Query 002774
Match_columns 882
No_of_seqs 584 out of 5884
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 18:23:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002774.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1487-1491//hhsearch_pdb/002774hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 419.9 22.2 260 555-832 41-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 417.5 18.5 261 555-833 13-291 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 414.5 17.1 256 556-829 27-304 (308)
4 4ase_A Vascular endothelial gr 1.0 1 1 408.9 20.1 270 547-833 56-349 (353)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 403.9 24.2 259 555-830 36-299 (307)
6 4b9d_A Serine/threonine-protei 1.0 1 1 402.2 17.1 251 555-825 24-277 (350)
7 4fie_A Serine/threonine-protei 1.0 1 1 399.6 21.6 250 555-825 151-401 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 398.6 19.3 250 555-825 74-324 (346)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 396.0 20.1 258 555-835 58-320 (336)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 390.2 14.7 250 555-825 32-285 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=419.88 Aligned_cols=260 Identities=24% Similarity=0.457 Sum_probs=219.6
Q ss_pred CCCCCCCEEECCCCEEEEEEEEC------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEE
Q ss_conf 19997780202573799999936------995899997246985408999999999971367870139888971793699
Q 002774 555 NNFSDANDVGSGGYGKVYKGTLP------NGQLIAIKRAQQGSMQGGQEFKMEIELLSRVHHKNLVSLLGFCFDRGEQML 628 (882)
Q Consensus 555 ~~~~~~~~lG~G~fg~Vy~a~~~------~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 628 (882)
.+|...++||+|+||+||+|++. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+++..++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEEECCCCCCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 998206998566568898-------------8655399999999999998753110279983305888876698689945
Q 002774 629 IYEFVPNGSLGDSLSGKN-------------GIRLDWIRRLKIALGAARGLSYLHELANPPIIHRDIKSSNILLDERLNA 695 (882)
Q Consensus 629 V~e~~~~gsL~~~l~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDik~~NIll~~~~~~ 695 (882)
|||||++|+|.++++... ..+++|.+++.|+.|+|.||+|||+.+ |+||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6940466511589988502333330689889777730999955678999999999994-999877780079999999975
Q 002774 696 KVADFGLSKSMSDSEKDHITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELLT-GRRPIERGKYIVREIRTVMDK 774 (882)
Q Consensus 696 kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~il~ellt-g~~P~~~~~~~~~~~~~~~~~ 774 (882)
||+|||+|+.....+.....+...||+.|||||++.+..++.++|||||||++|||+| |+.||...... +....+...
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~-~~~~~i~~g 276 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT-EAIDCITQG 276 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH-HHHHHHHHT
T ss_pred EECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHCC
T ss_conf 9766603336567875300476455656658265447999966300105789999982899999998999-999999808
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4421001000388689988988899999999980002999999999999999999997
Q 002774 775 KKELYNLYELIDPTIGLSTTLKGFEKYVDLALKCVQESGDDRPTMSEVVKDIENILQQ 832 (882)
Q Consensus 775 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~~~~ 832 (882)
. . ...+..++.++.+|+.+||+.||++||||+||++.|+.+.+.
T Consensus 277 -~---------~----~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 277 -R---------E----LERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp -C---------C----CCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred -C---------C----CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf -9---------8----998644639999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=417.47 Aligned_cols=261 Identities=25% Similarity=0.458 Sum_probs=219.7
Q ss_pred CCCCCCCEEECCCCEEEEEEEEC------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEE
Q ss_conf 19997780202573799999936------995899997246985408999999999971367870139888971793699
Q 002774 555 NNFSDANDVGSGGYGKVYKGTLP------NGQLIAIKRAQQGSMQGGQEFKMEIELLSRVHHKNLVSLLGFCFDRGEQML 628 (882)
Q Consensus 555 ~~~~~~~~lG~G~fg~Vy~a~~~------~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 628 (882)
++|...+.||+|+||+||+|++. ++..||||+++.......++|.+|+++|++++|||||+++|+|.+++..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEEECCCCCCCCCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 998206998566568898-----------865539999999999999875311027998330588887669868994569
Q 002774 629 IYEFVPNGSLGDSLSGKN-----------GIRLDWIRRLKIALGAARGLSYLHELANPPIIHRDIKSSNILLDERLNAKV 697 (882)
Q Consensus 629 V~e~~~~gsL~~~l~~~~-----------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDik~~NIll~~~~~~kl 697 (882)
|||||++|+|.++++... ...++|.++..|+.|+|.||.|||+.+ |+||||||+|||+++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred EECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 40466511589988502333330689889777730999955678999999999994-99987778007999999997544
Q 002774 698 ADFGLSKSMSDSEKDHITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELLT-GRRPIERGKYIVREIRTVMDKKK 776 (882)
Q Consensus 698 ~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~il~ellt-g~~P~~~~~~~~~~~~~~~~~~~ 776 (882)
+|||+|+.....+.........||+.|||||++.++.|+.++|||||||++|||+| |+.||..... .+....+... .
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~-~~~~~~i~~~-~ 247 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN-NEVIECITQG-R 247 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH-HHHHHHHHHT-C
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH-HHHHHHHHCC-C
T ss_conf 8730010067887416647513470103889870799970366778899999998089999999899-9999999808-9
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 210010003886899889888999999999800029999999999999999999971
Q 002774 777 ELYNLYELIDPTIGLSTTLKGFEKYVDLALKCVQESGDDRPTMSEVVKDIENILQQA 833 (882)
Q Consensus 777 ~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~~~~~ 833 (882)
....+..++.++.+|+.+||+.||++||||+++++.|+++.+..
T Consensus 248 -------------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~ 291 (299)
T 4asz_A 248 -------------VLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS 291 (299)
T ss_dssp -------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred -------------CCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf -------------88997414399999999976879668929999999998777639
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=414.48 Aligned_cols=256 Identities=23% Similarity=0.395 Sum_probs=212.5
Q ss_pred CCCCCCEEECCCCEEEEEEEEC------CCCEEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEE
Q ss_conf 9997780202573799999936------995899997246985-408999999999971367870139888971793699
Q 002774 556 NFSDANDVGSGGYGKVYKGTLP------NGQLIAIKRAQQGSM-QGGQEFKMEIELLSRVHHKNLVSLLGFCFDRGEQML 628 (882)
Q Consensus 556 ~~~~~~~lG~G~fg~Vy~a~~~------~g~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 628 (882)
++...++||+|+||+||+|++. +++.||||+++.... ...++|.+|+.++++++|||||+++|+|.+++..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEEECCCCCCCCCCCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 998206998566568898--------------865539999999999999875311027998330588887669868994
Q 002774 629 IYEFVPNGSLGDSLSGKN--------------GIRLDWIRRLKIALGAARGLSYLHELANPPIIHRDIKSSNILLDERLN 694 (882)
Q Consensus 629 V~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDik~~NIll~~~~~ 694 (882)
|||||++|+|.++++... ...++|.+++.|+.|||.||+|||+.+ |+||||||+|||+++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCCC
T ss_conf 99818999499999862765433332211112468999999999999999999998689---977873623068879997
Q ss_pred EEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHH
Q ss_conf 56940466511589988502333330689889777730999955678999999999994-99987778007999999997
Q 002774 695 AKVADFGLSKSMSDSEKDHITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELLT-GRRPIERGKYIVREIRTVMD 773 (882)
Q Consensus 695 ~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~il~ellt-g~~P~~~~~~~~~~~~~~~~ 773 (882)
+||+|||+|+.....+.....+...||+.|||||++.++.|+.++|||||||++|||+| |..||..... .+....+ .
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~-~~~~~~i-~ 261 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN-QDVVEMI-R 261 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH-HHHHHHH-H
T ss_pred EEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHH-H
T ss_conf 8988760202336777404734512577656989982799996300015799999999689999999899-9999999-8
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 54421001000388689988988899999999980002999999999999999999
Q 002774 774 KKKELYNLYELIDPTIGLSTTLKGFEKYVDLALKCVQESGDDRPTMSEVVKDIENI 829 (882)
Q Consensus 774 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~ 829 (882)
... ....+..++.++.+|+.+||+.||.+||||.||++.|+++
T Consensus 262 ~~~-------------~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 262 NRQ-------------VLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp TTC-------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CCC-------------CCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf 199-------------8999620369999999997587965792999999999853
No 4
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=408.90 Aligned_cols=270 Identities=26% Similarity=0.410 Sum_probs=219.9
Q ss_pred HHHHHHHHCCCCCCCEEECCCCEEEEEEEECC------CCEEEEEECCCCCCC-CHHHHHHHHHHHHHCCC-CCEEEEEE
Q ss_conf 99999997199977802025737999999369------958999972469854-08999999999971367-87013988
Q 002774 547 FEEVKKYTNNFSDANDVGSGGYGKVYKGTLPN------GQLIAIKRAQQGSMQ-GGQEFKMEIELLSRVHH-KNLVSLLG 618 (882)
Q Consensus 547 ~~e~~~~~~~~~~~~~lG~G~fg~Vy~a~~~~------g~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~H-~niv~l~~ 618 (882)
..+.+...++|...+.||+|+||+||+|++.. ++.||||+++..... ..+.|.+|+++|.+++| ||||+++|
T Consensus 56 ~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g 135 (353)
T 4ase_A 56 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 135 (353)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred CCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 85517057995982098217895999999868885447759999997623586899999999999997579984877889
Q ss_pred EEEEC-CCEEEEEEEECCCCCCCCCCCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
Q ss_conf 89717-93699998206998566568898--------------8655399999999999998753110279983305888
Q 002774 619 FCFDR-GEQMLIYEFVPNGSLGDSLSGKN--------------GIRLDWIRRLKIALGAARGLSYLHELANPPIIHRDIK 683 (882)
Q Consensus 619 ~~~~~-~~~~lV~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDik 683 (882)
+|.+. +..++|||||++|+|.++++... ...++|.++..++.|||+||+|||+.+ |+|||||
T Consensus 136 ~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDLK 212 (353)
T 4ase_A 136 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLA 212 (353)
T ss_dssp EECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCS
T ss_pred EEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCC
T ss_conf 9994697799999838989799999743566654333410110356899999999999999987676278---4357467
Q ss_pred CCCEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCC
Q ss_conf 8766986899456940466511589988502333330689889777730999955678999999999994-999877780
Q 002774 684 SSNILLDERLNAKVADFGLSKSMSDSEKDHITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELLT-GRRPIERGK 762 (882)
Q Consensus 684 ~~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~il~ellt-g~~P~~~~~ 762 (882)
|+|||+++++.+||+|||+|+.+.........+...||+.|||||++.++.|+.++|||||||++|||+| |+.||....
T Consensus 213 ~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~ 292 (353)
T 4ase_A 213 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 292 (353)
T ss_dssp GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred CCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCC
T ss_conf 21130579997897965432224568872032540146665698999469999755374068999999818999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 07999999997544210010003886899889888999999999800029999999999999999999971
Q 002774 763 YIVREIRTVMDKKKELYNLYELIDPTIGLSTTLKGFEKYVDLALKCVQESGDDRPTMSEVVKDIENILQQA 833 (882)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~~~~~ 833 (882)
........ +.... . ...+..++.++.+++.+||+.||.+||||.|++++|+.+++..
T Consensus 293 ~~~~~~~~-i~~g~---------~----~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 293 IDEEFCRR-LKEGT---------R----MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp CSHHHHHH-HHHTC---------C----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHCCC---------C----CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89999999-97389---------8----8888657899999999976869667939999999999999875
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=403.87 Aligned_cols=259 Identities=27% Similarity=0.457 Sum_probs=210.8
Q ss_pred CCCCCCCEEECCCCEEEEEEEECCCCEEEEEECCCCCC--CCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEE
Q ss_conf 19997780202573799999936995899997246985--4089999999999713678701398889717936999982
Q 002774 555 NNFSDANDVGSGGYGKVYKGTLPNGQLIAIKRAQQGSM--QGGQEFKMEIELLSRVHHKNLVSLLGFCFDRGEQMLIYEF 632 (882)
Q Consensus 555 ~~~~~~~~lG~G~fg~Vy~a~~~~g~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lV~e~ 632 (882)
+++...++||+|+||+||+|++. ..||||+++.... ...+.|.+|+.++++++|||||+++|+|.+ +..++||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy 112 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred HHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEEC
T ss_conf 99498449820888689999989--968999997268999999999999999985899887469999978-958999974
Q ss_pred ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 06998566568898865539999999999999875311027998330588887669868994569404665115899885
Q 002774 633 VPNGSLGDSLSGKNGIRLDWIRRLKIALGAARGLSYLHELANPPIIHRDIKSSNILLDERLNAKVADFGLSKSMSDSEKD 712 (882)
Q Consensus 633 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDik~~NIll~~~~~~kl~DfGla~~~~~~~~~ 712 (882)
|++|+|.++++... ..++|.++..|+.|+|.||+|||+.+ |+||||||+|||+++++.+||+|||+|+........
T Consensus 113 ~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~ 188 (307)
T 3omv_A 113 CEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred CCCCCHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC
T ss_conf 89987889875248-99999999999999999999997799---527855789978889990899441575424667764
Q ss_pred EEEEEEECCCCCCCHHHHHH---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 02333330689889777730---999955678999999999994999877780079999999975442100100038868
Q 002774 713 HITTQVKGTMGYLDPEYYMT---QQLTEKSDVYSFGVLMLELLTGRRPIERGKYIVREIRTVMDKKKELYNLYELIDPTI 789 (882)
Q Consensus 713 ~~~~~~~gt~~y~aPE~~~~---~~~~~~sDVwSlG~il~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 789 (882)
......+||+.|||||++.+ +.|+.++|||||||++|||+||+.||............+ .. ....|.+
T Consensus 189 ~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~-~~--------~~~~p~~ 259 (307)
T 3omv_A 189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMV-GR--------GYASPDL 259 (307)
T ss_dssp -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHH-HT--------TCCCCCS
T ss_pred EEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HC--------CCCCCCC
T ss_conf 03156446877249878614689987868775728999999997889989999699999999-65--------8888872
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99889888999999999800029999999999999999999
Q 002774 790 GLSTTLKGFEKYVDLALKCVQESGDDRPTMSEVVKDIENIL 830 (882)
Q Consensus 790 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~~ 830 (882)
. .....++..+.+++.+||+.||++||||.||++.|+.+.
T Consensus 260 ~-~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 260 S-KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp T-TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred C-CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 0-035445699999999975779768909899999999974
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=402.20 Aligned_cols=251 Identities=22% Similarity=0.411 Sum_probs=211.5
Q ss_pred CCCCCCCEEECCCCEEEEEEEE-CCCCEEEEEECCCCCCC--CHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 1999778020257379999993-69958999972469854--08999999999971367870139888971793699998
Q 002774 555 NNFSDANDVGSGGYGKVYKGTL-PNGQLIAIKRAQQGSMQ--GGQEFKMEIELLSRVHHKNLVSLLGFCFDRGEQMLIYE 631 (882)
Q Consensus 555 ~~~~~~~~lG~G~fg~Vy~a~~-~~g~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lV~e 631 (882)
++|...+.||+|+||+||+|+. .+|+.||||+++..... ..+.+.+|+.++++++|||||++++++.+++..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCC
Q ss_conf 20699856656889886553999999999999987531102799833058888766986899456940466511589988
Q 002774 632 FVPNGSLGDSLSGKNGIRLDWIRRLKIALGAARGLSYLHELANPPIIHRDIKSSNILLDERLNAKVADFGLSKSMSDSEK 711 (882)
Q Consensus 632 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDik~~NIll~~~~~~kl~DfGla~~~~~~~~ 711 (882)
|+++|+|.+++.......+++.++..|+.||+.||+|||+.+ |+||||||+|||++.++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~- 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV- 179 (350)
T ss_dssp CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH-
T ss_pred CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC-
T ss_conf 889983999999738999978999999999999999999899---1513597899798789998976465214406885-
Q ss_pred CEEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 50233333068988977773099995567899999999999499987778007999999997544210010003886899
Q 002774 712 DHITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELLTGRRPIERGKYIVREIRTVMDKKKELYNLYELIDPTIGL 791 (882)
Q Consensus 712 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~il~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 791 (882)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||.... .......+.... . +..
T Consensus 180 -~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~-~~~~~~~i~~~~---------~-~~~-- 245 (350)
T 4b9d_A 180 -ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS-MKNLVLKIISGS---------F-PPV-- 245 (350)
T ss_dssp -HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS-HHHHHHHHHHTC---------C-CCC--
T ss_pred -CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHCCC---------C-CCC--
T ss_conf -41014578836039999879998959999999999999997879989969-999999998089---------9-999--
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 8898889999999998000299999999999999
Q 002774 792 STTLKGFEKYVDLALKCVQESGDDRPTMSEVVKD 825 (882)
Q Consensus 792 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~ 825 (882)
+...+.++.+|+.+||+.||.+|||++|++++
T Consensus 246 --~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 246 --SLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp --CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred --CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf --75579999999999855896679089999639
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=399.60 Aligned_cols=250 Identities=23% Similarity=0.389 Sum_probs=211.6
Q ss_pred CCCCCCCEEECCCCEEEEEEEEC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEEE
Q ss_conf 19997780202573799999936-99589999724698540899999999997136787013988897179369999820
Q 002774 555 NNFSDANDVGSGGYGKVYKGTLP-NGQLIAIKRAQQGSMQGGQEFKMEIELLSRVHHKNLVSLLGFCFDRGEQMLIYEFV 633 (882)
Q Consensus 555 ~~~~~~~~lG~G~fg~Vy~a~~~-~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lV~e~~ 633 (882)
..|...++||+|+||.||+|+.. +|+.||||++........+.+.+|+.+|+.++|||||++++++.+++..|+|||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCE
Q ss_conf 69985665688988655399999999999998753110279983305888876698689945694046651158998850
Q 002774 634 PNGSLGDSLSGKNGIRLDWIRRLKIALGAARGLSYLHELANPPIIHRDIKSSNILLDERLNAKVADFGLSKSMSDSEKDH 713 (882)
Q Consensus 634 ~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDik~~NIll~~~~~~kl~DfGla~~~~~~~~~~ 713 (882)
++|+|.++++.. .+++.++..++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+|+.+.... .
T Consensus 231 ~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~--~ 302 (423)
T 4fie_A 231 EGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--P 302 (423)
T ss_dssp TTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC--C
T ss_pred CCCCHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCC--C
T ss_conf 998289887616---9899999999999999999999889---0446578777898589998980372654777887--6
Q ss_pred EEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 23333306898897777309999556789999999999949998777800799999999754421001000388689988
Q 002774 714 ITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELLTGRRPIERGKYIVREIRTVMDKKKELYNLYELIDPTIGLST 793 (882)
Q Consensus 714 ~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~il~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 793 (882)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||...... .....+... ..+.+. .
T Consensus 303 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~-~~~~~i~~~----------~~~~~~--~ 369 (423)
T 4fie_A 303 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL-KAMKMIRDN----------LPPRLK--N 369 (423)
T ss_dssp CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-HHHHHHHHS----------CCCCCS--C
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHCC----------CCCCCC--C
T ss_conf 434666474727999977999996899999999999999787998986999-999999727----------998876--5
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 98889999999998000299999999999999
Q 002774 794 TLKGFEKYVDLALKCVQESGDDRPTMSEVVKD 825 (882)
Q Consensus 794 ~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~ 825 (882)
......++.+|+.+||+.||.+|||+.|++++
T Consensus 370 ~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 370 LHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 01299999999999867895689099999609
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=398.64 Aligned_cols=250 Identities=23% Similarity=0.389 Sum_probs=211.0
Q ss_pred CCCCCCCEEECCCCEEEEEEEEC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEEE
Q ss_conf 19997780202573799999936-99589999724698540899999999997136787013988897179369999820
Q 002774 555 NNFSDANDVGSGGYGKVYKGTLP-NGQLIAIKRAQQGSMQGGQEFKMEIELLSRVHHKNLVSLLGFCFDRGEQMLIYEFV 633 (882)
Q Consensus 555 ~~~~~~~~lG~G~fg~Vy~a~~~-~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lV~e~~ 633 (882)
..|...++||+|+||+||+|+.. +|+.||||++........+.+.+|+.+|+.++|||||++++++.+++..|+||||+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCE
Q ss_conf 69985665688988655399999999999998753110279983305888876698689945694046651158998850
Q 002774 634 PNGSLGDSLSGKNGIRLDWIRRLKIALGAARGLSYLHELANPPIIHRDIKSSNILLDERLNAKVADFGLSKSMSDSEKDH 713 (882)
Q Consensus 634 ~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDik~~NIll~~~~~~kl~DfGla~~~~~~~~~~ 713 (882)
++|+|.+++... .+++..+..++.|++.||+|||+.+ |+||||||+|||++.++.+||+|||+|+.+.... .
T Consensus 154 ~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--~ 225 (346)
T 4fih_A 154 EGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--P 225 (346)
T ss_dssp TTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSS--C
T ss_pred CCCCHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCC--C
T ss_conf 998089998718---9899999999999999999999888---3556278899788799988990275753667887--7
Q ss_pred EEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 23333306898897777309999556789999999999949998777800799999999754421001000388689988
Q 002774 714 ITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELLTGRRPIERGKYIVREIRTVMDKKKELYNLYELIDPTIGLST 793 (882)
Q Consensus 714 ~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~il~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 793 (882)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+... ..+.. ..
T Consensus 226 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-~~~~~~i~~~----------~~~~~--~~ 292 (346)
T 4fih_A 226 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP-LKAMKMIRDN----------LPPRL--KN 292 (346)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-HHHHHHHHHS----------SCCCC--SC
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHCC----------CCCCC--CC
T ss_conf 53465627582799997799999689999999999999978799898599-9999999717----------99988--75
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 98889999999998000299999999999999
Q 002774 794 TLKGFEKYVDLALKCVQESGDDRPTMSEVVKD 825 (882)
Q Consensus 794 ~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~ 825 (882)
......++.+|+.+||+.||++|||++|++++
T Consensus 293 ~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 293 LHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 02299999999999867995689099999609
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=395.99 Aligned_cols=258 Identities=21% Similarity=0.254 Sum_probs=211.9
Q ss_pred CCCCCCCEEECCCCEEEEEEEEC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEEE
Q ss_conf 19997780202573799999936-99589999724698540899999999997136787013988897179369999820
Q 002774 555 NNFSDANDVGSGGYGKVYKGTLP-NGQLIAIKRAQQGSMQGGQEFKMEIELLSRVHHKNLVSLLGFCFDRGEQMLIYEFV 633 (882)
Q Consensus 555 ~~~~~~~~lG~G~fg~Vy~a~~~-~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lV~e~~ 633 (882)
+.|...++||+|+||+||+|+.. +|+.||||+++.... ..+|+.+++.++|||||++++++.+++..|+||||+
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 132 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL 132 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 351768685138780999999889998999999788886-----999999998579989993999999899999999665
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEEEECCCCCCCCCCCCC
Q ss_conf 699856656889886553999999999999987531102799833058888766986899-4569404665115899885
Q 002774 634 PNGSLGDSLSGKNGIRLDWIRRLKIALGAARGLSYLHELANPPIIHRDIKSSNILLDERL-NAKVADFGLSKSMSDSEKD 712 (882)
Q Consensus 634 ~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDik~~NIll~~~~-~~kl~DfGla~~~~~~~~~ 712 (882)
++|+|.++++..+ .+++..+..++.|++.||+|||+++ |+||||||+|||++.++ .+||+|||+|+.+......
T Consensus 133 ~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~ 207 (336)
T 4g3f_A 133 EGGSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLG 207 (336)
T ss_dssp TTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC------
T ss_pred CCCCHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCCC
T ss_conf 9986999998769--9999999999999999999999889---0426167788799589997999627877685678765
Q ss_pred E---EEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 0---2333330689889777730999955678999999999994999877780079999999975442100100038868
Q 002774 713 H---ITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELLTGRRPIERGKYIVREIRTVMDKKKELYNLYELIDPTI 789 (882)
Q Consensus 713 ~---~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~il~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 789 (882)
. .....+||+.|||||++.+..|+.++||||+||++|||++|+.||...... .....+...... . ..
T Consensus 208 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~-~~~~~i~~~~~~---~-~~----- 277 (336)
T 4g3f_A 208 KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRG-PLCLKIASEPPP---I-RE----- 277 (336)
T ss_dssp ------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCS-CCHHHHHHSCCG---G-GG-----
T ss_pred CCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHCCCCC---C-HH-----
T ss_conf 4022178545580200899988999890899999999999999786998998999-999999808998---0-02-----
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9988988899999999980002999999999999999999997199
Q 002774 790 GLSTTLKGFEKYVDLALKCVQESGDDRPTMSEVVKDIENILQQAGL 835 (882)
Q Consensus 790 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~~~~~~~ 835 (882)
.+...+..+.+++.+||+.||.+|||+.|+++++...+++.+.
T Consensus 278 ---~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~ 320 (336)
T 4g3f_A 278 ---IPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGG 320 (336)
T ss_dssp ---SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTS
T ss_pred ---CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf ---5866799999999997628976895999999999999754432
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=390.22 Aligned_cols=250 Identities=24% Similarity=0.307 Sum_probs=211.4
Q ss_pred CCCCCCCEEECCCCEEEEEEEE-CCCCEEEEEECCCCC---CCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEE
Q ss_conf 1999778020257379999993-699589999724698---540899999999997136787013988897179369999
Q 002774 555 NNFSDANDVGSGGYGKVYKGTL-PNGQLIAIKRAQQGS---MQGGQEFKMEIELLSRVHHKNLVSLLGFCFDRGEQMLIY 630 (882)
Q Consensus 555 ~~~~~~~~lG~G~fg~Vy~a~~-~~g~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lV~ 630 (882)
++|...+.||+|+||+||+|+. .+++.||+|++.+.. ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 82069985665688988655399999999999998753110279983305888876698689945694046651158998
Q 002774 631 EFVPNGSLGDSLSGKNGIRLDWIRRLKIALGAARGLSYLHELANPPIIHRDIKSSNILLDERLNAKVADFGLSKSMSDSE 710 (882)
Q Consensus 631 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDik~~NIll~~~~~~kl~DfGla~~~~~~~ 710 (882)
||+++|+|.+++...+ .+++..+..++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+|+.+....
T Consensus 112 Ey~~gG~L~~~i~~~~--~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~ 186 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPES 186 (311)
T ss_dssp CCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTTT
T ss_pred ECCCCCCHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCC
T ss_conf 6489989999998749--9999999999999999999999887---8268787899698589888998768750257787
Q ss_pred CCEEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 85023333306898897777309999556789999999999949998777800799999999754421001000388689
Q 002774 711 KDHITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELLTGRRPIERGKYIVREIRTVMDKKKELYNLYELIDPTIG 790 (882)
Q Consensus 711 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDVwSlG~il~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 790 (882)
........+||+.|||||++.+..|+.++||||+||++|||++|+.||.... .......+.... ..
T Consensus 187 ~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-~~~~~~~i~~~~-----------~~-- 252 (311)
T 4aw0_A 187 KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN-EGLIFAKIIKLE-----------YD-- 252 (311)
T ss_dssp TCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHTC-----------CC--
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHCCC-----------CC--
T ss_conf 7654367556803079989768999968989989999999974989989979-999999997199-----------99--
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 98898889999999998000299999999999999
Q 002774 791 LSTTLKGFEKYVDLALKCVQESGDDRPTMSEVVKD 825 (882)
Q Consensus 791 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~ 825 (882)
.+.....++.+|+.+|++.||.+|||++|++.+
T Consensus 253 --~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~ 285 (311)
T 4aw0_A 253 --FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGY 285 (311)
T ss_dssp --CCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCH
T ss_pred --CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHCCC
T ss_conf --996569999999999762897578096797587
Done!