BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002775
(882 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 294/907 (32%), Positives = 461/907 (50%), Gaps = 81/907 (8%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP +P YD+ + P+LTS F S I+V V T+FI+L++ DL I N ++ ++
Sbjct: 68 RLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQ--SE 125
Query: 69 VSSKALEP---TKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYRSSYE 124
S+ ++P KV A E + L E L P +A+ F+ L D +GFY+S+Y
Sbjct: 126 EDSRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYR 185
Query: 125 -LNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE-KVD 182
L GE + +AVT FEP AR FPC+DEP KA F I + S +ALSNMP + +++
Sbjct: 186 TLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELE 245
Query: 183 GNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVK 242
G + ++ + MSTYLVA ++ F + TS G+KV +Y K NQ +AL ++K
Sbjct: 246 GGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLK 305
Query: 243 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVA 302
L+ Y++YF + Y L KLD+IAIPDFA GAMEN+GL+TYRET+LL+D + S+A++K V
Sbjct: 306 LLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVT 365
Query: 303 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGL 362
V+AHELAHQWFGNLVTMEWW +WLNEGFA ++ +A ++ +PE + FL+ C E +
Sbjct: 366 RVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFEVI 425
Query: 363 RLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLA 422
D L S PI +I E+FD +SY KGA ++ ML+++LG E FQ+ +
Sbjct: 426 TKDSLNSSRPISK------PAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGII 479
Query: 423 SYIKKYACSNAKTEDLWAALEE---------------------------GSGEPVNKLMN 455
Y+KK++ NAK +DLW++L G V ++M
Sbjct: 480 QYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMT 539
Query: 456 SWTKQKGYPVIXXXXXXXXXXXXXXXXXXXGSPGDGQ---------WIVPITLCCGSYDV 506
+WT QKG P++ D + W +P+T S +V
Sbjct: 540 TWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNV 599
Query: 507 CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE 566
+L +K+D+ D+ E W+K NV+ G+Y V Y+ +L +
Sbjct: 600 IHRHILKSKTDTLDLPE-----------KTSWVKFNVDSNGYYIVHYEGHGWDQLITQLN 648
Query: 567 MKQ--LSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGR 624
L DR G++ D F L A + TL L + ET L L +SY
Sbjct: 649 QNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPAL--LEGLSYLESF 706
Query: 625 IAADARPELLDY---LKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK 681
R + D LK++ + F+ ++ W K S D +LR + L H
Sbjct: 707 YHMMDRRNISDISENLKRYLLQYFKPVIDRQSWSDK--GSVWDRMLRSALLKLACDLNHA 764
Query: 682 ETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQ 741
+ +A++ F ++ +P D+ K Y V A +G+ LL Y + S
Sbjct: 765 PCIQKAAELFSQWMESSGKLNIPTDVLKIVY-----SVGAQTTAGWNYLLEQYELSMSSA 819
Query: 742 EKTRILSSLASCPDVNIVLEVLNFLLSSEV-RSQD---AVYGLAVSIEGRETAWKWLKDN 797
E+ +IL +L++ +L+++ + +V ++Q+ ++ +A +G++ AW ++++N
Sbjct: 820 EQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVREN 879
Query: 798 WDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQ 855
W H+ K + G + I IS + F+S +K++EV+ FF S + + +E +
Sbjct: 880 WTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETIT 939
Query: 856 INAKWVE 862
N KW+E
Sbjct: 940 KNIKWLE 946
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 449 bits (1155), Expect = e-126, Method: Compositional matrix adjust.
Identities = 293/907 (32%), Positives = 460/907 (50%), Gaps = 81/907 (8%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP +P YD+ + P+LTS F S I+V V T+FI+L++ DL I N ++ ++
Sbjct: 68 RLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQ--SE 125
Query: 69 VSSKALEP---TKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYRSSYE 124
S+ ++P KV A E + L E L P +A+ F+ L D +GFY+S+Y
Sbjct: 126 EDSRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYR 185
Query: 125 -LNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE-KVD 182
L GE + +AVT FEP AR FPC+DEP KA F I + S +ALSNMP + +++
Sbjct: 186 TLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELE 245
Query: 183 GNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVK 242
G + ++ + MSTYLVA ++ F + TS G+KV +Y K NQ +AL ++K
Sbjct: 246 GGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLK 305
Query: 243 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVA 302
L+ Y++YF + Y L KLD+IAIPDFA GAMEN+GL+TYRET+LL+D + S+A++K V
Sbjct: 306 LLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVT 365
Query: 303 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGL 362
V+AHELAHQWFGNLVTMEWW +WL EGFA ++ +A ++ +PE + FL+ C E +
Sbjct: 366 RVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATYPELQFDDYFLNVCFEVI 425
Query: 363 RLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLA 422
D L S PI +I E+FD +SY KGA ++ ML+++LG E FQ+ +
Sbjct: 426 TKDSLNSSRPISK------PAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGII 479
Query: 423 SYIKKYACSNAKTEDLWAALEE---------------------------GSGEPVNKLMN 455
Y+KK++ NAK +DLW++L G V ++M
Sbjct: 480 QYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMT 539
Query: 456 SWTKQKGYPVIXXXXXXXXXXXXXXXXXXXGSPGDGQ---------WIVPITLCCGSYDV 506
+WT QKG P++ D + W +P+T S +V
Sbjct: 540 TWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNV 599
Query: 507 CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE 566
+L +K+D+ D+ E W+K NV+ G+Y V Y+ +L +
Sbjct: 600 IHRHILKSKTDTLDLPE-----------KTSWVKFNVDSNGYYIVHYEGHGWDQLITQLN 648
Query: 567 MKQ--LSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGR 624
L DR G++ D F L A + TL L + ET L L +SY
Sbjct: 649 QNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPAL--LEGLSYLESF 706
Query: 625 IAADARPELLDY---LKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK 681
R + D LK++ + F+ ++ W K S D +LR + L H
Sbjct: 707 YHMMDRRNISDISENLKRYLLQYFKPVIDRQSWSDK--GSVWDRMLRSALLKLACDLNHA 764
Query: 682 ETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQ 741
+ +A++ F ++ +P D+ K Y V A +G+ LL Y + S
Sbjct: 765 PCIQKAAELFSQWMESSGKLNIPTDVLKIVY-----SVGAQTTAGWNYLLEQYELSMSSA 819
Query: 742 EKTRILSSLASCPDVNIVLEVLNFLLSSEV-RSQD---AVYGLAVSIEGRETAWKWLKDN 797
E+ +IL +L++ +L+++ + +V ++Q+ ++ +A +G++ AW ++++N
Sbjct: 820 EQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVREN 879
Query: 798 WDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQ 855
W H+ K + G + I IS + F+S +K++EV+ FF S + + +E +
Sbjct: 880 WTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETIT 939
Query: 856 INAKWVE 862
N KW+E
Sbjct: 940 KNIKWLE 946
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 290/898 (32%), Positives = 443/898 (49%), Gaps = 63/898 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCK-----FGGSVAIDVDVVGDTKFIVLNAADL--TINNR 61
RLP +P Y++ L P LT F G + T I++++ L T
Sbjct: 10 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGH 69
Query: 62 SVSFTNKVSSKALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYR 120
V S+ E + ELVE E LV+ +L P M + F+G L D + GFYR
Sbjct: 70 MVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAGFYR 129
Query: 121 SSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEK 180
S Y KK +A TQ + DAR+ FPC+DEPA KATF ITL P+ L ALSNMP
Sbjct: 130 SEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSS 189
Query: 181 V----DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGK-- 234
D N ++ +P+MSTYL+A ++ F V + +G+ +R++ + +G
Sbjct: 190 TPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGM 249
Query: 235 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSA 294
+ALNV L + ++ Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q S+
Sbjct: 250 YALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSS 309
Query: 295 AANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQF 354
+NK+RV TV+AHELAHQWFGNLVT+ WW LWLNEGFA++V YL AD P W +
Sbjct: 310 ISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLI 369
Query: 355 LD-ECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 413
+ + + +D LA SHP+ EVN +I E+FD+ISY KGASVIRML N+L
Sbjct: 370 VPGDVYRVMAVDALASSHPLTTPAE---EVNTPAQISEMFDSISYSKGASVIRMLSNFLT 426
Query: 414 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPV 465
+ F+ LASY+ +A N DLW L++ + V +M+ WT Q G+PV
Sbjct: 427 EDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPV 486
Query: 466 IXXXXXXXXXXXX-----XXXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFD 520
I S D WIVPI+ KN ++ + D
Sbjct: 487 ITVDTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRD 539
Query: 521 IKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGI 578
+ + D+ W+ LNVN TG+++V YD+D + + ++ + + +R +
Sbjct: 540 VSQAQNDLFKTASDD--WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQV 597
Query: 579 LDDHFALCMARQQTLTSLLTLMASYSEETEY----TVLSNLITISYKIGRIAADARPELL 634
+ D F L A +T L + E EY LS+L S R ++ +
Sbjct: 598 IYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMK 655
Query: 635 DYLKQFFISLFQNSAEKL--GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFH 692
YL++ LFQ+ E L W +P E+ +D + G + N A F
Sbjct: 656 KYLRKQVEPLFQH-FETLTKNWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFD 713
Query: 693 AFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLAS 752
+++D + P++R Y ++ + ++ ++ L E ++ S+LA
Sbjct: 714 QWMSDPENNPIHPNLRSTIYC---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALAC 770
Query: 753 CPDVNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG 808
+V ++ L + L+ + +R QDA + +A ++ G+ AW +++ NW + + +G G
Sbjct: 771 SNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGG 830
Query: 809 -FLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 862
F + I + F+S +++++E+F + R L Q++E+ + N KWV+
Sbjct: 831 SFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 888
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 290/898 (32%), Positives = 443/898 (49%), Gaps = 63/898 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCK-----FGGSVAIDVDVVGDTKFIVLNAADL--TINNR 61
RLP +P Y++ L P LT F G + T I++++ L T
Sbjct: 9 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGH 68
Query: 62 SVSFTNKVSSKALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYR 120
V S+ E + ELVE E LV+ +L P M + F+G L D + GFYR
Sbjct: 69 MVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAGFYR 128
Query: 121 SSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEK 180
S Y KK +A TQ + DAR+ FPC+DEPA KATF ITL P+ L ALSNMP
Sbjct: 129 SEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSS 188
Query: 181 V----DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGK-- 234
D N ++ +P+MSTYL+A ++ F V + +G+ +R++ + +G
Sbjct: 189 TPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGM 248
Query: 235 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSA 294
+ALNV L + ++ Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q S+
Sbjct: 249 YALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSS 308
Query: 295 AANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQF 354
+NK+RV TV+AHELAHQWFGNLVT+ WW LWLNEGFA++V YL AD P W +
Sbjct: 309 ISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLI 368
Query: 355 LD-ECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 413
+ + + +D LA SHP+ EVN +I E+FD+ISY KGASVIRML N+L
Sbjct: 369 VPGDVYRVMAVDALASSHPLTTPAE---EVNTPAQISEMFDSISYSKGASVIRMLSNFLT 425
Query: 414 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPV 465
+ F+ LASY+ +A N DLW L++ + V +M+ WT Q G+PV
Sbjct: 426 EDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPV 485
Query: 466 IXXXXXXXXXXXX-----XXXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFD 520
I S D WIVPI+ KN ++ + D
Sbjct: 486 ITVDTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRD 538
Query: 521 IKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGI 578
+ + D+ W+ LNVN TG+++V YD+D + + ++ + + +R +
Sbjct: 539 VSQAQNDLFKTASDD--WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQV 596
Query: 579 LDDHFALCMARQQTLTSLLTLMASYSEETEY----TVLSNLITISYKIGRIAADARPELL 634
+ D F L A +T L + E EY LS+L S R ++ +
Sbjct: 597 IYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMK 654
Query: 635 DYLKQFFISLFQNSAEKL--GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFH 692
YL++ LFQ+ E L W +P E+ +D + G + N A F
Sbjct: 655 KYLRKQVEPLFQH-FETLTKNWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFD 712
Query: 693 AFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLAS 752
+++D + P++R Y ++ + ++ ++ L E ++ S+LA
Sbjct: 713 QWMSDPENNPIHPNLRSTIYC---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALAC 769
Query: 753 CPDVNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG 808
+V ++ L + L+ + +R QDA + +A ++ G+ AW +++ NW + + +G G
Sbjct: 770 SNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGG 829
Query: 809 -FLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 862
F + I + F+S +++++E+F + R L Q++E+ + N KWV+
Sbjct: 830 SFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 887
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 290/898 (32%), Positives = 443/898 (49%), Gaps = 63/898 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCK-----FGGSVAIDVDVVGDTKFIVLNAADL--TINNR 61
RLP +P Y++ L P LT F G + T I++++ L T
Sbjct: 53 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFICQEPTDVIIIHSKKLNYTTQGH 112
Query: 62 SVSFTNKVSSKALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYR 120
V S+ E + ELVE E LV+ +L P M + F+G L D + GFYR
Sbjct: 113 MVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAGFYR 172
Query: 121 SSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEK 180
S Y KK +A TQ + DAR+ FPC+DEPA KATF ITL P+ L ALSNMP
Sbjct: 173 SEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSS 232
Query: 181 V----DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGK-- 234
D N ++ +P+MSTYL+A ++ F V + +G+ +R++ + +G
Sbjct: 233 TPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGM 292
Query: 235 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSA 294
+ALNV L + ++ Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q S+
Sbjct: 293 YALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSS 352
Query: 295 AANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQF 354
+NK+RV TV+AHELAHQWFGNLVT+ WW LWLNEGFA++V YL AD P W +
Sbjct: 353 ISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLI 412
Query: 355 LD-ECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 413
+ + + +D LA SHP+ EVN +I E+FD+ISY KGASVIRML N+L
Sbjct: 413 VPGDVYRVMAVDALASSHPLTTPAE---EVNTPAQISEMFDSISYSKGASVIRMLSNFLT 469
Query: 414 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPV 465
+ F+ LASY+ +A N DLW L++ + V +M+ WT Q G+PV
Sbjct: 470 EDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPV 529
Query: 466 IXXXXXXXXXXXX-----XXXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFD 520
I S D WIVPI+ KN ++ + D
Sbjct: 530 ITVDTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRD 582
Query: 521 IKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGI 578
+ + D+ W+ LNVN TG+++V YD+D + + ++ + + +R +
Sbjct: 583 VSQAQNDLFKTASDD--WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQV 640
Query: 579 LDDHFALCMARQQTLTSLLTLMASYSEETEY----TVLSNLITISYKIGRIAADARPELL 634
+ D F L A +T L + E EY LS+L S R ++ +
Sbjct: 641 IYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMK 698
Query: 635 DYLKQFFISLFQNSAEKL--GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFH 692
YL++ LFQ+ E L W +P E+ +D + G + N A F
Sbjct: 699 KYLRKQVEPLFQH-FETLTKNWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFD 756
Query: 693 AFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLAS 752
+++D + P++R Y ++ + ++ ++ L E ++ S+LA
Sbjct: 757 QWMSDPENNPIHPNLRSTIYC---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALAC 813
Query: 753 CPDVNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG 808
+V ++ L + L+ + +R QDA + +A ++ G+ AW +++ NW + + +G G
Sbjct: 814 SNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGG 873
Query: 809 -FLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 862
F + I + F+S +++++E+F + R L Q++E+ + N KWV+
Sbjct: 874 SFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 931
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 289/898 (32%), Positives = 443/898 (49%), Gaps = 63/898 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCK-----FGGSVAIDVDVVGDTKFIVLNAADL--TINNR 61
RLP +P Y++ L P LT F G + T I++++ L T
Sbjct: 9 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGH 68
Query: 62 SVSFTNKVSSKALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYR 120
V S+ E + ELVE E LV+ +L P M + F+G L D + GFYR
Sbjct: 69 MVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAGFYR 128
Query: 121 SSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEK 180
S Y KK +A TQ + DAR+ FPC+DEPA KATF ITL P+ L ALSNMP
Sbjct: 129 SEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSS 188
Query: 181 V----DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGK-- 234
D N ++ +P+MSTYL+A ++ F V + +G+ +R++ + +G
Sbjct: 189 TPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGM 248
Query: 235 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSA 294
+ALNV L + ++ Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q S+
Sbjct: 249 YALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSS 308
Query: 295 AANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQF 354
+NK+RV TV+AH+LAHQWFGNLVT+ WW LWLNEGFA++V YL AD P W +
Sbjct: 309 ISNKERVVTVIAHQLAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLI 368
Query: 355 LD-ECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 413
+ + + +D LA SHP+ EVN +I E+FD+ISY KGASVIRML N+L
Sbjct: 369 VPGDVYRVMAVDALASSHPLTTPAE---EVNTPAQISEMFDSISYSKGASVIRMLSNFLT 425
Query: 414 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPV 465
+ F+ LASY+ +A N DLW L++ + V +M+ WT Q G+PV
Sbjct: 426 EDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPV 485
Query: 466 IXXXXXXXXXXXX-----XXXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFD 520
I S D WIVPI+ KN ++ + D
Sbjct: 486 ITVDTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRD 538
Query: 521 IKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGI 578
+ + D+ W+ LNVN TG+++V YD+D + + ++ + + +R +
Sbjct: 539 VSQAQNDLFKTASDD--WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQV 596
Query: 579 LDDHFALCMARQQTLTSLLTLMASYSEETEY----TVLSNLITISYKIGRIAADARPELL 634
+ D F L A +T L + E EY LS+L S R ++ +
Sbjct: 597 IYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMK 654
Query: 635 DYLKQFFISLFQNSAEKL--GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFH 692
YL++ LFQ+ E L W +P E+ +D + G + N A F
Sbjct: 655 KYLRKQVEPLFQH-FETLTKNWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFD 712
Query: 693 AFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLAS 752
+++D + P++R Y ++ + ++ ++ L E ++ S+LA
Sbjct: 713 QWMSDPENNPIHPNLRSTIYC---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALAC 769
Query: 753 CPDVNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG 808
+V ++ L + L+ + +R QDA + +A ++ G+ AW +++ NW + + +G G
Sbjct: 770 SNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGG 829
Query: 809 -FLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 862
F + I + F+S +++++E+F + R L Q++E+ + N KWV+
Sbjct: 830 SFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 887
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 284/907 (31%), Positives = 451/907 (49%), Gaps = 89/907 (9%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP++ +P YD+ + +LT+ F G+ +++ T I+L++ L I+ ++ K
Sbjct: 59 RLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATL---RK 115
Query: 69 VSSKAL--EPTKVELVEADEILVLEFAETLPTGMG-VLAIGFEGVLNDKMKGFYRSSYEL 125
+ + L EP +V E + L E L G+ + I + G L++ GFY+S+Y
Sbjct: 116 GAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRT 175
Query: 126 N-GEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE-KVDG 183
GE + +A TQFEP AR FPC+DEPA KA+F I + +A+SNMP++ V
Sbjct: 176 KEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAE 235
Query: 184 NMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKT 243
+ + + MSTYLVA +I F+ V T G+KV VY K NQ +AL+ AV
Sbjct: 236 GLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTL 295
Query: 244 LELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVAT 303
LE Y++YF++PY LPK D+ AIPDF +GAMEN+GL TYRE+ALL+D + S+A++K +
Sbjct: 296 LEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITM 355
Query: 304 VVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLR 363
VAHELAHQWFGNLVTMEWW LWLNEGFA ++ +++ PE K+ F +C + +
Sbjct: 356 TVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAME 415
Query: 364 LDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLAS 423
+D L SHP+ V + +I E+FD +SY KGA ++ ML+ YL A+ F+ +
Sbjct: 416 VDALNSSHPV------STPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQ 469
Query: 424 YIKKYACSNAKTEDLWAALEE---------------------------GSGEPVNKLMNS 456
Y++K++ N K EDLW ++ G V +MN+
Sbjct: 470 YLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNT 529
Query: 457 WTKQKGYPVIXXXX--XXXXXXXXXXXXXXXGSPGDGQ-WIVPITLCCGSYDVCKNFLLY 513
WT QKG+P+I G+P G W VP+T D+ FLL
Sbjct: 530 WTLQKGFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLK 589
Query: 514 NKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LS 571
K+D + E + WIK NV G+Y V Y+ D L ++ +S
Sbjct: 590 TKTDVLILPEEV-----------EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVS 638
Query: 572 ETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETE----YTVLSNLITISYKIGRIAA 627
DR ++++ F L + ++ L L ETE + L+ LI + YK+ +
Sbjct: 639 SNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPM-YKL--MEK 695
Query: 628 DARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEA 687
E+ K F I L ++ +K W + S + +LR ++ + ++ + A
Sbjct: 696 RDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVS--ERMLRSQLLLLACVHNYQPCVQRA 753
Query: 688 SKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRIL 747
F + LP D+ A + V A G++ L Y+ + S EK++I
Sbjct: 754 EGYFRKWKESNGNLSLPVDVTLAVFA-----VGAQSTEGWDFLYSKYQFSLSSTEKSQI- 807
Query: 748 SSLASCPDVNIVLEVLNFLL-----SSEVRSQDAVYGLAVSIEGRET-----AWKWLKDN 797
A C N E L +LL ++++Q+ + +++ GR AW++L+ N
Sbjct: 808 -EFALCRTQN--KEKLQWLLDESFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFLRKN 862
Query: 798 WDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQ 855
W+ + + + G I + + F++ ++ EV+ FFSS + R ++Q+IE ++
Sbjct: 863 WNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIE 922
Query: 856 INAKWVE 862
N W++
Sbjct: 923 ENIGWMD 929
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 287/915 (31%), Positives = 453/915 (49%), Gaps = 105/915 (11%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP++ +P YD+ + +LT+ F G+ +++ T I+L++ L I+ ++ K
Sbjct: 8 RLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATL---RK 64
Query: 69 VSSKAL--EPTKVELVEADEILVLEFAETLPTGMG-VLAIGFEGVLNDKMKGFYRSSYEL 125
+ + L EP +V E + L E L G+ + I + G L++ GFY+S+Y
Sbjct: 65 GAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRT 124
Query: 126 N-GEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGN 184
GE + +A TQFEP AR FPC+DEPA KA+F I + +A+SNMP++
Sbjct: 125 KEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLV------- 177
Query: 185 MKTVSYQESPI---------MSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKF 235
K+V+ E I MSTYLVA +I F+ V T G+KV VY K NQ +
Sbjct: 178 -KSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADY 236
Query: 236 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAA 295
AL+ AV LE Y++YF++PY LPK D+ AIPDF +GAMEN+GL TYRE+ALL+D + S+A
Sbjct: 237 ALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSA 296
Query: 296 ANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFL 355
++K + VAHELAHQWFGNLVTMEWW LWLNEGFA ++ +++ PE K+ F
Sbjct: 297 SSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFF 356
Query: 356 DECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 415
+C + + +D L SHP+ V + +I E+FD +SY KGA ++ ML+ YL A+
Sbjct: 357 GKCFDAMEVDALNSSHPV------STPVENPAQIREMFDDVSYDKGACILNMLREYLSAD 410
Query: 416 CFQRSLASYIKKYACSNAKTEDLWAALEE---------------------------GSGE 448
F+ + Y++K++ N K EDLW ++ G
Sbjct: 411 AFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGV 470
Query: 449 PVNKLMNSWTKQKGYPVIXXXX--XXXXXXXXXXXXXXXGSPGDGQ-WIVPITLCCGSYD 505
V +MN+WT QKG+P+I G+P G W VP+T D
Sbjct: 471 DVKTMMNTWTLQKGFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSD 530
Query: 506 VCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAI 565
+ FLL K+D + E + WIK NV G+Y V Y+ D L +
Sbjct: 531 MVHRFLLKTKTDVLILPEEV-----------EWIKFNVGMNGYYIVHYEDDGWDSLTGLL 579
Query: 566 EMKQ--LSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETE----YTVLSNLITIS 619
+ +S DR ++++ F L + ++ L L ETE + L+ LI +
Sbjct: 580 KGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPM- 638
Query: 620 YKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLG 679
YK+ + E+ K F I L ++ +K W + S + +LR ++ +
Sbjct: 639 YKL--MEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVS--ERMLRSQLLLLACVHN 694
Query: 680 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDL 739
++ + A F + LP D+ A + V A G++ L Y+ +
Sbjct: 695 YQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFA-----VGAQSTEGWDFLYSKYQFSLS 749
Query: 740 SQEKTRILSSLASCPDVNIVLEVLNFLL-----SSEVRSQDAVYGLAVSIEGRET----- 789
S EK++I A C N E L +LL ++++Q+ + +++ GR
Sbjct: 750 STEKSQI--EFALCRTQN--KEKLQWLLDESFKGDKIKTQE--FPQILTLIGRNPVGYPL 803
Query: 790 AWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTL 847
AW++L+ NW+ + + + G I + + F++ ++ EV+ FFSS + R +
Sbjct: 804 AWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCV 863
Query: 848 RQSIERVQINAKWVE 862
+Q+IE ++ N W++
Sbjct: 864 QQTIETIEENIGWMD 878
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 288/915 (31%), Positives = 454/915 (49%), Gaps = 105/915 (11%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP++ +P YD+ + +LT+ F G+ +++ T I+L++ L I+ ++ K
Sbjct: 17 RLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATL---RK 73
Query: 69 VSSKAL--EPTKVELVEADEILVLEFAETLPTGMG-VLAIGFEGVLNDKMKGFYRSSYEL 125
+ + L EP +V E + L E L G+ + I + G L++ GFY+S+Y
Sbjct: 74 GAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRT 133
Query: 126 N-GEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGN 184
GE + +A TQFEP AR FPC+DEPA KA+F I + +A+SNMP++
Sbjct: 134 KEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLV------- 186
Query: 185 MKTVSYQESPI---------MSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKF 235
K+V+ E I MSTYLVA +I F+ V T G+KV VY K NQ +
Sbjct: 187 -KSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADY 245
Query: 236 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAA 295
AL+ AV LE Y++YF++PY LPK D+ AIPDF +GAMEN+GL TYRE+ALL+D + S+A
Sbjct: 246 ALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSA 305
Query: 296 ANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFL 355
++K + VAHELAHQWFGNLVTMEWW LWLNEGFA ++ +++ PE K+ F
Sbjct: 306 SSKLDITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFF 365
Query: 356 DECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 415
+C + + +D L SHP+ V + +I E+FD +SY KGA ++ ML+ YL A+
Sbjct: 366 GKCFDAMEVDALNSSHPV------STPVENPAQIREMFDDVSYDKGACILNMLREYLSAD 419
Query: 416 CFQRSLASYIKKYACSNAKTEDLW---AALEEGSGEP----------------------- 449
F+ + Y++K++ N K EDLW A++ G
Sbjct: 420 AFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQERV 479
Query: 450 -VNKLMNSWTKQKGYPVIXXXX--XXXXXXXXXXXXXXXGSPGDGQ-WIVPITLCCGSYD 505
V +MN+WT Q+G+P+I G+P G W VP+T D
Sbjct: 480 DVKTMMNTWTLQRGFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSD 539
Query: 506 VCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAI 565
+ FLL K+D + E + WIK NV G+Y V Y+ D L +
Sbjct: 540 MVHRFLLKTKTDVLILPEEV-----------EWIKFNVGMNGYYIVHYEDDGWDSLTGLL 588
Query: 566 EMKQ--LSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETE----YTVLSNLITIS 619
+ +S DR ++++ F L + ++ L L ETE + L+ LI +
Sbjct: 589 KGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPM- 647
Query: 620 YKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLG 679
YK+ + E+ K F I L ++ +K W + S + +LR E+ +
Sbjct: 648 YKL--MEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVS--ERMLRSELLLLACVHN 703
Query: 680 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDL 739
++ + A F + LP D+ A + V A G++ L Y+ +
Sbjct: 704 YQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFA-----VGAQSTEGWDFLYSKYQFSLS 758
Query: 740 SQEKTRILSSLASCPDVNIVLEVLNFLL-----SSEVRSQDAVYGLAVSIEGRET----- 789
S EK++I A C N E L +LL ++++Q+ + +++ GR
Sbjct: 759 STEKSQI--EFALCRTQN--KEKLQWLLDESFKGDKIKTQE--FPQILTLIGRNPVGYPL 812
Query: 790 AWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTL 847
AW++L+ NW+ + + + G I + + F++ ++ EV+ FFSS + R +
Sbjct: 813 AWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCV 872
Query: 848 RQSIERVQINAKWVE 862
+Q+IE ++ N W++
Sbjct: 873 QQTIETIEENIGWMD 887
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 290/900 (32%), Positives = 446/900 (49%), Gaps = 68/900 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCK-----FGGSVAIDVDVVGDTKFIVLNAADLTINNRSV 63
RLP P Y + L P LT F GS + T I++++ L N ++
Sbjct: 11 RLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKL---NYTL 67
Query: 64 SFTNKV------SSKALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMK 116
S ++V S+ + K ELVE E LV+ +L + FEG L D +
Sbjct: 68 SQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGSLVKDSQYEMDSEFEGELADDLA 127
Query: 117 GFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNM-- 174
GFYRS Y +K +A TQ + ADAR+ FPC+DEPA KA F ITL P +L ALSNM
Sbjct: 128 GFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLP 187
Query: 175 --PVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGK--A 230
P D N + +P MSTYL+A ++ FDYVE S+G+ +R++ + A
Sbjct: 188 KGPSTPLPEDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAA 247
Query: 231 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 290
G +ALNV L + ++ PY LPK D I +PDF AGAMEN+GLVTYRE +LL+D
Sbjct: 248 GHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDP 307
Query: 291 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKI 350
S+++NK+RV TV+AHELAHQWFGNLVT+EWW LWLNEGFA++V YL AD P W +
Sbjct: 308 LSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNL 367
Query: 351 WT-QFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQ 409
L++ + +D LA SHP+ S E+N +I E+FDAISY KGASV+RML
Sbjct: 368 KDLMVLNDVYRVMAVDALASSHPLSTPAS---EINTPAQISELFDAISYSKGASVLRMLS 424
Query: 410 NYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE-------PVNKLMNSWTKQKG 462
++L + F++ LASY+ +A N +LW L+E V +MN WT Q G
Sbjct: 425 SFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMG 484
Query: 463 YPVIXXXXXXXXXXXXX-----XXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSD 517
+PVI S + WIVPIT +L+ D
Sbjct: 485 FPVITVDTSTGTLSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLI----D 540
Query: 518 SFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDR 575
+L S ++ W+ LN+N TG+YRV YD++ ++ ++ + +R
Sbjct: 541 VRAQNDLFSTSGNE------WVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINR 594
Query: 576 FGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVL-SNLITISY-KIGRIAADARPEL 633
I++D F L A + +T L EE +Y + L ++SY K+ ++ +
Sbjct: 595 AQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPM 654
Query: 634 LDYLKQFFISL---FQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKR 690
+YLK+ L F+N+ W P E+ +D + G E S
Sbjct: 655 KNYLKKQVTPLFIHFRNNTN--NWREIP-ENLMDQYSEVNAISTACSNGVPECEEMVSGL 711
Query: 691 FHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSL 750
F ++ + + P++R Y ++ ++ +R L E ++ ++L
Sbjct: 712 FKQWMENPNNNPIHPNLRSTVYC---NAIAQGGEEEWDFAWEQFRNATLVNEADKLRAAL 768
Query: 751 ASCPDVNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWG 806
A ++ I+ L++ L+ + +R QDA + + ++ G+ W +++ NW + +G
Sbjct: 769 ACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYG 828
Query: 807 SG-FLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 862
G F + I ++ F++ +++++E+F + R L Q++E+ + N KWV+
Sbjct: 829 GGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVK 888
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 274/874 (31%), Positives = 427/874 (48%), Gaps = 125/874 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTIN-----NRSVSFT-NKVS 70
++YD+ L D+ F G+ I D GD IVL+A L IN R +FT + +
Sbjct: 4 EKYDLTLDFDIQKRTFNGTETITADA-GD---IVLDAVGLQINWMKVNGRDTAFTYDGQT 59
Query: 71 SKA---LEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNG 127
+A +P K+E I F G ++D + G Y + G
Sbjct: 60 VRAPGDSQPQKIE------------------------ISFAGKVSDSLSGIYYA-----G 90
Query: 128 EKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKT 187
+ M T F+ DARR FPC D PA KA F IT+ + + A+SNMP +V K
Sbjct: 91 RENGMITTHFQATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEV-SERKV 149
Query: 188 VSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELY 247
V +Q++P MSTYL+ V IG F Y + D + + K + K+ L++A K++E Y
Sbjct: 150 VEFQDTPRMSTYLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEFY 206
Query: 248 KEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD--QHSAAANKQRVATVV 305
+ YF +PY+LPK+ +I++P+F AGAMEN+G +T+RE +Y D ++SA K+ ATV+
Sbjct: 207 ENYFGIPYALPKMHLISVPEFGAGAMENWGAITFRE---IYMDIAENSAVTVKRNSATVI 263
Query: 306 AHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEG-LRL 364
AHE+AHQWFG+LVTM+WW LWLNE FAT++SY D+LFPEW W F T G LR
Sbjct: 264 AHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRS 323
Query: 365 DGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 424
D L +HPIE V+V EI +IFD ISY KGAS++RM+++Y G E F++ ++ Y
Sbjct: 324 DSLKNTHPIE------VDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKY 377
Query: 425 IKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVIXXXXXXXXXXXXXXXXXX 484
+ + NA+ DLW A+E+ SG+PV ++M W K GYPVI
Sbjct: 378 LNDHKFGNAEGSDLWTAIEDVSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLL 437
Query: 485 XGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVN 544
G +G+W VP+ + K D + + LL S E D G IK+N +
Sbjct: 438 NGEE-EGRWPVPVNI--------------KKKDGVE-RILLEDEASIEAD--GLIKINAD 479
Query: 545 QTGFYRVKYDK-DLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY 603
GFYRV YD + +G+ + LS DR G++DD FA ++ + + ++
Sbjct: 480 SAGFYRVLYDDATFSDVMGH---YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNF 536
Query: 604 SEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAE-----KLGWDSKP 658
++ ++ V++ ++ ++YL+ F + A ++ + +
Sbjct: 537 FDDEDHNVITAIVG---------------QMEYLR-MLTHAFDDDARAFCRSRMQFLTGK 580
Query: 659 GESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQK 718
+ +L L G + + L ++ + E SK F F + P++R + +A
Sbjct: 581 QDENLKIAL-GRV-SRLYVMVDESYAEEMSKLFKDFDS------AEPEMRSS--IATAYA 630
Query: 719 VSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVY 778
+ D G LL +R D +++ RI+S+ + V + +E++ QD +
Sbjct: 631 LVTGDLKG---LLEKFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMIS 687
Query: 779 GLAVSIE---GRETAWKWLKDNWDHISKTWGSGFLITRFISSIVS---PFASYEKVREVE 832
+ ++E GRE ++ N D I + F R S V P + + E
Sbjct: 688 FFSSALETLPGRE----FIFANLDRIIRLVIRYFTGNRTASRTVEMMIPVIGLDHP-DAE 742
Query: 833 EFFSSRCKPYIARTLRQSIERVQINAKWVESIRN 866
+ + I+ L + IE + +N K VE IR
Sbjct: 743 DIVRNIGSKNISMGLAKGIEMLAVNRKLVERIRQ 776
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 274/874 (31%), Positives = 426/874 (48%), Gaps = 125/874 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTIN-----NRSVSFT-NKVS 70
++YD+ L D+ F G+ I D GD IVL+A L IN R +FT + +
Sbjct: 4 EKYDLTLDFDIQKRTFNGTETITADA-GD---IVLDAVGLQINWMKVNGRDTAFTYDGQT 59
Query: 71 SKA---LEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNG 127
+A +P K+E I F G ++D + G Y + G
Sbjct: 60 VRAPGDSQPQKIE------------------------ISFAGKVSDSLSGIYYA-----G 90
Query: 128 EKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKT 187
+ M T FE DARR FPC D PA KA F IT+ + + A+SNMP +V K
Sbjct: 91 RENGMITTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEV-SERKV 149
Query: 188 VSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELY 247
V +Q++P MSTYL+ V IG F Y + D + + K + K+ L++A K++E Y
Sbjct: 150 VEFQDTPRMSTYLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEFY 206
Query: 248 KEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD--QHSAAANKQRVATVV 305
+ YF +PY+LPK+ +I++P+F AGAMEN+G +T+RE +Y D ++SA K+ A V+
Sbjct: 207 ENYFGIPYALPKMHLISVPEFGAGAMENWGAITFRE---IYMDIAENSAVTVKRNSANVI 263
Query: 306 AHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEG-LRL 364
AHE+AHQWFG+LVTM+WW LWLNE FAT++SY D+LFPEW W F T G LR
Sbjct: 264 AHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRS 323
Query: 365 DGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 424
D L +HPIE V+V EI +IFD ISY KGAS++RM+++Y G E F++ ++ Y
Sbjct: 324 DSLKNTHPIE------VDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKY 377
Query: 425 IKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVIXXXXXXXXXXXXXXXXXX 484
+ + NA+ DLW A+E+ SG+PV ++M W K GYPVI
Sbjct: 378 LNDHKFGNAEGSDLWTAIEDVSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLL 437
Query: 485 XGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVN 544
G +G+W VP+ + K D + + LL S E D G IK+N +
Sbjct: 438 NGEE-EGRWPVPVNI--------------KKKDGVE-RILLEDEASIEAD--GLIKINAD 479
Query: 545 QTGFYRVKYDK-DLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY 603
GFYRV YD + +G+ + LS DR G++DD FA ++ + + ++
Sbjct: 480 SAGFYRVLYDDATFSDVMGH---YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNF 536
Query: 604 SEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAE-----KLGWDSKP 658
++ ++ V++ ++ ++YL+ F + A ++ + +
Sbjct: 537 FDDEDHNVITAIVG---------------QMEYLR-MLTHAFDDDARAFCRSRMQFLTGK 580
Query: 659 GESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQK 718
+ +L L G + + L ++ + E SK F F + P++R + +A
Sbjct: 581 QDENLKIAL-GRV-SRLYVMVDESYAEEMSKLFKDFDS------AEPEMRSS--IATAYA 630
Query: 719 VSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVY 778
+ D G LL +R D +++ RI+S+ + V + +E++ QD +
Sbjct: 631 LVTGDLKG---LLEKFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMIS 687
Query: 779 GLAVSIE---GRETAWKWLKDNWDHISKTWGSGFLITRFISSIVS---PFASYEKVREVE 832
+ ++E GRE ++ N D I + F R S V P + + E
Sbjct: 688 FFSSALETLPGRE----FIFANLDRIIRLVIRYFTGNRTASRTVEMMIPVIGLDHP-DAE 742
Query: 833 EFFSSRCKPYIARTLRQSIERVQINAKWVESIRN 866
+ + I+ L + IE + +N K VE IR
Sbjct: 743 DIVRNIGSKNISMGLAKGIEMLAVNRKLVERIRQ 776
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 168/366 (45%), Gaps = 31/366 (8%)
Query: 121 SSYELNG--EKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSEL--VALSNMPV 176
++Y L G + KN+ V+Q E RR D P A + +T+ E V LSN
Sbjct: 105 TNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDK 164
Query: 177 IDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKA 230
++E ++ G + + P+ YL AVV G Y+ +T +++ V+ +
Sbjct: 165 VNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYV 224
Query: 231 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 290
++ ++AL K++ ++YF + Y L +L+++A+ DF GAMEN GL + +LL
Sbjct: 225 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 284
Query: 291 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE--W 348
++S + R+ TVV HE HQ+ GN VT+ W L L EG + ++LF E
Sbjct: 285 KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLT-----VHRENLFSEEMT 339
Query: 349 KIWTQFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRML 408
K T L + L +S P+ H + ++ + Y KG+ V+RM
Sbjct: 340 KTVTTRLSHVDLLRSVQFLEDSSPLSH----PIRPESYVSMENFYTTTVYDKGSEVMRMY 395
Query: 409 QNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS--------WTKQ 460
LG E +++ YIKK + A ED A+E+ + K NS W Q
Sbjct: 396 LTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYK--MKKADNSANLNQYLLWFSQ 453
Query: 461 KGYPVI 466
G P +
Sbjct: 454 SGTPHV 459
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 168/366 (45%), Gaps = 31/366 (8%)
Query: 121 SSYELNG--EKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSEL--VALSNMPV 176
++Y L G + KN+ V+Q E RR D P A + +T+ E V LSN
Sbjct: 106 TNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDK 165
Query: 177 IDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKA 230
++E ++ G + + P+ YL AVV G Y+ +T +++ V+ +
Sbjct: 166 VNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYV 225
Query: 231 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 290
++ ++AL K++ ++YF + Y L +L+++A+ DF GAMEN GL + +LL
Sbjct: 226 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 285
Query: 291 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE--W 348
++S + R+ TVV HE HQ+ GN VT+ W L L EG + ++LF E
Sbjct: 286 KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLT-----VHRENLFSEEMT 340
Query: 349 KIWTQFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRML 408
K T L + L +S P+ H + ++ + Y KG+ V+RM
Sbjct: 341 KTVTTRLSHVDLLRSVQFLEDSSPLSH----PIRPESYVSMENFYTTTVYDKGSEVMRMY 396
Query: 409 QNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS--------WTKQ 460
LG E +++ YIKK + A ED A+E+ + K NS W Q
Sbjct: 397 LTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYK--MKKADNSANLNQYLLWFSQ 454
Query: 461 KGYPVI 466
G P +
Sbjct: 455 SGTPHV 460
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 168/366 (45%), Gaps = 31/366 (8%)
Query: 121 SSYELNG--EKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSEL--VALSNMPV 176
++Y L G + KN+ V+Q E RR D P A + +T+ E V LSN
Sbjct: 106 TNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDK 165
Query: 177 IDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKA 230
++E ++ G + + P+ YL AVV G Y+ +T +++ V+ +
Sbjct: 166 VNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYV 225
Query: 231 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 290
++ ++AL K++ ++YF + Y L +L+++A+ DF GAMEN GL + +LL
Sbjct: 226 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 285
Query: 291 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE--W 348
++S + R+ TVV HE HQ+ GN VT+ W L L EG + ++LF E
Sbjct: 286 KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLT-----VHRENLFSEEMT 340
Query: 349 KIWTQFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRML 408
K T L + L +S P+ H + ++ + Y KG+ V+RM
Sbjct: 341 KTVTTRLSHVDLLRSVQFLEDSSPLSH----PIRPESYVSMENFYTTTVYDKGSEVMRMY 396
Query: 409 QNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS--------WTKQ 460
LG E +++ YIKK + A ED A+E+ + K NS W Q
Sbjct: 397 LTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYK--MKKADNSANLNQYLLWFSQ 454
Query: 461 KGYPVI 466
G P +
Sbjct: 455 SGTPHV 460
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 167/366 (45%), Gaps = 31/366 (8%)
Query: 121 SSYELNG--EKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSEL--VALSNMPV 176
++Y L G + KN+ V+Q E RR D P A + +T+ E V LSN
Sbjct: 105 TNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDK 164
Query: 177 IDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKA 230
++E ++ G + + P+ YL AVV G Y+ +T +++ V+ +
Sbjct: 165 VNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYV 224
Query: 231 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 290
++ ++AL K++ ++YF + Y L +L+++A+ DF GAMEN GL + +LL
Sbjct: 225 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 284
Query: 291 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE--W 348
++S + R+ TVV HE HQ+ GN VT+ W L L EG + ++LF E
Sbjct: 285 KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLT-----VHRENLFSEEMT 339
Query: 349 KIWTQFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRML 408
K T L + L +S P+ H + + + Y KG+ V+RM
Sbjct: 340 KTVTTRLSHVDLLRSVQFLEDSSPLSH----PIRPESYVSMANFYTTTVYDKGSEVMRMY 395
Query: 409 QNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS--------WTKQ 460
LG E +++ YIKK + A ED A+E+ + K NS W Q
Sbjct: 396 LTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYK--MKKADNSANLNQYLLWFSQ 453
Query: 461 KGYPVI 466
G P +
Sbjct: 454 SGTPHV 459
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 114/479 (23%), Positives = 200/479 (41%), Gaps = 70/479 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 17 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 76
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 77 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 121
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEK 180
+G++ +Q + R PC D P+ K T+ + VP ELVAL M I +
Sbjct: 122 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 179
Query: 181 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 240
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 180 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 235
Query: 241 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 299
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 236 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 285
Query: 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWT 352
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E W
Sbjct: 286 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 345
Query: 353 QFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYL 412
+ + + E+HP + +++ D + ++ Y KG +++ L+ L
Sbjct: 346 ELQNS------VKTFGETHPFTKLVVDLTDIDP----DVAYSSVPYEKGFALLFYLEQLL 395
Query: 413 GA-ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 466
G E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 396 GGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 454
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 114/479 (23%), Positives = 200/479 (41%), Gaps = 70/479 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 25 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 84
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 85 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 129
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEK 180
+G++ +Q + R PC D P+ K T+ + VP ELVAL M I +
Sbjct: 130 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 187
Query: 181 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 240
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 188 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 243
Query: 241 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 299
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 244 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 293
Query: 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWT 352
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E W
Sbjct: 294 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 353
Query: 353 QFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYL 412
+ + + E+HP + +++ D + ++ Y KG +++ L+ L
Sbjct: 354 ELQNS------VKTFGETHPFTKLVVDLTDIDP----DVAYSSVPYEKGFALLFYLEQLL 403
Query: 413 GA-ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 466
G E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 404 GGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 462
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 114/479 (23%), Positives = 200/479 (41%), Gaps = 70/479 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 19 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 78
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 79 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 123
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEK 180
+G++ +Q + R PC D P+ K T+ + VP ELVAL M I +
Sbjct: 124 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 181
Query: 181 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 240
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 182 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 237
Query: 241 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 299
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 238 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 287
Query: 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWT 352
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E W
Sbjct: 288 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 347
Query: 353 QFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYL 412
+ + + E+HP + +++ D + ++ Y KG +++ L+ L
Sbjct: 348 ELQNS------VKTFGETHPFTKLVVDLTDIDP----DVAYSSVPYEKGFALLFYLEQLL 397
Query: 413 GA-ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 466
G E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 398 GGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 114/479 (23%), Positives = 200/479 (41%), Gaps = 70/479 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 20 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 79
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 80 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 124
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEK 180
+G++ +Q + R PC D P+ K T+ + VP ELVAL M I +
Sbjct: 125 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 182
Query: 181 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 240
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 183 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 238
Query: 241 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 299
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 239 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 288
Query: 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWT 352
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E W
Sbjct: 289 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 348
Query: 353 QFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYL 412
+ + + E+HP + +++ D + ++ Y KG +++ L+ L
Sbjct: 349 ELQNS------VKTFGETHPFTKLVVDLTDIDP----DVAYSSVPYEKGFALLFYLEQLL 398
Query: 413 GA-ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 466
G E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 399 GGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 457
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 114/479 (23%), Positives = 200/479 (41%), Gaps = 70/479 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 19 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 78
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 79 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 123
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEK 180
+G++ +Q + R PC D P+ K T+ + VP ELVAL M I +
Sbjct: 124 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 181
Query: 181 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 240
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 182 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 237
Query: 241 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 299
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 238 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 287
Query: 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWT 352
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E W
Sbjct: 288 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 347
Query: 353 QFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYL 412
+ + + E+HP + +++ D + ++ Y KG +++ L+ L
Sbjct: 348 ELQNS------VKTFGETHPFTKLVVDLTDIDP----DVAYSSVPYEKGFALLFYLEQLL 397
Query: 413 GA-ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 466
G E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 398 GGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 113/479 (23%), Positives = 200/479 (41%), Gaps = 70/479 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 20 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 79
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 80 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 124
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEK 180
+G++ +Q + R PC D P+ K T+ + VP ELVAL M I +
Sbjct: 125 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 182
Query: 181 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 240
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 183 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 238
Query: 241 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 299
L++ E PY + D++ +P F G M+N L T L A +
Sbjct: 239 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMQNPCLTFVTPTLL---------AGDK 288
Query: 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWT 352
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E W
Sbjct: 289 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 348
Query: 353 QFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYL 412
+ + + E+HP + +++ D + ++ Y KG +++ L+ L
Sbjct: 349 ELQNS------VKTFGETHPFTKLVVDLTDIDP----DVAYSSVPYEKGFALLFYLEQLL 398
Query: 413 GA-ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 466
G E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 399 GGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 457
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 117/481 (24%), Positives = 200/481 (41%), Gaps = 74/481 (15%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 19 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 78
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 79 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 123
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEK 180
+G++ +Q + R PC D P+ K T+ + VP ELVAL M I +
Sbjct: 124 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 181
Query: 181 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 240
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 182 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 237
Query: 241 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 299
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 238 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 287
Query: 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWT 352
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E W
Sbjct: 288 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 347
Query: 353 QFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDE--IFDAISYRKGASVIRMLQN 410
+ + + E+HP F V +ID + ++ Y KG +++ L+
Sbjct: 348 ELQNS------VKTFGETHP------FTKLVVDLTDIDPNVAYSSVPYEKGFALLFYLEQ 395
Query: 411 YLGA-ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPV 465
LG E F L +Y++K++ + T+D L + V+ L N+W G P
Sbjct: 396 LLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPP 455
Query: 466 I 466
I
Sbjct: 456 I 456
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 113/479 (23%), Positives = 200/479 (41%), Gaps = 70/479 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 25 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 84
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 85 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 129
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEK 180
+G++ +Q + R PC D P+ K T+ + VP ELVAL M I +
Sbjct: 130 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 187
Query: 181 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 240
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 188 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 243
Query: 241 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 299
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 244 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 293
Query: 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWT 352
++ V+AH+++H W GNLVT + W H WLNEG ++ LF E W
Sbjct: 294 SLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 353
Query: 353 QFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYL 412
+ + + E+HP + +++ D + ++ Y KG +++ L+ L
Sbjct: 354 ELQNS------VKTFGETHPFTKLVVDLTDIDP----DVAYSSVPYEKGFALLFYLEQLL 403
Query: 413 GA-ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 466
G E F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 404 GGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 462
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 152/365 (41%), Gaps = 29/365 (7%)
Query: 112 NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATF--KITLDVPSELV 169
N ++G Y+S L TQ E R D P A F KI D
Sbjct: 124 NTALEGLYQSGDAL--------CTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPF 175
Query: 170 ALSN-MPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVED----HTSDGIKVRVY 224
LSN V +++ V +Q+ YL A+V G FD + D + + + +Y
Sbjct: 176 LLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELY 235
Query: 225 CQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRET 284
G ++ +A+ +++ +E F + Y L ++A+ F GAMEN GL +
Sbjct: 236 VDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSK 295
Query: 285 ALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344
+L + + + V+ HE H W GN VT W L L EG + D
Sbjct: 296 YVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVF-----RDQE 350
Query: 345 FPEWKIWTQFLDECTEGLRLDGLA---ESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKG 401
F + ++ ++ + GL ++ P+ H + + E++ + Y KG
Sbjct: 351 FSS-DLGSRAVNRINNVRTMRGLQFAEDASPMAH----PIRPDMVIEMNNFYTLTVYEKG 405
Query: 402 ASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQK 461
A VIRM+ LG E FQ+ + Y +++ S A +D A+E+ S ++ W Q
Sbjct: 406 AEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHF-RRWYSQS 464
Query: 462 GYPVI 466
G P++
Sbjct: 465 GTPIV 469
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 152/365 (41%), Gaps = 29/365 (7%)
Query: 112 NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATF--KITLDVPSELV 169
N ++G Y+S L TQ E R D P A F KI D
Sbjct: 103 NTALEGLYQSGDAL--------CTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPF 154
Query: 170 ALSN-MPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVED----HTSDGIKVRVY 224
LSN V +++ V +Q+ YL A+V G FD + D + + + +Y
Sbjct: 155 LLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELY 214
Query: 225 CQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRET 284
G ++ +A+ +++ +E F + Y L ++A+ F GAMEN GL +
Sbjct: 215 VDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSK 274
Query: 285 ALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344
+L + + + V+ HE H W GN VT W L L EG + D
Sbjct: 275 YVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVF-----RDQE 329
Query: 345 FPEWKIWTQFLDECTEGLRLDGLA---ESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKG 401
F + ++ ++ + GL ++ P+ H + + E++ + Y KG
Sbjct: 330 FSS-DLGSRAVNRINNVRTMRGLQFAEDASPMAH----PIRPDMVIEMNNFYTLTVYEKG 384
Query: 402 ASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQK 461
A VIRM+ LG E FQ+ + Y +++ S A +D A+E+ S ++ W Q
Sbjct: 385 AEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHF-RRWYSQS 443
Query: 462 GYPVI 466
G P++
Sbjct: 444 GTPIV 448
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 152/365 (41%), Gaps = 29/365 (7%)
Query: 112 NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATF--KITLDVPSELV 169
N ++G Y+S L TQ + R D P A F KI D
Sbjct: 124 NTALEGLYQSGDAL--------CTQCQAEGFRHITYYLDRPDVLARFTTKIIADKIKYPF 175
Query: 170 ALSN-MPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVED----HTSDGIKVRVY 224
LSN V +++ V +Q+ YL A+V G FD + D + + + +Y
Sbjct: 176 LLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELY 235
Query: 225 CQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRET 284
G ++ +A+ +++ +E F + Y L ++A+ F GAMEN GL +
Sbjct: 236 VDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSK 295
Query: 285 ALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344
+L + + + V+ HE H W GN VT W L L EG + D
Sbjct: 296 YVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVF-----RDQE 350
Query: 345 FPEWKIWTQFLDECTEGLRLDGLA---ESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKG 401
F + ++ ++ + GL ++ P+ H + + E++ + Y KG
Sbjct: 351 FSS-DLGSRAVNRINNVRTMRGLQFAEDASPMAH----PIRPDMVIEMNNFYTLTVYEKG 405
Query: 402 ASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQK 461
A VIRM+ LG E FQ+ + Y +++ S A +D A+E+ S ++ W Q
Sbjct: 406 AEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHF-RRWYSQS 464
Query: 462 GYPVI 466
G P++
Sbjct: 465 GTPIV 469
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 131/320 (40%), Gaps = 44/320 (13%)
Query: 130 KNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVS 189
K +Q E AR FPC+D P+ K+TF +++ P +V S + + D D N+
Sbjct: 139 KPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESPLPVV-FSGIRIEDTSKDTNIYRFE 197
Query: 190 YQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVR--VYCQVGKANQGKFALNVAVKTLELY 247
Q+ PI YL+ + G D +S I R VY + + ++ V+
Sbjct: 198 -QKVPI-PAYLIGIASG------DLSSAPIGPRSTVYTEPFRLKDCQWEFENDVEKFIQT 249
Query: 248 KEYFAVPYSLPKLD-MIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVA 306
E Y D ++ + + G ME+ + T L +D + V+A
Sbjct: 250 AEKIIFEYEWGTYDILVNVDSYPYGGMESPNMTFATPTLLAHDRSN---------IDVIA 300
Query: 307 HELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE----------WKIWTQFLD 356
HELAH W GNLVT W H WLNEG+ ++ ++ E W +D
Sbjct: 301 HELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSID 360
Query: 357 ECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC 416
+ R L ++ +N + D+ F + Y KG +++ L+ LG +
Sbjct: 361 SMKDPERFSTLVQN------------LNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKA 408
Query: 417 -FQRSLASYIKKYACSNAKT 435
F + Y KK+A + T
Sbjct: 409 EFDPFIRHYFKKFAKKSLDT 428
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 131/320 (40%), Gaps = 44/320 (13%)
Query: 130 KNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVS 189
K +Q E AR FPC+D P+ K+TF +++ P +V S + + D D N+
Sbjct: 139 KPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESPLPVV-FSGIRIEDTSKDTNIYRFE 197
Query: 190 YQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVR--VYCQVGKANQGKFALNVAVKTLELY 247
Q+ PI YL+ + G D +S I R VY + + ++ V+
Sbjct: 198 -QKVPI-PAYLIGIASG------DLSSAPIGPRSTVYTEPFRLKDCQWEFENDVEKFIQT 249
Query: 248 KEYFAVPYSLPKLD-MIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVA 306
E Y D ++ + + G ME+ + T + +D + V+A
Sbjct: 250 AEKIIFEYEWGTYDILVNVDSYPYGGMESPNMTFATPTLIAHDRSN---------IDVIA 300
Query: 307 HELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE----------WKIWTQFLD 356
HELAH W GNLVT W H WLNEG+ ++ ++ E W +D
Sbjct: 301 HELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSID 360
Query: 357 ECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC 416
+ R L ++ +N + D+ F + Y KG +++ L+ LG +
Sbjct: 361 SMKDPERFSTLVQN------------LNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKA 408
Query: 417 -FQRSLASYIKKYACSNAKT 435
F + Y KK+A + T
Sbjct: 409 EFDPFIRHYFKKFAKKSLDT 428
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 106/459 (23%), Positives = 181/459 (39%), Gaps = 49/459 (10%)
Query: 21 IRLTPDLTSCKFGGSVAIDVDVVGDTKF-IVLNAADLTINNRSVSFTNKVSSKALEPTKV 79
+ L D G + +D D K ++L+ DL I+ K S
Sbjct: 33 LDLNVDFDKKSLSGFAELSLDWFTDNKAPLILDTRDLVIHR----VMAKNSQGQWVKVNY 88
Query: 80 ELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGF-YRSSYELNGEKKNMAVTQFE 138
+L + D++L + P + + + +K G + S+ + G++K +Q +
Sbjct: 89 DLAKRDDVLGSKLTINTPLNAKKVRVYYNST--EKATGLQWLSAEQTAGKEKPFLFSQNQ 146
Query: 139 PADARRCFPCWDEPACKATFKITLDVPSELVAL---SNMPVIDEKVDGNMKTVSYQESPI 195
AR P D P+ + T+ + +L+A+ +N P + DG+ Q P
Sbjct: 147 AIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPGTER--DGDYFFSMPQAIP- 203
Query: 196 MSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPY 255
YL+A+ +G ++ GI Y + + K ++Y +Y Y
Sbjct: 204 --PYLIAIGVGDLEFKAMSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYGKYRWGRY 261
Query: 256 SLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315
L ++ P F G MEN L T + A + + ++AHELAH W G
Sbjct: 262 DL----LMLPPSFPFGGMENPRLSFITPTVV---------AGDKSLVNLIAHELAHSWSG 308
Query: 316 NLVTMEWWTHLWLNEGFATWVSYLAADSLF-PEWKIWTQFL---DECTEGLRLDGLAESH 371
NLVT E W LWLNEGF ++V +++F + + Q L D E L LD
Sbjct: 309 NLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQDLNAEILELDA----- 363
Query: 372 PIEHIGSFQVEVNHTG-EIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYAC 430
Q+ ++ G + D+ F + Y KG + L+ G E F + Y +A
Sbjct: 364 -----SDTQLYIDLKGRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAF 418
Query: 431 SNAKTEDLWAALEEGSGEPVNKL-----MNSWTKQKGYP 464
+ T++ L+ + + +N W + G P
Sbjct: 419 QSLGTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLP 457
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 151/371 (40%), Gaps = 41/371 (11%)
Query: 112 NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITL--DVPSELV 169
N + G Y S L TQ EP R+ D P + F T+ D V
Sbjct: 99 NKSLXGLYASGGNL--------FTQCEPEGFRKITFYIDRPDVXSKFTTTIVADKKRYPV 150
Query: 170 ALSNMPVID--EKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH--TSDGIKVRVYC 225
LSN ID E DG V +++ +YL A+V G ED+ T G V++
Sbjct: 151 LLSNGNKIDGGEFSDGR-HWVKWEDPFSKPSYLFALVAGDLAVTEDYFTTXSGRNVKIEF 209
Query: 226 QVGKANQGKFALNV-AVKTLELYKE-YFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRE 283
+A++ K V ++K + E F + Y L ++A+ DF GA EN GL +
Sbjct: 210 YTTEADKPKVGFAVESLKNAXKWDETRFGLEYDLDIFXVVAVGDFNXGAXENKGLNIFNT 269
Query: 284 TALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343
+L D + + + + + +VV HE H W GN VT W L L EG + D
Sbjct: 270 KFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVF-----RDQ 324
Query: 344 LFPEWKIWTQFLDECTEGLRL--------DGLAESHPIEHIGSFQVEVNHTGEIDEIFDA 395
F + E +RL D +HP+ S++ E + +
Sbjct: 325 EFSGDRASRAV--RRIENIRLLRQHQFPEDAGPTAHPV-RPASYE-------EXNNFYTX 374
Query: 396 ISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMN 455
Y KGA V+R LG E FQ+ Y +++ +D AA + +G +++
Sbjct: 375 TVYEKGAEVVRXYHTLLGEEGFQKGXKLYFQRHDGQAVTCDDFRAAXADANGINLDQFA- 433
Query: 456 SWTKQKGYPVI 466
W Q G PV+
Sbjct: 434 LWYSQAGTPVL 444
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 172/396 (43%), Gaps = 46/396 (11%)
Query: 486 GSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVN 544
G+P G W VP+T D+ FLL K+D + E + WIK NV
Sbjct: 27 GAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEVE-----------WIKFNVG 75
Query: 545 QTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFALCMARQQTLTSLLTLMAS 602
G+Y V Y+ D L ++ +S DR ++++ F L + ++ L L
Sbjct: 76 MNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLY 135
Query: 603 YSEETE----YTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKP 658
ETE + L+ LI + YK+ + E+ K F I L ++ +K W +
Sbjct: 136 LKHETEIMPVFQGLNELIPM-YKL--MEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEG 192
Query: 659 GESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQK 718
S + +LR ++ + ++ + A F + LP D+ A +
Sbjct: 193 SVS--ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFA----- 245
Query: 719 VSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLL-----SSEVRS 773
V A G++ L Y+ + S EK++I A C N E L +LL ++++
Sbjct: 246 VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFALCRTQNK--EKLQWLLDESFKGDKIKT 301
Query: 774 QDAVYGLAVSIEGRE-----TAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEK 827
Q+ + +++ GR AW++L+ NW+ + + + G I + + F++ +
Sbjct: 302 QE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTR 359
Query: 828 VREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 862
+ EV+ FFSS + R ++Q+IE ++ N W++
Sbjct: 360 LEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMD 395
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 734 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 787
Y E D S +IL ++ C + +V L+ N LL+S+++ + A +GLA+ +EG
Sbjct: 118 YSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGE 177
Query: 788 ETAW 791
+ AW
Sbjct: 178 QQAW 181
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 734 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 787
Y E D S +IL ++ C + +V L+ N LL+S+++ + A +GLA+ +EG
Sbjct: 107 YSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGE 166
Query: 788 ETAW 791
+ AW
Sbjct: 167 QQAW 170
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 734 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 787
Y E D S +IL ++ C + +V L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGD 159
Query: 788 ETAW 791
+ AW
Sbjct: 160 QQAW 163
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 734 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 787
Y E D S +IL S+ C IV L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGD 159
Query: 788 ETAW 791
+ AW
Sbjct: 160 QQAW 163
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 734 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 787
Y E D S +IL S+ C IV L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGD 159
Query: 788 ETAW 791
+ AW
Sbjct: 160 QQAW 163
>pdb|1WNI|A Chain A, Crystal Structure Of H2-Proteinase
Length = 201
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 213 DHTSDGIKVRVYCQVGKANQGKFALNVAV--KTLELYKEYFAVPYSLPKLDMIAIPDFAA 270
+ SD IKVRV+ V N+ LN+A+ L+++ K D+I + +
Sbjct: 23 NQNSDKIKVRVHQMVNHINEMYRPLNIAISLNRLQIWS----------KKDLITVKSASN 72
Query: 271 GAMENYGLVTYRETALLYDDQHSAA 295
+E++G +RET LL + A
Sbjct: 73 VTLESFG--NWRETVLLKQQNNDCA 95
>pdb|3SK1|A Chain A, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|B Chain B, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|C Chain C, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|D Chain D, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK2|A Chain A, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087 In Complex With Griseoluteic
Acid
pdb|3SK2|B Chain B, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087 In Complex With Griseoluteic
Acid
Length = 132
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 446 SGEPVNKLMNSWTKQKGYPVI 466
+GE V+KL N WTKQK + +I
Sbjct: 82 TGEDVDKLFNEWTKQKSHQII 102
>pdb|1R8W|A Chain A, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R8W|B Chain B, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|A Chain A, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|B Chain B, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
Length = 787
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 771 VRSQDAVYGLAVSIEGR------ETAWKWLKDNWDHISKTWGSGFLITRFISSIVSPFAS 824
+R Q+ + G +++ E R E + KWL+D D ++K G F I+ S
Sbjct: 66 IRDQELIVG-SLTKEPRSSQVFPEFSNKWLQDELDRLNKRTGDAFQISE---------ES 115
Query: 825 YEKVREVEEFFSSRCKPYIARTLRQSIERVQIN 857
EK+++V E+++ + +A + R +N
Sbjct: 116 KEKLKDVFEYWNGKTTSELATSYMTEETREAVN 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,342,933
Number of Sequences: 62578
Number of extensions: 1033533
Number of successful extensions: 2657
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2495
Number of HSP's gapped (non-prelim): 53
length of query: 882
length of database: 14,973,337
effective HSP length: 107
effective length of query: 775
effective length of database: 8,277,491
effective search space: 6415055525
effective search space used: 6415055525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)