23.9 4.3 33 483-515 7-39 (69)
152 PF09996 DUF2237: Uncharacteri 20.4 46 0.001 30.8 0.9 23 25-47 67-89 (117)
153 cd01806 Nedd8 Nebb8-like ubiq 20.3 2.7E+02 0.0059 23.0 5.7 39 470-512 3-41 (76)
No 1
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-124 Score=1018.58 Aligned_cols=741 Identities=33% Similarity=0.505 Sum_probs=567.7
Q ss_pred CCCCEEEEEcchhHHHHHHhcCCCCcccccccccccCCCCCCCCCCCCCcccChhhccccccchhcccCcCCccCCCCCC
Q 002773 28 DNDQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSG 107 (882)
Q Consensus 28 ~~g~~~ylIs~~W~~~w~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~l~~~l~e~ 107 (882)
+.++..|+++..|+...-++...+ ...||||+-.+++. +....++..+.++
T Consensus 42 k~~~~a~i~~y~wyeg~fd~~~~d--------------------g~~pgPi~q~~i~d---------~e~e~lk~sl~e~ 92 (823)
T COG5560 42 KQCEYAVIFAYAWYEGMFDRASCD--------------------GGSPGPIVQGPIVD---------FEPESLKKSLREG 92 (823)
T ss_pred ccCceEEEEehHHhhhhccccccc--------------------CCCCCCCCcccccc---------cChhhcchhhhcC
Confidence 348999999999999887766532 23499998888875 1277899999999
Q ss_pred CCEEEeCHHHHHHHHhcCC-CCcccceeee---cccccccccccceEEEEEEeec---------CCeeEEEEcccccHHH
Q 002773 108 RDYALVPGEMWLQALKCDT-KVAAKNRKSF---LASEDDMADVYPLQLRLSVMRE---------TNSLGVKISKKDNAVE 174 (882)
Q Consensus 108 ~dy~~Vp~~~w~~l~~~yg-~~~~i~R~Vi---~~~~~~v~EvyP~~l~l~~~~~---------~~~~~~~~Sr~~ti~~ 174 (882)
.||..|.+.+|+.|.+||| .|+.++|.++ ......+ |+||..++++...+ .....+.+|+..|+.+
T Consensus 93 idysiis~~vw~llvrwyGl~gl~~pr~tvll~ses~p~v-e~yp~~f~lh~Lf~ing~~~n~gh~p~~~s~ss~~tlrd 171 (823)
T COG5560 93 IDYSIISGAVWQLLVRWYGLAGLITPRITVLLPSESAPEV-ESYPVVFKLHWLFSINGSLINLGHDPVPHSASSHGTLRD 171 (823)
T ss_pred CCeeeechHHHHHHHHHhcccccceeeEEeccccccCCcc-ccccceEEEEEEEeccchhhhcCCCcceeeccccchHHH
Confidence 9999999999999999999 5788899885 3344456 99999999988654 1356789999999999
Q ss_pred HHHHHHhHcCCCCcceEEEEecCCcceeeccCCCc-----------------cchhhccCCCceEEEEE-EecCcccccc
Q 002773 175 LFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNK-----------------FSKDCLRLSDHEILLEL-QIYGLSDSLK 236 (882)
Q Consensus 175 l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~-----------------tL~~~~l~~~q~IllE~-~~~g~w~~~~ 236 (882)
+.+++...|-++.+++|||++.......-+...+. |+.+..... ...+|+. ..++.|+...
T Consensus 172 l~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~s~f~~~~~~a~~~~~l~~~t~~el~~d~-s~lll~kit~np~wlvds 250 (823)
T COG5560 172 LSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLDSFFRRYRVLASDGRVLHPLTRLELFEDR-SVLLLSKITRNPDWLVDS 250 (823)
T ss_pred HHHHHHHHhcCcccceeEEEecCCcccccccCHHHHhhcchhccchhhhcccHHHHhccch-hhhHHhhhccCCccceee
Confidence 99999999999999999999875442221111000 011111111 1111111 1334444321
Q ss_pred cccCCcccccccccCCCcCCCCcccccCCcccccCCCCCCCCCCccccccCCCcccHHHHHHHHhCChHHHHHHHh-ccc
Q 002773 237 CREGRKDEMAVQHSNGSLTNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLG-DYF 315 (882)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~-~~~ 315 (882)
- -..+..+ . .+ . .|.|||.|+||||||||+||||.||+.|++||++ .|.
T Consensus 251 i------------------------~~~~n~s---i-nk-e-~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye 300 (823)
T COG5560 251 I------------------------VDDHNRS---I-NK-E-AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYE 300 (823)
T ss_pred e------------------------cchhhhh---H-Hh-h-ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhH
Confidence 0 0000000 0 11 2 3999999999999999999999999999999995 699
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHHhcCCCCCCCChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 002773 316 REINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKP 395 (882)
Q Consensus 316 ~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~ 395 (882)
.++|.+||+|+.|.+|.+|+.|+++++.++..+++|+.|+..|+.++..|+||.|||+|||++||||+|||+|||+.+||
T Consensus 301 ~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~Kp 380 (823)
T COG5560 301 ESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKP 380 (823)
T ss_pred hhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCC---ChHHHHHHHHHHhhccCCCcceeccceEEEEEEEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEE
Q 002773 396 YAEAKDGDGR---SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTV 472 (882)
Q Consensus 396 ~~~~~~~~~~---~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~ 472 (882)
|.+.++-... ..+..|+++|..|++||+|+|+|||+|.++||++|+.|+.+|++||||++|+||||....|.++|++
T Consensus 381 ytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~ 460 (823)
T COG5560 381 YTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVV 460 (823)
T ss_pred ccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEE
Confidence 9998864333 3456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecceeEEcccCCcc-cccccCCCCcEEEEEecCC
Q 002773 473 VNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPAD-SISLIRDDDQLVAYRLRKE 551 (882)
Q Consensus 473 ~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~-~l~~i~~~d~i~~ye~~~~ 551 (882)
||.+|...| +.+++.+.+++.+|++.+....|+.....+.+.++|..++++.++.... .+..|.+.|.+|.|+ .
T Consensus 461 fp~~g~~~p--l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe---~ 535 (823)
T COG5560 461 FPESGRRQP--LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---T 535 (823)
T ss_pred ECCCCCCCc--eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEee---c
Confidence 999998877 6778889999999999998888887777889999999999999987666 457899999999999 4
Q ss_pred CCCCCeEEEEeehhhhhhhcCCcCCCCcccCccE-EEEe-ccccChHHHHHHHHHHcCCcccCcccccCCCcCCCCchhh
Q 002773 552 NDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPL-VAKV-SYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIE 629 (882)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~-~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 629 (882)
.++...++++|.+.+.. +.+..+||.|+ -..+ ..+.-..+|.+.+.+++......
T Consensus 536 ~~ngi~vpvvh~~~~~g------Yks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k----------------- 592 (823)
T COG5560 536 NDNGIEVPVVHLRIEKG------YKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMK----------------- 592 (823)
T ss_pred CCCCeEEEEEecccccc------ccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhc-----------------
Confidence 44557899999866542 46778999996 2333 33333344433333332111000
Q ss_pred hhhccccc-cccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCccccccccCcccccCCCCCceEEEEEecchhhh-hhc
Q 002773 630 EVTRIVDN-VPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIE-QYD 707 (882)
Q Consensus 630 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~-~~~ 707 (882)
.+|.+.. .+..-...++ . ..+-|....+. .....++..++.+ .+......|.|+|...... .|.
T Consensus 593 -~tdvd~~~~q~~l~r~es-------~---p~~wl~l~tei-d~kree~veeE~~--~n~nd~vvi~cew~ek~y~~lFs 658 (823)
T COG5560 593 -KTDVDLVSEQVRLLREES-------S---PSSWLKLETEI-DTKREEQVEEEGQ--MNFNDAVVISCEWEEKRYLSLFS 658 (823)
T ss_pred -chhhhhhhhhccchhccc-------C---cchhhhhhhhc-cchhhhhhhhhhc--cCCCcceEEeeeccccchhhhhc
Confidence 0000000 0000000000 0 00000000000 0000000001111 1234567788999988665 342
Q ss_pred cccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeec
Q 002773 708 TRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSR 787 (882)
Q Consensus 708 ~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~ 787 (882)
+ ..+.-..+.+. ..+.+||+|||+.|.++|.|+..|.||||.||++++|+|+++||++|.|||||||||++.+
T Consensus 659 --y-~~lw~~~ei~~----~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~r 731 (823)
T COG5560 659 --Y-DPLWTIREIGA----AERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVR 731 (823)
T ss_pred --C-CccchhHHhhh----ccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcc
Confidence 0 00000111111 1368999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeecccCCCCccccccccCCccCceeeEEEEEEeeccCCCceEEEEEEc-CCCCEEEEcCCcceeeCccccC
Q 002773 788 FSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIK 866 (882)
Q Consensus 788 ~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVi~H~G~l~gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v~ 866 (882)
.+++||++.|.|||.+|||+.|+....+ ....|+||||.||||++||||||||+|| .+++||+|||++|+++.+++.+
T Consensus 732 sfrdKiddlVeyPiddldLs~~~~~~~~-p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdped~v 810 (823)
T COG5560 732 SFRDKIDDLVEYPIDDLDLSGVEYMVDD-PRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSV 810 (823)
T ss_pred cchhhhhhhhccccccccccceEEeecC-cceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCccccc
Confidence 9999999999999999999999987755 4499999999999999999999999999 6679999999999999999999
Q ss_pred CCCcEEEEEEEec
Q 002773 867 TSAAYVLFYRRVV 879 (882)
Q Consensus 867 s~~AYvLFY~R~~ 879 (882)
+++||||||+|+.
T Consensus 811 tssaYvLFyrrk~ 823 (823)
T COG5560 811 TSSAYVLFYRRKS 823 (823)
T ss_pred cceeEEEEEEecC
Confidence 9999999999973
No 2
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-98 Score=910.73 Aligned_cols=817 Identities=34% Similarity=0.516 Sum_probs=636.9
Q ss_pred cccCCCCCCCEEEEEcchhHHHHHHhcCCCCcccccccccccCCCCCCCCCCCCCcccChhhccccccchhcccCcCCcc
Q 002773 22 SNNNNNDNDQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENG 101 (882)
Q Consensus 22 ~~~~~~~~g~~~ylIs~~W~~~w~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~l~ 101 (882)
.++..++.|+.+++|..+|+.+|++|++.. ... + . +..+....++|++||.+.+. ++.. ...+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~----~--~--~~~~~~~~k~~~~~n~~~~~----~~~~---~~~~~ 66 (842)
T KOG1870|consen 3 ESRRTCKSGKSHGLILWRCLEQWQSYVGLE-SYH----E--I--STIHSQAPKHGLTDNLTFLR----CDAC---DKTLR 66 (842)
T ss_pred ccccccccccccchhhhhhhhhccccccce-eee----c--c--ccccccccccccccCccchh----Hhhh---hhHHH
Confidence 356678899999999999999999999951 111 0 0 11123466799999999886 1211 12889
Q ss_pred CCCCCCCCEEEeCHHHHHHHHhcC-CCCcccceeee----cccccccccccceEEEEEEeecCCeeEEEEcccccHHHHH
Q 002773 102 EVGVSGRDYALVPGEMWLQALKCD-TKVAAKNRKSF----LASEDDMADVYPLQLRLSVMRETNSLGVKISKKDNAVELF 176 (882)
Q Consensus 102 ~~l~e~~dy~~Vp~~~w~~l~~~y-g~~~~i~R~Vi----~~~~~~v~EvyP~~l~l~~~~~~~~~~~~~Sr~~ti~~l~ 176 (882)
..+.++.||.++|+++|+.+.+|| .+++++.|.|+ ....+.+ |+||..+.++.........+..+..+|+.++.
T Consensus 67 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~r~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 145 (842)
T KOG1870|consen 67 VSLLEGLDYTISPRSVQKLLVEWFKSGGAAILRAVFDEGEIERDDFV-ELYPRGLTLLKNSGNSRTSLALQADSTCPPLT 145 (842)
T ss_pred hhhccccccccCCHHHHhhccccccCCCccchhhhhcccccccCCcc-cccchhhhhccCCCCccceeccccccCccHHH
Confidence 999999999999999999999999 57789999997 2233677 99999999998776544448999999999999
Q ss_pred HHHHhHcCCCCcceEEEEecCCcceeeccCCC-ccchhhccCCCceEEEEEE-ecCcccccccccCCcccccccccCCCc
Q 002773 177 KRACKIFSIESELLHIWDFSGQTTLYFLNDKN-KFSKDCLRLSDHEILLELQ-IYGLSDSLKCREGRKDEMAVQHSNGSL 254 (882)
Q Consensus 177 ~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~-~tL~~~~l~~~q~IllE~~-~~g~w~~~~~~~~~~~~~~~~~~~~~~ 254 (882)
+..+..+.++.+..|||.++......++.... .++..+.+..++++++|+. .++.|+++......... +.. ....
T Consensus 146 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~ 222 (842)
T KOG1870|consen 146 SYFLESGGLPRTKFAIWASYNEKYLSLWYKSDPGKLVPTVLFQGRKMVLEVFRKFASQPSDMTLRCWMDW--LSE-RDPD 222 (842)
T ss_pred HHHHHhcCCCcccchhhhhhhHhhhcccccccccccccccccccceEEeeeccccccchhhhchhhcccc--ccc-cccc
Confidence 99999999999999999998877666666555 6788889999999999999 47888876432111000 000 0000
Q ss_pred CCCCcccccCCcccccCCCCCCCCCCccccccCCCcccHHHHHHHHhCChHHHHHHHhc-cccccCCCCCCCCchHHHHH
Q 002773 255 TNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALA 333 (882)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~ 333 (882)
.+++ .. ++.............+|.+||.|+||||||||++|||.+.+++++||+.. +..++|..|++++.+.++.+
T Consensus 223 ~~~~-~~--s~~~~~~~~~~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~ 299 (842)
T KOG1870|consen 223 ASGT-KE--TRVDFPSEEISSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASS 299 (842)
T ss_pred cCCC-cc--cccccccccccCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechh
Confidence 0000 00 00111112223456779999999999999999999999999999999965 44569999999999999999
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHH
Q 002773 334 FGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADE 413 (882)
Q Consensus 334 l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~ 413 (882)
+..++.++|+.....++|..++..++.++++|.|+.|||+||||.||||+||++++++..+||.+.++.+++++.+++.+
T Consensus 300 ~~~l~~~~~s~~~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~ 379 (842)
T KOG1870|consen 300 FADLIKQLWSGNKSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAE 379 (842)
T ss_pred hhhHHHHhccCCccccCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHH
Confidence 99999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCcceeccceEEEEEEEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCC
Q 002773 414 YWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGK 493 (882)
Q Consensus 414 ~w~~~~~~n~Sii~dlF~G~~~s~i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~ 493 (882)
.|..|..++.|+|+|+|.|++++++.|+.|++++++||||.+|+||+|....+.+.+++++.++...|..+.+.++++++
T Consensus 380 ~~~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 459 (842)
T KOG1870|consen 380 VWDYHLKRNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGR 459 (842)
T ss_pred HHHhhhhhccceeeeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCC-eEEEEe-ehhhh-hhh
Q 002773 494 FEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDP-LVVFMH-QQLEE-QYI 570 (882)
Q Consensus 494 ~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~-~~~~~~-~~~~~-~~~ 570 (882)
+.++.+++.+.+++. ...+..++++.+.+++++..+...+..|...+.++.|+++....+.. ++.+.. .+... ...
T Consensus 460 ~~~l~~~l~~~~~~~-~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 538 (842)
T KOG1870|consen 460 IRDLLEYLSRTVGLL-SWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSK 538 (842)
T ss_pred HHHHHHHHHHHhccc-hhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeecccccccc
Confidence 999999999999999 89999999999999999997667788999999999999996333333 222222 22221 111
Q ss_pred cCCcCCCCcccCccEEEEec--cccChHHHHHHHHHHcCCcccCc-ccccCCCcCCCCchhhhhhccccccccC-CCCCC
Q 002773 571 HGKLTSCPNALGIPLVAKVS--YLAHGLDIRNLYLELLKPFCIPA-KDTFNNNVTAGSTAIEEVTRIVDNVPVT-GGVAT 646 (882)
Q Consensus 571 ~~~~~~~~~~fg~P~~~~~~--~~~~~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 646 (882)
....+.....||.|+++.+. ...+..++...+..+.+++.... .... .+.... ......+........ ..+..
T Consensus 539 ~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~-~~~~~~--~~~~~~e~~~~s~~~~~~~~~ 615 (842)
T KOG1870|consen 539 GIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVG-YGVDDQ--SLKEVSEQSAESSSSVSRDPS 615 (842)
T ss_pred CcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccc-cCCCcc--cccccccccccccccccCCCh
Confidence 22345667899999999993 56788899999988888776321 0000 000000 000000000000000 00000
Q ss_pred CCCCC----CCCCCCC--CceeeEEecCCCCccccccccCcccccCCCCCceEEEEEecchhhhhhcccccccccccccc
Q 002773 647 PSSVK----EVEPPSD--AELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKS 720 (882)
Q Consensus 647 ~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~ 720 (882)
..++. +.+.... ..+.+.-.... .+... ........++++|.+.....+........+++...
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~ 684 (842)
T KOG1870|consen 616 EDDNSDQDLSLECLSEESALRFFQSLESR---------NKSDS--EFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPR 684 (842)
T ss_pred hHhccccccchhhccCccccccccccccc---------ccccc--cccCCCceeecccChhhcccccccccccccccccc
Confidence 00000 0000000 00000000000 00000 01112223899999998887765555555565555
Q ss_pred CCCCCCCC-CCCCHHHHHHHhhCcCcCCCCCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeecccccccceeeec
Q 002773 721 GFLPKRPQ-ESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDF 799 (882)
Q Consensus 721 ~~~~~~~~-~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~F 799 (882)
+....... ..++|++||+.|+++|.|+.+++||||+|++|++|+|+++||+||+|||||||||+|.++++.|+++.|+|
T Consensus 685 ~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~f 764 (842)
T KOG1870|consen 685 GASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEF 764 (842)
T ss_pred ccccccCCCCcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccC
Confidence 44333322 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccccccCCccCceeeEEEEEEeeccCCCceEEEEEEc-CCCCEEEEcCCcceeeCccccCCCCcEEEEEEEe
Q 002773 800 PVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRV 878 (882)
Q Consensus 800 Pi~~LDls~~v~~~~~~~~~~YdL~aVi~H~G~l~gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~ 878 (882)
|+..|||++|+..++. .+|+||||+||||+|++||||||+|+ ++++||+|||++|+++++++|++++||+|||+|+
T Consensus 765 Pi~~ld~s~~~~~~~~---~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~ 841 (842)
T KOG1870|consen 765 PLGSLDLSEFVVNKEQ---VLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRL 841 (842)
T ss_pred CCcCCCcchhhccCcc---ceeeeeeeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEec
Confidence 9999999999998754 99999999999999999999999999 7899999999999999999999999999999997
Q ss_pred c
Q 002773 879 V 879 (882)
Q Consensus 879 ~ 879 (882)
+
T Consensus 842 ~ 842 (842)
T KOG1870|consen 842 D 842 (842)
T ss_pred C
Confidence 5
No 3
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-64 Score=513.28 Aligned_cols=333 Identities=35% Similarity=0.566 Sum_probs=275.7
Q ss_pred CCccccccCCCcccHHHHHHHHhCChHHHHHHHh-ccccccCCCCCCCCchHH-HHHHHHHHHHhcCCCCCCCChHHHHH
Q 002773 279 LGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLG-DYFREINHDNPLGMDGEI-ALAFGDLLRKLWAPGAAPVSPRTFKS 356 (882)
Q Consensus 279 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~-~~~~~~~~~n~~~~~~~l-~~~l~~L~~~l~~~~~~~i~p~~~~~ 356 (882)
.-+.||.|+|||||||++||||+.+..|...|+. .|...+|.++|.|..|.+ +..|..|...+-..+..+|+|+.|+.
T Consensus 69 ~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~~ 148 (415)
T COG5533 69 LPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFID 148 (415)
T ss_pred cCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHHH
Confidence 4679999999999999999999999999997774 578899999999999954 55666666677666678899999999
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccC-CCCccccCCCCCChH-----HHHHHHHHHhhccCCCcceecc
Q 002773 357 KLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKC-KPYAEAKDGDGRSDE-----DIADEYWQNHLARNDSIIVDLC 430 (882)
Q Consensus 357 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~-~~~~~~~~~~~~~~~-----~~a~~~w~~~~~~n~Sii~dlF 430 (882)
.++..++.|++.+|||||||+.|+||.||||+|.-.. +|..+++|...+..+ ....-.|+.|+..|.|+|.++|
T Consensus 149 i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f 228 (415)
T COG5533 149 ILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTF 228 (415)
T ss_pred HHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHH
Confidence 9999999999999999999999999999999997543 354555443222222 2334589999999999999999
Q ss_pred ceEEEEEEEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 002773 431 QGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVN 510 (882)
Q Consensus 431 ~G~~~s~i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~ 510 (882)
.|+++++++|..|++.|.|+.+|..|.+|+|..
T Consensus 229 ~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v----------------------------------------------- 261 (415)
T COG5533 229 FGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEV----------------------------------------------- 261 (415)
T ss_pred hhhhhhhhhhhhcCCceeEEeccceeeeccchh-----------------------------------------------
Confidence 999999999999999999999999999998731
Q ss_pred ceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEec
Q 002773 511 ETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVS 590 (882)
Q Consensus 511 ~~l~~~e~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~ 590 (882)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccChHHHHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCC
Q 002773 591 YLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKG 670 (882)
Q Consensus 591 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (882)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCC
Q 002773 671 IVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPED 750 (882)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d 750 (882)
..+.|.|||+.|+++|.|+++|
T Consensus 262 ----------------------------------------------------------~~~~l~eC~~~f~~~e~L~g~d 283 (415)
T COG5533 262 ----------------------------------------------------------VQLGLQECIDRFYEEEKLEGKD 283 (415)
T ss_pred ----------------------------------------------------------eeecHHHHHHHhhhHHhhcCcc
Confidence 0235899999999999999999
Q ss_pred CCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeecccccccceee----ecccCCCCccccccccCCccCceeeEEEE
Q 002773 751 MWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYV----DFPVDNLDLSTHVAHLNDKLSNRYMLYAV 826 (882)
Q Consensus 751 ~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V----~FPi~~LDls~~v~~~~~~~~~~YdL~aV 826 (882)
.|.||+|++++.++|++.|.++|++|||||+||.-.-..+.|||+.- +||.+-++- +-.-+.-+-.+..|.|+||
T Consensus 284 ~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~-~~f~~~~~~~P~~Y~L~gv 362 (415)
T COG5533 284 AWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVT-LLFNNGIGYIPRKYSLLGV 362 (415)
T ss_pred cccCchhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceeccc-ccccCCCCCCccceeEEEE
Confidence 99999999999999999999999999999999985544555666542 344322211 1111112225689999999
Q ss_pred EEeeccCCCceEEEEEEcCCCCEEEEcCCcceeeCc-cccCCCCcEEEEEEEe
Q 002773 827 SNHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPISQ-DKIKTSAAYVLFYRRV 878 (882)
Q Consensus 827 i~H~G~l~gGHYtAy~k~~~~~Wy~fnDs~V~~v~~-~~v~s~~AYvLFY~R~ 878 (882)
++|+|++.||||+++|+.. +.|+.||||.|++++- -+....+||||||+|.
T Consensus 363 ~Ch~G~L~gGHY~s~v~~~-~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 363 VCHNGTLNGGHYFSEVKRS-GTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred EeecceecCceeEEeeeec-CceEEechhheeeccceecccCCcceEEEEEec
Confidence 9999999999999999975 8999999999999983 4455679999999996
No 4
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-64 Score=553.37 Aligned_cols=305 Identities=35% Similarity=0.585 Sum_probs=271.2
Q ss_pred CCCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 002773 278 CLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSK 357 (882)
Q Consensus 278 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 357 (882)
..-.+||.|+|||||+|||||||.++|||.+||++..+..-.. ....++.++|+..+.........+++|..|...
T Consensus 105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~----~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~ 180 (545)
T KOG1865|consen 105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH----RAKFCMLCTFQAHITRALHNPGHPISPSQILSN 180 (545)
T ss_pred ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc----ccCeeeehHHHHHHHHHhcCCCCccChHHHHHh
Confidence 3456999999999999999999999999999999765543332 234678999999988887777779999999999
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEEE
Q 002773 358 LARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKST 437 (882)
Q Consensus 358 l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~ 437 (882)
|..++..|..|.|.||||||++++|.|+.-+-....+ . .+..+..++|.++|+|.++++
T Consensus 181 L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~-----~----------------~~~sq~ttlv~~iFGG~LrS~ 239 (545)
T KOG1865|consen 181 LRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQ-----V----------------DPRSQDTTLVHQIFGGYLRSQ 239 (545)
T ss_pred hhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCcc-----C----------------Ccccccceehhhhhccchhhc
Confidence 9999999999999999999999999999765311111 0 122455789999999999999
Q ss_pred EEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEE
Q 002773 438 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 517 (882)
Q Consensus 438 i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 517 (882)
++|..|+++|.+||++++|+|.|- .
T Consensus 240 vkC~~C~~vS~tyE~~~dltvei~-d------------------------------------------------------ 264 (545)
T KOG1865|consen 240 IKCLHCKGVSDTYEPYLDLTLEIQ-D------------------------------------------------------ 264 (545)
T ss_pred eecccCCCcccccccccceEEEec-c------------------------------------------------------
Confidence 999999999999999999998752 0
Q ss_pred EecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHH
Q 002773 518 IYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLD 597 (882)
Q Consensus 518 ~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 597 (882)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCcccccc
Q 002773 598 IRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKI 677 (882)
Q Consensus 598 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (882)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCC
Q 002773 678 VMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGC 757 (882)
Q Consensus 678 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~C 757 (882)
.-+|++||+.|+++|.|+++|+|.|.+|
T Consensus 265 ----------------------------------------------------~~sl~~AL~qFt~~E~L~gen~Y~C~~C 292 (545)
T KOG1865|consen 265 ----------------------------------------------------ASSLQQALEQFTKPEKLDGENAYHCGRC 292 (545)
T ss_pred ----------------------------------------------------chhHHHHHHHhhhHHhhCCccccccchh
Confidence 1279999999999999999999999999
Q ss_pred cCcceeEEEEEecccCCeEEEEEeceEeecccccccceeeecccCCCCccccccccCCccCceeeEEEEEEeec-cCCCc
Q 002773 758 KKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYG-SMGGG 836 (882)
Q Consensus 758 k~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVi~H~G-~l~gG 836 (882)
|+++.|.|++.|.++|.||+||||||+. .+..||...|.|| |.|||.|||..+++ .+.+|.||||++|.| ....|
T Consensus 293 k~~v~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fP-E~LDl~PyMS~~~e-~s~~Y~LYavlVH~g~~~~~G 368 (545)
T KOG1865|consen 293 KQKVPASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFP-ETLDLQPYMSQPNE-GSTVYKLYAVLVHLGTSCHSG 368 (545)
T ss_pred hhhCcccceeeeecCCceEEEeeehhcc--CcccccccccCCc-ccccccccccCCCC-CCceEEEEEEEEeccccccCC
Confidence 9999999999999999999999999997 6678999999999 79999999996655 889999999999999 89999
Q ss_pred eEEEEEEcCCCCEEEEcCCcceeeCccccCCCCcEEEEEEEe
Q 002773 837 HYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRV 878 (882)
Q Consensus 837 HYtAy~k~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~ 878 (882)
||++|||...|+||.|||+.|+.++.+.|++..||||||.|.
T Consensus 369 HY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 369 HYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred ceEEEEEcCCCceEEccCceeeeccccceecccceEEEEEee
Confidence 999999998899999999999999999999999999999996
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.1e-63 Score=540.80 Aligned_cols=287 Identities=31% Similarity=0.542 Sum_probs=251.1
Q ss_pred ccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCC--CCCChHHHHHHHhh
Q 002773 283 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGA--APVSPRTFKSKLAR 360 (882)
Q Consensus 283 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~--~~i~p~~~~~~l~~ 360 (882)
||.|+||||||||+||||+| ..++.+|+.||.+||.+.. .+++|..|+.+++.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHh
Confidence 99999999999999999987 4578899999999997643 56999999999999
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEEEEEc
Q 002773 361 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVC 440 (882)
Q Consensus 361 ~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~i~C 440 (882)
..|.|.+++||||||||.+|||.||+++++..++...+. ...+........++|.++|+|++.++++|
T Consensus 56 ~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~i~~~F~G~~~~~~~C 123 (300)
T cd02663 56 ENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANR------------KLNNNNNAEPQPTWVHEIFQGILTNETRC 123 (300)
T ss_pred hcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccc------------cccccccCCcCCCChhhhCceEEEeeEEe
Confidence 999999999999999999999999999987654332110 01122233456788999999999999999
Q ss_pred CCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEec
Q 002773 441 PVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYN 520 (882)
Q Consensus 441 ~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 520 (882)
..|++.+.++|+|++|+||||.
T Consensus 124 ~~C~~~s~~~e~f~~Lsl~i~~---------------------------------------------------------- 145 (300)
T cd02663 124 LTCETVSSRDETFLDLSIDVEQ---------------------------------------------------------- 145 (300)
T ss_pred CCCCCCccccceeEEeccCCCC----------------------------------------------------------
Confidence 9999999999999999998872
Q ss_pred ceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHHH
Q 002773 521 HQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRN 600 (882)
Q Consensus 521 ~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~ 600 (882)
T Consensus 146 -------------------------------------------------------------------------------- 145 (300)
T cd02663 146 -------------------------------------------------------------------------------- 145 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCccccccccC
Q 002773 601 LYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMN 680 (882)
Q Consensus 601 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (882)
T Consensus 146 -------------------------------------------------------------------------------- 145 (300)
T cd02663 146 -------------------------------------------------------------------------------- 145 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCCcCc
Q 002773 681 EPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKH 760 (882)
Q Consensus 681 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~ 760 (882)
..+|++||+.|+++|.|.+++.|+|++|+++
T Consensus 146 -------------------------------------------------~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~ 176 (300)
T cd02663 146 -------------------------------------------------NTSITSCLRQFSATETLCGRNKFYCDECCSL 176 (300)
T ss_pred -------------------------------------------------cCCHHHHHHHhhcccccCCCCcEECCCCCCc
Confidence 1268999999999999999999999999999
Q ss_pred ceeEEEEEecccCCeEEEEEeceEeecc--cccccceeeecccCCCCccccccccCCccCceeeEEEEEEeec-cCCCce
Q 002773 761 CQASKKLDLWRLPEILVIHLKRFSYSRF--SKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYG-SMGGGH 837 (882)
Q Consensus 761 ~~A~K~~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVi~H~G-~l~gGH 837 (882)
+.|+|++.|+++|+||+||||||.|+.. ...|+++.|.||+ .|||.++...... ....|+|+|||+|.| ++++||
T Consensus 177 ~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~~~-~~~~Y~L~~vi~H~G~~~~~GH 254 (300)
T cd02663 177 QEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPL-ELRLFNTTDDAEN-PDRLYELVAVVVHIGGGPNHGH 254 (300)
T ss_pred eeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCc-EEeccccccccCC-CCeEEEEEEEEEEecCCCCCCc
Confidence 9999999999999999999999999854 3679999999995 8999887543332 567999999999999 599999
Q ss_pred EEEEEEcCCCCEEEEcCCcceeeCccccC--------CCCcEEEEEE
Q 002773 838 YTAFVHHGGGQWYDFDDSHVYPISQDKIK--------TSAAYVLFYR 876 (882)
Q Consensus 838 YtAy~k~~~~~Wy~fnDs~V~~v~~~~v~--------s~~AYvLFY~ 876 (882)
||||+|. +++||+|||+.|+++++++|. +.+||||||+
T Consensus 255 Y~a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 255 YVSIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred eEEEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 9999998 789999999999999988885 6899999996
No 6
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.2e-60 Score=522.43 Aligned_cols=300 Identities=29% Similarity=0.471 Sum_probs=243.5
Q ss_pred CCCCCCCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCCCCCChHH
Q 002773 274 GEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRT 353 (882)
Q Consensus 274 ~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~ 353 (882)
.+....|++||.|+||||||||+||||+|+|+|++++.+.. +.......+. .+..++..++........|..
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~-------~~~~~~~~~q-~~~~~l~~~~~~~~~~~~P~~ 88 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLV-------SLISSVEQLQ-SSFLLNPEKYNDELANQAPRR 88 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhh-------cccCcHHHHH-HHHHHHHHHHhhcccccCHHH
Confidence 34456799999999999999999999999999999886421 1111112222 222344556655556678999
Q ss_pred HHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceE
Q 002773 354 FKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQ 433 (882)
Q Consensus 354 ~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~ 433 (882)
|+.++++.+|.|.++.||||||||.+|||.||+ +|.++|+|+
T Consensus 89 ~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------------------------~i~~~F~g~ 130 (332)
T cd02671 89 LLNALREVNPMYEGYLQHDAQEVLQCILGNIQE--------------------------------------LVEKDFQGQ 130 (332)
T ss_pred HHHHHHHhccccCCccccCHHHHHHHHHHHHHH--------------------------------------HHHhhhceE
Confidence 999999999999999999999999999999983 266799999
Q ss_pred EEEEEEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceE
Q 002773 434 YKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETL 513 (882)
Q Consensus 434 ~~s~i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l 513 (882)
++++++|..|++.+.++|+|++|+||||....... .
T Consensus 131 ~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~---------------------------------------~----- 166 (332)
T cd02671 131 LVLRTRCLECETFTERREDFQDISVPVQESELSKS---------------------------------------E----- 166 (332)
T ss_pred EEEEEEeCCCCCeeceecccEEEEEEeCCCccccc---------------------------------------c-----
Confidence 99999999999999999999999999985421000 0
Q ss_pred EEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEecccc
Q 002773 514 LVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLA 593 (882)
Q Consensus 514 ~~~e~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~ 593 (882)
..
T Consensus 167 ----------------~~-------------------------------------------------------------- 168 (332)
T cd02671 167 ----------------ES-------------------------------------------------------------- 168 (332)
T ss_pred ----------------cc--------------------------------------------------------------
Confidence 00
Q ss_pred ChHHHHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCcc
Q 002773 594 HGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVK 673 (882)
Q Consensus 594 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (882)
. .
T Consensus 169 -----------------------~-----~-------------------------------------------------- 170 (332)
T cd02671 169 -----------------------S-----E-------------------------------------------------- 170 (332)
T ss_pred -----------------------c-----c--------------------------------------------------
Confidence 0 0
Q ss_pred ccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCC
Q 002773 674 NSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWY 753 (882)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~ 753 (882)
+..+ | .....+|++||+.|+++|.|.++|.|+
T Consensus 171 ---~~~~----------------------------------~-----------~~~~~tL~~~L~~f~~~E~l~g~n~y~ 202 (332)
T cd02671 171 ---ISPD----------------------------------P-----------KTEMKTLKWAISQFASVERIVGEDKYF 202 (332)
T ss_pred ---cccc----------------------------------c-----------ccccCCHHHHHHHhCCcceecCCCCee
Confidence 0000 0 002458999999999999999999999
Q ss_pred CCCCcCcceeEEEEEecccCCeEEEEEeceEeec------ccccccceeeecccCCCCccccccccCCccCceeeEEEEE
Q 002773 754 CPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSR------FSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVS 827 (882)
Q Consensus 754 C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~------~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVi 827 (882)
|++|++.+.|+|++.|+++|+||+||||||.++. ....|+++.|.||+ .|||.+|.... ....|+|+|||
T Consensus 203 C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~---~~~~Y~L~~VI 278 (332)
T cd02671 203 CENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPL-KLSLEEWSTKP---KNDVYRLFAVV 278 (332)
T ss_pred CCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCcc-ccccccccCCC---CCCeEEEEEEE
Confidence 9999999999999999999999999999999864 24679999999996 89999886543 46899999999
Q ss_pred Eeec-cCCCceEEEEEEcCCCCEEEEcCCcceeeCccccC---------CCCcEEEEEE
Q 002773 828 NHYG-SMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIK---------TSAAYVLFYR 876 (882)
Q Consensus 828 ~H~G-~l~gGHYtAy~k~~~~~Wy~fnDs~V~~v~~~~v~---------s~~AYvLFY~ 876 (882)
+|.| ++++|||+||+| ||+|||+.|++++++++. +..||||||+
T Consensus 279 ~H~G~~~~~GHY~a~vr-----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 279 MHSGATISSGHYTAYVR-----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred EEcCCCCCCCeEEEEEE-----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 9999 689999999999 999999999999976663 4699999995
No 7
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.5e-60 Score=526.44 Aligned_cols=318 Identities=33% Similarity=0.602 Sum_probs=266.2
Q ss_pred cccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHhh
Q 002773 282 TGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLW-APGAAPVSPRTFKSKLAR 360 (882)
Q Consensus 282 ~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~-~~~~~~i~p~~~~~~l~~ 360 (882)
+||.|+||||||||+||||+|+|+|+++|++..+... . .......+++++|+.|+..|+ ......+.|..|+.++..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~-~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~ 78 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCT-C-LSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWK 78 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccc-c-ccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Confidence 5999999999999999999999999999986432210 0 011224579999999999994 445578999999999999
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEEEEEc
Q 002773 361 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVC 440 (882)
Q Consensus 361 ~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~i~C 440 (882)
..+.|.++.||||||||.+|||.||+++......+ .......++|.++|+|++.++++|
T Consensus 79 ~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~---------------------~~~~~~~~~i~~~F~g~~~~~~~C 137 (328)
T cd02660 79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA---------------------NDESHCNCIIHQTFSGSLQSSVTC 137 (328)
T ss_pred hchhhcccccccHHHHHHHHHHHHHHHhhcccccc---------------------cccccCCceeEEecccEEEeeeEc
Confidence 89999999999999999999999999987643321 001234588999999999999999
Q ss_pred CCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEec
Q 002773 441 PVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYN 520 (882)
Q Consensus 441 ~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 520 (882)
..|++.+.++|+|+.|+||||.......
T Consensus 138 ~~C~~~s~~~e~f~~lsl~i~~~~~~~~---------------------------------------------------- 165 (328)
T cd02660 138 QRCGGVSTTVDPFLDLSLDIPNKSTPSW---------------------------------------------------- 165 (328)
T ss_pred CCCCCccceecccceeeeeccccccccc----------------------------------------------------
Confidence 9999999999999999999985421000
Q ss_pred ceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHHH
Q 002773 521 HQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRN 600 (882)
Q Consensus 521 ~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~ 600 (882)
..
T Consensus 166 ---------------------------------------------------------~~--------------------- 167 (328)
T cd02660 166 ---------------------------------------------------------AL--------------------- 167 (328)
T ss_pred ---------------------------------------------------------cc---------------------
Confidence 00
Q ss_pred HHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCccccccccC
Q 002773 601 LYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMN 680 (882)
Q Consensus 601 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (882)
.
T Consensus 168 ----------------~--------------------------------------------------------------- 168 (328)
T cd02660 168 ----------------G--------------------------------------------------------------- 168 (328)
T ss_pred ----------------c---------------------------------------------------------------
Confidence 0
Q ss_pred cccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCCcCc
Q 002773 681 EPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKH 760 (882)
Q Consensus 681 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~ 760 (882)
........+|++||+.|+++|.+++.+ |.|++|+++
T Consensus 169 -------------------------------------------~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~ 204 (328)
T cd02660 169 -------------------------------------------ESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGST 204 (328)
T ss_pred -------------------------------------------ccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCc
Confidence 000003569999999999999998877 999999999
Q ss_pred ceeEEEEEecccCCeEEEEEeceEeec-ccccccceeeecccCCCCccccccc--------cCCccCceeeEEEEEEeec
Q 002773 761 CQASKKLDLWRLPEILVIHLKRFSYSR-FSKNKLETYVDFPVDNLDLSTHVAH--------LNDKLSNRYMLYAVSNHYG 831 (882)
Q Consensus 761 ~~A~K~~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls~~v~~--------~~~~~~~~YdL~aVi~H~G 831 (882)
+.|.|++.|.++|+||+||||||.++. +...|+++.|.||. .|||++|+.. ........|+|+|||+|.|
T Consensus 205 ~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G 283 (328)
T cd02660 205 QEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPL-ELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKG 283 (328)
T ss_pred cceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCC-EechhhhcccccccccccccCCCCceEEEEEEEEeec
Confidence 999999999999999999999999986 56689999999995 8999999985 1223678999999999999
Q ss_pred cCCCceEEEEEEcCCCCEEEEcCCcceeeCccccCCCCcEEEEEE
Q 002773 832 SMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYR 876 (882)
Q Consensus 832 ~l~gGHYtAy~k~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~ 876 (882)
+.++||||||+|..+++||+|||+.|+++++++|...+||||||.
T Consensus 284 ~~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 284 TLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred cCCCCcEEEEEECCCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 999999999999977999999999999999999999999999994
No 8
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.4e-60 Score=524.76 Aligned_cols=294 Identities=29% Similarity=0.482 Sum_probs=252.9
Q ss_pred ccccCCCcccHHHHHHHHhCChHHHHHHHhcccccc-CCCC----CCCCchHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 002773 283 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREI-NHDN----PLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSK 357 (882)
Q Consensus 283 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~-~~~n----~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 357 (882)
||.|+||||||||+||||+|+|+|++++++...... ...+ .......++.+|+.||.+||.+...+++|..|..+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 899999999999999999999999999985322111 0000 00123579999999999999988899999999998
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEEE
Q 002773 358 LARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKST 437 (882)
Q Consensus 358 l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~ 437 (882)
++ |..++||||||||.+|||.||+++..... ....++|.++|.|++.++
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~--------------------------~~~~~~i~~~F~G~~~~~ 129 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN--------------------------PDLKNIVQDLFRGEYSYV 129 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhccC--------------------------CcccchhhhhcceEEEEE
Confidence 84 67889999999999999999998864210 112467899999999999
Q ss_pred EEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEE
Q 002773 438 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 517 (882)
Q Consensus 438 i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 517 (882)
++|..|++.+.+.|+|+.|+|+||.
T Consensus 130 ~~C~~C~~~s~~~e~f~~l~l~i~~------------------------------------------------------- 154 (324)
T cd02668 130 TQCSKCGRESSLPSKFYELELQLKG------------------------------------------------------- 154 (324)
T ss_pred EEeCCCCCccccccccEEEEEEecc-------------------------------------------------------
Confidence 9999999999999999999999862
Q ss_pred EecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHH
Q 002773 518 IYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLD 597 (882)
Q Consensus 518 ~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 597 (882)
T Consensus 155 -------------------------------------------------------------------------------- 154 (324)
T cd02668 155 -------------------------------------------------------------------------------- 154 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCcccccc
Q 002773 598 IRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKI 677 (882)
Q Consensus 598 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (882)
T Consensus 155 -------------------------------------------------------------------------------- 154 (324)
T cd02668 155 -------------------------------------------------------------------------------- 154 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCC
Q 002773 678 VMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGC 757 (882)
Q Consensus 678 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~C 757 (882)
..+|++||+.|+.+|.|.+++.|+|++|
T Consensus 155 ----------------------------------------------------~~sl~~~L~~~~~~e~l~g~~~~~C~~C 182 (324)
T cd02668 155 ----------------------------------------------------HKTLEECIDEFLKEEQLTGDNQYFCESC 182 (324)
T ss_pred ----------------------------------------------------cCCHHHHHHHhhCceecCCCccccCCCC
Confidence 1268899999999999999999999999
Q ss_pred cCcceeEEEEEecccCCeEEEEEeceEeec--ccccccceeeecccCCCCccccccccCCccCceeeEEEEEEeec-cCC
Q 002773 758 KKHCQASKKLDLWRLPEILVIHLKRFSYSR--FSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYG-SMG 834 (882)
Q Consensus 758 k~~~~A~K~~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVi~H~G-~l~ 834 (882)
++++.|+|+..|.++|+||+||||||.|+. ..+.|+++.|.|| +.|||++|+..... .+..|+|+|||+|.| ++.
T Consensus 183 ~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~-~~~~Y~L~~vI~H~G~~~~ 260 (324)
T cd02668 183 NSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFP-EILDMGEYLAESDE-GSYVYELSGVLIHQGVSAY 260 (324)
T ss_pred CceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECC-CeEechhhcccccC-CCcEEEEEEEEEEcCCCCC
Confidence 999999999999999999999999999974 4578999999999 69999999875433 678999999999999 689
Q ss_pred CceEEEEEEc-CCCCEEEEcCCcceeeCcccc---------------------CCCCcEEEEEE
Q 002773 835 GGHYTAFVHH-GGGQWYDFDDSHVYPISQDKI---------------------KTSAAYVLFYR 876 (882)
Q Consensus 835 gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v---------------------~s~~AYvLFY~ 876 (882)
+|||+||+|. .+++||.|||+.|++++.+.| .+..|||||||
T Consensus 261 ~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 261 SGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred CEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 9999999998 458999999999999986654 36789999996
No 9
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-59 Score=537.02 Aligned_cols=305 Identities=29% Similarity=0.436 Sum_probs=254.0
Q ss_pred CCCCCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCC--CCCCChHH
Q 002773 276 AGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPG--AAPVSPRT 353 (882)
Q Consensus 276 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p~~ 353 (882)
...+|++||.|+||||||||+||||+|+|+||++|++..+..-. .....+++.+|+.+++++|++. ..+++|.+
T Consensus 114 ~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~----~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~ 189 (440)
T cd02669 114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENI----KDRKSELVKRLSELIRKIWNPRNFKGHVSPHE 189 (440)
T ss_pred CccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccc----cCCCcHHHHHHHHHHHHHhccccCCCccCHHH
Confidence 34679999999999999999999999999999999864322100 1234679999999999999876 47899999
Q ss_pred HHHHHhhhC-CCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccce
Q 002773 354 FKSKLARFA-PQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQG 432 (882)
Q Consensus 354 ~~~~l~~~~-~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G 432 (882)
|..++.... +.|.+++||||||||.+|||.||+++++.. +++.++|.++|+|
T Consensus 190 fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~---------------------------~~~~~ii~~~F~G 242 (440)
T cd02669 190 LLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK---------------------------KPNSSIIHDCFQG 242 (440)
T ss_pred HHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC---------------------------CCCCCcceeccCc
Confidence 999998765 579999999999999999999999987531 2457899999999
Q ss_pred EEEEEEEcCCCC---------------CeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHH
Q 002773 433 QYKSTLVCPVCK---------------KVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDL 497 (882)
Q Consensus 433 ~~~s~i~C~~C~---------------~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l 497 (882)
+++++++|..|. ..+.+++||++|+|+||.....
T Consensus 243 ~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~------------------------------- 291 (440)
T cd02669 243 KVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLF------------------------------- 291 (440)
T ss_pred eEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccc-------------------------------
Confidence 999999987654 3567899999999999953200
Q ss_pred HHHHHHHhcCCCCceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCC
Q 002773 498 IRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSC 577 (882)
Q Consensus 498 ~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (882)
.+ ..
T Consensus 292 ------------------------------~~----------~~------------------------------------ 295 (440)
T cd02669 292 ------------------------------KD----------GN------------------------------------ 295 (440)
T ss_pred ------------------------------cc----------cc------------------------------------
Confidence 00 00
Q ss_pred CcccCccEEEEeccccChHHHHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCC
Q 002773 578 PNALGIPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPS 657 (882)
Q Consensus 578 ~~~fg~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (882)
.
T Consensus 296 -------------------------------------------~------------------------------------ 296 (440)
T cd02669 296 -------------------------------------------E------------------------------------ 296 (440)
T ss_pred -------------------------------------------c------------------------------------
Confidence 0
Q ss_pred CCceeeEEecCCCCccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHH
Q 002773 658 DAELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCL 737 (882)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL 737 (882)
.. .+ ..++|++||
T Consensus 297 -----------------------~~------------------------------~l--------------~~~~l~e~L 309 (440)
T cd02669 297 -----------------------EN------------------------------II--------------PQVPLKQLL 309 (440)
T ss_pred -----------------------cc------------------------------cc--------------CcccHHHHH
Confidence 00 00 246899999
Q ss_pred HHhhCcCcCCCCCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeecccccccceeeecccCCCCccccccccC--C
Q 002773 738 EAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLN--D 815 (882)
Q Consensus 738 ~~f~~~E~L~~~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~--~ 815 (882)
+.| .|+.|+..+.|+|++.|++||+|||||||||.++...+.|+.+.|+||++.|||++|+.... .
T Consensus 310 ~ky------------~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~ 377 (440)
T cd02669 310 KKY------------DGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSL 377 (440)
T ss_pred Hhc------------CCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCcccccc
Confidence 764 57788888999999999999999999999999988778999999999987799999996422 2
Q ss_pred ccCceeeEEEEEEeeccC-CCceEEEEEEc-CCCCEEEEcCCcceeeCccccCCCCcEEEEEE
Q 002773 816 KLSNRYMLYAVSNHYGSM-GGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYR 876 (882)
Q Consensus 816 ~~~~~YdL~aVi~H~G~l-~gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~ 876 (882)
..+..|+|+|||+|.|++ ++|||+||+|+ .+++||.|||+.|+++++++|..++||||||+
T Consensus 378 ~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 378 NLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred CCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 256899999999999987 99999999998 57899999999999999999999999999996
No 10
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.6e-60 Score=511.31 Aligned_cols=252 Identities=42% Similarity=0.743 Sum_probs=229.3
Q ss_pred ccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCCCCCChHHHHHHHhhhC
Q 002773 283 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFA 362 (882)
Q Consensus 283 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~ 362 (882)
||.|+||||||||+||||+|+|+|++++++ +|..|+..+....
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~~~ 43 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCRKA 43 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHHhh
Confidence 999999999999999999999999999964 8889999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEEEEEcCC
Q 002773 363 PQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPV 442 (882)
Q Consensus 363 ~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~i~C~~ 442 (882)
|.|.+++||||||||.+|||.|+ ++|.++|.|++.++++|..
T Consensus 44 ~~f~~~~QqDA~Efl~~lld~l~--------------------------------------~~i~~~F~G~~~~~i~C~~ 85 (279)
T cd02667 44 PQFKGYQQQDSHELLRYLLDGLR--------------------------------------TFIDSIFGGELTSTIMCES 85 (279)
T ss_pred HhhcCCchhhHHHHHHHHHHHHH--------------------------------------HhhhhhcceEEEEEEEcCC
Confidence 99999999999999999999998 2377899999999999999
Q ss_pred CCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecce
Q 002773 443 CKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQ 522 (882)
Q Consensus 443 C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~ 522 (882)
|++.+.+.|+|+.|+||+|...
T Consensus 86 C~~~s~~~E~f~~L~Lp~~~~~---------------------------------------------------------- 107 (279)
T cd02667 86 CGTVSLVYEPFLDLSLPRSDEI---------------------------------------------------------- 107 (279)
T ss_pred CCCEeCccccceEEecCCCccc----------------------------------------------------------
Confidence 9999999999999988865210
Q ss_pred eEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHHHHH
Q 002773 523 IIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRNLY 602 (882)
Q Consensus 523 ~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~~~ 602 (882)
T Consensus 108 -------------------------------------------------------------------------------- 107 (279)
T cd02667 108 -------------------------------------------------------------------------------- 107 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCccccccccCcc
Q 002773 603 LELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMNEP 682 (882)
Q Consensus 603 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (882)
T Consensus 108 -------------------------------------------------------------------------------- 107 (279)
T cd02667 108 -------------------------------------------------------------------------------- 107 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCCcCcce
Q 002773 683 IAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQ 762 (882)
Q Consensus 683 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~ 762 (882)
...++|++||+.|+++|.|.+++.|.|++|++
T Consensus 108 ---------------------------------------------~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~--- 139 (279)
T cd02667 108 ---------------------------------------------KSECSIESCLKQFTEVEILEGNNKFACENCTK--- 139 (279)
T ss_pred ---------------------------------------------CCCCCHHHHHHhhcCeeEecCCCcccCCccCc---
Confidence 01358999999999999999999999999997
Q ss_pred eEEEEEecccCCeEEEEEeceEeecc-cccccceeeecccCCCCccccccccC----CccCceeeEEEEEEeeccCCCce
Q 002773 763 ASKKLDLWRLPEILVIHLKRFSYSRF-SKNKLETYVDFPVDNLDLSTHVAHLN----DKLSNRYMLYAVSNHYGSMGGGH 837 (882)
Q Consensus 763 A~K~~~i~~lP~iLiIhLKRF~~~~~-~~~Ki~~~V~FPi~~LDls~~v~~~~----~~~~~~YdL~aVi~H~G~l~gGH 837 (882)
|+|+..|+++|+||+||||||.++.. ...|+++.|.|| +.|||++|+.... ......|+|+|||+|.|+..+||
T Consensus 140 a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GH 218 (279)
T cd02667 140 AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGH 218 (279)
T ss_pred eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCC-CccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCE
Confidence 99999999999999999999999854 678999999999 6999999998621 23568999999999999889999
Q ss_pred EEEEEEcC----------------------CCCEEEEcCCcceeeCccccCCCCcEEEEEE
Q 002773 838 YTAFVHHG----------------------GGQWYDFDDSHVYPISQDKIKTSAAYVLFYR 876 (882)
Q Consensus 838 YtAy~k~~----------------------~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~ 876 (882)
|+||+|.. +++||+|||+.|+++++++|.+.+||||||+
T Consensus 219 Y~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 219 YVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred eEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 99999973 6899999999999999999999999999996
No 11
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.8e-59 Score=517.21 Aligned_cols=277 Identities=31% Similarity=0.522 Sum_probs=239.3
Q ss_pred ccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCCCCCChHH-HHHHHhhh
Q 002773 283 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRT-FKSKLARF 361 (882)
Q Consensus 283 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~-~~~~l~~~ 361 (882)
||.|+||||||||+||||+++|+|++++++...... .....+..+|+.|+..|......++.|.. |..++.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~-- 72 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR-- 72 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--
Confidence 899999999999999999999999999986432211 11245778899999888766666777776 665543
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEEEEEcC
Q 002773 362 APQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCP 441 (882)
Q Consensus 362 ~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~i~C~ 441 (882)
.+.|..+.||||||||.+|||.|+ ++|.++|.|++.++++|.
T Consensus 73 ~~~f~~~~QqDa~EFl~~lLd~l~--------------------------------------~~i~~~F~G~~~~~i~C~ 114 (327)
T cd02664 73 PPWFTPGSQQDCSEYLRYLLDRLH--------------------------------------TLIEKMFGGKLSTTIRCL 114 (327)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHH--------------------------------------HHHHhhCcEEeEeEEEcC
Confidence 578999999999999999999998 137789999999999999
Q ss_pred CCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecc
Q 002773 442 VCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNH 521 (882)
Q Consensus 442 ~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~ 521 (882)
.|++.+.++|+|..|+|+||
T Consensus 115 ~C~~~s~~~e~f~~l~L~i~------------------------------------------------------------ 134 (327)
T cd02664 115 NCNSTSARTERFRDLDLSFP------------------------------------------------------------ 134 (327)
T ss_pred CCCCEecccccceeeecCCC------------------------------------------------------------
Confidence 99999999999999998875
Q ss_pred eeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHHHH
Q 002773 522 QIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRNL 601 (882)
Q Consensus 522 ~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~~ 601 (882)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCccccccccCc
Q 002773 602 YLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMNE 681 (882)
Q Consensus 602 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (882)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCCcCcc
Q 002773 682 PIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHC 761 (882)
Q Consensus 682 ~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~ 761 (882)
+|++||+.|+++|.|++++.|+|++|++++
T Consensus 135 --------------------------------------------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~ 164 (327)
T cd02664 135 --------------------------------------------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQ 164 (327)
T ss_pred --------------------------------------------------CHHHHHHHhcCeeEccCCCceeCCccCCcc
Confidence 356899999999999999999999999999
Q ss_pred eeEEEEEecccCCeEEEEEeceEeec--ccccccceeeecccCCCCcccccccc------------------CCccCcee
Q 002773 762 QASKKLDLWRLPEILVIHLKRFSYSR--FSKNKLETYVDFPVDNLDLSTHVAHL------------------NDKLSNRY 821 (882)
Q Consensus 762 ~A~K~~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~------------------~~~~~~~Y 821 (882)
.|+|+..|.++|+||+||||||.|+. ..+.||++.|.|| ..|||.+|+... ....+..|
T Consensus 165 ~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp-~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 243 (327)
T cd02664 165 DAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSIN-EVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHY 243 (327)
T ss_pred ceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecC-CEEecCccccccccccccccccccccccccccCCCceE
Confidence 99999999999999999999999984 3467999999999 589999997421 11246799
Q ss_pred eEEEEEEeec-cCCCceEEEEEEcCC---------------------CCEEEEcCCcceeeCccccCC-------CCcEE
Q 002773 822 MLYAVSNHYG-SMGGGHYTAFVHHGG---------------------GQWYDFDDSHVYPISQDKIKT-------SAAYV 872 (882)
Q Consensus 822 dL~aVi~H~G-~l~gGHYtAy~k~~~---------------------~~Wy~fnDs~V~~v~~~~v~s-------~~AYv 872 (882)
+|+|||+|.| ++.+||||||+|... ++||.|||+.|+++++++|.+ ..|||
T Consensus 244 ~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYl 323 (327)
T cd02664 244 RLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYI 323 (327)
T ss_pred EEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEE
Confidence 9999999999 689999999999843 799999999999999999875 89999
Q ss_pred EEEE
Q 002773 873 LFYR 876 (882)
Q Consensus 873 LFY~ 876 (882)
||||
T Consensus 324 LfY~ 327 (327)
T cd02664 324 LFYE 327 (327)
T ss_pred EEeC
Confidence 9996
No 12
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-59 Score=539.58 Aligned_cols=342 Identities=45% Similarity=0.707 Sum_probs=292.9
Q ss_pred CCCCccccccCCCcccHHHHHHHHhCChHHHHHHHh-ccccccCCCCCCCCchHHHHHHHHHHHHhcCC-CCCCCChHHH
Q 002773 277 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLG-DYFREINHDNPLGMDGEIALAFGDLLRKLWAP-GAAPVSPRTF 354 (882)
Q Consensus 277 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~-~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~-~~~~i~p~~~ 354 (882)
...|.+||.|+|||||||++||||+.|+.|+..|++ .+...++.++.. ....+..++..++.++|.. ...++.|+.|
T Consensus 297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~-~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f 375 (653)
T KOG1868|consen 297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFF-GAEELESACAKLLQKLWHGHGQFSVLPRRF 375 (653)
T ss_pred cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcc-cchhHHHHHHHhhhhhccCCCceecCcHHH
Confidence 456999999999999999999999999999977774 577777744443 3456777888888777766 5678999999
Q ss_pred HHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccc-c-----CCCCCChHHHHHHHHHHhhccCCCccee
Q 002773 355 KSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEA-K-----DGDGRSDEDIADEYWQNHLARNDSIIVD 428 (882)
Q Consensus 355 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~-~-----~~~~~~~~~~a~~~w~~~~~~n~Sii~d 428 (882)
+..++++.+.|+++.|||||||+.+++|.||++++.....+-... . .....++...+...|..+....++.|.+
T Consensus 376 ~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~ 455 (653)
T KOG1868|consen 376 IRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGD 455 (653)
T ss_pred HHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHH
Confidence 999999999999999999999999999999999998654211111 1 1112234445566788888888888999
Q ss_pred ccceEEEEEEEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCC
Q 002773 429 LCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALG 508 (882)
Q Consensus 429 lF~G~~~s~i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~ 508 (882)
+|.||+++.++|..|++.|.+|++|++|+||||.....
T Consensus 456 lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~------------------------------------------ 493 (653)
T KOG1868|consen 456 LFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFA------------------------------------------ 493 (653)
T ss_pred HHHHHHHhheehhhcCCcceeeecceeeEEeccccccc------------------------------------------
Confidence 99999999999999999999999999999999943100
Q ss_pred CCceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEE
Q 002773 509 VNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAK 588 (882)
Q Consensus 509 ~~~~l~~~e~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~ 588 (882)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccChHHHHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecC
Q 002773 589 VSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDE 668 (882)
Q Consensus 589 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (882)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCC
Q 002773 669 KGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGP 748 (882)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~ 748 (882)
...++|++|+..||+.|.|++
T Consensus 494 -----------------------------------------------------------~~~~~L~~C~~~ft~~ekle~ 514 (653)
T KOG1868|consen 494 -----------------------------------------------------------GGKVSLEDCLSLFTKEEKLEG 514 (653)
T ss_pred -----------------------------------------------------------ccccchHhhhccccchhhccc
Confidence 013589999999999999999
Q ss_pred CCCCCCCCCcCcceeE--EEEEecccCCeEEEEEeceEeecccccccceeeecccCCCCccccccccCCccCceeeEEEE
Q 002773 749 EDMWYCPGCKKHCQAS--KKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAV 826 (882)
Q Consensus 749 ~d~w~C~~Ck~~~~A~--K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aV 826 (882)
+++|.||+|++.+.++ |++.||++|+|||||||||.+++....|....|+||+..+|+.+++....+ ....|+||||
T Consensus 515 ~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~-~~~~Y~L~aV 593 (653)
T KOG1868|consen 515 DEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGN-NPKSYRLYAV 593 (653)
T ss_pred ccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCC-CccceeeEEE
Confidence 9999999999999885 999999999999999999999987889999999999989999998877665 5666999999
Q ss_pred EEeeccCCCceEEEEEEc-CCCCEEEEcCCcceeeCccccCCCCcEEEEEEEecCC
Q 002773 827 SNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVEV 881 (882)
Q Consensus 827 i~H~G~l~gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~~~~ 881 (882)
+||+|++.||||||||+. ..+.|+.|||+.|+.+++.++.+++||||||.|...+
T Consensus 594 v~H~Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~ 649 (653)
T KOG1868|consen 594 VNHSGTLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIF 649 (653)
T ss_pred EeccCcccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCcc
Confidence 999999999999999976 5788999999999999999999999999999998643
No 13
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-57 Score=501.71 Aligned_cols=287 Identities=32% Similarity=0.463 Sum_probs=248.6
Q ss_pred ccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCCCCCChHHHHHHHhhhC
Q 002773 283 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFA 362 (882)
Q Consensus 283 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~ 362 (882)
||.|+||||||||+||||+|+|+|++++++.-... .+.......++.+|+.|+..|+.+. .+++|..|...++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~ 76 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPAR---RGANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAF 76 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccc---cccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHC
Confidence 89999999999999999999999999998632211 0122345789999999999998765 4899999999999999
Q ss_pred CCCC------CCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEE
Q 002773 363 PQFS------GFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKS 436 (882)
Q Consensus 363 ~~f~------~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s 436 (882)
+.|. +++||||||||.+|||.|+++++.. ..+.++|.++|+|++.+
T Consensus 77 ~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~----------------------------~~~~~~i~~~F~g~~~~ 128 (305)
T cd02657 77 PQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA----------------------------GSKGSFIDQLFGIELET 128 (305)
T ss_pred cCcccccCCCCccccCHHHHHHHHHHHHHHHhccc----------------------------CCCCcHHHHhhceEEEE
Confidence 9994 5699999999999999999998641 12457799999999999
Q ss_pred EEEcCCCC-CeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEE
Q 002773 437 TLVCPVCK-KVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLV 515 (882)
Q Consensus 437 ~i~C~~C~-~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 515 (882)
+++|..|+ +.+.++|+|+.|+|+||...
T Consensus 129 ~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~--------------------------------------------------- 157 (305)
T cd02657 129 KMKCTESPDEEEVSTESEYKLQCHISITT--------------------------------------------------- 157 (305)
T ss_pred EEEcCCCCCCCccccccceEEEeecCCCc---------------------------------------------------
Confidence 99999999 89999999999999998420
Q ss_pred EEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccCh
Q 002773 516 AEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHG 595 (882)
Q Consensus 516 ~e~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 595 (882)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCcccc
Q 002773 596 LDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNS 675 (882)
Q Consensus 596 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (882)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCC
Q 002773 676 KIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCP 755 (882)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~ 755 (882)
...+|++||+.++++|.. ..|+
T Consensus 158 -----------------------------------------------------~~~~l~~~L~~~~~~~~~-----~~~~ 179 (305)
T cd02657 158 -----------------------------------------------------EVNYLQDGLKKGLEEEIE-----KHSP 179 (305)
T ss_pred -----------------------------------------------------ccccHHHHHHHhhhhhhh-----hcCc
Confidence 012688999999987764 4799
Q ss_pred CCcCcceeEEEEEecccCCeEEEEEeceEeecc--cccccceeeecccCCCCccccccccCCccCceeeEEEEEEeec-c
Q 002773 756 GCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF--SKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYG-S 832 (882)
Q Consensus 756 ~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVi~H~G-~ 832 (882)
.|+....++|+..|.++|+||+||||||.|+.. ...|+++.|.||. .|||++|+. .+.+|+|+|||+|.| +
T Consensus 180 ~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~-~Ldl~~~~~-----~~~~Y~L~~vI~H~G~~ 253 (305)
T cd02657 180 TLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPF-ELDLYELCT-----PSGYYELVAVITHQGRS 253 (305)
T ss_pred ccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCc-eEecccccC-----CCCcEEEEEEEEecCCC
Confidence 999999999999999999999999999999753 4679999999995 899999987 457899999999999 6
Q ss_pred CCCceEEEEEEcCC-CCEEEEcCCcceeeCccccCC-------CCcEEEEEE
Q 002773 833 MGGGHYTAFVHHGG-GQWYDFDDSHVYPISQDKIKT-------SAAYVLFYR 876 (882)
Q Consensus 833 l~gGHYtAy~k~~~-~~Wy~fnDs~V~~v~~~~v~s-------~~AYvLFY~ 876 (882)
+.+|||+||+|..+ ++||.|||+.|+++++++|.. ..|||||||
T Consensus 254 ~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 254 ADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred CCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 99999999999954 899999999999999999964 699999996
No 14
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-57 Score=499.82 Aligned_cols=292 Identities=29% Similarity=0.471 Sum_probs=245.6
Q ss_pred ccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCC--------------CC
Q 002773 283 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGA--------------AP 348 (882)
Q Consensus 283 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~--------------~~ 348 (882)
||.|+||||||||+||||+|+|+|+++|++..... ..+......++.++|++|+..|++... .+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~--~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKF--PSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhcccc--CCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 99999999999999999999999999998622111 112223356799999999999986532 46
Q ss_pred CChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccee
Q 002773 349 VSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVD 428 (882)
Q Consensus 349 i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~d 428 (882)
+.|..|+.+++...|.|.++.||||||||.+|||.||+++... ..+.+.+
T Consensus 79 i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------------------------~~~~~~~ 128 (311)
T cd02658 79 IKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------------------------LGLNPND 128 (311)
T ss_pred cCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------------------------ccCCchh
Confidence 8999999999999999999999999999999999999987521 1234788
Q ss_pred ccceEEEEEEEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCC
Q 002773 429 LCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALG 508 (882)
Q Consensus 429 lF~G~~~s~i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~ 508 (882)
+|.|.++++++|..|++++.+.|+|..|+||||.....
T Consensus 129 ~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~------------------------------------------ 166 (311)
T cd02658 129 LFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEAT------------------------------------------ 166 (311)
T ss_pred heEEEeeEEEEcCCCCCEEEeecceeEEeeeccccccc------------------------------------------
Confidence 99999999999999999999999999999999853200
Q ss_pred CCceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEE
Q 002773 509 VNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAK 588 (882)
Q Consensus 509 ~~~~l~~~e~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~ 588 (882)
..+
T Consensus 167 ~~~----------------------------------------------------------------------------- 169 (311)
T cd02658 167 EKE----------------------------------------------------------------------------- 169 (311)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred eccccChHHHHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecC
Q 002773 589 VSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDE 668 (882)
Q Consensus 589 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (882)
+
T Consensus 170 ---------------------------------~---------------------------------------------- 170 (311)
T cd02658 170 ---------------------------------E---------------------------------------------- 170 (311)
T ss_pred ---------------------------------c----------------------------------------------
Confidence 0
Q ss_pred CCCccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCC
Q 002773 669 KGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGP 748 (882)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~ 748 (882)
........+|++||+.|+.+|.++
T Consensus 171 -------------------------------------------------------~~~~~~~~sl~~~L~~~~~~e~i~- 194 (311)
T cd02658 171 -------------------------------------------------------GELVYEPVPLEDCLKAYFAPETIE- 194 (311)
T ss_pred -------------------------------------------------------ccccCCCCCHHHHHHHHcCccccc-
Confidence 000003569999999999999996
Q ss_pred CCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEee-cccccccceeeecccCCCCccccccccCCccCceeeEEEEE
Q 002773 749 EDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYS-RFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVS 827 (882)
Q Consensus 749 ~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVi 827 (882)
++|+.|++++.|+|+..|.++|+||+||||||.++ .+...|++..|.||. .| .+..|+|+|||
T Consensus 195 ---~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~-~l------------~~~~Y~L~~vI 258 (311)
T cd02658 195 ---DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPE-EL------------GPGKYELIAFI 258 (311)
T ss_pred ---ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCC-cC------------CCCcEEEEEEE
Confidence 48999999999999999999999999999999995 556789999999994 55 34679999999
Q ss_pred Eeec-cCCCceEEEEEEcC---CCCEEEEcCCcceeeCccccCCCCcEEEEEE
Q 002773 828 NHYG-SMGGGHYTAFVHHG---GGQWYDFDDSHVYPISQDKIKTSAAYVLFYR 876 (882)
Q Consensus 828 ~H~G-~l~gGHYtAy~k~~---~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~ 876 (882)
+|.| ++++||||||+|.. +++||.|||+.|+++++.+|.+..||||||+
T Consensus 259 ~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 259 SHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred EccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 9999 59999999999985 3899999999999999999999999999996
No 15
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.2e-57 Score=495.08 Aligned_cols=302 Identities=37% Similarity=0.615 Sum_probs=262.9
Q ss_pred ccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCCCCCChHHHHHHHhh
Q 002773 281 LTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLAR 360 (882)
Q Consensus 281 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~ 360 (882)
++||.|+||||||||+||+|+|+|+|++++++..+.... .....++.++|+.++..++......+.|..|..++..
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~ 76 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDC----CNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQ 76 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhc----cCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHH
Confidence 589999999999999999999999999999853222111 1123578999999999998877889999999999999
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEEEEEc
Q 002773 361 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVC 440 (882)
Q Consensus 361 ~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~i~C 440 (882)
..+.|..+.||||+|||.+|||.||+++......... .....+..++|.++|+|+++++++|
T Consensus 77 ~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~F~g~~~~~~~C 138 (304)
T cd02661 77 ISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA------------------VDPSSQETTLVQQIFGGYLRSQVKC 138 (304)
T ss_pred HHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc------------------cCccccCCChhhhcCCcEEeeeEEe
Confidence 9999999999999999999999999887543321110 0112344678999999999999999
Q ss_pred CCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEec
Q 002773 441 PVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYN 520 (882)
Q Consensus 441 ~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 520 (882)
..|++.+.++|+|+.|+|+||..
T Consensus 139 ~~C~~~s~~~e~~~~l~l~i~~~--------------------------------------------------------- 161 (304)
T cd02661 139 LNCKHVSNTYDPFLDLSLDIKGA--------------------------------------------------------- 161 (304)
T ss_pred CCCCCCcCccccceeeeeecCCC---------------------------------------------------------
Confidence 99999999999999999998721
Q ss_pred ceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHHH
Q 002773 521 HQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRN 600 (882)
Q Consensus 521 ~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~ 600 (882)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCccccccccC
Q 002773 601 LYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMN 680 (882)
Q Consensus 601 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (882)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCCcCc
Q 002773 681 EPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKH 760 (882)
Q Consensus 681 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~ 760 (882)
.+|++||+.|+.+|.+++++.|.|++|++.
T Consensus 162 --------------------------------------------------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~ 191 (304)
T cd02661 162 --------------------------------------------------DSLEDALEQFTKPEQLDGENKYKCERCKKK 191 (304)
T ss_pred --------------------------------------------------CcHHHHHHHhcCceeeCCCCCeeCCCCCCc
Confidence 157899999999999999999999999999
Q ss_pred ceeEEEEEecccCCeEEEEEeceEeecccccccceeeecccCCCCccccccccCCccCceeeEEEEEEeecc-CCCceEE
Q 002773 761 CQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGS-MGGGHYT 839 (882)
Q Consensus 761 ~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVi~H~G~-l~gGHYt 839 (882)
+.++|+..|.++|+||+|||+||.++ ...|+++.|.|| +.|||.+|+..... ....|+|+|||+|.|. +++|||+
T Consensus 192 ~~~~~~~~i~~~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~-~~L~l~~~~~~~~~-~~~~Y~L~~vi~H~G~~~~~GHY~ 267 (304)
T cd02661 192 VKASKQLTIHRAPNVLTIHLKRFSNF--RGGKINKQISFP-ETLDLSPYMSQPND-GPLKYKLYAVLVHSGFSPHSGHYY 267 (304)
T ss_pred cceEEEEEEecCCcEEEEEEeccccC--CccccCCeEecC-CeechhhccccCCC-CCceeeEEEEEEECCCCCCCcCCE
Confidence 99999999999999999999999987 567999999999 58999999986443 6789999999999995 5999999
Q ss_pred EEEEcCCCCEEEEcCCcceeeCccccCCCCcEEEEE
Q 002773 840 AFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFY 875 (882)
Q Consensus 840 Ay~k~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY 875 (882)
||+|..+++||+|||+.|+++++++|.+..||||||
T Consensus 268 ~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y 303 (304)
T cd02661 268 CYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303 (304)
T ss_pred EEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEe
Confidence 999997789999999999999999999999999999
No 16
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-56 Score=498.45 Aligned_cols=298 Identities=29% Similarity=0.486 Sum_probs=253.5
Q ss_pred CccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCCCCCChHHHHHHHh
Q 002773 280 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLA 359 (882)
Q Consensus 280 g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~ 359 (882)
|++||.|+||||||||+||||+++|+|++++++.... ........+..+|+.|+..|..+....+.|..+..+..
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~-----~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT-----EDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRS 75 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc-----ccCcccccHHHHHHHHHHHHHhCCccccCcchhheecc
Confidence 7899999999999999999999999999999864211 11112356899999999999877666666666542222
Q ss_pred hhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEEEEE
Q 002773 360 RFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLV 439 (882)
Q Consensus 360 ~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~i~ 439 (882)
...+.|..++||||||||.+||+.|+++++.. ...++|.++|.|.+..+++
T Consensus 76 ~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------------------------~~~~~i~~lF~g~~~~~~~ 126 (334)
T cd02659 76 FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------------------------GQEGLIKNLFGGKLVNYII 126 (334)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHhccC-----------------------------cccchhhhhCceEEEeEEE
Confidence 23457889999999999999999999887531 1235689999999999999
Q ss_pred cCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEe
Q 002773 440 CPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIY 519 (882)
Q Consensus 440 C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~ 519 (882)
|..|++.+.+.++|..|+|++|.
T Consensus 127 C~~C~~~s~~~e~f~~l~l~i~~--------------------------------------------------------- 149 (334)
T cd02659 127 CKECPHESEREEYFLDLQVAVKG--------------------------------------------------------- 149 (334)
T ss_pred ecCCCceecccccceEEEEEcCC---------------------------------------------------------
Confidence 99999999999999999998862
Q ss_pred cceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHH
Q 002773 520 NHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIR 599 (882)
Q Consensus 520 ~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~ 599 (882)
T Consensus 150 -------------------------------------------------------------------------------- 149 (334)
T cd02659 150 -------------------------------------------------------------------------------- 149 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCcccccccc
Q 002773 600 NLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVM 679 (882)
Q Consensus 600 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (882)
T Consensus 150 -------------------------------------------------------------------------------- 149 (334)
T cd02659 150 -------------------------------------------------------------------------------- 149 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCCcC
Q 002773 680 NEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKK 759 (882)
Q Consensus 680 ~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~ 759 (882)
..+|++||+.|+.+|.+++++.|.|++|++
T Consensus 150 --------------------------------------------------~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~ 179 (334)
T cd02659 150 --------------------------------------------------KKNLEESLDAYVQGETLEGDNKYFCEKCGK 179 (334)
T ss_pred --------------------------------------------------CCCHHHHHHHhcCeeEecCCccEecCcCCC
Confidence 125889999999999999999999999999
Q ss_pred cceeEEEEEecccCCeEEEEEeceEeec--ccccccceeeecccCCCCccccccccC----------CccCceeeEEEEE
Q 002773 760 HCQASKKLDLWRLPEILVIHLKRFSYSR--FSKNKLETYVDFPVDNLDLSTHVAHLN----------DKLSNRYMLYAVS 827 (882)
Q Consensus 760 ~~~A~K~~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~----------~~~~~~YdL~aVi 827 (882)
.+.|.|+..|.++|+||+|||+||.++. ..+.|+++.|.|| ..|||++|+.... ......|+|+|||
T Consensus 180 ~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI 258 (334)
T cd02659 180 KVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFP-LELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVL 258 (334)
T ss_pred cccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCC-ceecCccccccccccccccccccCCCCeeEEEEEEE
Confidence 9999999999999999999999999973 4578999999999 5899999987532 2356789999999
Q ss_pred EeeccCCCceEEEEEEc-CCCCEEEEcCCcceeeCccccC----------------------CCCcEEEEEEEec
Q 002773 828 NHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIK----------------------TSAAYVLFYRRVV 879 (882)
Q Consensus 828 ~H~G~l~gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v~----------------------s~~AYvLFY~R~~ 879 (882)
+|.|...+|||+||+|. .+++||.|||+.|+++++++|. +..||||||+|++
T Consensus 259 ~H~G~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 259 VHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred EecCCCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 99999999999999998 5789999999999999988884 4579999999975
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-51 Score=435.68 Aligned_cols=123 Identities=34% Similarity=0.649 Sum_probs=112.6
Q ss_pred CCCHHHHHHHhhCcCcCCCCCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeec-ccccccceeeecccCCCCccc
Q 002773 730 SVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSR-FSKNKLETYVDFPVDNLDLST 808 (882)
Q Consensus 730 ~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls~ 808 (882)
..+|++||+.|+.+|.+++ |.|++| +..|.++|+||+||||||.++. +...|+++.|.||. .|
T Consensus 95 ~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~-~l---- 158 (240)
T cd02662 95 GTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPE-RL---- 158 (240)
T ss_pred CCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCC-cc----
Confidence 3589999999999999965 899999 6789999999999999999987 67789999999994 56
Q ss_pred cccccCCccCceeeEEEEEEeeccCCCceEEEEEEcC---------------------CCCEEEEcCCcceeeCcccc-C
Q 002773 809 HVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHG---------------------GGQWYDFDDSHVYPISQDKI-K 866 (882)
Q Consensus 809 ~v~~~~~~~~~~YdL~aVi~H~G~l~gGHYtAy~k~~---------------------~~~Wy~fnDs~V~~v~~~~v-~ 866 (882)
....|+|+|||+|.|+.++|||+||+|.. .++||+|||+.|+++++++| .
T Consensus 159 --------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~ 230 (240)
T cd02662 159 --------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLE 230 (240)
T ss_pred --------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhh
Confidence 34789999999999988999999999984 48999999999999999999 9
Q ss_pred CCCcEEEEEE
Q 002773 867 TSAAYVLFYR 876 (882)
Q Consensus 867 s~~AYvLFY~ 876 (882)
+++||||||+
T Consensus 231 ~~~aY~LfYe 240 (240)
T cd02662 231 QKSAYMLFYE 240 (240)
T ss_pred CCCEEEEEeC
Confidence 9999999996
No 18
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-50 Score=448.50 Aligned_cols=149 Identities=38% Similarity=0.610 Sum_probs=133.7
Q ss_pred CCCCHHHHHHHhhCcCcCCCCCCCCCCCCcC---------------------------cceeEEEEEecccCCeEEEEEe
Q 002773 729 ESVSLYKCLEAFLTEEPLGPEDMWYCPGCKK---------------------------HCQASKKLDLWRLPEILVIHLK 781 (882)
Q Consensus 729 ~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~---------------------------~~~A~K~~~i~~lP~iLiIhLK 781 (882)
.++|+++||..||+.|.|.++|+|.|++|.+ ...|.|++.|-.+||||+||||
T Consensus 676 ~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlK 755 (877)
T KOG1873|consen 676 EPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLK 755 (877)
T ss_pred CCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHh
Confidence 6899999999999999999999999999987 1237899999999999999999
Q ss_pred ceEee-cccccccceeeecccCCCCccccccccCC----ccCceeeEEEEEEeeccCCCceEEEEEEc------------
Q 002773 782 RFSYS-RFSKNKLETYVDFPVDNLDLSTHVAHLND----KLSNRYMLYAVSNHYGSMGGGHYTAFVHH------------ 844 (882)
Q Consensus 782 RF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~~~~----~~~~~YdL~aVi~H~G~l~gGHYtAy~k~------------ 844 (882)
||... +....|++.+|+|+ +-+||.+|+..+.. .....|+|+||+.|.|.|.+||||||+|.
T Consensus 756 rf~q~~~~~~~k~~~h~~f~-E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~ 834 (877)
T KOG1873|consen 756 RFFQDIRGRLSKLNKHVDFK-EFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNS 834 (877)
T ss_pred hhhhhhhchhhcccccchHH-HHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCcccc
Confidence 99987 44578999999999 89999999875421 13458999999999999999999999996
Q ss_pred ---------CCCCEEEEcCCcceeeCccccCCCCcEEEEEEEe
Q 002773 845 ---------GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRV 878 (882)
Q Consensus 845 ---------~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~ 878 (882)
..++||+..|++|+++++++|....||||||+|+
T Consensus 835 ~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 835 KDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred ccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 1478999999999999999999999999999996
No 19
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.8e-49 Score=414.81 Aligned_cols=147 Identities=49% Similarity=0.875 Sum_probs=136.8
Q ss_pred CCCHHHHHHHhhCcCcCCCCCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeecccccccceeeecccCCCCcccc
Q 002773 730 SVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTH 809 (882)
Q Consensus 730 ~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~ 809 (882)
..+|++||+.|+.+|.+++.+.|.|++|++++.+.++..|.++|+||+|||+||.++.....|+++.|.||.+.|||++|
T Consensus 83 ~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~ 162 (230)
T cd02674 83 KVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY 162 (230)
T ss_pred CCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEeccccccccccc
Confidence 35899999999999999999999999999999999999999999999999999999988889999999999888999999
Q ss_pred ccccCCccCceeeEEEEEEeeccCCCceEEEEEEcC-CCCEEEEcCCcceeeCccccCCCCcEEEEEE
Q 002773 810 VAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHG-GGQWYDFDDSHVYPISQDKIKTSAAYVLFYR 876 (882)
Q Consensus 810 v~~~~~~~~~~YdL~aVi~H~G~l~gGHYtAy~k~~-~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~ 876 (882)
+.........+|+|+|||.|.|..++|||+||+|.. +++||.|||+.|++++++++....||||||+
T Consensus 163 ~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 163 VDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred cCcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 755444477899999999999977999999999994 4899999999999999999999999999996
No 20
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.3e-46 Score=391.23 Aligned_cols=129 Identities=27% Similarity=0.468 Sum_probs=107.4
Q ss_pred CHHHHHHHhhCcCcCCCCCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeecccccccceeeecccCCCCcccccc
Q 002773 732 SLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVA 811 (882)
Q Consensus 732 sL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~ 811 (882)
+|++|++.|.++|.++ |.|++|+.. .|+|+..|+++|+||+||||||.+.. ++...+.. ..++|.+|+.
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~----~~~~~~~~--~~~~~~~~~~ 179 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI----ATSDYLKK--NEEIMKKYCG 179 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc----cccccccc--cccccccccC
Confidence 4677888888777763 799999975 89999999999999999999997643 23333333 3567888765
Q ss_pred ccCCccCceeeEEEEEEeec-cCCCceEEEEEEcC--CCCEEEEcCCcceeeCccccC---CCCcEEEEEE
Q 002773 812 HLNDKLSNRYMLYAVSNHYG-SMGGGHYTAFVHHG--GGQWYDFDDSHVYPISQDKIK---TSAAYVLFYR 876 (882)
Q Consensus 812 ~~~~~~~~~YdL~aVi~H~G-~l~gGHYtAy~k~~--~~~Wy~fnDs~V~~v~~~~v~---s~~AYvLFY~ 876 (882)
....|+|+|||+|.| ++++||||||+|.. +++||.|||+.|+++++++|. +.+||||||+
T Consensus 180 -----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 180 -----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred -----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 456799999999999 58999999999983 689999999999999999998 6799999996
No 21
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-45 Score=419.95 Aligned_cols=322 Identities=32% Similarity=0.609 Sum_probs=270.6
Q ss_pred CCCCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCC-chHHHHHHHHHHHHhcCCC-CCCCChHHH
Q 002773 277 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGM-DGEIALAFGDLLRKLWAPG-AAPVSPRTF 354 (882)
Q Consensus 277 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~-~~~l~~~l~~L~~~l~~~~-~~~i~p~~~ 354 (882)
..-|+.||.|+|||||||++||+|.|.+..+...+...+.. .+... ..++.+++.+++..+|++. ..+++|..+
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~----~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~ 232 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSK----EPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFEL 232 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhhccchhhccchhhhccc----CCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHH
Confidence 45699999999999999999999999999999988765552 12222 4689999999999999999 899999999
Q ss_pred HHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEE
Q 002773 355 KSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQY 434 (882)
Q Consensus 355 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~ 434 (882)
...+.+..|.|.||.|||||||+..++|.+|.+.+...+... ... |. +.-.+++...|.|++
T Consensus 233 l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~---~~~------------~~---~~c~~iv~~~F~G~L 294 (492)
T KOG1867|consen 233 LNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLI---ASQ------------SN---KQCPCIVHTIFSGTL 294 (492)
T ss_pred HHHHHHhCcccccccccchHHHHHHhcccccccccccccccc---ccc------------CC---cccccccceeeccee
Confidence 999999999999999999999999999999987611111100 000 00 022678999999999
Q ss_pred EEEEEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEE
Q 002773 435 KSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLL 514 (882)
Q Consensus 435 ~s~i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 514 (882)
.+.++|..|+..|.+++||++|+|.||....-
T Consensus 295 ~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~------------------------------------------------ 326 (492)
T KOG1867|consen 295 QSDVTCQTCGSKSTTYDPFMDISLDIPDQFTS------------------------------------------------ 326 (492)
T ss_pred ccceeehhhcceeeeccCccceeeecchhccC------------------------------------------------
Confidence 99999999999999999999999999853100
Q ss_pred EEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccC
Q 002773 515 VAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAH 594 (882)
Q Consensus 515 ~~e~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~ 594 (882)
+
T Consensus 327 ---------------------------------------------------------------------~---------- 327 (492)
T KOG1867|consen 327 ---------------------------------------------------------------------S---------- 327 (492)
T ss_pred ---------------------------------------------------------------------c----------
Confidence 0
Q ss_pred hHHHHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCccc
Q 002773 595 GLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKN 674 (882)
Q Consensus 595 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (882)
.
T Consensus 328 ----------------------~--------------------------------------------------------- 328 (492)
T KOG1867|consen 328 ----------------------S--------------------------------------------------------- 328 (492)
T ss_pred ----------------------c---------------------------------------------------------
Confidence 0
Q ss_pred cccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCC
Q 002773 675 SKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYC 754 (882)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C 754 (882)
. . ....++.+|++.|+..|.++......|
T Consensus 329 -------------~------------------------~--------------~~~~~~~~cl~~~~~~~~~~~~~~~~c 357 (492)
T KOG1867|consen 329 -------------V------------------------R--------------SPELTLLDCLDRFTRSEQLGKDSKYKC 357 (492)
T ss_pred -------------c------------------------c--------------cchhhhhhhhhhhhhhhhcCccccccc
Confidence 0 0 002368899999999999999999999
Q ss_pred CCCcCcceeEEEEEecccCCeEEEEEeceEeeccccc-ccceeeecccCCCCcccccccc---C-CccCceeeEEEEEEe
Q 002773 755 PGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKN-KLETYVDFPVDNLDLSTHVAHL---N-DKLSNRYMLYAVSNH 829 (882)
Q Consensus 755 ~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~-Ki~~~V~FPi~~LDls~~v~~~---~-~~~~~~YdL~aVi~H 829 (882)
..|+..+.++|++.|-++|.+|.+|||||.+...... |++.+|.|| ..|+|.+|+... . +..+..|+|+|||+|
T Consensus 358 ~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp-~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H 436 (492)
T KOG1867|consen 358 SSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFP-VLLNMKPYCSSEKLKSQDNPDHLYELRAVVVH 436 (492)
T ss_pred CCcccccccccccccccCCceeeeeeccccccccccccccCcccccc-hhhcCCccccccccccCCCCCceEEEEEEEEe
Confidence 9999999999999999999999999999999854433 999999999 599999999851 1 124789999999999
Q ss_pred eccCCCceEEEEEEcCCCCEEEEcCCcceeeCccccCCCCcEEEEEEEec
Q 002773 830 YGSMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVV 879 (882)
Q Consensus 830 ~G~l~gGHYtAy~k~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~~ 879 (882)
.|.+++||||||+|+. +.||+|||+.|+.+++++|.+..||+|||.++.
T Consensus 437 ~G~~~SGHY~aY~r~~-~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~~ 485 (492)
T KOG1867|consen 437 HGTVGSGHYVAYRRQS-GGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQEQ 485 (492)
T ss_pred ccCCCCCceEEEEEeC-CCcEEEcCeEEEEeeHHHhhhchhhheehhHHh
Confidence 9999999999999974 789999999999999999999999999998753
No 22
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3e-45 Score=379.08 Aligned_cols=126 Identities=26% Similarity=0.430 Sum_probs=110.6
Q ss_pred CHHHHHHHhhCcCcCCCCCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeecccccccceeeecccCCCCcccccc
Q 002773 732 SLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVA 811 (882)
Q Consensus 732 sL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~ 811 (882)
+|++||+.|+.+|.+++++.++ .+.++|+..|+++|+||+||||||.|+...+.|+.+.|.||+ .|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~-~l------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQ-II------- 159 (228)
T ss_pred CHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeC-cc-------
Confidence 7999999999999998755433 345778888999999999999999998877899999999995 45
Q ss_pred ccCCccCceeeEEEEEEeeccCCCceEEEEEEc-CCCCEEEEcCCcceeeCccccC--------CCCcEEEEEE
Q 002773 812 HLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIK--------TSAAYVLFYR 876 (882)
Q Consensus 812 ~~~~~~~~~YdL~aVi~H~G~l~gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v~--------s~~AYvLFY~ 876 (882)
....|+|+||++|.|++++|||+||+|. .+++||+|||+.|+++++++|. ..+||||||.
T Consensus 160 -----~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 160 -----QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred -----CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 2368999999999999999999999997 5789999999999999998886 3489999994
No 23
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.6e-44 Score=387.65 Aligned_cols=258 Identities=40% Similarity=0.732 Sum_probs=213.3
Q ss_pred ccccccCCCcccHHHHHHHHhCChHHHHHHHhc-cccccCCCCCCCCchHHHHHHHHHHHHhcCC--CCCCCChHHHHHH
Q 002773 281 LTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAP--GAAPVSPRTFKSK 357 (882)
Q Consensus 281 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~--~~~~i~p~~~~~~ 357 (882)
++||.|.||||||||+||||+++|+|++++++. .....+..++.....+++.+|+.|+..|+.. ....+.|..|..+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999864 2222344455566678999999999999988 6688999999999
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEEE
Q 002773 358 LARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKST 437 (882)
Q Consensus 358 l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~ 437 (882)
++...+.|..+.||||+|||..||+.|++++..... ...|........+++.++|.|++...
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~f~~~~~~~ 142 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFK------------------RKSWKNTNSSEDSLISDLFGGQFESS 142 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSS------------------HHHHHHHHCCEESHHHHHH-EEEEEE
T ss_pred ccccccccccccccchhhhhcccccccchhhccccc------------------cccccccccccccccccccccccccc
Confidence 999999999999999999999999999998865332 33456667777888888999998888
Q ss_pred EEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEE
Q 002773 438 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 517 (882)
Q Consensus 438 i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 517 (882)
+.|..|+..
T Consensus 143 ~~c~~c~~~----------------------------------------------------------------------- 151 (269)
T PF00443_consen 143 IKCSSCKNS----------------------------------------------------------------------- 151 (269)
T ss_dssp EEETTTTCE-----------------------------------------------------------------------
T ss_pred ccccccccc-----------------------------------------------------------------------
Confidence 888887764
Q ss_pred EecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHH
Q 002773 518 IYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLD 597 (882)
Q Consensus 518 ~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 597 (882)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCcccccc
Q 002773 598 IRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKI 677 (882)
Q Consensus 598 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (882)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCC
Q 002773 678 VMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGC 757 (882)
Q Consensus 678 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~C 757 (882)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcceeEEEEEecccCCeEEEEEeceEeecc--cccccceeeecccCCCCccccccccCC--ccCceeeEEEEEEeeccC
Q 002773 758 KKHCQASKKLDLWRLPEILVIHLKRFSYSRF--SKNKLETYVDFPVDNLDLSTHVAHLND--KLSNRYMLYAVSNHYGSM 833 (882)
Q Consensus 758 k~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~--~~~~~YdL~aVi~H~G~l 833 (882)
+..|+++|+||+|||+||.|+.. ...|+.+.|.||++.|||++|+..... .....|+|+|||+|+|..
T Consensus 152 --------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~ 223 (269)
T PF00443_consen 152 --------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSA 223 (269)
T ss_dssp --------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESST
T ss_pred --------ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccccc
Confidence 22466899999999999988743 578999999999779999999876542 136899999999999999
Q ss_pred CCceEEEEEEcC-CCCEEEEcCCcceeeCccccCC---CCcEEEEE
Q 002773 834 GGGHYTAFVHHG-GGQWYDFDDSHVYPISQDKIKT---SAAYVLFY 875 (882)
Q Consensus 834 ~gGHYtAy~k~~-~~~Wy~fnDs~V~~v~~~~v~s---~~AYvLFY 875 (882)
++|||+||+|.. +++||.|||+.|++++.++|.. ..||||||
T Consensus 224 ~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 224 DSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp TSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred ccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 999999999984 4579999999999999999988 99999999
No 24
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-44 Score=399.03 Aligned_cols=153 Identities=29% Similarity=0.491 Sum_probs=130.2
Q ss_pred CCCCCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCC---------
Q 002773 276 AGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGA--------- 346 (882)
Q Consensus 276 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~--------- 346 (882)
...+|++||.|+||+||||||+|+|+++|.|...++.. ..+-..-+......+.+++.+|+..|.++..
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~--~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~ 379 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQ--ERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSN 379 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhccc--cceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccc
Confidence 45679999999999999999999999999999888765 2222223445568899999999999987653
Q ss_pred -CCCChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCC-C
Q 002773 347 -APVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARND-S 424 (882)
Q Consensus 347 -~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~-S 424 (882)
..|+|..|+..+++-+|.|+..+||||||||.+||+.|.+-.. .. .
T Consensus 380 qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~r--------------------------------s~~~ 427 (763)
T KOG0944|consen 380 QNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSR--------------------------------SSLP 427 (763)
T ss_pred cCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccc--------------------------------ccCC
Confidence 3589999999999999999999999999999999999985321 11 2
Q ss_pred cceeccceEEEEEEEcCCCCCeeeeecCceeEEEeCCC
Q 002773 425 IIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPS 462 (882)
Q Consensus 425 ii~dlF~G~~~s~i~C~~C~~~s~~~e~f~~LsLplp~ 462 (882)
-+.++|.+.+..++.|..|.+++.++++-+.+.||||.
T Consensus 428 nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~ 465 (763)
T KOG0944|consen 428 NPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPM 465 (763)
T ss_pred CHHHHHHhhhhhhhhhhccccccccchhheeeEeeccc
Confidence 38899999999999999999999999999999999984
No 25
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.9e-44 Score=394.64 Aligned_cols=290 Identities=22% Similarity=0.313 Sum_probs=224.1
Q ss_pred ccccccCCCcccHHHHHHHHhCChHHHHHHHhcccccc--C----CCCCC----------CCchHHHHHHHHHHHHhcCC
Q 002773 281 LTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREI--N----HDNPL----------GMDGEIALAFGDLLRKLWAP 344 (882)
Q Consensus 281 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~--~----~~n~~----------~~~~~l~~~l~~L~~~l~~~ 344 (882)
++||.|+||||||||+||||+++|+||+++++.-.... . ..... .....++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999985321100 0 00000 01236899999999999988
Q ss_pred CCCCCChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCC
Q 002773 345 GAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDS 424 (882)
Q Consensus 345 ~~~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~S 424 (882)
...++.|..+...+.. .|||||||+..||+.||++++.....+.. .+. .......+
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~----~~~------------~~~~~~~~ 136 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAG----PDT------------EDDKEQSD 136 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccC----ccc------------ccccchhh
Confidence 8899999999886653 99999999999999999999754321110 000 00123457
Q ss_pred cceeccceEEEEEEEcCCCC---CeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHH
Q 002773 425 IIVDLCQGQYKSTLVCPVCK---KVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRAL 501 (882)
Q Consensus 425 ii~dlF~G~~~s~i~C~~C~---~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l 501 (882)
+|.++|.|+++++++|..|+ ..+.+.|+|++|+|+|+.+..
T Consensus 137 ~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~------------------------------------ 180 (343)
T cd02666 137 LIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGR------------------------------------ 180 (343)
T ss_pred hhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcccc------------------------------------
Confidence 89999999999999999997 889999999999999974310
Q ss_pred HHHhcCCCCceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCccc
Q 002773 502 SIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNAL 581 (882)
Q Consensus 502 ~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 581 (882)
+ +
T Consensus 181 ---------~-------------------------------~-------------------------------------- 182 (343)
T cd02666 181 ---------E-------------------------------I-------------------------------------- 182 (343)
T ss_pred ---------c-------------------------------c--------------------------------------
Confidence 0 0
Q ss_pred CccEEEEeccccChHHHHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCce
Q 002773 582 GIPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAEL 661 (882)
Q Consensus 582 g~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (882)
.|
T Consensus 183 -~~----------------------------------------------------------------------------- 184 (343)
T cd02666 183 -VV----------------------------------------------------------------------------- 184 (343)
T ss_pred -cc-----------------------------------------------------------------------------
Confidence 00
Q ss_pred eeEEecCCCCccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhh
Q 002773 662 QFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFL 741 (882)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~ 741 (882)
.....+|++||+.|+
T Consensus 185 -----------------------------------------------------------------~~~~~~L~d~L~~~~ 199 (343)
T cd02666 185 -----------------------------------------------------------------LLEPKDLYDALDRYF 199 (343)
T ss_pred -----------------------------------------------------------------cCCCCCHHHHHHHhc
Confidence 002458999999999
Q ss_pred CcCcCCCCCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeecccccccceeeecccCCCCccccccccC-------
Q 002773 742 TEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLN------- 814 (882)
Q Consensus 742 ~~E~L~~~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~------- 814 (882)
++|. |.++|+||.|||| +.+.+....+....-.|| ...|..+++....
T Consensus 200 ~~e~-----------------------~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~-~~~~~~~~l~~~~~~~~~~~ 254 (343)
T cd02666 200 DYDS-----------------------LTKLPQRSQVQAQ-LAQPLQRELISMDRYELP-SSIDDIDELIREAIQSESSL 254 (343)
T ss_pred Chhh-----------------------hccCCHHHHHHHh-hcccccchheeecccccc-chHHHHHHHHHHHHHHHHHH
Confidence 9887 8899999999999 555565566677777888 4677777654311
Q ss_pred --------------------CccCceeeEEEEEEeeccCCCceEEEEEEc-CCCCEEEEcCCcceeeCccccC------C
Q 002773 815 --------------------DKLSNRYMLYAVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIK------T 867 (882)
Q Consensus 815 --------------------~~~~~~YdL~aVi~H~G~l~gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v~------s 867 (882)
+.....|+|+||++|.|..++|||+||+|. .++.||+|||+.|++++.++|. +
T Consensus 255 ~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~ 334 (343)
T cd02666 255 VRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNT 334 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCC
Confidence 115788999999999998899999999998 4589999999999999988876 4
Q ss_pred CCcEEEEEE
Q 002773 868 SAAYVLFYR 876 (882)
Q Consensus 868 ~~AYvLFY~ 876 (882)
.+||+|||.
T Consensus 335 ~~pY~l~Yv 343 (343)
T cd02666 335 ATPYFLVYV 343 (343)
T ss_pred CCCEEEEeC
Confidence 699999994
No 26
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=401.92 Aligned_cols=305 Identities=28% Similarity=0.478 Sum_probs=262.3
Q ss_pred CCCCCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCC-CCchHHHHHHHHHHHHhcCCCCCCCChHHH
Q 002773 276 AGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPL-GMDGEIALAFGDLLRKLWAPGAAPVSPRTF 354 (882)
Q Consensus 276 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~-~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~ 354 (882)
..+-|+|||+|-|+|||||+++|-|.++|.+++-++..+.. .++|. .-...+.+.++.+|..|-.+.-.++.|+.|
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~---td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~ 166 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT---TDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGF 166 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc---ccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhH
Confidence 34569999999999999999999999999999987653332 22222 122348999999999998888889999999
Q ss_pred HHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEE
Q 002773 355 KSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQY 434 (882)
Q Consensus 355 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~ 434 (882)
-+.++.........+||||-||++.|||.+.|-|+..... -++...|+|.+
T Consensus 167 Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p-----------------------------~lf~n~f~G~y 217 (944)
T KOG1866|consen 167 WKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHP-----------------------------QLFSNTFGGSY 217 (944)
T ss_pred HHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCc-----------------------------HHHHHHhcCcc
Confidence 9999887778888999999999999999999999875432 34677899999
Q ss_pred EEEEEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEE
Q 002773 435 KSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLL 514 (882)
Q Consensus 435 ~s~i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 514 (882)
..+-.|..|-+.-...|+|+.|+|.|.
T Consensus 218 sdqKIC~~CpHRY~~eE~F~~l~l~i~----------------------------------------------------- 244 (944)
T KOG1866|consen 218 SDQKICQGCPHRYECEESFTTLNLDIR----------------------------------------------------- 244 (944)
T ss_pred chhhhhccCCcccCccccceeeeeecc-----------------------------------------------------
Confidence 999999999998889999999988753
Q ss_pred EEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccC
Q 002773 515 VAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAH 594 (882)
Q Consensus 515 ~~e~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~ 594 (882)
T Consensus 245 -------------------------------------------------------------------------------- 244 (944)
T KOG1866|consen 245 -------------------------------------------------------------------------------- 244 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCccc
Q 002773 595 GLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKN 674 (882)
Q Consensus 595 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (882)
T Consensus 245 -------------------------------------------------------------------------------- 244 (944)
T KOG1866|consen 245 -------------------------------------------------------------------------------- 244 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCC
Q 002773 675 SKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYC 754 (882)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C 754 (882)
.-+|++.|+.|.+.|.|+|.|+|+|
T Consensus 245 -------------------------------------------------------~~nLeesLeqfv~gevlEG~nAYhC 269 (944)
T KOG1866|consen 245 -------------------------------------------------------HQNLEESLEQFVKGEVLEGANAYHC 269 (944)
T ss_pred -------------------------------------------------------cchHHHHHHHHHHHHHhcCcchhhh
Confidence 0168899999999999999999999
Q ss_pred CCCcCcceeEEEEEecccCCeEEEEEeceEee--cccccccceeeecccCCCCccccccccC----------------Cc
Q 002773 755 PGCKKHCQASKKLDLWRLPEILVIHLKRFSYS--RFSKNKLETYVDFPVDNLDLSTHVAHLN----------------DK 816 (882)
Q Consensus 755 ~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~~----------------~~ 816 (882)
++|++++...|+..|.+||++|+||||||.|+ +....|-+..+.|| ..|||.||....- ..
T Consensus 270 eKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP-~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~ 348 (944)
T KOG1866|consen 270 EKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFP-RELDMEPYTVSGVAKLEGENVESGQQLEQSA 348 (944)
T ss_pred hhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccc-hhhcCCceeehhhhhhccccCCcCccccccc
Confidence 99999999999999999999999999999998 67778999999999 6999999987421 12
Q ss_pred cCceeeEEEEEEeeccCCCceEEEEEEc----CCCCEEEEcCCcceeeCccccCC--------------------CCcEE
Q 002773 817 LSNRYMLYAVSNHYGSMGGGHYTAFVHH----GGGQWYDFDDSHVYPISQDKIKT--------------------SAAYV 872 (882)
Q Consensus 817 ~~~~YdL~aVi~H~G~l~gGHYtAy~k~----~~~~Wy~fnDs~V~~v~~~~v~s--------------------~~AYv 872 (882)
++.+|+|+||+.|.|.+.+|||.+|++. +.++||+|||-.|++.+-.++.. -+|||
T Consensus 349 ~t~~YeLvGVlvHSGqAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYm 428 (944)
T KOG1866|consen 349 GTTKYELVGVLVHSGQASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYM 428 (944)
T ss_pred CcceeEEEEEEEecccccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHH
Confidence 6789999999999999999999999997 56899999999999999766541 28999
Q ss_pred EEEEEecCC
Q 002773 873 LFYRRVVEV 881 (882)
Q Consensus 873 LFY~R~~~~ 881 (882)
|||+|+++.
T Consensus 429 lFYer~~d~ 437 (944)
T KOG1866|consen 429 LFYERMDDI 437 (944)
T ss_pred HHHHHhcCC
Confidence 999998753
No 27
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-42 Score=384.48 Aligned_cols=295 Identities=28% Similarity=0.462 Sum_probs=248.1
Q ss_pred CCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCCCCCChHHHHHHH
Q 002773 279 LGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKL 358 (882)
Q Consensus 279 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l 358 (882)
.|++||.|.|.||||||+||+|+.+..||+.+. .+..++|.+ ...++.||+++|.+|.. ...+++..+|....
T Consensus 191 TGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy-----~ipTd~p~g-rdSValaLQr~Fynlq~-~~~PvdTteltrsf 263 (1089)
T COG5077 191 TGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVY-----GIPTDHPRG-RDSVALALQRLFYNLQT-GEEPVDTTELTRSF 263 (1089)
T ss_pred eeeeeeccCCceeeHHHHHHHHHHHHHHHHHhh-----cCCCCCCCc-cchHHHHHHHHHHHHhc-cCCCcchHHhhhhc
Confidence 499999999999999999999999999999874 455566654 36799999999999954 45789999998877
Q ss_pred hhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEEEE
Q 002773 359 ARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTL 438 (882)
Q Consensus 359 ~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~i 438 (882)
++. .+....|||.|||-..|.|.|+..++.... ...+..+|-|.+++.+
T Consensus 264 gWd--s~dsf~QHDiqEfnrVl~DnLEksmrgt~V-----------------------------Enaln~ifVgkmksyi 312 (1089)
T COG5077 264 GWD--SDDSFMQHDIQEFNRVLQDNLEKSMRGTVV-----------------------------ENALNGIFVGKMKSYI 312 (1089)
T ss_pred Ccc--cchHHHHHhHHHHHHHHHHHHHHhhcCChh-----------------------------hhHHhHHHHHHhhcee
Confidence 653 566789999999999999999975543211 0127789999999999
Q ss_pred EcCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEE
Q 002773 439 VCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEI 518 (882)
Q Consensus 439 ~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~ 518 (882)
.|-.-.+.|.+.|.|+++.|.+.
T Consensus 313 kCvnvnyEsarvedfwdiqlNvK--------------------------------------------------------- 335 (1089)
T COG5077 313 KCVNVNYESARVEDFWDIQLNVK--------------------------------------------------------- 335 (1089)
T ss_pred eEEEechhhhhHHHHHHHHhccc---------------------------------------------------------
Confidence 99887777777777766655431
Q ss_pred ecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHH
Q 002773 519 YNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDI 598 (882)
Q Consensus 519 ~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l 598 (882)
T Consensus 336 -------------------------------------------------------------------------------- 335 (1089)
T COG5077 336 -------------------------------------------------------------------------------- 335 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCccccccc
Q 002773 599 RNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIV 678 (882)
Q Consensus 599 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (882)
T Consensus 336 -------------------------------------------------------------------------------- 335 (1089)
T COG5077 336 -------------------------------------------------------------------------------- 335 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCCc
Q 002773 679 MNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCK 758 (882)
Q Consensus 679 ~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck 758 (882)
..-+|+|.++.+.+.|+|+|+|.|+|..-+
T Consensus 336 --------------------------------------------------~~knLqeSfr~yIqvE~l~GdN~Y~ae~~G 365 (1089)
T COG5077 336 --------------------------------------------------GMKNLQESFRRYIQVETLDGDNRYNAEKHG 365 (1089)
T ss_pred --------------------------------------------------chhhHHHHHHHhhhheeccCCccccccccc
Confidence 122689999999999999999999998765
Q ss_pred CcceeEEEEEecccCCeEEEEEeceEee--cccccccceeeecccCCCCccccccccC---CccCceeeEEEEEEeeccC
Q 002773 759 KHCQASKKLDLWRLPEILVIHLKRFSYS--RFSKNKLETYVDFPVDNLDLSTHVAHLN---DKLSNRYMLYAVSNHYGSM 833 (882)
Q Consensus 759 ~~~~A~K~~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~~---~~~~~~YdL~aVi~H~G~l 833 (882)
.|.|.|-.-+.++||||-++||||.|+ +.+.-||++.-+||+ .+||.||+.... ....+.|.||||.+|.|.+
T Consensus 366 -lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~-eiDl~pfld~da~ksen~d~vY~LygVlVHsGDl 443 (1089)
T COG5077 366 -LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPL-EIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDL 443 (1089)
T ss_pred -chhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcc-hhccccccCchhhhhcccCcEEEEEEEEEecccc
Confidence 679999999999999999999999997 778889999999995 999999998542 2245899999999999999
Q ss_pred CCceEEEEEEc-CCCCEEEEcCCcceeeCccccCC----------------------CCcEEEEEEEecC
Q 002773 834 GGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKT----------------------SAAYVLFYRRVVE 880 (882)
Q Consensus 834 ~gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v~s----------------------~~AYvLFY~R~~~ 880 (882)
.+|||.|+.|. .+|+||+|||.+|+++++.+|.. -+||||.|-|++.
T Consensus 444 ~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~ 513 (1089)
T COG5077 444 HEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSM 513 (1089)
T ss_pred CCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhH
Confidence 99999999997 67999999999999999888751 2799999999864
No 28
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.8e-40 Score=347.59 Aligned_cols=142 Identities=44% Similarity=0.763 Sum_probs=126.4
Q ss_pred CCHHHHHHHhhCcCcCCCCCCCCCCCCc--CcceeEEEEEecccCCeEEEEEeceEeec-ccccccceeeecccCCCCcc
Q 002773 731 VSLYKCLEAFLTEEPLGPEDMWYCPGCK--KHCQASKKLDLWRLPEILVIHLKRFSYSR-FSKNKLETYVDFPVDNLDLS 807 (882)
Q Consensus 731 isL~dcL~~f~~~E~L~~~d~w~C~~Ck--~~~~A~K~~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls 807 (882)
.+|++||+.++..|.+.+ ..|..|+ +.+.+.++..|.++|++|+|||+||.++. ....|++..|.|| +.|++.
T Consensus 99 ~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~-~~l~~~ 174 (255)
T cd02257 99 VSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFP-LELDLS 174 (255)
T ss_pred CcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCC-CcccCc
Confidence 479999999999998876 5788888 68899999999999999999999999986 7788999999999 699999
Q ss_pred ccccc-----cCCccCceeeEEEEEEeecc-CCCceEEEEEEcCC-CCEEEEcCCcceeeCcccc-----CCCCcEEEEE
Q 002773 808 THVAH-----LNDKLSNRYMLYAVSNHYGS-MGGGHYTAFVHHGG-GQWYDFDDSHVYPISQDKI-----KTSAAYVLFY 875 (882)
Q Consensus 808 ~~v~~-----~~~~~~~~YdL~aVi~H~G~-l~gGHYtAy~k~~~-~~Wy~fnDs~V~~v~~~~v-----~s~~AYvLFY 875 (882)
.++.. ........|+|+|||.|.|. .++|||+||+|+.. ++||.|||+.|++++.+++ ....||+|||
T Consensus 175 ~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y 254 (255)
T cd02257 175 PYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFY 254 (255)
T ss_pred cccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEEE
Confidence 98752 22336789999999999995 59999999999954 8999999999999999988 5789999999
Q ss_pred E
Q 002773 876 R 876 (882)
Q Consensus 876 ~ 876 (882)
+
T Consensus 255 ~ 255 (255)
T cd02257 255 E 255 (255)
T ss_pred C
Confidence 6
No 29
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-40 Score=356.08 Aligned_cols=136 Identities=24% Similarity=0.317 Sum_probs=116.9
Q ss_pred CCCHHHHHHHhhCcCcCCCCCCCCCCCCcCcceeEEEEEecccCC----eEEEEEeceEeec-------ccccccceeee
Q 002773 730 SVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPE----ILVIHLKRFSYSR-------FSKNKLETYVD 798 (882)
Q Consensus 730 ~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~K~~~i~~lP~----iLiIhLKRF~~~~-------~~~~Ki~~~V~ 798 (882)
.++|.+||+.|+.+|.. +.|+|++|++++.|+|++.|+++|+ ||+||||||.+.. ....|++..|.
T Consensus 116 ~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~ 192 (268)
T cd02672 116 ESTFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVS 192 (268)
T ss_pred CCCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeec
Confidence 35899999999999964 4589999999999999999999999 9999999999642 23458889999
Q ss_pred cccCCCCccccccccCCccCceeeEEEEEEeecc-CCCceEEEEEEcC-----CCCEEEEcCCcceeeCccccCCCCcEE
Q 002773 799 FPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGS-MGGGHYTAFVHHG-----GGQWYDFDDSHVYPISQDKIKTSAAYV 872 (882)
Q Consensus 799 FPi~~LDls~~v~~~~~~~~~~YdL~aVi~H~G~-l~gGHYtAy~k~~-----~~~Wy~fnDs~V~~v~~~~v~s~~AYv 872 (882)
||. .+|+..+...... ...+|+|+|||+|.|. .++|||+||+|.. .++||.|||..|+++++ .|||
T Consensus 193 f~~-~~~~~~~~~~~~~-~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYi 264 (268)
T cd02672 193 PKA-IDHDKLVKNRGQE-SIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYI 264 (268)
T ss_pred ccc-cccchhhhccCCC-CCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hhee
Confidence 994 7777666554333 5689999999999994 5999999999983 57899999999999998 8999
Q ss_pred EEEE
Q 002773 873 LFYR 876 (882)
Q Consensus 873 LFY~ 876 (882)
|||+
T Consensus 265 LfY~ 268 (268)
T cd02672 265 LLYQ 268 (268)
T ss_pred eecC
Confidence 9995
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-41 Score=368.63 Aligned_cols=147 Identities=35% Similarity=0.630 Sum_probs=135.1
Q ss_pred CHHHHHHHhhCcCcCCCCCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEee--cccccccceeeecccCCCCcccc
Q 002773 732 SLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYS--RFSKNKLETYVDFPVDNLDLSTH 809 (882)
Q Consensus 732 sL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~ 809 (882)
+++++|.+|.++|.|+|.|.|-|++||+++.|.|-+.|...|-+|.||||||.|+ ...|.|+++.|.|| ..|||..|
T Consensus 215 sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp-~~l~ln~~ 293 (1203)
T KOG4598|consen 215 SVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP-DVLDLNDY 293 (1203)
T ss_pred hHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc-ccccHHHh
Confidence 7899999999999999999999999999999999999999999999999999876 55788999999999 79999999
Q ss_pred ccccCC-----------------------------------------------------------------ccCceeeEE
Q 002773 810 VAHLND-----------------------------------------------------------------KLSNRYMLY 824 (882)
Q Consensus 810 v~~~~~-----------------------------------------------------------------~~~~~YdL~ 824 (882)
+-.... .++..|+|+
T Consensus 294 in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf 373 (1203)
T KOG4598|consen 294 VNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELF 373 (1203)
T ss_pred hhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhh
Confidence 864210 067899999
Q ss_pred EEEEeeccCCCceEEEEEEc-CCCCEEEEcCCcceeeCccccC-------------CCCcEEEEEEEec
Q 002773 825 AVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIK-------------TSAAYVLFYRRVV 879 (882)
Q Consensus 825 aVi~H~G~l~gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v~-------------s~~AYvLFY~R~~ 879 (882)
||..|.|+..||||.||+|+ +.+.||+|||.+|+-+++++|. +.+||||.|||++
T Consensus 374 ~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id 442 (1203)
T KOG4598|consen 374 SVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRID 442 (1203)
T ss_pred hhheecCCCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcC
Confidence 99999999999999999999 7789999999999999999885 4589999999986
No 31
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-38 Score=335.24 Aligned_cols=146 Identities=27% Similarity=0.400 Sum_probs=117.8
Q ss_pred ccccccCCCcccHHHHHHHHhCChHHHHHHHhccc-cccCCCCCCCCchHHHHHHHHHHHHhcCCCC----CCCChHHHH
Q 002773 281 LTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYF-REINHDNPLGMDGEIALAFGDLLRKLWAPGA----APVSPRTFK 355 (882)
Q Consensus 281 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~-~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~----~~i~p~~~~ 355 (882)
.+||.|+||+||+||++|.|++...+..-+....+ ...-..+|+ .++.+++.+|+..|..... .-++|..|+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~---~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk 379 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPL---ECLFCQLMKLLSKMKETPDNEYVNGISPLDFK 379 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCc---hhHHHHHHHHHhhccCCCCccccCCcChhhHH
Confidence 89999999999999999999999888766653222 222233443 7899999999999986552 458999999
Q ss_pred HHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEE
Q 002773 356 SKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYK 435 (882)
Q Consensus 356 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~ 435 (882)
..|++-+|.|...+||||+|||.|||+.|.+...... .+.|.++|.+.+.
T Consensus 380 ~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~~------------------------------~~~It~lf~Fe~e 429 (749)
T COG5207 380 MLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSYL------------------------------IPPITSLFEFEVE 429 (749)
T ss_pred HHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchhc------------------------------CCCcchhhhhhhc
Confidence 9999999999999999999999999999986433221 2458899999999
Q ss_pred EEEEcCCCCCeeeeecCceeEEEe
Q 002773 436 STLVCPVCKKVSVTFDPFMYLSLP 459 (882)
Q Consensus 436 s~i~C~~C~~~s~~~e~f~~LsLp 459 (882)
.++.|..|+.++..+++...+.++
T Consensus 430 ~rlsC~~C~~v~ySye~~~~i~i~ 453 (749)
T COG5207 430 RRLSCSGCMDVSYSYESMLMICIF 453 (749)
T ss_pred ceecccccccccccccceEEEEee
Confidence 999999999999887775544433
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-36 Score=371.41 Aligned_cols=298 Identities=29% Similarity=0.398 Sum_probs=252.1
Q ss_pred CCc-cccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 002773 279 LGL-TGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSK 357 (882)
Q Consensus 279 ~g~-~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 357 (882)
.|. +||.|+||||||||+||+|++++.||+.+.+.-. ..........+..+|+.||..|..+..+++.|..+...
T Consensus 167 tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~----~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~ 242 (1093)
T KOG1863|consen 167 TGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPP----FTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKS 242 (1093)
T ss_pred CCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCC----CCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhh
Confidence 365 9999999999999999999999999999965321 12222334569999999999998888889999999999
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEEE
Q 002773 358 LARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKST 437 (882)
Q Consensus 358 l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~ 437 (882)
++... ..+.+|||+|||+..|+|.|+..+..... ...|.++|.|.+++.
T Consensus 243 ~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~-----------------------------~~~l~~lf~g~~~~~ 291 (1093)
T KOG1863|consen 243 LGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKV-----------------------------ENTLQDLFTGKMKSV 291 (1093)
T ss_pred hhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhh-----------------------------hhhhhhhhcCCcceE
Confidence 98866 56779999999999999999987654321 234889999999999
Q ss_pred EEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEE
Q 002773 438 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 517 (882)
Q Consensus 438 i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 517 (882)
+.|..|+..+.+.|.|+++.|++-.
T Consensus 292 i~c~~~~~~s~r~e~f~d~ql~~~g------------------------------------------------------- 316 (1093)
T KOG1863|consen 292 IKCIDVDFESSRSESFLDLQLNGKG------------------------------------------------------- 316 (1093)
T ss_pred EEEEeeeeeccccccccCccccccc-------------------------------------------------------
Confidence 9999999999888888877765420
Q ss_pred EecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHH
Q 002773 518 IYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLD 597 (882)
Q Consensus 518 ~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 597 (882)
T Consensus 317 -------------------------------------------------------------------------------- 316 (1093)
T KOG1863|consen 317 -------------------------------------------------------------------------------- 316 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCcccccc
Q 002773 598 IRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKI 677 (882)
Q Consensus 598 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (882)
T Consensus 317 -------------------------------------------------------------------------------- 316 (1093)
T KOG1863|consen 317 -------------------------------------------------------------------------------- 316 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCC
Q 002773 678 VMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGC 757 (882)
Q Consensus 678 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~C 757 (882)
.-+|.++|+.|+..|.|.+++. ||..|
T Consensus 317 ----------------------------------------------------~~nl~~sf~~y~~~E~l~gdn~-~~~~~ 343 (1093)
T KOG1863|consen 317 ----------------------------------------------------VKNLEDSLHLYFEAEILLGDNK-YDAEC 343 (1093)
T ss_pred ----------------------------------------------------hhhHHHHHHHhhhHHHhcCCcc-ccccc
Confidence 1248899999999999999998 99999
Q ss_pred cCcceeEEEEEecccCCeEEEEEeceEee--cccccccceeeecccCCCCcccccccc--C-CccCceeeEEEEEEeecc
Q 002773 758 KKHCQASKKLDLWRLPEILVIHLKRFSYS--RFSKNKLETYVDFPVDNLDLSTHVAHL--N-DKLSNRYMLYAVSNHYGS 832 (882)
Q Consensus 758 k~~~~A~K~~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~--~-~~~~~~YdL~aVi~H~G~ 832 (882)
...+.|.|.+.+-+||+||.|||+||.|+ +....||.....|| ..|+|.+|+... . ....+.|+|+||..|.|.
T Consensus 344 ~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp-~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~ 422 (1093)
T KOG1863|consen 344 HGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFP-LIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGD 422 (1093)
T ss_pred cchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCc-cccccchhccccchhhhhccceeccchhhccccc
Confidence 99999999999999999999999999997 56677999999999 599999998741 1 113369999999999889
Q ss_pred CCCceEEEEEEc-CCCCEEEEcCCcceeeCccccCC----------------CCcEEEEEEEecC
Q 002773 833 MGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKT----------------SAAYVLFYRRVVE 880 (882)
Q Consensus 833 l~gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v~s----------------~~AYvLFY~R~~~ 880 (882)
..+|||++|++. ..++|++|||..|+.+++.++.. ..||+|+|-|.+.
T Consensus 423 ~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~ 487 (1093)
T KOG1863|consen 423 AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSC 487 (1093)
T ss_pred ccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCc
Confidence 999999999997 56899999999999999776641 1289999999764
No 33
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.2e-35 Score=305.28 Aligned_cols=123 Identities=29% Similarity=0.474 Sum_probs=107.6
Q ss_pred CCCHHHHHHHhhCcCcCCCCCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeecccccccceeeecccCCCCcccc
Q 002773 730 SVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTH 809 (882)
Q Consensus 730 ~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~ 809 (882)
.+||++||+.|++.|. |+++|+|||||||||.++.+...|+++.|.|| ..|||++|
T Consensus 79 ~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP-~~Ldl~~~ 134 (241)
T cd02670 79 GITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIP-DEIDIPDF 134 (241)
T ss_pred cCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCC-CcCCchhh
Confidence 5799999999999997 99999999999999999887778999999999 69999999
Q ss_pred ccccC---------------------CccCceeeEEEEEEeec-cCCCceEEEEEEcCC------------CCEEEEcCC
Q 002773 810 VAHLN---------------------DKLSNRYMLYAVSNHYG-SMGGGHYTAFVHHGG------------GQWYDFDDS 855 (882)
Q Consensus 810 v~~~~---------------------~~~~~~YdL~aVi~H~G-~l~gGHYtAy~k~~~------------~~Wy~fnDs 855 (882)
+.... ......|+|+|||+|.| ++.+||||||||+.. ++||.|||+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~ 214 (241)
T cd02670 135 VADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDM 214 (241)
T ss_pred cccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCc
Confidence 86531 12456899999999999 699999999999943 799999999
Q ss_pred cceeeCcc------ccCCCCcEEEEEE
Q 002773 856 HVYPISQD------KIKTSAAYVLFYR 876 (882)
Q Consensus 856 ~V~~v~~~------~v~s~~AYvLFY~ 876 (882)
.|+.+... .+.+.+|||||||
T Consensus 215 ~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 215 ADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred ccccccccccccchhcccCCceEEEeC
Confidence 98887532 5678999999996
No 34
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-34 Score=327.31 Aligned_cols=331 Identities=28% Similarity=0.434 Sum_probs=251.8
Q ss_pred CCCCccccccCCCcccHH--HHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCC--CCCCChH
Q 002773 277 GCLGLTGLQNLGNTCFMN--SALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPG--AAPVSPR 352 (882)
Q Consensus 277 ~~~g~~GL~NlGNTCYmN--SvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p~ 352 (882)
.....-|..|.+++|+.| ++.|.+..+-+++...+.... ......+....+...+..++....... ...+.|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~ 304 (587)
T KOG1864|consen 228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLT---SLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPT 304 (587)
T ss_pred ccccccCccccCccccccchhhHHHHHhhhhhcccccchhh---cccchhhhhHHHHHHhhhhccchhhhcccccccCcc
Confidence 345788999999999999 999999988888754332110 111111223344444444444332222 2568999
Q ss_pred HHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCcccc--CCCCCChHHHHHHHH--HHhhccCCCccee
Q 002773 353 TFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAK--DGDGRSDEDIADEYW--QNHLARNDSIIVD 428 (882)
Q Consensus 353 ~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~--~~~~~~~~~~a~~~w--~~~~~~n~Sii~d 428 (882)
.|...+.+....|..+.|||||||+.++++.++|.+.+.......... .++|..... +..+| ..|......++..
T Consensus 305 ~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~-~~~~~~~~~~~~~~~~~v~~ 383 (587)
T KOG1864|consen 305 RFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTS-AASWTNKGHHKSLRENWVSK 383 (587)
T ss_pred hhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccc-cccccccccccccchhHHHH
Confidence 999999999999999999999999999999999887765422211111 112211111 11111 1445556778999
Q ss_pred ccceEEEEEEEcCCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCC
Q 002773 429 LCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALG 508 (882)
Q Consensus 429 lF~G~~~s~i~C~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~ 508 (882)
+|.|++..+..|..|+.++.+-+.|.+++++++..
T Consensus 384 lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~d--------------------------------------------- 418 (587)
T KOG1864|consen 384 LFQGILTNETRCLSCETITSRDEGFLDLSVAVEID--------------------------------------------- 418 (587)
T ss_pred hhcCeeeeeeeeccccccccccccccccceecccc---------------------------------------------
Confidence 99999999999999999999999999988887621
Q ss_pred CCceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEE
Q 002773 509 VNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAK 588 (882)
Q Consensus 509 ~~~~l~~~e~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~ 588 (882)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccChHHHHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecC
Q 002773 589 VSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDE 668 (882)
Q Consensus 589 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (882)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCC
Q 002773 669 KGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGP 748 (882)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~ 748 (882)
+..++..||+.|.++|.|.+
T Consensus 419 ------------------------------------------------------------e~~si~~~l~~~~~~e~l~g 438 (587)
T KOG1864|consen 419 ------------------------------------------------------------ENTSITNLLKSFSSTETLSG 438 (587)
T ss_pred ------------------------------------------------------------ccccHHHHHHHhcchhhccC
Confidence 12368899999999999999
Q ss_pred CCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeecc--cccccceeeecccCCCCccccccccCCccCceeeEEEE
Q 002773 749 EDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF--SKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAV 826 (882)
Q Consensus 749 ~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aV 826 (882)
+++++|++|...|.|.|.+.+.++|.+|+||||||.|.+. ...|+...|.||+ .|.+...+..... +...|+|+||
T Consensus 439 ~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~pl-el~l~~~~~~~~~-~~~~Y~L~av 516 (587)
T KOG1864|consen 439 ENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPL-ELRLKDTLKDDNN-PDRKYDLVAV 516 (587)
T ss_pred CCcccccccCchhhHHHhccccCCcceeeeehhcccccccccccccccccccccc-ceeeccccccccC-ccceeeEEEE
Confidence 9999999999999999999999999999999999999853 2369999999996 7877665554332 2479999999
Q ss_pred EEeec-cCCCceEEEEEEcCCCCEEEEcCCcceeeCccccC---CCCcEEEEEEEe
Q 002773 827 SNHYG-SMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIK---TSAAYVLFYRRV 878 (882)
Q Consensus 827 i~H~G-~l~gGHYtAy~k~~~~~Wy~fnDs~V~~v~~~~v~---s~~AYvLFY~R~ 878 (882)
|+|.| ++..|||+||+|..+..|++|||..|..++++.|. ....|++||.+.
T Consensus 517 VvH~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~ 572 (587)
T KOG1864|consen 517 VVHLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYVQ 572 (587)
T ss_pred EEeccCCCCCcceEEEEeeCCCCceecccccccccCcchhhhccCCCccceeeeEE
Confidence 99999 99999999999985455999999999999988885 456777777654
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.97 E-value=4e-30 Score=281.32 Aligned_cols=284 Identities=26% Similarity=0.375 Sum_probs=233.0
Q ss_pred cccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHhh
Q 002773 282 TGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLW-APGAAPVSPRTFKSKLAR 360 (882)
Q Consensus 282 ~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~-~~~~~~i~p~~~~~~l~~ 360 (882)
.||.|.+++||+||+||+|+++|++++.++.+. . . ....+|+++|+-||.+|. .+....+.+..|.++++.
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~-----c--~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~ 72 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E-----C--PKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSW 72 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C-----C--CccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhc
Confidence 599999999999999999999999999998654 1 1 224789999999999998 777788999999999988
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEEEEEc
Q 002773 361 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVC 440 (882)
Q Consensus 361 ~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~i~C 440 (882)
......-+.|+|.|+|++|||+.|+.++............ .......+.|.++|+........|
T Consensus 73 ~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~~~f~~~~~~~~~c 136 (295)
T PF13423_consen 73 IPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSE----------------NSSSSPESSISQLFGTSFETTIRC 136 (295)
T ss_pred CHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccc----------------cccCCCcchHHHHhCcceeeeecc
Confidence 7655566679999999999999999998776543211000 011223466999999999999999
Q ss_pred CCCCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEec
Q 002773 441 PVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYN 520 (882)
Q Consensus 441 ~~C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 520 (882)
..|+..+++.++...+.|+.|...
T Consensus 137 ~~c~~~~~~~~~~~~~~l~yp~~~-------------------------------------------------------- 160 (295)
T PF13423_consen 137 TSCGHESVKESSTLVLDLPYPPSN-------------------------------------------------------- 160 (295)
T ss_pred cccCCeEEeecceeeeeccCCCCC--------------------------------------------------------
Confidence 999999988777666666554210
Q ss_pred ceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHHH
Q 002773 521 HQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRN 600 (882)
Q Consensus 521 ~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~ 600 (882)
T Consensus 161 -------------------------------------------------------------------------------- 160 (295)
T PF13423_consen 161 -------------------------------------------------------------------------------- 160 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEecCCCCccccccccC
Q 002773 601 LYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMN 680 (882)
Q Consensus 601 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (882)
T Consensus 161 -------------------------------------------------------------------------------- 160 (295)
T PF13423_consen 161 -------------------------------------------------------------------------------- 160 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcCCCCCCCCCCCCcCc
Q 002773 681 EPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKH 760 (882)
Q Consensus 681 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~ 760 (882)
..+++.++|+..+..|+... ..|++|++.
T Consensus 161 ------------------------------------------------~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~ 189 (295)
T PF13423_consen 161 ------------------------------------------------SNVTFSQVLEHSLNREQQTR---AWCEKCNKY 189 (295)
T ss_pred ------------------------------------------------ccchHHHHHHHHHhhccccc---ccccccccc
Confidence 13478889999988888765 799999999
Q ss_pred ceeEEEEEecccCCeEEEEEeceEeecccccccceeeecccCCCCccccccccC------CccCceeeEEEEEEeec-cC
Q 002773 761 CQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLN------DKLSNRYMLYAVSNHYG-SM 833 (882)
Q Consensus 761 ~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~------~~~~~~YdL~aVi~H~G-~l 833 (882)
+.+..+..|.++|+||.|.++|......+..|....+.+|. .+++..++.... .....+|+|.|+|+|.| +.
T Consensus 190 ~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~-~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~ 268 (295)
T PF13423_consen 190 QPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPP-SINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSI 268 (295)
T ss_pred cceeeeeeccCCCcEEEEEccCCCcccccccccCCceecce-eeeccccccccccccccCCCCceEEEEEEEEEEecCCC
Confidence 99999999999999999999999998667889999999995 799998886532 33678999999999999 69
Q ss_pred CCceEEEEEEcC---CCCEEEEcCCcc
Q 002773 834 GGGHYTAFVHHG---GGQWYDFDDSHV 857 (882)
Q Consensus 834 ~gGHYtAy~k~~---~~~Wy~fnDs~V 857 (882)
.+|||+||+|.. +.+||.|||-.|
T Consensus 269 ~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 269 ESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred CCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 999999999984 469999999765
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.6e-28 Score=259.02 Aligned_cols=122 Identities=28% Similarity=0.455 Sum_probs=101.6
Q ss_pred CcCcceeEEEEEecccCCeEEEEEeceEee-cccccccceeeecccCCCCccccccc-----cCCccCceeeEEEEEEee
Q 002773 757 CKKHCQASKKLDLWRLPEILVIHLKRFSYS-RFSKNKLETYVDFPVDNLDLSTHVAH-----LNDKLSNRYMLYAVSNHY 830 (882)
Q Consensus 757 Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~-----~~~~~~~~YdL~aVi~H~ 830 (882)
-+....|.+++.|.++|++|++|||||.|. .+...|+-+.++||. .|.++.-+.. +.......|+|.||+-|.
T Consensus 287 s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~-~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyht 365 (420)
T KOG1871|consen 287 SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPW-TLKISKNCFSQGLKIRILIATRPYKSLAVVYHT 365 (420)
T ss_pred CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccc-eeeechhhhccccchhhhccccccceEEEEEec
Confidence 455567889999999999999999999997 556679999999994 7776654432 222245679999999999
Q ss_pred c-cCCCceEEEEEEc-CCCCEEEEcCCcceeeCccccC----CCCcEEEEEEEec
Q 002773 831 G-SMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIK----TSAAYVLFYRRVV 879 (882)
Q Consensus 831 G-~l~gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v~----s~~AYvLFY~R~~ 879 (882)
| +..+|||++-+.. .-+.|+.+||..|..+..++|. +..||+|.|+|.+
T Consensus 366 gtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 366 GTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD 420 (420)
T ss_pred ccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence 9 8999999999988 5578999999999999999887 3589999999864
No 37
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.95 E-value=4e-28 Score=254.45 Aligned_cols=304 Identities=29% Similarity=0.470 Sum_probs=239.1
Q ss_pred CCCCCCCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCC--CCCCh
Q 002773 274 GEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGA--APVSP 351 (882)
Q Consensus 274 ~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~--~~i~p 351 (882)
.....+|.+||.|+-++=|.|++||+|+|.+|+|+||+.. .|+....+.+...|+.|++++|+++. ..++|
T Consensus 127 ~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~-------~n~~d~~~~lv~rl~~l~rklw~~r~fk~hvSp 199 (442)
T KOG2026|consen 127 GSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLE-------ENYFDNLTELVQRLGELIRKLWNPRNFKGHVSP 199 (442)
T ss_pred CCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccc-------ccccchhHHHHHHHHHHHHHhcChhhhcccCCH
Confidence 3456789999999999999999999999999999999742 23444568899999999999999875 78999
Q ss_pred HHHHHHHhhhC-CCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcceecc
Q 002773 352 RTFKSKLARFA-PQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLC 430 (882)
Q Consensus 352 ~~~~~~l~~~~-~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF 430 (882)
.+|.+++.... ..|..++|-|+-|||+|||+.||.+|+..++ ..|||++.|
T Consensus 200 he~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~----------------------------~~SIi~~~f 251 (442)
T KOG2026|consen 200 HEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKK----------------------------ASSIIHKSF 251 (442)
T ss_pred HHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCC----------------------------chhHhhHhh
Confidence 99999997655 4799999999999999999999999987542 258999999
Q ss_pred ceEEEEEEEcCC----CCCeeeeecCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhc
Q 002773 431 QGQYKSTLVCPV----CKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACA 506 (882)
Q Consensus 431 ~G~~~s~i~C~~----C~~~s~~~e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~ 506 (882)
+|.++....-.. -....+..-||++|+|.||....
T Consensus 252 qG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~pl----------------------------------------- 290 (442)
T KOG2026|consen 252 QGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPL----------------------------------------- 290 (442)
T ss_pred cceEEeeeeccccccccccceEEEEeeEEEEecCCCCCc-----------------------------------------
Confidence 999876554433 22344566799999999996421
Q ss_pred CCCCceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEE
Q 002773 507 LGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLV 586 (882)
Q Consensus 507 ~~~~~~l~~~e~~~~~~~~~~~~~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~ 586 (882)
|.|-
T Consensus 291 --------------------fkD~-------------------------------------------------------- 294 (442)
T KOG2026|consen 291 --------------------FKDV-------------------------------------------------------- 294 (442)
T ss_pred --------------------ccch--------------------------------------------------------
Confidence 0000
Q ss_pred EEeccccChHHHHHHHHHHcCCcccCcccccCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeeEEe
Q 002773 587 AKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLT 666 (882)
Q Consensus 587 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (882)
T Consensus 295 -------------------------------------------------------------------------------- 294 (442)
T KOG2026|consen 295 -------------------------------------------------------------------------------- 294 (442)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhhCcCcC
Q 002773 667 DEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPL 746 (882)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dcL~~f~~~E~L 746 (882)
....+ + ..|.|.+.|..|..+-.-
T Consensus 295 ------------~e~ni------------------------------i--------------PQV~l~~lL~Kf~g~t~~ 318 (442)
T KOG2026|consen 295 ------------MEKNI------------------------------I--------------PQVALFDLLKKFDGETVT 318 (442)
T ss_pred ------------hhhcc------------------------------c--------------ccchHHHHHHHhcCceee
Confidence 00000 0 235677778777643221
Q ss_pred CCCCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeecccccccceeeecccCCCCccccccc---cCCccCceeeE
Q 002773 747 GPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAH---LNDKLSNRYML 823 (882)
Q Consensus 747 ~~~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~---~~~~~~~~YdL 823 (882)
+- .....| +++.+.++|++||+|+|||.-+.++.+|..|.|.||+..+|+.+.... ... .-..|.|
T Consensus 319 e~---------~~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~ 387 (442)
T KOG2026|consen 319 EV---------VTPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNH-KVTQYSL 387 (442)
T ss_pred ee---------cchhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccC-ccccccc
Confidence 10 111234 889999999999999999999999999999999999878888776543 222 3378999
Q ss_pred EEEEEeeccCCCceEEEEEEc-CCCCEEEEcCCcceeeCccccCCCCcEEEEEEEe
Q 002773 824 YAVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRV 878 (882)
Q Consensus 824 ~aVi~H~G~l~gGHYtAy~k~-~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~ 878 (882)
.|=+.|- -.-|||...+++ ..++||..+|-+|++..++-|.-+++||=.|+|.
T Consensus 388 ~~N~i~~--~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 388 VANAIHE--DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred hhhhhcC--cccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 9888886 778999999998 7789999999999999999999999999888764
No 38
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.7e-27 Score=253.87 Aligned_cols=236 Identities=19% Similarity=0.205 Sum_probs=149.4
Q ss_pred EEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEecCcccccccccCCccc
Q 002773 165 KISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQIYGLSDSLKCREGRKDE 244 (882)
Q Consensus 165 ~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~~~g~w~~~~~~~~~~~~ 244 (882)
+++-.+|...++.++-.+-+++++.=+|= + +.-++.+..+ +..+.+.++..+++= |+-.... +
T Consensus 19 ~l~~d~t~~vlKaqlf~LTgV~PeRQKv~-v----KGg~a~dd~~-~~al~iKpn~~lmMm----Gt~e~~~-------e 81 (473)
T KOG1872|consen 19 TLSTDETPSVLKAQLFALTGVPPERQKVM-V----KGGLAKDDVD-WGALQIKPNETLMMM----GTAEAGL-------E 81 (473)
T ss_pred eccCCCchHHHHHHHHHhcCCCccceeEE-E----eccccccccc-ccccccCCCCEEEee----ccccccc-------c
Confidence 37888999999999998889988744422 1 1122333222 445566666665543 2100000 0
Q ss_pred ccccccCCCcCCCCcccccCCcccccCCCCCCCCCCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCC
Q 002773 245 MAVQHSNGSLTNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPL 324 (882)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~ 324 (882)
.++....... . . .. -.....-+=++||.|+|||||||+.+|||-.+|++..-+.. +......+..+
T Consensus 82 -~p~~~~~~~e-d--~--------~e-~~~~~~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~-~~~~~~~~~t~ 147 (473)
T KOG1872|consen 82 -PPSLPPTFIE-D--S--------AE-QFASAALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSL-YKRKRGRGDTW 147 (473)
T ss_pred -CcccCCcchh-h--h--------hH-HHHHhhccCCccccchhHHHHhhhhhhhhhcCccCcchhhc-cchhccCCchh
Confidence 0000000000 0 0 00 00001123457999999999999999999999999887753 22111222223
Q ss_pred CCchHHHHHHHHHHHHhcCCCCCCCChHHHHHHHhhhCCCCCC------CCCCCHHHHHHHHHHHHHHHhhhccCCCCcc
Q 002773 325 GMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSG------FNQHDSQELLAFLLDGLHEDLNRVKCKPYAE 398 (882)
Q Consensus 325 ~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~f~~------~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~ 398 (882)
.....+..+++.+|+.|... .++.|..+...+.+..|+|.- +.||||.|+...++-.+|+-+......+
T Consensus 148 ~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~--- 222 (473)
T KOG1872|consen 148 ERRRRISIETRTCFRPLCEK--GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP--- 222 (473)
T ss_pred hhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc---
Confidence 33567888999999999665 899999999999999999976 9999999999999999997654322111
Q ss_pred ccCCCCCChHHHHHHHHHHhhccCCCcceeccceEEEEEEEcCCCCCeeee--ecCceeEEE
Q 002773 399 AKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVT--FDPFMYLSL 458 (882)
Q Consensus 399 ~~~~~~~~~~~~a~~~w~~~~~~n~Sii~dlF~G~~~s~i~C~~C~~~s~~--~e~f~~LsL 458 (882)
++.+.+.++|.+++..+..|.+-...... .|.|..|+.
T Consensus 223 ----------------------~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c 262 (473)
T KOG1872|consen 223 ----------------------CLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKC 262 (473)
T ss_pred ----------------------chhHHHHHhhccccccceeeccCcccccccccccccccce
Confidence 34456788899999999999876544433 444444443
No 39
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=99.80 E-value=3.7e-20 Score=168.61 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=61.4
Q ss_pred CCEEEEEcchhHHHHHHhcCCCCcccccccccccCCCCCCCCCCCCCcccChhhccccccchhc-ccCcCCccCCCCCCC
Q 002773 30 DQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV-SLQNGENGEVGVSGR 108 (882)
Q Consensus 30 g~~~ylIs~~W~~~w~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pg~IdNs~L~~~~~~~~~~-~~~~~~l~~~l~e~~ 108 (882)
||.|||||++||++|+.||.++..+..... ....+||||||++|+......... ......||++|.++.
T Consensus 1 G~~~ylIs~~W~~~W~~~v~~~~~~~~~~~----------~~~~~pGpIdN~~L~~~~~~~~~~~~~~~~~Lk~~l~~~~ 70 (99)
T PF06337_consen 1 GDKWYLISSKWWRQWKSYVSYDNNDNESDP----------DSSPRPGPIDNSDLLDEDNSQLQFPPPENYRLKPNLQEGV 70 (99)
T ss_dssp T-EEEEEEHHHHHHHHHHHTTTTTSTTTTT-----------GGG---SB-GGGGECCTTT---------TEE-SS--CTT
T ss_pred CCEEEEECHHHHHHHHHHhCCCCccccccc----------ccCCCCCCEeCHHHhCCCCcccccchhhhhhccccccCCC
Confidence 899999999999999999997544331100 113459999999999752111000 001248999999999
Q ss_pred CEEEeCHHHHHHHHhcCCCCcccceeee
Q 002773 109 DYALVPGEMWLQALKCDTKVAAKNRKSF 136 (882)
Q Consensus 109 dy~~Vp~~~w~~l~~~yg~~~~i~R~Vi 136 (882)
||++||+++|++|.+|||+||+|.|.|+
T Consensus 71 Dy~~v~~~~W~~l~~~Ygggp~I~R~vi 98 (99)
T PF06337_consen 71 DYELVPEEVWDYLHSWYGGGPEIKRQVI 98 (99)
T ss_dssp TEEEEEHHHHHHHHHHH-T----EEEEE
T ss_pred CEEEECHHHHHHHHHHcCCCCcEEEEee
Confidence 9999999999999999999999999986
No 40
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=99.75 E-value=2.9e-18 Score=151.72 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=71.4
Q ss_pred CCCCEEEEEcchhHHHHHHhcCCCCcccccccccccCCCCCCCCCCCCCcccChhhccccccchhcccCcCCccCCCCCC
Q 002773 28 DNDQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSG 107 (882)
Q Consensus 28 ~~g~~~ylIs~~W~~~w~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~l~~~l~e~ 107 (882)
++||.||+|+.+||++|+.|+... ....||||||++|+.+. . ...|+.++.++
T Consensus 2 ~~g~~~yiIs~~W~~~~~~~~~~~-------------------~~~~pGpIdN~~l~~~~----~----~~~lk~~l~~~ 54 (86)
T smart00695 2 REGDTWYLISTRWYRQWADFVEGK-------------------DGKDPGPIDNSGILCSH----G----GPRLKEHLVEG 54 (86)
T ss_pred CCCCEEEEEeHHHHHHHHHHhCCC-------------------CCCCCCCCCcHHhcCCC----C----CcccccccccC
Confidence 589999999999999999999831 23569999999999641 0 23789999999
Q ss_pred CCEEEeCHHHHHHHHhcCCCCc-ccceeee
Q 002773 108 RDYALVPGEMWLQALKCDTKVA-AKNRKSF 136 (882)
Q Consensus 108 ~dy~~Vp~~~w~~l~~~yg~~~-~i~R~Vi 136 (882)
.||++||+++|++|.+|||++| +|.|.|+
T Consensus 55 ~dy~~V~~~vW~~l~~~YGggp~~i~R~~i 84 (86)
T smart00695 55 EDYVLIPEELWNKLVSWYGGGPGPIPRKVV 84 (86)
T ss_pred CCEEEeCHHHHHHHHHHHCCCCccceEEee
Confidence 9999999999999999999999 6999987
No 41
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=99.49 E-value=9.7e-14 Score=119.46 Aligned_cols=83 Identities=23% Similarity=0.265 Sum_probs=67.2
Q ss_pred EEEEEeec---CCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 151 LRLSVMRE---TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 151 l~l~~~~~---~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
|++|..++ ++..+.+||+.+||+.+.+++|++|+| .+++|||.+++.+.++.|.+.+.|+++|+|..||.|++|.+
T Consensus 2 ~kLC~~~~~~l~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~r 80 (88)
T PF14836_consen 2 LKLCVPSNVDLQSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEER 80 (88)
T ss_dssp EEEEETTE--CCEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE-
T ss_pred ceeccCCCcccccHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEee
Confidence 67888765 567899999999999999999999999 77899999999999999999999999999999999999999
Q ss_pred -ecCcccc
Q 002773 228 -IYGLSDS 234 (882)
Q Consensus 228 -~~g~w~~ 234 (882)
.||+||+
T Consensus 81 n~DGtWPr 88 (88)
T PF14836_consen 81 NEDGTWPR 88 (88)
T ss_dssp -TTS--TT
T ss_pred ccCCCCCC
Confidence 5999985
No 42
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.47 E-value=2.8e-13 Score=156.10 Aligned_cols=123 Identities=22% Similarity=0.306 Sum_probs=96.4
Q ss_pred CCCCCCcCcceeEEEEEecccCCeEEEEEeceEee--ccccc--ccceeeecccCCCCcccccc----------cc----
Q 002773 752 WYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYS--RFSKN--KLETYVDFPVDNLDLSTHVA----------HL---- 813 (882)
Q Consensus 752 w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~--~~~~~--Ki~~~V~FPi~~LDls~~v~----------~~---- 813 (882)
-.|+.|++++..+.+..+-.||++|.|...-+... .+++. |.-..|.+| +.+-|..-=. ..
T Consensus 702 ~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP-~~~~~~~~k~~~~~v~~~s~~~~~~~ 780 (1118)
T KOG1275|consen 702 AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLP-EWFHMIISKNKAQLVSTISDLDVSPL 780 (1118)
T ss_pred cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccc-hheeEEEecccceeeeeeccccCCCC
Confidence 37999999999999999999999999998877653 33333 556678888 4665543210 00
Q ss_pred ---CCccCceeeEEEEEEeec-cCCCceEEEEEEc---------CCCCEEEEcCCcceeeCccccCC-----CCcEEEEE
Q 002773 814 ---NDKLSNRYMLYAVSNHYG-SMGGGHYTAFVHH---------GGGQWYDFDDSHVYPISQDKIKT-----SAAYVLFY 875 (882)
Q Consensus 814 ---~~~~~~~YdL~aVi~H~G-~l~gGHYtAy~k~---------~~~~Wy~fnDs~V~~v~~~~v~s-----~~AYvLFY 875 (882)
+...-.+|+|-|+|.|.| +-..+|.++++|. .+.+||.|||-.|+++++++.+. +-+-||+|
T Consensus 781 ~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 781 PDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred ccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 011237899999999999 7799999999997 24699999999999999888763 57899999
No 43
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=98.04 E-value=3.4e-05 Score=80.13 Aligned_cols=143 Identities=22% Similarity=0.286 Sum_probs=88.8
Q ss_pred CceeEEEeCCCC---ceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCC--CceEEEEEEecceeEEc
Q 002773 452 PFMYLSLPLPST---TVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGV--NETLLVAEIYNHQIIRY 526 (882)
Q Consensus 452 ~f~~LsLplp~~---~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~--~~~l~~~e~~~~~~~~~ 526 (882)
++.+--|+||.. +.+.++|+++..... .--.+.+.+||++++.||++++.+.+++.. ...+.+.++++++|+++
T Consensus 2 ~l~YevL~i~l~ElE~kk~~kv~w~~~~~~-~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~ 80 (213)
T PF14533_consen 2 TLYYEVLDIPLKELENKKQFKVTWLNDGLK-EEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKI 80 (213)
T ss_dssp EEEEEE-SS-HHHHHSB--EEEEEE-TTS--EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEE
T ss_pred ceEEEecCCCHHHHhCceEEEEEEECCCCc-ceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEee
Confidence 456666777764 566777777754322 224688999999999999999999998865 35899999999999999
Q ss_pred ccCCcccccccCCCCcEEEEEecCCCC-------CCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHH
Q 002773 527 LEEPADSISLIRDDDQLVAYRLRKEND-------KDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIR 599 (882)
Q Consensus 527 ~~~~~~~l~~i~~~d~i~~ye~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~ 599 (882)
+. ++..+..|.+...+.+-++|.... ....+++.|-..+ ....||+||++.+...-+-.++.
T Consensus 81 ~~-~d~~i~~l~~~~~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~----------~~~~hGiPF~f~v~~gE~f~~tK 149 (213)
T PF14533_consen 81 LS-EDEPISSLNDYITLRIEEIPEEELNLDDESEGEKLIPVFHFHKD----------PSRTHGIPFLFVVKPGETFSDTK 149 (213)
T ss_dssp E--TTSBGGGS--TTEEEEEE--GGGSS--TT--TEEEEEEEEESSS----------TT-EEEEEEEEEEETT--HHHHH
T ss_pred cC-CCCchhhccCcceeeeecCChHHhhcccccccceEEEEEEEecC----------ccccCCCCEEEEeeCCCcHHHHH
Confidence 98 777888886666677778887532 2355777775322 22789999999997777777777
Q ss_pred HHHHHHc
Q 002773 600 NLYLELL 606 (882)
Q Consensus 600 ~~~~~~l 606 (882)
+.+.+++
T Consensus 150 ~Rl~~rl 156 (213)
T PF14533_consen 150 ERLQKRL 156 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777666
No 44
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0023 Score=75.62 Aligned_cols=105 Identities=21% Similarity=0.229 Sum_probs=58.6
Q ss_pred cccCCCcccHHHHHHHHhCChHHHHHHHhc---cc-------cccCCCCCCCCchHHHHHHHHHHHHhcCCC-CCCCChH
Q 002773 284 LQNLGNTCFMNSALQCLVHTPKLVDYFLGD---YF-------REINHDNPLGMDGEIALAFGDLLRKLWAPG-AAPVSPR 352 (882)
Q Consensus 284 L~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~---~~-------~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~-~~~i~p~ 352 (882)
|.|.|||||.||+||||.++|+|+--+... .. ...+.....-.......+....+...-+.. .-..+-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 999999999999999999999999776531 11 111111111111122222222222220111 1112222
Q ss_pred HHHHHH---hhhCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q 002773 353 TFKSKL---ARFAPQFSGFNQHDSQELLAFLLDGLHEDL 388 (882)
Q Consensus 353 ~~~~~l---~~~~~~f~~~~QqDA~Efl~~LLd~L~eel 388 (882)
.+...+ .+....|.-..|+||++|+.-|+-.+..-+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 333333 334446888899999999998887665433
No 45
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=96.34 E-value=0.003 Score=65.23 Aligned_cols=81 Identities=17% Similarity=0.381 Sum_probs=59.2
Q ss_pred CCCCCcCcceeEEEEEecccCCeEEEEEeceEeecccccccceeeecccCCCCccccccccCCccCceeeEEEEEEeecc
Q 002773 753 YCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGS 832 (882)
Q Consensus 753 ~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVi~H~G~ 832 (882)
-|.+|+.+ ...++|-+.++|+|+.+|+- .+-..+.-..-+|-+ +...|..-+||--.-.
T Consensus 172 pCn~C~~k-sQ~rkMvlekv~~vfmLHFV-----eGLP~ndl~~ysF~f---------------eg~~Y~Vt~VIQY~~~ 230 (275)
T PF15499_consen 172 PCNSCNSK-SQRRKMVLEKVPPVFMLHFV-----EGLPHNDLQHYSFHF---------------EGCLYQVTSVIQYQAN 230 (275)
T ss_pred CCcccCCh-HHhHhhhhhcCchhhhhhhh-----ccCCccCCCccceee---------------cCeeEEEEEEEEEecc
Confidence 69999977 44678999999999999962 122111111122221 5578999999976644
Q ss_pred CCCceEEEEEEcCCCCEEEEcCCc
Q 002773 833 MGGGHYTAFVHHGGGQWYDFDDSH 856 (882)
Q Consensus 833 l~gGHYtAy~k~~~~~Wy~fnDs~ 856 (882)
.-|+++++++.+|.|..+||-.
T Consensus 231 --~~HFvtWi~~~dGsWLecDDLk 252 (275)
T PF15499_consen 231 --LNHFVTWIRDSDGSWLECDDLK 252 (275)
T ss_pred --CceeEEEEEcCCCCeEeeccCC
Confidence 5799999999889999999965
No 46
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=95.50 E-value=0.12 Score=45.49 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=53.1
Q ss_pred eeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEe--cCCcceeeccCCCccchhhccCCCceEEEE
Q 002773 161 SLGVKISKKDNAVELFKRACKIFSIESELLHIWDF--SGQTTLYFLNDKNKFSKDCLRLSDHEILLE 225 (882)
Q Consensus 161 ~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~--~~~~~~~~l~~~~~tL~~~~l~~~q~IllE 225 (882)
.....+++..||.+|+.++-.+++++++..||-.+ .+......+.+..++|...++.++..|.+.
T Consensus 15 ~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 15 SVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 67899999999999999999999999998888776 345555667778889999999998777655
No 47
>PTZ00044 ubiquitin; Provisional
Probab=94.74 E-value=0.15 Score=43.59 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=54.3
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEe
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQI 228 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~~ 228 (882)
++...++.++..+||.+++.++....+++.++.||| |.+. .|++ +.+|.+.++..+..|.+-++.
T Consensus 9 ~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~----~L~d-~~~l~~~~i~~~~~i~l~~~~ 73 (76)
T PTZ00044 9 TGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YSGK----QMSD-DLKLSDYKVVPGSTIHMVLQL 73 (76)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECCE----EccC-CCcHHHcCCCCCCEEEEEEEc
Confidence 456788999999999999999999999999999999 5433 3554 567999999999888887764
No 48
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=94.42 E-value=0.16 Score=43.00 Aligned_cols=62 Identities=8% Similarity=0.004 Sum_probs=51.1
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 224 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~Ill 224 (882)
.+....+.++..+||.+++.++....+++.++.|||. .+ ..|++...+|+++++..+..|+|
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~-~G----k~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIY-NG----RELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE-CC----eEccCCcccHHHcCCCCCCEEEE
Confidence 4556789999999999999999999999999999993 32 34566557899999999887776
No 49
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=94.13 E-value=0.22 Score=42.44 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=52.5
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
++...++.++..+||.+++++++...+++.++.||+ |.+ ..|++ +.+|.++++..+..|.+-++
T Consensus 9 ~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~~G----~~L~d-~~~L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 9 QGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLL-FKG----KALAD-DKRLSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECC----EECCC-CCCHHHCCCCCCCEEEEEEc
Confidence 456678899999999999999999999999999998 433 23555 57899999999988876544
No 50
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=93.78 E-value=0.24 Score=42.45 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=47.6
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccC-CCceEEE
Q 002773 159 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRL-SDHEILL 224 (882)
Q Consensus 159 ~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~-~~q~Ill 224 (882)
+...++.++..+||.+|+.++....+++++.-|| +.+.. |.+.+++|.++++. .|..+.|
T Consensus 12 ~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL--~~G~~----L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 12 TVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW--VIGQR----LARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE--EcCCe----eCCCcCCHHHcCCCCCCCEEEE
Confidence 4567889999999999999999999999998999 44333 44456789999998 4455544
No 51
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=93.20 E-value=0.51 Score=40.08 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=52.9
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEe
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQI 228 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~~ 228 (882)
++....+.++...|+.+|++++....+++.+..||+ +.+. .|.+ +.+|.++++..+..|.+-++.
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g~----~L~d-~~tl~~~~i~~g~~i~l~~~~ 73 (76)
T cd01806 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGK----QMND-DKTAADYKLEGGSVLHLVLAL 73 (76)
T ss_pred CCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECCe----EccC-CCCHHHcCCCCCCEEEEEEEc
Confidence 355677899999999999999999999999999999 5432 3444 568999999999888777663
No 52
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=92.87 E-value=0.81 Score=40.34 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=52.3
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
++..+.+.+++.+|+..|++..|+..+++.+++|++. .+ ..|.+ +.|+.++++..+..|-+-++
T Consensus 20 ~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f-~G----~~L~~-~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 20 DGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF-DG----QRIRD-NQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred CCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE-CC----eECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 4667889999999999999999999999999999994 32 23433 57899999999887766555
No 53
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=92.73 E-value=0.54 Score=39.92 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=53.2
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEe
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQI 228 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~~ 228 (882)
++....+.++..+|+.+|++++.+..+++.+..||| +.+. .|.+ +.+|.++++..+..|.+-++.
T Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~-~~g~----~L~d-~~~L~~~~i~~~~~i~l~~~~ 73 (76)
T cd01803 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK----QLED-GRTLSDYNIQKESTLHLVLRL 73 (76)
T ss_pred CCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE-ECCE----ECCC-CCcHHHcCCCCCCEEEEEEEc
Confidence 355678899999999999999999999999999999 4432 3544 568999999999888887764
No 54
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=92.72 E-value=0.42 Score=40.06 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=50.7
Q ss_pred EeecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEE
Q 002773 155 VMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLE 225 (882)
Q Consensus 155 ~~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE 225 (882)
+...+....+.++..+|+.+|++.+....+++.+..||+. .+. .|.+ +.+|.++++..+..|.+.
T Consensus 5 vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-~g~----~l~d-~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 5 VKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF-KGK----ERDD-AETLDMSGVKDGSKVMLL 69 (71)
T ss_pred EEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEee-CCc----ccCc-cCcHHHcCCCCCCEEEEe
Confidence 3334555678899999999999999999999999999983 322 2443 578999999998887664
No 55
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=92.21 E-value=1 Score=39.48 Aligned_cols=65 Identities=18% Similarity=0.143 Sum_probs=52.9
Q ss_pred eeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcce-eeccCCCccchhhccCCCceEEEE
Q 002773 161 SLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTL-YFLNDKNKFSKDCLRLSDHEILLE 225 (882)
Q Consensus 161 ~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~-~~l~~~~~tL~~~~l~~~q~IllE 225 (882)
.....++...||.+|++++-..+++++...||..+.+.... ..|.+..++|...++.++..|.+.
T Consensus 14 ~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 14 SFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred eeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 45677999999999999999999999999999766655322 346677788999999999888765
No 56
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=91.98 E-value=0.84 Score=38.81 Aligned_cols=66 Identities=8% Similarity=0.078 Sum_probs=53.3
Q ss_pred ecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEe
Q 002773 157 RETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQI 228 (882)
Q Consensus 157 ~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~~ 228 (882)
..+...++.++..+||.+|++++....+++.++.||+ +. ...|.+ +.+|.++++..+..+.+-.+.
T Consensus 6 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~~----G~~L~D-~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01810 6 DKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLS-FE----GRPMED-EHPLGEYGLKPGCTVFMNLRL 71 (74)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-EC----CEECCC-CCCHHHcCCCCCCEEEEEEEc
Confidence 3456678999999999999999999999999999997 32 233554 478999999999888877763
No 57
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=91.65 E-value=0.64 Score=39.19 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=49.0
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 224 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~Ill 224 (882)
.+....+.++..+||.+++.++....+++.++-||| |.+. .|++ +.+|.++++..+..|-+
T Consensus 7 ~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li-~~G~----~L~D-~~~l~~~~i~~~~tv~~ 67 (70)
T cd01794 7 TGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWF-FSGK----LLTD-KTRLQETKIQKDYVVQV 67 (70)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-ECCe----ECCC-CCCHHHcCCCCCCEEEE
Confidence 456678999999999999999999999999999998 4432 3555 56799999987766544
No 58
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=91.30 E-value=0.56 Score=41.70 Aligned_cols=62 Identities=18% Similarity=0.111 Sum_probs=53.7
Q ss_pred eeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 161 SLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 161 ~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
...+.++..+|+++|+..+...|++++.+=+||.. +. .|.+..+||.+.++.++-.|.|=+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d-G~----~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID-GK----ILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec-Cc----eeccCCccHHhcCCCCCCEEEEEec
Confidence 46788999999999999999999999999899954 33 6778899999999999988877664
No 59
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=91.22 E-value=1.1 Score=37.31 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=51.0
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 159 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 159 ~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
+..+.+.+...+||.+|++.+....+++.++.||-. . ...| ..+.||.++++..+..|.+-++
T Consensus 5 g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~-~----G~~L-~d~~tL~~~~i~~~~~I~l~~k 67 (69)
T PF00240_consen 5 GKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY-N----GKEL-DDDKTLSDYGIKDGSTIHLVIK 67 (69)
T ss_dssp SEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE-T----TEEE-STTSBTGGGTTSTTEEEEEEES
T ss_pred CcEEEEEECCCCCHHHhhhhcccccccccccceeee-e----eecc-cCcCcHHHcCCCCCCEEEEEEe
Confidence 446789999999999999999999999999988873 2 2345 4477899999999887776544
No 60
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=91.05 E-value=1.1 Score=37.68 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=49.7
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 224 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~Ill 224 (882)
.+....+.+...+||.++++.+....+++.++.||+ |.+. .|.+ +.+|.++++..+..+.+
T Consensus 7 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li-~~G~----~L~d-~~~l~~~~i~~~stl~l 67 (70)
T cd01798 7 TGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI-FAGK----ELRN-TTTIQECDLGQQSILHA 67 (70)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE-ECCe----ECCC-CCcHHHcCCCCCCEEEE
Confidence 456678899999999999999999999999999998 4332 3555 57899999998877654
No 61
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=90.49 E-value=1.2 Score=37.20 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=49.8
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 224 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~Ill 224 (882)
++....+.++..+|+.++++++....+++.+..||+. .+ ..|.+ +.+|.++++..+..|.+
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-~g----~~L~d-~~~L~~~~i~~~~~l~l 69 (72)
T cd01809 9 DSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY-SG----RVLKD-DETLSEYKVEDGHTIHL 69 (72)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-CC----EECCC-cCcHHHCCCCCCCEEEE
Confidence 4566789999999999999999999999999999983 32 35555 57899999998877654
No 62
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=90.48 E-value=1.5 Score=37.17 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=50.8
Q ss_pred CeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 160 NSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 160 ~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
...++.+...+||.+++.++....+++.++.||| |.+ ..|.+ +.||.++++..+..|-+-++
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li-~~G----k~L~D-~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLL-LAG----VPLED-DATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEE-ECC----eECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 4577889999999999999999999999999998 332 23555 47899999998888766665
No 63
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=90.35 E-value=1.3 Score=37.21 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=46.6
Q ss_pred eEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEE
Q 002773 162 LGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLE 225 (882)
Q Consensus 162 ~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE 225 (882)
..+.+...+|+.+|++.+.+..+++.++.||+. .+ ..|.+ +.+|.++++..+..|.+-
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~-~G----k~L~d-~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF-AG----KILKD-TDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE-CC----eEcCC-CCcHHHcCCCCCCEEEEE
Confidence 578899999999999999999999988889873 22 24554 468999999988877654
No 64
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=90.27 E-value=2.1 Score=37.11 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=51.9
Q ss_pred eecCCeeEEEEcccccHHHHHHHHHhHcCCCCcc-eEEEEecCCcceeeccCCCccchhhccCCCceEEEE
Q 002773 156 MRETNSLGVKISKKDNAVELFKRACKIFSIESEL-LHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLE 225 (882)
Q Consensus 156 ~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~-~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE 225 (882)
.+++..+...|...+|+++|+..+......+... ++|..-...... -...++||.++++..+..|+||
T Consensus 13 lpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l--~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 13 LPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRREL--TDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp ETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEEC--CSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCC--CccccccHHHhcCCCCeEEEEE
Confidence 4677889999999999999999998877666554 888754433222 2222589999999999888887
No 65
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=89.88 E-value=1.3 Score=37.82 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=52.3
Q ss_pred CeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEe
Q 002773 160 NSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQI 228 (882)
Q Consensus 160 ~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~~ 228 (882)
....+.++..+||.+++.++-...+++.+..+|+ +.+ ..|++ +++|.++++.++..|.+-++.
T Consensus 8 ~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~-~~G----~~L~d-~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 8 QMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQ-YEG----IFIKD-SNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC----EEcCC-CCcHHHcCCCCCCEEEEEEec
Confidence 4567888999999999999999999999999998 433 24555 578999999999988887774
No 66
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=89.16 E-value=2.1 Score=39.12 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=53.2
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEe
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQI 228 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~~ 228 (882)
.+...++.++..+||.+|++++....+++.++.||| |.+ ..|++ +.+|.+.++..+..|-+-++.
T Consensus 36 ~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi-~~G----k~L~D-~~tL~dy~I~~~stL~l~~~l 100 (103)
T cd01802 36 TGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLI-WNN----MELED-EYCLNDYNISEGCTLKLVLAM 100 (103)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-ECC----EECCC-CCcHHHcCCCCCCEEEEEEec
Confidence 355678899999999999999999999999999998 332 23555 468999999999888887764
No 67
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=89.04 E-value=2.5 Score=36.00 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=51.1
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCC--CCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSI--ESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i--~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
.+....+.++..+|+.++++.+....++ +.++.||+ +. ...|++ +.+|.++++..+..|++-+.
T Consensus 9 ~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~-~~----G~~L~d-~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 9 KQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLI-YS----GKILKD-DTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEE-EC----CEEccC-CCCHHHcCCCCCCEEEEEEe
Confidence 3456788999999999999999999999 88888888 32 235554 46899999999888877654
No 68
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=88.53 E-value=2.5 Score=35.94 Aligned_cols=61 Identities=15% Similarity=-0.011 Sum_probs=49.3
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEE
Q 002773 159 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLE 225 (882)
Q Consensus 159 ~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE 225 (882)
+....+.++..+||.+|++.+-..++++.+..||- +.+ ..|.+ ++||.++++.++..|.+=
T Consensus 11 Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi-~~G----k~L~D-~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK-KWY----TIFKD-HISLGDYEIHDGMNLELY 71 (73)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-eCC----cCCCC-CCCHHHcCCCCCCEEEEE
Confidence 56677789999999999999999999999999986 332 34655 468999999998877653
No 69
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=88.39 E-value=2.1 Score=36.81 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=48.4
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 159 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 159 ~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
+....+.++..+|+.+|++.+.+.++++.+..||- +.+ ..|.+. +|.++++.++..|.+=..
T Consensus 11 G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~-~~G----k~L~d~--~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 11 GTRFDLSVPPDETVEGLKKRISQRLKVPKERLALL-HRE----TRLSSG--KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred CCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE-ECC----cCCCCC--cHHHcCCCCCCEEEEEee
Confidence 45578999999999999999999999988877775 332 245553 799999999887766443
No 70
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=88.15 E-value=2.4 Score=36.60 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=49.1
Q ss_pred EE-EEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEe
Q 002773 163 GV-KISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQI 228 (882)
Q Consensus 163 ~~-~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~~ 228 (882)
.+ .+...+||.++++++....+++.++-||| |. ...|++ +.+|.+.++..+..|.+-++.
T Consensus 15 ~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi-~~----Gk~L~D-~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 15 TVDSLSRLTKVEELREKIQELFNVEPECQRLF-YR----GKQMED-GHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred EeeccCCcCcHHHHHHHHHHHhCCCHHHeEEE-eC----CEECCC-CCCHHHcCCCCCCEEEEEEec
Confidence 45 36789999999999999999999999998 33 234555 568999999999999887774
No 71
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=87.44 E-value=3.1 Score=35.99 Aligned_cols=66 Identities=14% Similarity=0.057 Sum_probs=51.0
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
.+....+.+...+||.+|++.+.+.++++.+..||-..+.. ..|++ +.+|.++++..+..|.+-++
T Consensus 11 ~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G---~~L~D-~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 11 GGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSR---EVLQD-GVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCC---CCCCC-CCCHHHcCCCCCCEEEEEEE
Confidence 34567778899999999999999999999988888322222 24555 46899999999988877665
No 72
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=86.83 E-value=4.6 Score=34.88 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=50.1
Q ss_pred eecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeecc--CCCccchhhccCCCceEEEE
Q 002773 156 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLN--DKNKFSKDCLRLSDHEILLE 225 (882)
Q Consensus 156 ~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~--~~~~tL~~~~l~~~q~IllE 225 (882)
.+++..+...|+..+||++|++.+....+.....++|---.... .+. +.++||.++++..+..+++|
T Consensus 11 lPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk---~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 11 LPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRR---TFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCc---CCccccccCCHHHCCCCCceEEEEe
Confidence 46788899999999999999999966555555567776433222 232 33679999999988888886
No 73
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=86.37 E-value=3 Score=35.51 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=50.1
Q ss_pred EeecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEE--ecCCcceeeccCCCccchhhccCCCceEEE
Q 002773 155 VMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWD--FSGQTTLYFLNDKNKFSKDCLRLSDHEILL 224 (882)
Q Consensus 155 ~~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~--~~~~~~~~~l~~~~~tL~~~~l~~~q~Ill 224 (882)
+.-......+.+...+|+.++++++....+++.+.-+|-. +.+ ..+.+ +.+|.++++..+..|++
T Consensus 5 vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~G----k~l~D-~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 5 VKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKG----KPAED-DVKISALKLKPNTKIMM 71 (74)
T ss_pred EEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccC----CcCCC-CcCHHHcCCCCCCEEEE
Confidence 3334555778899999999999999999999998888774 222 24554 57899999998877764
No 74
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=86.34 E-value=1.8 Score=37.53 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=38.3
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeec-cCCCccchhhccCCCceEEEE
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFL-NDKNKFSKDCLRLSDHEILLE 225 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l-~~~~~tL~~~~l~~~q~IllE 225 (882)
.+....+.++..+|+.+|++++.+.|+++.+...|..- .+....+ ...++||.++++.-|..|.|.
T Consensus 12 ~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~--~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 12 KDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKD--RNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSS--GGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEec--CCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 34456788999999999999999999999887766532 3333333 456789999999998877653
No 75
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=85.94 E-value=3.2 Score=34.80 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=46.4
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCC-cceEEEEecCCcceeeccCCCccchhhccCCCceE
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIES-ELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEI 222 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~-~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~I 222 (882)
++....+.+.+..+++.|++..|+..+++. ++++++ |.+. .|+ .++|++++++..+..|
T Consensus 9 ~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~-fdG~----~L~-~~~T~~~~~ied~d~I 68 (72)
T PF11976_consen 9 DGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLI-FDGK----RLD-PNDTPEDLGIEDGDTI 68 (72)
T ss_dssp TSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEE-ETTE----EE--TTSCHHHHT-STTEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEE-ECCE----EcC-CCCCHHHCCCCCCCEE
Confidence 355788999999999999999999999999 899998 3332 233 3679999999987654
No 76
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=84.22 E-value=3.6 Score=33.24 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=42.8
Q ss_pred CeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCC
Q 002773 160 NSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSD 219 (882)
Q Consensus 160 ~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~ 219 (882)
....+.++...|+.+|+..+...++++.+..||+. .+ ..|.+ +.+|.++++..+
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~-~g----~~L~d-~~tL~~~~i~~~ 63 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY-KG----KVLED-DRTLADYNIQDG 63 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-CC----EECCC-CCCHHHcCCcCC
Confidence 46678899999999999999999999988888873 22 23554 578998887654
No 77
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=82.71 E-value=8.5 Score=32.89 Aligned_cols=67 Identities=6% Similarity=-0.047 Sum_probs=47.0
Q ss_pred eecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEE
Q 002773 156 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLE 225 (882)
Q Consensus 156 ~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE 225 (882)
.+++..+...|+..+|+++|++.+.....- ...++|+--........ .+.+.||++++|.+ ..++++
T Consensus 9 lpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~-~~~~~TL~e~gL~~-s~~~~~ 75 (77)
T cd01767 9 LPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTD-LDYELTLQEAGLVN-EVVFQR 75 (77)
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCC-CCccCcHHHcCCcc-ceEEEE
Confidence 467778899999999999999999765432 55688885443332211 14688999999995 444544
No 78
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=82.30 E-value=9.4 Score=33.51 Aligned_cols=69 Identities=6% Similarity=-0.028 Sum_probs=47.5
Q ss_pred eecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeec----cCCCccchhhccCCCceEEEE
Q 002773 156 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFL----NDKNKFSKDCLRLSDHEILLE 225 (882)
Q Consensus 156 ~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l----~~~~~tL~~~~l~~~q~IllE 225 (882)
.+++..+...|...+|+++|+..+-. ..-.+++++|---+.......+ .+.+.||+++||.....++++
T Consensus 11 lp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 11 LPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 46778889999999999999999943 2333456666432222222211 345779999999988888776
No 79
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=81.97 E-value=0.69 Score=45.79 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=16.4
Q ss_pred CCccccccCCCcccHHHHHHHHhC
Q 002773 279 LGLTGLQNLGNTCFMNSALQCLVH 302 (882)
Q Consensus 279 ~g~~GL~NlGNTCYmNSvLQ~L~~ 302 (882)
.-+.|+.|.+|||++||++|.+..
T Consensus 31 ~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 31 MEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp -EEE----SSSTHHHHHHHHHHHH
T ss_pred eEEecCCCCCCChHHHHHHHHHHH
Confidence 356799999999999999998753
No 80
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=81.54 E-value=5.3 Score=32.73 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=46.5
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002773 159 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 224 (882)
Q Consensus 159 ~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~Ill 224 (882)
+....+.+....|+.++++++.+.++++.+..+|+. .+ ..+++ +.+|.++++.++..|.+
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~-~g----~~l~d-~~~l~~~~v~~~~~i~v 66 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY-AG----KILKD-DKTLSDYGIQDGSTLHL 66 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE-CC----cCCCC-cCCHHHCCCCCCCEEEE
Confidence 455678888999999999999999999998888853 32 23444 56799999988776654
No 81
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=81.53 E-value=7.6 Score=33.69 Aligned_cols=70 Identities=10% Similarity=-0.016 Sum_probs=50.4
Q ss_pred eecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 156 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 156 ~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
++++......|...+++++|+..+... +.+...++|---.....+. ..+.+.||++++|.....++||.+
T Consensus 11 lP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~-~~d~~~TL~e~gL~p~~~L~Veer 80 (80)
T cd01771 11 TPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLT-QLDPNFTLLELKLYPQETLILEER 80 (80)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCc-CCCCCCcHHHcCCCCCcEEEEEcC
Confidence 567788899999999999999998653 4445566665333222222 234567999999999889999853
No 82
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=79.93 E-value=13 Score=31.49 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=43.4
Q ss_pred eecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEE
Q 002773 156 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLEL 226 (882)
Q Consensus 156 ~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~ 226 (882)
.+++....+.+....|++|.+..+|+..++..+.+.++... ..+..-++... ....++.+.+|.
T Consensus 7 LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~-~~k~l~~~~d~------~~L~~~El~ve~ 70 (71)
T PF02196_consen 7 LPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG-EKKPLDWDQDS------SSLPGEELRVEK 70 (71)
T ss_dssp ETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE-EEEEE-TTSBG------GGGTTSEEEEEE
T ss_pred CCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC-CCccccCCCce------eeecCCEEEEEe
Confidence 36778889999999999999999999999999988888554 22222223222 333457888885
No 83
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=76.99 E-value=19 Score=31.41 Aligned_cols=71 Identities=6% Similarity=0.048 Sum_probs=51.1
Q ss_pred EeecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 155 VMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 155 ~~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
..+++......|...+++.+|+..+-. .+.+.+++.|---........ .+.+.||++++|.....++||-+
T Consensus 11 RlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~-~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 11 RYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSH-LDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCC-cccCCCHHHcCCCCCcEEEEecC
Confidence 356788889999999999999998765 355666676663322222222 34467999999999999988854
No 84
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=74.42 E-value=17 Score=30.84 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=49.6
Q ss_pred eecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 156 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 156 ~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
.+|++...+.+..-.||+|++.++|+..++..+.+.++... ..+...++. +.....+++|.+|.+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g-~~k~l~~~q------D~~~L~~~El~vE~r 70 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG-GDKPLVLDQ------DSSVLAGQEVRLEKR 70 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec-CCcccccCC------ccceeeccEEEEEEe
Confidence 46778889999999999999999999999999989888773 333333333 334444688888866
No 85
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=73.94 E-value=3.9 Score=40.68 Aligned_cols=35 Identities=31% Similarity=0.547 Sum_probs=26.0
Q ss_pred Eeec--cCCCceEEEEEEcCCCCEEEEcCCcceeeCcc
Q 002773 828 NHYG--SMGGGHYTAFVHHGGGQWYDFDDSHVYPISQD 863 (882)
Q Consensus 828 ~H~G--~l~gGHYtAy~k~~~~~Wy~fnDs~V~~v~~~ 863 (882)
.|.| --|.||-++|++.. +.||.|||..+.+-+++
T Consensus 129 f~agi~~~g~~Havfa~~ts-~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 129 FHAGIFLKGQEHAVFACVTS-DGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp EEEEEEEESTTEEEEEEEET-TCEEEEETTEEEE----
T ss_pred hhhHheecCCcceEEEEEee-CcEEEecCCeeeeCCCC
Confidence 4666 35789999999864 68999999999998864
No 86
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=73.07 E-value=3.1 Score=33.84 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=29.4
Q ss_pred CCCCCCCCCcCcceeEEEEEec--ccCCeEEEEEeceEe
Q 002773 749 EDMWYCPGCKKHCQASKKLDLW--RLPEILVIHLKRFSY 785 (882)
Q Consensus 749 ~d~w~C~~Ck~~~~A~K~~~i~--~lP~iLiIhLKRF~~ 785 (882)
.++|.||+|+-+.-..|.+... .+.+++=|++++|-.
T Consensus 2 ~~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 2 KNAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred CccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 3678999999987777776664 678899999999863
No 87
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=70.65 E-value=18 Score=30.74 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=47.5
Q ss_pred eecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCc-ceeeccCCCccchhhccCCCceEEEEE
Q 002773 156 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQT-TLYFLNDKNKFSKDCLRLSDHEILLEL 226 (882)
Q Consensus 156 ~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~-~~~~l~~~~~tL~~~~l~~~q~IllE~ 226 (882)
.+|+....+.+....|+.|+++.+|+..+++++.+.+....+.. +...+ -+++....++.|.+|.
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~~~~~~------~~d~~~L~~~El~Ve~ 71 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKKPLDL------DTDSSSLAGEELEVEP 71 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCcCc------hhhhhhhcCCEEEEEe
Confidence 46788889999999999999999999999999988888664332 11111 2334455567777764
No 88
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=70.10 E-value=24 Score=30.54 Aligned_cols=46 Identities=7% Similarity=0.174 Sum_probs=37.3
Q ss_pred ceEEEEEEeecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEec
Q 002773 148 PLQLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFS 196 (882)
Q Consensus 148 P~~l~l~~~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~ 196 (882)
|..+|++... .+.+.+...-+..+|.+++++.|+++.+.+.|+-..
T Consensus 2 ~~vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 2 SYVVKVHFKY---TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred CeEEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 3455666532 578899999999999999999999998889998544
No 89
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=69.30 E-value=8.1 Score=32.06 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=32.0
Q ss_pred ecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCce
Q 002773 157 RETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHE 221 (882)
Q Consensus 157 ~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~ 221 (882)
++....++.++...++.++++.+|+.|+++.++..|-. +++. + +.+..+.=++|.++..
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h---~~k~--l-dlslp~R~snL~n~ak 62 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKH---NNKP--L-DLSLPFRLSNLPNNAK 62 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEE---TTEE--E-SSS-BHHHH---SS-E
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEE---CCEE--e-ccccceeecCCCCCCE
Confidence 34566789999999999999999999999988655542 1111 2 2233455556665543
No 90
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=68.09 E-value=24 Score=30.44 Aligned_cols=68 Identities=4% Similarity=-0.042 Sum_probs=46.6
Q ss_pred eecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEE
Q 002773 156 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLE 225 (882)
Q Consensus 156 ~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE 225 (882)
.+++..+...|+..+|+.+|+..+.....- ...+.|---.....+. .++.++||.+++|.+...++|+
T Consensus 11 lp~G~~~~~~F~~~~tl~~v~~fV~~~~~~-~~~f~L~t~fPrk~~~-~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 11 LLDGTTLKQTFKAREQLAAVRLFVELNTGN-GGPFTLMTPFPRKVFT-EDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred CCCCCEEEEEeCCCChHHHHHHHHHHcCCC-CCCEEEEeCCCCeECC-cccccCCHHHCCCCCceEEEEe
Confidence 367778899999999999999999765432 2445554322222111 1245789999999998887775
No 91
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=66.24 E-value=42 Score=29.31 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=40.3
Q ss_pred cceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEE-EecceeEEcccCCcccccc--cCCCCcEEE
Q 002773 482 SPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE-IYNHQIIRYLEEPADSISL--IRDDDQLVA 545 (882)
Q Consensus 482 ~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e-~~~~~~~~~~~~~~~~l~~--i~~~d~i~~ 545 (882)
...+..+++..++.+|++.|...+|++...+-+... -........+.+....|.. +.++..|.+
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 456678899999999999999999999865544332 2233444444555555543 445544443
No 92
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.80 E-value=18 Score=40.96 Aligned_cols=64 Identities=11% Similarity=0.175 Sum_probs=51.8
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcC---CCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFS---IESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~---i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
++..+.+.++..+||.+|++++....+ ++.++.||+ |.+ ..|.+ +++|.++++..+..|++=+.
T Consensus 9 ~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLI-y~G----kiL~D-d~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 9 QQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLI-YSG----KILSD-DKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEE-ECC----EECCC-CCcHHHcCCCCCCEEEEEec
Confidence 455678899999999999999999988 888889998 433 35655 46899999998887777665
No 93
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=61.42 E-value=21 Score=41.04 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=57.1
Q ss_pred EEEEEEeecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 150 QLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 150 ~l~l~~~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
.++|.+..-+.+..+.+...+||.++|+.+...|+.+.+..+|- |.+ .+|++ ++||...++.++-.|-|-++
T Consensus 15 ~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLI-faG----rILKD-~dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 15 LIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLI-YAG----RILKD-DDTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred eeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeee-ecC----ccccC-hhhHHHcCCCCCcEEEEEec
Confidence 35555554445788999999999999999999999999988877 322 45664 66899999999988877766
No 94
>smart00455 RBD Raf-like Ras-binding domain.
Probab=61.20 E-value=32 Score=28.96 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=46.1
Q ss_pred eecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEE
Q 002773 156 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLEL 226 (882)
Q Consensus 156 ~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~ 226 (882)
.+++....+.+-...|+.|++..+|+..++.++.+.+.... .++..-++. ++....++.+.+|.
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g-~~k~ldl~~------~~~~l~~~el~ve~ 69 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG-EKKPLDLNQ------PISSLDGQELVVEE 69 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC-CCcceecCC------ccccccCceEEEEe
Confidence 46778889999999999999999999999999888887542 222222222 22333567777775
No 95
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=60.49 E-value=54 Score=28.44 Aligned_cols=53 Identities=21% Similarity=0.188 Sum_probs=43.7
Q ss_pred cceEEEeCCCCCHHHHHHHHHHHhcCC-CCceEEEEEEecc-eeEEcccCCcccc
Q 002773 482 SPFTITVPKYGKFEDLIRALSIACALG-VNETLLVAEIYNH-QIIRYLEEPADSI 534 (882)
Q Consensus 482 ~~~~v~~~k~~~~~~l~~~l~~~~~~~-~~~~l~~~e~~~~-~~~~~~~~~~~~l 534 (882)
.-.++.+++..+..+++..+.+.+++. ++....++|+... ...+.+.+.+.++
T Consensus 13 ~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl 67 (87)
T cd01768 13 TYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPL 67 (87)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChH
Confidence 346789999999999999999999999 7888999999877 5677777665554
No 96
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=59.58 E-value=37 Score=35.28 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=37.9
Q ss_pred CeeEEEEcccccHHHHHHHHHhHcCCCCc---ceEEEEecCCcceeeccCCCccchhhccCCCceEEEEE
Q 002773 160 NSLGVKISKKDNAVELFKRACKIFSIESE---LLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLEL 226 (882)
Q Consensus 160 ~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~---~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~ 226 (882)
....+.+.+..||.||++.+.+.++++.+ .+|+|..++..-...+.. +..+... .....+-+|.
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~-d~~i~~l--~~~~~~r~E~ 100 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSE-DEPISSL--NDYITLRIEE 100 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-T-TSBGGGS----TTEEEEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCC-CCchhhc--cCcceeeeec
Confidence 35788899999999999999999998754 799999987766666653 4445554 2212355663
No 97
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=59.45 E-value=5.5 Score=50.16 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=87.4
Q ss_pred CCCHHHHHHHhhCcCcCCCCCCCCCCCCcCcceeEEEEEecccCCeEEEEEeceEeecccccccceeeecccCCCCcccc
Q 002773 730 SVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTH 809 (882)
Q Consensus 730 ~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~K~~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~ 809 (882)
...+.+|+..|+....+..+...-|+.|.....-. ...-. .+++|+..|+....-...+....+.+++.++.+-.+
T Consensus 481 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~ 556 (842)
T KOG1870|consen 481 VEILFDCFNKIFAADELKLDSIYSDEELFDYELGV--LKVQG--SIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVS 556 (842)
T ss_pred ceeccchhhhhhccCccccccccCCcceEEeeccc--ccccc--cceEEEEEeeccccccccCcccCCCccccCCcceee
Confidence 44678999999988876666777777776543321 11111 168888888876544455667889999888888776
Q ss_pred ccccCCccCceeeEEEEEEeeccCCCceEEEEEEcCCCCEEEEcCCcceeeC
Q 002773 810 VAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPIS 861 (882)
Q Consensus 810 v~~~~~~~~~~YdL~aVi~H~G~l~gGHYtAy~k~~~~~Wy~fnDs~V~~v~ 861 (882)
+... .....++|..+++|.++...||+ ..+.|+..++..+..+.
T Consensus 557 ~~~~--~~~t~~~l~~~~~~~~s~~~~~~------~~~v~~~~~~~~~~~~~ 600 (842)
T KOG1870|consen 557 VLSG--AQSTEEDLLSVICHRTSRYSREP------PLNVGYGVDDQSLKEVS 600 (842)
T ss_pred ccCC--CcccccchhhHHhhcccccCCcC------ccccccCCCcccccccc
Confidence 6653 25678999999999998888888 45789999998888765
No 98
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=58.48 E-value=61 Score=27.95 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=44.1
Q ss_pred eecCCeeEEEEcccccHHHHHHHHHhHcCC-CCcceEEEEecCCcceeeccCCCccchhhccCCC
Q 002773 156 MRETNSLGVKISKKDNAVELFKRACKIFSI-ESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSD 219 (882)
Q Consensus 156 ~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i-~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~ 219 (882)
.+++...+..|...+||++|++.+.....- ....+.|.--... ..+.+.+.||++++|...
T Consensus 11 lpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~---k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 11 LADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPV---KELSDESLTLKEANLLNA 72 (79)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCC---cccCCCCCcHHHCCCcCc
Confidence 467788899999999999999999876543 2345666543322 223444889999999875
No 99
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=56.96 E-value=58 Score=28.35 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=35.4
Q ss_pred eEEEEEEeecC---CeeEEEEcccccHHHHHHHHHhHcCCC--CcceEEE
Q 002773 149 LQLRLSVMRET---NSLGVKISKKDNAVELFKRACKIFSIE--SELLHIW 193 (882)
Q Consensus 149 ~~l~l~~~~~~---~~~~~~~Sr~~ti~~l~~~v~~~f~i~--~~~~RlW 193 (882)
-.++|+..... ...++.++...|.+++.+.+.+.|++. +.++.||
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 35666664222 267899999999999999999999993 4578998
No 100
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=54.10 E-value=66 Score=29.73 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=50.2
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccC-------CCceEEEEEE-ec
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRL-------SDHEILLELQ-IY 229 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~-------~~q~IllE~~-~~ 229 (882)
+............|+-+|++.+-.+.+.++++=||| ..+ .+|++ ++||.++++. ..-.+=|-++ .+
T Consensus 10 ~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~-kd~----qvLeD-~kTL~d~g~t~~~akaq~pA~vgLa~r~~d 83 (119)
T cd01788 10 HKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY-KDD----QLLDD-GKTLGDCGFTSQTARPQAPATVGLAFRSSD 83 (119)
T ss_pred cceEEEeecCCcccHHHHHHHHHHHhcCChhHheee-cCc----eeecc-cccHHHcCccccccccCCCCeEEEEEecCC
Confidence 334455666788999999999999999999999999 322 35555 7899999994 3445556666 34
Q ss_pred Ccc
Q 002773 230 GLS 232 (882)
Q Consensus 230 g~w 232 (882)
|.+
T Consensus 84 ~~f 86 (119)
T cd01788 84 DTF 86 (119)
T ss_pred CCc
Confidence 544
No 101
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=52.11 E-value=21 Score=39.47 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=40.6
Q ss_pred CCCccccccCCCcccHHHHHHHHhCChH-HHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCCCCCChHHHHH
Q 002773 278 CLGLTGLQNLGNTCFMNSALQCLVHTPK-LVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKS 356 (882)
Q Consensus 278 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~-f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 356 (882)
..|++=|.=.-|.||+||++=.|=++.. |+.- .+. ++..++.. -.|..|..
T Consensus 99 ~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~-------------------~l~----~aw~~f~~-----G~~~~fVa 150 (320)
T PF08715_consen 99 VNGFRVLKQSDNNCWVNAACLQLQALKIKFKSP-------------------GLD----EAWNEFKA-----GDPAPFVA 150 (320)
T ss_dssp ETTEEEE---TTTHHHHHHHHHHTTST--BSSH-------------------HHH----HHHHHHHT-----T--HHHHH
T ss_pred ECCEEEEEecCCCcHHHHHHHHHHhcCCccCCH-------------------HHH----HHHHHHhC-----CChHHHHH
Confidence 3466777777899999999877766542 2210 111 22222211 24555665
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHHHHH
Q 002773 357 KLARFAPQFSGFNQHDSQELLAFLLDGLH 385 (882)
Q Consensus 357 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~ 385 (882)
.+-.. ..+..++--||+++|..||..++
T Consensus 151 ~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 151 WCYAS-TNAKKGDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp HHHHH-TT--TTS---HHHHHHHHHTTB-
T ss_pred HHHHH-cCCCCCCCcCHHHHHHHHHHhcc
Confidence 55442 34556788999999999996554
No 102
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=51.78 E-value=52 Score=28.21 Aligned_cols=72 Identities=11% Similarity=0.157 Sum_probs=45.3
Q ss_pred EEEEEeecC-CeeEEEEcccccHHHHHHHHHhHcCCCCcc---eEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002773 151 LRLSVMRET-NSLGVKISKKDNAVELFKRACKIFSIESEL---LHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 224 (882)
Q Consensus 151 l~l~~~~~~-~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~---~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~Ill 224 (882)
.+|.+...+ ....+.+.-.-++++++..+...++++..+ .+-|... ......|.. +.||.++++.+|..+.|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~-~~~g~~L~~-~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLA-RAGGRPLDP-DQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG--GGTEEEET-TSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEE-ecCCcccCC-cCcHhHcCCCCCCEEEe
Confidence 455555554 788899999999999999999999986532 3468776 344444544 67899999999877654
No 103
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=49.42 E-value=9 Score=42.60 Aligned_cols=112 Identities=20% Similarity=0.227 Sum_probs=65.4
Q ss_pred CCCCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHhcCCCC-------CCC
Q 002773 277 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGA-------APV 349 (882)
Q Consensus 277 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~-------~~i 349 (882)
...-++|+.|.||-|+.+|..|.+.+..++...+-...+..+......+ ...+..-|+..++......+ .++
T Consensus 174 ~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~-~spiS~ifgg~~rs~l~~~~nkeS~tlqPF 252 (420)
T KOG1871|consen 174 DEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFV-RSPISEIFGGQLRSVLYQPSNKESATLQPF 252 (420)
T ss_pred ccccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcc-cCcHHHhhccccccceeccccccccccCcc
Confidence 3456899999999999999999999999998866443333333322211 13344444444433221110 111
Q ss_pred Ch----------HHHHHHHhhh-----CCCCC--------CCCCCCHHHHHHHHHHHHHHHhh
Q 002773 350 SP----------RTFKSKLARF-----APQFS--------GFNQHDSQELLAFLLDGLHEDLN 389 (882)
Q Consensus 350 ~p----------~~~~~~l~~~-----~~~f~--------~~~QqDA~Efl~~LLd~L~eel~ 389 (882)
-| +....++..+ .|.+. ...|-++++|..+|+..|+..+-
T Consensus 253 ~tlqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~y 315 (420)
T KOG1871|consen 253 FTLQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVY 315 (420)
T ss_pred ceeeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHH
Confidence 11 1122222222 22222 35788999999999999997654
No 104
>PLN02560 enoyl-CoA reductase
Probab=48.53 E-value=58 Score=35.96 Aligned_cols=65 Identities=18% Similarity=0.083 Sum_probs=46.3
Q ss_pred EEEEcccccHHHHHHHHHhHcCC-CCcceEEEEec--CCcceeeccCCCccchhhccCCCceEEEEEEecC
Q 002773 163 GVKISKKDNAVELFKRACKIFSI-ESELLHIWDFS--GQTTLYFLNDKNKFSKDCLRLSDHEILLELQIYG 230 (882)
Q Consensus 163 ~~~~Sr~~ti~~l~~~v~~~f~i-~~~~~RlW~~~--~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~~~g 230 (882)
++.++..+|++||++.+-+..++ +.+..||+... ++.....+++ +++|.+.++.++.+ |-++.=|
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d-~ktL~d~gv~~gst--Ly~kDLG 84 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDD-SKSLKDYGLGDGGT--VVFKDLG 84 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCC-CCCHHhcCCCCCce--EEEEeCC
Confidence 67889999999999999998876 67888999532 2222334444 56899999988765 4445434
No 105
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=45.11 E-value=45 Score=28.58 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=38.9
Q ss_pred ccccHHHHHHHHHhHcC--CC-CcceEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002773 168 KKDNAVELFKRACKIFS--IE-SELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 224 (882)
Q Consensus 168 r~~ti~~l~~~v~~~f~--i~-~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~Ill 224 (882)
-.+||.+|++.+...++ +. .++.||- |.++ .|++ +.||.+.++..+..|.+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLI-y~GK----iL~D-~~TL~dygI~~gstlhL 72 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLI-HCGR----KLKD-DQTLDFYGIQSGSTIHI 72 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEE-eCCc----CCCC-CCcHHHcCCCCCCEEEE
Confidence 36899999999999974 64 7778887 4443 3555 57899999999877655
No 106
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=44.64 E-value=17 Score=22.09 Aligned_cols=14 Identities=43% Similarity=1.146 Sum_probs=10.4
Q ss_pred EEEcCCCCEEEEcCC
Q 002773 841 FVHHGGGQWYDFDDS 855 (882)
Q Consensus 841 y~k~~~~~Wy~fnDs 855 (882)
+++. ++.||+|+++
T Consensus 3 W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEE-TTEEEEETTT
T ss_pred CEEE-CCEEEEeCCC
Confidence 4554 5899999875
No 107
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=43.36 E-value=2e+02 Score=24.22 Aligned_cols=60 Identities=12% Similarity=0.219 Sum_probs=39.5
Q ss_pred ecCCeeEEEEcccccHHHHHHHHHhHcCCCCc-ceEEEE-ecCCcceeeccCCCccchhhccC
Q 002773 157 RETNSLGVKISKKDNAVELFKRACKIFSIESE-LLHIWD-FSGQTTLYFLNDKNKFSKDCLRL 217 (882)
Q Consensus 157 ~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~-~~RlW~-~~~~~~~~~l~~~~~tL~~~~l~ 217 (882)
.|+...++.+.+..|.+++.+.+|..++|... -+=|.. .........|+. ++++.+....
T Consensus 4 lD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~-~k~l~~q~~~ 65 (80)
T PF09379_consen 4 LDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDL-DKKLKKQLKK 65 (80)
T ss_dssp SSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-S-SSBGGGSTBT
T ss_pred cCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccC-cccHHHHcCC
Confidence 35667899999999999999999999999753 344443 222333444443 4446655433
No 108
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=43.20 E-value=46 Score=29.29 Aligned_cols=41 Identities=12% Similarity=0.313 Sum_probs=34.5
Q ss_pred eEEEEEEeecCCeeEEEEcccccHHHHHHHHHhHcCCCCcce
Q 002773 149 LQLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELL 190 (882)
Q Consensus 149 ~~l~l~~~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~ 190 (882)
..|+|.+ +++..+++.+-+.++..++++.++..++++.+-.
T Consensus 2 V~L~V~L-pdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~ 42 (87)
T cd01777 2 VELRIAL-PDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQ 42 (87)
T ss_pred eEEEEEc-cCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH
Confidence 4566655 5688899999999999999999999999997643
No 109
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=42.91 E-value=1.8e+02 Score=25.28 Aligned_cols=52 Identities=19% Similarity=0.182 Sum_probs=41.5
Q ss_pred ceEEEeCCCCCHHHHHHHHHHHhcCCC-CceEEEEEEecceeEEcccCCcccc
Q 002773 483 PFTITVPKYGKFEDLIRALSIACALGV-NETLLVAEIYNHQIIRYLEEPADSI 534 (882)
Q Consensus 483 ~~~v~~~k~~~~~~l~~~l~~~~~~~~-~~~l~~~e~~~~~~~~~~~~~~~~l 534 (882)
-.++.+++..+..+++..+.+.+++.. .+...++|+......+.+.+.+.|+
T Consensus 17 ~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl 69 (90)
T smart00314 17 YKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPL 69 (90)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcce
Confidence 467889999999999999999999987 5788889998566667776555554
No 110
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=41.87 E-value=1e+02 Score=26.68 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=34.0
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCC--CcceEEEEecCC
Q 002773 159 TNSLGVKISKKDNAVELFKRACKIFSIE--SELLHIWDFSGQ 198 (882)
Q Consensus 159 ~~~~~~~~Sr~~ti~~l~~~v~~~f~i~--~~~~RlW~~~~~ 198 (882)
+...++.+++.+|..++...+.+.|+++ +.++.|+.....
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~ 53 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGD 53 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECC
Confidence 5568999999999999999999999998 357888876544
No 111
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=40.60 E-value=95 Score=26.41 Aligned_cols=44 Identities=9% Similarity=0.181 Sum_probs=34.5
Q ss_pred EEEEEEeecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEe
Q 002773 150 QLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDF 195 (882)
Q Consensus 150 ~l~l~~~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~ 195 (882)
.+++.. .+....+.+++..|+.+|..++++.|++....++|.-.
T Consensus 3 ~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 3 DVKLRY--GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred cEEEEE--CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 445544 44567788889999999999999999998777888643
No 112
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=40.57 E-value=53 Score=28.22 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=37.1
Q ss_pred cccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEecCcc
Q 002773 169 KDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQIYGLS 232 (882)
Q Consensus 169 ~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~~~g~w 232 (882)
..++++|+.++|+.|.++...++|....+.+... ++.-.+|. ++..++=+..+-.|
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeVt--EeyF~tLp------~nT~lmvL~~gq~W 75 (77)
T cd06535 20 AKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEVT--EEYFPTLP------DNTELVLLTPGQSW 75 (77)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEeh--HHHHhcCC------CCcEEEEEcCCCcc
Confidence 5789999999999999998788998777665331 22222232 45555555544455
No 113
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=40.05 E-value=1.6e+02 Score=24.98 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=36.9
Q ss_pred ceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecceeEEcccCCccccc--ccCCCCcEEEE
Q 002773 483 PFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSIS--LIRDDDQLVAY 546 (882)
Q Consensus 483 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~l~--~i~~~d~i~~y 546 (882)
.+.++++...++.+|++.++...+++....-++ +.. +++.|. ..|+ .|.++..|..|
T Consensus 13 ~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi---~~G---k~L~D~-~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 13 KVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK---KWY---TIFKDH-ISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE---eCC---cCCCCC-CCHHHcCCCCCCEEEEE
Confidence 355678889999999999999888876554332 333 344432 2332 36666666655
No 114
>COG3651 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.98 E-value=18 Score=32.29 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.7
Q ss_pred CCCCCCCEEEEEcchhH
Q 002773 25 NNNDNDQRVYLVPYRWW 41 (882)
Q Consensus 25 ~~~~~g~~~ylIs~~W~ 41 (882)
.+|++||+|+|...+|=
T Consensus 74 pglkpgdrwclcaarwq 90 (125)
T COG3651 74 PGLKPGDRWCLCAARWQ 90 (125)
T ss_pred CCCCCCCeeeeeHHHHH
Confidence 48999999999998863
No 115
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=37.60 E-value=2.2e+02 Score=26.41 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=47.4
Q ss_pred eEEEEEEeecCCeeEEEEcccccHHHHHHHHHhHc----CC-C--CcceEEEEecCCcceeeccCCCccchhhccCCCce
Q 002773 149 LQLRLSVMRETNSLGVKISKKDNAVELFKRACKIF----SI-E--SELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHE 221 (882)
Q Consensus 149 ~~l~l~~~~~~~~~~~~~Sr~~ti~~l~~~v~~~f----~i-~--~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~ 221 (882)
+.|++.+........+.|+...||.+|++++...- .. + ...+||-. . . .+|++ ++||.++.+..+..
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~-~-G---riL~d-~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIY-A-G---RILED-NKTLSDCRLPSGET 76 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE-T-T---EEE-S-SSBTGGGT--TTSE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEe-C-C---eecCC-cCcHHHhCCCCCCC
Confidence 46666665334478889999999999999998643 11 1 34677773 2 2 36664 67899998887654
Q ss_pred ----EEEEEEe
Q 002773 222 ----ILLELQI 228 (882)
Q Consensus 222 ----IllE~~~ 228 (882)
+++.+..
T Consensus 77 ~~~~~vmHlvv 87 (111)
T PF13881_consen 77 PGGPTVMHLVV 87 (111)
T ss_dssp TT--EEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 7777763
No 116
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=36.67 E-value=1.5e+02 Score=25.66 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=37.2
Q ss_pred eEEEEcccccHHHHHHHHHhHcC-C-CCcceEEEEecCCcceeeccCCCccchhhc--cCCCceE
Q 002773 162 LGVKISKKDNAVELFKRACKIFS-I-ESELLHIWDFSGQTTLYFLNDKNKFSKDCL--RLSDHEI 222 (882)
Q Consensus 162 ~~~~~Sr~~ti~~l~~~v~~~f~-i-~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~--l~~~q~I 222 (882)
+.+.+.-.+||.++++++.+.+. . +.+.-||- |.+ ..|.+ +.||.+.. +..+..|
T Consensus 16 ~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLI-y~G----KiLkD-~~tL~~~~~~~~~~~ti 74 (79)
T cd01790 16 QTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLI-YSG----KLLPD-HLKLRDVLRKQDEYHMV 74 (79)
T ss_pred EEEecCCcChHHHHHHHHHHhcCCCCChhHeEEE-EcC----eeccc-hhhHHHHhhcccCCceE
Confidence 34444789999999999999884 3 35777776 333 35655 46788874 5555444
No 117
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=35.96 E-value=1.5e+02 Score=26.00 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=49.7
Q ss_pred EEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEec-ceeEEcccCCcc
Q 002773 468 MTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYN-HQIIRYLEEPAD 532 (882)
Q Consensus 468 ~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~-~~~~~~~~~~~~ 532 (882)
..|.|+..||.+ ..+.+....+..++++.|.....+..+....++|..- .++-|.|+|.+.
T Consensus 3 ~vvkv~~~Dg~s----K~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~ 64 (85)
T cd01787 3 QVVKVYSEDGAS----KSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHEL 64 (85)
T ss_pred eEEEEEecCCCe----eEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHH
Confidence 456677888875 5778899999999999999999999999999998765 467788876543
No 118
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=35.28 E-value=57 Score=24.73 Aligned_cols=37 Identities=8% Similarity=0.189 Sum_probs=31.2
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEE
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWD 194 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~ 194 (882)
+.....+.++...|++++++.++..++++...++|+.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~ 42 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLV 42 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEE
Confidence 3455678888999999999999999998888888873
No 119
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=33.99 E-value=2.4e+02 Score=24.37 Aligned_cols=66 Identities=18% Similarity=0.121 Sum_probs=45.7
Q ss_pred EEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcC-CCCceEEEEE-EecceeEEcccCCcccc
Q 002773 469 TLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACAL-GVNETLLVAE-IYNHQIIRYLEEPADSI 534 (882)
Q Consensus 469 ~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~-~~~~~l~~~e-~~~~~~~~~~~~~~~~l 534 (882)
.+.|+..++.....-.++.+++..+..++++.+.+.+++ .+...+.+++ ...+...+.+.+.+.++
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl 71 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPL 71 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHH
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchH
Confidence 355666666655556778999999999999999999999 5555666653 34455566666544443
No 120
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=33.62 E-value=2.1e+02 Score=24.95 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=32.8
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCC--cceEEEEec
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIES--ELLHIWDFS 196 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~--~~~RlW~~~ 196 (882)
+....++.+++..|..++...+.+.|+++. .++.|+...
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~ 54 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVL 54 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEe
Confidence 356789999999999999999999999985 467777654
No 121
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=32.94 E-value=45 Score=38.62 Aligned_cols=75 Identities=23% Similarity=0.304 Sum_probs=62.2
Q ss_pred CCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecc-eeEEcccCCcccccccC
Q 002773 460 LPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNH-QIIRYLEEPADSISLIR 538 (882)
Q Consensus 460 lp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~~~~~~l~~i~ 538 (882)
++..+.+.+.|.|+..||.. ..+.|....+.+|+++.|.....+..++..-++|.+-| .+.|.|+|.+..++.+.
T Consensus 181 lk~a~vrklvVKvfseDgas----ksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls 256 (622)
T KOG3751|consen 181 LKEAKVRKLVVKVFSEDGAS----KSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLS 256 (622)
T ss_pred cccccccceeEEEEccCCce----eeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHh
Confidence 45566778889999999976 56788899999999999999888888899999999988 78999998776655443
No 122
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=32.65 E-value=2.9e+02 Score=27.75 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=39.6
Q ss_pred ceEEEEEEeecCCeeEEEEcccccHHHHHHHHHhHcCCCC-cceEEEEecCCc
Q 002773 148 PLQLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIES-ELLHIWDFSGQT 199 (882)
Q Consensus 148 P~~l~l~~~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~-~~~RlW~~~~~~ 199 (882)
|..++|+.. ++....+.+....|+.++.+.+|+.++|.. .-+-||......
T Consensus 3 ~~~~~V~l~-dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~ 54 (207)
T smart00295 3 PRVLKVYLL-DGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDE 54 (207)
T ss_pred cEEEEEEec-CCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCC
Confidence 556676664 556778999999999999999999999974 457788665443
No 123
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=32.01 E-value=19 Score=42.31 Aligned_cols=103 Identities=16% Similarity=0.072 Sum_probs=54.4
Q ss_pred CCCccccccCCCcccHHHHHHHHhCChHHHHHHHh----ccccccCCCCCCCCchHHHHHHHHHHHHhcCCC-CCCCChH
Q 002773 278 CLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLG----DYFREINHDNPLGMDGEIALAFGDLLRKLWAPG-AAPVSPR 352 (882)
Q Consensus 278 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~----~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~-~~~i~p~ 352 (882)
..-..|+.+.+|||+||+.+|.++.++.|.-..-. ...... .... ..-....+..+...+-... .....|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~t~~~~~~~ 149 (492)
T KOG1867|consen 74 KLEHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIKKYK-EQPF---HQLDSTLLTHLAEATVCQQTLLKENPK 149 (492)
T ss_pred cccccccccccccceeehhhheeccCCcEeeccchhhHHHHHhhh-ccch---hhccchhhhhhhhhhccchhcccCCcc
Confidence 34568899999999999999999999976533210 000000 0000 0111111111111111111 1112222
Q ss_pred HHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHH
Q 002773 353 TFKSKLARFAPQFSGFNQHDSQELLAFLLDGLH 385 (882)
Q Consensus 353 ~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~ 385 (882)
.........-.+.|..=+++.+|+..+|..|.
T Consensus 150 -~~~~~~~~~~~l~g~~n~g~tcfmn~ilqsl~ 181 (492)
T KOG1867|consen 150 -DRLVLSTTALGLRGLRNLGSTCFMNVILQSLL 181 (492)
T ss_pred -cccccceeeecccccccccHHHHHHHHHHHhh
Confidence 11222334446778889999999999999886
No 124
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=31.87 E-value=4.1e+02 Score=24.47 Aligned_cols=73 Identities=22% Similarity=0.209 Sum_probs=47.8
Q ss_pred EEeCCCCceeeEEE-EEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCC----CCceEEEEEEecceeEEcccC
Q 002773 457 SLPLPSTTVRMMTL-TVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALG----VNETLLVAEIYNHQIIRYLEE 529 (882)
Q Consensus 457 sLplp~~~~~~~~v-~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~----~~~~l~~~e~~~~~~~~~~~~ 529 (882)
.|..|.+.--.+-| .|+..|+..+-....|.|+...+..++++.|-+.+.+. ++..+-+.++..+.-.+-+.+
T Consensus 10 ~~s~p~e~lef~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d 87 (112)
T cd01782 10 HLSYPTEDLEFHGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLD 87 (112)
T ss_pred eecCCCcccEEeeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCC
Confidence 35556655433333 46667777777788899999999999999998888743 233555556554443444443
No 125
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=31.00 E-value=2.6e+02 Score=25.27 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=46.9
Q ss_pred EEEEEEeecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceE
Q 002773 150 QLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEI 222 (882)
Q Consensus 150 ~l~l~~~~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~I 222 (882)
.|+|.- .+++.+.+.+.+...++-|.+.-|+.-+++.+.+|+. +.+.. . ....|-.++....+..|
T Consensus 22 ~LKV~g-qd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFl-FdG~r-I----~~~~TP~~L~mEd~D~I 87 (99)
T KOG1769|consen 22 NLKVKG-QDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFL-FDGQR-I----RETHTPADLEMEDGDEI 87 (99)
T ss_pred EEEEec-CCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEE-ECCcC-c----CCCCChhhhCCcCCcEE
Confidence 344433 4567779999999999999999999999999999887 33322 1 12345666666665544
No 126
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=30.13 E-value=77 Score=33.83 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=43.7
Q ss_pred EEEEcccccHHHHHHHHHhHcCCCC-cceEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002773 163 GVKISKKDNAVELFKRACKIFSIES-ELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 227 (882)
Q Consensus 163 ~~~~Sr~~ti~~l~~~v~~~f~i~~-~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~~ 227 (882)
.+.+++.+++.++...+++..+++. ..+.+|.=-.....+.+ +.+.|+..+.+.+|..|..+..
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i-~~~~t~~~~el~~GdIi~fQ~~ 152 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPI-DPNQTFEKAELQDGDIICFQRA 152 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--TTEEEEEEE-
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEc-CCCCchhhcccCCCCEEEEEec
Confidence 4678999999999999999999986 47888864434444445 6678899999999988888865
No 127
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=29.28 E-value=3.5e+02 Score=24.27 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=43.1
Q ss_pred EEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecce
Q 002773 469 TLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQ 522 (882)
Q Consensus 469 ~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~ 522 (882)
.+.+.|.-....++-..|+..|+.+-.+++..+-...++......+++||....
T Consensus 12 ~l~IyP~~~a~~~~~C~v~a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkEsG 65 (105)
T cd01779 12 HLHIYPQLIAESTISCRVTATKDSTAADVIDDVIASLQLDGTKCYVLAEVKESG 65 (105)
T ss_pred EEEEccCCCCCCceEeEeEeccCCcHHHHHHHHHHHhCcCccccEEEEEeeccC
Confidence 334455444455677788999999999999999999999999999999997754
No 128
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=28.46 E-value=2.3e+02 Score=24.11 Aligned_cols=31 Identities=10% Similarity=-0.022 Sum_probs=25.9
Q ss_pred cceEEEeCCCCCHHHHHHHHHHHhcCCCCce
Q 002773 482 SPFTITVPKYGKFEDLIRALSIACALGVNET 512 (882)
Q Consensus 482 ~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 512 (882)
-...+.+....++.+++..+....|++++.+
T Consensus 13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~Q 43 (75)
T cd01799 13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQ 43 (75)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHCcCHHHE
Confidence 3466788889999999999999999987654
No 129
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=27.89 E-value=1.2e+02 Score=32.25 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=28.9
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecC
Q 002773 159 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSG 197 (882)
Q Consensus 159 ~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~ 197 (882)
...+++.+|+..|..+|.+.|-+.++++++.+|+|-...
T Consensus 189 ~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~ 227 (249)
T PF12436_consen 189 DPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNP 227 (249)
T ss_dssp ---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---T
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEecc
Confidence 457899999999999999999999999999999998754
No 130
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=27.44 E-value=1e+02 Score=27.51 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=41.3
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCC
Q 002773 159 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLS 218 (882)
Q Consensus 159 ~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~ 218 (882)
...+.+.....+|+-+|+..+--+..-|.++-|||..... .+|++ .+||.++|+.+
T Consensus 11 kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~e---qlL~D-~ktL~d~gfts 66 (110)
T KOG4495|consen 11 KTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTE---QLLDD-GKTLGDCGFTS 66 (110)
T ss_pred ceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHH---HHhhc-cchhhhccccc
Confidence 3445566678899999998888888888899999965432 34444 67888887654
No 131
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=27.20 E-value=3.4e+02 Score=26.98 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=40.6
Q ss_pred EEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEeccee
Q 002773 470 LTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQI 523 (882)
Q Consensus 470 v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~ 523 (882)
|.+-..+|...|..+.+.++...++.+|...+....++.....+++.-..+..+
T Consensus 3 Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l 56 (162)
T PF13019_consen 3 VLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQL 56 (162)
T ss_pred EEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCee
Confidence 444556777778888889999999999999999999988766555544444444
No 132
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=26.92 E-value=2.8e+02 Score=24.05 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=25.5
Q ss_pred eEEEeCCCCCHHHHHHHHHHHhcCCCCceEE
Q 002773 484 FTITVPKYGKFEDLIRALSIACALGVNETLL 514 (882)
Q Consensus 484 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 514 (882)
.+.++++..++.+|++.+...+|+++..+-+
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL 45 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRL 45 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEE
Confidence 4556899999999999999999998765433
No 133
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=26.23 E-value=2e+02 Score=30.72 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=24.6
Q ss_pred ccCCCcccHHHHHHHHhCChHHHHHHH
Q 002773 285 QNLGNTCFMNSALQCLVHTPKLVDYFL 311 (882)
Q Consensus 285 ~NlGNTCYmNSvLQ~L~~~p~f~~~~l 311 (882)
.|--|-|++-++|=+|.|+..|++..-
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~ 32 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVT 32 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999774
No 134
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=25.88 E-value=2.2e+02 Score=24.66 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=25.3
Q ss_pred cccHHHHHHHHHhHcCCCCcceEEEEecCCc
Q 002773 169 KDNAVELFKRACKIFSIESELLHIWDFSGQT 199 (882)
Q Consensus 169 ~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~ 199 (882)
..++.||+.++|..|+++...++|-...+.+
T Consensus 20 A~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT 50 (78)
T PF02017_consen 20 ASSLEELLEKACDKLQLPEEPVRLVLEEDGT 50 (78)
T ss_dssp ESSHHHHHHHHHHHHT-SSSTCEEEETTTTC
T ss_pred cCCHHHHHHHHHHHhCCCCcCcEEEEeCCCc
Confidence 3789999999999999998888888765544
No 135
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=25.68 E-value=86 Score=31.14 Aligned_cols=31 Identities=35% Similarity=0.595 Sum_probs=21.9
Q ss_pred EEEEEeec-cCCCceEEEEEEc-CCCCEEEEcC
Q 002773 824 YAVSNHYG-SMGGGHYTAFVHH-GGGQWYDFDD 854 (882)
Q Consensus 824 ~aVi~H~G-~l~gGHYtAy~k~-~~~~Wy~fnD 854 (882)
.|+||--| ..||=|+.|++-+ ...+.|.||=
T Consensus 21 cAIVNT~~retGGvHWlA~Aw~P~s~t~YmFDP 53 (183)
T PF00770_consen 21 CAIVNTGGRETGGVHWLAFAWDPRSRTFYMFDP 53 (183)
T ss_dssp EEEEESS-TTT--S-EEEEEEETTTTEEEEE-T
T ss_pred eEEEecCCcccCceeEEEEEecCCcceEEEeCC
Confidence 78999888 7888899999999 5568898873
No 136
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=25.56 E-value=2e+02 Score=23.01 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=23.7
Q ss_pred eEEEeCCCCCHHHHHHHHHHHhcCCCCce
Q 002773 484 FTITVPKYGKFEDLIRALSIACALGVNET 512 (882)
Q Consensus 484 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 512 (882)
+.+.++.+.++.+|++.+.+.+++.....
T Consensus 10 ~~~~~~~~~ti~~lK~~i~~~~~~~~~~~ 38 (69)
T cd01769 10 FELEVSPDDTVAELKAKIAAKEGVPPEQQ 38 (69)
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHE
Confidence 45667788999999999999999876543
No 137
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=25.40 E-value=1.6e+02 Score=25.50 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=26.8
Q ss_pred cccHHHHHHHHHhHcCCCCcceEEEEecCCc
Q 002773 169 KDNAVELFKRACKIFSIESELLHIWDFSGQT 199 (882)
Q Consensus 169 ~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~ 199 (882)
..+++||+.++|+.|+++...++|....+.+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGT 50 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGT 50 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCc
Confidence 5689999999999999998889998776654
No 138
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=25.13 E-value=1.8e+02 Score=24.61 Aligned_cols=54 Identities=13% Similarity=-0.083 Sum_probs=37.7
Q ss_pred cccccHHHHHHHHHhHcCC-CCcceEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002773 167 SKKDNAVELFKRACKIFSI-ESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 224 (882)
Q Consensus 167 Sr~~ti~~l~~~v~~~f~i-~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~Ill 224 (882)
+...|+.+|++.+-+..+. +.+..||+... ....|.+ +++|.+.++..+..|.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~---~g~~L~d-~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEP---KGKSLKD-DDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCC---CCcccCC-cccHhhcCCCCCCEEEE
Confidence 5678999999999888754 67778888443 2234443 45799988887766543
No 139
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=25.08 E-value=2.4e+02 Score=24.63 Aligned_cols=56 Identities=9% Similarity=0.041 Sum_probs=38.1
Q ss_pred eecCCeeEEEEcc--cccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhh
Q 002773 156 MRETNSLGVKISK--KDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDC 214 (882)
Q Consensus 156 ~~~~~~~~~~~Sr--~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~ 214 (882)
..++....+.++. ..+..+|...+.+.|+++ .+.|=-..+.+.+..+..... |+++
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKYlDde~e~v~lssd~e-LeE~ 63 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKYVDEENEEVSVNSQGE-YEEA 63 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEEEcCCCCEEEEEchhh-HHHH
Confidence 3456667788877 779999999999999999 555554444555555543222 5555
No 140
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=24.43 E-value=3e+02 Score=25.03 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=39.1
Q ss_pred cCceeEEEeCCCCceeeEEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCce
Q 002773 451 DPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNET 512 (882)
Q Consensus 451 e~f~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 512 (882)
|....+.++++... .+.+.+-...|. .+.+++....++.++++.++...|++.+..
T Consensus 13 ~~~~~~~~~~~~~~--~M~I~Vk~l~G~----~~~leV~~~~TV~~lK~kI~~~~gip~~~Q 68 (103)
T cd01802 13 DNMGPFHYKLPFYD--TMELFIETLTGT----CFELRVSPFETVISVKAKIQRLEGIPVAQQ 68 (103)
T ss_pred CCcceeEEeeccCC--CEEEEEEcCCCC----EEEEEeCCCCcHHHHHHHHHHHhCCChHHE
Confidence 34445566665443 456666555554 366788999999999999999988876543
No 141
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=22.67 E-value=74 Score=26.37 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=21.8
Q ss_pred CCCCCCcCcceeEEEEEec--ccCCeEEEEEeceEe
Q 002773 752 WYCPGCKKHCQASKKLDLW--RLPEILVIHLKRFSY 785 (882)
Q Consensus 752 w~C~~Ck~~~~A~K~~~i~--~lP~iLiIhLKRF~~ 785 (882)
|.||+|+...-..+.+... -+-.++=|+.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 7899999865555544432 234466777777753
No 142
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=21.93 E-value=5e+02 Score=22.21 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=44.8
Q ss_pred ecCCeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceEEEEE
Q 002773 157 RETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLEL 226 (882)
Q Consensus 157 ~~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~IllE~ 226 (882)
+++....+.+-.-.|++|.+.++.+.-++.++-+.++...+..+....-+++ .+++...+..+.+|+
T Consensus 7 PnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~~~~~~~~~~~i~W~---td~~~L~geEL~V~~ 73 (74)
T cd01816 7 PNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFRLGDGSSKKLRIDWD---TDISSLIGEELQVEV 73 (74)
T ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEEcCCCcccccccchh---hhhhhccCceEEEEe
Confidence 4555667888889999999999999999999999999775433211222221 122333456666664
No 143
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=21.61 E-value=2.4e+02 Score=24.02 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=29.7
Q ss_pred EEEEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCce
Q 002773 468 MTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNET 512 (882)
Q Consensus 468 ~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 512 (882)
+.+++-...|. .+.++++..+++.+|++.+++..++..++.
T Consensus 2 m~I~Vk~~~G~----~~~l~v~~~~TV~~LK~~I~~~~~~~~~~q 42 (78)
T cd01804 2 MNLNIHSTTGT----RFDLSVPPDETVEGLKKRISQRLKVPKERL 42 (78)
T ss_pred eEEEEEECCCC----EEEEEECCcCHHHHHHHHHHHHhCCChHHE
Confidence 34444444443 267888999999999999999888876543
No 144
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=21.53 E-value=2.8e+02 Score=25.79 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=38.1
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcC-------CCCcceEEEEecCCcceeeccCCCccchhhccCC
Q 002773 159 TNSLGVKISKKDNAVELFKRACKIFS-------IESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLS 218 (882)
Q Consensus 159 ~~~~~~~~Sr~~ti~~l~~~v~~~f~-------i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~ 218 (882)
+..-.+.++..+||.+|++++-.... .+.++.||- |.+ .+|++ ++||.++++..
T Consensus 15 ~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLI-ysG----KiLeD-~~TL~d~~~p~ 75 (113)
T cd01814 15 SDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLI-SAG----KILEN-SKTVGECRSPV 75 (113)
T ss_pred CccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEE-eCC----eecCC-CCcHHHhCCcc
Confidence 34556788999999999999987763 335677776 332 35655 57899998443
No 145
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=21.06 E-value=1e+02 Score=30.81 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=23.8
Q ss_pred cccCccEEEEeccccChHHHHHHHHHHcCC
Q 002773 579 NALGIPLVAKVSYLAHGLDIRNLYLELLKP 608 (882)
Q Consensus 579 ~~fg~P~~~~~~~~~~~~~l~~~~~~~l~~ 608 (882)
..||+|||+++... +..+|...+.+++..
T Consensus 110 ~kFGfpFii~v~g~-s~~~IL~~l~~Rl~n 138 (166)
T PRK13798 110 EKFGFVFLICATGR-SADEMLAALQQRLHN 138 (166)
T ss_pred HhCCCeEEEeeCCC-CHHHHHHHHHHHhcC
Confidence 46999999999755 778898888888764
No 146
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=20.99 E-value=1.4e+02 Score=25.47 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=26.7
Q ss_pred cccHHHHHHHHHhHcCCCCcceEEEEecCCc
Q 002773 169 KDNAVELFKRACKIFSIESELLHIWDFSGQT 199 (882)
Q Consensus 169 ~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~ 199 (882)
..++++|+.++|..|+++...++|....+.+
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT 48 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGT 48 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCc
Confidence 5689999999999999998789998776554
No 147
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=20.99 E-value=3.7e+02 Score=22.66 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCceEEEEEEecceeEEcccCCcccccccCCCCcEEE
Q 002773 491 YGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVA 545 (882)
Q Consensus 491 ~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~l~~i~~~d~i~~ 545 (882)
..++++|.+.-++.++.. ...++..+ .. .-+.+..|+|+|.+|+
T Consensus 25 P~SleeLl~ia~~kfg~~-~~~v~~~d--ga--------eIdDI~~IRDgD~L~~ 68 (69)
T PF11834_consen 25 PDSLEELLKIASEKFGFS-ATKVLNED--GA--------EIDDIDVIRDGDHLYL 68 (69)
T ss_pred CccHHHHHHHHHHHhCCC-ceEEEcCC--CC--------EEeEEEEEEcCCEEEE
Confidence 379999999999999885 33222110 00 1134567899998875
No 148
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=20.77 E-value=5.5e+02 Score=22.08 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=49.1
Q ss_pred CeeEEEEcccccHHHHHHHHHhHcCCCCcceEEEEecCCcceeeccCCCccchhhccCCCceE-EEE
Q 002773 160 NSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEI-LLE 225 (882)
Q Consensus 160 ~~~~~~~Sr~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~l~~~~~tL~~~~l~~~q~I-llE 225 (882)
...++.+...++|+.+++++.+..++.. .-||-.........+|.+ ..||.+.++-++-.| |+|
T Consensus 11 ~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s-~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 11 SDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSS-RKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccc-cccHhhhcceeccEEEEEe
Confidence 4467889999999999999999999886 567776665555566655 567999998887555 445
No 149
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=20.58 E-value=1e+02 Score=30.37 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=23.8
Q ss_pred cccCccEEEEeccccChHHHHHHHHHHcCC
Q 002773 579 NALGIPLVAKVSYLAHGLDIRNLYLELLKP 608 (882)
Q Consensus 579 ~~fg~P~~~~~~~~~~~~~l~~~~~~~l~~ 608 (882)
..||+|||+++... +..+|...+.++|..
T Consensus 105 ~kFGfpFvi~v~g~-~~~~Il~~l~~Rl~n 133 (157)
T TIGR03164 105 ARFGFPFIMAVKGK-TKQSILAAFEARLNN 133 (157)
T ss_pred HHCCCeeEEeeCCC-CHHHHHHHHHHHHCC
Confidence 46899999999765 778898888888764
No 150
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=20.55 E-value=2.9e+02 Score=24.08 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=34.3
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCC-cceEEEEecCCcceeec
Q 002773 158 ETNSLGVKISKKDNAVELFKRACKIFSIES-ELLHIWDFSGQTTLYFL 204 (882)
Q Consensus 158 ~~~~~~~~~Sr~~ti~~l~~~v~~~f~i~~-~~~RlW~~~~~~~~~~l 204 (882)
++....+.+....++.+|.+.+++.|++.. ..+.|--..+...+..+
T Consensus 8 ~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~l 55 (82)
T cd06407 8 GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLL 55 (82)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEe
Confidence 445678888889999999999999999975 56666544444444444
No 151
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=20.47 E-value=1.7e+02 Score=23.88 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=27.5
Q ss_pred ceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEE
Q 002773 483 PFTITVPKYGKFEDLIRALSIACALGVNETLLV 515 (882)
Q Consensus 483 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 515 (882)
.+.+.++.+.++.+|++.++...+++....-++
T Consensus 7 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~ 39 (69)
T PF00240_consen 7 TFTLEVDPDDTVADLKQKIAEETGIPPEQQRLI 39 (69)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEE
T ss_pred EEEEEECCCCCHHHhhhhcccccccccccceee
Confidence 467888999999999999999999887654433
No 152
>PF09996 DUF2237: Uncharacterized protein conserved in bacteria (DUF2237); InterPro: IPR018714 This family of hypothetical proteins has no known function.; PDB: 2LQ3_A 3USH_B.
Probab=20.39 E-value=46 Score=30.79 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=15.9
Q ss_pred CCCCCCCEEEEEcchhHHHHHHh
Q 002773 25 NNNDNDQRVYLVPYRWWRDAQES 47 (882)
Q Consensus 25 ~~~~~g~~~ylIs~~W~~~w~~~ 47 (882)
-.|++||+|+|.-.+|-...+..
T Consensus 67 pGLkpGd~WClCa~RW~eA~~ag 89 (117)
T PF09996_consen 67 PGLKPGDRWCLCASRWKEAYEAG 89 (117)
T ss_dssp SS--TT-ECCE-HHHHHHHHHTT
T ss_pred CCCCCCCceEecHHHHHHHHHCC
Confidence 46999999999999998887663
No 153
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=20.34 E-value=2.7e+02 Score=23.01 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=29.1
Q ss_pred EEEEeCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCce
Q 002773 470 LTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNET 512 (882)
Q Consensus 470 v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~ 512 (882)
+.|-..+|.. ..++++...++.+|++.+....+++..+.
T Consensus 3 i~v~~~~g~~----~~~~v~~~~tv~~lK~~i~~~~g~~~~~q 41 (76)
T cd01806 3 IKVKTLTGKE----IEIDIEPTDKVERIKERVEEKEGIPPQQQ 41 (76)
T ss_pred EEEEeCCCCE----EEEEECCCCCHHHHHHHHhHhhCCChhhE
Confidence 4444455543 45678899999999999999999887653
Done!