Query 002773
Match_columns 882
No_of_seqs 307 out of 2174
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 18:02:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002773.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1487-1491//hhsearch_pdb/002773hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 1.0 1 1 673.9 34.2 355 277-880 4-360 (367)
2 2gfo_A Ubiquitin carboxyl-term 1.0 1 1 645.2 28.5 337 277-879 58-396 (396)
3 3nhe_A Ubiquitin carboxyl-term 1.0 1 1 592.0 33.3 339 277-882 5-346 (348)
4 3i3t_A Ubiquitin carboxyl-term 1.0 1 1 587.5 27.4 336 279-881 1-353 (355)
5 2ayn_A Ubiquitin carboxyl-term 1.0 1 1 542.3 21.4 318 278-879 11-394 (404)
6 3mhs_A Ubiquitin carboxyl-term 1.0 1 1 542.1 27.6 315 277-879 137-474 (476)
7 3ihp_A Ubiquitin carboxyl-term 1.0 1 1 538.5 27.1 331 275-880 338-854 (854)
8 1nb8_A Ubiquitin carboxyl-term 1.0 1 1 538.4 25.7 296 278-880 3-316 (353)
9 2f1z_A Ubiquitin carboxyl-term 1.0 1 1 536.8 23.8 298 277-881 171-486 (522)
10 1vjv_A Ubiquitin carboxyl-term 1.0 1 1 517.4 25.3 297 276-879 19-414 (415)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=673.86 Aligned_cols=355 Identities=59% Similarity=1.001 Sum_probs=323.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHH-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 777744321388964178999998187479999971-2322237899999906899999999999619999988939999
Q 002773 277 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLG-DYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFK 355 (882)
Q Consensus 277 ~~~g~~GL~NlGNTCymNS~LQ~L~~~p~l~~~fl~-~~~~~~n~~n~l~~~g~l~~~~~~Ll~~l~~~~~~~i~p~~~k 355 (882)
..+|++||.|+||||||||+||||+|+|+|+++|+. .+..+++..+|+++.+.++.+|+.|+..||.+...+++|..|+
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 89898087648856498999999977799999997372255504469888642999999999999974899873879999
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCEEEE
Q ss_conf 99953099989999888899999999999998321037887534699999918999999997421679841103663999
Q 002773 356 SKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYK 435 (882)
Q Consensus 356 ~~i~~~~~~F~g~~QqDaqEfL~~LLd~Lhedlnri~~kpy~e~~d~dg~~d~~~a~e~w~~~~~rndSiI~dlF~G~~k 435 (882)
..+++.+++|.+++||||||||.+|||.||++++++.++|+++.++.+|.+|.++|.++|.+|..+++|+|.++|+|+++
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 99997404108987878799999999999999875125776445565679606778999999887069823013376884
Q ss_pred EEEECCCCCCEEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 89990899984431047623887189984003799999089999882138980799998999999998823798860999
Q 002773 436 STLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLV 515 (882)
Q Consensus 436 Stl~C~~C~~~SvtfdpF~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 515 (882)
++++|+.|+++|+++|||++|+||||....+.+.+.
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~-------------------------------------------- 199 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGP-------------------------------------------- 199 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-----------------------------------------------------
T ss_pred EEEEECCCCCEEEEECCCEEEEEECCCCCCCCCEEE--------------------------------------------
T ss_conf 358908999985337567057731798767750133--------------------------------------------
Q ss_pred EEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCH
Q ss_conf 99844526871248733233458898199999457899997399984013666513876798722485389996366685
Q 002773 516 AEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHG 595 (882)
Q Consensus 516 ~ei~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 595 (882)
+
T Consensus 200 ----------~--------------------------------------------------------------------- 200 (367)
T 2y6e_A 200 ----------M--------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------E---------------------------------------------------------------------
T ss_conf ----------2---------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 77999999870886568655568876899831343310035532589988788987779999973016874599974465
Q 002773 596 LDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNS 675 (882)
Q Consensus 596 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (882)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 22357543347999714999972511353101112256621102588889999988999999983076767998987797
Q 002773 676 KIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCP 755 (882)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~~CL~~f~~~E~L~~~d~w~C~ 755 (882)
|.+. . .....++|++||+.|+.+|.|+++|.|+|+
T Consensus 201 ----------------------~~~~---------------~--------~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~ 235 (367)
T 2y6e_A 201 ----------------------LQPQ---------------K--------KKKTTVALRDCIELFTTMETLGEHDPWYCP 235 (367)
T ss_dssp ------------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEEET
T ss_pred ----------------------ECCC---------------C--------CCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf ----------------------0564---------------4--------567888899999986161647899872487
Q ss_pred CCCCCCEEEEEEEECCCCCEEEEEEECEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC
Q ss_conf 88675202899983006984899971347404312443225531467888655223357766741659999993011798
Q 002773 756 GCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGG 835 (882)
Q Consensus 756 ~Ck~~~~a~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~YdL~AVinH~G~l~g 835 (882)
+|++++.|+|++.|+++|+||+||||||.|+++.+.|+++.|.||++.|||++|+..+.. .+..|+|+||++|.|++++
T Consensus 236 ~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~~~ 314 (367)
T 2y6e_A 236 NCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA-RPYVYDLIAVSNHYGAMGV 314 (367)
T ss_dssp TTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS-CCCEEEEEEEEEEECSSSS
T ss_pred CCCCCCEEEEEEEEECCCCEEEEEEECEEECCCCCEECCCEEEECCCCCCHHHHCCCCCC-CCCEEEEEEEEECCCCCCC
T ss_conf 878875078998882488578999847650576633537638931776775664258788-9714889988562899988
Q ss_pred CEEEEEEEC-CCCCEEEECCCCCEEECCCCCCCCCCEEEEEEEECC
Q ss_conf 669999991-899899975994113083435799818999898057
Q 002773 836 GHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVE 880 (882)
Q Consensus 836 GHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~~~~AYiLFY~R~~~ 880 (882)
|||+||+|+ .+++||+|||+.|+++++++|.+..||||||+|++.
T Consensus 315 GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 315 GHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDD 360 (367)
T ss_dssp CEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC
T ss_pred CEEEEEEECCCCCEEEEECCCCCEECCHHHCCCCCCEEEEEEECCC
T ss_conf 7366788769999089977987339988886889737999997389
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=1.00 E-value=1 Score=645.24 Aligned_cols=337 Identities=47% Similarity=0.845 Sum_probs=316.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 7777443213889641789999981874799999712-322237899999906899999999999619999988939999
Q 002773 277 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFK 355 (882)
Q Consensus 277 ~~~g~~GL~NlGNTCymNS~LQ~L~~~p~l~~~fl~~-~~~~~n~~n~l~~~g~l~~~~~~Ll~~l~~~~~~~i~p~~~k 355 (882)
..+|++||.|+||||||||+||||+|+|+|++||+.. +..+++..++++..+.++.+|+.|++.||.+...+++|..|+
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHH
T ss_conf 87786665616874167299998537889999997074213312358777410999999999999970998437789999
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCEEEE
Q ss_conf 99953099989999888899999999999998321037887534699999918999999997421679841103663999
Q 002773 356 SKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYK 435 (882)
Q Consensus 356 ~~i~~~~~~F~g~~QqDaqEfL~~LLd~Lhedlnri~~kpy~e~~d~dg~~d~~~a~e~w~~~~~rndSiI~dlF~G~~k 435 (882)
.++++.+++|.+++||||||||.+|||.||+++++..++++.+.++.++.++.+.|+++|..|..++.|+|.++|+|+++
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCEEE
T ss_conf 99997454334878877599999999999999865314554455555566425677899987665068834020086887
Q ss_pred EEEECCCCCCEEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 89990899984431047623887189984003799999089999882138980799998999999998823798860999
Q 002773 436 STLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLV 515 (882)
Q Consensus 436 Stl~C~~C~~~SvtfdpF~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 515 (882)
++++|..|+++|+++|||++|+||||...
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~--------------------------------------------------- 246 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLASTS--------------------------------------------------- 246 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCSS---------------------------------------------------
T ss_pred EEEEECCCCCEECCCCCCEEEEECCCCCC---------------------------------------------------
T ss_conf 77885799962032446312333266346---------------------------------------------------
Q ss_pred EEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCH
Q ss_conf 99844526871248733233458898199999457899997399984013666513876798722485389996366685
Q 002773 516 AEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHG 595 (882)
Q Consensus 516 ~ei~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 595 (882)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 77999999870886568655568876899831343310035532589988788987779999973016874599974465
Q 002773 596 LDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNS 675 (882)
Q Consensus 596 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (882)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 22357543347999714999972511353101112256621102588889999988999999983076767998987797
Q 002773 676 KIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCP 755 (882)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~~CL~~f~~~E~L~~~d~w~C~ 755 (882)
.++|++||+.|+++|.|+++|.|+|+
T Consensus 247 ------------------------------------------------------~~sL~~~L~~f~~~E~l~~~n~~~C~ 272 (396)
T 2gfo_A 247 ------------------------------------------------------KCTLQDCLRLFSKEEKLTDNNRFYCS 272 (396)
T ss_dssp ------------------------------------------------------EEEHHHHHHHHTSCEEECSTTCEEET
T ss_pred ------------------------------------------------------CCCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf ------------------------------------------------------57999999983772251687641157
Q ss_pred CCCCCCEEEEEEEECCCCCEEEEEEECEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC
Q ss_conf 88675202899983006984899971347404312443225531467888655223357766741659999993011798
Q 002773 756 GCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGG 835 (882)
Q Consensus 756 ~Ck~~~~a~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~YdL~AVinH~G~l~g 835 (882)
+|+.++.|+|++.|+++|+||+||||||.|+..++.|+++.|.||++.|||++|+..+.. ....|+|+||++|+|++++
T Consensus 273 ~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~~~ 351 (396)
T 2gfo_A 273 HCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKN-NLKKYNLFSVSNHYGGLDG 351 (396)
T ss_dssp TTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCS-SCCCBEEEEEEEEESCTTT
T ss_pred CCCCCCCEEEEEEEECCCCEEEEEECCEECCCCCCEECCCEEECCHHHCCCCCCCCCCCC-CCCEEEEEEEEEECCCCCC
T ss_conf 755545358999980378579998501102576100167448545342456643347777-8735889999985699999
Q ss_pred CEEEEEEEC-CCCCEEEECCCCCEEECCCCCCCCCCEEEEEEEEC
Q ss_conf 669999991-89989997599411308343579981899989805
Q 002773 836 GHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVV 879 (882)
Q Consensus 836 GHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~~~~AYiLFY~R~~ 879 (882)
|||+||+|+ .+++||.|||+.|+++++++|.+.+||||||+|++
T Consensus 352 GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 352 GHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp CEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred CCEEEEECCCCCCCEEEEECCCEEECCHHHCCCCCCEEEEEEECC
T ss_conf 830799857999987997488738988888689985699999759
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=1.00 E-value=1 Score=592.03 Aligned_cols=339 Identities=43% Similarity=0.772 Sum_probs=309.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHH
Q ss_conf 7777443213889641789999981874799999712-32223789999990689999999999961-999998893999
Q 002773 277 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLW-APGAAPVSPRTF 354 (882)
Q Consensus 277 ~~~g~~GL~NlGNTCymNS~LQ~L~~~p~l~~~fl~~-~~~~~n~~n~l~~~g~l~~~~~~Ll~~l~-~~~~~~i~p~~~ 354 (882)
..+|++||.|+||||||||+||||+|+|+|++++++. +....+. .......++.+|+.|+..|| .+....++|..|
T Consensus 5 ~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~--~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~ 82 (348)
T 3nhe_A 5 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHH--GSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEF 82 (348)
T ss_dssp -CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCS--SCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 899997787588347988999999667999999852446676146--887311899999999999971789872489999
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCEEE
Q ss_conf 99995309998999988889999999999999832103788753469999991899999999742167984110366399
Q 002773 355 KSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQY 434 (882)
Q Consensus 355 k~~i~~~~~~F~g~~QqDaqEfL~~LLd~Lhedlnri~~kpy~e~~d~dg~~d~~~a~e~w~~~~~rndSiI~dlF~G~~ 434 (882)
+..+++..++|.+++||||||||.+|||.||++++++..++.....+.++.++.+.+.+.|..+..+++|+|.++|.|++
T Consensus 83 ~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~ 162 (348)
T 3nhe_A 83 KTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQL 162 (348)
T ss_dssp HHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEE
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 99999860640798744799999999999999875304678877522246882277899999987506984555512499
Q ss_pred EEEEECCCCCCEEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 98999089998443104762388718998400379999908999988213898079999899999999882379886099
Q 002773 435 KSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLL 514 (882)
Q Consensus 435 kStl~C~~C~~~SvtfdpF~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 514 (882)
+++++|..|+++|.++|||+.|+||||....
T Consensus 163 ~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~------------------------------------------------- 193 (348)
T 3nhe_A 163 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGY------------------------------------------------- 193 (348)
T ss_dssp EEEEEETTTCCEEEEEEEESSEEECCCSSCS-------------------------------------------------
T ss_pred EEEEECCCCCCEEEEECCCEEEEEECCCCCC-------------------------------------------------
T ss_conf 9899948999886444465477642798556-------------------------------------------------
Q ss_pred EEEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 99984452687124873323345889819999945789999739998401366651387679872248538999636668
Q 002773 515 VAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAH 594 (882)
Q Consensus 515 ~~ei~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~ 594 (882)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 57799999987088656865556887689983134331003553258998878898777999997301687459997446
Q 002773 595 GLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKN 674 (882)
Q Consensus 595 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (882)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 52235754334799971499997251135310111225662110258888999998899999998307676799898779
Q 002773 675 SKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYC 754 (882)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~~CL~~f~~~E~L~~~d~w~C 754 (882)
..++|++||+.|+.+|.+++++.|+|
T Consensus 194 ------------------------------------------------------~~~sl~~~L~~~~~~e~l~~~~~~~C 219 (348)
T 3nhe_A 194 ------------------------------------------------------PEVTLMDCMRLFTKEDVLDGDEKPTC 219 (348)
T ss_dssp ------------------------------------------------------SCEEHHHHHHHHHSCEEECGGGCCEE
T ss_pred ------------------------------------------------------CCCCHHHHHHHHCCCEEECCCCCEEC
T ss_conf ------------------------------------------------------77789999987468057168885678
Q ss_pred CCCCCCCEEEEEEEECCCCCEEEEEEECEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCC
Q ss_conf 78867520289998300698489997134740431244322553146788865522335776674165999999301179
Q 002773 755 PGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMG 834 (882)
Q Consensus 755 ~~Ck~~~~a~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~YdL~AVinH~G~l~ 834 (882)
++|++++.|+|++.|+++|+||+||||||.++.....|+.+.|.||++.|||++|+.... ....|+|+||++|.|+..
T Consensus 220 ~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~--~~~~Y~L~avv~H~G~~~ 297 (348)
T 3nhe_A 220 CRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT--NHAVYNLYAVSNHSGTTM 297 (348)
T ss_dssp TTTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC--CCCEEEEEEEEEEEECSS
T ss_pred CCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCEEECCCCEECCCCCCCHHHHCCCCC--CCCCEEEEEEEECCCCCC
T ss_conf 888885648999881329865799987534567741456862303477587766067888--998679999997048999
Q ss_pred CCEEEEEEEC-CCCCEEEECCCCCEEECCCCCCCCCCEEEEEEEECCCC
Q ss_conf 8669999991-89989997599411308343579981899989805789
Q 002773 835 GGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVEVS 882 (882)
Q Consensus 835 gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~~~~AYiLFY~R~~~v~ 882 (882)
+|||+||+|+ .+++||.|||+.|+++++++|.+..||||||+|++..+
T Consensus 298 ~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~~~ 346 (348)
T 3nhe_A 298 GGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPS 346 (348)
T ss_dssp CEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC---
T ss_pred CCCCEEEECCCCCCCEEEEECCCCEECCHHHCCCCCCEEEEEEECCCCC
T ss_conf 9643888816998937998389806998888578983699999648777
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=1.00 E-value=1 Score=587.49 Aligned_cols=336 Identities=40% Similarity=0.681 Sum_probs=297.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCHHHHHH
Q ss_conf 77443213889641789999981874799999712-322237899999906899999999999619999-9889399999
Q 002773 279 LGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAPGA-APVSPRTFKS 356 (882)
Q Consensus 279 ~g~~GL~NlGNTCymNS~LQ~L~~~p~l~~~fl~~-~~~~~n~~n~l~~~g~l~~~~~~Ll~~l~~~~~-~~i~p~~~k~ 356 (882)
.|.+||.|+||||||||+||||+|+|+|+++|+.. +....+.. +....++.+|+.|+..||.+.. .+++|..|+.
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~ 77 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVIGALWHPDSCEAVNPTRFRA 77 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHH
T ss_pred CCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCHHHHHCCCC---CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99747588982669899999986789999999725488756789---952699999999999984589887445899999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC---------------CCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9953099989999888899999999999998321037887534---------------6999999189999999974216
Q 002773 357 KLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEA---------------KDGDGRSDEDIADEYWQNHLAR 421 (882)
Q Consensus 357 ~i~~~~~~F~g~~QqDaqEfL~~LLd~Lhedlnri~~kpy~e~---------------~d~dg~~d~~~a~e~w~~~~~r 421 (882)
++++..++|.+++||||||||.+|||.||+++++..+++.... ......++.+.+.+.|..+..+
T Consensus 78 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T 3i3t_A 78 VFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLER 157 (355)
T ss_dssp HHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99973842289876678999999999999997654137875235676667644443223577788788999999985231
Q ss_pred CCCCCEECCCEEEEEEEECCCCCCEEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 79841103663999899908999844310476238871899840037999990899998821389807999989999999
Q 002773 422 NDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRAL 501 (882)
Q Consensus 422 ndSiI~dlF~G~~kStl~C~~C~~~SvtfdpF~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l 501 (882)
++|+|.++|+|+++++++|..|++.|.++|||+.|+||+|....
T Consensus 158 ~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~------------------------------------ 201 (355)
T 3i3t_A 158 EDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGF------------------------------------ 201 (355)
T ss_dssp CCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC---------------------------------------
T ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCEEECCCEEECCCCCCCCC------------------------------------
T ss_conf 69815453357999558938999984022223465256786444------------------------------------
Q ss_pred HHHHCCCCCCEEEEEEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCC
Q ss_conf 98823798860999998445268712487332334588981999994578999973999840136665138767987224
Q 002773 502 SIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNAL 581 (882)
Q Consensus 502 ~~~~~~~~~~~l~~~ei~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 581 (882)
T Consensus 202 -------------------------------------------------------------------------------- 201 (355)
T 3i3t_A 202 -------------------------------------------------------------------------------- 201 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 85389996366685779999998708865686555688768998313433100355325899887889877799999730
Q 002773 582 GIPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAEL 661 (882)
Q Consensus 582 g~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (882)
+
T Consensus 202 --~----------------------------------------------------------------------------- 202 (355)
T 3i3t_A 202 --A----------------------------------------------------------------------------- 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --C-----------------------------------------------------------------------------
T ss_conf --5-----------------------------------------------------------------------------
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 16874599974465223575433479997149999725113531011122566211025888899999889999999830
Q 002773 662 QFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFL 741 (882)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~~CL~~f~ 741 (882)
...++|++||+.|+
T Consensus 203 ------------------------------------------------------------------~~~~sl~~~L~~~~ 216 (355)
T 3i3t_A 203 ------------------------------------------------------------------GGKVSLRDCFNLFT 216 (355)
T ss_dssp ---------------------------------------------------------------------CBHHHHHHHHH
T ss_pred ------------------------------------------------------------------CCCCCHHHHHHHHC
T ss_conf ------------------------------------------------------------------67658999999857
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 76767998987797886752028999830069848999713474043124432255314678886552233577667416
Q 002773 742 TEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRY 821 (882)
Q Consensus 742 ~~E~L~~~d~w~C~~Ck~~~~a~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~Y 821 (882)
++|.++++|.|+|++|++++.|+|++.|+++|+||+||||||.++++...|+.+.|.||++.|||++|+.... ....|
T Consensus 217 ~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~--~~~~Y 294 (355)
T 3i3t_A 217 KEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA--GSPVY 294 (355)
T ss_dssp CCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC------CCEE
T ss_pred CCCCCCCCCCEECCCCCCCCCEEEEEECCCCCHHEEEEHHHEECCCCCCEECCCCEECCCCCCCCHHHCCCCC--CCCCE
T ss_conf 8354589998559887886623799881139813099760200378980478861607765467302115899--99645
Q ss_pred EEEEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCEEECCCCCCCCCCEEEEEEEECCC
Q ss_conf 599999930117986699999918998999759941130834357998189998980578
Q 002773 822 MLYAVSNHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVEV 881 (882)
Q Consensus 822 dL~AVinH~G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~v~~~~v~~~~AYiLFY~R~~~v 881 (882)
+|+||++|.|++++|||+||+|.. ++||.|||+.|+++++++|.+.+||||||+|++..
T Consensus 295 ~L~avv~H~G~~~~GHY~~~~~~~-~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 295 QLYALCNHSGSVHYGHYTALCRCQ-TGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 353 (355)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEET-TEEEEEETTEEEEECHHHHHTSCCSEEEEEEC---
T ss_pred EEEEEEEECCCCCCCEEEEEEECC-CEEEEECCCCCEECCHHHCCCCCCEEEEEEECCCC
T ss_conf 999998826789998079999729-92899819871798899907898679999960688
No 5
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=1.00 E-value=1 Score=542.27 Aligned_cols=318 Identities=25% Similarity=0.348 Sum_probs=270.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 77744321388964178999998187479999971232223789999990689999999999961999998893999999
Q 002773 278 CLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSK 357 (882)
Q Consensus 278 ~~g~~GL~NlGNTCymNS~LQ~L~~~p~l~~~fl~~~~~~~n~~n~l~~~g~l~~~~~~Ll~~l~~~~~~~i~p~~~k~~ 357 (882)
..+++||.|+||||||||+||||+|+|+|+++|+..... .....+.+....++.+|+.|+..||.+. .+++|..|+..
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~ 88 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGA-LRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQF 88 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCC-C------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHH
T ss_conf 699988654770439899999987689999999964510-1347888854389999999999986389-83886999999
Q ss_pred HHHHCCCCC------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCC
Q ss_conf 953099989------99988889999999999999832103788753469999991899999999742167984110366
Q 002773 358 LARFAPQFS------GFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQ 431 (882)
Q Consensus 358 i~~~~~~F~------g~~QqDaqEfL~~LLd~Lhedlnri~~kpy~e~~d~dg~~d~~~a~e~w~~~~~rndSiI~dlF~ 431 (882)
+++..|+|. +++||||||||.+|||.||++++.....+ +..+ -+..+|..+..++.++|.++|+
T Consensus 89 l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~-------~~e~---~~~~~~~~~~~~~~s~i~~~F~ 158 (404)
T 2ayn_A 89 LHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDS-------VKET---DSSSASAATPSKKKSLIDQFFG 158 (404)
T ss_dssp HHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC----------------------------CCHHHHHTC
T ss_pred HHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-------CCCC---CHHHHHHHHCCCCCCHHHHHCC
T ss_conf 98857002023567886654899999999999998744356775-------2210---0122100000113760245156
Q ss_pred EEEEEEEECCCCCCEE--EEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 3999899908999844--31047623887189984003799999089999882138980799998999999998823798
Q 002773 432 GQYKSTLVCPVCKKVS--VTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGV 509 (882)
Q Consensus 432 G~~kStl~C~~C~~~S--vtfdpF~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~ 509 (882)
|+++++++|..|+++| +++|||+.|+||||..
T Consensus 159 G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~---------------------------------------------- 192 (404)
T 2ayn_A 159 VEFETTMKCTESEEEEVTKGKENQLQLSCFINQE---------------------------------------------- 192 (404)
T ss_dssp EEEEEEEEESSSCCCCCBCCEEEESSEEEECSSS----------------------------------------------
T ss_pred EEEEEEEEECCCCCCCCCEEECCCCEEEEECCCC----------------------------------------------
T ss_conf 7999999825789816852422574687656998----------------------------------------------
Q ss_pred CCEEEEEEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 86099999844526871248733233458898199999457899997399984013666513876798722485389996
Q 002773 510 NETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKV 589 (882)
Q Consensus 510 ~~~l~~~ei~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~ 589 (882)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 36668577999999870886568655568876899831343310035532589988788987779999973016874599
Q 002773 590 SYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEK 669 (882)
Q Consensus 590 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (882)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 97446522357543347999714999972511353101112256621102588889999988999999983076767998
Q 002773 670 GIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPE 749 (882)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~~CL~~f~~~E~L~~~ 749 (882)
..+|++||+.|+.+| +.
T Consensus 193 ------------------------------------------------------------~~~l~~~L~~~~~e~-l~-- 209 (404)
T 2ayn_A 193 ------------------------------------------------------------VKYLFTGLKLRLQEE-IT-- 209 (404)
T ss_dssp ------------------------------------------------------------CCBHHHHHHHTTEEC-CC--
T ss_pred ------------------------------------------------------------CCCHHHHHHHHCCCC-EE--
T ss_conf ------------------------------------------------------------542999998754401-03--
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECEEEECC--CCCCCCEEEECCCCCCCCCCCCCCCC-------------
Q ss_conf 987797886752028999830069848999713474043--12443225531467888655223357-------------
Q 002773 750 DMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF--SKNKLETYVDFPVDNLDLSTHVAHLN------------- 814 (882)
Q Consensus 750 d~w~C~~Ck~~~~a~Kk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~~~~~~------------- 814 (882)
|+|+.|++.+.|+|++.|+++|+||+||||||.|+.. .+.|+++.|.||. .|||++|+....
T Consensus 210 --~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~ 286 (404)
T 2ayn_A 210 --KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPL-MLDMYELCTPELQEKMVSFRSKFKD 286 (404)
T ss_dssp --CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCS-EEECGGGBCHHHHHHTTTTTGGGTC
T ss_pred --ECCHHHCCCCCEEEEEEHHHCCCCEEEEEEEEEEECCCCCEECCCCEECCCC-EEEHHHHCCHHHHHHCCHHHHHHHH
T ss_conf --6252009830155553172199716999998898246683100174464682-5677674485554102013567765
Q ss_pred -----------------------------------CCCCCEEEEEEEEEEEC-CCCCCEEEEEEECCCCCEEEECCCCCE
Q ss_conf -----------------------------------76674165999999301-179866999999189989997599411
Q 002773 815 -----------------------------------DKLSNRYMLYAVSNHYG-SMGGGHYTAFVHHGGGQWYDFDDSHVY 858 (882)
Q Consensus 815 -----------------------------------~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~~~~~Wy~fnDs~Vs 858 (882)
......|+|+||++|.| ++.+|||+||+|+.+++||+|||+.|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~ 366 (404)
T 2ayn_A 287 LEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVS 366 (404)
T ss_dssp TTC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCC
T ss_pred HHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCE
T ss_conf 53154013331103355555533345555545557688853999999995489999988699998999928996063456
Q ss_pred EECCCCCCCCC-------CEEEEEEEEC
Q ss_conf 30834357998-------1899989805
Q 002773 859 PISQDKIKTSA-------AYVLFYRRVV 879 (882)
Q Consensus 859 ~v~~~~v~~~~-------AYiLFY~R~~ 879 (882)
++++++|.... ||||||+|++
T Consensus 367 ~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 394 (404)
T 2ayn_A 367 IVTPEDILRLSGGGDWHIAYVLLYGPRR 394 (404)
T ss_dssp CBCHHHHGGGGSSSSSCEEEEEEEECC-
T ss_pred ECCHHHHHHHHCCCCCCEEEEEEEEECC
T ss_conf 6679999763079977628999998347
No 6
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=1.00 E-value=1 Score=542.08 Aligned_cols=315 Identities=30% Similarity=0.589 Sum_probs=269.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC---------
Q ss_conf 777744321388964178999998187479999971232-2237899999906899999999999619999---------
Q 002773 277 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYF-REINHDNPLGMDGEIALAFGDLLRKLWAPGA--------- 346 (882)
Q Consensus 277 ~~~g~~GL~NlGNTCymNS~LQ~L~~~p~l~~~fl~~~~-~~~n~~n~l~~~g~l~~~~~~Ll~~l~~~~~--------- 346 (882)
..+|++||.|+||||||||+||||+|+|+|+++|+.... ...+..+| ...+..++..++..||....
T Consensus 137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~---~~~l~~~l~~l~~~l~~~~~~~~~~~~~~ 213 (476)
T 3mhs_A 137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSP---DKCFSCALDKIVHELYGALNTKQASSSST 213 (476)
T ss_dssp GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCT---TTCHHHHHHHHHHHHHSCCCC--------
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCCCCC---CCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 788997877088467998999998678999999874503554457886---41058999999999961203333456665
Q ss_pred CCCCHHHHHHHHH---HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9889399999995---3099989999888899999999999998321037887534699999918999999997421679
Q 002773 347 APVSPRTFKSKLA---RFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARND 423 (882)
Q Consensus 347 ~~i~p~~~k~~i~---~~~~~F~g~~QqDaqEfL~~LLd~Lhedlnri~~kpy~e~~d~dg~~d~~~a~e~w~~~~~rnd 423 (882)
..+.|..++..+. +.+++|.+++||||||||.+|||.||++++....+. .+.+.....++.
T Consensus 214 ~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~----------------~~~~~~~~~~~~ 277 (476)
T 3mhs_A 214 STNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNA----------------KEVSRANNKQCE 277 (476)
T ss_dssp CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-----------------------CCCSCC
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC----------------CCCCCCCCCCCC
T ss_conf 5657500899999988745123888775999999999999999976415665----------------334544556688
Q ss_pred CCCEECCCEEEEEEEECCCCCCEE-EEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 841103663999899908999844-3104762388718998400379999908999988213898079999899999999
Q 002773 424 SIIVDLCQGQYKSTLVCPVCKKVS-VTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALS 502 (882)
Q Consensus 424 SiI~dlF~G~~kStl~C~~C~~~S-vtfdpF~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~ 502 (882)
|+|.++|+|+++++++|+.|+++| +++|||+.|+||||.
T Consensus 278 s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~---------------------------------------- 317 (476)
T 3mhs_A 278 CIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD---------------------------------------- 317 (476)
T ss_dssp SHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTT----------------------------------------
T ss_pred CCCEEECCEEEEEEEEECCCCCEECCCCCCHHHHCCCHHH----------------------------------------
T ss_conf 8002113259998899899998517865666661320124----------------------------------------
Q ss_pred HHHCCCCCCEEEEEEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCC
Q ss_conf 88237988609999984452687124873323345889819999945789999739998401366651387679872248
Q 002773 503 IACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALG 582 (882)
Q Consensus 503 ~~~~~~~~~~l~~~ei~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg 582 (882)
T Consensus 318 -------------------------------------------------------------------------------- 317 (476)
T 3mhs_A 318 -------------------------------------------------------------------------------- 317 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 53899963666857799999987088656865556887689983134331003553258998878898777999997301
Q 002773 583 IPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQ 662 (882)
Q Consensus 583 ~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (882)
T Consensus 318 -------------------------------------------------------------------------------- 317 (476)
T 3mhs_A 318 -------------------------------------------------------------------------------- 317 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 68745999744652235754334799971499997251135310111225662110258888999998899999998307
Q 002773 663 FYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLT 742 (882)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~~CL~~f~~ 742 (882)
..+|++||+.|++
T Consensus 318 -------------------------------------------------------------------~~sl~~~L~~~~~ 330 (476)
T 3mhs_A 318 -------------------------------------------------------------------KKKLYECLDSFHK 330 (476)
T ss_dssp -------------------------------------------------------------------CCBHHHHHHHHHC
T ss_pred -------------------------------------------------------------------HHHHHHHHHHHCC
T ss_conf -------------------------------------------------------------------6689999998638
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECEEEE-CCCCCCCCEEEECCCCCCCCCCCCCCCCC------
Q ss_conf 67679989877978867520289998300698489997134740-43124432255314678886552233577------
Q 002773 743 EEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYS-RFSKNKLETYVDFPVDNLDLSTHVAHLND------ 815 (882)
Q Consensus 743 ~E~L~~~d~w~C~~Ck~~~~a~Kk~~i~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~~~~~~~------ 815 (882)
+|.+++++ |+|++|+..+.|+|++.|+++|+||+||||||.++ .+...|+++.|.|| +.|||++|+.....
T Consensus 331 ~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP-~~Ldl~~~~~~~~~~~~~~~ 408 (476)
T 3mhs_A 331 KEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFP-TYLNMKNYCSTKEKDKHSEN 408 (476)
T ss_dssp CEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCC-SEEECGGGBSCCBCCC--CC
T ss_pred HHHCCCCC-CCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCEEECCC-CEEECHHHCCCCCCCCCCCC
T ss_conf 42214778-76886688565789987014971139984402154899717898787389-70003432375323432234
Q ss_pred --CCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCEEECCCCCCCCCCEEEEEEEEC
Q ss_conf --6674165999999301179866999999189989997599411308343579981899989805
Q 002773 816 --KLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVV 879 (882)
Q Consensus 816 --~~~~~YdL~AVinH~G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~v~~~~v~~~~AYiLFY~R~~ 879 (882)
.....|+|+||++|.|++++|||+||+|..+++||.|||+.|+++++++|.++.||||||+|++
T Consensus 409 ~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 409 GKVPDIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp CBCCCEEEEEEEEEEEEECSSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCEEECCHHHHCCCCCEEEEEEEEC
T ss_conf 678997389999999689998875499998898918999498158999899566986799999843
No 7
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=538.47 Aligned_cols=331 Identities=24% Similarity=0.421 Sum_probs=264.5
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---------
Q ss_conf 87777744321388964178999998187479999971232223789999990689999999999961999---------
Q 002773 275 EAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPG--------- 345 (882)
Q Consensus 275 ~~~~~g~~GL~NlGNTCymNS~LQ~L~~~p~l~~~fl~~~~~~~n~~n~l~~~g~l~~~~~~Ll~~l~~~~--------- 345 (882)
+...+|++||.|+||||||||+||||+|+|+|+++|+..... ....++....+.++.+|+.|+..||++.
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~-~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~ 416 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEK-IFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESG 416 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHH-HHHHCCSCGGGCHHHHHHHHHHHHHSCC---------
T ss_pred CCCCCCCCCEEECCCCEEHHHHHHHHHCCHHHHHHHHHHHHH-HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 456788655176677620337999985729999999854344-3025667854118899999999874566454442112
Q ss_pred -----------CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -----------998893999999953099989999888899999999999998321037887534699999918999999
Q 002773 346 -----------AAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEY 414 (882)
Q Consensus 346 -----------~~~i~p~~~k~~i~~~~~~F~g~~QqDaqEfL~~LLd~Lhedlnri~~kpy~e~~d~dg~~d~~~a~e~ 414 (882)
..+++|..|+..+++.+++|.+++||||||||.+|||.||++++
T Consensus 417 ~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~------------------------- 471 (854)
T 3ihp_A 417 DGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCR------------------------- 471 (854)
T ss_dssp ------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCT-------------------------
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC-------------------------
T ss_conf 2223333346777548199999986403311214433789999999999998736-------------------------
Q ss_pred HHHHHCCCCCCCEECCCEEEEEEEECCCCCCEEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCH
Q ss_conf 99742167984110366399989990899984431047623887189984003799999089999882138980799998
Q 002773 415 WQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKF 494 (882)
Q Consensus 415 w~~~~~rndSiI~dlF~G~~kStl~C~~C~~~SvtfdpF~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~ 494 (882)
..++|.++|+|+++++++|..|+++|.+++||++|+||||.... ...
T Consensus 472 -------~~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~--------------------------~~~ 518 (854)
T 3ihp_A 472 -------SSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAA--------------------------LNK 518 (854)
T ss_dssp -------TSCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGC--------------------------TTH
T ss_pred -------CCCCCHHHCCCEEEEEEEECCCCCEEEEEEECEEEEEECCCCCC--------------------------CCC
T ss_conf -------56882221073588999964899776776306478845786323--------------------------442
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCC
Q ss_conf 99999999882379886099999844526871248733233458898199999457899997399984013666513876
Q 002773 495 EDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKL 574 (882)
Q Consensus 495 ~~l~~~l~~~~~~~~~~~l~~~ei~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (882)
.++..
T Consensus 519 ~~~~~--------------------------------------------------------------------------- 523 (854)
T 3ihp_A 519 EELLE--------------------------------------------------------------------------- 523 (854)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred CCHHH---------------------------------------------------------------------------
T ss_conf 10001---------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79872248538999636668577999999870886568655568876899831343310035532589988788987779
Q 002773 575 TSCPNALGIPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVE 654 (882)
Q Consensus 575 ~~~~~~fg~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (882)
|..... . ... .+
T Consensus 524 ------------------------~~~~~~--------~-~~~------------------------~g----------- 535 (854)
T 3ihp_A 524 ------------------------YEEKKR--------Q-AEE------------------------EK----------- 535 (854)
T ss_dssp ------------------------HHHHHH--------H-HHH------------------------TT-----------
T ss_pred ------------------------HCCCCC--------C-CCC------------------------CC-----------
T ss_conf ------------------------001111--------0-002------------------------35-----------
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99997301687459997446522357543347999714999972511353101112256621102588889999988999
Q 002773 655 PPSDAELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLY 734 (882)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~ 734 (882)
. ..++ .....++|+
T Consensus 536 ---------------------------~------------------------------~~~~---------~~~~~~sL~ 549 (854)
T 3ihp_A 536 ---------------------------M------------------------------ALPE---------LVRAQVPFS 549 (854)
T ss_dssp ---------------------------C------------------------------CCCC---------CCCEECCHH
T ss_pred ---------------------------C------------------------------CCCC---------CCCCCCCHH
T ss_conf ---------------------------5------------------------------4432---------456777799
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECEEEE-CCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 9999830767679989877978867520289998300698489997134740-431244322553146788865522335
Q 002773 735 KCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYS-RFSKNKLETYVDFPVDNLDLSTHVAHL 813 (882)
Q Consensus 735 ~CL~~f~~~E~L~~~d~w~C~~Ck~~~~a~Kk~~i~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~~~~~ 813 (882)
+||+.|+.+|.|++ |+|++|+.++.|+|++.|+++|+||+||||||.|+ .+...|+++.|.|| +.|||++|+...
T Consensus 550 dcL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP-~~LDl~~y~~~~ 625 (854)
T 3ihp_A 550 SCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMP-EELDISQLRGTG 625 (854)
T ss_dssp HHHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCC-SEEECGGGBCCC
T ss_pred HHHHHHCCCEEEEE---EECCCCCCCCEEEEEEEEEECCCEEEEEEEHHEECCCCCEEECCEEEECC-CCEEHHHHCCCC
T ss_conf 99998558407533---10355687300538888212896679994531356777327788698568-807068850678
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 002773 814 N------------------------------------------------------------------------------- 814 (882)
Q Consensus 814 ~------------------------------------------------------------------------------- 814 (882)
.
T Consensus 626 ~q~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~ 705 (854)
T 3ihp_A 626 LQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPG 705 (854)
T ss_dssp SCTTCCBCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC-
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 89872121335665556554456676889999998648977888888863179856777677764167633246555666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 002773 815 -------------------------------------------------------------------------------- 814 (882)
Q Consensus 815 -------------------------------------------------------------------------------- 814 (882)
T Consensus 706 ~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (854)
T 3ihp_A 706 SSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVP 785 (854)
T ss_dssp -------------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC----------------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66666655556889989999999828878899999986057387777764068443343210012222334565434455
Q ss_pred -----CCCCCEEEEEEEEEEEC-CCCCCEEEEEEECCCCCEEEECCCCCEEECCCCCCCCCCEEEEEEEECC
Q ss_conf -----76674165999999301-1798669999991899899975994113083435799818999898057
Q 002773 815 -----DKLSNRYMLYAVSNHYG-SMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVE 880 (882)
Q Consensus 815 -----~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~v~~~~v~~~~AYiLFY~R~~~ 880 (882)
...+..|+|+||++|.| ++.+||||||+|. +++||+|||+.|+++ ++.....||||||+|+++
T Consensus 786 ~~~~~~~~~~~Y~L~avi~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~s 854 (854)
T 3ihp_A 786 VGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKK-EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVAS 854 (854)
T ss_dssp --CCCCCCCSEEEEEEEEEEESSCSSCCEEEEEEEE-TTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC-
T ss_pred CCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEE-CCEEEEEECCEEEEC--CCCCCCCCEEEEEEECCC
T ss_conf 557888898459999999964489997282999975-998999977715871--466778516999995689
No 8
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=1.00 E-value=1 Score=538.36 Aligned_cols=296 Identities=26% Similarity=0.439 Sum_probs=258.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 77744321388964178999998187479999971232223789999990689999999999961999998893999999
Q 002773 278 CLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSK 357 (882)
Q Consensus 278 ~~g~~GL~NlGNTCymNS~LQ~L~~~p~l~~~fl~~~~~~~n~~n~l~~~g~l~~~~~~Ll~~l~~~~~~~i~p~~~k~~ 357 (882)
.+|++||.|+||||||||+||||+|+|+|+++|+...... . .....+..+++.|+..||.+. .++.|..|+..
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~---~---~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~ 75 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG---D---DSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 75 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT---S---CTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCC---C---CCCCCHHHHHHHHHHHHHHCC-CCCCCHHHHHH
T ss_conf 8899875647454498999999977799999998378777---7---654409999999999886058-87787799864
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCEEEEEE
Q ss_conf 95309998999988889999999999999832103788753469999991899999999742167984110366399989
Q 002773 358 LARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKST 437 (882)
Q Consensus 358 i~~~~~~F~g~~QqDaqEfL~~LLd~Lhedlnri~~kpy~e~~d~dg~~d~~~a~e~w~~~~~rndSiI~dlF~G~~kSt 437 (882)
++. +.|.+++||||||||.+|||.||++++. ..+.++|.++|+|+++++
T Consensus 76 ~~~--~~~~~~~QqDA~EFl~~LLd~L~~~~~~-----------------------------~~~~s~i~~~F~g~~~~~ 124 (353)
T 1nb8_A 76 FGW--ETLDSFMQHDVQELCRVLLDNVENKMKG-----------------------------TCVEGTIPKLFRGKMVSY 124 (353)
T ss_dssp HTC--CBTTTTTTSCHHHHHHHHHHHHHHHTTT-----------------------------STTTTHHHHHHCEEEEEE
T ss_pred CCC--CCCCCCCCHHHHHHHHHHHHHHHHHHCC-----------------------------CCCCCHHHHHCEEEEEEE
T ss_conf 188--7778653263999999999999988448-----------------------------875551235030589999
Q ss_pred EECCCCCCEEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 99089998443104762388718998400379999908999988213898079999899999999882379886099999
Q 002773 438 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 517 (882)
Q Consensus 438 l~C~~C~~~SvtfdpF~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 517 (882)
++|..|++.|.++|||++|+||||..
T Consensus 125 i~C~~C~~~s~~~e~f~~LsL~i~~~------------------------------------------------------ 150 (353)
T 1nb8_A 125 IQCKEVDYRSDRREDYYDIQLSIKGK------------------------------------------------------ 150 (353)
T ss_dssp EEESSSCCEEEEEEEESCEEECCTTC------------------------------------------------------
T ss_pred EEECCCCCEECEEEEEEEEEEEECCC------------------------------------------------------
T ss_conf 99256897002222327998897997------------------------------------------------------
Q ss_pred EECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 84452687124873323345889819999945789999739998401366651387679872248538999636668577
Q 002773 518 IYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLD 597 (882)
Q Consensus 518 i~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 597 (882)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 99999987088656865556887689983134331003553258998878898777999997301687459997446522
Q 002773 598 IRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKI 677 (882)
Q Consensus 598 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (882)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 35754334799971499997251135310111225662110258888999998899999998307676799898779788
Q 002773 678 VMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGC 757 (882)
Q Consensus 678 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~~CL~~f~~~E~L~~~d~w~C~~C 757 (882)
.+|.+||+.|+.+|.|++++.|+|+.|
T Consensus 151 -----------------------------------------------------~~l~~~L~~~~~~E~l~~~~~~~C~~c 177 (353)
T 1nb8_A 151 -----------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEH 177 (353)
T ss_dssp -----------------------------------------------------SBHHHHHHHHTCCEEECTTTCEECGGG
T ss_pred -----------------------------------------------------CCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf -----------------------------------------------------645779998517342478753147767
Q ss_pred CCCCEEEEEEEECCCCCEEEEEEECEEEEC--CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC
Q ss_conf 675202899983006984899971347404--312443225531467888655223357766741659999993011798
Q 002773 758 KKHCQASKKLDLWRLPEILVIHLKRFSYSR--FSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGG 835 (882)
Q Consensus 758 k~~~~a~Kk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~YdL~AVinH~G~l~g 835 (882)
+ ++.|+|++.|+++|+||+||||||.|+. +.+.|+++.|.|| +.|||++|+.......+..|+|+||++|.|++++
T Consensus 178 ~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~ 255 (353)
T 1nb8_A 178 G-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHG 255 (353)
T ss_dssp C-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEESSTTC
T ss_pred C-CEEEEEEEEHHCCCCCEEEEEECEEEECCCCCEEECCCEEECC-CEEEHHHHHCCCCCCCCCEEEEEEEEEEECCCCC
T ss_conf 5-1756898884009972599983679842359507558289779-7665235221337899815999999997478988
Q ss_pred CEEEEEEEC-CCCCEEEECCCCCEEECCCCCC---------------CCCCEEEEEEEECC
Q ss_conf 669999991-8998999759941130834357---------------99818999898057
Q 002773 836 GHYTAFVHH-GGGQWYDFDDSHVYPISQDKIK---------------TSAAYVLFYRRVVE 880 (882)
Q Consensus 836 GHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~---------------~~~AYiLFY~R~~~ 880 (882)
|||+||+|+ .+++||.|||+.|+++++++|. +.+||||||+|++.
T Consensus 256 GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 256 GHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (353)
T ss_dssp CCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTT
T ss_pred CEEEEEEECCCCCCEEEEECCCEEECCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCH
T ss_conf 6799999459999889998960289788999887238976544467688079999998853
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=536.81 Aligned_cols=298 Identities=26% Similarity=0.425 Sum_probs=258.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 77774432138896417899999818747999997123222378999999068999999999996199999889399999
Q 002773 277 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKS 356 (882)
Q Consensus 277 ~~~g~~GL~NlGNTCymNS~LQ~L~~~p~l~~~fl~~~~~~~n~~n~l~~~g~l~~~~~~Ll~~l~~~~~~~i~p~~~k~ 356 (882)
..+|++||.|+||||||||+||||+|+|+|+++++...... ......++.+++.|+..||.+. .++.|..|+.
T Consensus 171 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~ 243 (522)
T 2f1z_A 171 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTK 243 (522)
T ss_dssp TTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS------SCTTTCHHHHHHHHHHHHHHCS-SCBCCTTHHH
T ss_pred CCCCCCCEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHCCC-CCCCCHHHHH
T ss_conf 56785441138631888899999861299999996066567------7656528999999999986379-8557678886
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCEEEEE
Q ss_conf 99530999899998888999999999999983210378875346999999189999999974216798411036639998
Q 002773 357 KLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKS 436 (882)
Q Consensus 357 ~i~~~~~~F~g~~QqDaqEfL~~LLd~Lhedlnri~~kpy~e~~d~dg~~d~~~a~e~w~~~~~rndSiI~dlF~G~~kS 436 (882)
.++ .+.|.+++||||||||.+|||.||++++.. .+.++|.++|+|++++
T Consensus 244 ~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------------------------~~~s~i~~lF~G~~~s 292 (522)
T 2f1z_A 244 SFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVS 292 (522)
T ss_dssp HTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------------------------TTTTHHHHHHCEEEEE
T ss_pred HCC--CCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-----------------------------CCCCCHHHHEEEEEEE
T ss_conf 418--765787626469999999999998641588-----------------------------6566021313379999
Q ss_pred EEECCCCCCEEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 99908999844310476238871899840037999990899998821389807999989999999988237988609999
Q 002773 437 TLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVA 516 (882)
Q Consensus 437 tl~C~~C~~~SvtfdpF~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 516 (882)
+++|..|++.|.++|||++|+||||..
T Consensus 293 ~i~C~~C~~~s~~~e~f~~LsL~i~~~----------------------------------------------------- 319 (522)
T 2f1z_A 293 YIQCKEVDYRSDRREDYYDIQLSIKGK----------------------------------------------------- 319 (522)
T ss_dssp EECCSSSCCCCCEEEEESCEEECCTTC-----------------------------------------------------
T ss_pred EEECCCCCCEEEEEEEEEEEEEEECCC-----------------------------------------------------
T ss_conf 887278995553663207898884786-----------------------------------------------------
Q ss_pred EEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 98445268712487332334588981999994578999973999840136665138767987224853899963666857
Q 002773 517 EIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGL 596 (882)
Q Consensus 517 ei~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~ 596 (882)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 79999998708865686555688768998313433100355325899887889877799999730168745999744652
Q 002773 597 DIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSK 676 (882)
Q Consensus 597 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (882)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 23575433479997149999725113531011122566211025888899999889999999830767679989877978
Q 002773 677 IVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPG 756 (882)
Q Consensus 677 ~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~~CL~~f~~~E~L~~~d~w~C~~ 756 (882)
.+|.+||+.|+.+|.|++++.|+|+.
T Consensus 320 ------------------------------------------------------~~l~~~L~~~~~~E~l~~~n~~~C~~ 345 (522)
T 2f1z_A 320 ------------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGE 345 (522)
T ss_dssp ------------------------------------------------------CBHHHHHHHHTCEEEECTTSCBCCGG
T ss_pred ------------------------------------------------------CCCHHHHHHHHCEEECCCCCEEECCC
T ss_conf ------------------------------------------------------44067998740502227762040476
Q ss_pred CCCCCEEEEEEEECCCCCEEEEEEECEEEEC--CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCC
Q ss_conf 8675202899983006984899971347404--31244322553146788865522335776674165999999301179
Q 002773 757 CKKHCQASKKLDLWRLPEILVIHLKRFSYSR--FSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMG 834 (882)
Q Consensus 757 Ck~~~~a~Kk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~YdL~AVinH~G~l~ 834 (882)
|+ ++.|+|++.|+++|+||+||||||.|+. ....|+++.|.|| ..|||++|+.......+..|+|+||++|.|++.
T Consensus 346 c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~ 423 (522)
T 2f1z_A 346 HG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNH 423 (522)
T ss_dssp GC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEECSSS
T ss_pred CC-CCCEEEEEEEECCCCEEEEEEEEEEECCCCCCCEECCCEEECC-CEECCHHHHCCCCCCCCCEEEEEEEEEECCCCC
T ss_conf 77-6536799993419963899987478816678526768279678-813443540544689983799999999645699
Q ss_pred CCEEEEEEEC-CCCCEEEECCCCCEEECCCCCCC---------------CCCEEEEEEEECCC
Q ss_conf 8669999991-89989997599411308343579---------------98189998980578
Q 002773 835 GGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKT---------------SAAYVLFYRRVVEV 881 (882)
Q Consensus 835 gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~~---------------~~AYiLFY~R~~~v 881 (882)
+|||+||+|+ .+++||+|||+.|+++++++|.. .+||||||+|++.+
T Consensus 424 ~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~ 486 (522)
T 2f1z_A 424 GGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 486 (522)
T ss_dssp CSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTSH
T ss_pred CCEEEEEEECCCCCCEEEEECCEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCH
T ss_conf 866899994389998999978324899899998863388754334576893499999988825
No 10
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=1.00 E-value=1 Score=517.43 Aligned_cols=297 Identities=25% Similarity=0.348 Sum_probs=257.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC----CCHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 77777443213889641789999981874799999712322237899999----90689999999999961999998893
Q 002773 276 AGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLG----MDGEIALAFGDLLRKLWAPGAAPVSP 351 (882)
Q Consensus 276 ~~~~g~~GL~NlGNTCymNS~LQ~L~~~p~l~~~fl~~~~~~~n~~n~l~----~~g~l~~~~~~Ll~~l~~~~~~~i~p 351 (882)
....+++||.|+||||||||+||||+|+|+|+++|+..... .+..++.+ ....++.+|+.|+..||.+...+++|
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p 97 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPS-QGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP 97 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGG-GCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 35789888773885139999999997479999999712654-46677643344411389999999999986079984377
Q ss_pred HHHHHHHHHHCCCCC-------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999953099989-------9998888999999999999983210378875346999999189999999974216798
Q 002773 352 RTFKSKLARFAPQFS-------GFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDS 424 (882)
Q Consensus 352 ~~~k~~i~~~~~~F~-------g~~QqDaqEfL~~LLd~Lhedlnri~~kpy~e~~d~dg~~d~~~a~e~w~~~~~rndS 424 (882)
..|+..++...|+|. +++||||||||.+|||.||++++. +
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------------------------~ 144 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------------------------K 144 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------------------------H
T ss_pred HHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC---------------------------------C
T ss_conf 9999999875850210466777766668999999999999987343---------------------------------4
Q ss_pred CCEECCCEEEEEEEECCCCCCEE--EEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 41103663999899908999844--3104762388718998400379999908999988213898079999899999999
Q 002773 425 IIVDLCQGQYKSTLVCPVCKKVS--VTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALS 502 (882)
Q Consensus 425 iI~dlF~G~~kStl~C~~C~~~S--vtfdpF~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~ 502 (882)
+|.++|+ +++++++|..|+++| .++|||+.|+||||..
T Consensus 145 ~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~--------------------------------------- 184 (415)
T 1vjv_A 145 FSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGT--------------------------------------- 184 (415)
T ss_dssp HHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTT---------------------------------------
T ss_pred HHHHHHH-HHEEEEEECCCCCCCCCCCCCCCEEEEECCCCC---------------------------------------
T ss_conf 6999998-611799977999874631354543665125666---------------------------------------
Q ss_pred HHHCCCCCCEEEEEEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCC
Q ss_conf 88237988609999984452687124873323345889819999945789999739998401366651387679872248
Q 002773 503 IACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALG 582 (882)
Q Consensus 503 ~~~~~~~~~~l~~~ei~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg 582 (882)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 53899963666857799999987088656865556887689983134331003553258998878898777999997301
Q 002773 583 IPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQ 662 (882)
Q Consensus 583 ~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (882)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 68745999744652235754334799971499997251135310111225662110258888999998899999998307
Q 002773 663 FYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLT 742 (882)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~~CL~~f~~ 742 (882)
..+|++||+.|+.
T Consensus 185 -------------------------------------------------------------------~~~l~~~L~~~~~ 197 (415)
T 1vjv_A 185 -------------------------------------------------------------------TNFMRNGLLEGLN 197 (415)
T ss_dssp -------------------------------------------------------------------CCBHHHHHHHHHE
T ss_pred -------------------------------------------------------------------CCHHHHHHHHHHH
T ss_conf -------------------------------------------------------------------1238999998744
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECEEEECC--CCCCCCEEEECCCCCCCCCCCCCCCC------
Q ss_conf 6767998987797886752028999830069848999713474043--12443225531467888655223357------
Q 002773 743 EEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF--SKNKLETYVDFPVDNLDLSTHVAHLN------ 814 (882)
Q Consensus 743 ~E~L~~~d~w~C~~Ck~~~~a~Kk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~~~~~~------ 814 (882)
+| +. |+|+.|+..+.|+|++.|+++|+||+||||||.|+.. .+.|+++.|.||. .|||++|+....
T Consensus 198 e~-i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~-~Ldl~~~~~~~~~~~~~~ 271 (415)
T 1vjv_A 198 EK-IE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPF-QLDVADMLTPEYAAEKVK 271 (415)
T ss_dssp EC--------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCS-EEECGGGBCHHHHHHHHH
T ss_pred HH-HH----HCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEECCCCCCHHHCCCCCCCC-EEEHHHHCCHHHHHHHHH
T ss_conf 55-53----1461217864278887702699715999988998378884043167647995-767678428333222121
Q ss_pred --------------------------------------------------------------------CCCCCEEEEEEE
Q ss_conf --------------------------------------------------------------------766741659999
Q 002773 815 --------------------------------------------------------------------DKLSNRYMLYAV 826 (882)
Q Consensus 815 --------------------------------------------------------------------~~~~~~YdL~AV 826 (882)
......|+|+||
T Consensus 272 ~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aV 351 (415)
T 1vjv_A 272 VRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGV 351 (415)
T ss_dssp HHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 57999987533334566553102255544443453102220125677655443332053334323235678843889999
Q ss_pred EEEEC-CCCCCEEEEEEEC--CCCCEEEECCCCCEEECCCCCCCCC-------CEEEEEEEEC
Q ss_conf 99301-1798669999991--8998999759941130834357998-------1899989805
Q 002773 827 SNHYG-SMGGGHYTAFVHH--GGGQWYDFDDSHVYPISQDKIKTSA-------AYVLFYRRVV 879 (882)
Q Consensus 827 inH~G-~l~gGHYtAy~k~--~~~~Wy~fnDs~Vs~v~~~~v~~~~-------AYiLFY~R~~ 879 (882)
++|.| ++.+|||+||+|+ .+++||+|||+.|+++++++|.... ||||||+|++
T Consensus 352 v~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 352 ITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp EEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred EEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCEECCHHHHHHHCCCCCCCEEEEEEEEECC
T ss_conf 993589999988799994788899489967885767279997642079876607999999547
Done!