Query 002775
Match_columns 882
No_of_seqs 369 out of 2442
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 5E-153 1E-157 1373.4 83.6 845 5-878 26-881 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 3E-126 5E-131 1146.0 83.4 795 13-862 13-830 (831)
3 COG0308 PepN Aminopeptidase N 100.0 3.3E-93 7.2E-98 856.8 68.4 817 8-864 11-856 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 6.5E-84 1.4E-88 764.7 77.2 709 11-769 4-766 (863)
5 PRK14015 pepN aminopeptidase N 100.0 4.5E-83 9.7E-88 760.1 75.9 710 11-769 16-776 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 9.1E-77 2E-81 687.3 41.8 426 10-471 7-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 2.1E-74 4.5E-79 650.8 38.0 385 9-401 1-390 (390)
8 KOG1047 Bifunctional leukotrie 100.0 3.6E-55 7.8E-60 465.1 28.4 433 11-468 13-459 (613)
9 PF11838 ERAP1_C: ERAP1-like C 100.0 2.6E-51 5.7E-56 450.9 28.6 313 538-855 1-324 (324)
10 KOG1932 TATA binding protein a 100.0 8.3E-35 1.8E-39 331.4 36.4 433 16-470 27-505 (1180)
11 COG3975 Predicted protease wit 99.3 1.2E-10 2.6E-15 126.0 19.9 255 218-481 169-447 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.2 5.9E-11 1.3E-15 111.1 7.2 106 299-424 23-128 (128)
13 PF10460 Peptidase_M30: Peptid 97.7 0.00092 2E-08 72.0 16.2 222 216-461 16-285 (366)
14 PF11940 DUF3458: Domain of un 96.4 0.49 1.1E-05 52.1 21.3 304 474-808 6-344 (367)
15 PF05299 Peptidase_M61: M61 gl 96.3 0.0015 3.4E-08 59.1 1.4 43 301-343 4-57 (122)
16 PF04450 BSP: Peptidase of pla 96.1 0.11 2.3E-06 52.2 13.1 171 236-456 26-204 (205)
17 PF07607 DUF1570: Protein of u 95.9 0.0046 9.9E-08 56.6 2.1 39 303-341 3-43 (128)
18 PF10026 DUF2268: Predicted Zn 91.3 0.66 1.4E-05 46.5 7.5 100 239-345 4-113 (195)
19 smart00638 LPD_N Lipoprotein N 90.7 4.3 9.3E-05 48.4 15.0 198 555-769 356-560 (574)
20 PRK04860 hypothetical protein; 89.5 0.85 1.8E-05 43.8 6.1 70 236-314 5-76 (160)
21 COG4324 Predicted aminopeptida 84.7 0.93 2E-05 45.8 3.5 40 299-344 195-234 (376)
22 PF01863 DUF45: Protein of unk 83.7 6.5 0.00014 39.7 9.5 92 235-353 109-200 (205)
23 PF10023 DUF2265: Predicted am 83.1 1.2 2.6E-05 47.8 3.7 39 300-344 164-202 (337)
24 smart00731 SprT SprT homologue 81.1 1.7 3.7E-05 41.3 3.8 67 242-315 5-73 (146)
25 PF01347 Vitellogenin_N: Lipop 76.8 23 0.00051 42.5 12.7 196 556-768 395-603 (618)
26 PF03272 Enhancin: Viral enhan 74.2 1.1E+02 0.0024 37.6 17.0 129 303-457 238-377 (775)
27 PF12725 DUF3810: Protein of u 73.8 4.1 8.8E-05 44.2 4.5 31 301-343 196-226 (318)
28 COG2719 SpoVR Uncharacterized 67.8 35 0.00077 37.6 9.7 54 300-359 248-301 (495)
29 PF01447 Peptidase_M4: Thermol 63.8 11 0.00023 36.0 4.5 74 231-312 67-146 (150)
30 PF13646 HEAT_2: HEAT repeats; 62.9 12 0.00026 31.5 4.4 75 665-751 14-88 (88)
31 PF12315 DUF3633: Protein of u 60.0 13 0.00028 37.0 4.3 41 301-343 93-133 (212)
32 PF04234 CopC: CopC domain; I 59.4 69 0.0015 27.9 8.6 62 45-109 18-82 (97)
33 COG4783 Putative Zn-dependent 55.6 11 0.00024 42.2 3.5 53 256-313 90-142 (484)
34 PF01435 Peptidase_M48: Peptid 55.3 9.3 0.0002 39.1 2.8 70 242-320 35-108 (226)
35 PF10989 DUF2808: Protein of u 52.6 39 0.00085 32.0 6.3 47 72-120 75-122 (146)
36 PRK04351 hypothetical protein; 52.5 11 0.00023 35.9 2.4 15 298-312 58-72 (149)
37 COG3227 LasB Zinc metalloprote 51.3 24 0.00053 39.4 5.2 107 227-340 265-377 (507)
38 COG1451 Predicted metal-depend 49.1 1.1E+02 0.0023 31.5 9.2 93 234-353 119-211 (223)
39 PF06114 DUF955: Domain of unk 47.2 15 0.00033 32.8 2.6 18 301-318 42-59 (122)
40 PF10263 SprT-like: SprT-like 46.5 14 0.0003 35.4 2.3 18 298-315 57-74 (157)
41 KOG1991 Nuclear transport rece 44.4 3E+02 0.0065 34.1 12.9 137 571-709 102-252 (1010)
42 PF08325 WLM: WLM domain; Int 44.0 82 0.0018 31.2 7.2 23 295-317 76-98 (186)
43 PRK03001 M48 family peptidase; 43.8 37 0.0008 36.3 5.2 68 240-316 69-139 (283)
44 COG0501 HtpX Zn-dependent prot 43.1 44 0.00095 35.9 5.8 67 245-319 106-175 (302)
45 PRK02870 heat shock protein Ht 39.7 60 0.0013 35.5 6.0 64 241-312 118-184 (336)
46 PF04597 Ribophorin_I: Ribopho 38.5 2.8E+02 0.006 31.6 11.4 86 24-109 10-103 (432)
47 PRK03982 heat shock protein Ht 38.2 62 0.0013 34.6 5.9 68 240-316 70-140 (288)
48 PF13699 DUF4157: Domain of un 38.1 43 0.00092 28.0 3.6 64 242-313 5-73 (79)
49 PRK04897 heat shock protein Ht 37.9 67 0.0015 34.6 6.1 68 240-316 82-152 (298)
50 cd04269 ZnMc_adamalysin_II_lik 37.7 92 0.002 30.9 6.8 14 300-313 130-143 (194)
51 PRK05457 heat shock protein Ht 37.6 63 0.0014 34.5 5.8 69 240-317 79-150 (284)
52 COG0362 Gnd 6-phosphogluconate 37.3 1.8E+02 0.004 32.2 8.9 117 572-709 312-443 (473)
53 PRK09687 putative lyase; Provi 37.0 5.4E+02 0.012 27.3 16.4 90 666-766 143-232 (280)
54 PRK01345 heat shock protein Ht 37.0 75 0.0016 34.5 6.3 69 240-317 69-140 (317)
55 COG2372 CopC Uncharacterized p 35.9 1E+02 0.0022 28.3 5.7 60 47-109 47-110 (127)
56 PF13574 Reprolysin_2: Metallo 35.8 23 0.00051 34.6 2.0 13 301-313 111-123 (173)
57 PF14675 FANCI_S1: FANCI solen 35.7 87 0.0019 32.0 6.1 116 574-694 4-123 (223)
58 PHA02456 zinc metallopeptidase 35.3 25 0.00055 30.7 1.8 14 300-313 78-91 (141)
59 PRK03072 heat shock protein Ht 34.5 78 0.0017 33.9 5.9 69 239-316 71-142 (288)
60 COG3091 SprT Zn-dependent meta 33.8 60 0.0013 30.5 4.1 67 239-312 6-72 (156)
61 PF01431 Peptidase_M13: Peptid 33.5 42 0.00091 33.8 3.5 33 287-319 22-54 (206)
62 PF10805 DUF2730: Protein of u 32.7 1.7E+02 0.0037 26.0 6.8 74 790-865 1-88 (106)
63 KOG2062 26S proteasome regulat 32.5 95 0.0021 36.9 6.2 127 659-794 494-629 (929)
64 PF12174 RST: RCD1-SRO-TAF4 (R 32.0 91 0.002 25.4 4.4 47 401-448 11-57 (70)
65 PRK02391 heat shock protein Ht 31.2 1E+02 0.0022 33.1 6.2 69 240-317 78-149 (296)
66 PRK10301 hypothetical protein; 31.0 2.6E+02 0.0057 25.6 7.9 26 84-109 84-109 (124)
67 PRK01265 heat shock protein Ht 30.4 98 0.0021 33.7 5.8 66 241-315 86-154 (324)
68 PF13205 Big_5: Bacterial Ig-l 27.7 3.8E+02 0.0082 23.2 8.4 26 83-108 59-85 (107)
69 PRK15245 type III effector pho 27.5 1.8E+02 0.004 28.8 6.3 116 148-284 90-215 (241)
70 cd04279 ZnMc_MMP_like_1 Zinc-d 27.4 1.7E+02 0.0038 27.8 6.5 36 219-254 2-40 (156)
71 PF08014 DUF1704: Domain of un 26.7 2.1E+02 0.0045 31.6 7.5 83 243-340 118-213 (349)
72 KOG2661 Peptidase family M48 [ 26.7 43 0.00094 35.6 2.2 20 298-317 272-291 (424)
73 PLN03081 pentatricopeptide (PP 26.7 9.6E+02 0.021 29.2 14.4 135 667-821 362-507 (697)
74 PF14524 Wzt_C: Wzt C-terminal 26.3 1.8E+02 0.0038 26.8 6.3 25 83-107 83-107 (142)
75 PF13646 HEAT_2: HEAT repeats; 26.2 65 0.0014 26.9 2.9 62 704-769 13-74 (88)
76 cd04272 ZnMc_salivary_gland_MP 25.6 1.6E+02 0.0036 29.9 6.3 13 301-313 145-157 (220)
77 PF00046 Homeobox: Homeobox do 24.3 2.5E+02 0.0055 21.2 5.7 45 823-877 7-51 (57)
78 PF09836 DUF2063: Uncharacteri 23.0 48 0.001 28.7 1.5 29 408-436 55-83 (94)
79 PF03715 Noc2: Noc2p family; 23.0 1.9E+02 0.0041 31.1 6.3 50 829-878 228-285 (299)
80 PRK09687 putative lyase; Provi 22.9 9.3E+02 0.02 25.5 18.4 166 665-854 105-277 (280)
81 PF01421 Reprolysin: Reprolysi 22.8 94 0.002 31.0 3.8 14 299-312 129-142 (199)
82 PLN03218 maturation of RBCL 1; 22.6 1.7E+03 0.038 28.7 16.8 25 742-766 686-710 (1060)
83 PF14734 DUF4469: Domain of un 22.5 3.4E+02 0.0073 24.0 6.6 27 83-109 61-89 (102)
84 KOG1967 DNA repair/transcripti 22.4 1.6E+03 0.034 28.1 16.1 129 671-807 174-308 (1030)
85 PF09768 Peptidase_M76: Peptid 21.8 3E+02 0.0065 26.9 6.8 26 297-322 67-92 (173)
86 PF12069 DUF3549: Protein of u 21.2 3.8E+02 0.0083 29.2 8.0 95 671-776 172-267 (340)
87 smart00638 LPD_N Lipoprotein N 21.1 7.2E+02 0.016 29.5 11.5 64 666-736 341-404 (574)
88 PF05596 Taeniidae_ag: Taeniid 20.9 3.2E+02 0.007 21.9 5.5 49 824-876 12-60 (64)
89 KOG1077 Vesicle coat complex A 20.2 1.2E+03 0.026 28.1 12.0 62 734-795 412-488 (938)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-153 Score=1373.44 Aligned_cols=845 Identities=48% Similarity=0.778 Sum_probs=778.0
Q ss_pred CCCCCCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCceeeEEEEeeccCCCCccccceeEEEecC
Q 002775 5 KGQPRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEA 84 (882)
Q Consensus 5 ~~~~rLp~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~ 84 (882)
...+|||++|+|+||+|.|.+++....|.|++.|.+.+.++|+.|+||+.++.|.++.+.....................
T Consensus 26 ~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (882)
T KOG1046|consen 26 PNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKEQE 105 (882)
T ss_pred cccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccccccccccc
Confidence 36789999999999999999999999999999999999999999999999999999998653221111111111111111
Q ss_pred CeEEEEEeCCccCCc-eEEEEEEEEeeeCCCCceeEEeeecc-CCeeeeeeeccCCCCCCCceeeccCCCCCceEEEEEE
Q 002775 85 DEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL-NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITL 162 (882)
Q Consensus 85 ~~~l~i~~~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~-~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l~i 162 (882)
+.+.+.+++++.+| +|+|+|.|.|.+++++.|||+++|.+ .+.++++++|||||++||++|||||||++||+|.|+|
T Consensus 106 -~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl 184 (882)
T KOG1046|consen 106 -ETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTITL 184 (882)
T ss_pred -eEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEEEE
Confidence 67888999999999 89999999999999999999999987 5666999999999999999999999999999999999
Q ss_pred EeCCCCeEeecCCccce-eecCCeEEEEEEcCCCccceEEEEEEecceeeeccccCCeEEEEEEcCCchhhHHHHHHHHH
Q 002775 163 DVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAV 241 (882)
Q Consensus 163 ~~p~~~~a~sn~~~~~~-~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~~ 241 (882)
.||++++|+||||+.++ ..++++++++|++||+||||++||+||+|++.+..+.+|+++++|++|+...+++++++.++
T Consensus 185 ~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~ 264 (882)
T KOG1046|consen 185 VHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVAT 264 (882)
T ss_pred EecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHH
Confidence 99999999999999876 45555999999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCccccc
Q 002775 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTME 321 (882)
Q Consensus 242 ~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~ 321 (882)
++|+||+++||+|||+||+|+|++|+|..|||||||||+|+|..+|+++..++..++++++.+||||+|||||||+|||+
T Consensus 265 ~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~ 344 (882)
T KOG1046|consen 265 KVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMK 344 (882)
T ss_pred HHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHHH-HHHhhhcccCCccccccCccceecCCccccccccccccccc
Q 002775 322 WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRK 400 (882)
Q Consensus 322 ~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~~~~~~~f~~i~Y~K 400 (882)
||+|+|||||||+|+++++++..+|+|..+++++...+ .++..|++.++||+. .++.++.+|.+.||.|+|.|
T Consensus 345 wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~------~~v~~~~ei~e~fd~i~Y~K 418 (882)
T KOG1046|consen 345 WWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPIS------VPVESPSEIDEIFDEISYQK 418 (882)
T ss_pred hhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCee------eecCCcchhhhhhhhhhhhH
Confidence 99999999999999999999999999999999887777 579999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHhhhcCCCcceEEEEEeCcEEEEEEE
Q 002775 401 GASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQS 480 (882)
Q Consensus 401 ga~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~d~~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~~~~~l~Q~ 480 (882)
|++|+|||+..+|++.|++||+.||.+|+|+|++++|||++|+...+.+++++|+.|+.|+|||+|+|.++++.++++|+
T Consensus 419 GasvlRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~ 498 (882)
T KOG1046|consen 419 GASVLRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQE 498 (882)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehh
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred eeccCCC--CCCCeeEEEEEEEECcccceeeEEeeccceEEEecccccccccCCCCCCceEEeCcCceeEEEEEcCHHHH
Q 002775 481 QFLSSGS--PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLA 558 (882)
Q Consensus 481 rf~~~~~--~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w 558 (882)
||..... .....|+||++|.+.+.+.....++..++.++.++. .+ +||++|.++.|||||+||+++|
T Consensus 499 rf~~~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~--~wi~~N~~~~g~yRV~Yd~~~w 567 (882)
T KOG1046|consen 499 RFLSDPDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD--QWIKVNLEQTGYYRVNYDDENW 567 (882)
T ss_pred hhccCCCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--eEEEEeCCcceEEEEEeCHHHH
Confidence 9998764 234599999999987665445677887777777753 33 6999999999999999999999
Q ss_pred HHHHHHHHc-cCCChhhHHHHHHHHHHHHHhccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChHHHHHH
Q 002775 559 ARLGYAIEM-KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYL 637 (882)
Q Consensus 559 ~~l~~~L~~-~~i~~~~ra~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~ 637 (882)
+.|+++|.. ..+++.+|++||+|+|+|+++|+++++.+|+++.||.+|++|.||..++..|..+.. +.. .+.+..+
T Consensus 568 ~~l~~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~--~~~~~~~ 644 (882)
T KOG1046|consen 568 ALLIEQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LED--TEIYSKF 644 (882)
T ss_pred HHHHHHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-ccc--chHHHHH
Confidence 999999976 789999999999999999999999999999999999999999999999999999888 444 5688999
Q ss_pred HHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeee
Q 002775 638 KQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQ 717 (882)
Q Consensus 638 ~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~ 717 (882)
+.|+++++.++++++||.....++ ....+|..++..||..|+++|.+.|..+|+.|+.+ ++.+|+++|.+|||.++
T Consensus 645 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~--~~~ip~~lr~~vy~~~~- 720 (882)
T KOG1046|consen 645 KEFVKKLILPIFEKLGWSDGADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAG--TNPIPPDLREVVYCTAV- 720 (882)
T ss_pred HHHHHHHHHHHHHHhcCCccccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc--CCCCChhhhhhhhhHHH-
Confidence 999999999999999998754443 77899999999999999999999999999999987 78899999998887655
Q ss_pred ecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-CcCCcccceeeee-eccc--cHHHHHHH
Q 002775 718 KVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLS-SEVRSQDAVYGLA-VSIE--GRETAWKW 793 (882)
Q Consensus 718 ~v~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~-~~i~~qd~~~~~~-v~~~--g~~~~~~f 793 (882)
++|+++.|++++++|+++....||..+++||+|+++++.++++|++.++ ..++.||....+. ++.| |..+||+|
T Consensus 721 --~~g~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~g~~~a~~~ 798 (882)
T KOG1046|consen 721 --QFGTEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPRGVELAWKF 798 (882)
T ss_pred --HhcCHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHHHHHhcCcccHHHHHHH
Confidence 5899999999999999999999999999999999999999999999888 4699999999988 7776 99999999
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHH
Q 002775 794 LKDNWDHISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEA 873 (882)
Q Consensus 794 l~~n~~~i~~~~~~~~~l~~~i~~~~~~~~t~~~l~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~w 873 (882)
+..||+.+.++|++.+.+.+++..++..+.++.+++++++||...+..+..+++++++|+++.|+.|.+++.+. +.+|
T Consensus 799 ~~~n~~~l~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~le~~~~ni~W~~~~~~~--l~~~ 876 (882)
T KOG1046|consen 799 LQDNWKELLNRYGNNFELSRLISFITEPFATEEKLDEVEKFFADIPKTGAERALQQALETVKANIQWVERNEEN--LTQW 876 (882)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhHHHhhHHH--HHHH
Confidence 99999999999996688999999999999999999999999998876666899999999999999999999999 9999
Q ss_pred HHHhh
Q 002775 874 VKELA 878 (882)
Q Consensus 874 l~~~~ 878 (882)
|.+..
T Consensus 877 l~~~~ 881 (882)
T KOG1046|consen 877 LLEAL 881 (882)
T ss_pred HHHhc
Confidence 98753
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=2.5e-126 Score=1145.98 Aligned_cols=795 Identities=23% Similarity=0.323 Sum_probs=667.4
Q ss_pred CceeeeEEEEEEecCCCC--eEEEEEEEEEEEECCCCEEEEEecCceeeEEEEeeccCCCCccccceeEEEecCCeEEEE
Q 002775 13 FAVPKRYDIRLTPDLTSC--KFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (882)
Q Consensus 13 ~v~p~~Y~l~l~~d~~~~--~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (882)
.+.+.||+|.|+++.+.. .+.|+++|++++.++++.|.||+.+++|.+|++++. ..+.....+ ..|
T Consensus 13 ~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~----------~~~~~~~~~--~~i 80 (831)
T TIGR02412 13 LITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGI----------LDVAPVYDG--SRI 80 (831)
T ss_pred hccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCc----------ccCccccCC--CEE
Confidence 467999999999986554 558999999999888999999999999999998641 111122222 346
Q ss_pred EeCCccCCceEEEEEEEEeeeCCCCceeEEeeeccCCeeeeeeeccCCCCCCCceeeccCCCCCceEEEEEEEeCCCCeE
Q 002775 91 EFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVA 170 (882)
Q Consensus 91 ~~~~~l~~g~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~~~~a 170 (882)
.++. |++|.++|+|.|.+.+++.+.|+|+..+..+|+ +++.|||||.+||+||||||||++||+|+++|++|++|+|
T Consensus 81 ~l~~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g~--~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v 157 (831)
T TIGR02412 81 PLPG-LLTGENTLRVEATRAYTNTGEGLHRFVDPVDGE--VYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTV 157 (831)
T ss_pred EccC-CCCCceEEEEEEEEEecCCCceEEEEEeCCCCe--EEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceE
Confidence 6665 777889999999999999999999965544553 7889999999999999999999999999999999999999
Q ss_pred eecCCccceeecCCeEEEEEEcCCCccceEEEEEEecceeeeccccCCeEEEEEEcCCchhh--HHHHHHHHHHHHHHHH
Q 002775 171 LSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQ--GKFALNVAVKTLELYK 248 (882)
Q Consensus 171 ~sn~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~--~~~~l~~~~~~l~~~e 248 (882)
+|||++.+....++.++++|++|||||||++||++|+|+.++. ..+|+++++|++|+..+. ++++++.+.++|++||
T Consensus 158 ~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~-~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e 236 (831)
T TIGR02412 158 ISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQD-ESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFH 236 (831)
T ss_pred ECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEee-cCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999987765556678899999999999999999999999874 356899999999987654 5789999999999999
Q ss_pred HHhCCCCCCCCcceeecCCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCccccccchhhhh
Q 002775 249 EYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWL 328 (882)
Q Consensus 249 ~~~g~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL 328 (882)
++||+|||++|+|+|++|+|..|||||||+|+|+|. +++++. .+...++.++.+|+||+|||||||+|||+||+|+||
T Consensus 237 ~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWL 314 (831)
T TIGR02412 237 RKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWL 314 (831)
T ss_pred HHhCCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhH
Confidence 999999999999999999999999999999999999 555544 345667788999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhCcchhHHHHHHHHHH-HHHhhhcccCCccccccCccceecCCccccccccccccccchhHHHHH
Q 002775 329 NEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRM 407 (882)
Q Consensus 329 ~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~~~~~~~f~~i~Y~Kga~vl~m 407 (882)
|||||+||+++++++.+|.+..+..|..... .++..|+..++||+. .++.++.++...||.++|.||++||||
T Consensus 315 nEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~------~~~~~~~~~~~~fd~isY~KGa~vL~m 388 (831)
T TIGR02412 315 NESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIV------ADVADLADALSNFDGITYAKGASVLKQ 388 (831)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCc------cCCCCHHHHHHhccCccchhHHHHHHH
Confidence 9999999999999999999998888876554 668889999999999 888888888899999999999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHhhhcCCCcceEEEEEe--CcEEE-EEEEeecc
Q 002775 408 LQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVK--EEKLE-LEQSQFLS 484 (882)
Q Consensus 408 L~~~lG~~~F~~~l~~yl~~~~~~~~~~~d~~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~--~~~~~-l~Q~rf~~ 484 (882)
|+..||++.|+++||.|+++|+|+|++++|||+++++++|.++++||++|++|+|+|+|+|+++ ++.+. +.|.+
T Consensus 389 L~~~lGee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~--- 465 (831)
T TIGR02412 389 LVAWVGEEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES--- 465 (831)
T ss_pred HHHHHCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec---
Confidence 9999999999999999999999999999999999999999999999999999999999999875 34444 22221
Q ss_pred CCCCCCCeeEEEEEEEECccccee-----eEEeeccceEEEecccccccccCCCCCCceEEeCcCceeEEEEEcCHHHHH
Q 002775 485 SGSPGDGQWIVPITLCCGSYDVCK-----NFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAA 559 (882)
Q Consensus 485 ~~~~~~~~w~iPl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~ 559 (882)
.+ ....|.|||.+....+.... .+++..... .++... ...+. +||++|.++.|||||+||+++|+
T Consensus 466 ~~--~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~--~~v~~N~~~~gyyrv~yd~~~~~ 535 (831)
T TIGR02412 466 SG--PPRPHRIAIGLYDLDRDDLRRTTLVPLTISGERT--AVPQLV----GKRAP--ALVLLNDDDLTYAKVRLDPTSFD 535 (831)
T ss_pred CC--CCCCeeEEEeeeecCCCcceeeeEEEEEEecCce--eehhhc----CCCCC--CEEEEeCCCcEEEEEECCHHHHH
Confidence 11 12469999998654332211 133333222 122110 01133 79999999999999999999999
Q ss_pred HHHHHHHccCCChhhHHHHHHHHHHHHHhccCCHHHHHHHH-HhccCCCcHHHHHHHHHHHH-HHHHHHhccChHHHHHH
Q 002775 560 RLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLM-ASYSEETEYTVLSNLITISY-KIGRIAADARPELLDYL 637 (882)
Q Consensus 560 ~l~~~L~~~~i~~~~ra~li~D~~~la~~g~l~~~~~l~l~-~~l~~E~~~~~w~~~~~~l~-~l~~~~~~~~~~~~~~~ 637 (882)
.|.++|.. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|++|.||..++..+. .+...+.. ++.+..+
T Consensus 536 ~l~~~l~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~--~~~~~~~ 612 (831)
T TIGR02412 536 TVLAALSK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAP--IADRPAL 612 (831)
T ss_pred HHHHHhhh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCC--HHHHHHH
Confidence 99999853 33799999999999999999999999999955 89999999999999999999 88887744 4578889
Q ss_pred HHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeee
Q 002775 638 KQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQ 717 (882)
Q Consensus 638 ~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~ 717 (882)
+.|+.+++.+.... ++++.+.+++. +..++|..|+++|++.++++|+.|+.+ ..||||+|..|||++..
T Consensus 613 ~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~dlr~~v~~~~~~ 681 (831)
T TIGR02412 613 LAVAALACRSLRRA-------MESGPDFQLRW-LRALALTATDPDSLRRLLSLLDGKIKG---LALDPDLRWRIIARLAA 681 (831)
T ss_pred HHHHHHHHHHHHhc-------cCCCccHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCCCC---cccCHhHHHHHHHHHHh
Confidence 99998888764422 23333334433 555799999999999999999998754 37999999999886443
Q ss_pred ecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC-cCCcccceeeee-eccc-cHHHHHHHH
Q 002775 718 KVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VSIE-GRETAWKWL 794 (882)
Q Consensus 718 ~v~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~-~i~~qd~~~~~~-v~~~-g~~~~~~fl 794 (882)
++..+|+.++++|++++++++|..+|.||||++||+++++.+..++.+ .++.||...++. ++.. +++++|+|+
T Consensus 682 ----~~~~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (831)
T TIGR02412 682 ----LGFIDADDIAAELERDNTASGEEHAAAARAARPDAAAKREAWQKLVTTDALPNSKQRAIIEGFWQPEQALLLAAYA 757 (831)
T ss_pred ----cCCCCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCCHHHHHHHHhhcCCCCcHHHHHHHH
Confidence 567889999999999999999999999999999999999766666655 589999988888 7655 999999999
Q ss_pred HHHHHHHHHHhCC-CcchHHHHHHhhc--cCCCHHHHHHHHHHhhc--CCCchHHHHHHHHHHHHHHHHHHHH
Q 002775 795 KDNWDHISKTWGS-GFLITRFISSIVS--PFASYEKVREVEEFFSS--RCKPYIARTLRQSIERVQINAKWVE 862 (882)
Q Consensus 795 ~~n~~~i~~~~~~-~~~l~~~i~~~~~--~~~t~~~l~~~~~Ff~~--~~~~~~~~~~~~~le~i~~ni~W~~ 862 (882)
++||+.|.++++. +..+.+.+...+. .+++++.++++++||++ +..++..|.+.++++.++.|+++++
T Consensus 758 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~d~~~r~~~~~~ 830 (831)
T TIGR02412 758 ERYFANLADIWKRRGPAIAQAISRGLFPATAVNYDTLATADKWLRSQADASPGLRRTLLERRDAAERALRARE 830 (831)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhHHHHHHHhhc
Confidence 9999999999975 4555655554444 89999999999999974 3345889999999999999998865
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-93 Score=856.85 Aligned_cols=817 Identities=30% Similarity=0.472 Sum_probs=657.5
Q ss_pred CCCCCCcee-ee--EEEEEEecCC--CCeEEEEEEEEEEE--ECCCCEEEEEecCceeeEEEEeeccCCCCccccceeEE
Q 002775 8 PRLPKFAVP-KR--YDIRLTPDLT--SCKFGGSVAIDVDV--VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVE 80 (882)
Q Consensus 8 ~rLp~~v~p-~~--Y~l~l~~d~~--~~~~~G~v~I~~~~--~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~ 80 (882)
..++..+.| .+ |++.|+++.. +.+|+|+++|++.. ..+...|+||+.+|+|.++.+++... .. .+.
T Consensus 11 ~~~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~------~~-~~~ 83 (859)
T COG0308 11 AALSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKAL------TA-WYR 83 (859)
T ss_pred ccccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccc------cc-ccc
Confidence 345555666 66 7777765554 58999999999987 33344499999999999999986311 11 233
Q ss_pred EecCCeEEEEEeCCc--c---CCceEEEEEEEEeeeC-CCCceeEEeeeccCCeeeeeeeccCCCCCCCceeeccCCCCC
Q 002775 81 LVEADEILVLEFAET--L---PTGMGVLAIGFEGVLN-DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPAC 154 (882)
Q Consensus 81 ~~~~~~~l~i~~~~~--l---~~g~~~l~i~y~g~~~-~~~~G~y~~~y~~~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ 154 (882)
++. +.+.|....+ . .++...+.+.+.+... +.+.|+|++.+.. ..+++||||+.+||+||||+|+|+.
T Consensus 84 ~~~--~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~D~P~~ 157 (859)
T COG0308 84 LDG--DALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCIDEPDV 157 (859)
T ss_pred ccC--ccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecCCCCCC
Confidence 333 3333433222 2 2346778888888776 7888999987643 6788999999999999999999999
Q ss_pred ceEEEEEEEeCCCCeEeecCCcccee-ecCCeEEEEEEcCCCccceEEEEEEecceeeecccc---CCeEEEEEEcCCch
Q 002775 155 KATFKITLDVPSELVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS---DGIKVRVYCQVGKA 230 (882)
Q Consensus 155 ka~f~l~i~~p~~~~a~sn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~---~g~~v~v~~~~~~~ 230 (882)
||+|+++|+.++++.++|||++.... ..+++++++|..++||||||+|+++|+|..++.... +++++++|++++..
T Consensus 158 katf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~ 237 (859)
T COG0308 158 KATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVL 237 (859)
T ss_pred cceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcch
Confidence 99999999999999999999998763 335689999999999999999999999988875542 47999999999889
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHH
Q 002775 231 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELA 310 (882)
Q Consensus 231 ~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEla 310 (882)
..++++++.+.++++|||++||+|||+++ ++|++|+|+.|||||||+++|++..+|.++..++....++++.+|+||+|
T Consensus 238 ~~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHEla 316 (859)
T COG0308 238 DRAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELA 316 (859)
T ss_pred hhhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 99999999999999999999999999999888888888999999999999
Q ss_pred HHHhcCccccccchhhhhhhhHHHHHHHHHHhhhCc-chhHHHHHHHHHHH-HHhhhcccCCccccccCccceecCCccc
Q 002775 311 HQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTE-GLRLDGLAESHPIEHIGSFQVEVNHTGE 388 (882)
Q Consensus 311 HqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~~~~~~pi~~~~~~~~~~~~~~~ 388 (882)
||||||+||++||+++|||||||+|+++...+.++| .|..++.+...... ++..|+...+||+. ..+.+|.+
T Consensus 317 HqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~------~~~~~~~e 390 (859)
T COG0308 317 HQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIR------VDVYDPKE 390 (859)
T ss_pred hhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcc------cCCCCccc
Confidence 999999999999999999999999999999999999 89988888776664 78889999999999 88889999
Q ss_pred cccccccccccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHhhhcCCCcceEEE
Q 002775 389 IDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISV 468 (882)
Q Consensus 389 ~~~~f~~i~Y~Kga~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~d~~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v 468 (882)
+++.||.++|.||++|+|||+.++|++.|+++|+.|+++|++++++++|||+++++++|+|+..+|+.|++|+|+|++.|
T Consensus 391 i~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v 470 (859)
T COG0308 391 INDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTV 470 (859)
T ss_pred hhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCc-EEEEEEEeeccCCCCCCCeeEEEEEEEECcccceeeEEeeccceEEEecccccccccCCCCCCceEEeCcCcee
Q 002775 469 KVKEE-KLELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTG 547 (882)
Q Consensus 469 ~~~~~-~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~g 547 (882)
...++ .++++|.||...+......|.||+.+.....+......+.+...++.+..... .+- .-+++|....+
T Consensus 471 ~~~~~~~~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~~-----~~~--~~~~~~~~~~~ 543 (859)
T COG0308 471 SVRYDDFFKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVGI-----PPF--PSLKVNDSAPV 543 (859)
T ss_pred eeeccccEEEEEEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEecccC-----Ccc--ceeeccCCccc
Confidence 99886 78999999998773334599999999887544223344555556666654211 111 36889999999
Q ss_pred EEEEEcCHHHHHHHHHHHHccCCChhhHHHHHHHHHHHHHhccCCHHHHHHHHHhccCCCcHHH-HHHHHH-HHHHHHHH
Q 002775 548 FYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTV-LSNLIT-ISYKIGRI 625 (882)
Q Consensus 548 yyRV~Yd~~~w~~l~~~L~~~~i~~~~ra~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~-w~~~~~-~l~~l~~~ 625 (882)
+|++.|+.+.|..++... ..+++.+|+.++.|..++..+|..+...++..+....++..... -..++. .+..+...
T Consensus 544 ~~~~~y~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 621 (859)
T COG0308 544 FYRVDYSDQSLSKLLQHD--PRLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSF 621 (859)
T ss_pred eEEEecCHHHHHHHHhhh--hhhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccc
Confidence 999999999998887763 37889999999999999999999999999887766554444443 333333 22222222
Q ss_pred HhccChHHHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCc
Q 002775 626 AADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPP 705 (882)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~ 705 (882)
.. .+ ..+.......+...+.++++....++.. .......+ +.++...+..+.+.+..+|..+-.. ...+++
T Consensus 622 ~~---~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 692 (859)
T COG0308 622 AD---LE--KFIDPDAIDQLRDALVRLGAEAVADDLL-ALYHIGAL-SQSLYEEDASLAALRALRNACLERL--EKQEDP 692 (859)
T ss_pred hh---hh--hhcCHHHHHHHHHHHHHHHHHhhcchHH-HHHHhhhh-ccccccccHHHHHHHHHHHHHHhhc--ccccCh
Confidence 11 11 3445566667777777777765433322 22222222 6777888899999999999887543 345889
Q ss_pred chhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC-cCCcccceeeee-ec
Q 002775 706 DIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VS 783 (882)
Q Consensus 706 dlr~~vy~~~~~~v~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~-~i~~qd~~~~~~-v~ 783 (882)
++|..+-..+..+ .+..+.+..+.+.|..+.....+..+..+.+....+..+.+.|..+..+ .+..|+...... ..
T Consensus 693 ~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 770 (859)
T COG0308 693 ELRSLVVKAYAAA--GNMTDALKALLEAYQSPTRAEALRDFADAFGRFPLVMDKWFALQAISPGDTVLEQDIGLMIHAAF 770 (859)
T ss_pred hHHHHHHHHHHHh--cChHHHHHHHHHhcccCChHHHHHHHHHHhcccccHHHHHHHHHhcCCCcchHHHHHHHHhhhhh
Confidence 9998765555432 3333468999999999888899999999999999999999999988876 578888877776 33
Q ss_pred -c-ccHHHHHHHHHHHHH---HHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 002775 784 -I-EGRETAWKWLKDNWD---HISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINA 858 (882)
Q Consensus 784 -~-~g~~~~~~fl~~n~~---~i~~~~~~~~~l~~~i~~~~~~~~t~~~l~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni 858 (882)
. +++++.|.|...||+ .+....+++......+......++....++++++|++....+...+.+.+++++|....
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~ 850 (859)
T COG0308 771 EAPNPNEARWLYGTFAFENPALLHALDGSGYRFLGVIVLELNIFNPQLALRKIEEFLELKKLKALERLIREALETIAARE 850 (859)
T ss_pred hCCcchhhHHHHHHHhhhchhhhhhhccccccccceEEEEeeccchhhHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence 2 399999999999998 55555565432222222335678888889999999987665578899999999999998
Q ss_pred HHHHHh
Q 002775 859 KWVESI 864 (882)
Q Consensus 859 ~W~~~~ 864 (882)
++.+..
T Consensus 851 ~l~~~~ 856 (859)
T COG0308 851 RLSKDL 856 (859)
T ss_pred hhhhhh
Confidence 887654
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=6.5e-84 Score=764.72 Aligned_cols=709 Identities=21% Similarity=0.267 Sum_probs=505.6
Q ss_pred CCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCceeeEEEEeeccCCCCccccceeEEEecCCeEEEE
Q 002775 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (882)
Q Consensus 11 p~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (882)
|..+...||+|+|+++++...++|+++|+++..++...|+||+.+|+|.+|.+++. .+. ...+..+++.++|
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~------~~~--~~~~~~~~~~L~I 75 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGK------PLA--AGDYQLDDETLTI 75 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCE------ecC--cceEEEcCCEEEE
Confidence 56688999999999999999999999999998777778999999999999998642 111 1235555678888
Q ss_pred EeCCccCCceEEEEEEEEee--eCCCCceeEEeeeccCCeeeeeeeccCCCCCCCceeeccCCCCCceEEEEEEEeCCC-
Q 002775 91 EFAETLPTGMGVLAIGFEGV--LNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE- 167 (882)
Q Consensus 91 ~~~~~l~~g~~~l~i~y~g~--~~~~~~G~y~~~y~~~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~~- 167 (882)
.+ + ++.++|+|.|.+. .+..+.|+|++.| +++|||||.+||++|||||+|++||+|+++|++|++
T Consensus 76 ~~---~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~ 143 (863)
T TIGR02414 76 AS---V-PESFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKK 143 (863)
T ss_pred ee---C-CccEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCc
Confidence 74 2 3578999999764 4456789999753 578999999999999999999999999999999996
Q ss_pred C-eEeecCCccce-eecCCeEEEEEEcCCCccceEEEEEEecceeeecc----ccCCeEEEEEEcCCchhhHHHHHHHHH
Q 002775 168 L-VALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNVAV 241 (882)
Q Consensus 168 ~-~a~sn~~~~~~-~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~~~ 241 (882)
| +++|||+++.. ...+++++++|+.++|||+||+||+||+|+.++.. ...++++++|++|+..+.++++++.++
T Consensus 144 y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~ 223 (863)
T TIGR02414 144 YPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLK 223 (863)
T ss_pred ceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHH
Confidence 7 56899987765 44577889999999999999999999999988742 224589999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCccccc
Q 002775 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTME 321 (882)
Q Consensus 242 ~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~ 321 (882)
++|++||++||.|||++|+++|++|+|..||||||||++|++..+|.++...+...++.+..+||||+|||||||+||++
T Consensus 224 ~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~ 303 (863)
T TIGR02414 224 KAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCR 303 (863)
T ss_pred HHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeec
Confidence 99999999999999999999999999999999999999999999999998777777888999999999999999999999
Q ss_pred cchhhhhhhhHHHHHHHHHHhhhCcchh--HHHHHHHHHHHHHhhhcccCCccccccCccceecCCcccccccccccccc
Q 002775 322 WWTHLWLNEGFATWVSYLAADSLFPEWK--IWTQFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYR 399 (882)
Q Consensus 322 ~w~d~WL~EGfa~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~~~~~~~f~~i~Y~ 399 (882)
||+++|||||||+|++..+.....+... +....... ...+..|+...+||+. . .+..++++.|+.++|.
T Consensus 304 ~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr-~~~f~~D~~p~~~Pi~------~--~~~~~i~~~y~~i~Y~ 374 (863)
T TIGR02414 304 DWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLR-AHQFPEDAGPMAHPVR------P--ESYVEINNFYTATVYE 374 (863)
T ss_pred chhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhcccccccCCCCC------C--cchhhHHhccchHHhH
Confidence 9999999999999999766555443311 11111000 1235557777888886 2 3445677889999999
Q ss_pred chhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHhhhcCCCcceEEEEEeC----c--
Q 002775 400 KGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E-- 473 (882)
Q Consensus 400 Kga~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~d~~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~----~-- 473 (882)
||++|+|||+..||++.|+++|+.|+++|++++++++|||+++++++|.|+.+|+ +|++|+|+|+|+|++++ +
T Consensus 375 KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~ 453 (863)
T TIGR02414 375 KGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTY 453 (863)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEE
Confidence 9999999999999999999999999999999999999999999999999999985 89999999999999863 2
Q ss_pred EEEEEEEeeccCCCCCCCeeEEEEEEEEC--cccc-----------eeeEEeeccceEEEecccccccccCCCCCCceEE
Q 002775 474 KLELEQSQFLSSGSPGDGQWIVPITLCCG--SYDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIK 540 (882)
Q Consensus 474 ~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~ 540 (882)
+++++|.+....+......|.|||.+..- ++.. ...+.++.+++++.++.+.. . ..+-
T Consensus 454 ~lt~~Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~~------~---p~~s 524 (863)
T TIGR02414 454 TLTVRQSTPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIAE------K---PVPS 524 (863)
T ss_pred EEEEEEeCCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCCC------C---Ceee
Confidence 46666664432233334589999999652 2211 12356778888999886421 1 3477
Q ss_pred eCcCceeEEEEEcCH--HHHHHHHHHHHccCCChhhHHHHHHHHHHH-----HHhcc-CC-HHHHHHHHHhccCCC--cH
Q 002775 541 LNVNQTGFYRVKYDK--DLAARLGYAIEMKQLSETDRFGILDDHFAL-----CMARQ-QT-LTSLLTLMASYSEET--EY 609 (882)
Q Consensus 541 ~N~~~~gyyRV~Yd~--~~w~~l~~~L~~~~i~~~~ra~li~D~~~l-----a~~g~-l~-~~~~l~l~~~l~~E~--~~ 609 (882)
++.+.+.+-++.|+. +.+..|...= .+.+..-+-+|-+..-.-+ ...|. +. -..+++.++.+-.+. +.
T Consensus 525 l~r~fsapv~l~~~~~~~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 603 (863)
T TIGR02414 525 LLRGFSAPVNLEYPYSDEDLLLLLAHD-SDPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALGKLLNDPHLDA 603 (863)
T ss_pred ecCCCCceEEEeCCCCHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCH
Confidence 788888888887764 3333332210 1122211112211111111 11222 21 234555555533222 33
Q ss_pred HHHHHHHHH--HHHHHHHHhccChH--------HHHHHHHHHHHHHHHHHHhcCCcc---CCCCCHHHHHHHHHHHHHHH
Q 002775 610 TVLSNLITI--SYKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALA 676 (882)
Q Consensus 610 ~~w~~~~~~--l~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac 676 (882)
..-..++.. ...|...+..-+|+ ....+..-++..+..+|+++--.. ...+....+.||..+|++++
T Consensus 604 ~~~a~~l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~ 683 (863)
T TIGR02414 604 AFKALLLALPSEAYLAELMENIDPDALHAAREFLRAAIARQLADDLLRLYDALQENGPYSVDPAAAGRRALRNACLSYLS 683 (863)
T ss_pred HHHHHHhcCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 332222221 11222222111121 223344444455566666653211 11223446899999999999
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCH
Q 002775 677 LLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDV 756 (882)
Q Consensus 677 ~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~v~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~ 756 (882)
..+.++..+.|.+.|++-- + ---|-+.+.+++..-....++..+..++++++....-+|--.+.|.+ ..+
T Consensus 684 ~~~~~~~~~~~~~~~~~a~---~-----mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~--~~~ 753 (863)
T TIGR02414 684 AADDAEIRNLALEQFKSAD---N-----MTDRLAALSALVHFESDFRERALAAFYQKWKDDPLVMDKWFALQATS--PRP 753 (863)
T ss_pred hCCChhHHHHHHHHHHhCC---C-----HHHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCchhHHHHHHHHhCC--Ccc
Confidence 9999999999999887531 1 11222222332211001112235556666666666666776676644 344
Q ss_pred HHHHHHHHHhccC
Q 002775 757 NIVLEVLNFLLSS 769 (882)
Q Consensus 757 ~ll~~~L~~~l~~ 769 (882)
+.+.++-.+.-.+
T Consensus 754 ~~~~~v~~l~~h~ 766 (863)
T TIGR02414 754 DTLERVKALLQHP 766 (863)
T ss_pred cHHHHHHHHhcCC
Confidence 5666655554443
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=4.5e-83 Score=760.14 Aligned_cols=710 Identities=22% Similarity=0.286 Sum_probs=501.2
Q ss_pred CCCceeeeEEEEEEecCCCCeEEEEEEEEEEE-ECCCCEEEEEecCceeeEEEEeeccCCCCccccceeEEEecCCeEEE
Q 002775 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILV 89 (882)
Q Consensus 11 p~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (882)
|..+...||+|+|+++++...++|+++|+... .++.+.|+||+.+|+|.+|.+++. .+.+. .+..+++.|+
T Consensus 16 ~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~------~~~~~--~~~~~~~~L~ 87 (875)
T PRK14015 16 PPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQ------PLAPS--AYELDEEGLT 87 (875)
T ss_pred CCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCE------EcCcc--ceEEcCCEEE
Confidence 55688899999999999999999999999876 456789999999999999998652 11111 3445567888
Q ss_pred EEeCCccCCceEEEEEEEEeeeC--CCCceeEEeeeccCCeeeeeeeccCCCCCCCceeeccCCCCCceEEEEEEEeCCC
Q 002775 90 LEFAETLPTGMGVLAIGFEGVLN--DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE 167 (882)
Q Consensus 90 i~~~~~l~~g~~~l~i~y~g~~~--~~~~G~y~~~y~~~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~~ 167 (882)
|.. + ++.++|+|.|++... ..+.|+|++.+ +++|||||.+||+||||+|+|++||+|+++|++|++
T Consensus 88 I~~---l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~ 155 (875)
T PRK14015 88 IEN---L-PDRFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKA 155 (875)
T ss_pred Eec---C-CccEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccc
Confidence 872 3 336899999987653 45789998642 578999999999999999999999999999999994
Q ss_pred -C-eEeecCCcccee-ecCCeEEEEEEcCCCccceEEEEEEecceeeecc--c--cCCeEEEEEEcCCchhhHHHHHHHH
Q 002775 168 -L-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH--T--SDGIKVRVYCQVGKANQGKFALNVA 240 (882)
Q Consensus 168 -~-~a~sn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~--~--~~g~~v~v~~~~~~~~~~~~~l~~~ 240 (882)
| +++|||++++.. ..+++++++|+.++|||+||+||++|+|+.++.. + ..++++++|++|+..+.++++++.+
T Consensus 156 ~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~ 235 (875)
T PRK14015 156 KYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSL 235 (875)
T ss_pred cCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHH
Confidence 8 689999988774 4677899999999999999999999999988742 2 2359999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCcccc
Q 002775 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 320 (882)
Q Consensus 241 ~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~ 320 (882)
+++|++||++||.|||++|+++|++|+|..||||||||++|++..++.++...+...+..+..+||||+|||||||+||+
T Consensus 236 ~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~ 315 (875)
T PRK14015 236 KKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTC 315 (875)
T ss_pred HHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999999988766667777899999999999999999999
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhhCc-chhHHHHHHHHHHHHHhhhcccCCccccccCccceecCCcccccccccccccc
Q 002775 321 EWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYR 399 (882)
Q Consensus 321 ~~w~d~WL~EGfa~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~~~~~~~f~~i~Y~ 399 (882)
+||+|+|||||||+|++..+.....+ .+.............+..|+...+||+. . .++.+++..|+.++|.
T Consensus 316 ~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~------p--~~~~~i~~~f~~~~Y~ 387 (875)
T PRK14015 316 RDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVR------P--DSYIEINNFYTATVYE 387 (875)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCC------C--cchhhHHhcccchhhh
Confidence 99999999999999998776555432 1111111000001224456666677775 2 2345677889999999
Q ss_pred chhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHhhhcCCCcceEEEEEeC----c--
Q 002775 400 KGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E-- 473 (882)
Q Consensus 400 Kga~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~d~~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~----~-- 473 (882)
||++|||||+..||++.|+++|+.|+++|++++++++|||+++++++|.|+.+|+ +|++|+|+|+|+|+++. +
T Consensus 388 KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~ 466 (875)
T PRK14015 388 KGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTY 466 (875)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEE
Confidence 9999999999999999999999999999999999999999999999999999986 89999999999999863 3
Q ss_pred EEEEEEEeeccCCCCCCCeeEEEEEEEECc--ccc----------eeeEEeeccceEEEecccccccccCCCCCCceEEe
Q 002775 474 KLELEQSQFLSSGSPGDGQWIVPITLCCGS--YDV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKL 541 (882)
Q Consensus 474 ~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~ 541 (882)
+++++|.+....+......|.|||.+..-+ +.. ...+.++.+++++.++.+.. . ..+.+
T Consensus 467 ~ltl~Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~~------~---p~~s~ 537 (875)
T PRK14015 467 TLTLSQSTPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVAE------R---PVPSL 537 (875)
T ss_pred EEEEEEeCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCCC------C---ceEEe
Confidence 466677644333333445899999996422 221 22366788888999985421 2 34778
Q ss_pred CcCceeEEEEEcCH--HHHHHHHHHHHccCCChhhHHHHHHHHHHHH--Hh-cc-CC-HHHHHHHHHhcc-C-CCcHHHH
Q 002775 542 NVNQTGFYRVKYDK--DLAARLGYAIEMKQLSETDRFGILDDHFALC--MA-RQ-QT-LTSLLTLMASYS-E-ETEYTVL 612 (882)
Q Consensus 542 N~~~~gyyRV~Yd~--~~w~~l~~~L~~~~i~~~~ra~li~D~~~la--~~-g~-l~-~~~~l~l~~~l~-~-E~~~~~w 612 (882)
+.+.+.+-++.|+. +.+..|...= .+.+..-+-+|-+..-.-+. .. |. +. -..+++.++.+- + +.+...-
T Consensus 538 ~r~fsapv~~~~~~~~~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 616 (875)
T PRK14015 538 LRGFSAPVKLEYDYSDEDLLFLMAHD-SDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDESLDPAFA 616 (875)
T ss_pred cCCCCCcEEEeCCCCHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 88888888888764 3333332210 12222222222221111111 11 22 21 234555555432 2 2333333
Q ss_pred HHHHHHH--HHHHHHHhccChH--------HHHHHHHHHHHHHHHHHHhcCCcc---CCCCCHHHHHHHHHHHHHHHhcC
Q 002775 613 SNLITIS--YKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLG 679 (882)
Q Consensus 613 ~~~~~~l--~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~g 679 (882)
..++..- ..|...+..-+++ ....+..-++..+..+|+++--.. ...+....+.||..+|.+++..+
T Consensus 617 a~~l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~ 696 (875)
T PRK14015 617 AELLTLPSEAELAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAAD 696 (875)
T ss_pred HHHccCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3333221 1222221111111 222333334444555666652211 01233456899999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHH
Q 002775 680 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIV 759 (882)
Q Consensus 680 ~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~v~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll 759 (882)
.++..+.|.+.|+.-- +- -.|-+.+.++...-....++.-+..++++++....-+|--.+.|.+-.. +.+
T Consensus 697 ~~~~~~~~~~~~~~a~---~m-----td~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~--~~~ 766 (875)
T PRK14015 697 DEEAAELAEAQFDQAD---NM-----TDRLAALSALVNADLPERDEALADFYDRWKDDPLVMDKWFALQATSPAP--DTL 766 (875)
T ss_pred ChhHHHHHHHHHhhCC---CH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCc--CHH
Confidence 9988888888887431 11 1222222222221001112235555666666666667777777765444 455
Q ss_pred HHHHHHhccC
Q 002775 760 LEVLNFLLSS 769 (882)
Q Consensus 760 ~~~L~~~l~~ 769 (882)
.++-.+.-++
T Consensus 767 ~~v~~l~~hp 776 (875)
T PRK14015 767 ERVRALMQHP 776 (875)
T ss_pred HHHHHHhcCC
Confidence 5554444333
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=9.1e-77 Score=687.27 Aligned_cols=426 Identities=24% Similarity=0.392 Sum_probs=350.0
Q ss_pred CCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECC-CCEEEEEecCceeeEEEEeeccCCCCccccceeEEE----ecC
Q 002775 10 LPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGD-TKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL----VEA 84 (882)
Q Consensus 10 Lp~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~-~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~----~~~ 84 (882)
=|..++|.||+|+|++|+++.+|+|+|+|++++.++ ++.|+||+.+|+|.+|.+++. +..+.. +..
T Consensus 7 n~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~---------~~~~~~~~~~~~~ 77 (601)
T TIGR02411 7 NYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGL---------PADFAIGERKEPL 77 (601)
T ss_pred CCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCc---------ccceEeccccCCC
Confidence 377899999999999999999999999999999765 588999999999999988642 112222 235
Q ss_pred CeEEEEEeCCccCCc-eEEEEEEEEeeeCCCCceeEEeeec-cCCeeeeeeeccCCCCCCCceeeccCCCCCceEEEEEE
Q 002775 85 DEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYE-LNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITL 162 (882)
Q Consensus 85 ~~~l~i~~~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~-~~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l~i 162 (882)
++.|.|.+++++.+| .++|+|.|+|..+ ..|++...+. .+|..++++.|||||++||+||||||+|++||+|+++|
T Consensus 78 g~~L~I~l~~~l~~g~~~~l~I~Y~~~~~--~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I 155 (601)
T TIGR02411 78 GSPLTISLPIATSKNKELVLNISFSTTPK--CTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEV 155 (601)
T ss_pred CCeEEEEeCCccCCCceEEEEEEEeecCC--CceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEEE
Confidence 678999999999999 8999999999753 4577654432 35777788899999999999999999999999999999
Q ss_pred EeCCCCeEeecCCccceeecCCeEEEEEEcCCCccceEEEEEEecceeeeccccCCeEEEEEEcCCchhhHHHHHH-HHH
Q 002775 163 DVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VAV 241 (882)
Q Consensus 163 ~~p~~~~a~sn~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~~ 241 (882)
++| +.|++||....... ++..+++|+.++|||+||+||+||+|+..+ .|.++++|++|+..+.+++++. .+.
T Consensus 156 ~~P--~~av~sg~~~~~~~-~~~~~~~F~~t~pmptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~~ 228 (601)
T TIGR02411 156 ESP--LPVLMSGIPDGETS-NDPGKYLFKQKVPIPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHDTE 228 (601)
T ss_pred eeC--cceeccCCcccccc-CCCceEEEEeCCCcchhhheeeeccceecc----cCCceEEEccchhHHHHHHHHHHhHH
Confidence 999 88887765544332 345578999999999999999999998754 3678999999998888888888 999
Q ss_pred HHHHHHHHHhCCCCCCCCcceeec-CCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCcccc
Q 002775 242 KTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 320 (882)
Q Consensus 242 ~~l~~~e~~~g~~yP~~k~d~v~~-p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~ 320 (882)
++|+++|+++| |||++|+|+|++ |+|++||||||| ++|.+..++.+.. ....+||||||||||||+||+
T Consensus 229 ~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d~--------s~~~viaHElAHqWfGNlVT~ 298 (601)
T TIGR02411 229 NFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGDR--------SNVDVIAHELAHSWSGNLVTN 298 (601)
T ss_pred HHHHHHHHhCC-CCcCccceEEEecCccccccccccc-ceeeccccccCCh--------hhhhhHHHHHHhhccCceeec
Confidence 99999999877 999999999987 799999999999 5677776776432 235799999999999999999
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhhCcchhHH-HHHHH-HHH-HHHhhhcccCCccccccCccceecCCc--ccccccccc
Q 002775 321 EWWTHLWLNEGFATWVSYLAADSLFPEWKIW-TQFLD-ECT-EGLRLDGLAESHPIEHIGSFQVEVNHT--GEIDEIFDA 395 (882)
Q Consensus 321 ~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~--~~~~~~f~~ 395 (882)
+||+|+|||||||+|++.+++++++|++... ..+.. ..+ ..+ +.+...+|+. ..+.+. .+++..|+.
T Consensus 299 ~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~~~~~~------~~~~~~~~~dp~~~f~~ 370 (601)
T TIGR02411 299 CSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGEDPEYT------KLVVDLKDNDPDDAFSS 370 (601)
T ss_pred CCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcCCCCCC------cccccCCCCChhhhccc
Confidence 9999999999999999999999999986431 11111 111 112 2233444554 222222 256788999
Q ss_pred ccccchhHHHHHHHHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhcc-----CCCHHHH-HHhhhcCCCcceEEE
Q 002775 396 ISYRKGASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----GEPVNKL-MNSWTKQKGYPVISV 468 (882)
Q Consensus 396 i~Y~Kga~vl~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~d~~~~l~~~s-----g~~l~~~-~~~W~~~~G~P~l~v 468 (882)
++|.||+++|+||+..|| ++.|+++||.|+++|+|++++++|||+++.+.. +.+++.+ |+.|++++|+|.+++
T Consensus 371 i~Y~KGa~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~ 450 (601)
T TIGR02411 371 VPYEKGFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKP 450 (601)
T ss_pred cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCC
Confidence 999999999999999999 999999999999999999999999999998763 2456666 899999999999876
Q ss_pred EEe
Q 002775 469 KVK 471 (882)
Q Consensus 469 ~~~ 471 (882)
..+
T Consensus 451 ~~~ 453 (601)
T TIGR02411 451 NFD 453 (601)
T ss_pred CCC
Confidence 644
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=2.1e-74 Score=650.79 Aligned_cols=385 Identities=46% Similarity=0.823 Sum_probs=343.6
Q ss_pred CCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCceeeEEEEeeccCCCCccccceeEEEecCCeEE
Q 002775 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEIL 88 (882)
Q Consensus 9 rLp~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (882)
|||++++|.||+|.|++|+++.+|+|+++|++++.++++.|+||+.+|+|.++.+.+..... ......+.++..++.+
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~--~~~~~~~~~~~~~~~l 78 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSS--EYKSSPFEYDDENEKL 78 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSC--TECCEEEEEECCBTEE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccc--cccccceeecccccee
Confidence 89999999999999999999999999999999999999999999999999999997542211 1122337788888999
Q ss_pred EEEeCCccCCc-eEEEEEEEEeeeCCCCceeEEeeecc--CCeeeeeeeccCCCCCCCceeeccCCCCCceEEEEEEEeC
Q 002775 89 VLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL--NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVP 165 (882)
Q Consensus 89 ~i~~~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~--~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p 165 (882)
.|.+++++.+| .|+|+|.|+|.++++..|+|++.|.+ ++...++++||+||.+||+||||||+|.+||+|+++|++|
T Consensus 79 ~I~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p 158 (390)
T PF01433_consen 79 TITLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHP 158 (390)
T ss_dssp EEEEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEE
T ss_pred ehhhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeecc
Confidence 99999999999 79999999999999999999999976 6888999999999999999999999999999999999999
Q ss_pred CCCeEeecCCcccee-ecCCeEEEEEEcCCCccceEEEEEEecceeeeccccCCeEEEEEEcCCchhhHHHHHHHHHHHH
Q 002775 166 SELVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTL 244 (882)
Q Consensus 166 ~~~~a~sn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~~~~l 244 (882)
++++|+|||++.+.. .++++++++|..++|||+|++||+||+|..++..+.+|+++++|++|+..+..+++++.+.+++
T Consensus 159 ~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 238 (390)
T PF01433_consen 159 KDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKAL 238 (390)
T ss_dssp TTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHH
T ss_pred ccceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHH
Confidence 999999999998874 4568999999999999999999999999998866666799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCcceeecCCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCccccccch
Q 002775 245 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (882)
Q Consensus 245 ~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (882)
++|+++||+|||++|+|+|++|+|..|||||||+|+|++..++++++.++...+..+..+||||+|||||||+||++||+
T Consensus 239 ~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~ 318 (390)
T PF01433_consen 239 EYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWS 318 (390)
T ss_dssp HHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGG
T ss_pred HHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccch
Confidence 99999999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHHH-HHHhhhcccCCccccccCccceecCCccccccccccccccch
Q 002775 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKG 401 (882)
Q Consensus 325 d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~~~~~~~f~~i~Y~Kg 401 (882)
|+||+||||+|++++++++.+|++.++..+..+.+ .++..|....++|+. .++.++.++...|+.++|.||
T Consensus 319 d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~------~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 319 DLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLS------SEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSS------SSSSSESCGGGGSSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceE------eCCCCCCChHHhcCccccCCC
Confidence 99999999999999999999999998888877766 779999999999998 888999999999999999998
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-55 Score=465.10 Aligned_cols=433 Identities=25% Similarity=0.391 Sum_probs=341.5
Q ss_pred CCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCceeeEEEEeeccCCCCccccce-eEEEecCCeEEE
Q 002775 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPT-KVELVEADEILV 89 (882)
Q Consensus 11 p~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 89 (882)
+..+...|++|++++|++...++|++.+++++..+...|+|+.++|.|.+|++++.+. +..+. .-.+...+..+.
T Consensus 13 ~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~----~~~i~~~~~~~g~~~~~~ 88 (613)
T KOG1047|consen 13 YRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEP----PFRIGFRQPFLGSGQKLV 88 (613)
T ss_pred hhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCC----CCccCcccCCCCCceEEE
Confidence 4567789999999999999999999999999887766799999999999999976421 11111 112233334455
Q ss_pred EEeCCccCCc-eEEEEEEEEeeeCCCCceeEEeee-ccCCeeeeeeeccCCCCCCCceeeccCCCCCceEEEEEEEeCCC
Q 002775 90 LEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE 167 (882)
Q Consensus 90 i~~~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y-~~~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~~ 167 (882)
+..+.+ +.| ...|.|.|+... +..++-.-.. ...|+++.|+.||+|..+||..|||+|.|+.|.||+..|.+|.+
T Consensus 89 l~~~~~-~a~~~~~l~i~y~Ts~--~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~ 165 (613)
T KOG1047|consen 89 LPAPSS-KAGERLQLLIWYETSP--SATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMG 165 (613)
T ss_pred eccccc-cccCceEEEEEEeccC--CcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCc
Confidence 555443 355 899999998753 3345543333 23578889999999999999999999999999999999999999
Q ss_pred CeEeecCCcccee-ecCCeEEEEEEcCCCccceEEEEEEecceeeeccccCCeEEEEEEcCCchhhHHHHHH-HHHHHHH
Q 002775 168 LVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VAVKTLE 245 (882)
Q Consensus 168 ~~a~sn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~~~~l~ 245 (882)
+.+++++-..++. -..++..++|+...|+|+||+||++|+....+ -|.+-+||+.|...+.+++-+. .+.++|.
T Consensus 166 l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e----IgpRs~VwaEp~~~~a~~~ef~~~~e~~L~ 241 (613)
T KOG1047|consen 166 LTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE----IGPRSRVWAEPCLLDACQEEFAGETEDFLK 241 (613)
T ss_pred ceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc----cCCccceecchhhhHHHHHHHHhhhHHHHH
Confidence 9999988765543 33457889999999999999999999987655 3677899999999888888877 8999999
Q ss_pred HHHHHhCCCCCCCCcceeec-CCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCccccccch
Q 002775 246 LYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (882)
Q Consensus 246 ~~e~~~g~~yP~~k~d~v~~-p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (882)
.-|+.+| ||++.++|++++ |+|++||||||-|.+...+ ||-... ....+|||||||.||||+||...|.
T Consensus 242 ~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr--------sl~~vIaHEIAHSWtGNlVTN~sWe 311 (613)
T KOG1047|consen 242 AAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR--------SLVDVIAHEIAHSWTGNLVTNASWE 311 (613)
T ss_pred HHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc--------chhhHHHHHhhhhhcccccccCccc
Confidence 9999999 999999999998 5999999999977776666 555443 3678999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHHH-HHHhhhcccCCccccccCccceecCCccccccccccccccchhH
Q 002775 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGAS 403 (882)
Q Consensus 325 d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~~~~~~~f~~i~Y~Kga~ 403 (882)
+.||||||++|+|..++..++|+....-....... ..-..|.+...++.. .+.+...+ -+.+..|..+.|.||..
T Consensus 312 hfWLNEGfTvylErrI~g~~~g~~~~~f~a~~gw~~L~~~~d~~g~~~~~t---kLv~kl~~-~dPDdafs~VpYeKG~~ 387 (613)
T KOG1047|consen 312 HFWLNEGFTVYLERRIVGRLYGEAYRQFEALIGWRELRPSMDLFGETSEFT---KLVVKLEN-VDPDDAFSQVPYEKGFA 387 (613)
T ss_pred hhhhcccchhhhhhhhhhhhcchhHHHHHHhcChhhhhhHHHhcCCCcccc---hhhhhccC-CChHHhhhcCchhhhhH
Confidence 99999999999999999999987332111111111 111235555555554 11133332 34467899999999999
Q ss_pred HHHHHHHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC----CH--HHHHHhhhcCCCcceEEE
Q 002775 404 VIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PV--NKLMNSWTKQKGYPVISV 468 (882)
Q Consensus 404 vl~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~d~~~~l~~~sg~----~l--~~~~~~W~~~~G~P~l~v 468 (882)
+++.|++.+| ++.|...||.|+++|+|+.+.++||.+.+-+.... ++ +--++.|++.+|.|-..-
T Consensus 388 ll~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p 459 (613)
T KOG1047|consen 388 LLFYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKP 459 (613)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCC
Confidence 9999999999 77899999999999999999999999999876432 22 234799999999997543
No 9
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=2.6e-51 Score=450.94 Aligned_cols=313 Identities=37% Similarity=0.637 Sum_probs=269.9
Q ss_pred eEEeCcCceeEEEEEcCHHHHHHHHHHHHccCCChhhHHHHHHHHHHHHHhccCCHHHHHHHHHhc-cCCCcHHHHHHHH
Q 002775 538 WIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY-SEETEYTVLSNLI 616 (882)
Q Consensus 538 wi~~N~~~~gyyRV~Yd~~~w~~l~~~L~~~~i~~~~ra~li~D~~~la~~g~l~~~~~l~l~~~l-~~E~~~~~w~~~~ 616 (882)
||++|.+++|||||+||+++|+.|+++|..+.|++.+|++|++|+|+++++|+++++.+|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 999999999999999999999999999987679999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 002775 617 TISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA 696 (882)
Q Consensus 617 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~ 696 (882)
..|..+.+.+...++.....|++|+++++.++++++||+..+++++....+|..|+.+|| |+++|+++|.++|++|+.
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhc
Confidence 999999977763334444559999999999999999999888899999999999999999 999999999999999998
Q ss_pred CCCC--CCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCc-CCc
Q 002775 697 DRTT--PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRS 773 (882)
Q Consensus 697 ~~~~--~~i~~dlr~~vy~~~~~~v~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~~-i~~ 773 (882)
++.. ..||||+|.+|||++ +++|+.++|++++++|+++++++||..+|.||||++||++++++|+++++++ ++.
T Consensus 159 ~~~~~~~~i~~dlr~~v~~~~---~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~ 235 (324)
T PF11838_consen 159 GNDSPESSIPPDLRWAVYCAG---VRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS 235 (324)
T ss_dssp TTT-TTSTS-HHHHHHHHHHH---TTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T
T ss_pred CCcccccccchHHHHHHHHHH---HHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc
Confidence 7433 389999999877664 5689999999999999999999999999999999999999999999999985 999
Q ss_pred ccceeeee-ec-cc--cHHHHHHHHHHHHHHHHHHhCCC-cchHHHHHHhhccCCCHHHHHHHHHHhhc--CCCchHHHH
Q 002775 774 QDAVYGLA-VS-IE--GRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS--RCKPYIART 846 (882)
Q Consensus 774 qd~~~~~~-v~-~~--g~~~~~~fl~~n~~~i~~~~~~~-~~l~~~i~~~~~~~~t~~~l~~~~~Ff~~--~~~~~~~~~ 846 (882)
||+..++. ++ .+ |++++|+|+++||+.|.+++++. +.+..++..+++.++|+++++++++||++ ++.++..++
T Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~ 315 (324)
T PF11838_consen 236 QDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRA 315 (324)
T ss_dssp TTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHH
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHH
Confidence 99988888 76 55 99999999999999999999865 47899999999999999999999999954 445688899
Q ss_pred HHHHHHHHH
Q 002775 847 LRQSIERVQ 855 (882)
Q Consensus 847 ~~~~le~i~ 855 (882)
++|++|+||
T Consensus 316 l~q~~e~Ir 324 (324)
T PF11838_consen 316 LAQSLETIR 324 (324)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999986
No 10
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=8.3e-35 Score=331.40 Aligned_cols=433 Identities=19% Similarity=0.274 Sum_probs=319.5
Q ss_pred eeeEEEEEE-ecCCCCeEEEEEEEEEEEE-CCCCEEEEEecCceeeEEEEeeccCCC--------------Cc-ccc---
Q 002775 16 PKRYDIRLT-PDLTSCKFGGSVAIDVDVV-GDTKFIVLNAADLTINNRSVSFTNKVS--------------SK-ALE--- 75 (882)
Q Consensus 16 p~~Y~l~l~-~d~~~~~~~G~v~I~~~~~-~~~~~i~L~~~~l~i~~v~~~~~~~~~--------------~~-~~~--- 75 (882)
-.|..+.|. +|+.+..+.|.++|++... .....|+||++++.|.+|.|++..+.. .. ...
T Consensus 27 ~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred ceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 579999998 9999999999999999974 458999999999999999998752210 00 000
Q ss_pred ------ceeEEEecCCeEEEEEeCCccCC-c----eEEEEEEEEeeeCCCCceeEEeeeccCCeeeeeeeccCC-CCCCC
Q 002775 76 ------PTKVELVEADEILVLEFAETLPT-G----MGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFE-PADAR 143 (882)
Q Consensus 76 ------~~~~~~~~~~~~l~i~~~~~l~~-g----~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~T~~e-p~~Ar 143 (882)
..-...+..++.|.|.+++++.. | ..+++|.|+..=+..+--|++..|..+.....+.++..+ +.+||
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar 186 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSAR 186 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccc
Confidence 11122345568899999988542 2 456779998755544445777766333223344455554 55799
Q ss_pred ceeeccCCCCCceEEEEEEEeCCCCeEeecCCccce--eecCCeEEEEEEcCCCccceEEEEEEecceeeeccccCCeEE
Q 002775 144 RCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE--KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKV 221 (882)
Q Consensus 144 ~~fPc~DeP~~ka~f~l~i~~p~~~~a~sn~~~~~~--~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v 221 (882)
.||||.|.+..+++|++.+++|+..+++|+|.+... ..+-..++++|.-+.|+.+..++|+||+|+.... ..+++|
T Consensus 187 ~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~--P~~~~i 264 (1180)
T KOG1932|consen 187 SWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVE--PSMIDI 264 (1180)
T ss_pred eEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccCC--CccCcc
Confidence 999999999999999999999999999999998876 2334578999999999999999999999998732 347899
Q ss_pred EEEEcCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccceeeecccccccCCCCcHHHHHHH
Q 002775 222 RVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRV 301 (882)
Q Consensus 222 ~v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~ 301 (882)
..|+.|+.....+..--...++++|||+++|..|||+.+.+|++|.-..--|....|.+++.+ +||+.+. .+.....
T Consensus 265 ~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~i--IDq~~~t 341 (1180)
T KOG1932|consen 265 THFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNI--IDQTFLT 341 (1180)
T ss_pred eeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhh--hhHHHHH
Confidence 999999998888888889999999999999988999999999999877667777788888877 8888763 3344456
Q ss_pred HHHHHHHHHHHHhcCccccccchhhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHHHHHHhhhcc----cCCccccccC
Q 002775 302 ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGL----AESHPIEHIG 377 (882)
Q Consensus 302 ~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~pi~~~~ 377 (882)
...+|--||.||||-++|+..|+|.||-+|+|.|+..+++++++|...+.-+.-.+.-....+|-. ..+.|+.+..
T Consensus 342 r~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~ 421 (1180)
T KOG1932|consen 342 RRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSM 421 (1180)
T ss_pred HHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcch
Confidence 778999999999999999999999999999999999999999999866533322222233444432 1223444222
Q ss_pred cc--------ceecCCccccccccccccccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCC
Q 002775 378 SF--------QVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEP 449 (882)
Q Consensus 378 ~~--------~~~~~~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~d~~~~l~~~sg~~ 449 (882)
.. .............|..-.-.|+..+.+|+++.+|.+-|.+..+..+.. ++...
T Consensus 422 k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~-----------------~~~~~ 484 (1180)
T KOG1932|consen 422 KFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLEL-----------------ASKML 484 (1180)
T ss_pred hhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh-----------------hhhhH
Confidence 10 000111111122222222358888889999999988877666655542 22223
Q ss_pred HHHHHHhhhcCCCcceEEEEE
Q 002775 450 VNKLMNSWTKQKGYPVISVKV 470 (882)
Q Consensus 450 l~~~~~~W~~~~G~P~l~v~~ 470 (882)
++.|++.|++..|+|++.+..
T Consensus 485 ~k~~~~~Wv~~~g~~~~r~~~ 505 (1180)
T KOG1932|consen 485 LKSFFQTWVYGLGVPILRLGQ 505 (1180)
T ss_pred HHHHHHHHHhccCCeeEEEEE
Confidence 577888888888888888764
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.31 E-value=1.2e-10 Score=126.00 Aligned_cols=255 Identities=14% Similarity=0.159 Sum_probs=160.9
Q ss_pred CeEEEEEEcCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeec-CCCCCcccccccceeeecccccccCCCCcHH
Q 002775 218 GIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAA 296 (882)
Q Consensus 218 g~~v~v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~-p~~~~gamE~~gli~~~e~~ll~~~~~~~~~ 296 (882)
+..+.++..-. ..+.+...+.++++++.-.+.|| +-|+.++.+++. .+-.+||||+-.-.........+. +..
T Consensus 169 ph~~~~~g~~p-~~d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~~----~~~ 242 (558)
T COG3975 169 PHTIALRGELP-NFDKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGFT----DQD 242 (558)
T ss_pred ceeEEEeeccc-cccHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceecccccccccccccc----chh
Confidence 34444444321 24566777888999999999999 789999888765 555678999854333222222221 112
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccc-----------chhhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHH---HHHH
Q 002775 297 NKQRVATVVAHELAHQWFGNLVTMEW-----------WTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDEC---TEGL 362 (882)
Q Consensus 297 ~~~~~~~~iaHElaHqWfGnlVt~~~-----------w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 362 (882)
..+....+++||..|-|-+-.+.+.- -.-+|+.|||++|+..+..-.. +-.. .++++... ..++
T Consensus 243 ky~~~l~llsHEyfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRs-gl~~-~~~~l~~la~tl~~~ 320 (558)
T COG3975 243 KYQDLLGLLSHEYFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRS-GLIS-LETYLNYLAKTLARY 320 (558)
T ss_pred HHHHHHHHHHHHHHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHh-ccCc-HHHHHHHHHHHHHHH
Confidence 24667899999999999987776643 2459999999999997654321 1101 12333322 2222
Q ss_pred hhhcccCCccccccCccceecCCcccccccccccc--ccchhHHHHHHHHhh-----CHHHHHHHHHHHHHHhcc--CCC
Q 002775 363 RLDGLAESHPIEHIGSFQVEVNHTGEIDEIFDAIS--YRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNA 433 (882)
Q Consensus 363 ~~d~~~~~~pi~~~~~~~~~~~~~~~~~~~f~~i~--Y~Kga~vl~mL~~~l-----G~~~F~~~l~~yl~~~~~--~~~ 433 (882)
..-...--.|+...+. +..+.....-...-+.+. |.||++|--+|...| |+..+...|+.+.+.+.. +..
T Consensus 321 ~~~~gRl~~~laEsS~-~awik~yr~d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~ 399 (558)
T COG3975 321 LNTPGRLRQSLAESSF-DAWIKYYRPDENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGY 399 (558)
T ss_pred hcCCceeccccccccc-chhHHhhcccccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCC
Confidence 2222221233331111 011111111011112233 899999999999888 577799999999988776 567
Q ss_pred ChHHHHHHHHhccCCCHHHHHHhhhcCCCcceEEEEEeCcEEEEEEEe
Q 002775 434 KTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQ 481 (882)
Q Consensus 434 ~~~d~~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~~~~~l~Q~r 481 (882)
+++|+...+++++|.++..||+..+++.--|.+.---....+++++++
T Consensus 400 t~e~v~av~~~~tg~dl~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~ 447 (558)
T COG3975 400 TPEDVQAVLENVTGLDLATFFDEYIEGTEPPPLNPLLERFGLTFTPKP 447 (558)
T ss_pred CHHHHHHHHHhhccccHHHHHHHHhhcCCCCChhhhhhhcceEEEecC
Confidence 899999999999999999999999998876665433333456666654
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.15 E-value=5.9e-11 Score=111.05 Aligned_cols=106 Identities=29% Similarity=0.503 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHhcCccccccchhhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHHHHHHhhhcccCCccccccCc
Q 002775 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEHIGS 378 (882)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~ 378 (882)
..+..+++||++|+|+++.+........|++||+|+|++.. ... .+.......+..+......++.
T Consensus 23 ~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~----~~~------~~~~~~~~~~~~~~~~~~~~l~---- 88 (128)
T PF13485_consen 23 DWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGR----IED------EFDEDLKQAIESGSLPPLEPLN---- 88 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcC----ccc------hhHHHHHHHHHcCCCCChHHHh----
Confidence 34668999999999999999877788899999999999932 101 1112222333333333333332
Q ss_pred cceecCCccccccccccccccchhHHHHHHHHhhCHHHHHHHHHHH
Q 002775 379 FQVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 424 (882)
Q Consensus 379 ~~~~~~~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~~~F~~~l~~y 424 (882)
.... ....+....|.+|++++++|....|++.|++.|++|
T Consensus 89 --~~~~----~~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 89 --SSFD----FSWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred --cccc----ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1111 134455678999999999999999999999999876
No 13
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.74 E-value=0.00092 Score=72.04 Aligned_cols=222 Identities=20% Similarity=0.233 Sum_probs=123.0
Q ss_pred cCCeEEEEEEcCC-----chh--hHHHHHH-HHH--HHHHHHHHHhCCCC-----CCCCcc------eeec---CCCC-C
Q 002775 216 SDGIKVRVYCQVG-----KAN--QGKFALN-VAV--KTLELYKEYFAVPY-----SLPKLD------MIAI---PDFA-A 270 (882)
Q Consensus 216 ~~g~~v~v~~~~~-----~~~--~~~~~l~-~~~--~~l~~~e~~~g~~y-----P~~k~d------~v~~---p~~~-~ 270 (882)
.+|..+.||...+ ... .++...+ ... ++-+...+.||-|+ ..+|++ +|.+ |+.. .
T Consensus 16 ~~g~~vnvWVed~e~~~~~is~~~~~~l~~~F~~~~~iYp~~~~ifG~pwg~d~d~~~~I~~~~~v~iviln~~~~~~~~ 95 (366)
T PF10460_consen 16 YDGRTVNVWVEDGEYGSNKISDAQADSLAQEFDNSGKIYPRLVEIFGEPWGSDVDGNGKIPTGQPVDIVILNFNPDGSPY 95 (366)
T ss_pred cCCcEEEEEEEcCccCccccCHHHHHHHHHHhccccccchhHHHhcCCCCCCCCCCCCcccCCCceEEEEEecCCCCCce
Confidence 4678888998766 221 2222222 222 35566677888663 234443 5554 2211 1
Q ss_pred c----------------ccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHH--hcCcccccc--chhhhhhh
Q 002775 271 G----------------AMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW--FGNLVTMEW--WTHLWLNE 330 (882)
Q Consensus 271 g----------------amE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW--fGnlVt~~~--w~d~WL~E 330 (882)
| .-.|.|.++|-....++.... .....+..++|||+-|+= .-+.|...- -.|.||||
T Consensus 96 G~~GYF~s~d~~~~~~~~~SNe~e~~YiD~~~~~~~~~---~~~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE 172 (366)
T PF10460_consen 96 GTAGYFWSSDLYPKSSNPYSNESEYFYIDSETLYLGGN---SGPDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNE 172 (366)
T ss_pred eeeeeecHHHcccccccCCCcceeEEEEecHHhhccCC---ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 2 233445555544433332221 123457899999999984 333444432 36999999
Q ss_pred hHHHHHHHHHHhhhCcchhHHHHHHHHHHHHHhhh-cccCCccccccCccceecCCccccccccccccccchhHHHHHHH
Q 002775 331 GFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLD-GLAESHPIEHIGSFQVEVNHTGEIDEIFDAISYRKGASVIRMLQ 409 (882)
Q Consensus 331 Gfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~pi~~~~~~~~~~~~~~~~~~~f~~i~Y~Kga~vl~mL~ 409 (882)
|+|.-+|.++..+..+..+. ........+..+ .....+.+. .- ... .-.-..|....++..-|.
T Consensus 173 ~lS~~aEdl~s~~~~~~~n~---i~d~R~~~y~~~~~~~~~~~l~------~w-~~~-----g~~l~sYs~s~~Fg~~L~ 237 (366)
T PF10460_consen 173 MLSMSAEDLYSSKIDPGYNN---IRDSRIPYYNNYTSGNYNCSLT------AW-SSF-----GDSLASYSSSYSFGAYLY 237 (366)
T ss_pred HHHHHHHHHHhcCCCcccCc---cccccHHHHhhccccCCCccee------ec-CCC-----ccccccchhHHHHHHHHH
Confidence 99999999887776433211 001111111111 111112221 10 111 111346999999999998
Q ss_pred HhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHh-c-cCCCHHHHHHhhhcCC
Q 002775 410 NYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE-G-SGEPVNKLMNSWTKQK 461 (882)
Q Consensus 410 ~~lG~~~F~~~l~~yl~~~~~~~~~~~d~~~~l~~-~-sg~~l~~~~~~W~~~~ 461 (882)
...|.+.+++.|.. ....+..+..+.+.+ + .+.++.++|.+|...-
T Consensus 238 rQ~G~~~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~~w~~A~ 285 (366)
T PF10460_consen 238 RQYGGDFYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLRRWGVAL 285 (366)
T ss_pred HHcChHHHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 88898887776651 133566776666544 3 3668999999997655
No 14
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=96.38 E-value=0.49 Score=52.08 Aligned_cols=304 Identities=17% Similarity=0.147 Sum_probs=142.3
Q ss_pred EEEEEEEeeccCCCCCCCeeEEEEEEEECc--ccc-----eeeEEeeccceEEEecccccccccCCCCCCceEEeCcCce
Q 002775 474 KLELEQSQFLSSGSPGDGQWIVPITLCCGS--YDV-----CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 546 (882)
Q Consensus 474 ~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 546 (882)
+++++|......++.....|.|||.+..-+ +.. ...+.++..++++.+.++. .. ...-++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~-------~~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVS-------EK--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES----------S----EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCC-------CC--ceeehhcCcc
Confidence 578999876666666667999999985422 222 1235678888999997642 22 4677889999
Q ss_pred eEEEEEcCH--HHHHHHHHHHHccCCChhhHH--------HHHHHHHHHHHhc-cCCH-HHHHHHHHhc-c-CCCcHHHH
Q 002775 547 GFYRVKYDK--DLAARLGYAIEMKQLSETDRF--------GILDDHFALCMAR-QQTL-TSLLTLMASY-S-EETEYTVL 612 (882)
Q Consensus 547 gyyRV~Yd~--~~w~~l~~~L~~~~i~~~~ra--------~li~D~~~la~~g-~l~~-~~~l~l~~~l-~-~E~~~~~w 612 (882)
.+-++.||- +-+.-|... + =+.-+|. ++|.+...-..+| .... ..+++.++.+ . .+.|...-
T Consensus 77 APV~l~~~~s~~eL~~L~~~---D-~D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~~d~a~~ 152 (367)
T PF11940_consen 77 APVKLEYDYSDEELAFLAAH---D-SDPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDDLDPAFK 152 (367)
T ss_dssp SSSEEE----HHHHHHHHHH-----SSHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SSS-HHHH
T ss_pred cceEecCCCCHHHHHHHHHc---C-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCCCCHHHH
Confidence 999998863 333333332 1 1223332 1111111111221 1112 2244444432 2 22333333
Q ss_pred HHHHHH--HHHHHHHHhccChH--------HHHHHHHHHHHHHHHHHHhcCCcc---CCCCCHHHHHHHHHHHHHHHhcC
Q 002775 613 SNLITI--SYKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLG 679 (882)
Q Consensus 613 ~~~~~~--l~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~g 679 (882)
..++.. ...|...+..-+|+ ....+..-++..+..+|+++.-.. ...+..-.+.||..++.+++..+
T Consensus 153 A~~L~LPs~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l~~~l~~~y~~~~~~~~y~~~~~~~g~RaLkn~~L~yL~~~~ 232 (367)
T PF11940_consen 153 ALLLTLPSESELAEQMENIDPDAIHAAREALRRALAQALRDELLALYQALAATGPYSPDAEAAGRRALKNLCLSYLAAAD 232 (367)
T ss_dssp HHHTS---HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHTTTTT-SHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 322222 11222111110111 222233333344555666651111 12234456899999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHH
Q 002775 680 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIV 759 (882)
Q Consensus 680 ~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~v~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll 759 (882)
.++..+.|.+.|+.-. + --.|-+.+.+++..-....++..+..++++++....-+|--.+.|.+...| .+
T Consensus 233 ~~~~~~la~~qy~~A~---n-----MTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~~--~l 302 (367)
T PF11940_consen 233 DPEAAELAQEQYKSAD---N-----MTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSPD--TL 302 (367)
T ss_dssp CTHHHHHHHHHHHHSS---S-----HHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--STT--HH
T ss_pred chHHHHHHHHHHHhCC---C-----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCcc--HH
Confidence 9999999999997641 1 112232223333211111233456666666666555677777777766544 56
Q ss_pred HHHHHHhccCcCCcccceeeeeeccc-cHHHHHHHHHHHHHHHHHHhCCC
Q 002775 760 LEVLNFLLSSEVRSQDAVYGLAVSIE-GRETAWKWLKDNWDHISKTWGSG 808 (882)
Q Consensus 760 ~~~L~~~l~~~i~~qd~~~~~~v~~~-g~~~~~~fl~~n~~~i~~~~~~~ 808 (882)
.++-.+.-++.+.. -..| .|.+.--|...|-..+...=|+|
T Consensus 303 ~~V~~L~~Hp~F~~--------~NPNrvRaLig~Fa~~N~~~FH~~dG~G 344 (367)
T PF11940_consen 303 ERVKKLMQHPAFDL--------KNPNRVRALIGAFAQANPVQFHAADGSG 344 (367)
T ss_dssp HHHHHHTTSTTTTT--------T-HHHHHHHHHHHHHC-HHHHT-TTSHH
T ss_pred HHHHHHhcCCCCCC--------CCCcHHHHHHHHHHhcChhhhcCCCCcH
Confidence 66655544442211 1234 56666667767776666655543
No 15
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=96.33 E-value=0.0015 Score=59.09 Aligned_cols=43 Identities=23% Similarity=0.477 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhcCccc-----------cccchhhhhhhhHHHHHHHHHHhh
Q 002775 301 VATVVAHELAHQWFGNLVT-----------MEWWTHLWLNEGFATWVSYLAADS 343 (882)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt-----------~~~w~d~WL~EGfa~y~~~~~~~~ 343 (882)
...+++||+.|.|-+-.+. +.--+.+|+-|||++|++.+.+..
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~R 57 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVR 57 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHH
Confidence 4578999999999975544 455677999999999999876654
No 16
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=96.09 E-value=0.11 Score=52.24 Aligned_cols=171 Identities=19% Similarity=0.275 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCCCCcceeec--CCCCCcccc----cccceeeecccccccCCCCcHHHHHHHHHHHHHH
Q 002775 236 ALNVAVKTLELYKEYFAVP-YSLPKLDMIAI--PDFAAGAME----NYGLVTYRETALLYDDQHSAAANKQRVATVVAHE 308 (882)
Q Consensus 236 ~l~~~~~~l~~~e~~~g~~-yP~~k~d~v~~--p~~~~gamE----~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHE 308 (882)
+.....++..+..+.|-.+ .+-+..+.|.+ .++..-|-- +-.-|.++...+ -.... ....+..+..++.||
T Consensus 26 a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~gd~~~~~I~~S~~~i-~~~~~-~~~~~~Ei~Gvl~HE 103 (205)
T PF04450_consen 26 AEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSGDDDHKEIHFSARYI-AKYPA-DGDVRDEIIGVLYHE 103 (205)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEecCCCccEEEEeHHHH-hhccc-ccchHHHHHHHHHHH
Confidence 3444555666666666433 22333444332 333211111 113455655532 22111 123346788999999
Q ss_pred HHHHHhcCccccccchhhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHHHHHHhhhcccCCccccccCccceecCCccc
Q 002775 309 LAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEHIGSFQVEVNHTGE 388 (882)
Q Consensus 309 laHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~~~ 388 (882)
++|-|=.+--.. .--||-||+|.|+-..+- +.| .....|..
T Consensus 104 ~~H~~Q~~~~~~---~P~~liEGIADyVRl~aG--~~~--------------------~~w~~p~~-------------- 144 (205)
T PF04450_consen 104 MVHCWQWDGRGT---APGGLIEGIADYVRLKAG--YAP--------------------PHWKRPGG-------------- 144 (205)
T ss_pred HHHHhhcCCCCC---CChhheecHHHHHHHHcC--CCC--------------------ccccCCCC--------------
Confidence 999765443221 134899999999975520 000 00111111
Q ss_pred cccccccccccchhHHHHHHHH-hhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHh
Q 002775 389 IDEIFDAISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS 456 (882)
Q Consensus 389 ~~~~f~~i~Y~Kga~vl~mL~~-~lG~~~F~~~l~~yl~~~~~~~~~~~d~~~~l~~~sg~~l~~~~~~ 456 (882)
...++ -.|.-.|.+|.-|+. ..|+. |-+-|..=+.+..+ +.+++|..+ +|++++++++.
T Consensus 145 -~~~wd-~gY~~TA~FL~wle~~~~~~g-fV~~LN~~m~~~~y---~~~~~~~~l---~G~~v~~LW~e 204 (205)
T PF04450_consen 145 -GDSWD-DGYRTTARFLDWLEDNRYGKG-FVRRLNEAMRRDKY---SSDDFWKEL---LGKPVDELWAE 204 (205)
T ss_pred -CCCcc-cccHHHHHHHHHHHhcccCcc-HHHHHHHHHhhCCC---CcHhHHHHH---HCcCHHHHHhh
Confidence 02233 368899999999998 66644 44444444444444 556666554 58899988764
No 17
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.87 E-value=0.0046 Score=56.64 Aligned_cols=39 Identities=28% Similarity=0.314 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCccccccc--hhhhhhhhHHHHHHHHHH
Q 002775 303 TVVAHELAHQWFGNLVTMEWW--THLWLNEGFATWVSYLAA 341 (882)
Q Consensus 303 ~~iaHElaHqWfGnlVt~~~w--~d~WL~EGfa~y~~~~~~ 341 (882)
.+++||-+||=..|.=-..-- .=.|+.||||+|+|-...
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 589999999987664221111 128999999999996544
No 18
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=91.25 E-value=0.66 Score=46.54 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcceeecCCCCCc-----ccccccceeeecccccc-cCCCCcHHHHHHHHHHHHHHHHHH
Q 002775 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG-----AMENYGLVTYRETALLY-DDQHSAAANKQRVATVVAHELAHQ 312 (882)
Q Consensus 239 ~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~g-----amE~~gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHq 312 (882)
.+.+.+....+.+ |.+.+++.++|--+.+ .+...|-..+....+++ -+.. .....+..++|||+.|.
T Consensus 4 ~i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~~---~~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPND---YSLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCCc---ccHHHHHHHHHHHHHHH
Confidence 3445555555554 4557777655422222 11223333444443333 2221 23347889999999998
Q ss_pred HhcCccc----cccchhhhhhhhHHHHHHHHHHhhhC
Q 002775 313 WFGNLVT----MEWWTHLWLNEGFATWVSYLAADSLF 345 (882)
Q Consensus 313 WfGnlVt----~~~w~d~WL~EGfa~y~~~~~~~~~~ 345 (882)
+--..+. ...--|.-+.||+|.+++........
T Consensus 77 ~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 77 CRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 6433322 11223567899999999976655443
No 19
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.68 E-value=4.3 Score=48.35 Aligned_cols=198 Identities=18% Similarity=0.197 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHccCCChhhHHHHHHHHHHHHH-hccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChH-
Q 002775 555 KDLAARLGYAIEMKQLSETDRFGILDDHFALCM-ARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPE- 632 (882)
Q Consensus 555 ~~~w~~l~~~L~~~~i~~~~ra~li~D~~~la~-~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~- 632 (882)
+.....|.+.+..+.++..++++++.=+...++ .-.--.+.+++|++.=.-..+...+.+++-.+..+.+..-...+.
T Consensus 356 ~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~ 435 (574)
T smart00638 356 PPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC 435 (574)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 345667777777788999999999887777763 333334555566654333456678888887777766544222211
Q ss_pred ---HHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhh
Q 002775 633 ---LLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRK 709 (882)
Q Consensus 633 ---~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~ 709 (882)
....+..|+...+....++ ++ ..-+...|..++..|++..+.. +..++.+ ....|+.+|-
T Consensus 436 ~~~~~~~~~~~l~~~l~~~~~~-------~~----~~~~~~~LkaLGN~g~~~~i~~----l~~~l~~--~~~~~~~iR~ 498 (574)
T smart00638 436 PDFVLEELLKYLHELLQQAVSK-------GD----EEEIQLYLKALGNAGHPSSIKV----LEPYLEG--AEPLSTFIRL 498 (574)
T ss_pred ChhhHHHHHHHHHHHHHHHHhc-------CC----chheeeHHHhhhccCChhHHHH----HHHhcCC--CCCCCHHHHH
Confidence 1233444444444433221 11 1225677888999999877644 4445543 3457888886
Q ss_pred hhheeeeeecccCCHHHHHHHHHHHHcCCCHHH-HHHH-HHHhCCCCCHHHHHHHHHHhccC
Q 002775 710 AAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTRI-LSSLASCPDVNIVLEVLNFLLSS 769 (882)
Q Consensus 710 ~vy~~~~~~v~~g~~~~~~~l~~~y~~s~~~~e-k~~l-l~aL~ct~d~~ll~~~L~~~l~~ 769 (882)
....++-..+..-....-+.++..|.+...+.| |... +..|-|-++...++++.+.+..+
T Consensus 499 ~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E 560 (574)
T smart00638 499 AAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKE 560 (574)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc
Confidence 544444322223456678889999998766555 5554 44455669999999998887654
No 20
>PRK04860 hypothetical protein; Provisional
Probab=89.46 E-value=0.85 Score=43.81 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc--cccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHH
Q 002775 236 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME--NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (882)
Q Consensus 236 ~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE--~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (882)
+...+...+..-+++||.|+|.|++.+=.- ...||+- .-+-|.++.. ++.+ .....+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~R--~rtaG~~~l~~~~I~~Np~--ll~~-----~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQR--GTSAGTAWLQSNEIRLNPV--LLLE-----NQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEeec--chhhcchhHhcCCeeeCHH--HHhh-----CcHHHHHhHHHHHHHHHH
Confidence 445667778888899999888876544321 1124432 2233444433 2222 134567889999999987
Q ss_pred h
Q 002775 314 F 314 (882)
Q Consensus 314 f 314 (882)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 3
No 21
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=84.74 E-value=0.93 Score=45.80 Aligned_cols=40 Identities=33% Similarity=0.276 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhcCccccccchhhhhhhhHHHHHHHHHHhhh
Q 002775 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (882)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~ 344 (882)
..++.+|-||+|||=|.-- +|.=+||+||+..|-..+++.
T Consensus 195 ~~lA~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 195 TYLASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHHH
Confidence 4689999999999965421 355689999999998877764
No 22
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=83.73 E-value=6.5 Score=39.66 Aligned_cols=92 Identities=21% Similarity=0.333 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHh
Q 002775 235 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (882)
Q Consensus 235 ~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (882)
.+.+.....+..|++.+|.++ +++.+=-.-. .-|....-|.|+|+-.-+.+.+. -+..+|+|||||--.
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~~--------~idYVvvHEL~Hl~~ 177 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLPP--PKIKIRDMKS-RWGSCSSKGNITLNWRLVMAPPE--------VIDYVVVHELCHLRH 177 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCCc--ceEEEeehhh-ccccCCCCCcEEeecccccCCcc--------HHHHHHHHHHHHhcc
Confidence 445566777788888888643 3433322222 23555556777877763333332 478899999999876
Q ss_pred cCccccccchhhhhhhhHHHHHHHHHHhhhCcchhHHHH
Q 002775 315 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (882)
Q Consensus 315 GnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~ 353 (882)
-|- -...| ..+++..|+|.....
T Consensus 178 ~nH-----s~~Fw-----------~~v~~~~Pd~k~~~~ 200 (205)
T PF01863_consen 178 PNH-----SKRFW-----------ALVEKYMPDYKERRK 200 (205)
T ss_pred CCC-----CHHHH-----------HHHHHHCcCHHHHHH
Confidence 553 33344 344567788765433
No 23
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=83.06 E-value=1.2 Score=47.82 Aligned_cols=39 Identities=36% Similarity=0.423 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhcCccccccchhhhhhhhHHHHHHHHHHhhh
Q 002775 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (882)
Q Consensus 300 ~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~ 344 (882)
.++.+|-||+|||=+. .+ +|.=+||+||++.+..++.+.
T Consensus 164 ~LA~LIfHELaHq~~Y----v~--~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 164 ELARLIFHELAHQTLY----VK--GDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHHhhceee----cC--CCchhhHHHHHHHHHHHHHHH
Confidence 6899999999999332 11 356689999999998877664
No 24
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=81.13 E-value=1.7 Score=41.29 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=34.2
Q ss_pred HHHHHHH-HHhCCCCCCCCcceeecCCCCCccccc-ccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 002775 242 KTLELYK-EYFAVPYSLPKLDMIAIPDFAAGAMEN-YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (882)
Q Consensus 242 ~~l~~~e-~~~g~~yP~~k~d~v~~p~~~~gamE~-~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (882)
+.+..++ .+|+-++|-+++..-.--.-..|.-.. .+.|.++.. ++ . ......+..+|.|||+|.+..
T Consensus 5 ~~~~~~n~~~F~~~l~~~~i~w~~r~~~~~G~~~~~~~~I~ln~~-l~-~-----~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHPKVVWNKRLRKTGGRCLLKSAEIRLNPK-LL-T-----ENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEehhhhhhhHHhhcCCCEEEeCHH-HH-h-----hccHHHHHhhHHHHHHHHHHH
Confidence 3444455 889877776532221110111232221 334444443 11 1 112345778999999999964
No 25
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=76.79 E-value=23 Score=42.54 Aligned_cols=196 Identities=15% Similarity=0.137 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHccCCChhhHHHHHHHHHHHH-HhccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccC----
Q 002775 556 DLAARLGYAIEMKQLSETDRFGILDDHFALC-MARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADAR---- 630 (882)
Q Consensus 556 ~~w~~l~~~L~~~~i~~~~ra~li~D~~~la-~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~---- 630 (882)
.....|.+.+..+.++..+.++++.-+.... +.-.--.+.+++|++.-....+..++.+++-.+..+.+..-...
T Consensus 395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 3455667777777888888777765554444 21111123333344332234556777877777777655432210
Q ss_pred ---h---HHHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCC
Q 002775 631 ---P---ELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLP 704 (882)
Q Consensus 631 ---~---~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~ 704 (882)
+ ...+.+..++.+.+....+ ..+..-+...|..++..|++..+.. +..++.+ ....|
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~-----------~~~~~~~~~~LkaLgN~g~~~~i~~----l~~~i~~--~~~~~ 537 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVS-----------RGDEEEKIVYLKALGNLGHPESIPV----LLPYIEG--KEEVP 537 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHT-GGGHHH----HHTTSTT--SS-S-
T ss_pred cccccchhhHHHHHHHHHHHHHHHhh-----------ccCHHHHHHHHHHhhccCCchhhHH----HHhHhhh--ccccc
Confidence 1 1112222222222221111 1123456677888889999865543 4455554 22688
Q ss_pred cchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHH-HHHHHH-HhCCCCCHHHHHHHHHHhcc
Q 002775 705 PDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTRILS-SLASCPDVNIVLEVLNFLLS 768 (882)
Q Consensus 705 ~dlr~~vy~~~~~~v~~g~~~~~~~l~~~y~~s~~~~e-k~~ll~-aL~ct~d~~ll~~~L~~~l~ 768 (882)
..+|-++.-++.+.+..-.....+.++..|.+...+.| |...+. .|-|-+++..++++.+.+-.
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWN 603 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhh
Confidence 89997554444332334455678999999999877665 444333 34566899999998877643
No 26
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=74.22 E-value=1.1e+02 Score=37.58 Aligned_cols=129 Identities=13% Similarity=0.167 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCcc-ccccchhhhhhhhHHHHHHHHHHhhhCc---chhH---HHHHHHHHHHHHhhhcccCCccccc
Q 002775 303 TVVAHELAHQWFGNLV-TMEWWTHLWLNEGFATWVSYLAADSLFP---EWKI---WTQFLDECTEGLRLDGLAESHPIEH 375 (882)
Q Consensus 303 ~~iaHElaHqWfGnlV-t~~~w~d~WL~EGfa~y~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~d~~~~~~pi~~ 375 (882)
-.+-|||+|.+=+..+ .-..+.+.| |-=+|.++++..+..... .|-+ ....+...+.+. ..+.
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~----i~~~----- 307 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIAL----IDNN----- 307 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHH----HhcC-----
Confidence 3678999999988877 444566888 777888888765542111 1111 001111111110 0000
Q ss_pred cCccceecCCcccccccccccc-ccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCC--ChHHHHHHHHhc-cCCCHH
Q 002775 376 IGSFQVEVNHTGEIDEIFDAIS-YRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNA--KTEDLWAALEEG-SGEPVN 451 (882)
Q Consensus 376 ~~~~~~~~~~~~~~~~~f~~i~-Y~Kga~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~--~~~d~~~~l~~~-sg~~l~ 451 (882)
..|+... -.|=..+..|+...-|++.|+..=+.|=+. .-.+. ..-.+++.+... ++.|+.
T Consensus 308 ---------------~~~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~~D~~ 371 (775)
T PF03272_consen 308 ---------------KPFDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSGYDFT 371 (775)
T ss_pred ---------------CCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcCCchH
Confidence 0122222 245555555888889999999887777665 22222 222344455555 899999
Q ss_pred HHHHhh
Q 002775 452 KLMNSW 457 (882)
Q Consensus 452 ~~~~~W 457 (882)
.+++-|
T Consensus 372 p~~~l~ 377 (775)
T PF03272_consen 372 PYFQLV 377 (775)
T ss_pred hHHHHh
Confidence 999988
No 27
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=73.77 E-value=4.1 Score=44.21 Aligned_cols=31 Identities=39% Similarity=0.642 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhcCccccccchhhhhhhhHHHHHHHHHHhh
Q 002775 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343 (882)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~ 343 (882)
.-.++|||+|||= | ...|.=|.|+++++..+
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~ 226 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACIN 226 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhc
Confidence 5579999999994 3 24888999999987654
No 28
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=67.84 E-value=35 Score=37.64 Aligned_cols=54 Identities=26% Similarity=0.305 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhcCccccccchhhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHHH
Q 002775 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT 359 (882)
Q Consensus 300 ~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~ 359 (882)
+-...|..+.| |+|.--...+ =+|||.|+|..+.++.++|.+....+.++.+.+
T Consensus 248 Reil~ivR~ea-~YF~PQ~qTk-----VMNEGWAtfWHytiln~lydE~~~~~~~~lEfL 301 (495)
T COG2719 248 REILRIVRKEA-QYFYPQRQTK-----VMNEGWATFWHYTILNHLYDEGKLTERAMLEFL 301 (495)
T ss_pred HHHHHHHHHHH-HHhcchHHHH-----HhhhhHHHHHHHHHHHhhhhhcccChHHHHHHH
Confidence 33344555555 4443333322 389999999999999999888777666666554
No 29
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=63.78 E-value=11 Score=35.96 Aligned_cols=74 Identities=24% Similarity=0.282 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCCC--cceeecCCCC---Ccccccccceeeecccc-cccCCCCcHHHHHHHHHH
Q 002775 231 NQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFA---AGAMENYGLVTYRETAL-LYDDQHSAAANKQRVATV 304 (882)
Q Consensus 231 ~~~~~~l~~~~~~l~~~e~~~g~~yP~~k--~d~v~~p~~~---~gamE~~gli~~~e~~l-l~~~~~~~~~~~~~~~~~ 304 (882)
..+..|...+.++.+||.+.|| .=++.. ..++..-.+. ..|.=+-..++|.+-.- .+.+- ..-..+
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAfW~g~~m~yGdG~~~~f~~~-------~~~lDV 138 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAFWNGSQMVYGDGDGQIFKPF-------ASSLDV 138 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EEE-SSSEEEE---SSSBS-G-------GG-HHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCccccCCEEEEECCCCcccccC-------ccccce
Confidence 4456677788999999999999 555542 3333321111 12322223344433211 11111 112568
Q ss_pred HHHHHHHH
Q 002775 305 VAHELAHQ 312 (882)
Q Consensus 305 iaHElaHq 312 (882)
+||||+|-
T Consensus 139 vaHEltHG 146 (150)
T PF01447_consen 139 VAHELTHG 146 (150)
T ss_dssp HHHHHHHH
T ss_pred eeeccccc
Confidence 99999995
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=62.87 E-value=12 Score=31.50 Aligned_cols=75 Identities=24% Similarity=0.304 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHH
Q 002775 665 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 744 (882)
Q Consensus 665 ~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~v~~g~~~~~~~l~~~y~~s~~~~ek~ 744 (882)
...|..++..++..++++.+....++ +.+ -++.+|..+..++.. .|+.+.++.|.+.+.++.+..-|.
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~~~----l~d-----~~~~vr~~a~~aL~~---i~~~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALIEL----LKD-----EDPMVRRAAARALGR---IGDPEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHH----HTS-----SSHHHHHHHHHHHHC---CHHHHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHH----HcC-----CCHHHHHHHHHHHHH---hCCHHHHHHHHHHHcCCCcHHHHH
Confidence 46778888888888887665544443 333 246788866555433 467777889999888877766688
Q ss_pred HHHHHhC
Q 002775 745 RILSSLA 751 (882)
Q Consensus 745 ~ll~aL~ 751 (882)
.++.|||
T Consensus 82 ~a~~aL~ 88 (88)
T PF13646_consen 82 AAAEALG 88 (88)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 8888875
No 31
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=59.95 E-value=13 Score=36.99 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCccccccchhhhhhhhHHHHHHHHHHhh
Q 002775 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343 (882)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~ 343 (882)
...++|||+.|-|.- ..-----+.++-||+.+.+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 457899999999962 11111236789999999999987664
No 32
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=59.40 E-value=69 Score=27.88 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=32.9
Q ss_pred CCCEEEEEec-Cce--eeEEEEeeccCCCCccccceeEEEecCCeEEEEEeCCccCCceEEEEEEEEe
Q 002775 45 DTKFIVLNAA-DLT--INNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEG 109 (882)
Q Consensus 45 ~~~~i~L~~~-~l~--i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~l~~g~~~l~i~y~g 109 (882)
+...|.|... .++ ...+.+.+.++ ..+.......+.....+++.++.+|++|.|+|.-.--+
T Consensus 18 ~P~~v~L~F~e~v~~~~s~v~v~~~~g---~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 18 APEEVTLTFSEPVEPGFSSVTVTDPDG---KRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVS 82 (97)
T ss_dssp --SSEEEEESS---CCC-EEEEEEEEE---TTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEE
T ss_pred CCCEEEEEeCCCCccCccEEEEEcCCC---ceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEe
Confidence 3456777665 244 66777765332 22333334444456789999999999999977644433
No 33
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=55.58 E-value=11 Score=42.18 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=33.8
Q ss_pred CCCCcceeecCCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHH
Q 002775 256 SLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (882)
Q Consensus 256 P~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (882)
|-..++++.|-+-...|.-.+|.-++-.+.++...+ +...++.|||||++|-=
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae-----~esElagViAHEigHv~ 142 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE-----NESELAGVIAHEIGHVA 142 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC-----CHHHHHHHHHHHHHHHh
Confidence 334478888876656666666654444443444332 23468999999999963
No 34
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=55.29 E-value=9.3 Score=39.06 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCCccccccc----ceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCc
Q 002775 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYG----LVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNL 317 (882)
Q Consensus 242 ~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~~g----li~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnl 317 (882)
+.++-+.+..|.+.|.+++-++-.|.. .|.-..+ .|..... ++.. .+...+..++|||++|-.-++.
T Consensus 35 ~~v~~l~~~~~~~~~~~~v~v~~~~~~--NA~~~g~~~~~~I~v~~~-ll~~------~~~~el~aVlaHElgH~~~~h~ 105 (226)
T PF01435_consen 35 RIVEELARRAGLGIPPPRVYVIDSPSP--NAFATGGGPRKRIVVTSG-LLES------LSEDELAAVLAHELGHIKHRHI 105 (226)
T ss_dssp HHHHHHHHHHHCTSS--EEEEE--SSE--EEEEETTTC--EEEEEHH-HHHH------SSHHHHHHHHHHHHHHHHTTHC
T ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCCC--cEEEEccCCCcEEEEeCh-hhhc------ccHHHHHHHHHHHHHHHHcCCc
Confidence 333333444465666666665555543 3322221 2444444 4421 1344688999999999988766
Q ss_pred ccc
Q 002775 318 VTM 320 (882)
Q Consensus 318 Vt~ 320 (882)
...
T Consensus 106 ~~~ 108 (226)
T PF01435_consen 106 LKS 108 (226)
T ss_dssp CCC
T ss_pred chH
Confidence 554
No 35
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=52.65 E-value=39 Score=32.02 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=33.5
Q ss_pred ccccceeEEEecCCeEEEEEeCCccCCc-eEEEEEEEEeeeCCCCceeEE
Q 002775 72 KALEPTKVELVEADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYR 120 (882)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~i~~~~~l~~g-~~~l~i~y~g~~~~~~~G~y~ 120 (882)
+.+....+..+.++..+.|.|.+|++|| +++|.+ .+.-+....|.|.
T Consensus 75 ~~ipl~~v~~~~~~~~i~I~f~~PV~pG~tv~V~l--~~v~NP~~~G~Y~ 122 (146)
T PF10989_consen 75 ESIPLAEVEWDEDGRTITITFDEPVPPGTTVTVVL--SPVRNPRSGGTYQ 122 (146)
T ss_pred CccCceEEEEcCCCCEEEEEeCCCCCCCCEEEEEE--EeeeCCCCCCeEE
Confidence 3445567888899999999999999999 555554 4433444457664
No 36
>PRK04351 hypothetical protein; Provisional
Probab=52.48 E-value=11 Score=35.91 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH
Q 002775 298 KQRVATVVAHELAHQ 312 (882)
Q Consensus 298 ~~~~~~~iaHElaHq 312 (882)
...+..+|+|||+|-
T Consensus 58 ~~~l~~vv~HElcH~ 72 (149)
T PRK04351 58 LEELIGIIKHELCHY 72 (149)
T ss_pred HHHHHhhHHHHHHHH
Confidence 456889999999995
No 37
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=51.26 E-value=24 Score=39.44 Aligned_cols=107 Identities=23% Similarity=0.272 Sum_probs=58.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCC--cceeecCCCCCcccccccceeeecccccccCCCCcH-HHHHHHHH
Q 002775 227 VGKANQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAA-ANKQRVAT 303 (882)
Q Consensus 227 ~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k--~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~-~~~~~~~~ 303 (882)
++....+..|-..+.+..+||.+.||.. .++. +.++..-.| | -++.-....-..|+|....... .....-..
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fgr~-S~Dn~g~~l~s~vHy--G--~~ynNAfWdG~qMvyGDGDG~~f~~~S~sLD 339 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFGRN-SYDNNGMPLVSTVHY--G--KNYNNAFWDGDQMVYGDGDGSFFTPFSGSLD 339 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhccc-CcCCCCCceEEEEee--c--cccccccccCceeEeecCCcceecccccccc
Confidence 3344455667778899999999999933 4432 444433333 2 1222222223334554331110 00111246
Q ss_pred HHHHHHHHHH---hcCccccccchhhhhhhhHHHHHHHHH
Q 002775 304 VVAHELAHQW---FGNLVTMEWWTHLWLNEGFATWVSYLA 340 (882)
Q Consensus 304 ~iaHElaHqW---fGnlVt~~~w~d~WL~EGfa~y~~~~~ 340 (882)
++||||.|-- --+++.-..-. =|||+|+.-+.-.+
T Consensus 340 VvAHElTHGvtq~tA~L~Y~~qsG--ALNEsfSDvfG~~i 377 (507)
T COG3227 340 VVAHELTHGVTQQTAGLIYRGQSG--ALNESFSDVFGTLI 377 (507)
T ss_pred eehhhhcchhhhhccCceecCCCC--chhhHHHHHHHHHH
Confidence 8999999954 44555444322 48999999988544
No 38
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=49.12 E-value=1.1e+02 Score=31.46 Aligned_cols=93 Identities=20% Similarity=0.314 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHH
Q 002775 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (882)
Q Consensus 234 ~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (882)
+.+.+.....+..|...+|.+++--++. ..-.. -|+--.-|-|.+... +..- ...-+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~k~~-WGScs~~~~i~~~~~-l~~~-------p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRAIKLK--NMKRR-WGSCSKAGEIRFNWR-LVMA-------PEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceeee--eccce-eeeecCCCcEEeehh-hhcC-------CHHHHHHHHHHHHHHHh
Confidence 3555667777888899999776533322 11111 122223333443333 1111 22357889999999998
Q ss_pred hcCccccccchhhhhhhhHHHHHHHHHHhhhCcchhHHHH
Q 002775 314 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (882)
Q Consensus 314 fGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~ 353 (882)
..|- ++ .+| ..++.++|++.....
T Consensus 188 e~nH-s~----~Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKNH-SK----RFW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhhc-cH----HHH-----------HHHHHHCCChHHHHH
Confidence 8872 22 233 344667888765544
No 39
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=47.24 E-value=15 Score=32.85 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhcCcc
Q 002775 301 VATVVAHELAHQWFGNLV 318 (882)
Q Consensus 301 ~~~~iaHElaHqWfGnlV 318 (882)
...+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 467999999999988654
No 40
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=46.45 E-value=14 Score=35.45 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 002775 298 KQRVATVVAHELAHQWFG 315 (882)
Q Consensus 298 ~~~~~~~iaHElaHqWfG 315 (882)
...+..+|.|||+|.|..
T Consensus 57 ~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 57 EEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 457889999999999974
No 41
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.42 E-value=3e+02 Score=34.14 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=74.2
Q ss_pred ChhhHHHHHHHHHHHHHhccCCH-HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Q 002775 571 SETDRFGILDDHFALCMARQQTL-TSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSA 649 (882)
Q Consensus 571 ~~~~ra~li~D~~~la~~g~l~~-~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 649 (882)
|...|.|+-.=.-....+.+... ..+++-++++-+.++...|..++-.|..+-+.++-...+...-+..-+..++..++
T Consensus 102 p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il 181 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDIL 181 (1010)
T ss_pred chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 66667666444434444444432 55677777777778899999999999888877652212223333333333333222
Q ss_pred HhcCCccCCCCCHHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHhc-------CC---CCCCCCcchhh
Q 002775 650 EKLGWDSKPGESHLDALLRGEIFT---ALALLGHKETLNEASKRFHAFLA-------DR---TTPLLPPDIRK 709 (882)
Q Consensus 650 ~~lg~~~~~~~~~~~~~lr~~il~---~ac~~g~~~c~~~A~~~f~~~~~-------~~---~~~~i~~dlr~ 709 (882)
+.. ..--..++.....+..+|++ .+|.+.-+.-. .+.+.|..||. .+ ..-.++|+.|+
T Consensus 182 ~~~-~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L-~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~ 252 (1010)
T KOG1991|consen 182 QIF-NGLLSQESYQSVELQKLILKIFKSLIYYELPLEL-SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRS 252 (1010)
T ss_pred HHH-HhhccccchHHHHHHHHHHHHHHHHHHHhCCHHh-hCchhHHHHHHHHHHHHcCCCChhcccCChhhcc
Confidence 221 11112234444555555555 55666654333 34556666663 21 23457888887
No 42
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=44.01 E-value=82 Score=31.22 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Q 002775 295 AANKQRVATVVAHELAHQWFGNL 317 (882)
Q Consensus 295 ~~~~~~~~~~iaHElaHqWfGnl 317 (882)
.-....+..++.|||||.++|+-
T Consensus 76 fl~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 76 FLPYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred EeeHHHHHHHHHHHHHhcccCCc
Confidence 34556789999999999999874
No 43
>PRK03001 M48 family peptidase; Provisional
Probab=43.75 E-value=37 Score=36.26 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCc--cc-ccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcC
Q 002775 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG--AM-ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (882)
Q Consensus 240 ~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~g--am-E~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (882)
..+.++-+.+..|+| .|++-++-.+...+- |. .+.+.|...+. ++ +. -+...+..++|||++|-=-++
T Consensus 69 L~~~v~~la~~~g~~--~p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~h 139 (283)
T PRK03001 69 FYRMVRELAQRAGLP--MPKVYLINEDQPNAFATGRNPEHAAVAATTG-IL-RV-----LSEREIRGVMAHELAHVKHRD 139 (283)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEecCCCcceEEecCCCCCeEEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHhCCC
Confidence 446666667777865 456554433221111 11 11233544444 22 11 123468999999999975443
No 44
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=43.09 E-value=44 Score=35.88 Aligned_cols=67 Identities=25% Similarity=0.313 Sum_probs=41.5
Q ss_pred HHHHHHhCCCCCCCCcceeecCCCCCcccccc---cceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCccc
Q 002775 245 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENY---GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (882)
Q Consensus 245 ~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~~---gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (882)
.-....-|++ +-+++.++..|...+-++... |.|...+. ++ +. .+...+..+++||++|.=-++.+.
T Consensus 106 ~~~a~~~~~~-~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll-~~-----l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 106 AELARQAGIP-HMPEVYILETPQPNAFALGGGPKNGRVVVTTG-LL-DL-----LNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHHHCCCC-CCCeeEEecCCCccceecCCCCCCeeEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHhcccHHH
Confidence 3334445533 246677776665545555553 67776666 33 21 133468899999999998777655
No 45
>PRK02870 heat shock protein HtpX; Provisional
Probab=39.66 E-value=60 Score=35.52 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc---cccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHH
Q 002775 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (882)
Q Consensus 241 ~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (882)
.++++-+....|+|+ .|++-++-.+...+-++. .-+.|.+.+. ++ +. -+...+..++|||++|-
T Consensus 118 ~~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL-~~-----L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 118 YNVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LL-EK-----LDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hh-hh-----CCHHHHHHHHHHHHHHH
Confidence 344455555567543 356655543332222332 2345555554 33 11 13456889999999996
No 46
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.54 E-value=2.8e+02 Score=31.64 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=46.1
Q ss_pred EecCCCCeEEEEEEEEEEEECC--CCEEEEEecC---ceeeEEEEeeccCCCCcc--ccceeEEEecCCeEEEEEeCCcc
Q 002775 24 TPDLTSCKFGGSVAIDVDVVGD--TKFIVLNAAD---LTINNRSVSFTNKVSSKA--LEPTKVELVEADEILVLEFAETL 96 (882)
Q Consensus 24 ~~d~~~~~~~G~v~I~~~~~~~--~~~i~L~~~~---l~i~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~l 96 (882)
++|+.+....=++.|++++..+ .+...+-... -.+..+.+.......... .....+.-....+...|+|++||
T Consensus 10 ~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~pl 89 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVNSGSEIKYYEITLPKPL 89 (432)
T ss_pred EEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCccccccccccccccCCCCcceEEEECCCCC
Confidence 4566666666667777776543 4444443322 123333333221111000 11122222223456999999999
Q ss_pred CCc-eEEEEEEEEe
Q 002775 97 PTG-MGVLAIGFEG 109 (882)
Q Consensus 97 ~~g-~~~l~i~y~g 109 (882)
.|| +.+|.++|.-
T Consensus 90 ~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 90 APGEKVTLTVEYVL 103 (432)
T ss_pred CCCCEEEEEEEEEe
Confidence 999 8888888763
No 47
>PRK03982 heat shock protein HtpX; Provisional
Probab=38.19 E-value=62 Score=34.64 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc---cccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcC
Q 002775 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (882)
Q Consensus 240 ~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (882)
..+.++-+.+..|+| .|++-++-.+...+-+.. .-|.|...+. ++ +. -+...+..++|||++|-=-++
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~~-----l~~~El~AVlAHElgHi~~~h 140 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIVPTQTPNAFATGRDPKHAVVAVTEG-IL-NL-----LNEDELEGVIAHELTHIKNRD 140 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEEeCCCcceEEeccCCCCeEEEeehH-HH-hh-----CCHHHHHHHHHHHHHHHHcCC
Confidence 445556666667754 456655532221111111 1234444444 22 11 134568999999999976554
No 48
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=38.09 E-value=43 Score=28.01 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCC--cccccccceeeecccccccCCC---CcHHHHHHHHHHHHHHHHHHH
Q 002775 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAA--GAMENYGLVTYRETALLYDDQH---SAAANKQRVATVVAHELAHQW 313 (882)
Q Consensus 242 ~~l~~~e~~~g~~yP~~k~d~v~~p~~~~--gamE~~gli~~~e~~ll~~~~~---~~~~~~~~~~~~iaHElaHqW 313 (882)
.+...+|..||.+ |.+..+-.-|.-.. .+|. .--++.... +.+.+.. ++. .-..+++||++|-+
T Consensus 5 ~~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~-A~A~T~G~~-I~f~~g~~~~~s~----~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 5 SIRSRLERAFGAD--LSDVRVHTGPAASRAAAALG-ARAFTVGND-IYFAPGKYNPDSP----EGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHHhCCC--ccceEEEeCCchhhhhhccC-CeEEEECCE-EEEcCCCcCCCCC----CcchhHhHHHHHHH
Confidence 3456789999954 66665544332111 1111 112333333 3332221 111 13468999999965
No 49
>PRK04897 heat shock protein HtpX; Provisional
Probab=37.94 E-value=67 Score=34.55 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc---cccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcC
Q 002775 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (882)
Q Consensus 240 ~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (882)
..+.++-+.+..|+ |.|++-++-.+...+-+.. +-+.|.+... ++-. -+.+.+..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll~~------l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LLAI------MNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehH-HHhh------CCHHHHHHHHHHHHHHHhcCC
Confidence 45666666777775 5677776644332221211 2234554443 2211 123568899999999965444
No 50
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=37.71 E-value=92 Score=30.94 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q 002775 300 RVATVVAHELAHQW 313 (882)
Q Consensus 300 ~~~~~iaHElaHqW 313 (882)
..+.++||||+|+.
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 46789999999996
No 51
>PRK05457 heat shock protein HtpX; Provisional
Probab=37.61 E-value=63 Score=34.49 Aligned_cols=69 Identities=28% Similarity=0.452 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCC---cccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcC
Q 002775 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAA---GAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (882)
Q Consensus 240 ~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~---gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (882)
..+.++-+.+..|+ |.|++-++-.+...+ |.-.+-+.|.+... ++- . -+.+.+..++|||++|.=-|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~-~-----L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LLQ-N-----MSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hhh-h-----CCHHHHHHHHHHHHHHHHcCC
Confidence 34556666777775 577877665433222 21222234555543 221 1 123468899999999986665
Q ss_pred c
Q 002775 317 L 317 (882)
Q Consensus 317 l 317 (882)
.
T Consensus 150 ~ 150 (284)
T PRK05457 150 M 150 (284)
T ss_pred H
Confidence 3
No 52
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=37.28 E-value=1.8e+02 Score=32.17 Aligned_cols=117 Identities=16% Similarity=0.246 Sum_probs=72.6
Q ss_pred hhhHHHHHHHHHHHH-HhccCCHHHHHHHHHhccCCCcH--------HHHHHH----HHHHHHHHHHHhccChHHHH-HH
Q 002775 572 ETDRFGILDDHFALC-MARQQTLTSLLTLMASYSEETEY--------TVLSNL----ITISYKIGRIAADARPELLD-YL 637 (882)
Q Consensus 572 ~~~ra~li~D~~~la-~~g~l~~~~~l~l~~~l~~E~~~--------~~w~~~----~~~l~~l~~~~~~~~~~~~~-~~ 637 (882)
+.+|.++|+|+..-. .+.-++|..=|.+++.-++|-.+ ..|... ...|..|.+.+... |+..+ .+
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~-p~l~nLl~ 390 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDEN-PELANLLL 390 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcC-cchhhhhc
Confidence 688999999996544 45567899999988877766443 344431 11234444444332 22222 12
Q ss_pred HHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCCCCCCcchhh
Q 002775 638 KQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRK 709 (882)
Q Consensus 638 ~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~-~c~~~A~~~f~~~~~~~~~~~i~~dlr~ 709 (882)
..|..+++.. ...-+|. ++..|...|.+ +|...|...|+.|.. ..+|++|.+
T Consensus 391 ~pyF~~~~~~---------------~~~~~R~-vV~~a~~~giP~P~~ssalsy~Dsyr~----~~lpaNLiQ 443 (473)
T COG0362 391 APYFKSILEE---------------YQQSLRR-VVAYAVEAGIPVPAFSSALSYYDSYRT----ARLPANLIQ 443 (473)
T ss_pred CHHHHHHHHH---------------HHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHhhh----ccccHHHHH
Confidence 3333333331 1233444 55677889987 999999999999964 458888876
No 53
>PRK09687 putative lyase; Provisional
Probab=37.02 E-value=5.4e+02 Score=27.34 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHH
Q 002775 666 LLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTR 745 (882)
Q Consensus 666 ~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~v~~g~~~~~~~l~~~y~~s~~~~ek~~ 745 (882)
..|..+...++..+++..+.... ..+++ -++++|...-.++.. +..++....+.|..... ..+..-|..
T Consensus 143 ~VR~~a~~aLg~~~~~~ai~~L~----~~L~d-----~~~~VR~~A~~aLg~-~~~~~~~~~~~L~~~L~-D~~~~VR~~ 211 (280)
T PRK09687 143 NVRFAVAFALSVINDEAAIPLLI----NLLKD-----PNGDVRNWAAFALNS-NKYDNPDIREAFVAMLQ-DKNEEIRIE 211 (280)
T ss_pred HHHHHHHHHHhccCCHHHHHHHH----HHhcC-----CCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhc-CCChHHHHH
Confidence 45666666666777665554333 33333 134666533222211 12334555556666553 345566777
Q ss_pred HHHHhCCCCCHHHHHHHHHHh
Q 002775 746 ILSSLASCPDVNIVLEVLNFL 766 (882)
Q Consensus 746 ll~aL~ct~d~~ll~~~L~~~ 766 (882)
.+.|||..+++..+..+++.+
T Consensus 212 A~~aLg~~~~~~av~~Li~~L 232 (280)
T PRK09687 212 AIIGLALRKDKRVLSVLIKEL 232 (280)
T ss_pred HHHHHHccCChhHHHHHHHHH
Confidence 788888777777777666664
No 54
>PRK01345 heat shock protein HtpX; Provisional
Probab=36.98 E-value=75 Score=34.54 Aligned_cols=69 Identities=28% Similarity=0.263 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCccccc---ccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcC
Q 002775 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (882)
Q Consensus 240 ~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (882)
..++++-+.+..|+| .|++-++-.+...+-+... -+.|.+.+. |+-. .+...+..++|||++|.=-++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~~------L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQR------LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 446667777778865 4666555433322222221 124554444 3321 123468999999999986555
Q ss_pred c
Q 002775 317 L 317 (882)
Q Consensus 317 l 317 (882)
.
T Consensus 140 ~ 140 (317)
T PRK01345 140 T 140 (317)
T ss_pred H
Confidence 3
No 55
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=35.94 E-value=1e+02 Score=28.28 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=34.9
Q ss_pred CEEEEEecC---ceeeEEEEeeccCCCCccccceeEEEecCC-eEEEEEeCCccCCceEEEEEEEEe
Q 002775 47 KFIVLNAAD---LTINNRSVSFTNKVSSKALEPTKVELVEAD-EILVLEFAETLPTGMGVLAIGFEG 109 (882)
Q Consensus 47 ~~i~L~~~~---l~i~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~l~~g~~~l~i~y~g 109 (882)
..|.|+..+ ..+..+.+.+.++ ..+.......+..+ ..++|.++++|++|.|++.-+..+
T Consensus 47 ~~i~L~Fse~ve~~fs~~~l~~~d~---~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 47 AAITLEFSEGVEPGFSGAKLTGPDG---EEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred eeEEEecCCccCCCcceeEEECCCC---CccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 356666542 3335566654322 12222233333333 459999999999999998776654
No 56
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=35.83 E-value=23 Score=34.63 Aligned_cols=13 Identities=46% Similarity=0.527 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 002775 301 VATVVAHELAHQW 313 (882)
Q Consensus 301 ~~~~iaHElaHqW 313 (882)
-..++||||+||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 4567999999998
No 57
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=35.71 E-value=87 Score=32.02 Aligned_cols=116 Identities=10% Similarity=0.050 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhcC
Q 002775 574 DRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLG 653 (882)
Q Consensus 574 ~ra~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg 653 (882)
-|.+++.=...+...|.++...+.+++..|-.|-+..|-..+....+.+-+.++..+.. ...+. +|+-..+..+.
T Consensus 4 kr~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~~-~~~~l----dLlP~~Ls~L~ 78 (223)
T PF14675_consen 4 KRFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDNK-NGKWL----DLLPKCLSALS 78 (223)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS---S--STTT----THHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCcc-cchHH----HHHHHHHHHHh
Confidence 47778888888899999999999999999999999998888887777766665532111 11222 23333333331
Q ss_pred Cc---cCCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 002775 654 WD---SKPGESHLDALLRGEIFTALALLG-HKETLNEASKRFHAF 694 (882)
Q Consensus 654 ~~---~~~~~~~~~~~lr~~il~~ac~~g-~~~c~~~A~~~f~~~ 694 (882)
-. ...++...-...+..+++-.|... ++.|+-.-..+|++.
T Consensus 79 ~~~~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd~ 123 (223)
T PF14675_consen 79 ASESINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRDV 123 (223)
T ss_dssp T-S--SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGGS
T ss_pred cCcccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhcC
Confidence 11 111222345788899999999876 345666666666543
No 58
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=35.26 E-value=25 Score=30.71 Aligned_cols=14 Identities=43% Similarity=0.854 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 002775 300 RVATVVAHELAHQW 313 (882)
Q Consensus 300 ~~~~~iaHElaHqW 313 (882)
....+++||++|-|
T Consensus 78 GC~~TL~HEL~H~W 91 (141)
T PHA02456 78 GCRDTLAHELNHAW 91 (141)
T ss_pred chHHHHHHHHHHHH
Confidence 45678999999999
No 59
>PRK03072 heat shock protein HtpX; Provisional
Probab=34.47 E-value=78 Score=33.87 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc-cc--cceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 002775 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-NY--GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (882)
Q Consensus 239 ~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE-~~--gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (882)
...+.++-+.+..|+ |.|++-++-.+...+-+.. ++ +.+..... ++ +. .+.+.+..++|||++|-=-|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-IL-QI-----LNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HH-Hh-----CCHHHHHHHHHHHHHHHhcC
Confidence 345666777777885 5677766554432211111 11 12333333 33 11 13356899999999996544
Q ss_pred C
Q 002775 316 N 316 (882)
Q Consensus 316 n 316 (882)
+
T Consensus 142 d 142 (288)
T PRK03072 142 D 142 (288)
T ss_pred C
Confidence 4
No 60
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=33.85 E-value=60 Score=30.53 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHH
Q 002775 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (882)
Q Consensus 239 ~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (882)
...+.++-.+..|+-+||.++...=.=-. .+|+ -.+..+.+=++|..--......+..+|.|||||-
T Consensus 6 ~L~~~~~~as~~~~r~~~~p~~~~n~Rg~-taG~------ayL~~~~I~lNP~ll~en~~~f~~~vV~HELaHl 72 (156)
T COG3091 6 KLQQCVEQASLKFFRKFFRPKASYNQRGR-TAGG------AYLLKSEIRLNPKLLEENGEDFIEQVVPHELAHL 72 (156)
T ss_pred HHHHHHHHHHHHhcCCCCCcceehhhhhh-hcch------hhccccccccCHHHHHHccHHHHHHHHHHHHHHH
Confidence 34455555566665589988765321100 1111 1111111222222111112335778999999974
No 61
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=33.51 E-value=42 Score=33.78 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=19.8
Q ss_pred cccCCCCcHHHHHHHHHHHHHHHHHHHhcCccc
Q 002775 287 LYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (882)
Q Consensus 287 l~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (882)
+|++........-.+-.+|||||.|-.-...+.
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~~ 54 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGIN 54 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 445444444555567889999999976443333
No 62
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.67 E-value=1.7e+02 Score=25.98 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHHhhc--------------CCCchHHHHHHHHHHHHH
Q 002775 790 AWKWLKDNWDHISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSS--------------RCKPYIARTLRQSIERVQ 855 (882)
Q Consensus 790 ~~~fl~~n~~~i~~~~~~~~~l~~~i~~~~~~~~t~~~l~~~~~Ff~~--------------~~~~~~~~~~~~~le~i~ 855 (882)
.|+|+++||.-|..-++.. .+-+..-+.+.+.+.++++++++=+.. -|+..--..++-.+..++
T Consensus 1 ~~~~~~~~w~ii~a~~~~~--~~~~~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 1 MWEFIKKNWGIIWAVFGIA--GGIFWLWLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELR 78 (106)
T ss_pred ChHHHHhCcHHHHHHHHHH--HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3899999999987766421 223333356677787777777443332 233233345555666666
Q ss_pred HHHHHHHHhc
Q 002775 856 INAKWVESIR 865 (882)
Q Consensus 856 ~ni~W~~~~~ 865 (882)
..++=++...
T Consensus 79 G~~~~l~~~l 88 (106)
T PF10805_consen 79 GELKELSARL 88 (106)
T ss_pred hHHHHHHHHH
Confidence 5555444433
No 63
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=95 Score=36.92 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=81.8
Q ss_pred CCCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCCCCCCCcchhh-hhheeeeeecccCCHHHHHHHHHHHHc
Q 002775 659 GESHLDALLRGEIFTALAL-LGHKETLNEASKRFHAFLADRTTPLLPPDIRK-AAYVAVMQKVSASDRSGYESLLRVYRE 736 (882)
Q Consensus 659 ~~~~~~~~lr~~il~~ac~-~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~-~vy~~~~~~v~~g~~~~~~~l~~~y~~ 736 (882)
+|+.-.+.+|.+.+..||- +|.++ .|..+.++...+ -+|-+|. -+|...+.-+-.|+......|+.---+
T Consensus 494 ~ETQHeki~RGl~vGiaL~~ygrqe---~Ad~lI~el~~d-----kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs 565 (929)
T KOG2062|consen 494 QETQHEKIIRGLAVGIALVVYGRQE---DADPLIKELLRD-----KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS 565 (929)
T ss_pred hhhhHHHHHHHHHHhHHHHHhhhhh---hhHHHHHHHhcC-----CchhhhhhhHHHHHHHHhccCchhhHHHhhccccc
Confidence 4666678999999999886 45543 555566666543 2566774 455544444447788888888887666
Q ss_pred CCCHHHHHHHHHHhC--CCCCHHHHHHHHHHhccC---cCCcccceeeee--eccccHHHHHHHH
Q 002775 737 TDLSQEKTRILSSLA--SCPDVNIVLEVLNFLLSS---EVRSQDAVYGLA--VSIEGRETAWKWL 794 (882)
Q Consensus 737 s~~~~ek~~ll~aL~--ct~d~~ll~~~L~~~l~~---~i~~qd~~~~~~--v~~~g~~~~~~fl 794 (882)
..+..-|+...-||| |++||+.+-++++++-.. .||---. .++. .++.|...|.+-+
T Consensus 566 D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA-~ALGIaCAGtG~~eAi~lL 629 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAA-MALGIACAGTGLKEAINLL 629 (929)
T ss_pred ccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHH-HHHhhhhcCCCcHHHHHHH
Confidence 666677888888887 889999999988876432 3443221 1122 3444666665543
No 64
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=31.95 E-value=91 Score=25.40 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC
Q 002775 401 GASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE 448 (882)
Q Consensus 401 ga~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~d~~~~l~~~sg~ 448 (882)
=+.++.+|...++.+.+ .-|..++++++-+-++-++|.+.+....|.
T Consensus 11 F~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 36789999999998885 456677777888889999999999998884
No 65
>PRK02391 heat shock protein HtpX; Provisional
Probab=31.17 E-value=1e+02 Score=33.08 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc---cccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcC
Q 002775 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (882)
Q Consensus 240 ~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (882)
..+.++-+.+..|+| .|++-++-.+...+-+.. .-+.|.+.+. ++- . -+...+..++|||++|---++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~-~-----L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LMR-R-----LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HHh-h-----CCHHHHHHHHHHHHHHHHcCC
Confidence 345555666777764 567666654432222221 2234444443 221 1 123468899999999976655
Q ss_pred c
Q 002775 317 L 317 (882)
Q Consensus 317 l 317 (882)
.
T Consensus 149 i 149 (296)
T PRK02391 149 V 149 (296)
T ss_pred H
Confidence 3
No 66
>PRK10301 hypothetical protein; Provisional
Probab=30.95 E-value=2.6e+02 Score=25.60 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=18.7
Q ss_pred CCeEEEEEeCCccCCceEEEEEEEEe
Q 002775 84 ADEILVLEFAETLPTGMGVLAIGFEG 109 (882)
Q Consensus 84 ~~~~l~i~~~~~l~~g~~~l~i~y~g 109 (882)
....+.+.++.+|++|.|+++-+-.+
T Consensus 84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 84 DQKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred CCcEEEEECCCCCCCccEEEEEEEEe
Confidence 34567888888899999977644433
No 67
>PRK01265 heat shock protein HtpX; Provisional
Probab=30.41 E-value=98 Score=33.67 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCCccccc---ccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 002775 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (882)
Q Consensus 241 ~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (882)
.+.++-+.+..|+ |.|++-++-.+...+-+... -+-|...+. ++ +. -+...+..++|||++|-=-+
T Consensus 86 ~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 86 YSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAGKRIAITLP-LL-KI-----LNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCCCEEEEehH-HH-hh-----CCHHHHHHHHHHHHHHHHcc
Confidence 4555666677775 56676666443321112111 134444444 22 11 13456889999999995433
No 68
>PF13205 Big_5: Bacterial Ig-like domain
Probab=27.67 E-value=3.8e+02 Score=23.17 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.1
Q ss_pred cCCeEEEEEeCCccCCc-eEEEEEEEE
Q 002775 83 EADEILVLEFAETLPTG-MGVLAIGFE 108 (882)
Q Consensus 83 ~~~~~l~i~~~~~l~~g-~~~l~i~y~ 108 (882)
..+..+.|.+.++|.+| .|+|.|.-.
T Consensus 59 ~~~~~~~i~p~~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 59 WDGNTLTITPSQPLKPGTTYTVTIDSG 85 (107)
T ss_pred ccCCEEEEEECCcCCCCCEEEEEECCC
Confidence 56689999999999999 999998544
No 69
>PRK15245 type III effector phosphothreonine lyase; Provisional
Probab=27.54 E-value=1.8e+02 Score=28.84 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=65.1
Q ss_pred ccCCCCCceEE---EEEEEeC-----CCCeEeecCCccceeecCCeEEEEEEcCCCccceEEEEEEecceeeeccccCCe
Q 002775 148 CWDEPACKATF---KITLDVP-----SELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGI 219 (882)
Q Consensus 148 c~DeP~~ka~f---~l~i~~p-----~~~~a~sn~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~ 219 (882)
|-++|..|..| +++|.+. ..+.+++.-......+-+.|+++.-..-+ ... ...-|.
T Consensus 90 ~R~~~q~kGefaGDK~HiSV~~~qv~qAF~als~lLfSeDSPiDKWKVTDM~rv~---------------qqs-RV~~GA 153 (241)
T PRK15245 90 RRESPQSKGDFAGDKFHISVARDQVPQAFQALSGLLFSEDSPVDKWKVTDMERVS---------------QQS-RVGLGA 153 (241)
T ss_pred cccCccccccccCceEEEEecHHHHHHHHHHhhhhhcCCCCCcceeeeccccccC---------------ccc-hhcccc
Confidence 44667666554 4555543 45667765554443443445554322211 111 223488
Q ss_pred EEEEEEcCCchh--hHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccceeeecc
Q 002775 220 KVRVYCQVGKAN--QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRET 284 (882)
Q Consensus 220 ~v~v~~~~~~~~--~~~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~ 284 (882)
.+++|..|+.++ .....|..+.+.|+.+|..++.. - +.==..|.- .-.-|||..+.||..
T Consensus 154 QfTLYvKpd~edsqYsa~~l~k~r~Fie~lE~~L~~~-g---i~pG~~P~S-DV~pe~W~y~SYRNE 215 (241)
T PRK15245 154 QFTLYVKPDQENSQYSASFLHKTRQFIECLESRLSEN-G---VISGQCPES-DVHPENWKYLSYRNE 215 (241)
T ss_pred eEEEEecCccccccCCHHHHHHHHHHHHHHHHHHHHc-C---CCCCCCCcc-ccCccccceeeehhh
Confidence 999999998753 23455778888999999888611 0 000011221 124589999999976
No 70
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=27.39 E-value=1.7e+02 Score=27.76 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=23.8
Q ss_pred eEEEEEEcCCch---hhHHHHHHHHHHHHHHHHHHhCCC
Q 002775 219 IKVRVYCQVGKA---NQGKFALNVAVKTLELYKEYFAVP 254 (882)
Q Consensus 219 ~~v~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~~g~~ 254 (882)
.++++|..+... .......+.+.+++..+++..++.
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~ 40 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLK 40 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeE
Confidence 467777776542 234456778888888888876533
No 71
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=26.73 E-value=2.1e+02 Score=31.60 Aligned_cols=83 Identities=20% Similarity=0.201 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCCCCCCcceeecCCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHH-HH---------
Q 002775 243 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELA-HQ--------- 312 (882)
Q Consensus 243 ~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEla-Hq--------- 312 (882)
+=++..+|++ .. --++.+...++..++||-.-+-|.++.+.. .....+...+.||+. |.
T Consensus 118 ~~~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~~---------fs~~~l~~L~~HEigvH~lt~~Ng~~Q 186 (349)
T PF08014_consen 118 LQERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNAM---------FSERDLEALLHHEIGVHLLTTLNGRAQ 186 (349)
T ss_pred HHHHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCCC---------cCHHHHHHHHHHhhhhhhccccccccC
Confidence 3344556666 23 224555566778777776555555555422 134468889999994 52
Q ss_pred ---HhcCccccccchhhhhhhhHHHHHHHHH
Q 002775 313 ---WFGNLVTMEWWTHLWLNEGFATWVSYLA 340 (882)
Q Consensus 313 ---WfGnlVt~~~w~d~WL~EGfa~y~~~~~ 340 (882)
|++...-+.. =..||+|.+.|++.
T Consensus 187 Pl~~l~~Glp~~~----~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 187 PLKILSLGLPGYT----PTQEGLAVLSEYLS 213 (349)
T ss_pred CcHHhCCCCCCCC----CCchHHHHHHHHHh
Confidence 3332222211 13799999999764
No 72
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=26.70 E-value=43 Score=35.59 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhcCc
Q 002775 298 KQRVATVVAHELAHQWFGNL 317 (882)
Q Consensus 298 ~~~~~~~iaHElaHqWfGnl 317 (882)
...++.+++||+|||=-++.
T Consensus 272 ddglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 272 DDGLATVLGHEIAHAVARHA 291 (424)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999977653
No 73
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=26.69 E-value=9.6e+02 Score=29.18 Aligned_cols=135 Identities=7% Similarity=0.046 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhh--hhheeeeeecccCCHHHHHHHHHHHHcC---CCHH
Q 002775 667 LRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRK--AAYVAVMQKVSASDRSGYESLLRVYRET---DLSQ 741 (882)
Q Consensus 667 lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~v~~g~~~~~~~l~~~y~~s---~~~~ 741 (882)
....++...|+.|. ++.|.+.|++..+ +|... ++...++ +.|..++-..++++..+. .+..
T Consensus 362 ~~~~Li~~y~k~G~---~~~A~~vf~~m~~--------~d~~t~n~lI~~y~---~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 362 ANTALVDLYSKWGR---MEDARNVFDRMPR--------KNLISWNALIAGYG---NHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred ehHHHHHHHHHCCC---HHHHHHHHHhCCC--------CCeeeHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 33456666677665 6677888876532 12221 1112222 355555544455544432 2333
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhccC-cCCccc-ceeeee--eccc-cHHHHHHHHHHHHHHHHHHhCC-CcchHHHH
Q 002775 742 EKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQD-AVYGLA--VSIE-GRETAWKWLKDNWDHISKTWGS-GFLITRFI 815 (882)
Q Consensus 742 ek~~ll~aL~ct~d~~ll~~~L~~~l~~-~i~~qd-~~~~~~--v~~~-g~~~~~~fl~~n~~~i~~~~~~-~~~l~~~i 815 (882)
--..+|.|++.+.+.+...++++..... .+.+.- ....+. ..+. -.+-|.+++.+- .+.. ......++
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~------~~~p~~~~~~~Ll 501 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA------PFKPTVNMWAALL 501 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC------CCCCCHHHHHHHH
Confidence 4556777777777777777777766542 344432 222232 3444 345555554321 1111 23466677
Q ss_pred HHhhcc
Q 002775 816 SSIVSP 821 (882)
Q Consensus 816 ~~~~~~ 821 (882)
.++...
T Consensus 502 ~a~~~~ 507 (697)
T PLN03081 502 TACRIH 507 (697)
T ss_pred HHHHHc
Confidence 666443
No 74
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=26.27 E-value=1.8e+02 Score=26.78 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=17.0
Q ss_pred cCCeEEEEEeCCccCCceEEEEEEE
Q 002775 83 EADEILVLEFAETLPTGMGVLAIGF 107 (882)
Q Consensus 83 ~~~~~l~i~~~~~l~~g~~~l~i~y 107 (882)
.....+.+.++.+|.+|.|.+.+..
T Consensus 83 ~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 4445677788888999999999888
No 75
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=26.17 E-value=65 Score=26.88 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=41.6
Q ss_pred CcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC
Q 002775 704 PPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS 769 (882)
Q Consensus 704 ~~dlr~~vy~~~~~~v~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~ 769 (882)
++..|..+..+++ +.++.+....+.+.. +..++.-|...+.+||+..++..+..+...+.++
T Consensus 13 ~~~vr~~a~~~L~---~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 13 DPQVRAEAARALG---ELGDPEAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLLQDD 74 (88)
T ss_dssp SHHHHHHHHHHHH---CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHH---HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 4566654433333 345666667777766 5677888888999999888888777777765543
No 76
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=25.60 E-value=1.6e+02 Score=29.89 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q 002775 301 VATVVAHELAHQW 313 (882)
Q Consensus 301 ~~~~iaHElaHqW 313 (882)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4689999999985
No 77
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=24.30 E-value=2.5e+02 Score=21.18 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHh
Q 002775 823 ASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKEL 877 (882)
Q Consensus 823 ~t~~~l~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~wl~~~ 877 (882)
-|.+++..|+++|..++.++... ++.|...+ ......|..|+.+.
T Consensus 7 ~t~~q~~~L~~~f~~~~~p~~~~-----~~~la~~l-----~l~~~~V~~WF~nr 51 (57)
T PF00046_consen 7 FTKEQLKVLEEYFQENPYPSKEE-----REELAKEL-----GLTERQVKNWFQNR 51 (57)
T ss_dssp SSHHHHHHHHHHHHHSSSCHHHH-----HHHHHHHH-----TSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccccccc-----cccccccc-----cccccccccCHHHh
Confidence 46899999999999877664332 11222222 22223388898765
No 78
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=23.04 E-value=48 Score=28.65 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=21.2
Q ss_pred HHHhhCHHHHHHHHHHHHHHhccCCCChH
Q 002775 408 LQNYLGAECFQRSLASYIKKYACSNAKTE 436 (882)
Q Consensus 408 L~~~lG~~~F~~~l~~yl~~~~~~~~~~~ 436 (882)
++..||++.|....+.|+.++.-.+.+..
T Consensus 55 ~~~llG~~~f~~la~~y~~~~p~~s~~l~ 83 (94)
T PF09836_consen 55 VRALLGEEFFDALARAYIRAHPSRSPDLN 83 (94)
T ss_dssp GGGGS-HHHHHHHHHHHHHSGGGG-S-GG
T ss_pred HHHHhCHHHHHHHHHHHHHhCCCCCCcHH
Confidence 35678999999999999999876665543
No 79
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=22.96 E-value=1.9e+02 Score=31.11 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=40.3
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHhh
Q 002775 829 REVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNE--------GHLAEAVKELA 878 (882)
Q Consensus 829 ~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~--------~~i~~wl~~~~ 878 (882)
.++++|.+........+.+++-++.|+.|..|+++.... ..|.+|.++..
T Consensus 228 ~~LKr~~K~~k~~~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~~ 285 (299)
T PF03715_consen 228 VQLKRFLKSCKNAKFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESELK 285 (299)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhcc
Confidence 468888887766788899999999999999999985544 44888887653
No 80
>PRK09687 putative lyase; Provisional
Probab=22.87 E-value=9.3e+02 Score=25.54 Aligned_cols=166 Identities=12% Similarity=0.131 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHH
Q 002775 665 ALLRGEIFTALALLGHKET--LNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQE 742 (882)
Q Consensus 665 ~~lr~~il~~ac~~g~~~c--~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~v~~g~~~~~~~l~~~y~~s~~~~e 742 (882)
...|...+..+...+...+ ...+.......+.+ -++..|..+-.++. +.++....+.|..... ..++.-
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D-----~~~~VR~~a~~aLg---~~~~~~ai~~L~~~L~-d~~~~V 175 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD-----KSTNVRFAVAFALS---VINDEAAIPLLINLLK-DPNGDV 175 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHhhC-----CCHHHHHHHHHHHh---ccCCHHHHHHHHHHhc-CCCHHH
Confidence 3556555555555543322 12233344444433 14567764433332 3567777888888775 455678
Q ss_pred HHHHHHHhCCC--CCHHHHHHHHHHhccC--cCCcccceeeee-eccccHHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Q 002775 743 KTRILSSLASC--PDVNIVLEVLNFLLSS--EVRSQDAVYGLA-VSIEGRETAWKWLKDNWDHISKTWGSGFLITRFISS 817 (882)
Q Consensus 743 k~~ll~aL~ct--~d~~ll~~~L~~~l~~--~i~~qd~~~~~~-v~~~g~~~~~~fl~~n~~~i~~~~~~~~~l~~~i~~ 817 (882)
|.....|||.. .+|..+.-++..+-+. .||. ..+. ++.-+...+...|.+ ...++......+.+
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~----~A~~aLg~~~~~~av~~Li~-------~L~~~~~~~~a~~A 244 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRI----EAIIGLALRKDKRVLSVLIK-------ELKKGTVGDLIIEA 244 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHH----HHHHHHHccCChhHHHHHHH-------HHcCCchHHHHHHH
Confidence 99999999954 4777665555544322 1221 1111 222233444444333 23233222344444
Q ss_pred hhccCCCHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 002775 818 IVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERV 854 (882)
Q Consensus 818 ~~~~~~t~~~l~~~~~Ff~~~~~~~~~~~~~~~le~i 854 (882)
.+.+-+++-+.-++...+..+.+ +...+++|.+
T Consensus 245 -Lg~ig~~~a~p~L~~l~~~~~d~---~v~~~a~~a~ 277 (280)
T PRK09687 245 -AGELGDKTLLPVLDTLLYKFDDN---EIITKAIDKL 277 (280)
T ss_pred -HHhcCCHhHHHHHHHHHhhCCCh---hHHHHHHHHH
Confidence 46677888888888877655533 3334444433
No 81
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=22.81 E-value=94 Score=31.05 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q 002775 299 QRVATVVAHELAHQ 312 (882)
Q Consensus 299 ~~~~~~iaHElaHq 312 (882)
...+.++||||+|.
T Consensus 129 ~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 129 LSFAVIIAHELGHN 142 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 35788999999995
No 82
>PLN03218 maturation of RBCL 1; Provisional
Probab=22.65 E-value=1.7e+03 Score=28.68 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=12.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHh
Q 002775 742 EKTRILSSLASCPDVNIVLEVLNFL 766 (882)
Q Consensus 742 ek~~ll~aL~ct~d~~ll~~~L~~~ 766 (882)
--..++.+++...+.+...++++.+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3444555555555555555555444
No 83
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=22.48 E-value=3.4e+02 Score=24.00 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=20.9
Q ss_pred cCCeEEEEEeCCccCCceEEEEE--EEEe
Q 002775 83 EADEILVLEFAETLPTGMGVLAI--GFEG 109 (882)
Q Consensus 83 ~~~~~l~i~~~~~l~~g~~~l~i--~y~g 109 (882)
.....|.+.+|..|..|+|.|.| +|.+
T Consensus 61 N~ps~l~~~lPa~L~~G~Y~l~V~Tq~~~ 89 (102)
T PF14734_consen 61 NKPSRLIFILPADLAAGEYTLEVRTQYSG 89 (102)
T ss_pred CCCcEEEEECcCccCceEEEEEEEEEecC
Confidence 34467888999999999998877 4554
No 84
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=22.38 E-value=1.6e+03 Score=28.09 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=73.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhc-CCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 002775 671 IFTALALLGHKETLNEASKRFHAFLA-DRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSS 749 (882)
Q Consensus 671 il~~ac~~g~~~c~~~A~~~f~~~~~-~~~~~~i~~dlr~~vy~~~~~~v~~g~~~~~~~l~~~y~~s~~~~ek~~ll~a 749 (882)
++..+..-.++.|+--+-.+++.... +..-..--.|+-+.++|+.=...+.--.+... + +...-+..+..+
T Consensus 174 f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~F~edlFeV~~CYFPI~Fkppk~D~~~-I-------~reDL~~sLr~a 245 (1030)
T KOG1967|consen 174 FCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGPFTEDLFEVIACYFPITFKPPKDDTIT-I-------RREDLKASLRSA 245 (1030)
T ss_pred HHHHhcCCCCchhhHHHHHHHHHHhhccCCCCccHHHHHHHhheeeeeeccCCCCCccc-c-------cHHHHHHHHHHH
Confidence 33333344577888888888887764 21112234577788888764433332222111 1 123456778888
Q ss_pred hCCCCC--HHHHHHHHHHhccCcC-Ccccceeeee-eccc-cHHHHHHHHHHHHHHHHHHhCC
Q 002775 750 LASCPD--VNIVLEVLNFLLSSEV-RSQDAVYGLA-VSIE-GRETAWKWLKDNWDHISKTWGS 807 (882)
Q Consensus 750 L~ct~d--~~ll~~~L~~~l~~~i-~~qd~~~~~~-v~~~-g~~~~~~fl~~n~~~i~~~~~~ 807 (882)
|+.++- |.++--+++.+-+... -+-|....+. .... |.+....+...+|..|+..+++
T Consensus 246 l~stP~Fa~~~lp~LlEKL~as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik~ei~~ 308 (1030)
T KOG1967|consen 246 LVSTPSFAPFALPLLLEKLNASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIKPEIGQ 308 (1030)
T ss_pred HhcCccchhhHHHHHHHHhccccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHHHHHcc
Confidence 887764 4444445554433322 2235544444 3333 7666677779999999988764
No 85
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=21.76 E-value=3e+02 Score=26.91 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccc
Q 002775 297 NKQRVATVVAHELAHQWFGNLVTMEW 322 (882)
Q Consensus 297 ~~~~~~~~iaHElaHqWfGnlVt~~~ 322 (882)
++..+..+++|||.|.|=.-...++|
T Consensus 67 ~~~~l~~~l~HELIHayD~cr~kvD~ 92 (173)
T PF09768_consen 67 SQGHLEDTLTHELIHAYDHCRAKVDW 92 (173)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 34568899999999998444444444
No 86
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=21.16 E-value=3.8e+02 Score=29.24 Aligned_cols=95 Identities=20% Similarity=0.252 Sum_probs=59.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 002775 671 IFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSL 750 (882)
Q Consensus 671 il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~v~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL 750 (882)
|-..+++.+..+-.+...+.+. .+|.....+. |..+..+. -+++--+.+.++...+.+......+++||
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~---------~lP~~vl~aL-~~~LEh~~-l~~~l~~~l~~~~~~~~d~~~~~a~lRAl 240 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALP---------HLPPEVLYAL-CGCLEHQP-LPDKLAEALLERLEQAPDLELLSALLRAL 240 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHh---------hCChHHHHHH-HHHhcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5556666666543222222221 1444444322 33333332 35667888999988888888999999999
Q ss_pred CCCCCHHHHHHHHHHhccC-cCCcccc
Q 002775 751 ASCPDVNIVLEVLNFLLSS-EVRSQDA 776 (882)
Q Consensus 751 ~ct~d~~ll~~~L~~~l~~-~i~~qd~ 776 (882)
+++.........++.++.. .....|+
T Consensus 241 s~~~~~~~~~~~i~~~L~~~~~~~~e~ 267 (340)
T PF12069_consen 241 SSAPASDLVAILIDALLQSPRLCHPEV 267 (340)
T ss_pred cCCCchhHHHHHHHHHhcCcccCChHH
Confidence 9999998888878888765 3344443
No 87
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=21.11 E-value=7.2e+02 Score=29.47 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHc
Q 002775 666 LLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRE 736 (882)
Q Consensus 666 ~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~v~~g~~~~~~~l~~~y~~ 736 (882)
..|..++......|..+|+....+++. + ..+++.....++......++.-+.+..+.++++.+.
T Consensus 341 ~~r~~~~Dal~~~GT~~a~~~i~~~i~----~---~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~ 404 (574)
T smart00638 341 KARRIFLDAVAQAGTPPALKFIKQWIK----N---KKITPLEAAQLLAVLPHTARYPTEEILKALFELAES 404 (574)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----c---CCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcC
Confidence 455566666666666666555443332 1 124443333333333333444455555555555543
No 88
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=20.85 E-value=3.2e+02 Score=21.86 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHH
Q 002775 824 SYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKE 876 (882)
Q Consensus 824 t~~~l~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~wl~~ 876 (882)
+...++++..||...|. .....+-+-|-......++.+-... |.++++.
T Consensus 12 ~kK~i~~v~~FF~~DPl--GqkIa~l~kdw~~~~~~~r~KiR~~--L~ey~k~ 60 (64)
T PF05596_consen 12 VKKWIEEVRNFFYEDPL--GQKIAQLAKDWNEICQEVRKKIRAA--LAEYCKG 60 (64)
T ss_pred HHHHHHHHHHHhccCch--HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 45678999999987653 3334444444455555566665545 6666654
No 89
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.22 E-value=1.2e+03 Score=28.11 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=30.6
Q ss_pred HHcCCCHHHHHHHHHHh-----CCCCC-HHHHHHHHHHh-ccCcCCccccee-eee-eccc------cHHHHHHHHH
Q 002775 734 YRETDLSQEKTRILSSL-----ASCPD-VNIVLEVLNFL-LSSEVRSQDAVY-GLA-VSIE------GRETAWKWLK 795 (882)
Q Consensus 734 y~~s~~~~ek~~ll~aL-----~ct~d-~~ll~~~L~~~-l~~~i~~qd~~~-~~~-v~~~------g~~~~~~fl~ 795 (882)
|..+.+.+-|+.|.--. -.+.| .|.+.-.|+++ +.+++-+.++.+ ++. |.+| +...+++++.
T Consensus 412 YL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq 488 (938)
T KOG1077|consen 412 YLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQ 488 (938)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHh
Confidence 56666666665543222 23444 56666666654 234455555543 344 4443 3344455554
Done!