Query 002778
Match_columns 882
No_of_seqs 388 out of 2123
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12490 BCAS3: Breast carcino 100.0 6.6E-53 1.4E-57 447.5 15.8 239 393-638 1-251 (251)
2 KOG2109 WD40 repeat protein [G 100.0 2.6E-45 5.7E-50 414.6 21.2 536 1-653 92-650 (788)
3 KOG2110 Uncharacterized conser 100.0 2.6E-38 5.6E-43 340.5 26.6 261 59-484 66-341 (391)
4 KOG2111 Uncharacterized conser 100.0 8.1E-30 1.8E-34 271.1 29.1 251 58-481 72-330 (346)
5 KOG0263 Transcription initiati 99.9 9.2E-21 2E-25 219.8 19.0 100 232-351 552-651 (707)
6 KOG0271 Notchless-like WD40 re 99.9 6E-21 1.3E-25 207.0 15.5 229 59-361 135-409 (480)
7 KOG0272 U4/U6 small nuclear ri 99.8 1.2E-20 2.7E-25 206.8 16.9 233 59-372 195-441 (459)
8 KOG0315 G-protein beta subunit 99.8 3.7E-19 8.1E-24 185.1 23.0 261 59-361 18-300 (311)
9 KOG0271 Notchless-like WD40 re 99.8 6.7E-20 1.4E-24 199.0 17.2 247 59-364 177-454 (480)
10 KOG0266 WD40 repeat-containing 99.8 1.5E-17 3.3E-22 190.9 22.6 191 59-362 179-377 (456)
11 KOG0272 U4/U6 small nuclear ri 99.8 2.8E-18 6E-23 188.5 15.4 214 80-371 175-397 (459)
12 KOG0279 G protein beta subunit 99.8 3.3E-17 7.2E-22 172.9 21.3 219 59-355 36-268 (315)
13 KOG0295 WD40 repeat-containing 99.8 7.2E-18 1.6E-22 182.6 13.9 225 59-361 128-376 (406)
14 KOG0286 G-protein beta subunit 99.7 2.2E-16 4.8E-21 167.6 21.7 238 59-372 75-326 (343)
15 cd00200 WD40 WD40 domain, foun 99.7 1.4E-15 3E-20 152.3 26.3 211 59-347 71-289 (289)
16 KOG0263 Transcription initiati 99.7 3.8E-17 8.2E-22 190.1 16.9 113 232-364 510-622 (707)
17 KOG0318 WD40 repeat stress pro 99.7 7.3E-16 1.6E-20 173.0 26.4 318 13-357 154-568 (603)
18 KOG0266 WD40 repeat-containing 99.7 4.8E-16 1E-20 178.6 24.8 188 58-360 222-420 (456)
19 KOG0291 WD40-repeat-containing 99.7 3E-16 6.4E-21 181.5 22.0 187 59-359 370-560 (893)
20 KOG0265 U5 snRNP-specific prot 99.7 3.3E-16 7.2E-21 166.7 18.7 262 39-372 45-319 (338)
21 KOG0285 Pleiotropic regulator 99.7 1.3E-16 2.9E-21 172.5 16.0 232 39-351 149-391 (460)
22 KOG0273 Beta-transducin family 99.7 3.9E-16 8.5E-21 173.5 19.3 219 59-358 255-491 (524)
23 KOG0319 WD40-repeat-containing 99.7 2.9E-16 6.4E-21 181.4 16.5 264 59-364 258-550 (775)
24 KOG0281 Beta-TrCP (transducin 99.7 5.1E-17 1.1E-21 174.9 9.1 212 59-351 215-430 (499)
25 cd00200 WD40 WD40 domain, foun 99.7 9.9E-15 2.1E-19 146.1 25.0 224 60-361 30-261 (289)
26 KOG0286 G-protein beta subunit 99.7 3.6E-15 7.8E-20 158.4 22.1 205 75-354 49-264 (343)
27 KOG0274 Cdc4 and related F-box 99.7 8.9E-15 1.9E-19 171.0 27.2 185 59-364 226-416 (537)
28 PLN00181 protein SPA1-RELATED; 99.7 1.3E-14 2.9E-19 176.8 28.2 222 59-348 553-792 (793)
29 KOG0273 Beta-transducin family 99.7 6.1E-15 1.3E-19 164.1 22.4 225 54-349 288-523 (524)
30 KOG0279 G protein beta subunit 99.6 7.9E-15 1.7E-19 155.1 19.8 122 232-372 80-203 (315)
31 KOG0282 mRNA splicing factor [ 99.6 1E-15 2.3E-20 170.6 12.0 217 59-372 235-485 (503)
32 PTZ00421 coronin; Provisional 99.6 6.4E-14 1.4E-18 162.8 27.0 201 39-352 73-293 (493)
33 KOG0276 Vesicle coat complex C 99.6 4E-15 8.6E-20 169.5 15.9 220 60-357 34-265 (794)
34 KOG0310 Conserved WD40 repeat- 99.6 3E-15 6.5E-20 167.1 14.6 220 56-353 43-272 (487)
35 PLN00181 protein SPA1-RELATED; 99.6 4.5E-14 9.7E-19 172.2 25.9 218 59-350 503-739 (793)
36 KOG0274 Cdc4 and related F-box 99.6 7.9E-15 1.7E-19 171.5 18.3 201 38-359 246-451 (537)
37 KOG0295 WD40 repeat-containing 99.6 1.4E-14 3E-19 157.5 18.4 188 59-347 213-404 (406)
38 PTZ00420 coronin; Provisional 99.6 9.8E-14 2.1E-18 163.1 26.5 103 233-355 144-254 (568)
39 KOG0319 WD40-repeat-containing 99.6 3.4E-14 7.4E-19 164.6 21.5 265 57-362 299-590 (775)
40 KOG0315 G-protein beta subunit 99.6 1.9E-14 4.1E-19 150.4 17.5 211 91-361 11-258 (311)
41 KOG0285 Pleiotropic regulator 99.6 8.6E-15 1.9E-19 158.6 15.0 182 75-372 145-330 (460)
42 KOG0316 Conserved WD40 repeat- 99.6 1.9E-14 4.2E-19 149.4 16.8 237 42-361 18-269 (307)
43 KOG0292 Vesicle coat complex C 99.6 1.8E-14 3.9E-19 168.7 17.9 215 60-372 30-261 (1202)
44 PTZ00421 coronin; Provisional 99.6 2.4E-13 5.2E-18 158.1 26.4 102 232-352 143-248 (493)
45 KOG0291 WD40-repeat-containing 99.6 7.7E-14 1.7E-18 161.8 21.5 236 58-371 284-530 (893)
46 KOG0268 Sof1-like rRNA process 99.6 9.8E-15 2.1E-19 158.5 13.2 253 59-351 87-347 (433)
47 KOG0281 Beta-TrCP (transducin 99.6 5.2E-15 1.1E-19 159.7 10.6 217 59-351 255-479 (499)
48 KOG0288 WD40 repeat protein Ti 99.6 1.8E-14 3.8E-19 158.5 13.5 222 39-383 217-445 (459)
49 PTZ00420 coronin; Provisional 99.6 6.8E-13 1.5E-17 156.1 27.2 199 39-350 72-294 (568)
50 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 2.1E-12 4.5E-17 134.8 27.0 259 59-358 9-288 (300)
51 KOG0643 Translation initiation 99.5 5.5E-13 1.2E-17 140.7 22.1 247 5-349 3-317 (327)
52 KOG0278 Serine/threonine kinas 99.5 8.1E-14 1.8E-18 145.7 15.1 152 39-289 141-298 (334)
53 KOG1009 Chromatin assembly com 99.5 3.3E-14 7.2E-19 156.2 12.6 206 232-468 31-245 (434)
54 KOG0305 Anaphase promoting com 99.5 9.2E-13 2E-17 151.0 21.8 237 57-351 193-463 (484)
55 KOG1407 WD40 repeat protein [F 99.5 5.9E-13 1.3E-17 140.1 17.8 215 59-353 40-265 (313)
56 KOG0308 Conserved WD40 repeat- 99.5 8.9E-14 1.9E-18 159.4 12.6 200 48-363 31-257 (735)
57 KOG1446 Histone H3 (Lys4) meth 99.5 4.6E-12 9.9E-17 136.2 24.3 227 59-364 34-278 (311)
58 KOG0318 WD40 repeat stress pro 99.5 1.4E-12 3.1E-17 146.9 21.2 106 232-356 165-272 (603)
59 KOG0306 WD40-repeat-containing 99.5 7.8E-13 1.7E-17 153.5 17.6 177 58-350 473-665 (888)
60 KOG0772 Uncharacterized conser 99.5 1.1E-12 2.4E-17 147.4 18.1 110 232-357 286-402 (641)
61 KOG0292 Vesicle coat complex C 99.5 1.2E-12 2.7E-17 153.7 18.5 256 13-358 16-289 (1202)
62 KOG0645 WD40 repeat protein [G 99.5 5.9E-12 1.3E-16 133.2 21.7 176 59-349 35-225 (312)
63 KOG0275 Conserved WD40 repeat- 99.5 3.1E-13 6.7E-18 145.0 12.1 109 232-360 280-389 (508)
64 KOG0284 Polyadenylation factor 99.5 2.9E-13 6.3E-18 148.9 11.7 215 80-372 96-317 (464)
65 KOG1539 WD repeat protein [Gen 99.5 9.3E-12 2E-16 146.1 24.3 119 233-354 466-611 (910)
66 KOG0277 Peroxisomal targeting 99.4 9.4E-13 2E-17 138.2 14.4 189 59-361 81-278 (311)
67 KOG0643 Translation initiation 99.4 6.1E-12 1.3E-16 132.9 19.9 188 59-359 30-230 (327)
68 KOG0316 Conserved WD40 repeat- 99.4 3.6E-12 7.9E-17 132.7 17.5 128 233-361 77-225 (307)
69 KOG0264 Nucleosome remodeling 99.4 3.9E-12 8.4E-17 141.6 18.7 106 232-356 245-354 (422)
70 KOG0278 Serine/threonine kinas 99.4 2.8E-13 6E-18 141.8 9.0 215 58-352 78-300 (334)
71 KOG0306 WD40-repeat-containing 99.4 2.3E-12 5.1E-17 149.7 17.3 245 60-372 393-645 (888)
72 KOG0264 Nucleosome remodeling 99.4 4.8E-12 1E-16 140.8 18.0 110 232-349 290-404 (422)
73 KOG0973 Histone transcription 99.4 1.3E-11 2.8E-16 148.4 22.6 225 59-351 89-357 (942)
74 KOG0276 Vesicle coat complex C 99.4 4.7E-12 1E-16 144.9 17.6 206 59-345 75-295 (794)
75 KOG0269 WD40 repeat-containing 99.4 1.4E-12 2.9E-17 152.1 13.3 197 54-364 100-312 (839)
76 KOG0275 Conserved WD40 repeat- 99.4 1.3E-12 2.7E-17 140.3 10.7 216 59-371 233-489 (508)
77 KOG0296 Angio-associated migra 99.4 5.4E-11 1.2E-15 129.9 23.2 263 60-349 85-398 (399)
78 KOG0310 Conserved WD40 repeat- 99.4 7.1E-12 1.5E-16 140.5 16.5 210 59-348 88-308 (487)
79 KOG0289 mRNA splicing factor [ 99.4 1.2E-11 2.6E-16 137.1 17.8 234 59-368 239-483 (506)
80 KOG0265 U5 snRNP-specific prot 99.4 1.8E-11 3.9E-16 131.0 18.5 239 24-346 76-335 (338)
81 KOG0284 Polyadenylation factor 99.4 1.8E-12 4E-17 142.7 11.2 180 59-353 200-384 (464)
82 KOG0645 WD40 repeat protein [G 99.4 4.4E-11 9.4E-16 126.7 20.9 112 233-361 79-195 (312)
83 KOG0308 Conserved WD40 repeat- 99.4 1.3E-11 2.7E-16 142.1 17.9 106 232-357 188-293 (735)
84 KOG0288 WD40 repeat protein Ti 99.4 5.6E-12 1.2E-16 139.1 14.4 174 59-347 281-459 (459)
85 KOG0313 Microtubule binding pr 99.4 2E-11 4.4E-16 133.7 18.4 176 58-350 212-419 (423)
86 KOG1407 WD40 repeat protein [F 99.4 4.3E-11 9.3E-16 126.3 19.6 217 57-349 83-311 (313)
87 KOG0283 WD40 repeat-containing 99.4 3E-11 6.5E-16 142.3 20.6 103 232-356 385-488 (712)
88 KOG0267 Microtubule severing p 99.3 1.1E-12 2.4E-17 151.9 7.0 120 233-372 88-207 (825)
89 KOG0313 Microtubule binding pr 99.3 5.3E-11 1.2E-15 130.5 19.2 245 59-362 123-390 (423)
90 KOG0973 Histone transcription 99.3 7.6E-12 1.6E-16 150.4 13.4 147 235-391 35-193 (942)
91 KOG1539 WD repeat protein [Gen 99.3 3E-11 6.6E-16 141.9 17.3 171 59-347 468-646 (910)
92 KOG0301 Phospholipase A2-activ 99.3 8.3E-11 1.8E-15 136.3 20.5 200 60-349 34-249 (745)
93 KOG2055 WD40 repeat protein [G 99.3 1.8E-11 3.8E-16 136.7 13.9 179 60-351 324-514 (514)
94 KOG0293 WD40 repeat-containing 99.3 3.3E-11 7.1E-16 133.1 15.8 251 59-351 244-515 (519)
95 KOG0296 Angio-associated migra 99.3 2.5E-10 5.5E-15 124.8 22.4 164 73-352 56-223 (399)
96 KOG0282 mRNA splicing factor [ 99.3 2E-11 4.4E-16 136.8 14.2 233 38-347 255-503 (503)
97 KOG0302 Ribosome Assembly prot 99.3 6E-11 1.3E-15 130.0 17.0 103 232-352 275-381 (440)
98 KOG2919 Guanine nucleotide-bin 99.3 3.4E-11 7.3E-16 129.9 14.7 119 237-372 230-351 (406)
99 KOG0267 Microtubule severing p 99.3 4.8E-12 1E-16 146.7 8.7 164 59-340 90-259 (825)
100 KOG2096 WD40 repeat protein [G 99.3 6.8E-11 1.5E-15 127.4 15.6 106 232-350 204-309 (420)
101 KOG0300 WD40 repeat-containing 99.3 4.3E-11 9.3E-16 128.6 13.8 102 232-353 289-390 (481)
102 KOG4378 Nuclear protein COP1 [ 99.3 3.3E-11 7.2E-16 135.1 13.3 120 232-372 182-304 (673)
103 KOG0640 mRNA cleavage stimulat 99.3 1.1E-10 2.3E-15 125.5 16.2 118 216-355 221-341 (430)
104 KOG1274 WD40 repeat protein [G 99.3 1.8E-10 3.9E-15 136.7 19.1 216 59-350 33-263 (933)
105 KOG4283 Transcription-coupled 99.2 1.7E-10 3.6E-15 123.4 15.6 110 235-351 166-278 (397)
106 KOG1446 Histone H3 (Lys4) meth 99.2 9.8E-10 2.1E-14 118.5 21.6 220 54-349 69-303 (311)
107 KOG0299 U3 snoRNP-associated p 99.2 1.3E-10 2.8E-15 129.8 15.2 176 60-351 223-412 (479)
108 KOG0277 Peroxisomal targeting 99.2 3.9E-10 8.4E-15 118.8 17.7 108 234-361 124-234 (311)
109 KOG1036 Mitotic spindle checkp 99.2 1.9E-10 4.1E-15 123.6 15.8 247 13-339 20-294 (323)
110 KOG1272 WD40-repeat-containing 99.2 2.1E-11 4.6E-16 136.1 6.6 208 60-348 150-361 (545)
111 KOG0294 WD40 repeat-containing 99.2 9.9E-10 2.1E-14 118.5 18.4 209 59-351 61-283 (362)
112 KOG0646 WD40 repeat protein [G 99.2 6.4E-10 1.4E-14 124.6 17.1 243 60-358 60-316 (476)
113 KOG1408 WD40 repeat protein [F 99.2 3.7E-10 8E-15 130.8 14.9 218 61-350 481-714 (1080)
114 KOG0639 Transducin-like enhanc 99.2 3.2E-10 7E-15 127.5 14.0 223 73-353 412-666 (705)
115 KOG0283 WD40 repeat-containing 99.1 1.2E-09 2.6E-14 129.1 18.1 176 58-351 387-578 (712)
116 KOG0301 Phospholipase A2-activ 99.1 1.6E-09 3.4E-14 125.8 18.3 200 59-350 79-289 (745)
117 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 9.8E-09 2.1E-13 107.2 22.3 99 234-353 92-191 (300)
118 KOG1332 Vesicle coat complex C 99.1 3.6E-09 7.7E-14 111.2 18.5 234 58-352 30-289 (299)
119 KOG0305 Anaphase promoting com 99.1 7.8E-10 1.7E-14 127.3 13.7 118 233-371 235-353 (484)
120 KOG4283 Transcription-coupled 99.1 2.9E-09 6.2E-14 114.1 16.9 131 59-289 122-277 (397)
121 KOG0294 WD40 repeat-containing 99.1 2.1E-09 4.6E-14 116.0 16.1 157 79-351 42-199 (362)
122 KOG0289 mRNA splicing factor [ 99.1 2.3E-09 5.1E-14 119.3 16.6 210 68-357 208-427 (506)
123 KOG0269 WD40 repeat-containing 99.1 4.8E-10 1E-14 131.3 11.7 100 232-350 151-251 (839)
124 KOG0641 WD40 repeat protein [G 99.1 1.4E-08 2.9E-13 105.7 20.6 185 60-349 162-349 (350)
125 KOG1188 WD40 repeat protein [G 99.1 2.8E-09 6E-14 116.1 15.2 189 59-355 48-248 (376)
126 KOG0772 Uncharacterized conser 99.0 1.5E-09 3.3E-14 122.6 13.1 108 233-358 335-454 (641)
127 PRK01742 tolB translocation pr 99.0 1.8E-08 3.9E-13 115.2 20.8 226 60-371 183-425 (429)
128 KOG2048 WD40 repeat protein [G 99.0 2.4E-08 5.2E-13 116.1 21.4 197 59-369 45-253 (691)
129 COG2319 FOG: WD40 repeat [Gene 99.0 1.1E-07 2.4E-12 98.9 24.6 181 60-355 133-320 (466)
130 KOG1408 WD40 repeat protein [F 99.0 6.9E-09 1.5E-13 120.6 16.4 135 220-359 468-636 (1080)
131 KOG1036 Mitotic spindle checkp 99.0 2.6E-09 5.7E-14 115.0 12.1 176 58-277 113-294 (323)
132 KOG0270 WD40 repeat-containing 99.0 1.1E-08 2.3E-13 114.4 17.0 200 40-352 242-452 (463)
133 KOG0647 mRNA export protein (c 99.0 3.5E-08 7.6E-13 106.3 20.0 237 51-366 37-298 (347)
134 KOG2106 Uncharacterized conser 99.0 1.1E-07 2.4E-12 107.7 24.7 272 61-390 222-512 (626)
135 KOG0650 WD40 repeat nucleolar 99.0 1.7E-09 3.6E-14 124.0 10.5 246 59-349 420-680 (733)
136 KOG2055 WD40 repeat protein [G 99.0 1.1E-08 2.4E-13 114.7 16.5 220 59-349 233-467 (514)
137 KOG2096 WD40 repeat protein [G 99.0 1E-08 2.3E-13 110.8 15.6 185 90-347 199-400 (420)
138 KOG2048 WD40 repeat protein [G 99.0 5E-08 1.1E-12 113.5 22.1 101 234-352 87-187 (691)
139 KOG0302 Ribosome Assembly prot 99.0 6.8E-09 1.5E-13 114.2 14.3 113 232-362 229-348 (440)
140 KOG0646 WD40 repeat protein [G 99.0 5.3E-09 1.1E-13 117.4 13.7 106 235-351 101-208 (476)
141 KOG4378 Nuclear protein COP1 [ 99.0 1.2E-08 2.7E-13 114.9 16.6 122 232-372 96-219 (673)
142 KOG0322 G-protein beta subunit 98.9 8.7E-09 1.9E-13 109.3 13.4 69 260-348 254-322 (323)
143 KOG0307 Vesicle coat complex C 98.9 2E-09 4.3E-14 130.6 9.5 102 233-352 180-287 (1049)
144 PRK11028 6-phosphogluconolacto 98.9 5E-07 1.1E-11 98.8 26.6 262 59-353 10-308 (330)
145 KOG2106 Uncharacterized conser 98.9 1.3E-07 2.8E-12 107.2 21.8 95 233-346 424-518 (626)
146 KOG1034 Transcriptional repres 98.9 5.5E-08 1.2E-12 105.7 17.6 99 234-351 112-213 (385)
147 KOG0268 Sof1-like rRNA process 98.9 5.8E-09 1.2E-13 114.3 10.1 232 74-351 59-304 (433)
148 KOG0639 Transducin-like enhanc 98.9 1.3E-08 2.8E-13 114.9 12.9 211 61-348 487-703 (705)
149 KOG0641 WD40 repeat protein [G 98.9 2.5E-07 5.3E-12 96.5 20.7 98 232-349 199-303 (350)
150 COG2319 FOG: WD40 repeat [Gene 98.9 4.7E-07 1E-11 94.2 23.1 99 235-353 176-275 (466)
151 KOG0647 mRNA export protein (c 98.9 2.6E-08 5.7E-13 107.2 14.0 167 58-338 134-312 (347)
152 KOG1273 WD40 repeat protein [G 98.9 4.2E-08 9.1E-13 106.1 15.0 245 73-351 17-282 (405)
153 KOG1274 WD40 repeat protein [G 98.8 6.9E-08 1.5E-12 115.3 17.7 176 58-346 115-297 (933)
154 KOG0299 U3 snoRNP-associated p 98.8 9.9E-08 2.2E-12 107.2 17.7 183 39-339 242-445 (479)
155 PRK03629 tolB translocation pr 98.8 8.7E-07 1.9E-11 101.7 25.7 230 60-371 178-427 (429)
156 KOG0307 Vesicle coat complex C 98.8 1.2E-08 2.6E-13 124.0 10.4 204 38-351 113-329 (1049)
157 KOG1273 WD40 repeat protein [G 98.8 1.8E-08 4E-13 108.9 10.4 137 219-360 31-194 (405)
158 KOG2445 Nuclear pore complex c 98.8 2.9E-07 6.2E-12 99.6 19.4 107 236-349 198-318 (361)
159 KOG0293 WD40 repeat-containing 98.8 7.5E-08 1.6E-12 107.0 14.5 99 236-354 290-389 (519)
160 KOG0300 WD40 repeat-containing 98.8 3E-07 6.5E-12 99.5 18.6 97 233-350 332-429 (481)
161 KOG0270 WD40 repeat-containing 98.8 1.6E-07 3.5E-12 105.2 16.3 100 232-350 304-405 (463)
162 KOG1332 Vesicle coat complex C 98.7 5.7E-08 1.2E-12 102.3 10.6 117 232-366 28-154 (299)
163 KOG1445 Tumor-specific antigen 98.7 1.2E-07 2.5E-12 109.5 13.0 98 232-349 695-798 (1012)
164 KOG0303 Actin-binding protein 98.7 2.1E-07 4.6E-12 103.1 14.6 107 232-358 149-258 (472)
165 KOG4328 WD40 protein [Function 98.7 3.6E-07 7.9E-12 102.8 16.6 101 233-349 297-399 (498)
166 KOG0321 WD40 repeat-containing 98.7 2.7E-07 5.9E-12 107.0 15.7 262 59-371 72-370 (720)
167 KOG2109 WD40 repeat protein [G 98.7 8.6E-08 1.9E-12 111.5 10.9 106 248-361 483-588 (788)
168 PF08662 eIF2A: Eukaryotic tra 98.7 2E-07 4.4E-12 96.1 12.6 94 232-349 78-179 (194)
169 KOG2110 Uncharacterized conser 98.7 4.6E-06 9.9E-11 92.2 23.1 206 58-360 103-343 (391)
170 PF08662 eIF2A: Eukaryotic tra 98.6 1.4E-06 2.9E-11 90.0 18.0 52 235-288 123-179 (194)
171 KOG0640 mRNA cleavage stimulat 98.6 4.8E-08 1.1E-12 105.4 7.5 116 219-356 120-253 (430)
172 KOG1007 WD repeat protein TSSC 98.6 7.1E-07 1.5E-11 96.0 15.1 99 234-351 190-291 (370)
173 KOG1963 WD40 repeat protein [G 98.6 1.2E-06 2.6E-11 104.7 18.5 236 59-352 35-284 (792)
174 KOG1445 Tumor-specific antigen 98.6 5.9E-08 1.3E-12 111.8 7.1 99 232-350 645-751 (1012)
175 KOG0290 Conserved WD40 repeat- 98.6 9.1E-07 2E-11 95.3 15.3 180 59-345 171-361 (364)
176 PRK04922 tolB translocation pr 98.6 6.3E-06 1.4E-10 94.5 23.4 210 61-352 184-412 (433)
177 KOG0771 Prolactin regulatory e 98.6 1.1E-07 2.4E-12 106.0 8.4 150 217-372 150-335 (398)
178 KOG1587 Cytoplasmic dynein int 98.6 2.2E-06 4.8E-11 101.2 19.4 260 61-350 222-517 (555)
179 KOG0771 Prolactin regulatory e 98.6 6.8E-07 1.5E-11 99.8 14.2 76 256-350 280-355 (398)
180 PRK01742 tolB translocation pr 98.5 3.2E-06 7E-11 96.8 19.3 99 236-356 227-329 (429)
181 KOG0303 Actin-binding protein 98.5 3.7E-07 8E-12 101.3 10.2 109 232-361 99-215 (472)
182 KOG0290 Conserved WD40 repeat- 98.5 3.6E-06 7.8E-11 90.8 17.4 123 232-371 168-297 (364)
183 PRK02889 tolB translocation pr 98.5 5E-06 1.1E-10 95.3 20.0 99 234-351 259-362 (427)
184 KOG0642 Cell-cycle nuclear pro 98.5 2.9E-07 6.2E-12 105.6 9.7 108 232-349 311-426 (577)
185 KOG1034 Transcriptional repres 98.5 2.1E-06 4.6E-11 93.7 15.6 72 39-110 133-214 (385)
186 KOG0644 Uncharacterized conser 98.5 2.7E-07 6E-12 109.2 9.4 246 59-350 210-469 (1113)
187 PRK02889 tolB translocation pr 98.5 1.9E-05 4.1E-10 90.6 24.1 210 61-352 176-404 (427)
188 PRK05137 tolB translocation pr 98.5 1.7E-05 3.7E-10 90.9 23.5 92 237-349 270-366 (435)
189 PRK04922 tolB translocation pr 98.5 8E-06 1.7E-10 93.7 19.8 95 236-350 271-369 (433)
190 KOG1063 RNA polymerase II elon 98.5 4.1E-07 9E-12 106.2 8.9 99 237-351 552-650 (764)
191 KOG3881 Uncharacterized conser 98.5 5E-06 1.1E-10 92.5 16.8 102 234-354 223-325 (412)
192 PRK05137 tolB translocation pr 98.4 2E-05 4.4E-10 90.4 22.3 81 238-340 315-397 (435)
193 PRK11028 6-phosphogluconolacto 98.4 9.9E-06 2.2E-10 88.7 18.6 117 218-351 86-207 (330)
194 KOG4328 WD40 protein [Function 98.4 5.8E-06 1.3E-10 93.3 15.3 107 232-349 340-450 (498)
195 KOG0649 WD40 repeat protein [G 98.4 2.4E-05 5.2E-10 82.9 18.5 98 234-353 133-239 (325)
196 KOG0650 WD40 repeat nucleolar 98.3 2E-05 4.3E-10 91.4 18.6 247 79-372 399-661 (733)
197 KOG2139 WD40 repeat protein [G 98.3 2.9E-05 6.3E-10 85.9 18.3 128 236-384 217-360 (445)
198 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00029 6.2E-09 79.6 26.7 256 61-354 27-335 (352)
199 PRK00178 tolB translocation pr 98.3 0.00024 5.1E-09 81.1 26.2 213 62-353 180-408 (430)
200 KOG0642 Cell-cycle nuclear pro 98.3 8.4E-06 1.8E-10 93.9 14.2 207 59-288 314-561 (577)
201 TIGR02800 propeller_TolB tol-p 98.3 0.00011 2.4E-09 82.7 22.9 93 237-350 258-355 (417)
202 KOG1538 Uncharacterized conser 98.3 1.4E-05 3.1E-10 93.1 15.5 144 82-347 14-160 (1081)
203 KOG1007 WD repeat protein TSSC 98.3 2.1E-05 4.6E-10 84.9 15.7 195 59-349 142-361 (370)
204 KOG0321 WD40 repeat-containing 98.3 5.9E-06 1.3E-10 96.2 12.4 119 232-351 117-250 (720)
205 PRK03629 tolB translocation pr 98.2 9.4E-05 2E-09 85.1 21.9 94 238-350 268-364 (429)
206 KOG2394 WD40 protein DMR-N9 [G 98.2 1.2E-06 2.6E-11 100.2 6.0 103 249-371 282-384 (636)
207 KOG2394 WD40 protein DMR-N9 [G 98.2 2.5E-06 5.5E-11 97.6 8.1 72 212-288 291-362 (636)
208 KOG1188 WD40 repeat protein [G 98.2 1.2E-05 2.6E-10 88.3 12.6 103 232-351 89-198 (376)
209 PF00400 WD40: WD domain, G-be 98.2 2.9E-06 6.2E-11 64.2 5.6 39 247-286 1-39 (39)
210 KOG0322 G-protein beta subunit 98.2 4.7E-06 1E-10 88.9 8.9 55 232-287 268-322 (323)
211 KOG1063 RNA polymerase II elon 98.2 4.4E-05 9.5E-10 89.8 17.2 236 59-351 32-299 (764)
212 PF10282 Lactonase: Lactonase, 98.2 0.00037 8E-09 77.8 23.8 85 259-358 246-331 (345)
213 KOG0644 Uncharacterized conser 98.2 6E-07 1.3E-11 106.5 1.6 94 232-349 207-300 (1113)
214 KOG2445 Nuclear pore complex c 98.1 3.2E-05 7E-10 84.1 14.1 119 219-352 21-147 (361)
215 KOG2111 Uncharacterized conser 98.1 0.00054 1.2E-08 75.1 23.0 116 232-351 198-324 (346)
216 KOG1517 Guanine nucleotide bin 98.1 3.9E-05 8.5E-10 93.5 15.5 105 232-351 1274-1383(1387)
217 PRK04792 tolB translocation pr 98.1 0.00029 6.3E-09 81.6 22.2 96 238-353 287-384 (448)
218 KOG0649 WD40 repeat protein [G 98.1 0.0002 4.4E-09 76.1 18.6 64 60-123 135-202 (325)
219 KOG1963 WD40 repeat protein [G 98.1 0.00022 4.8E-09 85.9 20.1 106 232-358 222-331 (792)
220 TIGR02800 propeller_TolB tol-p 98.0 0.00033 7.2E-09 78.8 20.5 85 238-344 303-389 (417)
221 KOG1517 Guanine nucleotide bin 98.0 0.00023 4.9E-09 87.1 19.8 101 233-349 1227-1333(1387)
222 KOG2139 WD40 repeat protein [G 98.0 5.7E-05 1.2E-09 83.7 13.6 77 254-350 193-269 (445)
223 KOG1538 Uncharacterized conser 98.0 0.00011 2.4E-09 86.0 15.5 242 58-350 30-294 (1081)
224 PRK04792 tolB translocation pr 98.0 0.00081 1.8E-08 78.0 22.8 51 61-111 242-298 (448)
225 KOG1009 Chromatin assembly com 98.0 7.7E-05 1.7E-09 83.5 13.2 82 249-350 115-196 (434)
226 PF02239 Cytochrom_D1: Cytochr 98.0 0.0016 3.4E-08 74.0 24.0 178 60-353 15-206 (369)
227 PRK00178 tolB translocation pr 98.0 0.00094 2E-08 76.3 22.2 93 237-350 267-364 (430)
228 PRK01029 tolB translocation pr 97.9 0.00092 2E-08 77.2 21.9 77 259-351 282-361 (428)
229 KOG1310 WD40 repeat protein [G 97.9 2.2E-05 4.8E-10 90.3 8.1 83 249-350 42-126 (758)
230 KOG1524 WD40 repeat-containing 97.9 3.9E-05 8.5E-10 88.1 10.0 78 232-343 203-280 (737)
231 KOG0974 WD-repeat protein WDR6 97.9 0.00019 4.1E-09 87.7 16.2 106 233-360 151-256 (967)
232 KOG0974 WD-repeat protein WDR6 97.9 0.00016 3.4E-09 88.4 15.0 100 233-354 193-293 (967)
233 PF02239 Cytochrom_D1: Cytochr 97.9 0.00012 2.7E-09 82.9 13.0 104 234-358 13-117 (369)
234 KOG2315 Predicted translation 97.8 0.00056 1.2E-08 79.4 17.6 129 60-288 250-390 (566)
235 PRK01029 tolB translocation pr 97.8 0.0019 4.2E-08 74.6 22.2 81 250-350 319-404 (428)
236 KOG1272 WD40-repeat-containing 97.8 6.2E-05 1.4E-09 85.4 8.3 220 61-359 191-417 (545)
237 COG2706 3-carboxymuconate cycl 97.7 0.0062 1.3E-07 68.0 22.8 84 258-357 244-329 (346)
238 COG2706 3-carboxymuconate cycl 97.7 0.0098 2.1E-07 66.4 23.5 119 217-354 94-226 (346)
239 KOG1310 WD40 repeat protein [G 97.7 0.00019 4E-09 82.9 10.1 167 79-349 49-231 (758)
240 KOG4497 Uncharacterized conser 97.6 0.00053 1.2E-08 75.4 12.7 111 233-347 110-238 (447)
241 PF00400 WD40: WD domain, G-be 97.5 0.00034 7.4E-09 52.8 6.9 37 309-347 3-39 (39)
242 KOG4547 WD40 repeat-containing 97.5 0.0089 1.9E-07 70.0 21.1 97 232-350 119-221 (541)
243 KOG2321 WD40 repeat protein [G 97.5 0.002 4.3E-08 75.1 15.0 126 237-378 155-280 (703)
244 PRK04043 tolB translocation pr 97.4 0.019 4.1E-07 66.4 22.8 50 61-110 213-268 (419)
245 KOG2919 Guanine nucleotide-bin 97.4 0.0014 2.9E-08 72.3 12.4 169 59-288 177-367 (406)
246 KOG1240 Protein kinase contain 97.4 0.0023 4.9E-08 79.8 15.3 96 242-351 1034-1130(1431)
247 KOG2321 WD40 repeat protein [G 97.4 0.0035 7.7E-08 73.1 15.3 187 59-352 153-346 (703)
248 PF13360 PQQ_2: PQQ-like domai 97.3 0.21 4.6E-06 51.5 26.8 58 60-117 2-64 (238)
249 KOG1409 Uncharacterized conser 97.3 0.0057 1.2E-07 68.0 15.5 219 59-351 44-272 (404)
250 KOG3881 Uncharacterized conser 97.2 0.0032 7E-08 70.7 12.8 56 233-289 265-321 (412)
251 KOG1523 Actin-related protein 97.2 0.0066 1.4E-07 67.0 14.7 80 252-348 95-175 (361)
252 KOG1240 Protein kinase contain 97.2 0.011 2.4E-07 74.1 17.2 108 234-360 1170-1284(1431)
253 PLN02919 haloacid dehalogenase 97.1 0.06 1.3E-06 69.1 24.4 73 261-352 807-891 (1057)
254 PRK04043 tolB translocation pr 97.1 0.069 1.5E-06 61.8 22.9 83 236-340 256-339 (419)
255 KOG4497 Uncharacterized conser 97.1 0.0027 5.8E-08 70.1 10.5 87 234-340 68-154 (447)
256 KOG3914 WD repeat protein WDR4 97.1 0.0012 2.6E-08 74.2 8.1 99 236-355 131-229 (390)
257 KOG1064 RAVE (regulator of V-A 97.1 0.0016 3.4E-08 83.6 9.9 90 235-355 2313-2404(2439)
258 KOG1275 PAB-dependent poly(A) 97.1 0.014 3E-07 71.4 17.1 184 61-350 157-343 (1118)
259 KOG1523 Actin-related protein 97.1 0.0075 1.6E-07 66.5 13.6 89 254-349 143-236 (361)
260 KOG4547 WD40 repeat-containing 97.1 0.021 4.6E-07 67.0 18.1 131 60-288 79-220 (541)
261 PF04762 IKI3: IKI3 family; I 97.0 0.16 3.4E-06 64.5 26.0 98 236-351 236-335 (928)
262 KOG1524 WD40 repeat-containing 97.0 0.01 2.3E-07 68.9 14.1 96 232-349 121-216 (737)
263 KOG4227 WD40 repeat protein [G 97.0 0.062 1.4E-06 60.7 19.3 234 60-348 126-386 (609)
264 smart00320 WD40 WD40 repeats. 96.9 0.0022 4.9E-08 44.4 5.4 39 247-286 2-40 (40)
265 TIGR02658 TTQ_MADH_Hv methylam 96.8 0.014 3E-07 66.2 13.6 99 236-353 26-140 (352)
266 PF07433 DUF1513: Protein of u 96.7 0.45 9.7E-06 53.1 23.5 98 237-352 138-250 (305)
267 KOG4415 Uncharacterized conser 96.7 0.0011 2.4E-08 67.8 2.9 41 567-608 17-58 (247)
268 COG4946 Uncharacterized protei 96.6 0.11 2.4E-06 60.1 18.5 131 38-181 356-503 (668)
269 KOG2315 Predicted translation 96.6 0.11 2.4E-06 61.0 18.4 101 237-360 251-355 (566)
270 KOG1354 Serine/threonine prote 96.5 0.012 2.5E-07 65.6 9.6 79 257-351 272-361 (433)
271 PF10282 Lactonase: Lactonase, 96.4 0.23 4.9E-06 55.7 19.6 108 236-354 61-179 (345)
272 COG4946 Uncharacterized protei 96.4 0.035 7.5E-07 64.0 12.7 97 233-350 377-478 (668)
273 KOG4227 WD40 repeat protein [G 96.4 0.026 5.6E-07 63.6 11.4 103 232-352 73-182 (609)
274 PF11768 DUF3312: Protein of u 96.3 0.015 3.3E-07 68.4 9.7 90 240-351 239-331 (545)
275 KOG2314 Translation initiation 96.3 0.2 4.4E-06 58.9 18.3 96 238-350 426-526 (698)
276 PLN02919 haloacid dehalogenase 96.2 0.72 1.6E-05 59.6 24.5 87 260-350 742-834 (1057)
277 KOG1587 Cytoplasmic dynein int 96.2 0.015 3.2E-07 69.5 8.8 57 232-289 459-517 (555)
278 TIGR03300 assembly_YfgL outer 96.2 0.92 2E-05 50.9 22.7 59 59-117 113-173 (377)
279 KOG4190 Uncharacterized conser 96.0 0.014 3E-07 67.9 7.1 92 236-348 850-947 (1034)
280 PF03178 CPSF_A: CPSF A subuni 95.9 0.48 1E-05 52.3 18.4 95 236-350 106-203 (321)
281 TIGR03300 assembly_YfgL outer 95.8 0.77 1.7E-05 51.5 19.8 89 235-346 287-376 (377)
282 PF15492 Nbas_N: Neuroblastoma 95.7 1.3 2.8E-05 48.9 20.2 117 235-351 117-261 (282)
283 KOG0280 Uncharacterized conser 95.7 0.064 1.4E-06 59.0 10.1 103 234-354 140-246 (339)
284 KOG1645 RING-finger-containing 95.5 0.032 7E-07 63.2 7.6 96 239-355 175-272 (463)
285 KOG4532 WD40-like repeat conta 95.3 0.17 3.6E-06 55.3 11.7 103 234-355 135-239 (344)
286 KOG1064 RAVE (regulator of V-A 95.2 0.075 1.6E-06 69.2 9.7 118 232-354 2225-2371(2439)
287 smart00320 WD40 WD40 repeats. 95.1 0.037 8.1E-07 38.0 4.2 28 320-347 13-40 (40)
288 KOG0309 Conserved WD40 repeat- 94.9 0.18 4E-06 60.9 11.5 107 233-350 220-340 (1081)
289 KOG1275 PAB-dependent poly(A) 94.6 0.15 3.2E-06 62.9 9.8 53 60-112 196-259 (1118)
290 KOG4190 Uncharacterized conser 94.4 0.038 8.2E-07 64.4 4.1 85 249-348 727-811 (1034)
291 KOG4714 Nucleoporin [Nuclear s 94.4 0.097 2.1E-06 56.8 6.9 114 232-347 197-316 (319)
292 COG5354 Uncharacterized protei 94.1 0.93 2E-05 53.2 14.5 78 235-341 338-421 (561)
293 KOG4640 Anaphase-promoting com 93.9 0.21 4.6E-06 59.6 8.9 76 259-356 22-99 (665)
294 PF08450 SGL: SMP-30/Gluconola 93.6 11 0.00025 39.6 26.1 99 237-349 115-213 (246)
295 KOG4532 WD40-like repeat conta 93.6 2.5 5.4E-05 46.5 15.5 57 232-289 220-283 (344)
296 KOG1334 WD40 repeat protein [G 93.2 0.13 2.8E-06 59.7 5.7 115 249-382 134-253 (559)
297 KOG2695 WD40 repeat protein [G 93.2 0.14 3.1E-06 57.3 5.8 110 234-361 231-344 (425)
298 PF15492 Nbas_N: Neuroblastoma 93.2 0.51 1.1E-05 51.8 9.8 72 263-350 3-74 (282)
299 KOG2314 Translation initiation 93.0 0.89 1.9E-05 53.8 11.9 81 237-338 282-365 (698)
300 PF03178 CPSF_A: CPSF A subuni 92.9 13 0.00027 41.2 20.7 50 61-110 62-118 (321)
301 PF08450 SGL: SMP-30/Gluconola 92.3 2.1 4.5E-05 45.2 13.0 97 238-353 61-168 (246)
302 KOG1354 Serine/threonine prote 92.2 0.26 5.6E-06 55.3 6.1 123 215-355 168-307 (433)
303 KOG2695 WD40 repeat protein [G 91.9 0.44 9.5E-06 53.6 7.4 104 232-351 269-378 (425)
304 COG5354 Uncharacterized protei 91.9 0.23 5E-06 58.0 5.4 93 241-356 16-123 (561)
305 KOG1912 WD40 repeat protein [G 91.8 2.1 4.6E-05 52.5 13.4 99 232-350 84-187 (1062)
306 KOG3621 WD40 repeat-containing 91.7 0.46 1E-05 57.4 7.8 102 233-350 51-155 (726)
307 PRK11138 outer membrane biogen 91.4 12 0.00026 42.6 18.7 59 59-117 128-188 (394)
308 COG5170 CDC55 Serine/threonine 91.4 1.3 2.8E-05 49.5 10.2 80 254-351 277-369 (460)
309 COG0823 TolB Periplasmic compo 91.3 1.7 3.8E-05 50.7 11.9 118 213-350 239-359 (425)
310 PF12894 Apc4_WD40: Anaphase-p 91.3 0.48 1E-05 38.8 5.2 31 319-349 11-41 (47)
311 KOG0280 Uncharacterized conser 91.1 0.67 1.4E-05 51.3 7.7 101 232-353 183-288 (339)
312 PRK02888 nitrous-oxide reducta 90.8 2.2 4.8E-05 51.9 12.3 116 233-352 211-354 (635)
313 KOG0882 Cyclophilin-related pe 90.6 1.4 3E-05 51.2 9.9 113 236-354 121-236 (558)
314 PF11768 DUF3312: Protein of u 90.4 0.56 1.2E-05 55.8 6.8 55 232-289 276-330 (545)
315 PF08553 VID27: VID27 cytoplas 89.7 4.8 0.0001 50.5 14.3 55 232-288 593-647 (794)
316 PF00930 DPPIV_N: Dipeptidyl p 89.1 1 2.3E-05 50.6 7.6 99 236-351 22-133 (353)
317 KOG2041 WD40 repeat protein [G 88.5 0.75 1.6E-05 55.7 6.0 98 233-348 32-144 (1189)
318 KOG3914 WD repeat protein WDR4 87.9 3.8 8.3E-05 46.9 10.8 56 232-289 168-224 (390)
319 KOG3617 WD40 and TPR repeat-co 87.7 1 2.2E-05 55.5 6.4 101 232-354 36-136 (1416)
320 KOG1920 IkappaB kinase complex 87.1 18 0.00039 46.8 16.8 124 237-401 222-353 (1265)
321 KOG2066 Vacuolar assembly/sort 87.0 2.2 4.7E-05 52.6 8.7 92 233-354 55-151 (846)
322 KOG2079 Vacuolar assembly/sort 86.6 0.75 1.6E-05 58.0 4.7 81 267-367 97-178 (1206)
323 COG0823 TolB Periplasmic compo 86.6 2.2 4.8E-05 49.9 8.4 98 237-355 218-318 (425)
324 PF07433 DUF1513: Protein of u 85.9 54 0.0012 37.1 18.3 42 235-276 75-117 (305)
325 PF12894 Apc4_WD40: Anaphase-p 85.9 1.9 4.1E-05 35.3 5.3 30 257-287 11-40 (47)
326 PRK11138 outer membrane biogen 85.8 20 0.00042 40.9 15.4 51 233-286 341-392 (394)
327 KOG1334 WD40 repeat protein [G 84.3 2.4 5.3E-05 49.6 7.1 119 212-351 143-265 (559)
328 KOG4640 Anaphase-promoting com 84.1 3.1 6.6E-05 50.2 8.0 55 233-289 38-93 (665)
329 KOG4714 Nucleoporin [Nuclear s 83.9 1.2 2.7E-05 48.6 4.3 95 237-350 159-255 (319)
330 PF06433 Me-amine-dh_H: Methyl 83.4 2.3 5E-05 48.3 6.4 59 59-117 267-330 (342)
331 KOG2066 Vacuolar assembly/sort 83.0 8.9 0.00019 47.5 11.3 102 232-356 88-194 (846)
332 cd00216 PQQ_DH Dehydrogenases 82.8 1.1E+02 0.0024 36.3 21.6 58 60-117 70-138 (488)
333 PF14783 BBS2_Mid: Ciliary BBS 82.7 13 0.00028 36.0 10.2 65 260-348 2-70 (111)
334 COG5170 CDC55 Serine/threonine 82.2 3.9 8.4E-05 45.8 7.3 34 321-355 282-315 (460)
335 KOG1008 Uncharacterized conser 82.1 1.6 3.5E-05 52.6 4.6 56 234-289 214-276 (783)
336 KOG1832 HIV-1 Vpr-binding prot 81.1 0.88 1.9E-05 56.3 2.1 98 232-351 1118-1216(1516)
337 PF13360 PQQ_2: PQQ-like domai 80.6 13 0.00028 38.2 10.4 92 236-351 2-96 (238)
338 PF02897 Peptidase_S9_N: Proly 80.6 12 0.00026 42.7 11.0 113 220-350 132-261 (414)
339 KOG1912 WD40 repeat protein [G 80.5 3.3 7.1E-05 51.0 6.5 101 232-351 442-553 (1062)
340 PRK02888 nitrous-oxide reducta 80.4 12 0.00027 45.8 11.3 106 236-350 295-405 (635)
341 KOG0309 Conserved WD40 repeat- 80.4 3.8 8.3E-05 50.2 6.9 108 239-365 93-205 (1081)
342 PF08553 VID27: VID27 cytoplas 79.5 20 0.00044 45.2 13.1 96 234-347 501-604 (794)
343 PF00930 DPPIV_N: Dipeptidyl p 78.9 1.2E+02 0.0026 34.2 18.4 56 60-116 22-79 (353)
344 KOG2114 Vacuolar assembly/sort 78.8 10 0.00022 47.4 9.9 103 233-347 41-153 (933)
345 PF10168 Nup88: Nuclear pore c 78.7 21 0.00046 44.6 12.9 89 258-351 85-181 (717)
346 PF04841 Vps16_N: Vps16, N-ter 78.3 1.4E+02 0.0031 34.8 22.9 49 59-108 59-110 (410)
347 PF04053 Coatomer_WDAD: Coatom 77.1 1.4E+02 0.0031 35.4 18.5 58 269-350 117-174 (443)
348 PRK13616 lipoprotein LpqB; Pro 77.1 13 0.00029 45.3 10.4 92 237-349 379-476 (591)
349 COG3391 Uncharacterized conser 76.3 37 0.00081 38.9 13.3 94 236-350 95-191 (381)
350 KOG2395 Protein involved in va 74.2 31 0.00067 41.5 11.8 54 233-288 447-500 (644)
351 PF12234 Rav1p_C: RAVE protein 73.4 36 0.00078 42.0 12.6 101 236-348 50-155 (631)
352 KOG2444 WD40 repeat protein [G 72.9 7.5 0.00016 42.0 6.0 101 233-353 76-181 (238)
353 cd00216 PQQ_DH Dehydrogenases 72.8 2.1E+02 0.0045 34.0 22.4 59 59-117 118-193 (488)
354 PF05694 SBP56: 56kDa selenium 72.4 50 0.0011 39.1 12.9 106 234-352 219-345 (461)
355 PF10313 DUF2415: Uncharacteri 72.0 8.3 0.00018 31.3 4.6 29 322-350 3-34 (43)
356 COG3391 Uncharacterized conser 71.9 52 0.0011 37.7 13.1 94 235-350 138-240 (381)
357 KOG1409 Uncharacterized conser 70.1 20 0.00044 40.9 8.8 114 245-364 102-243 (404)
358 KOG1645 RING-finger-containing 69.6 17 0.00037 42.1 8.2 56 233-289 212-267 (463)
359 PF07676 PD40: WD40-like Beta 69.6 9.7 0.00021 28.9 4.5 27 320-346 9-38 (39)
360 PF02897 Peptidase_S9_N: Proly 69.0 23 0.0005 40.4 9.4 73 259-351 125-212 (414)
361 PF07676 PD40: WD40-like Beta 68.2 15 0.00033 27.8 5.3 33 253-285 4-38 (39)
362 PRK13616 lipoprotein LpqB; Pro 67.6 35 0.00076 41.8 10.9 99 236-354 429-530 (591)
363 COG3386 Gluconolactonase [Carb 67.6 39 0.00085 38.0 10.6 74 259-351 112-195 (307)
364 KOG2079 Vacuolar assembly/sort 67.5 19 0.00042 46.2 8.7 32 257-289 130-161 (1206)
365 PF12429 DUF3676: Protein of u 67.2 6.5 0.00014 41.0 4.0 35 839-875 104-138 (230)
366 KOG1897 Damage-specific DNA bi 67.1 1.6E+02 0.0036 38.0 16.3 98 234-349 845-942 (1096)
367 COG3386 Gluconolactonase [Carb 66.8 2.3E+02 0.0049 32.1 20.8 51 237-288 143-193 (307)
368 PF05694 SBP56: 56kDa selenium 66.8 94 0.002 36.9 13.5 47 59-105 220-275 (461)
369 PF08596 Lgl_C: Lethal giant l 66.1 89 0.0019 36.4 13.4 87 259-349 3-115 (395)
370 KOG3617 WD40 and TPR repeat-co 66.0 12 0.00026 46.8 6.5 55 233-288 77-131 (1416)
371 PF14870 PSII_BNR: Photosynthe 64.0 35 0.00077 38.4 9.3 70 257-347 144-213 (302)
372 PF14655 RAB3GAP2_N: Rab3 GTPa 63.8 40 0.00087 39.6 10.0 40 249-289 299-338 (415)
373 PF08596 Lgl_C: Lethal giant l 63.3 47 0.001 38.7 10.5 83 249-350 78-174 (395)
374 PF14583 Pectate_lyase22: Olig 63.0 3.1E+02 0.0066 32.2 19.8 40 59-98 166-208 (386)
375 PF08728 CRT10: CRT10; InterP 62.5 2.3E+02 0.005 35.7 16.5 75 258-349 164-246 (717)
376 PF04762 IKI3: IKI3 family; I 62.1 77 0.0017 41.0 12.9 74 257-347 75-148 (928)
377 KOG2041 WD40 repeat protein [G 62.1 9.4 0.0002 46.9 4.5 95 232-349 88-186 (1189)
378 PF10313 DUF2415: Uncharacteri 60.9 19 0.00042 29.2 4.7 30 258-288 1-33 (43)
379 PF14783 BBS2_Mid: Ciliary BBS 56.3 2E+02 0.0044 28.0 11.9 85 233-344 21-109 (111)
380 KOG0882 Cyclophilin-related pe 54.9 7.7 0.00017 45.4 2.2 58 232-289 25-85 (558)
381 PF07250 Glyoxal_oxid_N: Glyox 53.9 31 0.00066 37.7 6.5 89 239-340 48-138 (243)
382 TIGR03075 PQQ_enz_alc_DH PQQ-d 52.9 4.9E+02 0.011 31.5 23.2 60 59-118 128-200 (527)
383 KOG1832 HIV-1 Vpr-binding prot 52.7 22 0.00047 44.9 5.5 45 320-364 1102-1146(1516)
384 PF06977 SdiA-regulated: SdiA- 49.9 1.8E+02 0.004 31.8 11.7 82 252-353 16-98 (248)
385 PF04841 Vps16_N: Vps16, N-ter 47.9 1.1E+02 0.0025 35.5 10.4 39 308-349 71-109 (410)
386 PF05096 Glu_cyclase_2: Glutam 47.3 90 0.002 34.7 8.8 58 59-116 108-166 (264)
387 PF10647 Gmad1: Lipoprotein Lp 46.9 2.1E+02 0.0046 31.0 11.6 75 259-350 67-145 (253)
388 PF12657 TFIIIC_delta: Transcr 45.8 1.6E+02 0.0035 29.9 10.0 29 321-349 87-121 (173)
389 KOG1916 Nuclear protein, conta 45.0 15 0.00033 46.3 2.7 54 233-288 201-265 (1283)
390 COG3490 Uncharacterized protei 45.0 2.2E+02 0.0048 32.3 11.2 42 236-277 139-181 (366)
391 PF05787 DUF839: Bacterial pro 43.2 48 0.001 40.1 6.5 29 309-337 491-519 (524)
392 PF10214 Rrn6: RNA polymerase 42.7 8.2E+02 0.018 31.1 19.6 70 261-351 207-278 (765)
393 PF12234 Rav1p_C: RAVE protein 41.6 2.3E+02 0.005 35.3 11.9 79 252-349 24-104 (631)
394 KOG1920 IkappaB kinase complex 41.5 1.1E+02 0.0025 40.0 9.5 67 258-345 69-135 (1265)
395 PF00780 CNH: CNH domain; Int 40.8 1.2E+02 0.0025 32.4 8.4 56 56-111 109-169 (275)
396 TIGR02276 beta_rpt_yvtn 40-res 40.6 1.3E+02 0.0029 22.4 6.5 23 267-289 1-23 (42)
397 PF04053 Coatomer_WDAD: Coatom 40.5 56 0.0012 38.7 6.4 43 62-105 127-171 (443)
398 PF06433 Me-amine-dh_H: Methyl 40.1 87 0.0019 36.0 7.5 51 238-289 270-321 (342)
399 PF01731 Arylesterase: Arylest 35.4 1.6E+02 0.0034 27.3 7.2 49 237-288 36-84 (86)
400 PF14781 BBS2_N: Ciliary BBSom 35.3 1.2E+02 0.0026 30.6 6.7 44 70-113 37-87 (136)
401 KOG4460 Nuclear pore complex, 34.9 1.5E+02 0.0032 36.0 8.5 88 259-351 105-200 (741)
402 KOG2444 WD40 repeat protein [G 34.7 38 0.00082 36.8 3.4 57 232-289 119-178 (238)
403 PRK13684 Ycf48-like protein; P 34.4 1.7E+02 0.0036 33.1 8.8 67 257-344 172-238 (334)
404 PF07569 Hira: TUP1-like enhan 33.9 1E+02 0.0022 32.9 6.6 51 56-106 27-94 (219)
405 PRK10115 protease 2; Provision 33.8 3.9E+02 0.0085 33.5 12.5 113 220-350 135-256 (686)
406 PF10647 Gmad1: Lipoprotein Lp 32.4 2.1E+02 0.0046 30.9 8.8 67 259-347 25-93 (253)
407 PF03088 Str_synth: Strictosid 32.1 1.2E+02 0.0026 28.3 5.8 44 233-277 33-76 (89)
408 KOG2395 Protein involved in va 31.8 2.3E+02 0.0049 34.6 9.3 100 234-348 353-458 (644)
409 KOG2114 Vacuolar assembly/sort 31.8 3.8E+02 0.0082 34.4 11.5 98 237-350 92-202 (933)
410 KOG3621 WD40 repeat-containing 31.1 84 0.0018 39.0 5.8 76 256-350 32-107 (726)
411 PF03022 MRJP: Major royal jel 30.5 2.3E+02 0.005 31.5 8.9 58 60-117 33-106 (287)
412 PF14269 Arylsulfotran_2: Aryl 30.2 3.6E+02 0.0079 30.2 10.4 70 260-348 146-219 (299)
413 TIGR02604 Piru_Ver_Nterm putat 29.9 2.3E+02 0.0049 32.3 8.9 91 233-341 87-205 (367)
414 KOG1008 Uncharacterized conser 29.0 20 0.00044 43.7 0.3 92 235-348 127-224 (783)
415 PF07569 Hira: TUP1-like enhan 28.9 92 0.002 33.3 5.2 38 75-112 7-45 (219)
416 PF03022 MRJP: Major royal jel 28.5 8.5E+02 0.018 27.0 13.4 53 237-289 34-97 (287)
417 PF01731 Arylesterase: Arylest 28.4 1.5E+02 0.0033 27.4 5.8 28 323-350 57-85 (86)
418 PF14781 BBS2_N: Ciliary BBSom 28.0 1.2E+02 0.0026 30.6 5.4 59 58-116 70-134 (136)
419 TIGR03075 PQQ_enz_alc_DH PQQ-d 27.0 2E+02 0.0043 34.8 8.1 57 61-117 441-500 (527)
420 KOG1898 Splicing factor 3b, su 26.9 1.6E+03 0.036 29.9 19.2 95 236-350 953-1049(1205)
421 PF14761 HPS3_N: Hermansky-Pud 26.9 3.1E+02 0.0066 29.7 8.5 43 279-339 37-79 (215)
422 PF12341 DUF3639: Protein of u 26.1 1.2E+02 0.0026 22.5 3.7 25 321-347 3-27 (27)
423 COG2133 Glucose/sorbosone dehy 24.7 2.4E+02 0.0051 33.2 7.9 29 250-278 168-197 (399)
424 PF07995 GSDH: Glucose / Sorbo 24.6 4E+02 0.0087 30.0 9.6 112 217-341 7-135 (331)
425 PF13570 PQQ_3: PQQ-like domai 24.5 1.9E+02 0.0041 22.0 5.0 23 86-108 17-40 (40)
426 COG3211 PhoX Predicted phospha 24.1 1.7E+02 0.0036 35.9 6.6 64 261-337 503-571 (616)
427 PF14870 PSII_BNR: Photosynthe 23.9 3.9E+02 0.0085 30.2 9.2 87 240-343 169-255 (302)
428 PF00780 CNH: CNH domain; Int 23.6 2.7E+02 0.0058 29.7 7.6 48 70-117 216-265 (275)
429 PF11715 Nup160: Nucleoporin N 23.3 1.2E+02 0.0026 36.3 5.4 33 321-353 216-252 (547)
430 TIGR03074 PQQ_membr_DH membran 23.2 1.7E+03 0.036 28.6 18.8 59 59-117 268-354 (764)
431 PHA02713 hypothetical protein; 22.9 1.4E+03 0.031 27.7 15.3 49 61-109 320-377 (557)
432 KOG2377 Uncharacterized conser 22.8 2.5E+02 0.0053 33.8 7.4 91 257-365 66-157 (657)
433 smart00564 PQQ beta-propeller 22.2 1.8E+02 0.0039 20.8 4.2 24 92-115 9-32 (33)
434 COG2058 RPP1A Ribosomal protei 22.0 31 0.00066 33.3 0.1 13 865-877 97-109 (109)
435 PLN00033 photosystem II stabil 22.0 6.7E+02 0.014 29.4 10.9 91 234-345 256-352 (398)
436 PF03088 Str_synth: Strictosid 21.7 3.8E+02 0.0083 24.9 7.1 27 309-337 48-74 (89)
437 TIGR03606 non_repeat_PQQ dehyd 21.6 2.3E+02 0.0049 33.9 7.1 19 261-279 149-167 (454)
438 PF01436 NHL: NHL repeat; Int 21.5 1.7E+02 0.0036 21.1 3.8 25 322-346 4-28 (28)
439 PRK10115 protease 2; Provision 20.9 4.6E+02 0.01 32.8 9.9 73 258-351 127-209 (686)
No 1
>PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer.
Probab=100.00 E-value=6.6e-53 Score=447.49 Aligned_cols=239 Identities=47% Similarity=0.751 Sum_probs=203.8
Q ss_pred CCCccccceeeeeccC-ccccccccccccccCC-ccccccceEEeeeccCccccccccccc-cCCcccEEEEcCCccEEE
Q 002778 393 PPPVTLSVVSRIKYSS-FGWLNTVSNASASSMG-KVFVPSGAVAAVFHNSIAHSSQHVNSR-TNSLEHLLVYTPSGYVVQ 469 (882)
Q Consensus 393 ~~~~~ls~vsrIk~~~-~gw~~~vs~~~s~at~-~~~~ps~~va~~Fh~~~~~~~~~~~~~-~~~~~~LlV~Sp~G~Li~ 469 (882)
|+|++|++|+|||+++ .||+|+++++++++++ +...+++++|+.||++......+..++ ...+++|||++|+|+|+|
T Consensus 1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq 80 (251)
T PF12490_consen 1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ 80 (251)
T ss_pred CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence 5789999999999998 8999999999888888 889999999999999966666655554 788999999999999999
Q ss_pred EecccCCCCCCCCCCCccccccccccCCCceeeeecccccceeeccCCCCcccc-cccccccCCCCceeeeeccCcCCcC
Q 002778 470 HELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREE-FISEATCDGHGAVEIFQNKSDCEDN 548 (882)
Q Consensus 470 Y~L~p~~g~e~~~~~~~~~~~~~~~~~~~~l~~~vep~~~W~vcR~~~w~E~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (882)
|.|+|+.+++...++++.+++....++|++|||+|||+|||||||+++|+||++ .+.++...++....++.+..++++
T Consensus 81 y~L~p~~~~~~~~~~~~~~~~~~~~~~~~~l~l~vep~~~Wdl~R~~~w~e~~~d~~~~~~~~~~~~~~~~~~~~~~~~- 159 (251)
T PF12490_consen 81 YELRPSPGSDPTEGGSGNGPPSESQMDDTELRLVVEPVQQWDLCRRPNWPEREEDCVPPLPENNPLDSASKIDPSDCRK- 159 (251)
T ss_pred EEEeeccccCcccccccccCccccccccCcceEEeeeccceeEeccccCCccchhccCCCCCCCHhhhhhhcccccccc-
Confidence 999999999998888898887655555689999999999999999999999999 666666666666544444444422
Q ss_pred CCccccccCcccccccccccCCCCccccceeeeeeeeEEeccCC-ccccccceeEEEEcCCccc-----ccCCC--ceeE
Q 002778 549 YGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDSPRA-----NTHAS--GEFE 620 (882)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~yls~aEvq~~~~~-~piW~~~~i~F~~m~~~~~-----~~~~~--~e~e 620 (882)
+...++++...+.+. +++++|++||||||||||||+++ +||||||||+||+|.++.. ++..+ ||||
T Consensus 160 -~~~~~~~~~~~~~~~-----~~~~~e~~~~wlS~vEi~th~~phrpLW~gpQf~F~~~~~~~~~~~~~s~~~~~~~e~E 233 (251)
T PF12490_consen 160 -GNSVNPSNDSYVSKE-----SDSPEERDHWWLSNVEIQTHSGPHRPLWMGPQFSFKTMSSPSSSELNISSSSGEAGEIE 233 (251)
T ss_pred -cCCcccccccccccc-----CCCcccccCcEEeeeeeEeccCCccccccCCcEEEEEecCCCCccccccccccccCcee
Confidence 455666655455555 89999999999999999999999 7999999999999998763 34566 9999
Q ss_pred EEEeeceeeeeeccCccc
Q 002778 621 IEKVSVHEVEIKRKELLP 638 (882)
Q Consensus 621 ie~~~~~~~~~r~k~l~p 638 (882)
|||||+|+||+|||||||
T Consensus 234 IE~~~~~~ve~r~k~l~p 251 (251)
T PF12490_consen 234 IEKIPTREVEIRRKDLLP 251 (251)
T ss_pred eccccccceeeeccccCC
Confidence 999999999999999998
No 2
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.6e-45 Score=414.55 Aligned_cols=536 Identities=30% Similarity=0.337 Sum_probs=393.2
Q ss_pred CCCCCCCCcccccccccCceEEEEecCCCCCCCCCcccccccccccCccCCCCCcccccCCeEEEEECCCCeEEEEEEcC
Q 002778 1 MQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR 80 (882)
Q Consensus 1 ~~~~p~~~~~~d~f~~~~pll~vv~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~sp~tVrlWDlkTG~~V~tLkf~ 80 (882)
|+|.|+.|.+.++|+.+||+++||..+.. .+..-.. +.|+.. ...+....++|+++..+++.++|+
T Consensus 92 m~~~pl~sg~~~gf~ss~avpavv~~t~S---~p~I~~S-----~~Gse~------d~t~an~~v~dl~S~~yah~l~fR 157 (788)
T KOG2109|consen 92 MDKSPLSSGPDSGFESSDAVPAVVRTTTS---PPTIPPS-----QTGSEQ------DSTQANEMVVDLMSLDYAHALPFR 157 (788)
T ss_pred cCCCCccCCCCCccccCCceeeecccccC---CCcCCCC-----CCccee------cccccccceeccccccchhccccc
Confidence 89999999999999999999998772222 2211101 222211 012344568899999999999988
Q ss_pred CcEEEEEEcCCEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCC
Q 002778 81 SSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 160 (882)
Q Consensus 81 s~V~sV~~S~rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~v 160 (882)
+|+|||+.|++.-+.+.+++.|.. ..+++|+++++++||+||+.....- +
T Consensus 158 -------------------qi~CfDa~tle~d~~~~~n~~p~l------~l~VGYGplaVg~rWaaya~~~a~~-----v 207 (788)
T KOG2109|consen 158 -------------------QIHCFDAPTLEIDSMNTINTKPRL------LLSVGYGPLAVGRRWAAYAQTLANQ-----V 207 (788)
T ss_pred -------------------ccccccCcccCCchhhcccccccc------ceeeccccccceeeeeeeccCcchh-----h
Confidence 899999999988888887777643 2467899999999999999753211 1
Q ss_pred CCccCCC-CCCCCCcCCCCCccEEEeeccchhhhhcccc-------ccccccccccCCCCCCCCccCCC---cccccccc
Q 002778 161 SPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLS-------KTLSKYCQELLPDGSSSPVSPNS---VWKVGRHA 229 (882)
Q Consensus 161 s~q~lt~-~~vs~s~SP~~GslVA~~A~essk~la~Gli-------ktLs~~~~~l~pdgs~s~~S~ss---~~k~~~la 229 (882)
+.+.+++ +.+++++|+..+-.+|.+|.|.++++|.++. +.+++||+..++.+-.....-.. .++++..
T Consensus 208 ss~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~~g~gpglgg~~~~~vGrvg~v- 286 (788)
T KOG2109|consen 208 SSHLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQIGTGPGLGGFEEVLVGRVGPV- 286 (788)
T ss_pred hhccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccCCCCCCCCCCcCceeccccccc-
Confidence 2255666 7888988888888999999999999999966 58899999866544221111111 1111111
Q ss_pred ccccC-CCce--EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 230 GADMD-NAGI--VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 230 ~~tgs-~dG~--V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
++. .-|+ +.+-|+.+...+.+|++|++||++|+|+++|.+|++++..|+.|++|++++.....+.+..+.+|.
T Consensus 287 --saesV~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s-- 362 (788)
T KOG2109|consen 287 --SAESVLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVS-- 362 (788)
T ss_pred --cceeecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccc--
Confidence 111 2355 889999999999999999999999999999999999999999999999998654443332233321
Q ss_pred ccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCCCCCCcccCCCCccc
Q 002778 307 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISE 386 (882)
Q Consensus 307 ~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~~~lpw~~~s~~~~~ 386 (882)
.||++.+.|++|+|+.+.+|++.+|.+|+= |.+.+...+|||-.+++...
T Consensus 363 -------~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------------------P~ls~t~~lp~~A~~Sl~~g 412 (788)
T KOG2109|consen 363 -------PRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------------------PALSLTCQLPAYADTSLDLG 412 (788)
T ss_pred -------hhcchHHHHHHHhhhhhcceEeecccCCCC-----------------------cccccccccchhhchhhhcc
Confidence 489999999999999999999999966543 34556667899999999877
Q ss_pred ccccCCCCCccccceeeeeccCccccccccccccccCCccccccceEEeeeccCccccccccccccCCcccEEEEcCCc-
Q 002778 387 QQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSG- 465 (882)
Q Consensus 387 Q~~~~~~~~~~ls~vsrIk~~~~gw~~~vs~~~s~at~~~~~ps~~va~~Fh~~~~~~~~~~~~~~~~~~~LlV~Sp~G- 465 (882)
-+....+.+..+...++++..+. | .+++-.++.-.|..+...+||....... .+.++.+..|||+.|.|
T Consensus 413 l~s~g~~aa~gla~~sag~~a~s----~---~asSv~s~s~~pd~ks~gv~~gsv~k~~---q~~~~~l~~llv~~psGd 482 (788)
T KOG2109|consen 413 LQSSGGLAAEGLATSSAGYTAHS----Y---TASSVFSRSVKPDSKSVGVGSGSVTKAN---QGVITVLNLLLVGEPSGD 482 (788)
T ss_pred ccccCcccceeeeeccccccccc----c---ccceeeccccccchhhccceeeeccccC---ccchhhhhheeeecCCCC
Confidence 77777777777777777776432 1 2222233445666767788887743221 24567789999999999
Q ss_pred cEEEEecccCCCCCCCCC-CCccccccccccCCCc-eeeeecccccceeeccCCCCcccccccccccCCCCceeeeeccC
Q 002778 466 YVVQHELLPSIGMGPSDD-GSRIRAASLMCLQEDD-LQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKS 543 (882)
Q Consensus 466 ~Li~Y~L~p~~g~e~~~~-~~~~~~~~~~~~~~~~-l~~~vep~~~W~vcR~~~w~E~~~~~~~~~~~~~~~~~~~~~~~ 543 (882)
.++||-|.+.+++.-.+. ..+.+-. .+...+++ .++.|+|.+.|+.||+-+|+|++++ +.+ ..|.+....
T Consensus 483 ~vvqh~vahs~~gv~~Ef~~~~~l~l-Sad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r--G~T-----saKv~~~af 554 (788)
T KOG2109|consen 483 GVVQHYVAHSDPGVYIEFSPDQRLVL-SADANENEFNIFLVMPHATWSSLAAVQHLYKLNR--GST-----SAKVVSTAF 554 (788)
T ss_pred ceeEEEeeccCccceeeeccccccee-cccccccccceEEeecccccHHHhhhhhhhhccC--CCc-----cceeeeeEe
Confidence 999999999988765443 3333322 23344677 9999999999999999999999997 333 335665555
Q ss_pred cCCcCCCccccccCcccccccccccCCCCccccceeeeeeeeEEeccCCccccccceeEEEEcCCccc------ccCCCc
Q 002778 544 DCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRA------NTHASG 617 (882)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~yls~aEvq~~~~~~piW~~~~i~F~~m~~~~~------~~~~~~ 617 (882)
+. +..-. .++. +...+.-+.+|-|+-+||+++|.. +|||+|.+ .||-|..+.. +...++
T Consensus 555 s~-dsrw~-------A~~t-----~~~TthVfk~hpYgg~aeqrth~~-lp~vnk~s-rFhrsagl~~d~~~~~s~ggg~ 619 (788)
T KOG2109|consen 555 SE-DSRWL-------AITT-----NHATTHVFKVHPYGGKAEQRTHGD-LPFVNKES-RFHRSAGLTDDADVTASIGGGK 619 (788)
T ss_pred ec-chhhh-------hhhh-----cCCceeeeeeccccccccceecCC-chhccchh-hhccccCCCccccccccCCCCc
Confidence 53 21000 0111 225566788999999999999999 99999999 9999998664 224567
Q ss_pred eeEEEEeeceeeeeeccCcccccccccccccccCCc
Q 002778 618 EFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR 653 (882)
Q Consensus 618 e~eie~~~~~~~~~r~k~l~p~~~~~~~~~~~~~~~ 653 (882)
|.||+++-++++|+|+||||||++ +.+.+.|
T Consensus 620 e~ei~~~~~~t~e~r~~dllPvy~-----~tS~rsr 650 (788)
T KOG2109|consen 620 EREIADSCSYTKEHRIADLLPVYA-----KTSGRSR 650 (788)
T ss_pred cceecccccccccccccccCCccc-----ccCcccc
Confidence 999999999999999999999999 5555556
No 3
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=2.6e-38 Score=340.49 Aligned_cols=261 Identities=29% Similarity=0.447 Sum_probs=223.9
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcCCEEEEEECCeEEEEECCCCceeEEEecC-CCcccCCCCccccccccee
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTY-PVPQLAGQGAVGINVGYGP 137 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~rlLAV~~d~qI~IWDa~T~e~l~tL~t~-p~p~~~~~~~~g~~~~~g~ 137 (882)
.|+.+++++++.+..++.+.|++.|.+|++|+++|+|++.++|||||+.+++.++++.+. |+| .+.
T Consensus 66 qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~-------------~gl 132 (391)
T KOG2110|consen 66 QPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNP-------------KGL 132 (391)
T ss_pred CCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCc-------------cce
Confidence 358899999999999999999999999999999999999999999999999999999875 554 356
Q ss_pred eEEcC----cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 138 MAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 138 lAlsp----R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
+|++| .+|||+++
T Consensus 133 ~AlS~n~~n~ylAyp~s--------------------------------------------------------------- 149 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGS--------------------------------------------------------------- 149 (391)
T ss_pred EeeccCCCCceEEecCC---------------------------------------------------------------
Confidence 77765 57777642
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
-..|.|.|||+.+.+.+..|.+|.++|.||+|+|+|++|||||.+|++||||.+..
T Consensus 150 --------------------~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~---- 205 (391)
T KOG2110|consen 150 --------------------TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE---- 205 (391)
T ss_pred --------------------CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC----
Confidence 11478999999999999999999999999999999999999999999999999953
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCCC
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVL 373 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~~ 373 (882)
| .++|+||||...+.|++|+||||+++|+++|+.+|||||.|+.... .+.
T Consensus 206 ---G----------~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~----------------~~~- 255 (391)
T KOG2110|consen 206 ---G----------QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSN----------------NPP- 255 (391)
T ss_pred ---c----------cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccccc----------------CCC-
Confidence 4 6999999999988999999999999999999999999999986320 000
Q ss_pred CCCcccCCCCcccccccCCCCCccccceeeeeccCccccccccccccccCCccccccceEEeeeccCcc--cccccccc-
Q 002778 374 SLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIA--HSSQHVNS- 450 (882)
Q Consensus 374 ~lpw~~~s~~~~~Q~~~~~~~~~~ls~vsrIk~~~~gw~~~vs~~~s~at~~~~~ps~~va~~Fh~~~~--~~~~~~~~- 450 (882)
-.|.+ ..+|.+.+++++.+ |+|++ |+.+++++|. +.+++..+
T Consensus 256 -----------------~~p~~------------~~~~~~~~sk~~~s-----ylps~-V~~~~~~~R~FAt~~l~~s~~ 300 (391)
T KOG2110|consen 256 -----------------ESPTA------------GTSWFGKVSKAATS-----YLPSQ-VSSVLDQSRKFATAKLPESGR 300 (391)
T ss_pred -----------------CCCCC------------CCcccchhhhhhhh-----hcchh-hhhhhhhccceeEEEccCCCc
Confidence 01111 24688888886665 99988 9999999997 56776655
Q ss_pred -------ccCCcccEEEEcCCccEEEEecccCCCCCCCCCC
Q 002778 451 -------RTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDG 484 (882)
Q Consensus 451 -------~~~~~~~LlV~Sp~G~Li~Y~L~p~~g~e~~~~~ 484 (882)
++++.++++|++-||+||.|+|+|+.||||.++.
T Consensus 301 ~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik 341 (391)
T KOG2110|consen 301 KNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIK 341 (391)
T ss_pred cceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEE
Confidence 5678899999999999999999999999998865
No 4
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.97 E-value=8.1e-30 Score=271.06 Aligned_cols=251 Identities=26% Similarity=0.306 Sum_probs=202.2
Q ss_pred ccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcCCEEEEEECCeEEEEECC-CCceeEEEecCCCcccCCCCcccccccce
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~rlLAV~~d~qI~IWDa~-T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
++|++|.|||-...+++.++.|.+.|.+|++++++|+|+++++|+||... +.+.++.+.+..+|. |
T Consensus 72 y~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPk-------------G 138 (346)
T KOG2111|consen 72 YPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPK-------------G 138 (346)
T ss_pred CCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCC-------------c
Confidence 58999999999999999999999999999999999999999999999987 788899999877762 3
Q ss_pred eeEEcC----cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 137 PMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 137 ~lAlsp----R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
.+++.| .+|||+
T Consensus 139 lC~~~~~~~k~~LafP---------------------------------------------------------------- 154 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFP---------------------------------------------------------------- 154 (346)
T ss_pred eEeecCCCCceEEEcC----------------------------------------------------------------
Confidence 454432 222222
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcE--EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCC
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 290 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~--v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~ 290 (882)
|...|.|+|-|+...+. ...+.||.+.|.+++++-+|++|||||.+||.|||||..+
T Consensus 155 --------------------g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~- 213 (346)
T KOG2111|consen 155 --------------------GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED- 213 (346)
T ss_pred --------------------CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-
Confidence 23457899999877654 4788999999999999999999999999999999999975
Q ss_pred cccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCccc
Q 002778 291 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLF 370 (882)
Q Consensus 291 ~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~s 370 (882)
| ..+++||||...|.|++|+||||+.|||++|++||+|||.+.... .+.+.|+ .++
T Consensus 214 ------g----------~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~--~~~~~~S------Sl~ 269 (346)
T KOG2111|consen 214 ------G----------TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE--NTEDESS------SLS 269 (346)
T ss_pred ------C----------cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC--CCccccc------ccc
Confidence 4 589999999999999999999999999999999999999997532 2223332 122
Q ss_pred CC-CCCCcccCCCCcccccccCCCCCccccceeeeeccCccccccccccccccCCccccccceEEeeeccCccccccccc
Q 002778 371 PV-LSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVN 449 (882)
Q Consensus 371 p~-~~lpw~~~s~~~~~Q~~~~~~~~~~ls~vsrIk~~~~gw~~~vs~~~s~at~~~~~ps~~va~~Fh~~~~~~~~~~~ 449 (882)
.. ..||.|+.|+|+++|+.++..+ + +..-|..+
T Consensus 270 ~~~~~lpky~~S~wS~~~f~l~~~~------------------------------------~-~~~~fg~~--------- 303 (346)
T KOG2111|consen 270 FKRLVLPKYFSSEWSFAKFQLPQGT------------------------------------Q-CIIAFGSE--------- 303 (346)
T ss_pred ccccccchhcccceeEEEEEccCCC------------------------------------c-EEEEecCC---------
Confidence 22 3589999999999886665332 2 22223333
Q ss_pred cccCCcccEEEEcCCccEEEEecccCCCCCCC
Q 002778 450 SRTNSLEHLLVYTPSGYVVQHELLPSIGMGPS 481 (882)
Q Consensus 450 ~~~~~~~~LlV~Sp~G~Li~Y~L~p~~g~e~~ 481 (882)
+ ..+++..-||..+.|.++|.+||+|.
T Consensus 304 ---~--nsvi~i~~Dgsy~k~~f~~~~~g~~~ 330 (346)
T KOG2111|consen 304 ---T--NTVIAICADGSYYKFKFDPKNGGESS 330 (346)
T ss_pred ---C--CeEEEEEeCCcEEEEEeccccccchh
Confidence 1 44888899999999999999999994
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.85 E-value=9.2e-21 Score=219.78 Aligned_cols=100 Identities=25% Similarity=0.396 Sum_probs=88.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+|+.|.+||+||+.+|..++.|.+|+++|.+|+|||+|++||+|+.+|. |+|||+.. | ..+.
T Consensus 552 TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~-------~----------~~v~ 613 (707)
T KOG0263|consen 552 TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLAN-------G----------SLVK 613 (707)
T ss_pred cCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCC-------C----------cchh
Confidence 5678999999999999999999999999999999999999999999775 99999953 2 2344
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.+ +||+ +.|++|.||.||..||+++.|.+|++||+...
T Consensus 614 ~l-~~Ht-~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 614 QL-KGHT-GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred hh-hccc-CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 44 6774 57999999999999999999999999999754
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=6e-21 Score=207.03 Aligned_cols=229 Identities=17% Similarity=0.143 Sum_probs=164.7
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCcee-EEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENK-FSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l-~tL~t~p~p~~~~~~~~g~~~ 133 (882)
-++||||||+.|....++.+ |.+.|.+|+++| +.||.| .+++|.+||..+++++ ..|.+|..+.. ..
T Consensus 135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It--------~L 206 (480)
T KOG0271|consen 135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWIT--------AL 206 (480)
T ss_pred CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccccee--------EE
Confidence 36999999999999999998 999999999998 578876 5889999999999864 55666765311 11
Q ss_pred cceeeEEcC--cEEEEeC--CCeEeccC-CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 134 GYGPMAVGP--RWLAYAS--NTLLLSNS-GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 134 ~~g~lAlsp--R~LAyss--~~v~lwdt-G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
.+.++-+.| |.||.++ +.++||++ ++.. + ..+++|....
T Consensus 207 awep~hl~p~~r~las~skDg~vrIWd~~~~~~--------------------~----------------~~lsgHT~~V 250 (480)
T KOG0271|consen 207 AWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC--------------------V----------------RTLSGHTASV 250 (480)
T ss_pred eecccccCCCccceecccCCCCEEEEEccCceE--------------------E----------------EEeccCccce
Confidence 222333333 8888775 47899985 1110 0 0111111100
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEEC-----------CCCCE------
Q 002778 209 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFD-----------PSGTL------ 271 (882)
Q Consensus 209 ~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFS-----------PdGtl------ 271 (882)
. +.--++..+. .++++|++|++|+...|+++..|++|...|+.|++| |.|+.
T Consensus 251 T--------CvrwGG~gli---ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 251 T--------CVRWGGEGLI---YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred E--------EEEEcCCceE---EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence 0 0000011111 167899999999999999999999999999999866 55655
Q ss_pred -------------------EEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCC
Q 002778 272 -------------------LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 332 (882)
Q Consensus 272 -------------------LATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~ 332 (882)
|++||.|.+ +.+|+-.. +.+.+.++ .|| .+.|..++||||++
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~t-lflW~p~~----------------~kkpi~rm-tgH-q~lVn~V~fSPd~r 380 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFT-LFLWNPFK----------------SKKPITRM-TGH-QALVNHVSFSPDGR 380 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCce-EEEecccc----------------cccchhhh-hch-hhheeeEEECCCcc
Confidence 999998776 77999531 11233332 354 46899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCCcccccccc
Q 002778 333 WIAIVSSKGTCHVFVLSPFGGDSGFQTLS 361 (882)
Q Consensus 333 ~LAsgS~DGTVhIWdI~~~gg~~~l~~H~ 361 (882)
|||++|.|..|+||+-.+++-..+||+|-
T Consensus 381 ~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 381 YIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred EEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 99999999999999999999999999995
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.2e-20 Score=206.76 Aligned_cols=233 Identities=15% Similarity=0.144 Sum_probs=181.2
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCC----EEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR----IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~r----lLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
..+.++||+..++..+++|. |.+.|.++.|.|. -||++ .|+.+++|++.+-+.+..|.+|..
T Consensus 195 wsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~------------ 262 (459)
T KOG0272|consen 195 WSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLA------------ 262 (459)
T ss_pred cCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchh------------
Confidence 56899999999999999998 8999999999874 56665 588999999998888888888765
Q ss_pred ccceeeEEcC--cEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 133 VGYGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 133 ~~~g~lAlsp--R~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
.+..++|.| ++|+.++ .+-++||... + +.+ +
T Consensus 263 -RVs~VafHPsG~~L~TasfD~tWRlWD~~t-------------------k-----------~El--------------L 297 (459)
T KOG0272|consen 263 -RVSRVAFHPSGKFLGTASFDSTWRLWDLET-------------------K-----------SEL--------------L 297 (459)
T ss_pred -hheeeeecCCCceeeecccccchhhccccc-------------------c-----------hhh--------------H
Confidence 135678877 9998775 3567887410 0 000 0
Q ss_pred CCCCC---CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 209 LPDGS---SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 209 ~pdgs---~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
...|+ ...+++.+++.+.+ +|+.|..-+|||+.+++++..|.+|..+|.+|+|||+|..|||+|.|++ +|||
T Consensus 298 ~QEGHs~~v~~iaf~~DGSL~~----tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVW 372 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDGSLAA----TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVW 372 (459)
T ss_pred hhcccccccceeEecCCCceee----ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEe
Confidence 11121 12234455555433 6788999999999999999999999999999999999999999999775 9999
Q ss_pred ecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCCCccccccccCCC
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 364 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSP-Dg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~ 364 (882)
|+... ..+|.+. +|+ ..|..|.|+| .|++|+++|.|+|++||.-........+.+|...+
T Consensus 373 DLR~r-----------------~~ly~ip-AH~-nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV 433 (459)
T KOG0272|consen 373 DLRMR-----------------SELYTIP-AHS-NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKV 433 (459)
T ss_pred eeccc-----------------ccceecc-ccc-chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccce
Confidence 99641 3567764 444 4799999999 78999999999999999998888888999998766
Q ss_pred CCCcccCC
Q 002778 365 GDPYLFPV 372 (882)
Q Consensus 365 ~~~~~sp~ 372 (882)
.+...++.
T Consensus 434 ~s~Dis~d 441 (459)
T KOG0272|consen 434 ISLDISPD 441 (459)
T ss_pred EEEEeccC
Confidence 55444443
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.83 E-value=3.7e-19 Score=185.12 Aligned_cols=261 Identities=18% Similarity=0.199 Sum_probs=172.6
Q ss_pred cCCeEEEEECCCCeEEEEEEcC-CcEEEEEEcC--CEEEEEECCeEEEEECCCCc--eeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~-s~V~sV~~S~--rlLAV~~d~qI~IWDa~T~e--~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+.|||||-+.||.+.++++|+ +.|..+.+.+ +.||++....|++||+++.. .+.++.+|...
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kN------------ 85 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKN------------ 85 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCc------------
Confidence 6899999999999999999986 6798888876 68888888899999999876 46677666441
Q ss_pred cceeeEE--cCcEEEEeCC--CeEeccCCCCCCccCCCCCCCCCc----CCCCCccEEEeeccchhhhhccccccccccc
Q 002778 134 GYGPMAV--GPRWLAYASN--TLLLSNSGRLSPQNLTPSGVSPST----SPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 205 (882)
Q Consensus 134 ~~g~lAl--spR~LAyss~--~v~lwdtG~vs~q~lt~~~vs~s~----SP~~GslVA~~A~essk~la~GliktLs~~~ 205 (882)
...+.| ..||+..++. +++||+.-.+..|.+-.. .++.+ .|.-+.|+. .|.+ -...++.-....|
T Consensus 86 -VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis---~dqs--g~irvWDl~~~~c 158 (311)
T KOG0315|consen 86 -VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELIS---GDQS--GNIRVWDLGENSC 158 (311)
T ss_pred -eEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEe---ecCC--CcEEEEEccCCcc
Confidence 123333 3499987754 699999633333322110 01110 111111110 0100 0001111111222
Q ss_pred c-ccCCCCCCC--CccCCCccccccccccccCCCceEEEEECCCC------cEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 002778 206 Q-ELLPDGSSS--PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------AIISQFKAHTSPISALCFDPSGTLLVTAS 276 (882)
Q Consensus 206 ~-~l~pdgs~s--~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~------~~v~~f~aH~spIsaLaFSPdGtlLATAS 276 (882)
. ++.|+.... .+...+++..++ .+...|.+.+|++-+. ..+.+|++|+..|....||||+++|||+|
T Consensus 159 ~~~liPe~~~~i~sl~v~~dgsml~----a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMPDGSMLA----AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred ccccCCCCCcceeeEEEcCCCcEEE----EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec
Confidence 2 244544321 223344455433 3467899999999764 46778999999999999999999999999
Q ss_pred cCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccc
Q 002778 277 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 277 ~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~ 356 (882)
.|. +++||++... -.+-....|+. ..+++.+||.||+||++++.|+++|||++...+....
T Consensus 235 sdk-tv~iwn~~~~-----------------~kle~~l~gh~-rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 235 SDK-TVKIWNTDDF-----------------FKLELVLTGHQ-RWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred CCc-eEEEEecCCc-----------------eeeEEEeecCC-ceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 954 5999999531 01111123433 4799999999999999999999999999998777666
Q ss_pred ccccc
Q 002778 357 FQTLS 361 (882)
Q Consensus 357 l~~H~ 361 (882)
..+|-
T Consensus 296 y~gh~ 300 (311)
T KOG0315|consen 296 YQGHH 300 (311)
T ss_pred cCCcc
Confidence 77774
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=6.7e-20 Score=199.00 Aligned_cols=247 Identities=16% Similarity=0.196 Sum_probs=174.7
Q ss_pred cCCeEEEEECCCCeEEE-EEE-cCCcEEEEEEcC-------CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCc
Q 002778 59 SPTAVRFYSFQSHCYEH-VLR-FRSSVCMVRCSP-------RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGA 128 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~-tLk-f~s~V~sV~~S~-------rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~ 128 (882)
.+++|++||.++|+++. .|. |.-.|.++++-| ++||.+. |+.|+|||+.-+++++++.+|..+
T Consensus 177 ~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~------- 249 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS------- 249 (480)
T ss_pred cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc-------
Confidence 46999999999998765 455 888999999965 6777765 788999999999999999998874
Q ss_pred ccccccceeeEEcCcEEEEeC---CCeEeccC--CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccc-----
Q 002778 129 VGINVGYGPMAVGPRWLAYAS---NTLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS----- 198 (882)
Q Consensus 129 ~g~~~~~g~lAlspR~LAyss---~~v~lwdt--G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~Gli----- 198 (882)
...+.+|..-|.|++ .++++|.. |.+ ...|++. +..|.+++...-..|-.|..
T Consensus 250 ------VTCvrwGG~gliySgS~DrtIkvw~a~dG~~-~r~lkGH----------ahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 250 ------VTCVRWGGEGLIYSGSQDRTIKVWRALDGKL-CRELKGH----------AHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred ------eEEEEEcCCceEEecCCCceEEEEEccchhH-HHhhccc----------chheeeeeccchhhhhccccccccc
Confidence 346666654444554 37999974 322 2333321 11222222211111111111
Q ss_pred ----------ccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEECC
Q 002778 199 ----------KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDP 267 (882)
Q Consensus 199 ----------ktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~-s~~~v~~f~aH~spIsaLaFSP 267 (882)
+.+.+|-.- .. ... .. +. +++.|+++.+|+-. +.+++..+.+|..-|+.+.|||
T Consensus 313 ~~~~~se~~~~Al~rY~~~-~~---------~~~-er--lV--SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP 377 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAV-LK---------DSG-ER--LV--SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP 377 (480)
T ss_pred cCCChHHHHHHHHHHHHHh-hc---------cCc-ce--eE--EecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence 122222211 11 111 11 11 57889999999964 5568889999999999999999
Q ss_pred CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 268 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 268 dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
||+++|+||.|. .|++||-.+ | +.+..| |||- +.|+.|+||.|++.|+++|.|.|++||+
T Consensus 378 d~r~IASaSFDk-SVkLW~g~t-------G----------k~lasf-RGHv-~~VYqvawsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 378 DGRYIASASFDK-SVKLWDGRT-------G----------KFLASF-RGHV-AAVYQVAWSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred CccEEEEeeccc-ceeeeeCCC-------c----------chhhhh-hhcc-ceeEEEEeccCccEEEEcCCCceEEEEE
Confidence 999999999954 599999865 4 456666 6865 5799999999999999999999999999
Q ss_pred CCCCCCccccccccCCC
Q 002778 348 LSPFGGDSGFQTLSSQG 364 (882)
Q Consensus 348 I~~~gg~~~l~~H~~~~ 364 (882)
+.+.+-...+-+|.-.|
T Consensus 438 V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 438 VRTKKLKQDLPGHADEV 454 (480)
T ss_pred eeeeeecccCCCCCceE
Confidence 99988888888886544
No 10
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=190.90 Aligned_cols=191 Identities=22% Similarity=0.309 Sum_probs=149.9
Q ss_pred cCCeEEEEECCCCe--EEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEEC-CCCceeEEEecCCCcccCCCCcccc
Q 002778 59 SPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDA-LTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 59 sp~tVrlWDlkTG~--~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa-~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
.++++++|++.+++ ..+++. |...|++++|++ ++|+.+. |.+|+|||+ ..+.+++++.+|+..
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~---------- 248 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY---------- 248 (456)
T ss_pred CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc----------
Confidence 67999999998888 677764 888999999987 5666654 678999999 566889999988763
Q ss_pred cccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 132 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 132 ~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
... ++|.+. + .+++
T Consensus 249 ---v~~-------~~f~p~---------------------------g-~~i~---------------------------- 262 (456)
T KOG0266|consen 249 ---VTS-------VAFSPD---------------------------G-NLLV---------------------------- 262 (456)
T ss_pred ---eEE-------EEecCC---------------------------C-CEEE----------------------------
Confidence 122 333221 1 1110
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
+|+.|++|+|||+.+++++..|.+|.++|++++|+++|++|++++.|| .|+|||+..
T Consensus 263 --------------------Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~-~i~vwd~~~-- 319 (456)
T KOG0266|consen 263 --------------------SGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG-TIRVWDLET-- 319 (456)
T ss_pred --------------------EecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc-cEEEEECCC--
Confidence 356799999999999999999999999999999999999999999866 599999964
Q ss_pred ccCCCCCCccccCCcccEEEEEEecccCC-cEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccC
Q 002778 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 362 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~l~~L~RG~t~a-~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~ 362 (882)
+. ..++..+. +.... .++++.|||++++|++++.|+++++|++..........+|..
T Consensus 320 -----~~--------~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 320 -----GS--------KLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred -----Cc--------eeeeeccc-CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 20 00233443 44444 799999999999999999999999999998887778888863
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=2.8e-18 Score=188.47 Aligned_cols=214 Identities=18% Similarity=0.136 Sum_probs=161.6
Q ss_pred CCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC----cEEEEeC--C
Q 002778 80 RSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYAS--N 150 (882)
Q Consensus 80 ~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp----R~LAyss--~ 150 (882)
..+|..+.|+. +.||++ .++.++||.+.+...+.+|.+|... .+.+.|.| .-||.++ .
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~-------------v~~~~fhP~~~~~~lat~s~Dg 241 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR-------------VGAAVFHPVDSDLNLATASADG 241 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccc-------------eeeEEEccCCCccceeeeccCC
Confidence 34677788875 677765 6899999999999999999998762 34556666 2566553 4
Q ss_pred CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccc
Q 002778 151 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG 230 (882)
Q Consensus 151 ~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~ 230 (882)
++++|.... .. .++.|.+|..+ .+...+.|+++.++
T Consensus 242 tvklw~~~~-------------------e~----------------~l~~l~gH~~R------Vs~VafHPsG~~L~--- 277 (459)
T KOG0272|consen 242 TVKLWKLSQ-------------------ET----------------PLQDLEGHLAR------VSRVAFHPSGKFLG--- 277 (459)
T ss_pred ceeeeccCC-------------------Cc----------------chhhhhcchhh------heeeeecCCCceee---
Confidence 788887411 00 11223333322 12334556677765
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 231 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 231 ~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
+++.|-+-++||+.++..+....+|..+|.+++|.|||.+++|++.|- .-||||+.+ | +++
T Consensus 278 -TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~-~~RvWDlRt-------g----------r~i 338 (459)
T KOG0272|consen 278 -TASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS-LGRVWDLRT-------G----------RCI 338 (459)
T ss_pred -ecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc-hhheeeccc-------C----------cEE
Confidence 678999999999999999999999999999999999999999999954 589999975 4 466
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 371 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp 371 (882)
..| .||. ..|.+|+|||+|..||+||.|+|++||||........+-+|..-|....+.|
T Consensus 339 m~L-~gH~-k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 339 MFL-AGHI-KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred EEe-cccc-cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc
Confidence 555 4654 5799999999999999999999999999998888888888876555554444
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.76 E-value=3.3e-17 Score=172.90 Aligned_cols=219 Identities=16% Similarity=0.205 Sum_probs=160.8
Q ss_pred cCCeEEEEEC-----CCCeEEEEEE-cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcc
Q 002778 59 SPTAVRFYSF-----QSHCYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAV 129 (882)
Q Consensus 59 sp~tVrlWDl-----kTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~ 129 (882)
.++++.+|++ +.|..++.|+ |...|..|.+++ ..|.++.|+.+++||+.+++..+.+.+|..-
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d-------- 107 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD-------- 107 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc--------
Confidence 5689999987 4577788887 677799999876 3556677899999999999999999888761
Q ss_pred cccccceeeEEcC--cEEEEeC--CCeEeccC-CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccc
Q 002778 130 GINVGYGPMAVGP--RWLAYAS--NTLLLSNS-GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY 204 (882)
Q Consensus 130 g~~~~~g~lAlsp--R~LAyss--~~v~lwdt-G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~ 204 (882)
.-.+||++ |-|..++ +++++|++ |... +..+.+....-.
T Consensus 108 -----Vlsva~s~dn~qivSGSrDkTiklwnt~g~ck---------------------~t~~~~~~~~WV---------- 151 (315)
T KOG0279|consen 108 -----VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK---------------------YTIHEDSHREWV---------- 151 (315)
T ss_pred -----eEEEEecCCCceeecCCCcceeeeeeecccEE---------------------EEEecCCCcCcE----------
Confidence 23567777 6665543 57889985 2211 111111000000
Q ss_pred ccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 002778 205 CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINI 284 (882)
Q Consensus 205 ~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrV 284 (882)
+-+.|+|+.....+. +++.|++|+|||+.+-+....|.+|++.+++++|||||.++|+|+.+|. +.+
T Consensus 152 --------scvrfsP~~~~p~Iv----s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~L 218 (315)
T KOG0279|consen 152 --------SCVRFSPNESNPIIV----SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AML 218 (315)
T ss_pred --------EEEEEcCCCCCcEEE----EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEE
Confidence 012234443333332 5688999999999999999999999999999999999999999999775 899
Q ss_pred EecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 285 Wdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
||+.. + +++|.|. ....|.+++|||.--||+.+...+ |+|||+++.....
T Consensus 219 wdL~~-------~----------k~lysl~---a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 219 WDLNE-------G----------KNLYSLE---AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVE 268 (315)
T ss_pred EEccC-------C----------ceeEecc---CCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhh
Confidence 99964 3 5788874 235799999999999999887554 9999999865443
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=7.2e-18 Score=182.64 Aligned_cols=225 Identities=17% Similarity=0.205 Sum_probs=167.1
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEECC-eEEEEECCC-CceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGLAT-QIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~d~-qI~IWDa~T-~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+.+|++||..||++...|+ |.+.|.+|+|+. ++||.+..+ +|++||..+ .++++++.+|..
T Consensus 128 ~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h------------- 194 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH------------- 194 (406)
T ss_pred CCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccc-------------
Confidence 36899999999999999998 888899999974 788877654 599999876 567777666543
Q ss_pred cceeeEEcC--cEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccC
Q 002778 134 GYGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 134 ~~g~lAlsp--R~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~ 209 (882)
....+++-| .+|+.++ ++++.|+... |. .++++.++...
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~t-------------------g~----------------cv~t~~~h~ew-- 237 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDT-------------------GY----------------CVKTFPGHSEW-- 237 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEeccc-------------------ce----------------eEEeccCchHh--
Confidence 123445544 6666554 4677886310 00 00112111110
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC---------------CCEEEE
Q 002778 210 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS---------------GTLLVT 274 (882)
Q Consensus 210 pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPd---------------GtlLAT 274 (882)
.-.+.++.++..++ +++.|.+|++|-+.++++...|+.|..+|-+++|-|. |..|++
T Consensus 238 ----vr~v~v~~DGti~A----s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 238 ----VRMVRVNQDGTIIA----SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred ----EEEEEecCCeeEEE----ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence 00112233334333 5688999999999999999999999999999999762 359999
Q ss_pred EEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 275 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 275 AS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+|.|++ |++||+.+ | .+|.+|. |+. ..|.+++|+|-|+||+++.+|+|+||||++...+.
T Consensus 310 ~SrDkt-Ik~wdv~t-------g----------~cL~tL~-ghd-nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 310 GSRDKT-IKIWDVST-------G----------MCLFTLV-GHD-NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred ecccce-EEEEeccC-------C----------eEEEEEe-ccc-ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 999765 99999965 4 6888884 665 47999999999999999999999999999999999
Q ss_pred ccccccc
Q 002778 355 SGFQTLS 361 (882)
Q Consensus 355 ~~l~~H~ 361 (882)
.++..|.
T Consensus 370 k~~~ah~ 376 (406)
T KOG0295|consen 370 KTLEAHE 376 (406)
T ss_pred eccCCCc
Confidence 8888886
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.73 E-value=2.2e-16 Score=167.58 Aligned_cols=238 Identities=16% Similarity=0.104 Sum_probs=162.5
Q ss_pred cCCeEEEEECCCCeEEEEEEcC-CcEEEEEEcC--CEEEE-EECCeEEEEECCCCc------eeEEEecCCCcccCCCCc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV-GLATQIYCFDALTLE------NKFSVLTYPVPQLAGQGA 128 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~-s~V~sV~~S~--rlLAV-~~d~qI~IWDa~T~e------~l~tL~t~p~p~~~~~~~ 128 (882)
-++++.|||.-|...++-+..+ .+|..++|+| ..||. |+++..-||++.+.+ ..+.|.+|..
T Consensus 75 qDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg-------- 146 (343)
T KOG0286|consen 75 QDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG-------- 146 (343)
T ss_pred cCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc--------
Confidence 4689999999999999999976 4799999987 67887 468999999998662 2233444432
Q ss_pred ccccccce-eeEEcC--cEEEEeCC-CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccc
Q 002778 129 VGINVGYG-PMAVGP--RWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY 204 (882)
Q Consensus 129 ~g~~~~~g-~lAlsp--R~LAyss~-~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~ 204 (882)
|- .+-|-+ ..|--+++ +..+||. |.++++ ..|.+|
T Consensus 147 ------ylScC~f~dD~~ilT~SGD~TCalWDi------------------------------e~g~~~-----~~f~GH 185 (343)
T KOG0286|consen 147 ------YLSCCRFLDDNHILTGSGDMTCALWDI------------------------------ETGQQT-----QVFHGH 185 (343)
T ss_pred ------eeEEEEEcCCCceEecCCCceEEEEEc------------------------------ccceEE-----EEecCC
Confidence 11 121111 11211222 3455653 111111 122222
Q ss_pred ccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 002778 205 CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINI 284 (882)
Q Consensus 205 ~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrV 284 (882)
.-+++ ...++++ +.+.. .+|+-|+..+|||+.++.++++|.+|.+.|++++|.|+|.-+||+|.|++ +|+
T Consensus 186 ~gDV~----slsl~p~-~~ntF----vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRl 255 (343)
T KOG0286|consen 186 TGDVM----SLSLSPS-DGNTF----VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRL 255 (343)
T ss_pred cccEE----EEecCCC-CCCeE----EecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEE
Confidence 21111 0112221 22221 16788999999999999999999999999999999999999999999876 899
Q ss_pred EecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCC
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 364 (882)
Q Consensus 285 Wdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~ 364 (882)
||+... +.+..+..-.....|++|+||.-|++|.+|-.|.+++|||.-.....-.+.+|..-+
T Consensus 256 yDlRaD-----------------~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRv 318 (343)
T KOG0286|consen 256 YDLRAD-----------------QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRV 318 (343)
T ss_pred EeecCC-----------------cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCee
Confidence 999742 233333322234579999999999999999999999999987665555789998767
Q ss_pred CCCcccCC
Q 002778 365 GDPYLFPV 372 (882)
Q Consensus 365 ~~~~~sp~ 372 (882)
.+..++|.
T Consensus 319 Scl~~s~D 326 (343)
T KOG0286|consen 319 SCLGVSPD 326 (343)
T ss_pred EEEEECCC
Confidence 66666653
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.73 E-value=1.4e-15 Score=152.26 Aligned_cols=211 Identities=20% Similarity=0.264 Sum_probs=151.9
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.++.|++||+.+++.+..+. +...|.++.+++ ++++++. ++.|++||+.+++....+..+..+
T Consensus 71 ~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------------- 137 (289)
T cd00200 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW------------- 137 (289)
T ss_pred CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc-------------
Confidence 47899999999988888887 667899999987 6777777 889999999988888777654431
Q ss_pred ceeeEEcC--cEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCC
Q 002778 135 YGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 210 (882)
Q Consensus 135 ~g~lAlsp--R~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~p 210 (882)
...+++.| ++|+... ..+.+|+.... ..+..+.. +
T Consensus 138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-------------------~~~~~~~~----------------~------ 176 (289)
T cd00200 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTG-------------------KCVATLTG----------------H------ 176 (289)
T ss_pred EEEEEEcCcCCEEEEEcCCCcEEEEEcccc-------------------ccceeEec----------------C------
Confidence 34567776 6676654 46778874210 00000000 0
Q ss_pred CCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCC
Q 002778 211 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 290 (882)
Q Consensus 211 dgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~ 290 (882)
.+....+..+++++.+. .+..+|.|++||+.+++.+..+..|..+|.+++|+|++.++++++.+|. |++|++..
T Consensus 177 ~~~i~~~~~~~~~~~l~----~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~- 250 (289)
T cd00200 177 TGEVNSVAFSPDGEKLL----SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRT- 250 (289)
T ss_pred ccccceEEECCCcCEEE----EecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCC-
Confidence 00011112223333332 2345899999999999999999899999999999999999999986675 89999953
Q ss_pred cccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 291 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 291 ~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
+ ..+..+. ++ ...|.+++|++++++|++++.||+++||+
T Consensus 251 ------~----------~~~~~~~-~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 251 ------G----------ECVQTLS-GH-TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ------c----------eeEEEcc-cc-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 2 2444443 33 35799999999999999999999999996
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.73 E-value=3.8e-17 Score=190.05 Aligned_cols=113 Identities=12% Similarity=0.202 Sum_probs=98.0
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|++-++|.....+.++.|.+|-+.|.|++|+|+..++||+|.| +++|+||+.+ | ..+.
T Consensus 510 tas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD-~tVRlWDv~~-------G----------~~VR 571 (707)
T KOG0263|consen 510 TASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSD-RTVRLWDVST-------G----------NSVR 571 (707)
T ss_pred ecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCC-ceEEEEEcCC-------C----------cEEE
Confidence 45678999999999999999999999999999999999999999985 5699999976 4 2344
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 364 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~ 364 (882)
.| +||+ ++|.+|+|||+|+|||+|+.||.|+|||+....-...+++|+..+
T Consensus 572 iF-~GH~-~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti 622 (707)
T KOG0263|consen 572 IF-TGHK-GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTI 622 (707)
T ss_pred Ee-cCCC-CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCce
Confidence 44 6865 689999999999999999999999999998877777889996543
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.73 E-value=7.3e-16 Score=173.01 Aligned_cols=318 Identities=16% Similarity=0.154 Sum_probs=184.5
Q ss_pred cccccCceEEEEecCCCCC----CCCCc----ccccccccccCccCCCCCcc---cccCCeEEEEECCCCeEEEEEE---
Q 002778 13 GFRKLHPFLLVVAGEDTNT----LAPGQ----NRSHLGGVRDGMMDSQSGNC---VNSPTAVRFYSFQSHCYEHVLR--- 78 (882)
Q Consensus 13 ~f~~~~pll~vv~~d~~~~----~~~~~----~~~~~~~v~~~~~~~~~~~~---~~sp~tVrlWDlkTG~~V~tLk--- 78 (882)
.|+-+||+=++-++|+... |-|-. ...|.-=|+.....+. |+- +.++++|.+||=++|+.+..|.
T Consensus 154 ~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~ 232 (603)
T KOG0318|consen 154 DFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSD 232 (603)
T ss_pred eccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCC
Confidence 4999999988888887643 11100 0011122332222222 332 2478999999999999999997
Q ss_pred -cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCC---------ccc---------------------C
Q 002778 79 -FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPV---------PQL---------------------A 124 (882)
Q Consensus 79 -f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~---------p~~---------------------~ 124 (882)
|.+.|++|+++| ++|.++.|.+++|||+.+.+++.++.-... ++. .
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCCh
Confidence 889999999997 567777889999999999888777642111 000 0
Q ss_pred CCCcccccccceeeEEcC--cEEEEeC--CCeEeccCCCCCCccCCC-----CCCCCCcCCCCCccEEE-----------
Q 002778 125 GQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTP-----SGVSPSTSPGGSSLVAR----------- 184 (882)
Q Consensus 125 ~~~~~g~~~~~g~lAlsp--R~LAyss--~~v~lwdtG~vs~q~lt~-----~~vs~s~SP~~GslVA~----------- 184 (882)
.+-..|.+....+++++| .+|-.++ ..+.-|+.|......+.+ .......+ .++.++-.
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-~~~~~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-ESGELFTIGWDDTLRVISL 391 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec-CCCcEEEEecCCeEEEEec
Confidence 000123344445556655 4443332 245567654222111111 00000000 00111100
Q ss_pred ----eeccchhhhhcc-----------c-----c------ccccccccccCCCC-CCCCccCCCccccccccccccCCCc
Q 002778 185 ----YAMEHSKQFAAG-----------L-----S------KTLSKYCQELLPDG-SSSPVSPNSVWKVGRHAGADMDNAG 237 (882)
Q Consensus 185 ----~A~essk~la~G-----------l-----i------ktLs~~~~~l~pdg-s~s~~S~ss~~k~~~la~~tgs~dG 237 (882)
|..+....+..+ + + +.+++ +.. .+-+ .......+++....+ .|++||
T Consensus 392 ~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-~~~-~~~~y~~s~vAv~~~~~~va----VGG~Dg 465 (603)
T KOG0318|consen 392 KDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-VSS-IPIGYESSAVAVSPDGSEVA----VGGQDG 465 (603)
T ss_pred ccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc-cee-eccccccceEEEcCCCCEEE----Eecccc
Confidence 000000000000 0 0 00000 000 0000 011112223333322 468999
Q ss_pred eEEEEECCCCc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 238 IVVVKDFVTRA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 238 ~V~VWDl~s~~--~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
.|+||.+.... ....+..|..+|++++|||||++||.++..+. +-+||+... ....-+.
T Consensus 466 kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk-vv~yd~~s~------------------~~~~~~w 526 (603)
T KOG0318|consen 466 KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK-VVLYDVASR------------------EVKTNRW 526 (603)
T ss_pred eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc-EEEEEcccC------------------ceeccee
Confidence 99999998654 33566789999999999999999999998665 779999642 2233335
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccc
Q 002778 316 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l 357 (882)
+++.++|.+|+||||.+.||+||.|.+|+||.++.......+
T Consensus 527 ~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i 568 (603)
T KOG0318|consen 527 AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII 568 (603)
T ss_pred eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEe
Confidence 667789999999999999999999999999999876655444
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.72 E-value=4.8e-16 Score=178.60 Aligned_cols=188 Identities=18% Similarity=0.204 Sum_probs=146.3
Q ss_pred ccCCeEEEEEC-CCCeEEEEEE-cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 58 NSPTAVRFYSF-QSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 58 ~sp~tVrlWDl-kTG~~V~tLk-f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
..+.+||+||+ ..+..+++++ |...|++++|++ ++|++| .|+.|+|||+++++++..|.+|..+
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~----------- 290 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG----------- 290 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc-----------
Confidence 46799999999 5569999998 999999999997 566665 5788999999999999999887652
Q ss_pred ccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 133 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 133 ~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
... +++..+. .+
T Consensus 291 --is~-------~~f~~d~----------------------------~~------------------------------- 302 (456)
T KOG0266|consen 291 --ISG-------LAFSPDG----------------------------NL------------------------------- 302 (456)
T ss_pred --eEE-------EEECCCC----------------------------CE-------------------------------
Confidence 122 3332211 10
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCC--eEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSP--ISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~--~v~~f~aH~sp--IsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
+. +++.||+|+|||+.++. ++..+..+..+ ++.++|+|+|.+|+++..|+ .+++||+.
T Consensus 303 -------------l~----s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~-~~~~w~l~ 364 (456)
T KOG0266|consen 303 -------------LV----SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR-TLKLWDLR 364 (456)
T ss_pred -------------EE----EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC-eEEEEEcc
Confidence 00 23568999999999998 67888887666 99999999999999999865 59999996
Q ss_pred CCcccCCCCCCccccCCcccEEEEEEecccCC--cEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccc
Q 002778 289 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 360 (882)
Q Consensus 289 p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a--~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H 360 (882)
. + ..+ ...+++... .+.+..++++++++.+++.|++|++|++.+......+.+|
T Consensus 365 ~-------~----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 365 S-------G----------KSV-GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred C-------C----------cce-eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 3 1 112 222455443 5667778999999999999999999999998777788888
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=3e-16 Score=181.46 Aligned_cols=187 Identities=21% Similarity=0.320 Sum_probs=139.9
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--C-EEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--R-IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--r-lLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+++|||||..+|-|+.|+. |.+.|.+|.|.. + +|..++|++|+.||+....+-+|+.. |.|. .
T Consensus 370 eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~-----------Q 437 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPI-----------Q 437 (893)
T ss_pred CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCce-----------e
Confidence 67999999999999999997 999999999975 3 44557899999999998888777743 3331 1
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
+..+|+.| + |.+|.. |
T Consensus 438 fscvavD~----------------------------------s-GelV~A---------------------------G-- 453 (893)
T KOG0291|consen 438 FSCVAVDP----------------------------------S-GELVCA---------------------------G-- 453 (893)
T ss_pred eeEEEEcC----------------------------------C-CCEEEe---------------------------e--
Confidence 22333221 0 111100 0
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccC
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 294 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~ 294 (882)
+-..=.|.||++.+|+.+-.+.+|.+||.+|+|+|+|++|||+|.|. +||+||+-..
T Consensus 454 ------------------~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk-TVRiW~if~s---- 510 (893)
T KOG0291|consen 454 ------------------AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK-TVRIWDIFSS---- 510 (893)
T ss_pred ------------------ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc-eEEEEEeecc----
Confidence 01113599999999999999999999999999999999999999965 5999999431
Q ss_pred CCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccc
Q 002778 295 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 359 (882)
Q Consensus 295 ~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~ 359 (882)
.| .+-++.- ...+.+++|+|||+-||+++.||.|.+||+......-++.+
T Consensus 511 -~~-----------~vEtl~i---~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 511 -SG-----------TVETLEI---RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred -Cc-----------eeeeEee---ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 11 2233321 24689999999999999999999999999987655444443
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.71 E-value=3.3e-16 Score=166.70 Aligned_cols=262 Identities=16% Similarity=0.153 Sum_probs=181.8
Q ss_pred ccccccccCccCCCCCcccc---cCCeEEEEEC-CCCeEEEEEE-cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCc
Q 002778 39 SHLGGVRDGMMDSQSGNCVN---SPTAVRFYSF-QSHCYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLE 110 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~~---sp~tVrlWDl-kTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e 110 (882)
||-|-+....+.+ .|.|+. +++.|-||+. ..-+...+++ |.++|..+.+++ .+|.++.|.+|+.||+.|++
T Consensus 45 gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 45 GHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred CCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence 4455554444444 455553 6789999995 3344555666 899999999986 35556678899999999999
Q ss_pred eeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCC--CeEeccCCCC-CCccCCCCCCCCCcCCCCCccEEEeec
Q 002778 111 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN--TLLLSNSGRL-SPQNLTPSGVSPSTSPGGSSLVARYAM 187 (882)
Q Consensus 111 ~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~--~v~lwdtG~v-s~q~lt~~~vs~s~SP~~GslVA~~A~ 187 (882)
+.+..++|..- +|. ..+.-++|..|...++ +++|||.-.- ..+.++.
T Consensus 124 ~~rk~k~h~~~---------vNs-~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-------------------- 173 (338)
T KOG0265|consen 124 RIRKHKGHTSF---------VNS-LDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-------------------- 173 (338)
T ss_pred eeehhccccce---------eee-cCccccCCeEEEecCCCceEEEEeecccchhhcccc--------------------
Confidence 99999887652 121 1244556677776643 7889984110 0111100
Q ss_pred cchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC
Q 002778 188 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP 267 (882)
Q Consensus 188 essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP 267 (882)
+|.. .++.++..+... -+|..|+.|++||+..+..+.++.+|.++|..|..+|
T Consensus 174 ---------------kyql--------tAv~f~d~s~qv----~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~ 226 (338)
T KOG0265|consen 174 ---------------KYQL--------TAVGFKDTSDQV----ISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR 226 (338)
T ss_pred ---------------ceeE--------EEEEecccccce----eeccccCceeeeccccCcceEEeecccCceeeEEecc
Confidence 0000 001111000000 1467899999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC--cEEEEEEccCCCEEEEEeCCCeEEE
Q 002778 268 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 268 dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a--~I~sLaFSPDg~~LAsgS~DGTVhI 345 (882)
+|..|.+-+-|- ++++||++|. ....+++..+..+.++- .....+|||+++++.++|.|..++|
T Consensus 227 ~gs~llsnsMd~-tvrvwd~rp~-------------~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyv 292 (338)
T KOG0265|consen 227 YGSFLLSNSMDN-TVRVWDVRPF-------------APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYV 292 (338)
T ss_pred CCCccccccccc-eEEEEEeccc-------------CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEE
Confidence 999999999855 5999999873 22234566554443332 2456799999999999999999999
Q ss_pred EECCCCCCccccccccCCCCCCcccCC
Q 002778 346 FVLSPFGGDSGFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 346 WdI~~~gg~~~l~~H~~~~~~~~~sp~ 372 (882)
||....+....+-+|..++....++|-
T Consensus 293 wd~~~r~~lyklpGh~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 293 WDTTSRRILYKLPGHYGSVNEVDFHPT 319 (338)
T ss_pred eecccccEEEEcCCcceeEEEeeecCC
Confidence 999888888889999877777666664
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.71 E-value=1.3e-16 Score=172.46 Aligned_cols=232 Identities=19% Similarity=0.226 Sum_probs=166.0
Q ss_pred ccccccccCccCCCCCccc--ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCC---EEEEEECCeEEEEECCCCcee
Q 002778 39 SHLGGVRDGMMDSQSGNCV--NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR---IVAVGLATQIYCFDALTLENK 112 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~--~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~r---lLAV~~d~qI~IWDa~T~e~l 112 (882)
||+|=||..-.++.|.=.+ ..+++++|||+.||+...+|. |-..|+.|+++.+ ++.++.|++|+|||+...+.+
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvI 228 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVI 228 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhH
Confidence 6777776666665542111 268999999999999999998 8899999999863 455566889999999998887
Q ss_pred EEEecCCCcccCCCCcccccccceeeEEcC--cEEEEeC--CCeEeccC-CCCCCccCCCCCCCCCcCCCCCccEEEeec
Q 002778 113 FSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSNS-GRLSPQNLTPSGVSPSTSPGGSSLVARYAM 187 (882)
Q Consensus 113 ~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAyss--~~v~lwdt-G~vs~q~lt~~~vs~s~SP~~GslVA~~A~ 187 (882)
+...+|-. +.-.+++-| +.|+.++ ...++||. .+.+...|.+. ...|+++..
T Consensus 229 R~YhGHlS-------------~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH----------~~~V~~V~~ 285 (460)
T KOG0285|consen 229 RHYHGHLS-------------GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH----------TNPVASVMC 285 (460)
T ss_pred HHhccccc-------------eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC----------CCcceeEEe
Confidence 76666544 234566666 6677665 36889984 22222212110 001111110
Q ss_pred cchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC
Q 002778 188 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP 267 (882)
Q Consensus 188 essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP 267 (882)
...++ ++ .+++.|++|++||+..++...++..|...|.||+.+|
T Consensus 286 -----------------------------~~~dp--qv-----it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP 329 (460)
T KOG0285|consen 286 -----------------------------QPTDP--QV-----ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP 329 (460)
T ss_pred -----------------------------ecCCC--ce-----EEecCCceEEEeeeccCceeEeeecccceeeEEecCC
Confidence 00111 11 1678999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 268 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 268 dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
.-.++|+||.| +|+-|++.. | ..+..+ .|+ ++.|.+|+-..|+ ++++|+++|++..||
T Consensus 330 ~e~~fASas~d--nik~w~~p~-------g----------~f~~nl-sgh-~~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 330 KENLFASASPD--NIKQWKLPE-------G----------EFLQNL-SGH-NAIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred chhhhhccCCc--cceeccCCc-------c----------chhhcc-ccc-cceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 99999999984 499999932 3 234443 343 4689999998887 778999999999999
Q ss_pred CCCC
Q 002778 348 LSPF 351 (882)
Q Consensus 348 I~~~ 351 (882)
...+
T Consensus 388 wksg 391 (460)
T KOG0285|consen 388 WKSG 391 (460)
T ss_pred cCcC
Confidence 8764
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.70 E-value=3.9e-16 Score=173.46 Aligned_cols=219 Identities=16% Similarity=0.225 Sum_probs=158.3
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.++.+|+|+. +|..+.+|. |+++|.++++++ .+|++ +-|+++.+||+.+++....+..+..|.
T Consensus 255 ~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~------------ 321 (524)
T KOG0273|consen 255 EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA------------ 321 (524)
T ss_pred cCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc------------
Confidence 5799999996 788888886 889999999997 34544 568899999999998877776555431
Q ss_pred ceeeEEcCcEE-----EEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccC
Q 002778 135 YGPMAVGPRWL-----AYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 135 ~g~lAlspR~L-----Ayss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~ 209 (882)
+.-.|+ |.++. ++.-.|.++. ..+..+++.+|..
T Consensus 322 -----lDVdW~~~~~F~ts~t--------------------------d~~i~V~kv~-------~~~P~~t~~GH~g--- 360 (524)
T KOG0273|consen 322 -----LDVDWQSNDEFATSST--------------------------DGCIHVCKVG-------EDRPVKTFIGHHG--- 360 (524)
T ss_pred -----cceEEecCceEeecCC--------------------------CceEEEEEec-------CCCcceeeecccC---
Confidence 111222 11111 1000011111 1122345555442
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC---------CEEEEEEcCCC
Q 002778 210 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG---------TLLVTASVYGN 280 (882)
Q Consensus 210 pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdG---------tlLATAS~dGt 280 (882)
..+++-.++.+.+++ +++.|++++||..........|++|...|..+.++|+| ..||+++.|++
T Consensus 361 ---~V~alk~n~tg~LLa----S~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst 433 (524)
T KOG0273|consen 361 ---EVNALKWNPTGSLLA----SCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST 433 (524)
T ss_pred ---ceEEEEECCCCceEE----EecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence 234445566666654 56899999999999888999999999999999999965 58999999765
Q ss_pred EEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccc
Q 002778 281 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 281 ~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~ 358 (882)
+++||+.. | +++++|.++ ..+|++|+|||||+|||+|+.||.||||++..+.-....+
T Consensus 434 -V~lwdv~~-------g----------v~i~~f~kH--~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 434 -VKLWDVES-------G----------VPIHTLMKH--QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred -EEEEEccC-------C----------ceeEeeccC--CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence 89999974 4 578888653 4689999999999999999999999999998765544433
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=2.9e-16 Score=181.42 Aligned_cols=264 Identities=18% Similarity=0.167 Sum_probs=177.8
Q ss_pred cCCeEEEEECCCCeEEEEEEcC-C----cEEEEEEcCCEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFR-S----SVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~-s----~V~sV~~S~rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
..+++++||.++++++...+-+ + .+..+.-+.+++++..+++|.+||..+++....+.++....
T Consensus 258 ~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI----------- 326 (775)
T KOG0319|consen 258 GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI----------- 326 (775)
T ss_pred CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhh-----------
Confidence 5688999999999988776533 1 12223334588888999999999999999888887765421
Q ss_pred cceeeEEcC--cEEEEeCCC--eEeccCCCCCCccCCCC---CCCCCcCCCCCccEEEeeccchhhhhc---c-----cc
Q 002778 134 GYGPMAVGP--RWLAYASNT--LLLSNSGRLSPQNLTPS---GVSPSTSPGGSSLVARYAMEHSKQFAA---G-----LS 198 (882)
Q Consensus 134 ~~g~lAlsp--R~LAyss~~--v~lwdtG~vs~q~lt~~---~vs~s~SP~~GslVA~~A~essk~la~---G-----li 198 (882)
+....+|| ++||.+.|. +++.+.-....|.+.+. ..++.. .+.|.+++...+|.+..+.. + ++
T Consensus 327 -~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~-~~~g~llat~sKD~svilWr~~~~~~~~~~~ 404 (775)
T KOG0319|consen 327 -LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDV-WSSGDLLATGSKDKSVILWRLNNNCSKSLCV 404 (775)
T ss_pred -eeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeee-cccCcEEEEecCCceEEEEEecCCcchhhhh
Confidence 23345576 888888764 44544322223333331 123331 13456777777775543331 1 11
Q ss_pred ccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc-----EE----EEeccCCCCeEEEEECCCC
Q 002778 199 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-----II----SQFKAHTSPISALCFDPSG 269 (882)
Q Consensus 199 ktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~-----~v----~~f~aH~spIsaLaFSPdG 269 (882)
+..++|-..+. .+..+ +.++....++++|+++++|++..-+ .+ .+.++|...|++++.+|+.
T Consensus 405 a~~~gH~~svg------ava~~---~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 405 AQANGHTNSVG------AVAGS---KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred hhhcccccccc------eeeec---ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 22233322211 11111 1111111267999999999997511 11 2446899999999999999
Q ss_pred CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 270 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 270 tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
.++||||.|. +.+||++.. + .++..| +||++ .|+||.|||.++.||++|.|+||+||.|+
T Consensus 476 kLiAT~SqDk-taKiW~le~-------~----------~l~~vL-sGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 476 KLIATGSQDK-TAKIWDLEQ-------L----------RLLGVL-SGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred ceEEeccccc-ceeeecccC-------c----------eEEEEe-eCCcc-ceEEEEeccccceeEeccCCceEEEEEec
Confidence 9999999965 599999952 2 356666 68876 59999999999999999999999999999
Q ss_pred CCCCccccccccCCC
Q 002778 350 PFGGDSGFQTLSSQG 364 (882)
Q Consensus 350 ~~gg~~~l~~H~~~~ 364 (882)
++.+..+|.+|.+.+
T Consensus 536 ~fSClkT~eGH~~aV 550 (775)
T KOG0319|consen 536 TFSCLKTFEGHTSAV 550 (775)
T ss_pred cceeeeeecCcccee
Confidence 999999999998544
No 24
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.68 E-value=5.1e-17 Score=174.94 Aligned_cols=212 Identities=17% Similarity=0.165 Sum_probs=155.0
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCCEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
-++||+|||.++-++++.|. |.+.|..+.+..+++++|. |.+|+|||+.|++.+.++..|... .-
T Consensus 215 rDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHcea-------------VL 281 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA-------------VL 281 (499)
T ss_pred ccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcce-------------eE
Confidence 46999999999999999886 8999999999999888875 678999999999999998776541 11
Q ss_pred eeEEcCcEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 137 PMAVGPRWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 137 ~lAlspR~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
-+-|+..++...+ .++.+|+.. +|.. ....++ |-++... .
T Consensus 282 hlrf~ng~mvtcSkDrsiaVWdm~----------------sps~---------it~rrV-------LvGHrAa------V 323 (499)
T KOG0281|consen 282 HLRFSNGYMVTCSKDRSIAVWDMA----------------SPTD---------ITLRRV-------LVGHRAA------V 323 (499)
T ss_pred EEEEeCCEEEEecCCceeEEEecc----------------CchH---------HHHHHH-------Hhhhhhh------e
Confidence 2344555565554 367788741 1110 011111 1122111 0
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccC
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 294 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~ 294 (882)
....+ +.+++. +++.|.+|++|++.+++.+.++.+|...|.|+.+ .|+++++||.|. +||+||+..
T Consensus 324 NvVdf--d~kyIV----sASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDn-tIRlwdi~~----- 389 (499)
T KOG0281|consen 324 NVVDF--DDKYIV----SASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN-TIRLWDIEC----- 389 (499)
T ss_pred eeecc--ccceEE----EecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCc-eEEEEeccc-----
Confidence 01111 234443 5678999999999999999999999999999987 589999999955 599999963
Q ss_pred CCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 295 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 295 ~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
| .++..| .|+. .-|.+|.| |.+.|++|.-||+|+|||+...
T Consensus 390 --G----------~cLRvL-eGHE-eLvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 390 --G----------ACLRVL-EGHE-ELVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred --c----------HHHHHH-hchH-Hhhhheee--cCceeeeccccceEEEEecccc
Confidence 4 455555 4665 46999999 6789999999999999999864
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.68 E-value=9.9e-15 Score=146.08 Aligned_cols=224 Identities=18% Similarity=0.210 Sum_probs=154.5
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
++.|++||+.+++....+. +...+..+.+.+ +.|+++. ++.|++||+.+++.+..+..+..+ .
T Consensus 30 ~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-------------i 96 (289)
T cd00200 30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY-------------V 96 (289)
T ss_pred CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc-------------E
Confidence 6889999999998887776 667888999886 3666654 789999999988777777654431 2
Q ss_pred eeeEEcC--cEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 136 GPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 136 g~lAlsp--R~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
..+++.+ ++++... ..+.+|+... +..+..+. .+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------------~~~~~~~~----------------~~~------ 135 (289)
T cd00200 97 SSVAFSPDGRILSSSSRDKTIKVWDVET-------------------GKCLTTLR----------------GHT------ 135 (289)
T ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCC-------------------cEEEEEec----------------cCC------
Confidence 3456666 5666554 3577776420 00000000 000
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
+....+..++....+. .+..+|.|++||+.+++.+..+..|..+|.+++|+|+|+.|++++.+|. |++||+..
T Consensus 136 ~~i~~~~~~~~~~~l~----~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~-- 208 (289)
T cd00200 136 DWVNSVAFSPDGTFVA----SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLST-- 208 (289)
T ss_pred CcEEEEEEcCcCCEEE----EEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCC--
Confidence 0001111222223322 2346899999999999999999999999999999999999999998665 89999953
Q ss_pred ccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccccc
Q 002778 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 361 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~ 361 (882)
+ ..+..+. ++ ...|.+++|+|++.++++++.+|++++|++........+..|.
T Consensus 209 -----~----------~~~~~~~-~~-~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 209 -----G----------KCLGTLR-GH-ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred -----C----------ceecchh-hc-CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence 2 2333331 32 3479999999999999999989999999998765555555554
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.68 E-value=3.6e-15 Score=158.44 Aligned_cols=205 Identities=16% Similarity=0.206 Sum_probs=139.0
Q ss_pred EEEE-cCCcEEEEEEcC--CEEE-EEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC--cEEEEe
Q 002778 75 HVLR-FRSSVCMVRCSP--RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYA 148 (882)
Q Consensus 75 ~tLk-f~s~V~sV~~S~--rlLA-V~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAys 148 (882)
++|+ |-+.|+++.+++ ++|+ .++|+.+.|||.-|....+-+..... .+=.+|++| +++|..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~-------------WVMtCA~sPSg~~VAcG 115 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-------------WVMTCAYSPSGNFVACG 115 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCce-------------eEEEEEECCCCCeEEec
Confidence 6787 889999999975 4444 46789999999998887777743222 112344455 555544
Q ss_pred C--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccc--cCCCCCCCCccCCCccc
Q 002778 149 S--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE--LLPDGSSSPVSPNSVWK 224 (882)
Q Consensus 149 s--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~--l~pdgs~s~~S~ss~~k 224 (882)
+ +...|. ++++ +++.. ++...+ .+...++|.+. ++.++ .
T Consensus 116 GLdN~Csiy---------------~ls~-~d~~g-~~~v~r---------~l~gHtgylScC~f~dD~-----------~ 158 (343)
T KOG0286|consen 116 GLDNKCSIY---------------PLST-RDAEG-NVRVSR---------ELAGHTGYLSCCRFLDDN-----------H 158 (343)
T ss_pred CcCceeEEE---------------eccc-ccccc-cceeee---------eecCccceeEEEEEcCCC-----------c
Confidence 3 111111 1110 00000 000000 01112333322 22222 1
Q ss_pred cccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc
Q 002778 225 VGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 225 ~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ 303 (882)
. + +++.|.++-+||+++++.+..|.+|.+.|.+|+++| +++.++|++.|.+ .+|||+.. |
T Consensus 159 i--l---T~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~-aklWD~R~-------~------ 219 (343)
T KOG0286|consen 159 I--L---TGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS-AKLWDVRS-------G------ 219 (343)
T ss_pred e--E---ecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc-eeeeeccC-------c------
Confidence 1 1 567899999999999999999999999999999999 9999999999765 89999964 3
Q ss_pred CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 304 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 304 sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
.+++.|. |+. ..|.+|+|-|+|.-+|+||+|+|+++|||......
T Consensus 220 ----~c~qtF~-ghe-sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 220 ----QCVQTFE-GHE-SDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL 264 (343)
T ss_pred ----ceeEeec-ccc-cccceEEEccCCCeeeecCCCceeEEEeecCCcEE
Confidence 4666764 655 57999999999999999999999999999875443
No 27
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.68 E-value=8.9e-15 Score=171.04 Aligned_cols=185 Identities=17% Similarity=0.160 Sum_probs=152.2
Q ss_pred cCCeEEEEECCCCeEEEE-EE-cCCcEEEEEEc--CCEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHV-LR-FRSSVCMVRCS--PRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~t-Lk-f~s~V~sV~~S--~rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+.+|++||..++..+.+ +. |.+.|+++++. .++|+.|. |.++++||+.++++.+++.+|+..
T Consensus 226 ~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st------------ 293 (537)
T KOG0274|consen 226 DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS------------ 293 (537)
T ss_pred CCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce------------
Confidence 468899999999999988 76 89999999998 67877776 889999999999999999887661
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
...+.+.+..
T Consensus 294 -v~~~~~~~~~--------------------------------------------------------------------- 303 (537)
T KOG0274|consen 294 -VRCLTIDPFL--------------------------------------------------------------------- 303 (537)
T ss_pred -EEEEEccCce---------------------------------------------------------------------
Confidence 0111110000
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
+. +|+.|.+|+|||+.+++.+..+.+|..+|.++.++ +.+|++++.|| .|+|||+.+
T Consensus 304 --------------~~--sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~-~v~VW~~~~---- 360 (537)
T KOG0274|consen 304 --------------LV--SGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDG-TVKVWDPRT---- 360 (537)
T ss_pred --------------Ee--eccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCc-eEEEEEhhh----
Confidence 00 24578999999999999999999999999999998 88999999988 599999975
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC-CCccccccccCCC
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF-GGDSGFQTLSSQG 364 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~-gg~~~l~~H~~~~ 364 (882)
+ +.++.| +||+ ..|+++.|... ..+.+||.|++|++||+... .+..++.+|.+-+
T Consensus 361 ---~----------~cl~sl-~gH~-~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 361 ---G----------KCLKSL-SGHT-GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred ---c----------eeeeee-cCCc-ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc
Confidence 3 577777 5765 57999988766 89999999999999999998 8888999997533
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.67 E-value=1.3e-14 Score=176.81 Aligned_cols=222 Identities=13% Similarity=0.088 Sum_probs=146.2
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+++|+|||+.+++.+..++ |...|++|+|++ .+|+++. |+.|++||+.+++.+.++..+..
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~------------- 619 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN------------- 619 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC-------------
Confidence 57999999999999999987 888999999974 4676654 67899999999998888764321
Q ss_pred cceeeEEc---CcEEEEeC--CCeEeccCCCC--CCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 134 GYGPMAVG---PRWLAYAS--NTLLLSNSGRL--SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 134 ~~g~lAls---pR~LAyss--~~v~lwdtG~v--s~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
...+++. ..+||+++ ..+.+|+.... ....+.. ....|
T Consensus 620 -v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~----------h~~~V------------------------ 664 (793)
T PLN00181 620 -ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG----------HSKTV------------------------ 664 (793)
T ss_pred -eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC----------CCCCE------------------------
Confidence 1234442 26777664 46888985211 0000000 00000
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGN 280 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s------~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt 280 (882)
..+.+. ++..+. +++.||+|+|||+.. .+.+..|.+|...+..++|+|+|.+||+|+.||+
T Consensus 665 --------~~v~f~-~~~~lv----s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 665 --------SYVRFV-DSSTLV----SSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred --------EEEEEe-CCCEEE----EEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE
Confidence 000111 112221 457899999999974 3568899999999999999999999999999775
Q ss_pred EEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 281 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 281 ~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
|+||+..... ........ ....+..+.-..+...|.+++|+|++..|++++.||+|+||++
T Consensus 732 -v~iw~~~~~~-----~~~s~~~~-~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 732 -VFVYHKAFPM-----PVLSYKFK-TIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred -EEEEECCCCC-----ceEEEecc-cCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 8999974210 00000000 0000000000112246999999999999999999999999997
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.66 E-value=6.1e-15 Score=164.06 Aligned_cols=225 Identities=20% Similarity=0.255 Sum_probs=161.4
Q ss_pred Cccc---ccCCeEEEEECCCCeEEEEEEcCCcE-EEEEEcC-CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCC
Q 002778 54 GNCV---NSPTAVRFYSFQSHCYEHVLRFRSSV-CMVRCSP-RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQG 127 (882)
Q Consensus 54 ~~~~---~sp~tVrlWDlkTG~~V~tLkf~s~V-~sV~~S~-rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~ 127 (882)
|+++ ..++++.+||..+|+.-..+.|.+.. .+|.+-. +-+|++ .+..|+|+.+.--....++.+|.++
T Consensus 288 G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~------ 361 (524)
T KOG0273|consen 288 GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE------ 361 (524)
T ss_pred CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc------
Confidence 5555 36799999999999999999987766 8888754 555554 5778999999888888899888774
Q ss_pred cccccccceeeEEcC--cEEEEeCC--CeEeccCCCCC-CccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccc
Q 002778 128 AVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLS-PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLS 202 (882)
Q Consensus 128 ~~g~~~~~g~lAlsp--R~LAyss~--~v~lwdtG~vs-~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs 202 (882)
.+.+-+.| ..||.+++ +++||+.|.-- ...|... +|. ++ ++
T Consensus 362 -------V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H---------------------ske----i~-t~- 407 (524)
T KOG0273|consen 362 -------VNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH---------------------SKE----IY-TI- 407 (524)
T ss_pred -------eEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh---------------------ccc----ee-eE-
Confidence 35677776 78888764 79999864211 0111100 000 00 00
Q ss_pred ccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEE
Q 002778 203 KYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNI 282 (882)
Q Consensus 203 ~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~I 282 (882)
.-.|.+. .-.++ +....++ ++..|++|++||+..+.++..|..|+.||.+|+|+|+|++||+++.||. |
T Consensus 408 ----~wsp~g~---v~~n~-~~~~~l~--sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~-V 476 (524)
T KOG0273|consen 408 ----KWSPTGP---VTSNP-NMNLMLA--SASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC-V 476 (524)
T ss_pred ----eecCCCC---ccCCC-cCCceEE--EeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe-e
Confidence 0011110 00011 1111111 5678999999999999999999999999999999999999999999775 8
Q ss_pred EEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 283 rVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
+||++.. | .+++-.+|. ..|..|+|+.+|.+|+++-+||.+.+-|+.
T Consensus 477 ~iws~~~-------~-----------~l~~s~~~~--~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 477 HIWSTKT-------G-----------KLVKSYQGT--GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred Eeccccc-------h-----------heeEeecCC--CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999964 3 455555553 469999999999999999999999998874
No 30
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.65 E-value=7.9e-15 Score=155.10 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=105.8
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++-||++++||+.+++...+|.+|+.-|.+++|+||.+.++|+|.|. +|++|++. | .+.|
T Consensus 80 S~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk-Tiklwnt~--------g----------~ck~ 140 (315)
T KOG0279|consen 80 SASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK-TIKLWNTL--------G----------VCKY 140 (315)
T ss_pred eccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc-eeeeeeec--------c----------cEEE
Confidence 457899999999999999999999999999999999999999999955 59999995 3 4788
Q ss_pred EEEecccCCcEEEEEEccC--CCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCC
Q 002778 312 KLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPD--g~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~ 372 (882)
++.++..+..|.++.|+|. .-+|+++|.|+||+|||+....-..++-+|+..+....++|-
T Consensus 141 t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 141 TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCC
Confidence 8877764678999999998 789999999999999999998888888888865554445543
No 31
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.63 E-value=1e-15 Score=170.60 Aligned_cols=217 Identities=13% Similarity=0.096 Sum_probs=154.7
Q ss_pred cCCeEEEEECCC-CeEEEEEE-cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQS-HCYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkT-G~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+++|+||++.. +.+++++. |.-+|++++|+. ++|.+++|..|++||+.||+++.++.+...|
T Consensus 235 mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~------------ 302 (503)
T KOG0282|consen 235 MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVP------------ 302 (503)
T ss_pred CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCc------------
Confidence 578999999987 99999998 788999999986 6888899999999999999999888653221
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
..+. |.+ ++-- .+
T Consensus 303 --~cvk-------f~p---------------------------d~~n--------------------------~f----- 315 (503)
T KOG0282|consen 303 --TCVK-------FHP---------------------------DNQN--------------------------IF----- 315 (503)
T ss_pred --eeee-------cCC---------------------------CCCc--------------------------EE-----
Confidence 1111 111 1100 00
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc-
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM- 292 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~- 292 (882)
+ .|..|+.|+.||+.++++++....|-++|..+.|=++|+.++|+|.+++ ++||+......
T Consensus 316 --------------l---~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks-~riWe~~~~v~i 377 (503)
T KOG0282|consen 316 --------------L---VGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS-VRIWENRIPVPI 377 (503)
T ss_pred --------------E---EecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc-EEEEEcCCCccc
Confidence 1 2456899999999999999999999999999999999999999998765 89999753210
Q ss_pred cC---------------CCC----CCccccCC---cccE-----EEEEEecccCC-cEEEEEEccCCCEEEEEeCCCeEE
Q 002778 293 RS---------------GSG----NHKYDWNS---SHVH-----LYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCH 344 (882)
Q Consensus 293 ~~---------------~sG----~~~~d~ss---s~~~-----l~~L~RG~t~a-~I~sLaFSPDg~~LAsgS~DGTVh 344 (882)
.. -.+ +++.+..- +... .++..+|+..+ --..+.|||||++|++|+.||.+.
T Consensus 378 k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 378 KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred hhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE
Confidence 00 000 00010000 0000 11112344322 235689999999999999999999
Q ss_pred EEECCCCCCccccccccCCCCCCcccCC
Q 002778 345 VFVLSPFGGDSGFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 345 IWdI~~~gg~~~l~~H~~~~~~~~~sp~ 372 (882)
+||..+.....++.+|+....+...+|.
T Consensus 458 ~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred EeechhhhhhhccccCCcceEEEEecCC
Confidence 9999999888899999765555555553
No 32
>PTZ00421 coronin; Provisional
Probab=99.63 E-value=6.4e-14 Score=162.80 Aligned_cols=201 Identities=13% Similarity=0.099 Sum_probs=139.7
Q ss_pred ccccccccCccCCCCCccc---ccCCeEEEEECCCCe-------EEEEEE-cCCcEEEEEEcC---CEEEEE-ECCeEEE
Q 002778 39 SHLGGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHC-------YEHVLR-FRSSVCMVRCSP---RIVAVG-LATQIYC 103 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~---~sp~tVrlWDlkTG~-------~V~tLk-f~s~V~sV~~S~---rlLAV~-~d~qI~I 103 (882)
||.+.|.+....+.+++.+ ..+++|++||+.++. .+.+|. |...|..|+|++ .+|+++ .|+.|+|
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 5666676666555455544 357999999998763 456665 788999999986 467765 4788999
Q ss_pred EECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEE
Q 002778 104 FDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVA 183 (882)
Q Consensus 104 WDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA 183 (882)
||+.+++.+.++..|..+ ... |++..+ |.++
T Consensus 153 WDl~tg~~~~~l~~h~~~-------------V~s-------la~spd----------------------------G~lL- 183 (493)
T PTZ00421 153 WDVERGKAVEVIKCHSDQ-------------ITS-------LEWNLD----------------------------GSLL- 183 (493)
T ss_pred EECCCCeEEEEEcCCCCc-------------eEE-------EEEECC----------------------------CCEE-
Confidence 999999888877665441 122 333221 1110
Q ss_pred EeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCe-EE
Q 002778 184 RYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI-SA 262 (882)
Q Consensus 184 ~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spI-sa 262 (882)
+ +++.||+|+|||+.+++.+..+.+|...+ ..
T Consensus 184 -------------------------------------------a----tgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 184 -------------------------------------------C----TTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR 216 (493)
T ss_pred -------------------------------------------E----EecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence 0 34678999999999999999999998764 46
Q ss_pred EEECCCCCEEEEEEc---CCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEe-
Q 002778 263 LCFDPSGTLLVTASV---YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS- 338 (882)
Q Consensus 263 LaFSPdGtlLATAS~---dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS- 338 (882)
+.|.+++.+|+|++. .+..|+|||+... . ..+... .......+....|++|+++|++++
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~------~----------~p~~~~-~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKM------A----------SPYSTV-DLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCC------C----------CceeEe-ccCCCCceEEEEEcCCCCEEEEEEe
Confidence 789999888887653 1346999999531 0 122221 112223566778999999999887
Q ss_pred CCCeEEEEECCCCC
Q 002778 339 SKGTCHVFVLSPFG 352 (882)
Q Consensus 339 ~DGTVhIWdI~~~g 352 (882)
.|++|++|++....
T Consensus 280 gDg~Iriwdl~~~~ 293 (493)
T PTZ00421 280 GEGNIRCFELMNER 293 (493)
T ss_pred CCCeEEEEEeeCCc
Confidence 59999999998643
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=4e-15 Score=169.50 Aligned_cols=220 Identities=15% Similarity=0.154 Sum_probs=161.8
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEEC-CeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~d-~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
.+.|.||+-.|...|++++ ..-+|++.+|-. +.+++|.| .+|+||+..|++.++++..|+.= .
T Consensus 34 nG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy-------------I 100 (794)
T KOG0276|consen 34 NGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY-------------I 100 (794)
T ss_pred cCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc-------------e
Confidence 4679999999999999998 667899988853 67888765 58999999999999999988761 3
Q ss_pred eeeEEcC--cEEEEeCC--CeEeccC-CC-CCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccC
Q 002778 136 GPMAVGP--RWLAYASN--TLLLSNS-GR-LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 136 g~lAlsp--R~LAyss~--~v~lwdt-G~-vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~ 209 (882)
..+++.| -++-.+++ .+++|+= +. ...| ++.+|..-.+
T Consensus 101 R~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q------------------------------------tfeGH~HyVM 144 (794)
T KOG0276|consen 101 RSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ------------------------------------TFEGHEHYVM 144 (794)
T ss_pred eeeeecCCCCeEEecCCccEEEEeeccCceeeee------------------------------------EEcCcceEEE
Confidence 5677777 34444443 5677762 11 1111 2222211100
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC--CEEEEEEcCCCEEEEEec
Q 002778 210 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG--TLLVTASVYGNNINIFRI 287 (882)
Q Consensus 210 pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdG--tlLATAS~dGt~IrVWdi 287 (882)
.+.+||- ....++ +++-|++|+||.+.+..+..+|.+|...|+++.|=+-| -+|+||+. +.+|+|||.
T Consensus 145 ------qv~fnPk-D~ntFa--S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD-D~tiKvWDy 214 (794)
T KOG0276|consen 145 ------QVAFNPK-DPNTFA--SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD-DLTIKVWDY 214 (794)
T ss_pred ------EEEecCC-Ccccee--eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC-CceEEEeec
Confidence 0111110 001122 57889999999999999999999999999999998876 48999987 677999999
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccc
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l 357 (882)
.+. .++.+| .||++ .|..+.|.|.=.+|++||.|||++||.-.++..+.++
T Consensus 215 Qtk-----------------~CV~TL-eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 215 QTK-----------------SCVQTL-EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred chH-----------------HHHHHh-hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 641 356666 47775 5999999999999999999999999999988766554
No 34
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=3e-15 Score=167.13 Aligned_cols=220 Identities=19% Similarity=0.215 Sum_probs=153.2
Q ss_pred ccccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEc--CCEEEEEEC-CeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 56 CVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCS--PRIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 56 ~~~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S--~rlLAV~~d-~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
++.+...|.||+..+...++++. |...|+++.|. +++||+|.+ +-|+|||..+...++++..|..|.
T Consensus 43 aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv--------- 113 (487)
T KOG0310|consen 43 AVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPV--------- 113 (487)
T ss_pred EEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCce---------
Confidence 55677899999999999888875 99999999997 688888864 569999977755667777776652
Q ss_pred cccceeeEEcC---cEEEEeCC--CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 132 NVGYGPMAVGP---RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 132 ~~~~g~lAlsp---R~LAyss~--~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
...-|.| ..++++++ .+++|+... +...+ .++++-.
T Consensus 114 ----~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-------------------a~v~~----------------~l~~htD 154 (487)
T KOG0310|consen 114 ----HVTKFSPQDNTMLVSGSDDKVVKYWDLST-------------------AYVQA----------------ELSGHTD 154 (487)
T ss_pred ----eEEEecccCCeEEEecCCCceEEEEEcCC-------------------cEEEE----------------EecCCcc
Confidence 2344444 45566654 356776411 11000 1111110
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
+...+..++ ...-+.+ +|+.||+|++||+.+. ..+..| .|..||..+.|=|+|+++|||+ |..++||
T Consensus 155 -YVR~g~~~~-----~~~hivv---tGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg--Gn~vkVW 222 (487)
T KOG0310|consen 155 -YVRCGDISP-----ANDHIVV---TGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG--GNSVKVW 222 (487)
T ss_pred -eeEeecccc-----CCCeEEE---ecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC--CCeEEEE
Confidence 111111111 1111111 6899999999999987 455555 4899999999999999999998 7889999
Q ss_pred ecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
|+.. |. +.+..+ ..++..|+||++..|++.|.+++.|+.|+|||+..++-
T Consensus 223 Dl~~-------G~---------qll~~~--~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 223 DLTT-------GG---------QLLTSM--FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred EecC-------Cc---------eehhhh--hcccceEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 9954 31 233332 33456799999999999999999999999999887653
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.62 E-value=4.5e-14 Score=172.24 Aligned_cols=218 Identities=14% Similarity=0.077 Sum_probs=147.9
Q ss_pred cCCeEEEEECCC----Ce----EEEEEEcCCcEEEEEEcC---CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCC
Q 002778 59 SPTAVRFYSFQS----HC----YEHVLRFRSSVCMVRCSP---RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQ 126 (882)
Q Consensus 59 sp~tVrlWDlkT----G~----~V~tLkf~s~V~sV~~S~---rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~ 126 (882)
.+++|+|||+.+ +. .+..+.+.+.|.++++++ .+||++ .++.|+|||+.+++.+.++..|..+
T Consensus 503 ~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~----- 577 (793)
T PLN00181 503 VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR----- 577 (793)
T ss_pred CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC-----
Confidence 578999999854 21 233445667889999874 566665 5789999999999888888776552
Q ss_pred CcccccccceeeEEcC---cEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccc
Q 002778 127 GAVGINVGYGPMAVGP---RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTL 201 (882)
Q Consensus 127 ~~~g~~~~~g~lAlsp---R~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktL 201 (882)
...+++.| .+|+.++ ..+++|+... +..+..+...
T Consensus 578 --------V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-------------------~~~~~~~~~~------------- 617 (793)
T PLN00181 578 --------VWSIDYSSADPTLLASGSDDGSVKLWSINQ-------------------GVSIGTIKTK------------- 617 (793)
T ss_pred --------EEEEEEcCCCCCEEEEEcCCCEEEEEECCC-------------------CcEEEEEecC-------------
Confidence 35677764 5777664 3689998521 1111100000
Q ss_pred cccccccCCCCCCCCccC-CCccccccccccccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCC
Q 002778 202 SKYCQELLPDGSSSPVSP-NSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYG 279 (882)
Q Consensus 202 s~~~~~l~pdgs~s~~S~-ss~~k~~~la~~tgs~dG~V~VWDl~s~~-~v~~f~aH~spIsaLaFSPdGtlLATAS~dG 279 (882)
.....+.+ .+++..++ +++.||.|++||+.+.+ .+..+.+|..+|.+++|. ++.+|+|++.|+
T Consensus 618 ----------~~v~~v~~~~~~g~~la----tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~ 682 (793)
T PLN00181 618 ----------ANICCVQFPSESGRSLA----FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDN 682 (793)
T ss_pred ----------CCeEEEEEeCCCCCEEE----EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCC
Confidence 00000011 11123322 46789999999998765 567889999999999997 788999999977
Q ss_pred CEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 280 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 280 t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
+ |+|||+..... + . ....+..+ .|+. ..|..++|+|++++||+|+.|++|+||+...
T Consensus 683 ~-ikiWd~~~~~~----~---~----~~~~l~~~-~gh~-~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 683 T-LKLWDLSMSIS----G---I----NETPLHSF-MGHT-NVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred E-EEEEeCCCCcc----c---c----CCcceEEE-cCCC-CCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 5 99999964100 0 0 01234454 3654 4689999999999999999999999999753
No 36
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.62 E-value=7.9e-15 Score=171.49 Aligned_cols=201 Identities=17% Similarity=0.196 Sum_probs=151.4
Q ss_pred cccccccccCccCCCCCccc---ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCCEEEE-EECCeEEEEECCCCcee
Q 002778 38 RSHLGGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAV-GLATQIYCFDALTLENK 112 (882)
Q Consensus 38 ~~~~~~v~~~~~~~~~~~~~---~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~rlLAV-~~d~qI~IWDa~T~e~l 112 (882)
.||.++|..-..+.. ++.+ ..++++|+||+.+|+++++|. |.+.|+.+...+.+++. +.|.+|++||+.++.++
T Consensus 246 ~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l 324 (537)
T KOG0274|consen 246 VGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACL 324 (537)
T ss_pred cCCCCCceeEEEecC-CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceE
Confidence 366666644433321 1111 258999999999999999998 88999999988877776 46899999999999999
Q ss_pred EEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhh
Q 002778 113 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 192 (882)
Q Consensus 113 ~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~ 192 (882)
+++.+|..+ +..+. +.. +.+
T Consensus 325 ~l~~~h~~~-------------V~~v~-------~~~-----------------------------~~l----------- 344 (537)
T KOG0274|consen 325 NLLRGHTGP-------------VNCVQ-------LDE-----------------------------PLL----------- 344 (537)
T ss_pred EEecccccc-------------EEEEE-------ecC-----------------------------CEE-----------
Confidence 998775442 11211 110 000
Q ss_pred hhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 002778 193 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL 272 (882)
Q Consensus 193 la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlL 272 (882)
+ +|..||+|+|||+.++++++.+++|+..|.++.|++. ..+
T Consensus 345 -----------------------------------v---sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~ 385 (537)
T KOG0274|consen 345 -----------------------------------V---SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRL 385 (537)
T ss_pred -----------------------------------E---EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceE
Confidence 0 3467899999999999999999999999999999886 899
Q ss_pred EEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 273 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 273 ATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
.+||.|+ .|++||+... ..+++.| .|++ +.+.++.+ .+++|.+++.|++|++||++.++
T Consensus 386 ~Sgs~D~-~IkvWdl~~~----------------~~c~~tl-~~h~-~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 386 LSGSLDT-TIKVWDLRTK----------------RKCIHTL-QGHT-SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred Eeeeecc-ceEeecCCch----------------hhhhhhh-cCCc-cccccccc--ccceeEeccccccEEEeecccCc
Confidence 9999975 5999999631 0244444 3443 45666554 67899999999999999999998
Q ss_pred Ccccccc
Q 002778 353 GDSGFQT 359 (882)
Q Consensus 353 g~~~l~~ 359 (882)
....+.+
T Consensus 445 ~~~~~~~ 451 (537)
T KOG0274|consen 445 CLRTLEG 451 (537)
T ss_pred eeeeecc
Confidence 8888777
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=1.4e-14 Score=157.46 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=142.3
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
-+++|+.|++.+|-++.++. |+..|+.|+.+. .++|++. +.++++|-+.+++++..++.|..|.
T Consensus 213 rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v------------ 280 (406)
T KOG0295|consen 213 RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV------------ 280 (406)
T ss_pred cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce------------
Confidence 56999999999999999998 888999999987 4667654 6789999999998877777665531
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
..+++.|. .+|++ ++-.+. ..
T Consensus 281 -Eci~wap~-~~~~~--------------------i~~at~-----------------------------------~~-- 301 (406)
T KOG0295|consen 281 -ECIAWAPE-SSYPS--------------------ISEATG-----------------------------------ST-- 301 (406)
T ss_pred -EEEEeccc-ccCcc--------------------hhhccC-----------------------------------CC--
Confidence 23343221 01111 000000 00
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccC
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 294 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~ 294 (882)
+ ++.++. .++.|++|++||+.++.++-+|.+|...|..++|+|-|++|+++..|++ +||||++.
T Consensus 302 -----~-~~~~l~----s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~----- 365 (406)
T KOG0295|consen 302 -----N-GGQVLG----SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKN----- 365 (406)
T ss_pred -----C-CccEEE----eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEecc-----
Confidence 0 011111 4688999999999999999999999999999999999999999998765 99999964
Q ss_pred CCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 295 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 295 ~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
+ +++..+. .+..-+.++.|..+.-++++|+-|.|+++|-
T Consensus 366 --~----------~cmk~~~--ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 366 --L----------QCMKTLE--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred --c----------eeeeccC--CCcceeEEEecCCCCceEEeccccceeeeee
Confidence 2 4555554 2334689999999999999999999999995
No 38
>PTZ00420 coronin; Provisional
Probab=99.61 E-value=9.8e-14 Score=163.11 Aligned_cols=103 Identities=13% Similarity=0.028 Sum_probs=79.2
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
++.||+|+|||+.+++.+..+. |...|.+++|+|+|++||+++.|+ .|+|||+.. + ..+..
T Consensus 144 gS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~-~IrIwD~Rs-------g----------~~i~t 204 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGK-HMHIIDPRK-------Q----------EIASS 204 (568)
T ss_pred EeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCC-EEEEEECCC-------C----------cEEEE
Confidence 4678999999999998777776 668899999999999999999865 599999964 2 24444
Q ss_pred EEecccCC----cEEEEEEccCCCEEEEEeCCC----eEEEEECCCCCCcc
Q 002778 313 LHRGITSA----TIQDICFSHYSQWIAIVSSKG----TCHVFVLSPFGGDS 355 (882)
Q Consensus 313 L~RG~t~a----~I~sLaFSPDg~~LAsgS~DG----TVhIWdI~~~gg~~ 355 (882)
+ .||... .++...|++|+.+|++++.++ +|+|||+...+.+.
T Consensus 205 l-~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl 254 (568)
T PTZ00420 205 F-HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL 254 (568)
T ss_pred E-ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce
Confidence 4 244332 245556889999999988764 89999998655444
No 39
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=3.4e-14 Score=164.58 Aligned_cols=265 Identities=14% Similarity=0.128 Sum_probs=176.6
Q ss_pred cccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 57 VNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 57 ~~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
+..+..+.|||..+.+.++.+- +.+.|++++|-+ +.|||+. ...+++|++.|+.+. .+.+|..-
T Consensus 299 vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~---------- 367 (775)
T KOG0319|consen 299 VTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEA---------- 367 (775)
T ss_pred EEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhh----------
Confidence 3577899999999999998885 889999999976 7888876 467999999999885 55666551
Q ss_pred cccceeeE-E-cCcEEEEeC--CCeEecc----CCCC-CCccCCC---CCCCCCcCCCCCccEEEeeccchhhhhccccc
Q 002778 132 NVGYGPMA-V-GPRWLAYAS--NTLLLSN----SGRL-SPQNLTP---SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 199 (882)
Q Consensus 132 ~~~~g~lA-l-spR~LAyss--~~v~lwd----tG~v-s~q~lt~---~~vs~s~SP~~GslVA~~A~essk~la~Glik 199 (882)
.-.++ + +..|||..+ +++++|. .+.. ..+--++ ..-.+..+-.+-+..+....|...++.. +.+
T Consensus 368 ---vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~-l~~ 443 (775)
T KOG0319|consen 368 ---VLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWD-LPK 443 (775)
T ss_pred ---eeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEec-CCC
Confidence 11222 1 225888875 4789993 1111 0000000 0000000001111122222111111100 000
Q ss_pred --------cccccccccCCC--CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC
Q 002778 200 --------TLSKYCQELLPD--GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG 269 (882)
Q Consensus 200 --------tLs~~~~~l~pd--gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdG 269 (882)
.|.-.......+ -+.+++++| -+.++ +|++|.+.+||++.....+.+|.+|+..|+++.|+|..
T Consensus 444 s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n--dkLiA----T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d 517 (775)
T KOG0319|consen 444 SKETAFPIVLTCRYTERAHDKDINCVAIAPN--DKLIA----TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKND 517 (775)
T ss_pred cccccccceehhhHHHHhhcccccceEecCC--CceEE----ecccccceeeecccCceEEEEeeCCccceEEEEecccc
Confidence 000000000111 122333333 34433 78999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 270 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 270 tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
++|||+|.|.| |+||.+.+. -++.+|. ||+. .|.-.+|-.+|+.|++++.||-++||++.
T Consensus 518 q~laT~SgD~T-vKIW~is~f-----------------SClkT~e-GH~~-aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 518 QLLATCSGDKT-VKIWSISTF-----------------SCLKTFE-GHTS-AVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred ceeEeccCCce-EEEEEeccc-----------------eeeeeec-Cccc-eeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 99999999665 999999652 3677774 7775 58889999999999999999999999999
Q ss_pred CCCCccccccccC
Q 002778 350 PFGGDSGFQTLSS 362 (882)
Q Consensus 350 ~~gg~~~l~~H~~ 362 (882)
+..+..++..|+.
T Consensus 578 t~eC~~tlD~H~D 590 (775)
T KOG0319|consen 578 TNECEMTLDAHND 590 (775)
T ss_pred chhhhhhhhhccc
Confidence 9999999999974
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.61 E-value=1.9e-14 Score=150.37 Aligned_cols=211 Identities=19% Similarity=0.253 Sum_probs=137.2
Q ss_pred CEEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC--cEEEEeCC-CeEeccCCCCCCccCC
Q 002778 91 RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN-TLLLSNSGRLSPQNLT 166 (882)
Q Consensus 91 rlLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAyss~-~v~lwdtG~vs~q~lt 166 (882)
-+||+ +.|.+|++|.+.||.|.+++.- +.. ..+.+.+.| +.||.+.+ .+++.|...-.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh-~ds------------qVNrLeiTpdk~~LAaa~~qhvRlyD~~S~n----- 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH-PDS------------QVNRLEITPDKKDLAAAGNQHVRLYDLNSNN----- 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec-Ccc------------ceeeEEEcCCcchhhhccCCeeEEEEccCCC-----
Confidence 35555 4588999999999999999963 331 135677777 88887776 46666531110
Q ss_pred CCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC
Q 002778 167 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 246 (882)
Q Consensus 167 ~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s 246 (882)
...++.|.... ++..++.|..+++... +|+.||+|+|||+.+
T Consensus 73 ------------p~Pv~t~e~h~----------------------kNVtaVgF~~dgrWMy----TgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 73 ------------PNPVATFEGHT----------------------KNVTAVGFQCDGRWMY----TGSEDGTVKIWDLRS 114 (311)
T ss_pred ------------CCceeEEeccC----------------------CceEEEEEeecCeEEE----ecCCCceEEEEeccC
Confidence 11222222110 1112223333444433 678999999999999
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCC-cccC---------------CCCCC---------cc
Q 002778 247 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS-CMRS---------------GSGNH---------KY 301 (882)
Q Consensus 247 ~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~-~~~~---------------~sG~~---------~~ 301 (882)
..+.+.| .|.+||+++..+|+-+-|.++...|+ |+|||+... +..- -.|.. -+
T Consensus 115 ~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~-irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cy 192 (311)
T KOG0315|consen 115 LSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGN-IRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCY 192 (311)
T ss_pred cccchhc-cCCCCcceEEecCCcceEEeecCCCc-EEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence 6655555 47799999999999999999999886 999998754 2110 00000 00
Q ss_pred cc-------CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC-CCcccccccc
Q 002778 302 DW-------NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF-GGDSGFQTLS 361 (882)
Q Consensus 302 d~-------sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~-gg~~~l~~H~ 361 (882)
-| .+....+.+++ . +..-|..+-||||+++||++|+|.||+||+++.+ +.+..+.+|.
T Consensus 193 vW~l~~~~~~s~l~P~~k~~-a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQ-A-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred EEEccCCCccccceEhhhee-c-ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 00 01112222332 1 2335788899999999999999999999999988 7777788885
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.60 E-value=8.6e-15 Score=158.63 Aligned_cols=182 Identities=18% Similarity=0.151 Sum_probs=142.7
Q ss_pred EEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCC
Q 002778 75 HVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN 150 (882)
Q Consensus 75 ~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~ 150 (882)
+.++ |-++|++|++.| ..++.+. |.+|+|||+.|+++..+|.+|-.. ... +|++..
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~-------------vr~-------vavS~r 204 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET-------------VRG-------VAVSKR 204 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhhe-------------eee-------eeeccc
Confidence 3444 889999999998 6788765 678999999999999998766431 122 333221
Q ss_pred CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccc
Q 002778 151 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG 230 (882)
Q Consensus 151 ~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~ 230 (882)
.+.+ +
T Consensus 205 HpYl-------------------------------------------------------------------------F-- 209 (460)
T KOG0285|consen 205 HPYL-------------------------------------------------------------------------F-- 209 (460)
T ss_pred CceE-------------------------------------------------------------------------E--
Confidence 1110 0
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 231 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 231 ~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
++..|+.|+.||++..+.+....+|-+.|.+|+..|.-..|+||+.| .+|||||+.+- ..+
T Consensus 210 -s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grD-st~RvWDiRtr-----------------~~V 270 (460)
T KOG0285|consen 210 -SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRD-STIRVWDIRTR-----------------ASV 270 (460)
T ss_pred -EecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCc-ceEEEeeeccc-----------------ceE
Confidence 23568999999999999999999999999999999999999999995 56999999752 245
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~ 372 (882)
..| .||++ .|.+|.|.|-.--+.++|.|+||++||+..+....++..|...+-+..++|-
T Consensus 271 ~~l-~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~ 330 (460)
T KOG0285|consen 271 HVL-SGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK 330 (460)
T ss_pred EEe-cCCCC-cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc
Confidence 555 47664 6999999998888999999999999999988888888888766666666653
No 42
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=1.9e-14 Score=149.36 Aligned_cols=237 Identities=16% Similarity=0.152 Sum_probs=159.0
Q ss_pred cccccCccCCCCCccc---ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEE
Q 002778 42 GGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFS 114 (882)
Q Consensus 42 ~~v~~~~~~~~~~~~~---~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~t 114 (882)
|+|+-...+. .||+. .++++||+|+...|.+++++. |...|++++.+. ++.+.|.|..|++||+.||+.++.
T Consensus 18 gaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr 96 (307)
T KOG0316|consen 18 GAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR 96 (307)
T ss_pred cceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeee
Confidence 4454444432 25554 478999999999999999998 778899988754 444456688899999999999999
Q ss_pred EecCCCcccCCCCcccccccceeeEEcC--cEEEEe--CCCeEeccCCCCC---CccCCCCCCCCCcCCCCCccEEEeec
Q 002778 115 VLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYA--SNTLLLSNSGRLS---PQNLTPSGVSPSTSPGGSSLVARYAM 187 (882)
Q Consensus 115 L~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAys--s~~v~lwdtG~vs---~q~lt~~~vs~s~SP~~GslVA~~A~ 187 (882)
+.+|... .+.+.|.- ..++.. +.++++|+.--.+ .|.+.. ++
T Consensus 97 ~rgH~aq-------------VNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde------------------a~ 145 (307)
T KOG0316|consen 97 FRGHLAQ-------------VNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE------------------AK 145 (307)
T ss_pred cccccce-------------eeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh------------------hc
Confidence 9988651 35566654 344433 3578999852111 111100 00
Q ss_pred cchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC
Q 002778 188 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP 267 (882)
Q Consensus 188 essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP 267 (882)
|.... -.+.++ ..+ .|+.||+++.||+..|+.....-+| ||++++|++
T Consensus 146 D~V~S------i~v~~h---------------------eIv---aGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~ 193 (307)
T KOG0316|consen 146 DGVSS------IDVAEH---------------------EIV---AGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK 193 (307)
T ss_pred CceeE------EEeccc---------------------EEE---eeccCCcEEEEEeecceeehhhcCC--cceeEEecC
Confidence 00000 000000 001 4678999999999999876665554 999999999
Q ss_pred CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC-cEEEEEEccCCCEEEEEeCCCeEEEE
Q 002778 268 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVF 346 (882)
Q Consensus 268 dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a-~I~sLaFSPDg~~LAsgS~DGTVhIW 346 (882)
||+.+..++-++ ++|+-|-.+ | +.|.. ..|+.+. -=.+.+|+.-...+++||.||.|.+|
T Consensus 194 d~nc~La~~l~s-tlrLlDk~t-------G----------klL~s-YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 194 DGNCSLASSLDS-TLRLLDKET-------G----------KLLKS-YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred CCCEEEEeeccc-eeeecccch-------h----------HHHHH-hcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence 999888888855 599999754 3 22222 2355443 12456788888999999999999999
Q ss_pred ECCCCCCcccccccc
Q 002778 347 VLSPFGGDSGFQTLS 361 (882)
Q Consensus 347 dI~~~gg~~~l~~H~ 361 (882)
|+........+..|.
T Consensus 255 dLvd~~~~sk~~~~~ 269 (307)
T KOG0316|consen 255 DLVDETQISKLSVVS 269 (307)
T ss_pred EeccceeeeeeccCC
Confidence 998776665555553
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.8e-14 Score=168.71 Aligned_cols=215 Identities=12% Similarity=0.168 Sum_probs=157.4
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
.++|++||-+=|.+++.+. |.++|++|.|.+ -++++|. |-.|+||+..+.+++++|.+|-.= .
T Consensus 30 sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY-------------V 96 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY-------------V 96 (1202)
T ss_pred CceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce-------------e
Confidence 3679999999999999986 999999999987 3556655 457999999999999999887540 0
Q ss_pred eeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCC
Q 002778 136 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 215 (882)
Q Consensus 136 g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s 215 (882)
|.+.|...-+
T Consensus 97 -------Rt~~FHheyP--------------------------------------------------------------- 106 (1202)
T KOG0292|consen 97 -------RTVFFHHEYP--------------------------------------------------------------- 106 (1202)
T ss_pred -------EEeeccCCCc---------------------------------------------------------------
Confidence 1222221100
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCC
Q 002778 216 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 295 (882)
Q Consensus 216 ~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~ 295 (882)
|-. +++.|.+|+||+-.++++++.+.+|...|.|.+|.|...++++||-|- +|||||+.--.-++.
T Consensus 107 -------WIl------SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ-TVRVWDisGLRkk~~ 172 (1202)
T KOG0292|consen 107 -------WIL------SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ-TVRVWDISGLRKKNK 172 (1202)
T ss_pred -------eEE------EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc-eEEEEeecchhccCC
Confidence 000 346789999999999999999999999999999999999999999965 599999852110010
Q ss_pred C-C--------C-CccccCC-cccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC--CccccccccC
Q 002778 296 S-G--------N-HKYDWNS-SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG--GDSGFQTLSS 362 (882)
Q Consensus 296 s-G--------~-~~~d~ss-s~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g--g~~~l~~H~~ 362 (882)
. | . ...|.-+ ....+.-...||++. |.-+||.|.=-.|++|++|.-|++|.++..+ +.-+.++|..
T Consensus 173 ~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG-VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 173 APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG-VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN 251 (1202)
T ss_pred CCCCchhhhhccccchhhcCCcCeeeeeeecccccc-cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC
Confidence 0 0 0 0011111 111222233587764 8889999999999999999999999997654 3346799998
Q ss_pred CCCCCcccCC
Q 002778 363 QGGDPYLFPV 372 (882)
Q Consensus 363 ~~~~~~~sp~ 372 (882)
.|.+..++|.
T Consensus 252 nVssvlfhp~ 261 (1202)
T KOG0292|consen 252 NVSSVLFHPH 261 (1202)
T ss_pred CcceEEecCc
Confidence 8888777773
No 44
>PTZ00421 coronin; Provisional
Probab=99.59 E-value=2.4e-13 Score=158.06 Aligned_cols=102 Identities=19% Similarity=0.220 Sum_probs=83.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.||+|+|||+.+++.+..+.+|...|.+|+|+|+|.+|||++.||+ |+|||+.. + ..+.
T Consensus 143 Sgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rs-------g----------~~v~ 204 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRD-------G----------TIVS 204 (493)
T ss_pred EEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCC-------C----------cEEE
Confidence 3467999999999999999999999999999999999999999999765 99999964 2 3455
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEe----CCCeEEEEECCCCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSPFG 352 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS----~DGTVhIWdI~~~g 352 (882)
.+. ++....+..+.|.+++..|++++ .|++|+|||+....
T Consensus 205 tl~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 205 SVE-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EEe-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 553 55444566788999988887654 47999999997654
No 45
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=7.7e-14 Score=161.80 Aligned_cols=236 Identities=16% Similarity=0.158 Sum_probs=164.5
Q ss_pred ccCCeEEEEECCCCeEEEEEEc-CCcEEEEEEc--CCEEEEEECC--eEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCS--PRIVAVGLAT--QIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLkf-~s~V~sV~~S--~rlLAV~~d~--qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
++.+...+|.+..-.+||.|.- ...|..+.+| ++.||++..+ |+-||+..+-.-+....+|-.
T Consensus 284 FssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~------------ 351 (893)
T KOG0291|consen 284 FSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD------------ 351 (893)
T ss_pred ecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc------------
Confidence 3567788999999999999984 4789999998 7999998765 899999876443333333332
Q ss_pred ccceeeEEcC--cEEEEeC--CCeEeccCCC-CCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccc
Q 002778 133 VGYGPMAVGP--RWLAYAS--NTLLLSNSGR-LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 207 (882)
Q Consensus 133 ~~~g~lAlsp--R~LAyss--~~v~lwdtG~-vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~ 207 (882)
....++.+| .++|... .++++||+.. -+..+++. +.+|..
T Consensus 352 -~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte--------Hts~Vt-------------------------- 396 (893)
T KOG0291|consen 352 -RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE--------HTSGVT-------------------------- 396 (893)
T ss_pred -ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc--------CCCceE--------------------------
Confidence 246788888 5888764 4799998521 11111111 011111
Q ss_pred cCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 002778 208 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFR 286 (882)
Q Consensus 208 l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~-spIsaLaFSPdGtlLATAS~dGt~IrVWd 286 (882)
.+++...++++. +.+-||+|+.||+...+..++|.... -..++|+.+|+|.++..|+.|--.|.||+
T Consensus 397 --------~v~f~~~g~~ll----ssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 397 --------AVQFTARGNVLL----SSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred --------EEEEEecCCEEE----EeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence 111111122211 45789999999999999999988643 34678999999999998888777799999
Q ss_pred cCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCC
Q 002778 287 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 366 (882)
Q Consensus 287 i~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~ 366 (882)
+++ | ++.....||. ++|.+|+|+|++..||++|-|.||+||++=...+.+.--.+.+.+.+
T Consensus 465 ~qT-------G-----------qllDiLsGHE-gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~ 525 (893)
T KOG0291|consen 465 VQT-------G-----------QLLDILSGHE-GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLA 525 (893)
T ss_pred eec-------C-----------eeeehhcCCC-CcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeE
Confidence 976 5 4555556875 58999999999999999999999999999665444433334444444
Q ss_pred CcccC
Q 002778 367 PYLFP 371 (882)
Q Consensus 367 ~~~sp 371 (882)
..+.|
T Consensus 526 vsfrP 530 (893)
T KOG0291|consen 526 VSFRP 530 (893)
T ss_pred EEEcC
Confidence 44444
No 46
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.58 E-value=9.8e-15 Score=158.50 Aligned_cols=253 Identities=16% Similarity=0.159 Sum_probs=167.2
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC-CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP-RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~-rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
.++.|+|||+.+.+++.+++ |.+.|++|+++. ..+.+|.|.+|+.|-+.. ..++++.+... +-|+ .
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~-------~~gI----d 154 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSV-------YLGI----D 154 (433)
T ss_pred cCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeecccc-------cccc----c
Confidence 47999999999999999999 778999999987 677788899999998764 46677764222 0000 0
Q ss_pred eeEEcCcEEEEeCCCeEeccCCCCCC-ccCCC--C-CCCCCcCCCCCccEEEeeccchhhhhcc-ccccccccccccCCC
Q 002778 137 PMAVGPRWLAYASNTLLLSNSGRLSP-QNLTP--S-GVSPSTSPGGSSLVARYAMEHSKQFAAG-LSKTLSKYCQELLPD 211 (882)
Q Consensus 137 ~lAlspR~LAyss~~v~lwdtG~vs~-q~lt~--~-~vs~s~SP~~GslVA~~A~essk~la~G-liktLs~~~~~l~pd 211 (882)
-+- .....|..+..+.||+-.+..| +.++- + ..+..+.|...+++|..+.|++.-|-.. .-+-+.+....
T Consensus 155 h~~-~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~---- 229 (433)
T KOG0268|consen 155 HHR-KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT---- 229 (433)
T ss_pred ccc-ccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee----
Confidence 000 0123456677889998644433 22211 1 2234455666677777666654322110 00011111111
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCC
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 290 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~ 290 (882)
.-...++.|| .. +....|+.|..+..+|+... +.+...+.|.++|..+.|||.|+-+||||.|. .||||.+..
T Consensus 230 mRTN~IswnP-ea---fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-sIRIf~~~~- 303 (433)
T KOG0268|consen 230 MRTNTICWNP-EA---FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-SIRIFPVNH- 303 (433)
T ss_pred ccccceecCc-cc---cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc-eEEEeecCC-
Confidence 1112334444 11 22225789999999999876 46778899999999999999999999999954 599999964
Q ss_pred cccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 291 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 291 ~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
| ..+-+|-.+|- ..|.+|.||.|++||.+||+|+.|+||.-...
T Consensus 304 ------~--------~SRdiYhtkRM---q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 304 ------G--------HSRDIYHTKRM---QHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred ------C--------cchhhhhHhhh---heeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 1 11234433332 35999999999999999999999999987653
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.58 E-value=5.2e-15 Score=159.69 Aligned_cols=217 Identities=15% Similarity=0.131 Sum_probs=150.9
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCCEEEEEE-CCeEEEEECCCCc---eeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~rlLAV~~-d~qI~IWDa~T~e---~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
++.||++||..||+++.++- |-.+|..++|+..+++.+. |..|.+||+.... +.+.|.+|..
T Consensus 255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA------------- 321 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA------------- 321 (499)
T ss_pred CCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh-------------
Confidence 68999999999999999986 6689999999998888776 6789999987644 2233444443
Q ss_pred cceeeEEcCcEEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 134 GYGPMAVGPRWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 134 ~~g~lAlspR~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
..+.+.++.+++..++ .++++|++... ..| .++.++...+...
T Consensus 322 aVNvVdfd~kyIVsASgDRTikvW~~st~-------------------efv----------------Rtl~gHkRGIACl 366 (499)
T KOG0281|consen 322 AVNVVDFDDKYIVSASGDRTIKVWSTSTC-------------------EFV----------------RTLNGHKRGIACL 366 (499)
T ss_pred heeeeccccceEEEecCCceEEEEeccce-------------------eee----------------hhhhcccccceeh
Confidence 2467788888887765 47899985211 111 1111111111000
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
.. -++... +|+.|.+|++||+..|+++..+.+|..-|.++.|+. +.+++|..||+ |+|||+....
T Consensus 367 ------QY--r~rlvV----SGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDGk-ikvWdl~aal 431 (499)
T KOG0281|consen 367 ------QY--RDRLVV----SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGK-IKVWDLQAAL 431 (499)
T ss_pred ------hc--cCeEEE----ecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeeccccce-EEEEeccccc
Confidence 00 011111 567899999999999999999999999999999964 68999999886 9999996421
Q ss_pred -ccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 292 -MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 292 -~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.+.. ++--++..+-+ +...|..+.| |...|+++|.|.||-|||+..+
T Consensus 432 dpra~---------~~~~Cl~~lv~--hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 432 DPRAP---------ASTLCLRTLVE--HSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred CCccc---------ccchHHHhhhh--ccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 0000 01123334433 2347888998 6688999999999999998653
No 48
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.57 E-value=1.8e-14 Score=158.53 Aligned_cols=222 Identities=15% Similarity=0.170 Sum_probs=149.3
Q ss_pred ccccccccCccCCCCCccc--ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCCE--EEEE-ECCeEEEEECCCCcee
Q 002778 39 SHLGGVRDGMMDSQSGNCV--NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRI--VAVG-LATQIYCFDALTLENK 112 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~--~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~rl--LAV~-~d~qI~IWDa~T~e~l 112 (882)
|.+|++..--.++.+..++ ..++.+++|++..++..++|. |.+.|.++.|.... ++.+ .|.+|++||+....|.
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhee
Confidence 3344443333333333333 356889999999999999998 88999999986522 3333 3667999999887776
Q ss_pred EEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhh
Q 002778 113 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 192 (882)
Q Consensus 113 ~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~ 192 (882)
+++.--.. -+.+.+ .. ..
T Consensus 297 kt~l~~S~--------------cnDI~~-------~~------------------------------~~----------- 314 (459)
T KOG0288|consen 297 KTVLPGSQ--------------CNDIVC-------SI------------------------------SD----------- 314 (459)
T ss_pred cccccccc--------------ccceEe-------cc------------------------------ee-----------
Confidence 65431000 001110 00 00
Q ss_pred hhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 002778 193 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL 272 (882)
Q Consensus 193 la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlL 272 (882)
+ .+++.|++|+.||+.+..++.....|. .|++|..+++|..|
T Consensus 315 -----------------------------------~--~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~l 356 (459)
T KOG0288|consen 315 -----------------------------------V--ISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLEL 356 (459)
T ss_pred -----------------------------------e--eecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEE
Confidence 0 045789999999999999999998885 99999999999999
Q ss_pred EEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecc-cCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 273 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 273 ATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~-t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.+.+.|++ ++++|+... ...+.+... |. +...++-+.||||+.|+|+||.||.|+||++.+.
T Consensus 357 LsssRDdt-l~viDlRt~---------------eI~~~~sA~-g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 357 LSSSRDDT-LKVIDLRTK---------------EIRQTFSAE-GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred eeecCCCc-eeeeecccc---------------cEEEEeecc-ccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 99988765 899999642 113333322 22 2235788999999999999999999999999987
Q ss_pred CCccccccccCCCCCCcccCCCCCCcccCCCC
Q 002778 352 GGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSG 383 (882)
Q Consensus 352 gg~~~l~~H~~~~~~~~~sp~~~lpw~~~s~~ 383 (882)
+.+..+....+. ..+.++.|.+....
T Consensus 420 KlE~~l~~s~s~------~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 420 KLEKVLSLSTSN------AAITSLSWNPSGSG 445 (459)
T ss_pred eEEEEeccCCCC------cceEEEEEcCCCch
Confidence 766655433211 03445566554443
No 49
>PTZ00420 coronin; Provisional
Probab=99.56 E-value=6.8e-13 Score=156.11 Aligned_cols=199 Identities=12% Similarity=0.197 Sum_probs=132.7
Q ss_pred ccccccccCccCCCCCccc---ccCCeEEEEECCCCe--------EEEEEE-cCCcEEEEEEcC---CEEEE-EECCeEE
Q 002778 39 SHLGGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHC--------YEHVLR-FRSSVCMVRCSP---RIVAV-GLATQIY 102 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~---~sp~tVrlWDlkTG~--------~V~tLk-f~s~V~sV~~S~---rlLAV-~~d~qI~ 102 (882)
+|.++|.+-...+.+++.+ ..+++|+|||+.++. .+..+. |...|.+|+|++ .+|++ +.|+.|+
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 4556665555554445544 357999999998753 234555 778899999997 24555 4578999
Q ss_pred EEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccE
Q 002778 103 CFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLV 182 (882)
Q Consensus 103 IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslV 182 (882)
|||+.+++.+.++. ++.. ... ++|..+ |.++
T Consensus 152 IWDl~tg~~~~~i~-~~~~-------------V~S-------lswspd----------------------------G~lL 182 (568)
T PTZ00420 152 IWDIENEKRAFQIN-MPKK-------------LSS-------LKWNIK----------------------------GNLL 182 (568)
T ss_pred EEECCCCcEEEEEe-cCCc-------------EEE-------EEECCC----------------------------CCEE
Confidence 99999988776663 2220 112 222211 1111
Q ss_pred EEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEE
Q 002778 183 ARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISA 262 (882)
Q Consensus 183 A~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsa 262 (882)
+ +++.|+.|+|||+.+++.+.++.+|.+.+.+
T Consensus 183 --------------------------------------------a----t~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s 214 (568)
T PTZ00420 183 --------------------------------------------S----GTCVGKHMHIIDPRKQEIASSFHIHDGGKNT 214 (568)
T ss_pred --------------------------------------------E----EEecCCEEEEEECCCCcEEEEEecccCCcee
Confidence 0 2346899999999999999999999886543
Q ss_pred -----EEECCCCCEEEEEEcCC---CEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEE
Q 002778 263 -----LCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 334 (882)
Q Consensus 263 -----LaFSPdGtlLATAS~dG---t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~L 334 (882)
..|++++.+|+|++.++ +.|+|||+... + ..+..+.-......+...-++++|.++
T Consensus 215 ~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~------~----------~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 215 KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT------T----------SALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC------C----------CceEEEEecCCccceEEeeeCCCCCEE
Confidence 34678999999988765 36999999631 1 123332211222344555557779999
Q ss_pred EEEeCCCeEEEEECCC
Q 002778 335 AIVSSKGTCHVFVLSP 350 (882)
Q Consensus 335 AsgS~DGTVhIWdI~~ 350 (882)
++|+.|++|++|++..
T Consensus 279 lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEECCCeEEEEEccC
Confidence 9999999999999975
No 50
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.55 E-value=2.1e-12 Score=134.77 Aligned_cols=259 Identities=14% Similarity=0.085 Sum_probs=149.8
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEE-EEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlL-AV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+++|++||+.+++.+.++.....+..+++++ +.| +++ .++.|++||+.+++.+..+..+..+
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~------------- 75 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP------------- 75 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc-------------
Confidence 36789999999999999998666678888876 455 343 3578999999999877766433221
Q ss_pred ceeeEEcC--cEEEEe---CCCeEeccCCCCC-CccCCC--CCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 135 YGPMAVGP--RWLAYA---SNTLLLSNSGRLS-PQNLTP--SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 135 ~g~lAlsp--R~LAys---s~~v~lwdtG~vs-~q~lt~--~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
..++++| +.|+.. +..+.+|+..... ...+.. .......+|++..++ ....+..... .+..-++...
T Consensus 76 -~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~-~~~~~~~~~~---~~d~~~~~~~ 150 (300)
T TIGR03866 76 -ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVV-NTSETTNMAH---FIDTKTYEIV 150 (300)
T ss_pred -cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEE-EEecCCCeEE---EEeCCCCeEE
Confidence 2456666 445433 2468888853211 111111 011223345443332 2221110000 0000000000
Q ss_pred -ccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCC-----C--CeEEEEECCCCCEEEEEEcC
Q 002778 207 -ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-----S--PISALCFDPSGTLLVTASVY 278 (882)
Q Consensus 207 -~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~-----s--pIsaLaFSPdGtlLATAS~d 278 (882)
.+........+.++++++.+.+ ++..+|.|.+||+.+++.+..+..+. . ....++|+|+|++++.+...
T Consensus 151 ~~~~~~~~~~~~~~s~dg~~l~~---~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 151 DNVLVDQRPRFAEFTADGKELWV---SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred EEEEcCCCccEEEECCCCCEEEE---EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence 0001111112334445554432 23568999999999998877665332 1 12468999999986655433
Q ss_pred CCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEE-eCCCeEEEEECCCCCCcccc
Q 002778 279 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 279 Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsg-S~DGTVhIWdI~~~gg~~~l 357 (882)
...|.|||+.. + ..+..+..+ ..+.+++|+|||++|+++ ..+|+|+|||+........+
T Consensus 228 ~~~i~v~d~~~-------~----------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 228 ANRVAVVDAKT-------Y----------EVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CCeEEEEECCC-------C----------cEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 34599999853 2 233333222 258899999999999886 46899999999876544444
Q ss_pred c
Q 002778 358 Q 358 (882)
Q Consensus 358 ~ 358 (882)
+
T Consensus 288 ~ 288 (300)
T TIGR03866 288 K 288 (300)
T ss_pred E
Confidence 3
No 51
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.55 E-value=5.5e-13 Score=140.69 Aligned_cols=247 Identities=17% Similarity=0.160 Sum_probs=150.2
Q ss_pred CCCCccccc------ccccCceEEEEecCCCCCCC-------CCccccccccc--ccCccCCCCCcccccCCeEEEEECC
Q 002778 5 PVKDDGCEG------FRKLHPFLLVVAGEDTNTLA-------PGQNRSHLGGV--RDGMMDSQSGNCVNSPTAVRFYSFQ 69 (882)
Q Consensus 5 p~~~~~~d~------f~~~~pll~vv~~d~~~~~~-------~~~~~~~~~~v--~~~~~~~~~~~~~~sp~tVrlWDlk 69 (882)
||.-.|+|+ |-..--||.-++-|.+...- .+--.||.|+| ++....+..=-.-..+.+++|||++
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 455555543 44444555555555543211 01114677777 4444433321011368999999999
Q ss_pred CCeEEEEEEcCCcEEEEEEcC--CEEEEEECCe------EEEEECCCCc-------eeEEEecCCCcccCCCCccccccc
Q 002778 70 SHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQ------IYCFDALTLE-------NKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 70 TG~~V~tLkf~s~V~sV~~S~--rlLAV~~d~q------I~IWDa~T~e-------~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
+|+++.+++++.+|+.+.|+. .+++++.+++ |.+||++... ..+.+.++..
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s-------------- 148 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS-------------- 148 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc--------------
Confidence 999999999999999999986 5666666543 8888887432 1122211100
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
.-+..+|.. .
T Consensus 149 --------------kit~a~Wg~-------------------l------------------------------------- 158 (327)
T KOG0643|consen 149 --------------KITSALWGP-------------------L------------------------------------- 158 (327)
T ss_pred --------------ceeeeeecc-------------------c-------------------------------------
Confidence 001122321 0
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc--
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC-- 291 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~-~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~-- 291 (882)
++.+. +++.+|.|.+||+.++. .+..-+-|...|+.|+|+||.++++|+|.| ++.++||+.+-.
T Consensus 159 --------~~~ii----~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D-ttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 159 --------GETII----AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKD-TTAKLVDVRTLEVL 225 (327)
T ss_pred --------CCEEE----EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccC-ccceeeeccceeeE
Confidence 01111 46789999999999985 456668899999999999999999999985 568999976421
Q ss_pred -------ccC-------------CCCCCccccCCcccEEEE-------------EE--ecccCCcEEEEEEccCCCEEEE
Q 002778 292 -------MRS-------------GSGNHKYDWNSSHVHLYK-------------LH--RGITSATIQDICFSHYSQWIAI 336 (882)
Q Consensus 292 -------~~~-------------~sG~~~~d~sss~~~l~~-------------L~--RG~t~a~I~sLaFSPDg~~LAs 336 (882)
..| +-|....|.+....+.-+ +. .||- .+|.+|||+|||+-.++
T Consensus 226 Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF-GPINsvAfhPdGksYsS 304 (327)
T KOG0643|consen 226 KTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF-GPINSVAFHPDGKSYSS 304 (327)
T ss_pred EEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc-cCcceeEECCCCccccc
Confidence 011 112111111111100000 11 1332 47999999999999999
Q ss_pred EeCCCeEEEEECC
Q 002778 337 VSSKGTCHVFVLS 349 (882)
Q Consensus 337 gS~DGTVhIWdI~ 349 (882)
|+.||.|+|.-.+
T Consensus 305 GGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 305 GGEDGYVRLHHFD 317 (327)
T ss_pred CCCCceEEEEEec
Confidence 9999999987554
No 52
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.54 E-value=8.1e-14 Score=145.71 Aligned_cols=152 Identities=24% Similarity=0.355 Sum_probs=118.0
Q ss_pred ccccccccCccCCCCCcccc---cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEECCeEEEEECCCCceeE
Q 002778 39 SHLGGVRDGMMDSQSGNCVN---SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKF 113 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~~---sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~d~qI~IWDa~T~e~l~ 113 (882)
+|.|++|....+.. .+|+. .+++||+||.+||+.+++|.|++.|.++.++. ++|.++....|++||+.+++.++
T Consensus 141 ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK 219 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK 219 (334)
T ss_pred CCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccccee
Confidence 56677777666543 44553 46999999999999999999999999988875 89999998999999999999877
Q ss_pred EEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhh
Q 002778 114 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 193 (882)
Q Consensus 114 tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~l 193 (882)
...-.-+ +..+ +..|..+.+|
T Consensus 220 s~k~P~n------------------------V~SA------------------------SL~P~k~~fV----------- 240 (334)
T KOG0278|consen 220 SYKMPCN------------------------VESA------------------------SLHPKKEFFV----------- 240 (334)
T ss_pred eccCccc------------------------cccc------------------------cccCCCceEE-----------
Confidence 6542111 1100 0112221111
Q ss_pred hccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCCCCEE
Q 002778 194 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSGTLL 272 (882)
Q Consensus 194 a~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f-~aH~spIsaLaFSPdGtlL 272 (882)
.|+.|+.+..||..++..+..+ ++|-+||.|+.|+|||.+-
T Consensus 241 --------------------------------------aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 241 --------------------------------------AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred --------------------------------------ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCcee
Confidence 2467899999999999988776 8999999999999999999
Q ss_pred EEEEcCCCEEEEEecCC
Q 002778 273 VTASVYGNNINIFRIMP 289 (882)
Q Consensus 273 ATAS~dGt~IrVWdi~p 289 (882)
|++|.||+ ||||.+.+
T Consensus 283 AsGSEDGT-irlWQt~~ 298 (334)
T KOG0278|consen 283 ASGSEDGT-IRLWQTTP 298 (334)
T ss_pred eccCCCce-EEEEEecC
Confidence 99999987 99999976
No 53
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.54 E-value=3.3e-14 Score=156.20 Aligned_cols=206 Identities=17% Similarity=0.219 Sum_probs=146.7
Q ss_pred ccCCCceEEEEECCCC---------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccc
Q 002778 232 DMDNAGIVVVKDFVTR---------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 302 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~---------~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d 302 (882)
+|+.|..|+||-+... ..+..|..|+..|+++.|+|+|.+||||+.+| .|.+|.......... -+ ..+
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g-~v~lWk~~~~~~~~~-d~-e~~ 107 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG-EVFLWKQGDVRIFDA-DT-EAD 107 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc-eEEEEEecCcCCccc-cc-hhh
Confidence 5677889999998642 23567788999999999999999999999866 588998752100000 00 111
Q ss_pred cCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCCCCCCcccCCC
Q 002778 303 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSS 382 (882)
Q Consensus 303 ~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~~~lpw~~~s~ 382 (882)
.....+.+.+..||+ ...|++++|+||++++++++.|.++++||+..+.-...+..|. +|++.+ +|++.+.
T Consensus 108 ~~ke~w~v~k~lr~h-~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~-----~yvqgv---awDpl~q 178 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGH-RDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE-----HYVQGV---AWDPLNQ 178 (434)
T ss_pred hCccceEEEEEeccc-ccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc-----ccccee---ecchhhh
Confidence 222346777777885 4689999999999999999999999999999877777777885 577776 8999999
Q ss_pred CcccccccCCCCCccccceeeeeccCccccccccccccccCCccccccceEEeeeccCccccccccccccCCcccEEEEc
Q 002778 383 GISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYT 462 (882)
Q Consensus 383 ~~~~Q~~~~~~~~~~ls~vsrIk~~~~gw~~~vs~~~s~at~~~~~ps~~va~~Fh~~~~~~~~~~~~~~~~~~~LlV~S 462 (882)
+...+..++.+--+.++...+|+.=.. .++-+-+- .--.+.+.-+||++ +++.|+|+|-++
T Consensus 179 yv~s~s~dr~~~~~~~~~~~~~~~~~~------~~m~~~~~---~~~e~~s~rLfhDe----------TlksFFrRlsfT 239 (434)
T KOG1009|consen 179 YVASKSSDRHPEGFSAKLKQVIKRHGL------DIMPAKAF---NEREGKSTRLFHDE----------TLKSFFRRLSFT 239 (434)
T ss_pred hhhhhccCcccceeeeeeeeeeeeeee------eEeeeccc---CCCCcceeeeeecC----------chhhhhhhcccC
Confidence 988887777554444444444443110 01100000 01113456699999 889999999999
Q ss_pred CCccEE
Q 002778 463 PSGYVV 468 (882)
Q Consensus 463 p~G~Li 468 (882)
|||.|+
T Consensus 240 PdG~ll 245 (434)
T KOG1009|consen 240 PDGSLL 245 (434)
T ss_pred CCCcEE
Confidence 999996
No 54
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9.2e-13 Score=151.04 Aligned_cols=237 Identities=19% Similarity=0.206 Sum_probs=153.7
Q ss_pred cccCCeEEEEECCCCeEEEEEEc-CCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEec-CCCcccCCCCcccc
Q 002778 57 VNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGI 131 (882)
Q Consensus 57 ~~sp~tVrlWDlkTG~~V~tLkf-~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t-~p~p~~~~~~~~g~ 131 (882)
+.....|.+|+..+|+......+ ...|++|.+++ +.||||. ++.|+|||+.+.+.+.++.. |..
T Consensus 193 Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~----------- 261 (484)
T KOG0305|consen 193 VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS----------- 261 (484)
T ss_pred EEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc-----------
Confidence 35667999999999997766666 78899999985 7999986 57899999999888888876 432
Q ss_pred cccceeeEEcCcEEEEeCC--CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccC
Q 002778 132 NVGYGPMAVGPRWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 132 ~~~~g~lAlspR~LAyss~--~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~ 209 (882)
..+.+++....|...+. .+..++ .....++. .++.+|.++.
T Consensus 262 --rvg~laW~~~~lssGsr~~~I~~~d------------------------------vR~~~~~~----~~~~~H~qeV- 304 (484)
T KOG0305|consen 262 --RVGSLAWNSSVLSSGSRDGKILNHD------------------------------VRISQHVV----STLQGHRQEV- 304 (484)
T ss_pred --eeEEEeccCceEEEecCCCcEEEEE------------------------------Eecchhhh----hhhhccccee-
Confidence 13555554333322211 111111 11111111 1122233221
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEE-cCCCEEEEEec
Q 002778 210 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTAS-VYGNNINIFRI 287 (882)
Q Consensus 210 pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS-~dGt~IrVWdi 287 (882)
.-+.-+++...++ +|+.|+.|.|||......+.++..|+..|-||+|+| ...+||||+ ..+..|++|++
T Consensus 305 -----CgLkws~d~~~lA----SGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 305 -----CGLKWSPDGNQLA----SGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred -----eeeEECCCCCeec----cCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 0112233344433 678999999999988888999999999999999999 567999974 34567999998
Q ss_pred CCCcccC--CCCC--CccccCCc-------------ccEEEEE--------EecccCCcEEEEEEccCCCEEEEEeCCCe
Q 002778 288 MPSCMRS--GSGN--HKYDWNSS-------------HVHLYKL--------HRGITSATIQDICFSHYSQWIAIVSSKGT 342 (882)
Q Consensus 288 ~p~~~~~--~sG~--~~~d~sss-------------~~~l~~L--------~RG~t~a~I~sLaFSPDg~~LAsgS~DGT 342 (882)
....... -+|. -+.-|... ...+|+. .-||+ .+|..+++||||..|++++.|+|
T Consensus 376 ~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~-~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 376 NTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT-SRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred CCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc-ceeEEEEECCCCCEEEEecccCc
Confidence 7532100 0010 01112111 1122222 23544 57999999999999999999999
Q ss_pred EEEEECCCC
Q 002778 343 CHVFVLSPF 351 (882)
Q Consensus 343 VhIWdI~~~ 351 (882)
+++|++-+.
T Consensus 455 lrfw~~f~~ 463 (484)
T KOG0305|consen 455 LRFWNLFDE 463 (484)
T ss_pred EEeccccCC
Confidence 999999664
No 55
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.50 E-value=5.9e-13 Score=140.10 Aligned_cols=215 Identities=15% Similarity=0.145 Sum_probs=143.1
Q ss_pred cCCeEEEEECCCCeEEEEEE---cCCcEEEEEEcC---CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSP---RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk---f~s~V~sV~~S~---rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
.++++++|++..++....+. |.+.|-.+++.+ ++++++ .++.|++||++.+++...+.+.-.
T Consensus 40 ~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e----------- 108 (313)
T KOG1407|consen 40 FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE----------- 108 (313)
T ss_pred cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-----------
Confidence 67999999999887776664 667788889875 566665 577899999999999888764211
Q ss_pred cccceeeEEcC--cEEEEeCCCeEe--ccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccc
Q 002778 132 NVGYGPMAVGP--RWLAYASNTLLL--SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 207 (882)
Q Consensus 132 ~~~~g~lAlsp--R~LAyss~~v~l--wdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~ 207 (882)
| .-++++| .++|+.++.-.| -+. +. .+.+... .+.....+
T Consensus 109 n---i~i~wsp~g~~~~~~~kdD~it~id~-----------------------------r~-~~~~~~~---~~~~e~ne 152 (313)
T KOG1407|consen 109 N---INITWSPDGEYIAVGNKDDRITFIDA-----------------------------RT-YKIVNEE---QFKFEVNE 152 (313)
T ss_pred c---eEEEEcCCCCEEEEecCcccEEEEEe-----------------------------cc-cceeehh---cccceeee
Confidence 1 2345555 666665532111 110 00 0000000 00000000
Q ss_pred cCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEec
Q 002778 208 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 287 (882)
Q Consensus 208 l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi 287 (882)
..+. + +....-+ ....|.|.|-...+.+.+..++||.....||.|+|+|++||+||.| -.+-+||+
T Consensus 153 -------~~w~-~-~nd~Ffl----t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD-AlvSLWD~ 218 (313)
T KOG1407|consen 153 -------ISWN-N-SNDLFFL----TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD-ALVSLWDV 218 (313)
T ss_pred -------eeec-C-CCCEEEE----ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecccc-ceeeccCh
Confidence 0011 0 0111001 1335899999999999999999999999999999999999999995 46899999
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
..- .++..+.|- ..+|..|+||.||++||++|.|.-|-|=.++++..
T Consensus 219 ~EL-----------------iC~R~isRl--dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 219 DEL-----------------ICERCISRL--DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred hHh-----------------hhheeeccc--cCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 531 244444442 35799999999999999999999888877776543
No 56
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.50 E-value=8.9e-14 Score=159.40 Aligned_cols=200 Identities=17% Similarity=0.210 Sum_probs=147.7
Q ss_pred ccCCCCCcccc---cCCeEEEEECCCCe------EEEEEE-cCCcEEEEEE--cCCEEE-EEECCeEEEEECCCC--cee
Q 002778 48 MMDSQSGNCVN---SPTAVRFYSFQSHC------YEHVLR-FRSSVCMVRC--SPRIVA-VGLATQIYCFDALTL--ENK 112 (882)
Q Consensus 48 ~~~~~~~~~~~---sp~tVrlWDlkTG~------~V~tLk-f~s~V~sV~~--S~rlLA-V~~d~qI~IWDa~T~--e~l 112 (882)
+.+..++++++ -++.|++|+..... ++.+++ |..+|.++.+ +++.|+ ++.|.+|++|++..+ -++
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~ 110 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM 110 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH
Confidence 33445566554 46899999986433 456666 6778988765 444555 456889999998766 577
Q ss_pred EEEecCCCcccCCCCcccccccceeeEEcCcEEEEe-CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchh
Q 002778 113 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYA-SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 191 (882)
Q Consensus 113 ~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAys-s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk 191 (882)
.+|.+|.. |. +.|||+ .+.. +|
T Consensus 111 stir~H~D--------------YV------kcla~~ak~~~----------------------------lv--------- 133 (735)
T KOG0308|consen 111 STIRTHKD--------------YV------KCLAYIAKNNE----------------------------LV--------- 133 (735)
T ss_pred hhhhcccc--------------hh------eeeeecccCce----------------------------eE---------
Confidence 77777765 11 225653 2111 01
Q ss_pred hhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc--EE--------EEec-cCCCCe
Q 002778 192 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--II--------SQFK-AHTSPI 260 (882)
Q Consensus 192 ~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~--~v--------~~f~-aH~spI 260 (882)
++|+-|+.|.|||+.++. .+ ..+. +|..+|
T Consensus 134 ---------------------------------------aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 134 ---------------------------------------ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred ---------------------------------------EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 045678999999999772 22 2333 789999
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC
Q 002778 261 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 340 (882)
Q Consensus 261 saLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D 340 (882)
.+||-++.|+.+|+|+..+ .||+||-.+ + .++.+|+ ||+. .|..|-.++||+.+.++|+|
T Consensus 175 YSLA~N~t~t~ivsGgtek-~lr~wDprt-------~----------~kimkLr-GHTd-NVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTEK-DLRLWDPRT-------C----------KKIMKLR-GHTD-NVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred eeeecCCcceEEEecCccc-ceEEecccc-------c----------cceeeee-cccc-ceEEEEEcCCCCeEeecCCC
Confidence 9999999999999999865 599999764 2 4677774 8875 59999999999999999999
Q ss_pred CeEEEEECCCCCCccccccccCC
Q 002778 341 GTCHVFVLSPFGGDSGFQTLSSQ 363 (882)
Q Consensus 341 GTVhIWdI~~~gg~~~l~~H~~~ 363 (882)
|||+||||....+..++..|...
T Consensus 235 gtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 235 GTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred ceEEeeeccccceeeeEEeccCc
Confidence 99999999999999998888643
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.6e-12 Score=136.20 Aligned_cols=227 Identities=14% Similarity=0.111 Sum_probs=149.1
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEE--CCeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~--d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
.+.+|+|||..+|+.++++. +.-.|--++|.. .++..+. ++.|+.-++.+.+.++.+.+|...
T Consensus 34 ~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~----------- 102 (311)
T KOG1446|consen 34 EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKR----------- 102 (311)
T ss_pred CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCce-----------
Confidence 35689999999999999997 445677777753 3344443 568999999999999999998773
Q ss_pred ccceeeEEcC---cEEEEe-CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 133 VGYGPMAVGP---RWLAYA-SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 133 ~~~g~lAlsp---R~LAys-s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
++.++++| .+|..+ ++++++||.-.-..|.+
T Consensus 103 --V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~------------------------------------------- 137 (311)
T KOG1446|consen 103 --VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL------------------------------------------- 137 (311)
T ss_pred --EEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-------------------------------------------
Confidence 35677777 555544 34899998521111111
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECCCC--cEEEEec---cCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 002778 209 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFK---AHTSPISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 209 ~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~--~~v~~f~---aH~spIsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
+.-......++++.+-+.++ +.....|+|||+++- .+-.+|. +-....+.|.|||||+.|.-....+ .|.
T Consensus 138 l~~~~~pi~AfDp~GLifA~----~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~~ 212 (311)
T KOG1446|consen 138 LNLSGRPIAAFDPEGLIFAL----ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-FIY 212 (311)
T ss_pred EecCCCcceeECCCCcEEEE----ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-cEE
Confidence 11111112233444444332 233349999999864 2344443 3356789999999999888777644 588
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCC--cEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccc-c
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT-L 360 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a--~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~-H 360 (882)
|.|.-. | ..+..+. +..++ .--+-+|+|||++|.+|+.||+||||+++++.....+++ |
T Consensus 213 ~lDAf~-------G----------~~~~tfs-~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~ 274 (311)
T KOG1446|consen 213 LLDAFD-------G----------TVKSTFS-GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN 274 (311)
T ss_pred EEEccC-------C----------cEeeeEe-eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC
Confidence 999743 4 1333332 22222 124678999999999999999999999988766666665 4
Q ss_pred cCCC
Q 002778 361 SSQG 364 (882)
Q Consensus 361 ~~~~ 364 (882)
...+
T Consensus 275 ~~~~ 278 (311)
T KOG1446|consen 275 GGPV 278 (311)
T ss_pred CCCc
Confidence 4333
No 58
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.49 E-value=1.4e-12 Score=146.88 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=89.2
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|++|.+|+=.-.+.-.+++-|..-|.++.|+|||+++||++.||+ |.|||=.+ | ..+.
T Consensus 165 T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGkt-------g----------e~vg 226 (603)
T KOG0318|consen 165 TGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGKT-------G----------EKVG 226 (603)
T ss_pred eccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCCC-------c----------cEEE
Confidence 5677899999987767777889999999999999999999999999886 88999764 4 4677
Q ss_pred EEEe--cccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccc
Q 002778 312 KLHR--GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 312 ~L~R--G~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~ 356 (882)
+|.- +| ...|+.|+||||++.|+++|.|.|++|||+++.....+
T Consensus 227 ~l~~~~aH-kGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 227 ELEDSDAH-KGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST 272 (603)
T ss_pred EecCCCCc-cccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE
Confidence 7741 33 34799999999999999999999999999998754443
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=7.8e-13 Score=153.54 Aligned_cols=177 Identities=18% Similarity=0.234 Sum_probs=141.2
Q ss_pred ccCCeEEEEECCC-----CeE--------EEEEEcCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCc
Q 002778 58 NSPTAVRFYSFQS-----HCY--------EHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVP 121 (882)
Q Consensus 58 ~sp~tVrlWDlkT-----G~~--------V~tLkf~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p 121 (882)
..+++|+|||++- |.. .++|++...|.+|+++| ++|||++ +++++||-+.|++...+|.+|..|
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP 552 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP 552 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccc
Confidence 4689999999741 222 24567889999999996 7999986 889999999999998889888876
Q ss_pred ccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccc
Q 002778 122 QLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTL 201 (882)
Q Consensus 122 ~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktL 201 (882)
. -.|.++| ++
T Consensus 553 V-------------~smDIS~----------------------------------DS----------------------- 562 (888)
T KOG0306|consen 553 V-------------LSMDISP----------------------------------DS----------------------- 562 (888)
T ss_pred e-------------eEEeccC----------------------------------Cc-----------------------
Confidence 2 2333211 11
Q ss_pred cccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE
Q 002778 202 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN 281 (882)
Q Consensus 202 s~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~ 281 (882)
+.+. |++.|..|+||-+.=|.+-+.|-||.+.|.++.|-|...++.|+|.|| .
T Consensus 563 ----------------------kliv----TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~-k 615 (888)
T KOG0306|consen 563 ----------------------KLIV----TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG-K 615 (888)
T ss_pred ----------------------CeEE----eccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcc-e
Confidence 1111 456789999999999999999999999999999999999999999976 5
Q ss_pred EEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 282 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 282 IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
|+-||-.. +.++.+|. ||+ ..|++++-+|+|.+++++|.|.+|++|.-..
T Consensus 616 vKqWDg~k-----------------Fe~iq~L~-~H~-~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 616 VKQWDGEK-----------------FEEIQKLD-GHH-SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEeechhh-----------------hhhheeec-cch-heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999642 24666664 655 4799999999999999999999999998754
No 60
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.47 E-value=1.1e-12 Score=147.44 Aligned_cols=110 Identities=16% Similarity=0.244 Sum_probs=82.1
Q ss_pred ccCCCceEEEEECCCCc-EEEEec-----cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCC
Q 002778 232 DMDNAGIVVVKDFVTRA-IISQFK-----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 305 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~-~v~~f~-----aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ss 305 (882)
+.+.||+++|||+..-+ .+..|+ +-.-++...+|+|||+++|+|..||. |.+|+... |.-
T Consensus 286 T~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~-------------~~v 351 (641)
T KOG0772|consen 286 TCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGS-------------RTV 351 (641)
T ss_pred EecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCC-------------ccc
Confidence 56789999999997643 233332 23457889999999999999999886 99999731 111
Q ss_pred cccEEEEEEecccC-CcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccc
Q 002778 306 SHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 306 s~~~l~~L~RG~t~-a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l 357 (882)
+..+..+..|.. ..|+||+||+||++|++-+.|+|++||||..+......
T Consensus 352 --~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 352 --RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred --ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 223333333333 37999999999999999999999999999988766543
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.2e-12 Score=153.69 Aligned_cols=256 Identities=15% Similarity=0.160 Sum_probs=167.2
Q ss_pred cccccCceEEEEecCCCCC------CCCCcc-cccccccccCccCCCCCccc--ccCCeEEEEECCCCeEEEEEE-cCCc
Q 002778 13 GFRKLHPFLLVVAGEDTNT------LAPGQN-RSHLGGVRDGMMDSQSGNCV--NSPTAVRFYSFQSHCYEHVLR-FRSS 82 (882)
Q Consensus 13 ~f~~~~pll~vv~~d~~~~------~~~~~~-~~~~~~v~~~~~~~~~~~~~--~sp~tVrlWDlkTG~~V~tLk-f~s~ 82 (882)
.|--+||.+|+-.-.+.-. +..... -.|-|+||+.-+-+...=.+ ..+.+|++|+.++.+++.+|. |-+-
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY 95 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY 95 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce
Confidence 4999999988643111100 000111 24668888766533221011 256899999999999999997 8899
Q ss_pred EEEEEEcCC--EEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccce-eeEEcC--cEEEEe--CCCeEe
Q 002778 83 VCMVRCSPR--IVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG-PMAVGP--RWLAYA--SNTLLL 154 (882)
Q Consensus 83 V~sV~~S~r--lLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g-~lAlsp--R~LAys--s~~v~l 154 (882)
|+.+.|.+. .+++ +.|++|+||+-.+.+++.++.+|.. |. ...|-| ..++.+ +.++++
T Consensus 96 VRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH--------------YVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 96 VRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH--------------YVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred eEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce--------------EEEeeccCCccceEEEecccceEEE
Confidence 999999974 4555 4567799999999999999988754 11 223455 555555 358999
Q ss_pred ccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccC
Q 002778 155 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 234 (882)
Q Consensus 155 wdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs 234 (882)
||.+++--.+..| + ++ |. ++. +.. ++ .. + -|.
T Consensus 162 WDisGLRkk~~~p---------g--~~------e~--~~~--------~~~------~~---------~d---L---fg~ 193 (1202)
T KOG0292|consen 162 WDISGLRKKNKAP---------G--SL------ED--QMR--------GQQ------GN---------SD---L---FGQ 193 (1202)
T ss_pred EeecchhccCCCC---------C--Cc------hh--hhh--------ccc------cc---------hh---h---cCC
Confidence 9964432111111 0 00 00 000 000 00 00 0 011
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
.|-. +...+.+|+..|+.+||.|.--++++|+. ++.|++|+.... ..|.+-+ .
T Consensus 194 ~DaV----------VK~VLEGHDRGVNwaAfhpTlpliVSG~D-DRqVKlWrmnet---------------KaWEvDt-c 246 (1202)
T KOG0292|consen 194 TDAV----------VKHVLEGHDRGVNWAAFHPTLPLIVSGAD-DRQVKLWRMNET---------------KAWEVDT-C 246 (1202)
T ss_pred cCee----------eeeeecccccccceEEecCCcceEEecCC-cceeeEEEeccc---------------cceeehh-h
Confidence 1211 23457899999999999999999999997 567999998531 1133333 4
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccc
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~ 358 (882)
|||.+ .|.++-|.|.-..|.+.|.|++|+|||++...+..+++
T Consensus 247 rgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 247 RGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred hcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 78876 69999999999999999999999999999988887774
No 62
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=5.9e-12 Score=133.23 Aligned_cols=176 Identities=22% Similarity=0.296 Sum_probs=133.0
Q ss_pred cCCeEEEEECCCC---eEEEEEE--cCCcEEEEEEcC--CEEEEE-ECCeEEEEECC--CCceeEEEecCCCcccCCCCc
Q 002778 59 SPTAVRFYSFQSH---CYEHVLR--FRSSVCMVRCSP--RIVAVG-LATQIYCFDAL--TLENKFSVLTYPVPQLAGQGA 128 (882)
Q Consensus 59 sp~tVrlWDlkTG---~~V~tLk--f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~--T~e~l~tL~t~p~p~~~~~~~ 128 (882)
.+++||+|++..+ .+...|. |.-.|++|+++| ++||++ +|.++.||.=. +++++.+|.+|.+.
T Consensus 35 ~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE------- 107 (312)
T KOG0645|consen 35 TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE------- 107 (312)
T ss_pred CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc-------
Confidence 4789999999853 3444453 778899999986 888885 58899999644 56788888888763
Q ss_pred ccccccceeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 129 VGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 129 ~g~~~~~g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
.-.+|+++ ++||.
T Consensus 108 ------VK~Vaws~sG~~LAT----------------------------------------------------------- 122 (312)
T KOG0645|consen 108 ------VKCVAWSASGNYLAT----------------------------------------------------------- 122 (312)
T ss_pred ------eeEEEEcCCCCEEEE-----------------------------------------------------------
Confidence 12344433 34433
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~---~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
.+.|..|-||.+..+ .++..|+.|+..|--+.|+|.-.+|||+|.|. +|+
T Consensus 123 --------------------------CSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn-TIk 175 (312)
T KOG0645|consen 123 --------------------------CSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN-TIK 175 (312)
T ss_pred --------------------------eeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC-eEE
Confidence 234556777777633 57889999999999999999999999999965 599
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
+|+-.+. .|| ..+.+| .|+++ .|++++|.+.|..|+++++|+||+||..-
T Consensus 176 ~~~~~~d----------ddW----~c~~tl-~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 176 VYRDEDD----------DDW----ECVQTL-DGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred EEeecCC----------CCe----eEEEEe-cCccc-eEEEEEecCCCceEEEecCCcceEeeeec
Confidence 9997531 234 455666 36554 79999999999999999999999999864
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=3.1e-13 Score=144.95 Aligned_cols=109 Identities=24% Similarity=0.337 Sum_probs=96.5
Q ss_pred ccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
+|++||.|+||.+.+|.++..|. ||+..|++|.||.|+..+.+||.| .++||.-++. | +.+
T Consensus 280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD-~tvRiHGlKS-------G----------K~L 341 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD-QTVRIHGLKS-------G----------KCL 341 (508)
T ss_pred ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc-ceEEEecccc-------c----------hhH
Confidence 56899999999999999999997 999999999999999999999994 5699988863 4 567
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccc
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 360 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H 360 (882)
.++ ||++ .-|....|++||.+|.++|+||||+||+..+..+..+++.-
T Consensus 342 KEf-rGHs-Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 342 KEF-RGHS-SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL 389 (508)
T ss_pred HHh-cCcc-ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC
Confidence 777 6876 46999999999999999999999999999998888777644
No 64
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.45 E-value=2.9e-13 Score=148.86 Aligned_cols=215 Identities=17% Similarity=0.258 Sum_probs=152.0
Q ss_pred CCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC--cEEEEeCC--Ce
Q 002778 80 RSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TL 152 (882)
Q Consensus 80 ~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAyss~--~v 152 (882)
+-.|..|++.+ |+|++| ..+..-+|+..+......+..|..| +..|.+++ .|+..++. -+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~-------------Vr~m~ws~~g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP-------------VRTMKWSHNGTWMISGDKGGMI 162 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc-------------ceeEEEccCCCEEEEcCCCceE
Confidence 45688999986 566665 5678999998665444444456553 34566665 78877664 36
Q ss_pred EeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccc
Q 002778 153 LLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD 232 (882)
Q Consensus 153 ~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~t 232 (882)
++|..... .| |.+..+..+-.. ..+++++ +.+.+ +
T Consensus 163 KyWqpnmn--------------------nV----------------k~~~ahh~eaIR---dlafSpn-DskF~-----t 197 (464)
T KOG0284|consen 163 KYWQPNMN--------------------NV----------------KIIQAHHAEAIR---DLAFSPN-DSKFL-----T 197 (464)
T ss_pred Eecccchh--------------------hh----------------HHhhHhhhhhhh---eeccCCC-CceeE-----E
Confidence 66752100 00 000000000000 1233442 23331 5
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
++.||+|+|||+...+.-..|++|...|.+++|+|.-.+||++|.| +.|++||.+. | .++..
T Consensus 198 ~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskD-nlVKlWDprS-------g----------~cl~t 259 (464)
T KOG0284|consen 198 CSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKD-NLVKLWDPRS-------G----------SCLAT 259 (464)
T ss_pred ecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCC-ceeEeecCCC-------c----------chhhh
Confidence 6889999999999988888999999999999999999999999985 5899999864 3 35666
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCC
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~ 372 (882)
++ +|. ..|..+.|+|++.||+++|.|.++++|||...+....+++|...+.....+|+
T Consensus 260 lh-~HK-ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 260 LH-GHK-NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL 317 (464)
T ss_pred hh-hcc-ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccc
Confidence 64 444 46999999999999999999999999999988888899999876666656664
No 65
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.45 E-value=9.3e-12 Score=146.15 Aligned_cols=119 Identities=19% Similarity=0.248 Sum_probs=87.4
Q ss_pred cCCCceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc----CCCCC-------
Q 002778 233 MDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR----SGSGN------- 298 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f---~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~----~~sG~------- 298 (882)
|...|+|.+|++.+|-....| .+|..+|..|+.+--+++++||+.+|. +++||....... .+...
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr 544 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHR 544 (910)
T ss_pred eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeeee
Confidence 466899999999999888888 699999999999999999999999885 899998642100 00000
Q ss_pred -------CccccC------CcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 299 -------HKYDWN------SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 299 -------~~~d~s------ss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
...+.. ...+.+.+| +||+ .+|++++|||||+||++++.|+||++||+.+....
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f-~gh~-nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVREF-WGHG-NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHHh-hccc-cceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 000000 000111222 4665 58999999999999999999999999999876543
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=9.4e-13 Score=138.20 Aligned_cols=189 Identities=16% Similarity=0.166 Sum_probs=132.4
Q ss_pred cCCeEEEEECCC-CeEEEEEE-cCCcEEEEEEcC---C-EEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 59 SPTAVRFYSFQS-HCYEHVLR-FRSSVCMVRCSP---R-IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 sp~tVrlWDlkT-G~~V~tLk-f~s~V~sV~~S~---r-lLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
-++++||||+.- -..++.++ |...|++|..+. + +|..+.|++|++||....+.+.|+.+|..
T Consensus 81 GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~------------ 148 (311)
T KOG0277|consen 81 GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS------------ 148 (311)
T ss_pred cCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc------------
Confidence 468999999642 34666666 888899999874 3 44445688999999887777777766533
Q ss_pred ccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 133 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 133 ~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
+.|.. .++|....++
T Consensus 149 ------------~Iy~a-----------------------~~sp~~~nlf------------------------------ 163 (311)
T KOG0277|consen 149 ------------CIYQA-----------------------AFSPHIPNLF------------------------------ 163 (311)
T ss_pred ------------EEEEE-----------------------ecCCCCCCeE------------------------------
Confidence 11110 0011111111
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCc
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
+ +++.||+++|||+........|.+|...|.+..|+. +-.+|||++.|+ .||+||+..-
T Consensus 164 ----------------a--s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~-~vr~wDir~~- 223 (311)
T KOG0277|consen 164 ----------------A--SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN-LVRGWDIRNL- 223 (311)
T ss_pred ----------------E--EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCc-eEEEEehhhc-
Confidence 1 346789999999986444445999999999999987 557999999965 6999999642
Q ss_pred ccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECCCCC-Ccccccccc
Q 002778 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFG-GDSGFQTLS 361 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~~~g-g~~~l~~H~ 361 (882)
.+++.+|. |+.- -|..|.|||.. ..||++|-|-|++|||..... ...+..-|+
T Consensus 224 ---------------r~pl~eL~-gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 224 ---------------RTPLFELN-GHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred ---------------cccceeec-CCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 14678884 6554 49999999975 578999999999999987443 333445565
No 67
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.44 E-value=6.1e-12 Score=132.91 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=138.6
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+.++.+|-...|+.+.+++ |.++|+++.++. +.|+.+ .|+++++||+.+|+++.++.+. .|
T Consensus 30 KD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~------------- 95 (327)
T KOG0643|consen 30 KDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SP------------- 95 (327)
T ss_pred CCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-Ce-------------
Confidence 46788999999999999998 999999998874 566665 5778999999999999998752 11
Q ss_pred ceeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 135 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 135 ~g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
...+.|++ .++.+..+.
T Consensus 96 Vk~~~F~~~gn~~l~~tD~------------------------------------------------------------- 114 (327)
T KOG0643|consen 96 VKRVDFSFGGNLILASTDK------------------------------------------------------------- 114 (327)
T ss_pred eEEEeeccCCcEEEEEehh-------------------------------------------------------------
Confidence 11222221 111111100
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECC-------CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~-------s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
.-+..+.|.++|+. +..++..+..+.+.|+.+-|+|-|..|+++..+|. |++|
T Consensus 115 -------------------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~-is~~ 174 (327)
T KOG0643|consen 115 -------------------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS-ISIY 174 (327)
T ss_pred -------------------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc-EEEE
Confidence 01234567777776 45667888889999999999999999999999886 9999
Q ss_pred ecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccc
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 359 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~ 359 (882)
|+.. | ..+.+-.+- +...|.+|.||+|..+++++|.|.|.+|||+.+.....++.+
T Consensus 175 da~~-------g----------~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 175 DART-------G----------KELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred Eccc-------C----------ceeeechhh-hccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 9975 3 122222222 334799999999999999999999999999998766655544
No 68
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.44 E-value=3.6e-12 Score=132.67 Aligned_cols=128 Identities=14% Similarity=0.201 Sum_probs=97.0
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc-----ccC--CCCCCccccCC
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC-----MRS--GSGNHKYDWNS 305 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~-----~~~--~sG~~~~d~ss 305 (882)
++.|..|++||+.+|+++..|++|...|++++|+-+.+.+++||.|- .+|+||..... ..+ ..|..+.+.+.
T Consensus 77 ~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~-s~r~wDCRS~s~ePiQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDS-SVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE 155 (307)
T ss_pred CCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccc-eeEEEEcccCCCCccchhhhhcCceeEEEecc
Confidence 45688899999999999999999999999999999999999999955 59999975321 000 00101111111
Q ss_pred ---------cccEEEEEEeccc-----CCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccccc
Q 002778 306 ---------SHVHLYKLHRGIT-----SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 361 (882)
Q Consensus 306 ---------s~~~l~~L~RG~t-----~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~ 361 (882)
-..+.|.++.|.- ..+|++++||+|++.+.+++.|+|+||-|-++++-.....+|.
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk 225 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK 225 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc
Confidence 0145677766643 2479999999999999999999999999988876666677875
No 69
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.43 E-value=3.9e-12 Score=141.59 Aligned_cols=106 Identities=18% Similarity=0.290 Sum_probs=86.4
Q ss_pred ccCCCceEEEEECC--CCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCccc
Q 002778 232 DMDNAGIVVVKDFV--TRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 308 (882)
Q Consensus 232 tgs~dG~V~VWDl~--s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~ 308 (882)
+.+.||.+.|||++ +.+......+|+.+|.+++|+| ++.+|||||.|++ ++|||++.- . .
T Consensus 245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL------~----------~ 307 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNL------N----------K 307 (422)
T ss_pred eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhc------c----------c
Confidence 34678999999999 5566678889999999999999 6689999999876 899999641 1 3
Q ss_pred EEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECCCCCCccc
Q 002778 309 HLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~~~gg~~~ 356 (882)
.++.+. |+. ..|..|.|||+- ..||+++.|+.++|||+..-++...
T Consensus 308 ~lh~~e-~H~-dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 308 PLHTFE-GHE-DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred Cceecc-CCC-cceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 567764 554 469999999975 6788899999999999988776653
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.43 E-value=2.8e-13 Score=141.80 Aligned_cols=215 Identities=14% Similarity=0.105 Sum_probs=142.5
Q ss_pred ccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEE-EEECCeEEEEECCCCce-eEEEecCCCcccCCCCcccccc
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVA-VGLATQIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLA-V~~d~qI~IWDa~T~e~-l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
..+-+.++||.-||..+++|+|..-|.+|+|+. ..|+ .+.+.-++|||++..+. ...+.+|+. ++
T Consensus 78 aadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg---------~I-- 146 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG---------GI-- 146 (334)
T ss_pred cccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC---------cc--
Confidence 367889999999999999999999999999986 3444 45566789999987652 233333433 11
Q ss_pred cceeeEEcC-cEEEEeC-CCeEeccC--CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccC
Q 002778 134 GYGPMAVGP-RWLAYAS-NTLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 134 ~~g~lAlsp-R~LAyss-~~v~lwdt--G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~ 209 (882)
.......+- ..|..+. .++++||. |.. .|.|..+
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-v~sL~~~----------------------------------------- 184 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTE-VQSLEFN----------------------------------------- 184 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcE-EEEEecC-----------------------------------------
Confidence 111122222 3444333 37999984 221 2222110
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 210 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 210 pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
.+..+.-.+++++.+.+ ...+.|..||..+...++.++.. ..|.+..++|+-..++.++.|+. ++.||..+
T Consensus 185 --s~VtSlEvs~dG~ilTi-----a~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~-~~kfDy~T 255 (334)
T KOG0278|consen 185 --SPVTSLEVSQDGRILTI-----AYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFK-VYKFDYNT 255 (334)
T ss_pred --CCCcceeeccCCCEEEE-----ecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceE-EEEEeccC
Confidence 00000111122333322 24578999999999888887643 46889999999999999998775 78889864
Q ss_pred CcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 290 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 290 ~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
| ..+-.+..|+. .+|.+|.|||||..-|+||.||||+||...+..
T Consensus 256 -------g----------eEi~~~nkgh~-gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 256 -------G----------EEIGSYNKGHF-GPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred -------C----------ceeeecccCCC-CceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 3 12222234655 579999999999999999999999999987653
No 71
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.43 E-value=2.3e-12 Score=149.69 Aligned_cols=245 Identities=15% Similarity=0.131 Sum_probs=174.0
Q ss_pred CCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEEC-CeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~d-~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
.+.|+||+..|+++++++... -+.+..|-| +.+++|.. +.+.+||+....++-++..|.. ..+
T Consensus 393 ~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg-------------aIW 458 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG-------------AIW 458 (888)
T ss_pred CCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc-------------cee
Confidence 389999999999999999877 455556644 56666764 6799999999888777776644 257
Q ss_pred eeEEcC--cEEE--EeCCCeEeccCCCCCCccCCCCCCCCCcC-CCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 137 PMAVGP--RWLA--YASNTLLLSNSGRLSPQNLTPSGVSPSTS-PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 137 ~lAlsp--R~LA--yss~~v~lwdtG~vs~q~lt~~~vs~s~S-P~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
+++++| +..+ .++.++++|+---+ ++ |+....+-. +... ++| + ++
T Consensus 459 si~~~pD~~g~vT~saDktVkfWdf~l~-------------~~~~gt~~k~ls--------l~~~--rtL-----e-l~- 508 (888)
T KOG0306|consen 459 SISLSPDNKGFVTGSADKTVKFWDFKLV-------------VSVPGTQKKVLS--------LKHT--RTL-----E-LE- 508 (888)
T ss_pred eeeecCCCCceEEecCCcEEEEEeEEEE-------------eccCcccceeee--------eccc--eEE-----e-cc-
Confidence 888888 3333 34568999972100 00 000000000 0000 011 0 11
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
......+.+|+++++++ +--|.+|+||-+.+.+..-.+.+|.-||.+|..|||+.+++|+|.|. +|+||-+.-
T Consensus 509 ddvL~v~~Spdgk~LaV----sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK-nVKiWGLdF-- 581 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAV----SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK-NVKIWGLDF-- 581 (888)
T ss_pred ccEEEEEEcCCCcEEEE----EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC-ceEEecccc--
Confidence 11234556677788764 35789999999999999999999999999999999999999999955 599999853
Q ss_pred ccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccC
Q 002778 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 371 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp 371 (882)
|. +-..+ -+|. ..|.+|.|-|+...+.+++.|+.|+-||-..+.....+.+|...+-+..+.|
T Consensus 582 -----GD----------CHKS~-fAHd-DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~ 644 (888)
T KOG0306|consen 582 -----GD----------CHKSF-FAHD-DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP 644 (888)
T ss_pred -----ch----------hhhhh-hccc-CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC
Confidence 31 11122 1343 4699999999999999999999999999999999999999986665555554
Q ss_pred C
Q 002778 372 V 372 (882)
Q Consensus 372 ~ 372 (882)
.
T Consensus 645 ~ 645 (888)
T KOG0306|consen 645 N 645 (888)
T ss_pred C
Confidence 3
No 72
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.41 E-value=4.8e-12 Score=140.84 Aligned_cols=110 Identities=18% Similarity=0.346 Sum_probs=83.2
Q ss_pred ccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCcc--ccCCcc
Q 002778 232 DMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKY--DWNSSH 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~--d~sss~ 307 (882)
+++.|++|.|||+++. +.+.+|.+|...|..|.|||.- +.|||++.|++ ++|||+..- |.... +-....
T Consensus 290 T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~i------g~eq~~eda~dgp 362 (422)
T KOG0264|consen 290 TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRI------GEEQSPEDAEDGP 362 (422)
T ss_pred eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEecccc------ccccChhhhccCC
Confidence 4677999999999986 4678999999999999999964 79999999776 799999532 21100 001111
Q ss_pred cEEEEEEecccCCcEEEEEEccCCCE-EEEEeCCCeEEEEECC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLS 349 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg~~-LAsgS~DGTVhIWdI~ 349 (882)
..+.=.++||+ +.|.+++|+|+..| ||+.+.|+.++||...
T Consensus 363 pEllF~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 363 PELLFIHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cceeEEecCcc-cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 22333467876 57999999999987 5667899999999986
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.41 E-value=1.3e-11 Score=148.39 Aligned_cols=225 Identities=17% Similarity=0.198 Sum_probs=153.2
Q ss_pred cCCeEEEEECCC-------Ce-----------EEEEEE-cCCcEEEEEEcC--CEEEE-EECCeEEEEECCCCceeEEEe
Q 002778 59 SPTAVRFYSFQS-------HC-----------YEHVLR-FRSSVCMVRCSP--RIVAV-GLATQIYCFDALTLENKFSVL 116 (882)
Q Consensus 59 sp~tVrlWDlkT-------G~-----------~V~tLk-f~s~V~sV~~S~--rlLAV-~~d~qI~IWDa~T~e~l~tL~ 116 (882)
.++.|.||.-.. |. ++..|. |++.|.+|.+++ .+||. +.|++|.|||+.|++++.++.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 457888898762 11 555665 889999999997 56665 568999999999999999999
Q ss_pred cCCCcccCCCCcccccccceeeEEcC--cEEEEeC--CCeEeccCCCCCCccC-CCCCCCCCcCCCCCccEEEeeccchh
Q 002778 117 TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNL-TPSGVSPSTSPGGSSLVARYAMEHSK 191 (882)
Q Consensus 117 t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAyss--~~v~lwdtG~vs~q~l-t~~~vs~s~SP~~GslVA~~A~essk 191 (882)
+|... ...+++.| +|+|.-+ .++++|.+..-...+. +.|- ..+|
T Consensus 169 ~H~s~-------------VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf---~~~~--------------- 217 (942)
T KOG0973|consen 169 GHQSL-------------VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF---EESP--------------- 217 (942)
T ss_pred ccccc-------------ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch---hhCC---------------
Confidence 88763 23467888 9999754 3789998643211111 1010 0000
Q ss_pred hhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC----
Q 002778 192 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP---- 267 (882)
Q Consensus 192 ~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP---- 267 (882)
++-+. ..++=+|+++.++.+.+.-...-++.|.+-.+-+.-..|-+|..|+.+++|+|
T Consensus 218 ---------~~T~f---------~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe 279 (942)
T KOG0973|consen 218 ---------LTTFF---------LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFE 279 (942)
T ss_pred ---------Cccee---------eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhc
Confidence 00000 01122334455444332223345788888888888889999999999999998
Q ss_pred ----CCC---------EEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEE
Q 002778 268 ----SGT---------LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 334 (882)
Q Consensus 268 ----dGt---------lLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~L 334 (882)
+|+ .+|+||.|++ |-||..... +.+...+ ...+..|.|++|||||.-|
T Consensus 280 ~~~~ng~~~~~~~~y~i~AvgSqDrS-lSVW~T~~~-----------------RPl~vi~-~lf~~SI~DmsWspdG~~L 340 (942)
T KOG0973|consen 280 RNNKNGTSTQPNCYYCIAAVGSQDRS-LSVWNTALP-----------------RPLFVIH-NLFNKSIVDMSWSPDGFSL 340 (942)
T ss_pred cccccCCccCCCcceEEEEEecCCcc-EEEEecCCC-----------------Cchhhhh-hhhcCceeeeeEcCCCCeE
Confidence 221 5788888765 899998421 3443332 2234579999999999999
Q ss_pred EEEeCCCeEEEEECCCC
Q 002778 335 AIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 335 AsgS~DGTVhIWdI~~~ 351 (882)
.++|.||||.++.++..
T Consensus 341 facS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 341 FACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEecCCeEEEEEcchH
Confidence 99999999999998753
No 74
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=4.7e-12 Score=144.87 Aligned_cols=206 Identities=17% Similarity=0.172 Sum_probs=148.2
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCC--EEEEE-ECCeEEEEECCCC-ceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVG-LATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~r--lLAV~-~d~qI~IWDa~T~-e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+..||||+..|++.|++++ |++-|++|+..|. .+.++ .|-.|++||-... .+.+++.+|..=
T Consensus 75 DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy------------ 142 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY------------ 142 (794)
T ss_pred CCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE------------
Confidence 56889999999999999998 8899999999873 44444 4557999998754 356777766540
Q ss_pred cceeeEEcC---cEEEEe--CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccc----
Q 002778 134 GYGPMAVGP---RWLAYA--SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY---- 204 (882)
Q Consensus 134 ~~g~lAlsp---R~LAys--s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~---- 204 (882)
.=.++|.| ...|.+ +.++++|..|.-.|- .||.+|
T Consensus 143 -VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n-----------------------------------fTl~gHekGV 186 (794)
T KOG0276|consen 143 -VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN-----------------------------------FTLEGHEKGV 186 (794)
T ss_pred -EEEEEecCCCccceeeeeccccEEEEEcCCCCCc-----------------------------------eeeeccccCc
Confidence 12356666 445544 468999987632110 111111
Q ss_pred -ccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 002778 205 -CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 205 -~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
|-++++.| +..++. +|..|-+|+|||..+..+++++.+|+..|+++.|.|.=.+++|+|.||+ +|
T Consensus 187 N~Vdyy~~g---------dkpylI----sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vr 252 (794)
T KOG0276|consen 187 NCVDYYTGG---------DKPYLI----SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VR 252 (794)
T ss_pred ceEEeccCC---------CcceEE----ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EE
Confidence 11222222 111221 5678999999999999999999999999999999999999999999987 89
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEE
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhI 345 (882)
||...+. +....|.-|. .+||+|+-.+.++.+|+|.+.|.|.|
T Consensus 253 iWhs~Ty-----------------~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 253 IWNSKTY-----------------KLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EecCcce-----------------ehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9998542 1222222233 36999999999999999999987754
No 75
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.40 E-value=1.4e-12 Score=152.11 Aligned_cols=197 Identities=15% Similarity=0.227 Sum_probs=134.1
Q ss_pred Ccccc---cCCeEEEEECCC---CeEEEEEE-cCCcEEEEEEcC---CEEEEE-ECCeEEEEECCCCceeEEEecCCCcc
Q 002778 54 GNCVN---SPTAVRFYSFQS---HCYEHVLR-FRSSVCMVRCSP---RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQ 122 (882)
Q Consensus 54 ~~~~~---sp~tVrlWDlkT---G~~V~tLk-f~s~V~sV~~S~---rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~ 122 (882)
.|+|+ .-+.|.+||+.. .+.+..|. |.-.|..+.|+. .+|++| .|+.|++||++.-+...+......
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE-- 177 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE-- 177 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch--
Confidence 44553 348899999976 44444454 777899999974 677765 588999999987665544433111
Q ss_pred cCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccc
Q 002778 123 LAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLS 202 (882)
Q Consensus 123 ~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs 202 (882)
.. |-++|+.. .+.
T Consensus 178 -----------Si-------RDV~fsp~---------------------------~~~---------------------- 190 (839)
T KOG0269|consen 178 -----------SI-------RDVKFSPG---------------------------YGN---------------------- 190 (839)
T ss_pred -----------hh-------hceeeccC---------------------------CCc----------------------
Confidence 01 22222210 000
Q ss_pred ccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE
Q 002778 203 KYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNN 281 (882)
Q Consensus 203 ~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~ 281 (882)
. ++ ++...|.+++||+... ++..+|.||.+||.++.|+|++.+||||+.|+ .
T Consensus 191 ---------------------~---F~--s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK-~ 243 (839)
T KOG0269|consen 191 ---------------------K---FA--SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK-M 243 (839)
T ss_pred ---------------------e---EE--EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc-c
Confidence 0 01 3456799999999864 56788999999999999999999999999865 5
Q ss_pred EEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCE-EEEEeC--CCeEEEEECCC-CCCcccc
Q 002778 282 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW-IAIVSS--KGTCHVFVLSP-FGGDSGF 357 (882)
Q Consensus 282 IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~-LAsgS~--DGTVhIWdI~~-~gg~~~l 357 (882)
|+||+.... ....+..+. +.++|..|.|-|+-++ ||+++. |-.||||||.. +=--.++
T Consensus 244 vkiWd~t~~---------------~~~~~~tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~ 305 (839)
T KOG0269|consen 244 VKIWDMTDS---------------RAKPKHTIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF 305 (839)
T ss_pred EEEEeccCC---------------CccceeEEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee
Confidence 999998531 112334443 4578999999999876 566653 77899999964 4444567
Q ss_pred ccccCCC
Q 002778 358 QTLSSQG 364 (882)
Q Consensus 358 ~~H~~~~ 364 (882)
..|...+
T Consensus 306 ~eH~~~v 312 (839)
T KOG0269|consen 306 LEHTDSV 312 (839)
T ss_pred eccCccc
Confidence 8887433
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.3e-12 Score=140.34 Aligned_cols=216 Identities=13% Similarity=0.168 Sum_probs=152.7
Q ss_pred cCCeEEEEECCCCeEEEEEE---------cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEe-cCCCcccCC
Q 002778 59 SPTAVRFYSFQSHCYEHVLR---------FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVL-TYPVPQLAG 125 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk---------f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~-t~p~p~~~~ 125 (882)
.++-|.+||.-+|+..+.|+ +..+|+++.|++ ..||.| .|++|+||.+.||.|++.+. .|..
T Consensus 233 vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk----- 307 (508)
T KOG0275|consen 233 VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK----- 307 (508)
T ss_pred ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc-----
Confidence 57899999999999888775 467899999998 478886 48899999999999998886 3433
Q ss_pred CCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccc
Q 002778 126 QGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 205 (882)
Q Consensus 126 ~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~ 205 (882)
+..+ |.|+-+ +..+
T Consensus 308 ----------Gvt~-----l~FSrD---------------------------~Sqi------------------------ 321 (508)
T KOG0275|consen 308 ----------GVTC-----LSFSRD---------------------------NSQI------------------------ 321 (508)
T ss_pred ----------CeeE-----EEEccC---------------------------cchh------------------------
Confidence 1112 223221 1000
Q ss_pred cccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 206 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 206 ~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
+ +++.|.+|+|.-+.+|++++.|++|++-|+...|.+||..+.+||.||+ |+||
T Consensus 322 ----------------------L---S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt-vkvW 375 (508)
T KOG0275|consen 322 ----------------------L---SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT-VKVW 375 (508)
T ss_pred ----------------------h---cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc-EEEe
Confidence 0 3467899999999999999999999999999999999999999999887 8999
Q ss_pred ecCCCcccCCCCCCcccc--------CCcc-------------------cEEEEEEeccc-CCcEEEEEEccCCCEEEEE
Q 002778 286 RIMPSCMRSGSGNHKYDW--------NSSH-------------------VHLYKLHRGIT-SATIQDICFSHYSQWIAIV 337 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~--------sss~-------------------~~l~~L~RG~t-~a~I~sLaFSPDg~~LAsg 337 (882)
+.++....+.-...+.|. ..+. +.+..+..|.. ....-+.+.||-|.|+-+.
T Consensus 376 ~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYci 455 (508)
T KOG0275|consen 376 HGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCI 455 (508)
T ss_pred cCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEE
Confidence 987642111000000000 0000 11112211211 1134456799999999999
Q ss_pred eCCCeEEEEECCCCCCccccccccCCCCCCcccC
Q 002778 338 SSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 371 (882)
Q Consensus 338 S~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp 371 (882)
+.|+...-|.+..++-+.++.-|...+.|..-+|
T Consensus 456 gED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 456 GEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP 489 (508)
T ss_pred ccCcEEEEEEeecCceeeeeecccccccccccCc
Confidence 9999999999998888888877776666544444
No 77
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.38 E-value=5.4e-11 Score=129.93 Aligned_cols=263 Identities=18% Similarity=0.188 Sum_probs=151.5
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEe----------cCCCc----
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVL----------TYPVP---- 121 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~----------t~p~p---- 121 (882)
+....||++.+|....++. |...|..+.|+. .+||+| +++.|+||++.++.....+. .||.-
T Consensus 85 DD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ill 164 (399)
T KOG0296|consen 85 DDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILL 164 (399)
T ss_pred CceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEE
Confidence 5678899999999888886 899999999975 677776 58899999999988766663 23320
Q ss_pred --------------c-cCCCCcccccccceeeEEcC---cEE-EEeCCCeEeccC--CCCCCc------cCCCCCCCCCc
Q 002778 122 --------------Q-LAGQGAVGINVGYGPMAVGP---RWL-AYASNTLLLSNS--GRLSPQ------NLTPSGVSPST 174 (882)
Q Consensus 122 --------------~-~~~~~~~g~~~~~g~lAlsp---R~L-Ayss~~v~lwdt--G~vs~q------~lt~~~vs~s~ 174 (882)
. ..++-++|.+.....=.|.| |.+ +|.+.++++|+. |.. .. ++..+.+...
T Consensus 165 AG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p-~~~~~~~e~~~~~~~~~~- 242 (399)
T KOG0296|consen 165 AGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP-LHKITQAEGLELPCISLN- 242 (399)
T ss_pred eecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce-eEEecccccCcCCccccc-
Confidence 0 00111111111000111112 222 355567777873 311 11 1111222111
Q ss_pred CCCCCccEEEeeccchhhhhcc-ccccc---cccccccCCCCC--CCCccCCCccccccccccccCCCceEEEEECCCCc
Q 002778 175 SPGGSSLVARYAMEHSKQFAAG-LSKTL---SKYCQELLPDGS--SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 248 (882)
Q Consensus 175 SP~~GslVA~~A~essk~la~G-liktL---s~~~~~l~pdgs--~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~ 248 (882)
..+.++....++....+... .-|.+ .+....+.+... ...+-+.+....+-++ +.|..||+|.|||+.+.+
T Consensus 243 --~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~-A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 243 --LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA-ACGSVDGTIAIYDLAAST 319 (399)
T ss_pred --cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh-hcccccceEEEEecccch
Confidence 11222222222221111100 00111 110111111110 0011111111112222 267899999999998766
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS 328 (882)
. +++-.|..+|..|.|.+ -.+|+||..+|. ||.||.++ | +.++++ +||. ..|++++.+
T Consensus 320 ~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g~-v~~wDaRt-------G----------~l~~~y-~GH~-~~Il~f~ls 377 (399)
T KOG0296|consen 320 L-RHICEHEDGVTKLKWLN-TDYLLTACANGK-VRQWDART-------G----------QLKFTY-TGHQ-MGILDFALS 377 (399)
T ss_pred h-heeccCCCceEEEEEcC-cchheeeccCce-EEeeeccc-------c----------ceEEEE-ecCc-hheeEEEEc
Confidence 4 44456999999999999 567888888785 99999975 4 355554 6865 579999999
Q ss_pred cCCCEEEEEeCCCeEEEEECC
Q 002778 329 HYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 329 PDg~~LAsgS~DGTVhIWdI~ 349 (882)
||.++++++|.|+|.+||.+.
T Consensus 378 ~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999874
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=7.1e-12 Score=140.51 Aligned_cols=210 Identities=18% Similarity=0.200 Sum_probs=141.3
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEECC-eEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~-qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
..+.|+|+|+++...++.+. |..+|..+.|.+ ..++.|.|+ .+++||+.+......+.+|..=
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY------------ 155 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY------------ 155 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce------------
Confidence 34889999999988888887 889999999987 356666665 4799999999876677777651
Q ss_pred cceeeEEcC--c-EEEEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 134 GYGPMAVGP--R-WLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 134 ~~g~lAlsp--R-~LAyss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
....++.| + .++..+ ..+++|++-.. + ..++.+-. | |
T Consensus 156 -VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~-----~-------------~~v~elnh--------g--------~--- 197 (487)
T KOG0310|consen 156 -VRCGDISPANDHIVVTGSYDGKVRLWDTRSL-----T-------------SRVVELNH--------G--------C--- 197 (487)
T ss_pred -eEeeccccCCCeEEEecCCCceEEEEEeccC-----C-------------ceeEEecC--------C--------C---
Confidence 23455555 3 444444 36899986211 0 01111000 0 0
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEec
Q 002778 209 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 287 (882)
Q Consensus 209 ~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~-~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi 287 (882)
| ...+.+-+.+..++.++ ...|+|||+.+|. .+..+..|...|+||+|..+++.|.|||.|++ ++|||+
T Consensus 198 -p---Ve~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~ 267 (487)
T KOG0310|consen 198 -P---VESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDT 267 (487)
T ss_pred -c---eeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEc
Confidence 0 00011111222333221 2479999999654 45555569999999999999999999999887 899997
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
... +.++.+ + -+++|.+|+.|||++.+++|-.+|.+-+=+.
T Consensus 268 t~~-----------------Kvv~s~--~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 268 TNY-----------------KVVHSW--K-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred cce-----------------EEEEee--e-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 421 233332 2 2468999999999999999999999877533
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.38 E-value=1.2e-11 Score=137.13 Aligned_cols=234 Identities=15% Similarity=0.192 Sum_probs=148.5
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCC--EEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~r--lLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.++++-++|-.+++.+.+|+ |.-.|.+|.+++. .++++ .+..|+||.+.+-.....+..|..|.
T Consensus 239 ~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V------------ 306 (506)
T KOG0289|consen 239 EDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPV------------ 306 (506)
T ss_pred CCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccc------------
Confidence 46788899999999999998 7778999999984 44444 35679999987766554444444431
Q ss_pred ceeeEEcC--cEEEEeCCC-eE-eccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccch-hhhhccccccccccccccC
Q 002778 135 YGPMAVGP--RWLAYASNT-LL-LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS-KQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 135 ~g~lAlsp--R~LAyss~~-v~-lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~ess-k~la~GliktLs~~~~~l~ 209 (882)
..+.+.| .||-.+++. -. +.+. ..|+.+.....+.+ ..+
T Consensus 307 -~~ls~h~tgeYllsAs~d~~w~Fsd~-------------------~~g~~lt~vs~~~s~v~~---------------- 350 (506)
T KOG0289|consen 307 -TGLSLHPTGEYLLSASNDGTWAFSDI-------------------SSGSQLTVVSDETSDVEY---------------- 350 (506)
T ss_pred -eeeeeccCCcEEEEecCCceEEEEEc-------------------cCCcEEEEEeecccccee----------------
Confidence 1222323 555444432 11 1110 01111111111100 000
Q ss_pred CCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 210 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 210 pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
.+..+-+++-.. ++|..||.|+|||+.++..++.|.+|+++|.+|+|+-+|-+|||+..||. |++||++.
T Consensus 351 -----ts~~fHpDgLif----gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRK 420 (506)
T KOG0289|consen 351 -----TSAAFHPDGLIF----GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRK 420 (506)
T ss_pred -----EEeeEcCCceEE----eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehh
Confidence 011122222222 26788999999999999999999999999999999999999999999776 99999964
Q ss_pred CcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC--CCCccccccccCCCCCC
Q 002778 290 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP--FGGDSGFQTLSSQGGDP 367 (882)
Q Consensus 290 ~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~--~gg~~~l~~H~~~~~~~ 367 (882)
. +.+.++.-. ....|.+++|-+.|++|++++.|=+|++++-.+ ..+...+..|...+++.
T Consensus 421 l-----------------~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v 482 (506)
T KOG0289|consen 421 L-----------------KNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGV 482 (506)
T ss_pred h-----------------cccceeecc-ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccccee
Confidence 1 112222111 122589999999999999999988888887432 23344455555444443
Q ss_pred c
Q 002778 368 Y 368 (882)
Q Consensus 368 ~ 368 (882)
.
T Consensus 483 ~ 483 (506)
T KOG0289|consen 483 R 483 (506)
T ss_pred e
Confidence 3
No 80
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.38 E-value=1.8e-11 Score=130.97 Aligned_cols=239 Identities=17% Similarity=0.148 Sum_probs=149.4
Q ss_pred EecCCCCCCCCCcccccccccccCccCCCCCccc---ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEE
Q 002778 24 VAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVG 96 (882)
Q Consensus 24 v~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~ 96 (882)
|.+|..+..- .. ||.|+|-+...... +|.+ ..+++|+.||+++|++++.++ |.+-|.++..++ .+|.++
T Consensus 76 v~gdceN~~~--lk-gHsgAVM~l~~~~d-~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg 151 (338)
T KOG0265|consen 76 VYGDCENFWV--LK-GHSGAVMELHGMRD-GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSG 151 (338)
T ss_pred ccccccceee--ec-cccceeEeeeeccC-CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEec
Confidence 4566665533 22 78888844333322 3333 468999999999999999988 556666666443 566666
Q ss_pred E-CCeEEEEECCCCceeEEEec-CCCcccCCCCcccccccceeeEEcC---c-EEEEeCCCeEeccCCCCCCccCCCCCC
Q 002778 97 L-ATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP---R-WLAYASNTLLLSNSGRLSPQNLTPSGV 170 (882)
Q Consensus 97 ~-d~qI~IWDa~T~e~l~tL~t-~p~p~~~~~~~~g~~~~~g~lAlsp---R-~LAyss~~v~lwdtG~vs~q~lt~~~v 170 (882)
. |+++++||+++.+.++++.. ++. .+++|.- + ..+--++.+++|+.-+..
T Consensus 152 sdD~t~kl~D~R~k~~~~t~~~kyql---------------tAv~f~d~s~qv~sggIdn~ikvWd~r~~d--------- 207 (338)
T KOG0265|consen 152 SDDGTLKLWDIRKKEAIKTFENKYQL---------------TAVGFKDTSDQVISGGIDNDIKVWDLRKND--------- 207 (338)
T ss_pred CCCceEEEEeecccchhhccccceeE---------------EEEEecccccceeeccccCceeeeccccCc---------
Confidence 5 57899999997776666531 111 1222211 1 112224567888741110
Q ss_pred CCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECC----C
Q 002778 171 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV----T 246 (882)
Q Consensus 171 s~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~----s 246 (882)
+..+-+...| ++++.. +.+.| ..+. +-+.|.+|++||+. .
T Consensus 208 --------~~~~lsGh~D-----------tIt~ls--ls~~g-----------s~ll----snsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 208 --------GLYTLSGHAD-----------TITGLS--LSRYG-----------SFLL----SNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred --------ceEEeecccC-----------ceeeEE--eccCC-----------Cccc----cccccceEEEEEecccCCC
Confidence 0000000000 111100 11112 1110 23578999999986 3
Q ss_pred CcEEEEeccCCC----CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcE
Q 002778 247 RAIISQFKAHTS----PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI 322 (882)
Q Consensus 247 ~~~v~~f~aH~s----pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I 322 (882)
.+++..|.+|.. .....+++|+++.+..+|.| +.+.|||... ...+|+|. |+. ..|
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d-r~vyvwd~~~-----------------r~~lyklp-Gh~-gsv 311 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD-RFVYVWDTTS-----------------RRILYKLP-GHY-GSV 311 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCcccccccc-ceEEEeeccc-----------------ccEEEEcC-Ccc-eeE
Confidence 467899988754 35567899999999888885 5688999842 14788885 665 479
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEE
Q 002778 323 QDICFSHYSQWIAIVSSKGTCHVF 346 (882)
Q Consensus 323 ~sLaFSPDg~~LAsgS~DGTVhIW 346 (882)
..++|.|...+|.++++|.||.+=
T Consensus 312 n~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 312 NEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EEeeecCCCcEEEEeccCceeEee
Confidence 999999999999999999999863
No 81
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.37 E-value=1.8e-12 Score=142.67 Aligned_cols=180 Identities=16% Similarity=0.179 Sum_probs=137.6
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+++|+|||..-.+.-..|. |.-.|.+|++.| .+||++. |+.|++||.+++.++.++..|.+.
T Consensus 200 dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKnt------------- 266 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNT------------- 266 (464)
T ss_pred CCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccce-------------
Confidence 57999999999988888887 666799999988 5777776 456999999999999999877662
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
.+++ .|..+.
T Consensus 267 --Vl~~-----~f~~n~--------------------------------------------------------------- 276 (464)
T KOG0284|consen 267 --VLAV-----KFNPNG--------------------------------------------------------------- 276 (464)
T ss_pred --EEEE-----EEcCCC---------------------------------------------------------------
Confidence 2221 111110
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEecCCCccc
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
.+++ +++.|..++|+|+.+.+.+..+++|+..|.+++++|= -.+|+|++.||. |..|.+-..
T Consensus 277 ---------N~Ll----t~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~--- 339 (464)
T KOG0284|consen 277 ---------NWLL----TGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLE--- 339 (464)
T ss_pred ---------CeeE----EccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEecccc---
Confidence 0111 3567889999999999999999999999999999994 468889999886 789988411
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
..+-.+.-++. ..|++++|.|=|..||+||.|.|++.|.-...+.
T Consensus 340 --------------~p~~~i~~AHd-~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d 384 (464)
T KOG0284|consen 340 --------------EPLGEIPPAHD-GEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGD 384 (464)
T ss_pred --------------ccccCCCcccc-cceeeeeccccceeEeecCCCcceeeeccCCCCC
Confidence 12233323333 3699999999999999999999999998765443
No 82
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=4.4e-11 Score=126.73 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=88.6
Q ss_pred cCCCceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 233 MDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 233 gs~dG~V~VWDl~s~--~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
|+.|+++.||.-..+ +++.+|.+|...|-+++||++|.+|||+|. ++.+-||.+.. + ..+...
T Consensus 79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR-DKSVWiWe~de-------d-------dEfec~ 143 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR-DKSVWIWEIDE-------D-------DEFECI 143 (312)
T ss_pred eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC-CCeEEEEEecC-------C-------CcEEEE
Confidence 456778888876644 689999999999999999999999999998 55689999952 1 123345
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC---CCcccccccc
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF---GGDSGFQTLS 361 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~---gg~~~l~~H~ 361 (882)
..| .+|++ .|.-+.|.|.-..|+++|-|.||++|+-.+. .+..++.+|+
T Consensus 144 aVL-~~Htq-DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~ 195 (312)
T KOG0645|consen 144 AVL-QEHTQ-DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE 195 (312)
T ss_pred eee-ccccc-cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc
Confidence 555 35554 6899999999999999999999999988752 2356778886
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=1.3e-11 Score=142.08 Aligned_cols=106 Identities=16% Similarity=0.061 Sum_probs=88.5
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
.|+..+.+++||..+.+.+..|++|+..|.+|..++||+.+.|||.||+ |||||+.- .+++.
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgq-----------------QrCl~ 249 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQ-----------------QRCLA 249 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccc-----------------cceee
Confidence 3567789999999999999999999999999999999999999999886 99999931 14555
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccc
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l 357 (882)
++. -++ ..||++.-+|+=+.+-+|+.||.|..=|+..+.....+
T Consensus 250 T~~-vH~-e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli 293 (735)
T KOG0308|consen 250 TYI-VHK-EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI 293 (735)
T ss_pred eEE-ecc-CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence 553 333 35999999999999999999999999899876444433
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.37 E-value=5.6e-12 Score=139.11 Aligned_cols=174 Identities=16% Similarity=0.242 Sum_probs=130.5
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcCCEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccccccee
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 137 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~ 137 (882)
.+.+||+||+.++.|.+++-+.+.+.+|.++...++++ +|++|++||+++..+..++..+.. +..
T Consensus 281 ~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~--------------vtS 346 (459)
T KOG0288|consen 281 ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGR--------------VTS 346 (459)
T ss_pred ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcc--------------eee
Confidence 58999999999999999998899999999997777776 478899999999888776632211 112
Q ss_pred eEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCc
Q 002778 138 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 217 (882)
Q Consensus 138 lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~ 217 (882)
+.+++ ++-.+
T Consensus 347 l~ls~----------------------------------~g~~l------------------------------------ 356 (459)
T KOG0288|consen 347 LDLSM----------------------------------DGLEL------------------------------------ 356 (459)
T ss_pred Eeecc----------------------------------CCeEE------------------------------------
Confidence 22111 00000
Q ss_pred cCCCccccccccccccCCCceEEEEECCCCcEEEEeccC----CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc
Q 002778 218 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 218 S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH----~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
+ +...|.++.+.|+.+..+...|.|- .+..+.+.|||+|.|+|+||.||. |.||++..
T Consensus 357 ----------L---sssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~t---- 418 (459)
T KOG0288|consen 357 ----------L---SSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFT---- 418 (459)
T ss_pred ----------e---eecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccC----
Confidence 0 1134667888888888877777652 234789999999999999999887 89999964
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
| +....+.....++-|.+++|+|-|.+|++++.++++.||.
T Consensus 419 ---g----------KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 419 ---G----------KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ---c----------eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 3 3555555444444699999999999999999999999993
No 85
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.37 E-value=2e-11 Score=133.72 Aligned_cols=176 Identities=16% Similarity=0.183 Sum_probs=129.0
Q ss_pred ccCCeEEEEEC-------------------------CCCeEEEEEE-cCCcEEEEEEcCC--EEEEEECCeEEEEECCCC
Q 002778 58 NSPTAVRFYSF-------------------------QSHCYEHVLR-FRSSVCMVRCSPR--IVAVGLATQIYCFDALTL 109 (882)
Q Consensus 58 ~sp~tVrlWDl-------------------------kTG~~V~tLk-f~s~V~sV~~S~r--lLAV~~d~qI~IWDa~T~ 109 (882)
..+++|+||+. .++..+-+|. |...|.+|.++.. ...++.|.+|+.||+.++
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecc
Confidence 36899999992 2344555665 8999999999873 445677999999999999
Q ss_pred ceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccc
Q 002778 110 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 189 (882)
Q Consensus 110 e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~es 189 (882)
.+.-++.+... +..+ +|.+..
T Consensus 292 ~~~~~~~~~ks--------------l~~i-------~~~~~~-------------------------------------- 312 (423)
T KOG0313|consen 292 GLKSTLTTNKS--------------LNCI-------SYSPLS-------------------------------------- 312 (423)
T ss_pred cceeeeecCcc--------------eeEe-------eccccc--------------------------------------
Confidence 98888765322 1222 222110
Q ss_pred hhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCc---EEEEeccCCCCeEEEEEC
Q 002778 190 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFD 266 (882)
Q Consensus 190 sk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~---~v~~f~aH~spIsaLaFS 266 (882)
+.++ +|+.|..++|||.+++. +..+|.+|+..|.++.++
T Consensus 313 ----------------------------------~Ll~----~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 313 ----------------------------------KLLA----SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred ----------------------------------ceee----ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence 0000 24567789999988753 457899999999999999
Q ss_pred CCCC-EEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEE
Q 002778 267 PSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 267 PdGt-lLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhI 345 (882)
|... +|+++|.|++ +++||++.. ...+|.+.+. +..|.++.|+ ++..|++|+.|.+++|
T Consensus 355 p~~~~~~~S~S~D~t-~klWDvRS~----------------k~plydI~~h--~DKvl~vdW~-~~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNT-VKLWDVRST----------------KAPLYDIAGH--NDKVLSVDWN-EGGLIVSGGADNKLRI 414 (423)
T ss_pred CCCceEEEEEecCCe-EEEEEeccC----------------CCcceeeccC--CceEEEEecc-CCceEEeccCcceEEE
Confidence 9775 6788998765 899999641 1278998743 4589999996 5779999999999999
Q ss_pred EECCC
Q 002778 346 FVLSP 350 (882)
Q Consensus 346 WdI~~ 350 (882)
|.-.+
T Consensus 415 ~~~~~ 419 (423)
T KOG0313|consen 415 FKGSP 419 (423)
T ss_pred ecccc
Confidence 97544
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.36 E-value=4.3e-11 Score=126.29 Aligned_cols=217 Identities=16% Similarity=0.184 Sum_probs=139.3
Q ss_pred cccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 57 VNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 57 ~~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
++.+++|++||.+++++++.+.-...=..+.++| ..++++. ++.|-+.|+++.+...+..- +..
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e------------ 149 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFE------------ 149 (313)
T ss_pred ecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cce------------
Confidence 3578999999999999999998665544567776 5666665 77899999998765544321 000
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
.+-+++.. ++.+-+-..|--..+.|.-|..-+. +++..|. .+
T Consensus 150 -~ne~~w~~------~nd~Fflt~GlG~v~ILsypsLkpv-------------------------~si~AH~------sn 191 (313)
T KOG1407|consen 150 -VNEISWNN------SNDLFFLTNGLGCVEILSYPSLKPV-------------------------QSIKAHP------SN 191 (313)
T ss_pred -eeeeeecC------CCCEEEEecCCceEEEEeccccccc-------------------------cccccCC------cc
Confidence 01111110 1111111111000011111000000 0111110 01
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
-..+.++|.+++.+ +|+.|-.|-+||+...-++..|.-|.-||..|.||.||++||+||. ++.|-|=++.+
T Consensus 192 CicI~f~p~GryfA----~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE-Dh~IDIA~vet---- 262 (313)
T KOG1407|consen 192 CICIEFDPDGRYFA----TGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE-DHFIDIAEVET---- 262 (313)
T ss_pred eEEEEECCCCceEe----eccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc-cceEEeEeccc----
Confidence 12345677788866 6788999999999999999999999999999999999999999998 56777766654
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC---------CeEEEEECC
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK---------GTCHVFVLS 349 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D---------GTVhIWdI~ 349 (882)
| .+++++. +.++-..|||.|....||-+.+| |+|+||-+.
T Consensus 263 ---G----------d~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 263 ---G----------DRVWEIP---CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ---C----------CeEEEee---ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 4 4677764 34567899999999999988765 566666543
No 87
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.36 E-value=3e-11 Score=142.35 Aligned_cols=103 Identities=17% Similarity=0.284 Sum_probs=85.0
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
+++.|.+|+||++....+++.|. |.+-|+|++|+| |.+++++||.||. ||||+|... ....-
T Consensus 385 SSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~---------------~Vv~W 447 (712)
T KOG0283|consen 385 SSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDK---------------KVVDW 447 (712)
T ss_pred eccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc-eEEeecCcC---------------eeEee
Confidence 56899999999999999999996 999999999999 7799999999886 999999531 01111
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccc
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~ 356 (882)
+.+ ...|++++|+|||++.++|+.+|.|++|+.....-...
T Consensus 448 ~Dl-----~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 448 NDL-----RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred hhh-----hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 222 24699999999999999999999999999876544433
No 88
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.1e-12 Score=151.90 Aligned_cols=120 Identities=17% Similarity=0.289 Sum_probs=99.8
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
|.++|+|++||++..+.+.+|.+|..++..|.|+|-|.+.|++|.|+ .+++||++.- | +.+.
T Consensus 88 gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdt-d~~iwD~Rk~------G-----------c~~~ 149 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDT-DLKIWDIRKK------G-----------CSHT 149 (825)
T ss_pred cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccc-cceehhhhcc------C-----------ceee
Confidence 56789999999999999999999999999999999999999999965 5999999631 3 3343
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCC
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~ 372 (882)
+ +| +...|..+.|+|||+|++.+++|.+++|||+..+.-...|.+|...+...-++|.
T Consensus 150 ~-~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 150 Y-KS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL 207 (825)
T ss_pred e-cC-CcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCch
Confidence 3 45 4457999999999999999999999999999887777788888766554445553
No 89
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.33 E-value=5.3e-11 Score=130.45 Aligned_cols=245 Identities=15% Similarity=0.127 Sum_probs=151.1
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEE---cCC---EEEEEECCeEEEEECCCCceeEE----EecCCCcccCCCC
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRC---SPR---IVAVGLATQIYCFDALTLENKFS----VLTYPVPQLAGQG 127 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~---S~r---lLAV~~d~qI~IWDa~T~e~l~t----L~t~p~p~~~~~~ 127 (882)
+++++|+||. .|++++++. |.++|.+++. +.. +|..+.|+++.+|-...++..-. -.+|..
T Consensus 123 YDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~------- 194 (423)
T KOG0313|consen 123 YDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR------- 194 (423)
T ss_pred cCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc-------
Confidence 6899999997 689999987 8899998775 222 44456678899998776653221 123332
Q ss_pred cccccccceeeEEcC---cEEEEe-CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcc------c
Q 002778 128 AVGINVGYGPMAVGP---RWLAYA-SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG------L 197 (882)
Q Consensus 128 ~~g~~~~~g~lAlsp---R~LAys-s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~G------l 197 (882)
....+++.+ |++.-+ +..+.+|+...-.-..+.. . . .+.+.++...+ .
T Consensus 195 ------~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~--~------s--------~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 195 ------SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELES--S------S--------NRRRKKQKREKEGGTRTP 252 (423)
T ss_pred ------ceeEEEecCCCCeEEeecccceeeecccCCCccccccc--c------c--------hhhhhhhhhhhcccccCc
Confidence 223444433 443322 4578899821000000000 0 0 01111111111 0
Q ss_pred cccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 002778 198 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 277 (882)
Q Consensus 198 iktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~ 277 (882)
+-++.+|.... +.+.++. + .+ ..+++.|-+|++||+.++..+..+.+. .++.++..+|...+||+||.
T Consensus 253 ~vtl~GHt~~V----s~V~w~d-~--~v----~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 253 LVTLEGHTEPV----SSVVWSD-A--TV----IYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred eEEecccccce----eeEEEcC-C--Cc----eEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCC
Confidence 11333332110 0111111 1 11 115689999999999999988887754 68999999999999999999
Q ss_pred CCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCE-EEEEeCCCeEEEEECCCCCC-cc
Q 002778 278 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLSPFGG-DS 355 (882)
Q Consensus 278 dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~-LAsgS~DGTVhIWdI~~~gg-~~ 355 (882)
|- .|||||-+. +.| + ...+.| -||.+ .|.++.|||-..+ |+++|.|+|+++||+....+ ..
T Consensus 321 dr-~irl~DPR~-----~~g--------s-~v~~s~-~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ply 383 (423)
T KOG0313|consen 321 DR-HIRLWDPRT-----GDG--------S-VVSQSL-IGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY 383 (423)
T ss_pred CC-ceeecCCCC-----CCC--------c-eeEEee-ecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcce
Confidence 65 599999653 122 1 223344 47665 8999999997754 78899999999999988764 45
Q ss_pred ccccccC
Q 002778 356 GFQTLSS 362 (882)
Q Consensus 356 ~l~~H~~ 362 (882)
.+.+|+.
T Consensus 384 dI~~h~D 390 (423)
T KOG0313|consen 384 DIAGHND 390 (423)
T ss_pred eeccCCc
Confidence 7888864
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.33 E-value=7.6e-12 Score=150.38 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=108.5
Q ss_pred CCceEEEEECCC------------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccc
Q 002778 235 NAGIVVVKDFVT------------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 302 (882)
Q Consensus 235 ~dG~V~VWDl~s------------~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d 302 (882)
.||.++||.... .+.+.++..|.+.|+|+.|+|||++||+||+| ..|.||+-.+......-|..+..
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD-~~v~iW~~~~~~~~~~fgs~g~~ 113 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD-RLVMIWERAEIGSGTVFGSTGGA 113 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc-ceEEEeeecccCCcccccccccc
Confidence 678888998753 24567788899999999999999999999985 57999998641000000100011
Q ss_pred cCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCCCCCCcccCCC
Q 002778 303 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSS 382 (882)
Q Consensus 303 ~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~~~lpw~~~s~ 382 (882)
-.-+.+..+...|||+ ..|.+|+||||+.+||++|.|++|+||+..+++....+++|...+.| +.|+|...
T Consensus 114 ~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKG--------vs~DP~Gk 184 (942)
T KOG0973|consen 114 KNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKG--------VSWDPIGK 184 (942)
T ss_pred cccceeeEEEEEecCC-CccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccc--------eEECCccC
Confidence 1112345555668865 57999999999999999999999999999999888889999854444 57777788
Q ss_pred CcccccccC
Q 002778 383 GISEQQCVL 391 (882)
Q Consensus 383 ~~~~Q~~~~ 391 (882)
|...|.-+.
T Consensus 185 y~ASqsdDr 193 (942)
T KOG0973|consen 185 YFASQSDDR 193 (942)
T ss_pred eeeeecCCc
Confidence 877775444
No 91
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.32 E-value=3e-11 Score=141.92 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=128.4
Q ss_pred cCCeEEEEECCCCeEEEEE----EcCCcEEEEEEcC--CEEE-EEECCeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 59 SPTAVRFYSFQSHCYEHVL----RFRSSVCMVRCSP--RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tL----kf~s~V~sV~~S~--rlLA-V~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
+.++|-+|++++|-..+++ -|..+|.+|+++. ++++ .+.++-+++||..+...+.++.-....
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~---------- 537 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSI---------- 537 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCc----------
Confidence 5799999999999999998 3889999999975 3444 456778999999887766666421110
Q ss_pred cccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 132 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 132 ~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
..+.|.-. .+.
T Consensus 538 -----------~~iv~hr~---------------------------s~l------------------------------- 548 (910)
T KOG1539|consen 538 -----------TGIVYHRV---------------------------SDL------------------------------- 548 (910)
T ss_pred -----------ceeeeeeh---------------------------hhh-------------------------------
Confidence 00111100 000
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
++ .+..|-.|+|+|..+.++++.|.+|...|++++|||||++|++|+.|++ ||+||+.+
T Consensus 549 --------------~a----~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt-- 607 (910)
T KOG1539|consen 549 --------------LA----IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPT-- 607 (910)
T ss_pred --------------hh----hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccC--
Confidence 00 1234567999999999999999999999999999999999999999876 99999954
Q ss_pred ccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC-CeEEEEE
Q 002778 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFV 347 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D-GTVhIWd 347 (882)
| ..+--+. ...+..+|+|||+|.+||++..| .-|.+|.
T Consensus 608 -----~----------~lID~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 608 -----G----------TLIDGLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred -----c----------ceeeeEe---cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 3 2343332 23578999999999999999988 5699995
No 92
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.32 E-value=8.3e-11 Score=136.25 Aligned_cols=200 Identities=17% Similarity=0.233 Sum_probs=137.7
Q ss_pred CCeEEEEECCCCeEEEEEEc---CCcEEE-EEEc---C-CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 60 PTAVRFYSFQSHCYEHVLRF---RSSVCM-VRCS---P-RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf---~s~V~s-V~~S---~-rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
+++++||+-+.++++.+..| .+-|-. +++- + ++++.+.|..|.+|...+.+.+++|.+|...
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn---------- 103 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN---------- 103 (745)
T ss_pred CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc----------
Confidence 68899999988887775443 333332 4443 2 3444456889999999999999999998762
Q ss_pred cccceeeEEcC----cEEEEe-CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 132 NVGYGPMAVGP----RWLAYA-SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 132 ~~~~g~lAlsp----R~LAys-s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
.++++- ..|.-+ +.++++|..|.+.. .+.+ |
T Consensus 104 -----VC~ls~~~~~~~iSgSWD~TakvW~~~~l~~-~l~g------------------------------------H-- 139 (745)
T KOG0301|consen 104 -----VCSLSIGEDGTLISGSWDSTAKVWRIGELVY-SLQG------------------------------------H-- 139 (745)
T ss_pred -----eeeeecCCcCceEecccccceEEecchhhhc-ccCC------------------------------------c--
Confidence 233321 322211 34678886443210 0100 0
Q ss_pred ccCCCCCCCCccCCCccccccccc---cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAG---ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~---~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
.. +-|.+..++. .+|+.|.+|++|.- ++.+++|.+|++-|..|++=|++. +++++.||. |+
T Consensus 140 -------~a-----sVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir 203 (745)
T KOG0301|consen 140 -------TA-----SVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IR 203 (745)
T ss_pred -------ch-----heeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCce-EE
Confidence 00 0011111100 16788999999976 788999999999999999998865 668999885 99
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
+|++. | ..+++.. ||+ +-|++|+-.++++.|++++.|+|++||+..
T Consensus 204 ~w~~~--------g----------e~l~~~~-ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 204 LWDLD--------G----------EVLLEMH-GHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEecc--------C----------ceeeeee-ccc-eEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 99993 3 3666654 666 479999988999999999999999999986
No 93
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.8e-11 Score=136.69 Aligned_cols=179 Identities=18% Similarity=0.285 Sum_probs=130.9
Q ss_pred CCeEEEEECCCCeEEEEEEcCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
.+-|.|-..+|++.+.+++-.+.|.++.|+. .+++++.+++|++||++...+++++..... . ...
T Consensus 324 ~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~--------v----~gt 391 (514)
T KOG2055|consen 324 NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS--------V----HGT 391 (514)
T ss_pred CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc--------c----cee
Confidence 3778999999999999999999999999975 577778889999999999988888753211 0 001
Q ss_pred eeEE--cCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 137 PMAV--GPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 137 ~lAl--spR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
.+++ .++|||
T Consensus 392 s~~~S~ng~ylA-------------------------------------------------------------------- 403 (514)
T KOG2055|consen 392 SLCISLNGSYLA-------------------------------------------------------------------- 403 (514)
T ss_pred eeeecCCCceEE--------------------------------------------------------------------
Confidence 1221 112222
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCC------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-CCEEEEEec
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT------RAIISQFKAHTSPISALCFDPSGTLLVTASVY-GNNINIFRI 287 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s------~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d-Gt~IrVWdi 287 (882)
+|+..|.|.|||..+ .+++..+..-+..|+.|+|+||+.+||.||.. ...+|+-.+
T Consensus 404 -----------------~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv 466 (514)
T KOG2055|consen 404 -----------------TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV 466 (514)
T ss_pred -----------------eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec
Confidence 345678888888653 46777787788999999999999999999863 334788777
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
|++ +...+|... +..-..|+|++|||.|-+||.|..+|.||||.|..+
T Consensus 467 -PS~------TVFsNfP~~---------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 467 -PSC------TVFSNFPTS---------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred -cce------eeeccCCCC---------CCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 432 111222221 112235899999999999999999999999998753
No 94
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.31 E-value=3.3e-11 Score=133.06 Aligned_cols=251 Identities=15% Similarity=0.200 Sum_probs=150.8
Q ss_pred cCCeEEEEECCCC---eEEEEEE-cCCcEEEEEEcC--C-EEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 59 SPTAVRFYSFQSH---CYEHVLR-FRSSVCMVRCSP--R-IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 59 sp~tVrlWDlkTG---~~V~tLk-f~s~V~sV~~S~--r-lLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
++.|..+|.+..- +..+++. |..+|.-|+++| + +|+.+.++.+.+||+.|+++.+..... .
T Consensus 244 kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~------------~ 311 (519)
T KOG0293|consen 244 KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG------------L 311 (519)
T ss_pred CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC------------c
Confidence 5688999976433 3466665 888999999998 3 555667888999999999986654311 0
Q ss_pred cccceeeEEcC---cEEEEeC-CCeEeccC-CCCCCccCCC---CC-CCCCcCCCCCccEEEeeccchhhhhcccccccc
Q 002778 132 NVGYGPMAVGP---RWLAYAS-NTLLLSNS-GRLSPQNLTP---SG-VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLS 202 (882)
Q Consensus 132 ~~~~g~lAlsp---R~LAyss-~~v~lwdt-G~vs~q~lt~---~~-vs~s~SP~~GslVA~~A~essk~la~GliktLs 202 (882)
+.....+++-| ++++-++ .+...|+. |.+ ...+.+ |. .-.+-++++-.++ ....|. .+ .++....
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~--~i--~l~~~e~ 385 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVL-LVTVDK--KI--RLYNREA 385 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEE-EEeccc--ce--eeechhh
Confidence 11234566666 6665443 36788875 322 222211 10 1111223333222 221111 00 0000000
Q ss_pred ccccccCCC-CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCC--eEEEEECC-CCCEEEEEEcC
Q 002778 203 KYCQELLPD-GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSP--ISALCFDP-SGTLLVTASVY 278 (882)
Q Consensus 203 ~~~~~l~pd-gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~sp--IsaLaFSP-dGtlLATAS~d 278 (882)
+.+..+... ....+++.+.++++..+ .-.+.+|++||+...+.+..+.+|+.. |-.=||-- +.+++|+||.|
T Consensus 386 ~~dr~lise~~~its~~iS~d~k~~Lv----nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 386 RVDRGLISEEQPITSFSISKDGKLALV----NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred hhhhccccccCceeEEEEcCCCcEEEE----EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence 000001100 11122333444454322 246789999999988889999999764 44446754 44899999997
Q ss_pred CCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECCCC
Q 002778 279 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 279 Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~~~ 351 (882)
+. |.||+-.. | ..+.+| -||.. .|.+|+|+|.. ..+|++|+||||+||...+.
T Consensus 462 ~k-vyIWhr~s-------g----------kll~~L-sGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 462 SK-VYIWHRIS-------G----------KLLAVL-SGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ce-EEEEEccC-------C----------ceeEee-cCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 64 99999864 3 466666 47764 69999999965 67999999999999988653
No 95
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.30 E-value=2.5e-10 Score=124.79 Aligned_cols=164 Identities=18% Similarity=0.129 Sum_probs=125.7
Q ss_pred EEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEe
Q 002778 73 YEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYA 148 (882)
Q Consensus 73 ~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAys 148 (882)
-+.+|. |...|++|+++| .++|+|. |+..+||++.+++.+..+.+|... ... +.|+
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDS-------------Vt~-------~~Fs 115 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDS-------------VTC-------CSFS 115 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCc-------------eEE-------EEEc
Confidence 345554 899999999997 5666654 678999999999988888777651 112 2222
Q ss_pred CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccc
Q 002778 149 SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH 228 (882)
Q Consensus 149 s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~l 228 (882)
.+ |. +++
T Consensus 116 hd----------------------------gt--------------------------------------------lLA- 122 (399)
T KOG0296|consen 116 HD----------------------------GT--------------------------------------------LLA- 122 (399)
T ss_pred cC----------------------------ce--------------------------------------------EEE-
Confidence 21 11 111
Q ss_pred cccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCccc
Q 002778 229 AGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 308 (882)
Q Consensus 229 a~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~ 308 (882)
+|+.+|.|+||+..++.....|..--..|.-|.|+|-+..|+.++.||. +-.|.+.. +
T Consensus 123 ---TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGs-vWmw~ip~-------~----------- 180 (399)
T KOG0296|consen 123 ---TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGS-VWMWQIPS-------Q----------- 180 (399)
T ss_pred ---ecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCc-EEEEECCC-------c-----------
Confidence 5678899999999999988888766678999999999999999999886 88999932 1
Q ss_pred EEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 309 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
.+.++.-|+ ++++.+=.|.|||+.++++..||||++|+..+..
T Consensus 181 ~~~kv~~Gh-~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 181 ALCKVMSGH-NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred ceeeEecCC-CCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence 233344574 4689999999999999999999999999998753
No 96
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.30 E-value=2e-11 Score=136.79 Aligned_cols=233 Identities=14% Similarity=0.168 Sum_probs=151.1
Q ss_pred cccccccccCccCCCCCccc--ccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC---CEEEE-EECCeEEEEECCCCce
Q 002778 38 RSHLGGVRDGMMDSQSGNCV--NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAV-GLATQIYCFDALTLEN 111 (882)
Q Consensus 38 ~~~~~~v~~~~~~~~~~~~~--~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~---rlLAV-~~d~qI~IWDa~T~e~ 111 (882)
.||+-+|++...+..--+.+ ..++.|++||++||+++..+.....++.|.|.+ +++++ +++++|..||+++++.
T Consensus 255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence 57777887766654322222 467999999999999999999888899999986 44555 5688999999999997
Q ss_pred eEEEecCCCcccCCCCcccccccceeeEE---cCcEEEEeCC-CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeec
Q 002778 112 KFSVLTYPVPQLAGQGAVGINVGYGPMAV---GPRWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 187 (882)
Q Consensus 112 l~tL~t~p~p~~~~~~~~g~~~~~g~lAl---spR~LAyss~-~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~ 187 (882)
++....|-.+ +..+.| +.|+|..+++ ++++|.-+.-.+- ..++..++
T Consensus 335 vqeYd~hLg~-------------i~~i~F~~~g~rFissSDdks~riWe~~~~v~i----------------k~i~~~~~ 385 (503)
T KOG0282|consen 335 VQEYDRHLGA-------------ILDITFVDEGRRFISSSDDKSVRIWENRIPVPI----------------KNIADPEM 385 (503)
T ss_pred HHHHHhhhhh-------------eeeeEEccCCceEeeeccCccEEEEEcCCCccc----------------hhhcchhh
Confidence 6655433221 123333 3366666554 6889974321000 01110000
Q ss_pred cchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC---cEEEEeccCCCC--eEE
Q 002778 188 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---AIISQFKAHTSP--ISA 262 (882)
Q Consensus 188 essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~---~~v~~f~aH~sp--Isa 262 (882)
.+.-|-. ..++ .++.+ ..+.+..|.|+.+... .....|++|..+ -..
T Consensus 386 -------------hsmP~~~---------~~P~--~~~~~----aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 386 -------------HTMPCLT---------LHPN--GKWFA----AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred -------------ccCccee---------cCCC--CCeeh----hhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 0111111 1122 12211 2356777888876543 234678888654 445
Q ss_pred EEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCC
Q 002778 263 LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKG 341 (882)
Q Consensus 263 LaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DG 341 (882)
+.|||||.+|++|+.+|. +.+||.++. +.+.++. .+ ...+..+.|.|-. ..||+++-+|
T Consensus 438 v~fSpDG~~l~SGdsdG~-v~~wdwkt~-----------------kl~~~lk-ah-~~~ci~v~wHP~e~Skvat~~w~G 497 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGK-VNFWDWKTT-----------------KLVSKLK-AH-DQPCIGVDWHPVEPSKVATCGWDG 497 (503)
T ss_pred EEEcCCCCeEEeecCCcc-EEEeechhh-----------------hhhhccc-cC-CcceEEEEecCCCcceeEecccCc
Confidence 899999999999999886 899999752 2344443 33 3578899999975 5789999999
Q ss_pred eEEEEE
Q 002778 342 TCHVFV 347 (882)
Q Consensus 342 TVhIWd 347 (882)
-|+||+
T Consensus 498 ~Ikiwd 503 (503)
T KOG0282|consen 498 LIKIWD 503 (503)
T ss_pred eeEecC
Confidence 999996
No 97
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.30 E-value=6e-11 Score=129.96 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=81.7
Q ss_pred ccCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCccc
Q 002778 232 DMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 308 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~---~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~ 308 (882)
+++.||.|+|||++++ .++. .++|.+.|+.|.|+..-.+||+|+.+|+ ++|||++... ++ .
T Consensus 275 ScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~----~~----------~ 338 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFK----SG----------Q 338 (440)
T ss_pred eeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCce-EEEEEhhhcc----CC----------C
Confidence 4678999999999988 3333 4899999999999999999999999886 9999997421 11 2
Q ss_pred EEEEEEecccCCcEEEEEEccC-CCEEEEEeCCCeEEEEECCCCC
Q 002778 309 HLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPD-g~~LAsgS~DGTVhIWdI~~~g 352 (882)
.+..+.+ +.++|++|.|+|. ...||+++.|..|.||||....
T Consensus 339 pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 339 PVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred cceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 4444443 3468999999985 4678889999999999997543
No 98
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.29 E-value=3.4e-11 Score=129.92 Aligned_cols=119 Identities=19% Similarity=0.201 Sum_probs=92.7
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe-
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR- 315 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R- 315 (882)
..+-||.-..+..+..+-+|.+.|+-|+|.++|+.|.+++.++..|-.||+... + ..+|+|.|
T Consensus 230 q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~------~----------~pv~~L~rh 293 (406)
T KOG2919|consen 230 QRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS------R----------DPVYALERH 293 (406)
T ss_pred ceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc------c----------chhhhhhhh
Confidence 445566666678888889999999999999999999999988888999999642 2 46777765
Q ss_pred -cccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc-ccccccCCCCCCcccCC
Q 002778 316 -GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 316 -G~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~-~l~~H~~~~~~~~~sp~ 372 (882)
+.|+.+|+ ...-|+|+|||+|+.||.|++||+...|..+ .+..|.-.+.+..+.|+
T Consensus 294 v~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 294 VGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred ccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc
Confidence 43455665 5567999999999999999999999988754 34555555666666665
No 99
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=4.8e-12 Score=146.72 Aligned_cols=164 Identities=14% Similarity=0.238 Sum_probs=126.8
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+++|||||+..++.+++|. |...+.+|.|+| .+.|.+ .+..+++||.+...|.++...|+- .
T Consensus 90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~-------------v 156 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR-------------V 156 (825)
T ss_pred cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc-------------e
Confidence 56899999999999999997 888999999998 455655 467899999998888888766433 1
Q ss_pred ceeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 135 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 135 ~g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
...+.|.| ||+|
T Consensus 157 v~~l~lsP~Gr~v~------------------------------------------------------------------ 170 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVA------------------------------------------------------------------ 170 (825)
T ss_pred eEEEeecCCCceee------------------------------------------------------------------
Confidence 23344433 3332
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 292 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~ 292 (882)
++..|.+|+|||+..|+.+..|..|...|.++.|+|..-+|+++|.|++ +++||+++.
T Consensus 171 -------------------~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletf-- 228 (825)
T KOG0267|consen 171 -------------------SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETF-- 228 (825)
T ss_pred -------------------ccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeecccee--
Confidence 2344789999999999999999999999999999999999999999775 999999642
Q ss_pred cCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC
Q 002778 293 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 340 (882)
Q Consensus 293 ~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D 340 (882)
.+.. ..+.....|.+++|+||++.+++|-..
T Consensus 229 ----------------e~I~-s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 229 ----------------EVIS-SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ----------------EEee-ccCCccCCceeeeecCCceeeecCchh
Confidence 1111 111122479999999999999887544
No 100
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=6.8e-11 Score=127.36 Aligned_cols=106 Identities=13% Similarity=0.249 Sum_probs=85.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|.+|.|||+. |+.+.++......-...+.||+|++||+++-.- .++||.+-- .+.|+ -++..+++
T Consensus 204 sas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTp-DVkVwE~~f--~kdG~-------fqev~rvf 272 (420)
T KOG2096|consen 204 SASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-DVKVWEPIF--TKDGT-------FQEVKRVF 272 (420)
T ss_pred EecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCC-CceEEEEEe--ccCcc-------hhhhhhhh
Confidence 56788999999998 899999988888888889999999999998743 489999742 23321 12335667
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
.|. ||.. -|..+|||++++.+++.|.||+.+|||++-
T Consensus 273 ~Lk-GH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 273 SLK-GHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eec-cchh-heeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 774 7664 599999999999999999999999999863
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.27 E-value=4.3e-11 Score=128.59 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=85.6
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++-|.+..+||++++.++..|.+|...++..+-.|.-++++|+|. ++++|+||..+. ...+.
T Consensus 289 TaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-DtTFRLWDFRea----------------I~sV~ 351 (481)
T KOG0300|consen 289 TASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-DTTFRLWDFREA----------------IQSVA 351 (481)
T ss_pred eeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc-CceeEeccchhh----------------cceee
Confidence 5678999999999999999999999999999999999999999998 567999999752 12334
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
.| .|++. .|+++.|.-|. .+++||+|.||+|||+.....
T Consensus 352 VF-QGHtd-tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 352 VF-QGHTD-TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred ee-ccccc-ceeEEEEecCC-ceeecCCCceEEEeeeccccC
Confidence 44 47764 69999999886 577999999999999986543
No 102
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.27 E-value=3.3e-11 Score=135.15 Aligned_cols=120 Identities=22% Similarity=0.315 Sum_probs=93.7
Q ss_pred ccCCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 309 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f-~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~ 309 (882)
+++.+|.|.|||+.....+..+ .+|..|...|||+|.. .+|||-+.| ..|++||+... +.
T Consensus 182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D-kki~~yD~~s~-----------------~s 243 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD-KKINIYDIRSQ-----------------AS 243 (673)
T ss_pred eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc-ceEEEeecccc-----------------cc
Confidence 4678999999999988777554 6899999999999976 467888885 56999999521 11
Q ss_pred EEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccc-cccccCCCCCCcccCC
Q 002778 310 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-FQTLSSQGGDPYLFPV 372 (882)
Q Consensus 310 l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~-l~~H~~~~~~~~~sp~ 372 (882)
...|- ..++...|+|+++|.+||+|+.+|.+.-||+...+.+++ +..|..+|.+..++|.
T Consensus 244 ~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 244 TDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 11111 124689999999999999999999999999998887775 4688877777666654
No 103
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.26 E-value=1.1e-10 Score=125.50 Aligned_cols=118 Identities=15% Similarity=0.149 Sum_probs=94.2
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc
Q 002778 216 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 292 (882)
Q Consensus 216 ~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f---~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~ 292 (882)
++|+-|++..+.+ |-.--++++||+.+-++...- ..|++.|+++.+|+.|++.+|||.||. |+|||--.
T Consensus 221 siSfHPsGefllv----gTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS--- 292 (430)
T KOG0640|consen 221 SISFHPSGEFLLV----GTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVS--- 292 (430)
T ss_pred eEeecCCCceEEE----ecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeecccc---
Confidence 3455555555432 234468999999998775433 369999999999999999999999887 99999532
Q ss_pred cCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 293 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 293 ~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
+ +++..+.+.|..+.|.+..|..+|+||.+++.|.+|+||.|.+.....
T Consensus 293 ----~----------rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 293 ----N----------RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred ----H----------HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 2 567777777777899999999999999999999999999998765443
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.8e-10 Score=136.71 Aligned_cols=216 Identities=17% Similarity=0.206 Sum_probs=141.4
Q ss_pred cCCeEEEEECCCC-eEEEEEE-cCCcEEEEEEcCCEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 59 SPTAVRFYSFQSH-CYEHVLR-FRSSVCMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 59 sp~tVrlWDlkTG-~~V~tLk-f~s~V~sV~~S~rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
+++.||+|+..+- +...++. +...|.++++....++++ .++.|++|....++.--.|.-...| .
T Consensus 33 sdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp-------------~ 99 (933)
T KOG1274|consen 33 SDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLP-------------I 99 (933)
T ss_pred CCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeecc-------------c
Confidence 6788999987765 5666666 778899999987666655 4678999998877642222111122 2
Q ss_pred eeeEEcC--cEEEEeCCC--eEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 136 GPMAVGP--RWLAYASNT--LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 136 g~lAlsp--R~LAyss~~--v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
..++++. .|+|.+++. +++-+. .|.+.+ +++.++ +
T Consensus 100 r~~~v~g~g~~iaagsdD~~vK~~~~-----------------------------~D~s~~------~~lrgh------~ 138 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDDTAVKLLNL-----------------------------DDSSQE------KVLRGH------D 138 (933)
T ss_pred eEEEEecCCcEEEeecCceeEEEEec-----------------------------cccchh------eeeccc------C
Confidence 3455543 577776642 333221 000000 111111 1
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc-------C-CCCeEEEEECCCCCEEEEEEcCCCEEE
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-------H-TSPISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~a-------H-~spIsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
+....+++++.+..+++ ...||.|+|||+.++.+..++.. - ...+.-++|+|+|..||....|+ .|+
T Consensus 139 apVl~l~~~p~~~fLAv----ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vk 213 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAV----SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVK 213 (933)
T ss_pred CceeeeeEcCCCCEEEE----EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC-eEE
Confidence 22233455555566553 46799999999999876655542 1 44677899999966666666655 489
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
+|+... + .+.++|+--+..+.+.+++|||+|+|||+++.||-|-|||+++
T Consensus 214 vy~r~~-------w----------e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 214 VYSRKG-------W----------ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEccCC-------c----------eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999863 2 3667775444444699999999999999999999999999984
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.23 E-value=1.7e-10 Score=123.39 Aligned_cols=110 Identities=16% Similarity=0.246 Sum_probs=82.7
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEecCCCcccCCCCCC-ccccCCcccEEEE
Q 002778 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNH-KYDWNSSHVHLYK 312 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVWdi~p~~~~~~sG~~-~~d~sss~~~l~~ 312 (882)
.+-.|++-|+.+|..-.+|.+|++.|.++.|+|... .|||||.||. ||+||+... +|.. -.|.... +....
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra-----sgcf~~lD~hn~-k~~p~ 238 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA-----SGCFRVLDQHNT-KRPPI 238 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecc-----cceeEEeecccC-ccCcc
Confidence 455799999999999999999999999999999876 6799999886 999999742 1210 0111010 11111
Q ss_pred EE-ecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 313 LH-RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 313 L~-RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+. +-.+...|..+||+.|+++|++.+.|..+++|+...+
T Consensus 239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 22 2234458999999999999999999999999998753
No 106
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=9.8e-10 Score=118.51 Aligned_cols=220 Identities=15% Similarity=0.179 Sum_probs=144.7
Q ss_pred CcccccCC----eEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCcccCC
Q 002778 54 GNCVNSPT----AVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAG 125 (882)
Q Consensus 54 ~~~~~sp~----tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~ 125 (882)
..++.+.+ +||.-++.+.++++.+. |...|.+++.+| ..|.++.|++|++||+++.++...+.....
T Consensus 69 ~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----- 143 (311)
T KOG1446|consen 69 NTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----- 143 (311)
T ss_pred ceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-----
Confidence 34555554 99999999999999998 999999999998 356667899999999998887666643222
Q ss_pred CCcccccccceeeEEcCcEEEEe--C--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccc
Q 002778 126 QGAVGINVGYGPMAVGPRWLAYA--S--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTL 201 (882)
Q Consensus 126 ~~~~g~~~~~g~lAlspR~LAys--s--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktL 201 (882)
...|+.|.=|.++ . +.++|.|.-.. +.| ...++
T Consensus 144 ----------pi~AfDp~GLifA~~~~~~~IkLyD~Rs~----------------dkg-----------------PF~tf 180 (311)
T KOG1446|consen 144 ----------PIAAFDPEGLIFALANGSELIKLYDLRSF----------------DKG-----------------PFTTF 180 (311)
T ss_pred ----------cceeECCCCcEEEEecCCCeEEEEEeccc----------------CCC-----------------CceeE
Confidence 2456666333222 2 23444442000 000 00000
Q ss_pred cccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCe---EEEEECCCCCEEEEEEcC
Q 002778 202 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI---SALCFDPSGTLLVTASVY 278 (882)
Q Consensus 202 s~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spI---saLaFSPdGtlLATAS~d 278 (882)
.=... .......+.++++++.+.+. ...+.+.|.|.-+|..+.+|..|...- ...+|.|||+++.+++.|
T Consensus 181 ~i~~~---~~~ew~~l~FS~dGK~iLls----T~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d 253 (311)
T KOG1446|consen 181 SITDN---DEAEWTDLEFSPDGKSILLS----TNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD 253 (311)
T ss_pred ccCCC---CccceeeeEEcCCCCEEEEE----eCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC
Confidence 00000 00001223455667776543 467889999999999999998876543 456899999999999998
Q ss_pred CCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 279 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 279 Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
|+ |.||++++ | .++..+ +|.....+.++.|+|--..+|++ +..+-+|-..
T Consensus 254 g~-i~vw~~~t-------g----------~~v~~~-~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 254 GT-IHVWNLET-------G----------KKVAVL-RGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred Cc-EEEEEcCC-------C----------cEeeEe-cCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 87 89999965 4 466666 46545678999999965555555 5557777554
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.22 E-value=1.3e-10 Score=129.81 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=132.4
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
++.|.|||..|++.+++++ |++.|.+++|.. ++.+.+.|..|++|++..+..+.++.+|+.-
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~-------------- 288 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG-------------- 288 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc--------------
Confidence 4789999999999999987 899999999964 6777888999999999988888888777651
Q ss_pred eeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCC
Q 002778 136 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 215 (882)
Q Consensus 136 g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s 215 (882)
.++++ .|+ ++ .|
T Consensus 289 -v~~Id--aL~----------------------------------------re---------------R~---------- 300 (479)
T KOG0299|consen 289 -VLGID--ALS----------------------------------------RE---------------RC---------- 300 (479)
T ss_pred -eeeec--hhc----------------------------------------cc---------------ce----------
Confidence 11110 000 00 00
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCC
Q 002778 216 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 295 (882)
Q Consensus 216 ~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~ 295 (882)
+ ..|+.|.+++||++.. ...-.|++|.+.|-|++|=.+ ..++|+|.+|. |-+|++..-
T Consensus 301 ------------v--tVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KK----- 358 (479)
T KOG0299|consen 301 ------------V--TVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKK----- 358 (479)
T ss_pred ------------E--EeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeeccc-----
Confidence 0 0245799999999954 455688999999999999766 68999999885 999998531
Q ss_pred CCCCccccCCcccEEEE--EEecccC--------CcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 296 SGNHKYDWNSSHVHLYK--LHRGITS--------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 296 sG~~~~d~sss~~~l~~--L~RG~t~--------a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+.++. +..|..+ ..|++|+-.|.+..+|+||.+|.|+||.+++.
T Consensus 359 ------------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 359 ------------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ------------CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 12222 1112211 27999999999999999999999999999864
No 108
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=3.9e-10 Score=118.82 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=87.0
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
+-||+|+|||..-++.+.+|++|..-|...+|+| .+.++|++|.||+ +++||++.. | +.+.
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~-l~lwdvr~~------g----------k~~~- 185 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT-LRLWDVRSP------G----------KFMS- 185 (311)
T ss_pred ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce-EEEEEecCC------C----------ceeE-
Confidence 5699999999999999999999999999999999 5789999999886 899999631 3 2332
Q ss_pred EEecccCCcEEEEEEccC-CCEEEEEeCCCeEEEEECCCCCCcc-cccccc
Q 002778 313 LHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLS 361 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPD-g~~LAsgS~DGTVhIWdI~~~gg~~-~l~~H~ 361 (882)
+. .++..|.+..||.- ...||+|+.|++|++|||.....+. .+.+|.
T Consensus 186 i~--ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~ 234 (311)
T KOG0277|consen 186 IE--AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG 234 (311)
T ss_pred EE--eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc
Confidence 32 23468999999974 5678899999999999998766544 345554
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=1.9e-10 Score=123.61 Aligned_cols=247 Identities=19% Similarity=0.202 Sum_probs=152.6
Q ss_pred cccccCceEEEEecCCCC------CCCCCcccccccccccCcc----CCCCCcccccCCeEEEEECCCCeEEEEEEcCCc
Q 002778 13 GFRKLHPFLLVVAGEDTN------TLAPGQNRSHLGGVRDGMM----DSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSS 82 (882)
Q Consensus 13 ~f~~~~pll~vv~~d~~~------~~~~~~~~~~~~~v~~~~~----~~~~~~~~~sp~tVrlWDlkTG~~V~tLkf~s~ 82 (882)
+|-.+--+|||-+=|++- +..+.+.+-+..++-+--. ....|+ .++.||.+|+.+++......|..+
T Consensus 20 ~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~---~dg~vr~~Dln~~~~~~igth~~~ 96 (323)
T KOG1036|consen 20 KFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGG---LDGQVRRYDLNTGNEDQIGTHDEG 96 (323)
T ss_pred EEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEec---cCceEEEEEecCCcceeeccCCCc
Confidence 577677777776655541 1122333334444422111 111232 689999999999998877779999
Q ss_pred EEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC-cEEE-EeCCCeEeccC
Q 002778 83 VCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLA-YASNTLLLSNS 157 (882)
Q Consensus 83 V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp-R~LA-yss~~v~lwdt 157 (882)
|+.|.... .+|+.+.|++|++||.+......++.. +. ....|.++. ++|. ..+..+.+|+.
T Consensus 97 i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~k-------------kVy~~~v~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 97 IRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GK-------------KVYCMDVSGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred eEEEEeeccCCeEEEcccCccEEEEecccccccccccc-Cc-------------eEEEEeccCCEEEEeecCceEEEEEc
Confidence 99999884 566667899999999987333333321 11 134555555 4444 55667888874
Q ss_pred CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCc
Q 002778 158 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG 237 (882)
Q Consensus 158 G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG 237 (882)
-.+ ..+.. .++++-.+ .-.|-.+.|.+. + ++ .++.+|
T Consensus 163 Rn~-----~~~~q---------------~reS~lky--------qtR~v~~~pn~e---------G----y~--~sSieG 199 (323)
T KOG1036|consen 163 RNL-----DEPFQ---------------RRESSLKY--------QTRCVALVPNGE---------G----YV--VSSIEG 199 (323)
T ss_pred ccc-----cchhh---------------hcccccee--------EEEEEEEecCCC---------c----eE--EEeecc
Confidence 211 00000 00000000 001112223111 1 11 246789
Q ss_pred eEEEEECCCC----cEEEEeccCCC---------CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccC
Q 002778 238 IVVVKDFVTR----AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 304 (882)
Q Consensus 238 ~V~VWDl~s~----~~v~~f~aH~s---------pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~s 304 (882)
.|-|=.+... +..-.|++|.. ||++|+|+|--..||||+.|| .|++||..+
T Consensus 200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG-~V~~Wd~~~--------------- 263 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG-IVNIWDLFN--------------- 263 (323)
T ss_pred eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc-eEEEccCcc---------------
Confidence 9988777654 34567888864 899999999988999999988 589999854
Q ss_pred CcccEEEEEEecccCCcEEEEEEccCCCEEEEEeC
Q 002778 305 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 339 (882)
Q Consensus 305 ss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~ 339 (882)
.+.++.|.+- ...|-+|+||.||..||++++
T Consensus 264 --rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 264 --RKRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred --hhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 2567777542 235999999999999999975
No 110
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.19 E-value=2.1e-11 Score=136.15 Aligned_cols=208 Identities=15% Similarity=0.194 Sum_probs=140.3
Q ss_pred CCeEEEEECCCCeEEEEEEcCCcEEEEEE--cCCEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCccccccccee
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRC--SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 137 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~V~sV~~--S~rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~ 137 (882)
.+.|--+|..|++..+.+.-...|++|.| +.+++||++..-++||| ..|..+++|..+.. ...
T Consensus 150 KGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtElHClk~~~~--------------v~r 214 (545)
T KOG1272|consen 150 KGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTELHCLKRHIR--------------VAR 214 (545)
T ss_pred ccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcEEeehhhcCc--------------hhh
Confidence 46788899999999999999999999998 46899999999999999 45677888876432 122
Q ss_pred eEEcC-c-EEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCC
Q 002778 138 MAVGP-R-WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 215 (882)
Q Consensus 138 lAlsp-R-~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s 215 (882)
+.|=| . +||.++. +|-+..|.++ .|.+||.+.. ..|..-
T Consensus 215 LeFLPyHfLL~~~~~------~G~L~Y~DVS-----------~GklVa~~~t----------------------~~G~~~ 255 (545)
T KOG1272|consen 215 LEFLPYHFLLVAASE------AGFLKYQDVS-----------TGKLVASIRT----------------------GAGRTD 255 (545)
T ss_pred hcccchhheeeeccc------CCceEEEeec-----------hhhhhHHHHc----------------------cCCccc
Confidence 33323 1 2222221 1222112111 1333321111 011122
Q ss_pred CccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCC
Q 002778 216 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 295 (882)
Q Consensus 216 ~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~ 295 (882)
....||-..++. .|+..|+|.+|...+...+..+.+|.++|++||++++|+++||++.| +.++|||+...
T Consensus 256 vm~qNP~NaVih----~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D-r~~kIWDlR~~----- 325 (545)
T KOG1272|consen 256 VMKQNPYNAVIH----LGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD-RKVKIWDLRNF----- 325 (545)
T ss_pred hhhcCCccceEE----EcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc-cceeEeeeccc-----
Confidence 344555555443 57889999999999999999999999999999999999999999995 56999999642
Q ss_pred CCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 296 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 296 sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
.++..++ ++-....++||.-| .| +.|.-..|+||.=
T Consensus 326 ------------~ql~t~~---tp~~a~~ls~Sqkg-lL-A~~~G~~v~iw~d 361 (545)
T KOG1272|consen 326 ------------YQLHTYR---TPHPASNLSLSQKG-LL-ALSYGDHVQIWKD 361 (545)
T ss_pred ------------cccceee---cCCCcccccccccc-ce-eeecCCeeeeehh
Confidence 2444443 23346789999766 33 3344446999963
No 111
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.17 E-value=9.9e-10 Score=118.52 Aligned_cols=209 Identities=14% Similarity=0.129 Sum_probs=136.8
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC-----CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP-----RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~-----rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
++.+|+|||+++...+..|- |.+.|.++.|.+ .+|+.+.|+.|.+||+...+++.++..|..-
T Consensus 61 sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~----------- 129 (362)
T KOG0294|consen 61 SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ----------- 129 (362)
T ss_pred CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc-----------
Confidence 57999999999999998876 788999999975 3455566789999999999999999877651
Q ss_pred ccceeeEEcC-cEEEEe---CCCeEeccC--CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 133 VGYGPMAVGP-RWLAYA---SNTLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 133 ~~~g~lAlsp-R~LAys---s~~v~lwdt--G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
.+-+++.| .-||.+ +..+.+||. |+... + ..|..+
T Consensus 130 --Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~-------------------v----------------~~L~~~-- 170 (362)
T KOG0294|consen 130 --VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF-------------------V----------------LNLKNK-- 170 (362)
T ss_pred --cceeEecCCCceEEEEcCCceeeeehhhcCccce-------------------e----------------eccCCc--
Confidence 24566766 344433 346788984 43210 0 000000
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 286 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWd 286 (882)
...+.+++.+ ....+ .....|-||.+.+-++...+.-. ..+.++.|... ..|++|..++ .|++||
T Consensus 171 -----at~v~w~~~G--d~F~v-----~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~-~~L~vG~d~~-~i~~~D 235 (362)
T KOG0294|consen 171 -----ATLVSWSPQG--DHFVV-----SGRNKIDIYQLDNASVFREIENP-KRILCATFLDG-SELLVGGDNE-WISLKD 235 (362)
T ss_pred -----ceeeEEcCCC--CEEEE-----EeccEEEEEecccHhHhhhhhcc-ccceeeeecCC-ceEEEecCCc-eEEEec
Confidence 0011122111 11111 12346888888776554443322 44667777655 4666777755 599999
Q ss_pred cCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEE--ccCCCEEEEEeCCCeEEEEECCCC
Q 002778 287 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 287 i~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaF--SPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
... + ..+..+. +|. ++|.+|.| .|++.+|+++|+||.|+|||++..
T Consensus 236 ~ds-------~----------~~~~~~~-AH~-~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 236 TDS-------D----------TPLTEFL-AHE-NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCC-------C----------ccceeee-cch-hheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 853 2 2445543 444 68999985 578999999999999999999865
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=6.4e-10 Score=124.56 Aligned_cols=243 Identities=12% Similarity=0.086 Sum_probs=147.8
Q ss_pred CCeEEEEECCCCeEEE-EEEcCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 60 PTAVRFYSFQSHCYEH-VLRFRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~-tLkf~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
...|.+|.+.....+. .+..++.|.+++.++ .+|+.+ -.++||||.+.||+++..+..|-.+ .
T Consensus 60 rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~-------------I 126 (476)
T KOG0646|consen 60 RPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS-------------I 126 (476)
T ss_pred CccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccc-------------e
Confidence 3578899987665555 334789999999876 566665 5789999999999998888654331 1
Q ss_pred eeeEEcC--cEEEEeCC--CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCC
Q 002778 136 GPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 211 (882)
Q Consensus 136 g~lAlsp--R~LAyss~--~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pd 211 (882)
..+-|+. .++..+++ .+++|..-.+- ++++...++ ....|+.|...+. +
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv-------------~a~~~~~~~-------------p~~~f~~HtlsIT-D 179 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLV-------------SADNDHSVK-------------PLHIFSDHTLSIT-D 179 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEEEeec-------------ccccCCCcc-------------ceeeeccCcceeE-E
Confidence 3344432 44544443 47777642220 000000000 0001111110000 0
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
.-+.+.+.... + .+++.|.++++||+..+..+.++. -..+|.|++.+|-++.+..|+.+|. |.+.++....
T Consensus 180 ---l~ig~Gg~~~r--l--~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~ 250 (476)
T KOG0646|consen 180 ---LQIGSGGTNAR--L--YTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLS 250 (476)
T ss_pred ---EEecCCCccce--E--EEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcce-EEeeehhcCC
Confidence 00000000011 1 167899999999999998887765 4578999999999999999999885 6676664211
Q ss_pred ccCCCCCCccccCC-----cccEEEEEEecccC-CcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccc
Q 002778 292 MRSGSGNHKYDWNS-----SHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 292 ~~~~sG~~~~d~ss-----s~~~l~~L~RG~t~-a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~ 358 (882)
|. +.+... .......+ -|+.+ ..|++|+.|-||..|++|+.||+|.|||+....+..++.
T Consensus 251 -----~~-~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 251 -----GQ-SAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred -----cc-cccccccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 10 000000 11222333 25554 479999999999999999999999999998766655554
No 113
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.15 E-value=3.7e-10 Score=130.84 Aligned_cols=218 Identities=16% Similarity=0.220 Sum_probs=143.0
Q ss_pred CeEEEEECCCCeEEEEEE-cCCcEEEEEEcC-----CEEEEEEC-CeEEEEECCC-CceeEEEecCCCcccCCCCccccc
Q 002778 61 TAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP-----RIVAVGLA-TQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~-----rlLAV~~d-~qI~IWDa~T-~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
+++|||||..-++...++ |.+.|..+.++. ++||.+.. .-|+|||+.. -.++.+|.+|...
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss----------- 549 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS----------- 549 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc-----------
Confidence 789999999988888887 899999999974 68888774 4599999864 3456777776551
Q ss_pred ccceeeEE--c---CcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccc
Q 002778 133 VGYGPMAV--G---PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 207 (882)
Q Consensus 133 ~~~g~lAl--s---pR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~ 207 (882)
+..+.| + -+.|....++.+...+- | . .++|.+. ..+ -.++.+..
T Consensus 550 --ITsvKFa~~gln~~MiscGADksimFr~~----q------k-----~~~g~~f-----------~r~-t~t~~ktT-- 598 (1080)
T KOG1408|consen 550 --ITSVKFACNGLNRKMISCGADKSIMFRVN----Q------K-----ASSGRLF-----------PRH-TQTLSKTT-- 598 (1080)
T ss_pred --eeEEEEeecCCceEEEeccCchhhheehh----c------c-----ccCceec-----------ccc-ccccccce--
Confidence 122222 0 02222222211111100 0 0 0001000 000 00110000
Q ss_pred cCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc---CCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 002778 208 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---HTSPISALCFDPSGTLLVTASVYGNNINI 284 (882)
Q Consensus 208 l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~a---H~spIsaLaFSPdGtlLATAS~dGt~IrV 284 (882)
-.-...++.|+..+ ++.+|..|+|||+.+++.++.|++ |.+..-.+..+|+|-+|||...|. ++-+
T Consensus 599 ------lYDm~Vdp~~k~v~----t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk-tl~~ 667 (1080)
T KOG1408|consen 599 ------LYDMAVDPTSKLVV----TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK-TLCF 667 (1080)
T ss_pred ------EEEeeeCCCcceEE----EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC-ceEE
Confidence 00112334456544 568999999999999999999985 667788899999999999988755 5899
Q ss_pred EecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 285 Wdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
||... | .++.+. .||. ..|+.+.|++|.+.|.+.+.||.|.||.+..
T Consensus 668 ~Df~s-------g----------EcvA~m-~GHs-E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 668 VDFVS-------G----------ECVAQM-TGHS-EAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEecc-------c----------hhhhhh-cCcc-hheeeeeecccchhheeecCCceEEEEECch
Confidence 99853 3 244443 3655 4699999999999999999999999999965
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.15 E-value=3.2e-10 Score=127.45 Aligned_cols=223 Identities=20% Similarity=0.225 Sum_probs=138.6
Q ss_pred EEEEEEcCCcEEEEEEcC--CEEEEEECCeEEEEECCCCcee---EEEecCCCcccCCCCcccccccceeeEEcC--cEE
Q 002778 73 YEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENK---FSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWL 145 (882)
Q Consensus 73 ~V~tLkf~s~V~sV~~S~--rlLAV~~d~qI~IWDa~T~e~l---~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~L 145 (882)
.+++|.|...|+++.++. +.|.+|..+.|+|||+..-... ..|.. -++ .| -...+.+.| |.|
T Consensus 412 q~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdc-l~r---------dn-yiRSckL~pdgrtL 480 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDC-LNR---------DN-YIRSCKLLPDGRTL 480 (705)
T ss_pred hhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccc-cCc---------cc-ceeeeEecCCCceE
Confidence 456777889999999986 7888898899999999754321 11111 000 01 124455554 666
Q ss_pred EEeC--CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCcc
Q 002778 146 AYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVW 223 (882)
Q Consensus 146 Ayss--~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~ 223 (882)
...+ .++-|||...-++ ++.+ .|+.. .-.-.++..+++.
T Consensus 481 ivGGeastlsiWDLAapTp-----------------------------rika----eltss------apaCyALa~spDa 521 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP-----------------------------RIKA----ELTSS------APACYALAISPDA 521 (705)
T ss_pred EeccccceeeeeeccCCCc-----------------------------chhh----hcCCc------chhhhhhhcCCcc
Confidence 5554 3677887421000 0000 00000 0000111222233
Q ss_pred ccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc----------c
Q 002778 224 KVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM----------R 293 (882)
Q Consensus 224 k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~----------~ 293 (882)
++. + ....||.|.|||+.+...+.+|++|++.+.||.+++||+.|=|++-|. ++|-||+..... -
T Consensus 522 kvc-F---sccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn-tvRcWDlregrqlqqhdF~SQIf 596 (705)
T KOG0639|consen 522 KVC-F---SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN-TVRCWDLREGRQLQQHDFSSQIF 596 (705)
T ss_pred cee-e---eeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc-ceeehhhhhhhhhhhhhhhhhhe
Confidence 321 1 245689999999999999999999999999999999999999999965 599999865210 0
Q ss_pred CCCCCCccccCC-------------cccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 294 SGSGNHKYDWNS-------------SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 294 ~~sG~~~~d~ss-------------s~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
+..-....||-. +....|.| +.+...|.+|.|++.|+|+++.+.|+-+..|.. ++|.
T Consensus 597 SLg~cP~~dWlavGMens~vevlh~skp~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrt-PyGa 666 (705)
T KOG0639|consen 597 SLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT-PYGA 666 (705)
T ss_pred ecccCCCccceeeecccCcEEEEecCCccceee--cccccEEEEEEecccCceeeecCchhhhhhccC-cccc
Confidence 000011234421 11222333 334567999999999999999999999999986 4553
No 115
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=1.2e-09 Score=129.14 Aligned_cols=176 Identities=18% Similarity=0.163 Sum_probs=118.4
Q ss_pred ccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC---CEEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~---rlLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
..++|||||++...+++++|.|.+-|++|+|+| ++++. ++|++|+||++..-+...--..+..
T Consensus 387 SMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~l------------- 453 (712)
T KOG0283|consen 387 SMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDL------------- 453 (712)
T ss_pred cccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhh-------------
Confidence 368999999999999999999999999999998 45555 5799999999876543211111000
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
+.+ ++|.+ +|
T Consensus 454 -ITA-------vcy~P---------------------------dG----------------------------------- 463 (712)
T KOG0283|consen 454 -ITA-------VCYSP---------------------------DG----------------------------------- 463 (712)
T ss_pred -hee-------EEecc---------------------------CC-----------------------------------
Confidence 011 12211 11
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec---------cCCCCeEEEEECCCCC--EEEEEEcCCCEE
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK---------AHTSPISALCFDPSGT--LLVTASVYGNNI 282 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~---------aH~spIsaLaFSPdGt--lLATAS~dGt~I 282 (882)
+. ++ .|..+|.+++|++...+.+..+. .|. .|+.+.|.|.-. +|||. . +..|
T Consensus 464 ----------k~-av---IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTS-n-DSrI 526 (712)
T KOG0283|consen 464 ----------KG-AV---IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTS-N-DSRI 526 (712)
T ss_pred ----------ce-EE---EEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEec-C-CCce
Confidence 11 01 24567888888888776654443 133 799999998554 77764 4 3459
Q ss_pred EEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC-cEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 283 rVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a-~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
||||..+. ..+.+| .|+.+. .-..-+|+.||++|+++|.|.-|+||++...
T Consensus 527 RI~d~~~~-----------------~lv~Kf-KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 527 RIYDGRDK-----------------DLVHKF-KGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEEeccch-----------------hhhhhh-cccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 99998531 133333 244332 2244689999999999999999999998654
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.12 E-value=1.6e-09 Score=125.84 Aligned_cols=200 Identities=17% Similarity=0.204 Sum_probs=141.0
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC-CEEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP-RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~-rlLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
.+++|.+|.+.+...+.+|+ |.+.|+++.... ..|++ +.|.++++|-.. ++..++.+|+.+ .
T Consensus 79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~as-------------V 143 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTAS-------------V 143 (745)
T ss_pred ccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchh-------------e
Confidence 47899999999999999997 999999999654 34444 568999999764 555667777663 2
Q ss_pred eeeE-EcC-cEEE-EeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccc-----
Q 002778 136 GPMA-VGP-RWLA-YASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE----- 207 (882)
Q Consensus 136 g~lA-lsp-R~LA-yss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~----- 207 (882)
++++ |.- .+|- .++..+++|..|.. . ++|++|...
T Consensus 144 WAv~~l~e~~~vTgsaDKtIklWk~~~~-l------------------------------------~tf~gHtD~VRgL~ 186 (745)
T KOG0301|consen 144 WAVASLPENTYVTGSADKTIKLWKGGTL-L------------------------------------KTFSGHTDCVRGLA 186 (745)
T ss_pred eeeeecCCCcEEeccCcceeeeccCCch-h------------------------------------hhhccchhheeeeE
Confidence 3333 322 3332 23457889976432 1 222222211
Q ss_pred cCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEec
Q 002778 208 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 287 (882)
Q Consensus 208 l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi 287 (882)
.+++++ + .++++||.|++||+ ++.++....+|+.-|.+++..+++.+++|++.|++ +|||+.
T Consensus 187 vl~~~~--------------f--lScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~ 248 (745)
T KOG0301|consen 187 VLDDSH--------------F--LSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKK 248 (745)
T ss_pred EecCCC--------------e--EeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeec
Confidence 011110 1 14689999999999 78899999999999999998888899999999776 899998
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
. .+...+.-- .-.||++.+=++|. |++|++||-|+||...+
T Consensus 249 ~-------------------e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 249 D-------------------ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred C-------------------ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 3 244444321 12699999988876 55777899999998874
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.11 E-value=9.8e-09 Score=107.24 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=74.2
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
..++.|++||+.+++.+..+..+ ..+.+++|+|+|.+|++++.++..+.+||... + ..+..+
T Consensus 92 ~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-------~----------~~~~~~ 153 (300)
T TIGR03866 92 EDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-------Y----------EIVDNV 153 (300)
T ss_pred CCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCC-------C----------eEEEEE
Confidence 45789999999998888877643 34678999999999999988776678889743 2 122222
Q ss_pred EecccCCcEEEEEEccCCCEEEEEe-CCCeEEEEECCCCCC
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGG 353 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS-~DGTVhIWdI~~~gg 353 (882)
..+ ..+..++|+|||++|++++ .+++|++||+.....
T Consensus 154 ~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 154 LVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred EcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 222 2457799999999986554 699999999986543
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=3.6e-09 Score=111.21 Aligned_cols=234 Identities=15% Similarity=0.174 Sum_probs=137.5
Q ss_pred ccCCeEEEEECCCC---eEEEEEE-cCCcEEEEEEc-C---CEEEEEE-CCeEEEEECCCCce--eEEEecCCCcccCCC
Q 002778 58 NSPTAVRFYSFQSH---CYEHVLR-FRSSVCMVRCS-P---RIVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQ 126 (882)
Q Consensus 58 ~sp~tVrlWDlkTG---~~V~tLk-f~s~V~sV~~S-~---rlLAV~~-d~qI~IWDa~T~e~--l~tL~t~p~p~~~~~ 126 (882)
.++++|||+..+.+ +.+.+|. |.++|..|++. | .+||.+. |++|.||.-.+++- .+....|..
T Consensus 30 sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~------ 103 (299)
T KOG1332|consen 30 SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSA------ 103 (299)
T ss_pred cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcc------
Confidence 37899999999864 3566776 99999999985 3 6888864 78999999877631 111112222
Q ss_pred CcccccccceeeEEcC----cEEEEeCC--CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccc
Q 002778 127 GAVGINVGYGPMAVGP----RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 200 (882)
Q Consensus 127 ~~~g~~~~~g~lAlsp----R~LAyss~--~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~Glikt 200 (882)
..+.+++.| =.||.+++ .+.+-. |..+.. .....+.+.
T Consensus 104 -------SVNsV~wapheygl~LacasSDG~vsvl~----------------------------~~~~g~-w~t~ki~~a 147 (299)
T KOG1332|consen 104 -------SVNSVAWAPHEYGLLLACASSDGKVSVLT----------------------------YDSSGG-WTTSKIVFA 147 (299)
T ss_pred -------cceeecccccccceEEEEeeCCCcEEEEE----------------------------EcCCCC-ccchhhhhc
Confidence 234555544 23444332 222211 000000 000000000
Q ss_pred cccccccc--CCCC-CCCCccCCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECCCC----CE
Q 002778 201 LSKYCQEL--LPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPSG----TL 271 (882)
Q Consensus 201 Ls~~~~~l--~pdg-s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~--~v~~f~aH~spIsaLaFSPdG----tl 271 (882)
-.--++.. .|.. ....+...+.-++-.++ +|+.|..|+||+..+++ .-.+|.+|++.|..+|+.|.- ..
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlv--SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~ 225 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV--SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST 225 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceee--ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence 00000000 0000 00011111111122222 67889999999998864 335699999999999999964 58
Q ss_pred EEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 272 LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 272 LATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
||++|.||+ +.||..... ...|.. ..+.+| +..++.++||..|..||++..|+.|.||.=+..
T Consensus 226 iAS~SqDg~-viIwt~~~e---------~e~wk~--tll~~f-----~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 226 IASCSQDGT-VIIWTKDEE---------YEPWKK--TLLEEF-----PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred eEEecCCCc-EEEEEecCc---------cCcccc--cccccC-----CcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 999999998 569987421 011211 222222 356999999999999999999999999986654
Q ss_pred C
Q 002778 352 G 352 (882)
Q Consensus 352 g 352 (882)
|
T Consensus 289 G 289 (299)
T KOG1332|consen 289 G 289 (299)
T ss_pred C
Confidence 4
No 119
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=7.8e-10 Score=127.27 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=95.3
Q ss_pred cCCCceEEEEECCCCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~a-H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
|-.+|.|.|||..+.+.+..+.. |...|.+|+++ +..|.+++.+|. |.++|+... .++.
T Consensus 235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~-I~~~dvR~~-----------------~~~~ 294 (484)
T KOG0305|consen 235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGK-ILNHDVRIS-----------------QHVV 294 (484)
T ss_pred eecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCc-EEEEEEecc-----------------hhhh
Confidence 34589999999999999999998 99999999999 667888888775 899999641 1111
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 371 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp 371 (882)
...+||. ..|..+.|++|+++||+|+.|+.++|||.....-...+..|.+.|....+.|
T Consensus 295 ~~~~~H~-qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP 353 (484)
T KOG0305|consen 295 STLQGHR-QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCP 353 (484)
T ss_pred hhhhccc-ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCC
Confidence 1124554 4799999999999999999999999999977777778899988776655554
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.09 E-value=2.9e-09 Score=114.12 Aligned_cols=131 Identities=15% Similarity=0.235 Sum_probs=100.3
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC-----CEEEEEEC-CeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-----RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~-----rlLAV~~d-~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
-++++|+||..|-+..-.+++.+.||+-+++| -++|++.+ -+|++.|+..|..-++|.+|..
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~------------ 189 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD------------ 189 (397)
T ss_pred ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC------------
Confidence 46999999999999999999999999988886 36777764 5899999999999999988865
Q ss_pred ccceeeEE--cC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 133 VGYGPMAV--GP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 133 ~~~g~lAl--sp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
+.||+ +| .|+-+
T Consensus 190 ---~vlaV~Wsp~~e~vLa------------------------------------------------------------- 205 (397)
T KOG4283|consen 190 ---GVLAVEWSPSSEWVLA------------------------------------------------------------- 205 (397)
T ss_pred ---ceEEEEeccCceeEEE-------------------------------------------------------------
Confidence 23443 33 22221
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECCCC------------c---EEEEeccCCCCeEEEEECCCCCEEE
Q 002778 209 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------------A---IISQFKAHTSPISALCFDPSGTLLV 273 (882)
Q Consensus 209 ~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~------------~---~v~~f~aH~spIsaLaFSPdGtlLA 273 (882)
+|+.||.|++||+..- + .+++-.+|.+.|..+||..+|.+|+
T Consensus 206 -----------------------tgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 206 -----------------------TGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred -----------------------ecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence 3455666677766421 1 2233457889999999999999999
Q ss_pred EEEcCCCEEEEEecCC
Q 002778 274 TASVYGNNINIFRIMP 289 (882)
Q Consensus 274 TAS~dGt~IrVWdi~p 289 (882)
+.+.|+. |++|+...
T Consensus 263 ~~gtd~r-~r~wn~~~ 277 (397)
T KOG4283|consen 263 SCGTDDR-IRVWNMES 277 (397)
T ss_pred hccCccc-eEEeeccc
Confidence 9999775 99999864
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=2.1e-09 Score=115.98 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=115.3
Q ss_pred cCCcEEEEEEcCCEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccC
Q 002778 79 FRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNS 157 (882)
Q Consensus 79 f~s~V~sV~~S~rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdt 157 (882)
|.+.|.+|++++.+||+|. |++|+|||+++...+..|..|... .+++.| |.+.
T Consensus 42 H~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~Hags-------------itaL~F------~~~~------- 95 (362)
T KOG0294|consen 42 HAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGS-------------ITALKF------YPPL------- 95 (362)
T ss_pred cccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccc-------------eEEEEe------cCCc-------
Confidence 6788999999999999975 789999999998887777655330 122222 1110
Q ss_pred CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCc
Q 002778 158 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG 237 (882)
Q Consensus 158 G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG 237 (882)
| .+ .+ + +++.||
T Consensus 96 -----------------S-------------------------------------------~s----hL-l---S~sdDG 107 (362)
T KOG0294|consen 96 -----------------S-------------------------------------------KS----HL-L---SGSDDG 107 (362)
T ss_pred -----------------c-------------------------------------------hh----he-e---eecCCC
Confidence 0 00 00 0 357799
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecc
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 317 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~ 317 (882)
.|.+||...-.++..|++|.+.|+.|+.+|+|++..+-+.|+ .+|.|++.. | +.-+.+.-+.
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~-~lr~WNLV~-------G----------r~a~v~~L~~ 169 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQ-VLRTWNLVR-------G----------RVAFVLNLKN 169 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCc-eeeeehhhc-------C----------ccceeeccCC
Confidence 999999999999999999999999999999999888888855 699999975 3 2223332222
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 318 TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 318 t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.+ ..|.|+|.|.+++++..+ .|-||.+...
T Consensus 170 -~a--t~v~w~~~Gd~F~v~~~~-~i~i~q~d~A 199 (362)
T KOG0294|consen 170 -KA--TLVSWSPQGDHFVVSGRN-KIDIYQLDNA 199 (362)
T ss_pred -cc--eeeEEcCCCCEEEEEecc-EEEEEecccH
Confidence 23 349999999988888755 5899988754
No 122
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.08 E-value=2.3e-09 Score=119.30 Aligned_cols=210 Identities=14% Similarity=0.180 Sum_probs=133.9
Q ss_pred CCCCeEEEEEEcCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC--
Q 002778 68 FQSHCYEHVLRFRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-- 142 (882)
Q Consensus 68 lkTG~~V~tLkf~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp-- 142 (882)
+.+|.-+|...-+ .+.++...+ ..+..+ -|..+.|||-.+.+.+.++.+|... ...+.+.|
T Consensus 208 ~ash~gLH~t~~p-gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kk-------------i~~v~~~~~~ 273 (506)
T KOG0289|consen 208 VASHTGLHSTSTP-GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKK-------------ITSVKFHKDL 273 (506)
T ss_pred cCCCcceeccCCC-CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceE-------------EEEEEeccch
Confidence 3444444433322 366666655 455554 4568999999998888888877652 12333444
Q ss_pred cEEEE--eCCCeEeccCCCCCC-ccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccC
Q 002778 143 RWLAY--ASNTLLLSNSGRLSP-QNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSP 219 (882)
Q Consensus 143 R~LAy--ss~~v~lwdtG~vs~-q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ 219 (882)
+.++. ++..+.+|..+..+- +.+.+ .+ +....++-
T Consensus 274 ~~v~~aSad~~i~vws~~~~s~~~~~~~-------------------h~-----------------------~~V~~ls~ 311 (506)
T KOG0289|consen 274 DTVITASADEIIRVWSVPLSSEPTSSRP-------------------HE-----------------------EPVTGLSL 311 (506)
T ss_pred hheeecCCcceEEeeccccccCcccccc-------------------cc-----------------------ccceeeee
Confidence 22332 334577887532210 00000 00 00000111
Q ss_pred CCccccccccccccCCCceEEEEECCCCcEEEEeccC--CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCC
Q 002778 220 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG 297 (882)
Q Consensus 220 ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH--~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG 297 (882)
.+.+.++. .++.||+.-..|+.++..+.....- .-.+++++|+|||.+|+|+..|| .++|||++. +
T Consensus 312 h~tgeYll----sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~-~vkiwdlks-------~ 379 (506)
T KOG0289|consen 312 HPTGEYLL----SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG-VVKIWDLKS-------Q 379 (506)
T ss_pred ccCCcEEE----EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCc-eEEEEEcCC-------c
Confidence 22233432 4588999999999999987766542 23589999999999999999977 599999963 2
Q ss_pred CCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccc
Q 002778 298 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 298 ~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l 357 (882)
..+.+|. | +.++|..|+||.+|-|||++++|+.|++||+.......++
T Consensus 380 ----------~~~a~Fp-g-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 380 ----------TNVAKFP-G-HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred ----------cccccCC-C-CCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee
Confidence 1344443 5 4478999999999999999999999999999876544433
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=4.8e-10 Score=131.28 Aligned_cols=100 Identities=14% Similarity=0.269 Sum_probs=83.4
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
+|++||+|++||+...+...+|++....|..++|+| .+..+|++...| .+++||+.-. . +..
T Consensus 151 SGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG-~lqlWDlRqp------~----------r~~ 213 (839)
T KOG0269|consen 151 SGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG-YLQLWDLRQP------D----------RCE 213 (839)
T ss_pred ecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc-eEEEeeccCc------h----------hHH
Confidence 568999999999999999999999999999999999 567888888755 5999999631 0 122
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
.+| ..++..|.++.|+|+..|||+|+.|++|+||++..
T Consensus 214 ~k~--~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 214 KKL--TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred HHh--hcccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence 222 33456899999999999999999999999999975
No 124
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=1.4e-08 Score=105.73 Aligned_cols=185 Identities=15% Similarity=0.099 Sum_probs=130.6
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEE-EcCCEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVR-CSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~-~S~rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
+-+|.+-|..+|+..+.+. |.+.|.++- ++.-.+|.+. |++|++||++-..++.++...-. +.+ ..
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~---------~~g--le 230 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH---------DGG--LE 230 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCccc---------CCC--cc
Confidence 4577778999999999997 889999875 6777788764 77899999998877777753111 000 00
Q ss_pred eeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCC
Q 002778 137 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 216 (882)
Q Consensus 137 ~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~ 216 (882)
. +.|+.++.|
T Consensus 231 s------------------------------------------savaav~vd---------------------------- 240 (350)
T KOG0641|consen 231 S------------------------------------------SAVAAVAVD---------------------------- 240 (350)
T ss_pred c------------------------------------------ceeEEEEEC----------------------------
Confidence 0 111111111
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCC
Q 002778 217 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 296 (882)
Q Consensus 217 ~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~s 296 (882)
|.++.++ +|..|....+||+..++.++.|..|+..|.++.|||...+|.|+|.| ..|++=|+.
T Consensus 241 ----psgrll~----sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd-~~ikltdlq-------- 303 (350)
T KOG0641|consen 241 ----PSGRLLA----SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD-MKIKLTDLQ-------- 303 (350)
T ss_pred ----CCcceee----eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEeccc-ceEEEeecc--------
Confidence 1122221 45667889999999999999999999999999999999999999995 469999985
Q ss_pred CCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 297 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 297 G~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
| |.. +.+-..--+.+...+..+.|.|..--+.++|.|.|+.+|.++
T Consensus 304 g----dla---~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 304 G----DLA---HELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred c----chh---hcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 2 111 111111112233345558999999999999999999999875
No 125
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=2.8e-09 Score=116.07 Aligned_cols=189 Identities=19% Similarity=0.217 Sum_probs=127.7
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEc----CCEEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCS----PRIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S----~rlLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
+-++|++||..||+.+..++ ++..+..|+|. +..|.+ +.|+.|++||+++......+..-..| +.
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-----~~---- 118 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-----GT---- 118 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-----CC----
Confidence 56899999999999999998 67777788874 355555 56789999999987765555431111 00
Q ss_pred ccceeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCC
Q 002778 133 VGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 210 (882)
Q Consensus 133 ~~~g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~p 210 (882)
.+..++.+. +.+|. |. +
T Consensus 119 -~f~~ld~nck~~ii~~------------------------------------------------Gt---------E--- 137 (376)
T KOG1188|consen 119 -PFICLDLNCKKNIIAC------------------------------------------------GT---------E--- 137 (376)
T ss_pred -cceEeeccCcCCeEEe------------------------------------------------cc---------c---
Confidence 012222211 11110 00 0
Q ss_pred CCCCCCccCCCccccccccccccCCCceEEEEECCCCcE-EEE-eccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEec
Q 002778 211 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQ-FKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRI 287 (882)
Q Consensus 211 dgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~-v~~-f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi 287 (882)
-...+-.|.+||++..+. +.. +..|.+.|+.|+|.|+. .+|+|||.|| .|+|||+
T Consensus 138 ---------------------~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~ 195 (376)
T KOG1188|consen 138 ---------------------LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG-LVNLFDT 195 (376)
T ss_pred ---------------------cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc-eEEeeec
Confidence 012345699999988765 443 56899999999999965 7999999987 6999999
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECCCCCCcc
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
+-. ...-..+..+. +.+.|..+.|..++ +.|.+-+..+|..+|+++......
T Consensus 196 ~~d-------------~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 196 KKD-------------NEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred CCC-------------cchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 632 01112333332 22469999999998 458888899999999999876444
No 126
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.04 E-value=1.5e-09 Score=122.65 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=78.8
Q ss_pred cCCCceEEEEECCCCcE---EEEeccCCC--CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 002778 233 MDNAGIVVVKDFVTRAI---ISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~---v~~f~aH~s--pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
|..||.|++||..+... ...-.||.. .|++|+||+||++|+|-+.|++ ++|||+... .
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~----------------k 397 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQF----------------K 397 (641)
T ss_pred cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecccc----------------c
Confidence 46789999999865432 233458988 8999999999999999999886 899999631 1
Q ss_pred cEEEEEEecccC-CcEEEEEEccCCCEEEEEeC------CCeEEEEECCCCCCccccc
Q 002778 308 VHLYKLHRGITS-ATIQDICFSHYSQWIAIVSS------KGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 308 ~~l~~L~RG~t~-a~I~sLaFSPDg~~LAsgS~------DGTVhIWdI~~~gg~~~l~ 358 (882)
..|... .|..+ -.-++++||||.+.|++|++ -|++.+||-.++.....+.
T Consensus 398 kpL~~~-tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 398 KPLNVR-TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred cchhhh-cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 233322 23222 24578999999999999875 4678888887776555443
No 127
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=1.8e-08 Score=115.23 Aligned_cols=226 Identities=19% Similarity=0.124 Sum_probs=127.6
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-C---CeEEEEECCCCceeEEEecCCCcccCCCCccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-A---TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d---~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
...|.+||...+. .+.+. +...|.++++++ +.||.+. + .+|++||+.+++.. .+...+..
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g~----------- 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVASFRGH----------- 249 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEecCCCc-----------
Confidence 3689999986544 45554 667899999987 4666543 3 26999999887642 22211110
Q ss_pred ccceeeEEcC--cEEEEeCC---CeEec--cCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccc
Q 002778 133 VGYGPMAVGP--RWLAYASN---TLLLS--NSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 205 (882)
Q Consensus 133 ~~~g~lAlsp--R~LAyss~---~v~lw--dtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~ 205 (882)
....+++| ++|+|... ...|| +...-....++ ..
T Consensus 250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt------------------------------------~~- 290 (429)
T PRK01742 250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT------------------------------------SG- 290 (429)
T ss_pred --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec------------------------------------cC-
Confidence 12457777 78887532 23333 21000000011 00
Q ss_pred cccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 002778 206 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINI 284 (882)
Q Consensus 206 ~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrV 284 (882)
.+.......+++++.+.+. .+.+|..+||++... .....+ .|.. ..++|+|||++||.++.+ . |.+
T Consensus 291 -----~~~~~~~~wSpDG~~i~f~---s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~-~-i~~ 357 (429)
T PRK01742 291 -----AGNNTEPSWSPDGQSILFT---SDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD-N-VVK 357 (429)
T ss_pred -----CCCcCCEEECCCCCEEEEE---ECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC-C-EEE
Confidence 0001122333444544332 245677788876432 222333 4443 457899999999988763 3 556
Q ss_pred EecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC--CCCccccccccC
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP--FGGDSGFQTLSS 362 (882)
Q Consensus 285 Wdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~--~gg~~~l~~H~~ 362 (882)
||+.. | ....+..+. ...+++|||||++|+.++.+|.+.+|.+.. +.....+.+|..
T Consensus 358 ~Dl~~-------g-----------~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g 416 (429)
T PRK01742 358 QDLTS-------G-----------STEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG 416 (429)
T ss_pred EECCC-------C-----------CeEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC
Confidence 89853 2 111221121 235688999999999999999999988743 333445666654
Q ss_pred CCCCCcccC
Q 002778 363 QGGDPYLFP 371 (882)
Q Consensus 363 ~~~~~~~sp 371 (882)
.+..+.++|
T Consensus 417 ~~~~p~wsp 425 (429)
T PRK01742 417 QVKFPAWSP 425 (429)
T ss_pred CCCCcccCC
Confidence 444444444
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=2.4e-08 Score=116.10 Aligned_cols=197 Identities=17% Similarity=0.194 Sum_probs=132.8
Q ss_pred cCCeEEEEECCCCeEEEEE-E--cCCcEEEEEEcC--CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVL-R--FRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tL-k--f~s~V~sV~~S~--rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.++.|.||+++.+-+.... . -+..|-++++.. ++..+++++.|.-||+.+++.++.+.....
T Consensus 45 t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg------------- 111 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG------------- 111 (691)
T ss_pred cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCc-------------
Confidence 4678999999886544433 2 346799999973 677778899999999999998877742211
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
..+.||+.| .+..
T Consensus 112 ~IWsiai~p----------------------------------~~~~--------------------------------- 124 (691)
T KOG2048|consen 112 AIWSIAINP----------------------------------ENTI--------------------------------- 124 (691)
T ss_pred ceeEEEeCC----------------------------------ccce---------------------------------
Confidence 124444322 0000
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEE--EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v--~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~ 291 (882)
++ .+..||.+..++...+... ..|.--++.|.+|+|+|+|+.||+|+.|| .|++||+..
T Consensus 125 ------------l~----IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~-- 185 (691)
T KOG2048|consen 125 ------------LA----IGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKS-- 185 (691)
T ss_pred ------------EE----eecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc-eEEEEEcCC--
Confidence 00 1234665666666555433 33444468999999999999999999977 699999964
Q ss_pred ccCCCCCCccccCCcccE-----EEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCC
Q 002778 292 MRSGSGNHKYDWNSSHVH-----LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 366 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~-----l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~ 366 (882)
|. -.+ +-++.++ ....||+|.|=.|+ .||+|.+.|||..||-..+.....+.-|.+.+.+
T Consensus 186 -----~~--------t~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 186 -----GQ--------TLHIITMQLDRLSKR-EPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLA 250 (691)
T ss_pred -----Cc--------eEEEeeecccccccC-CceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeE
Confidence 21 012 2223222 23469999998776 6889999999999999887766677777766544
Q ss_pred Ccc
Q 002778 367 PYL 369 (882)
Q Consensus 367 ~~~ 369 (882)
..+
T Consensus 251 Lav 253 (691)
T KOG2048|consen 251 LAV 253 (691)
T ss_pred EEE
Confidence 333
No 129
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.01 E-value=1.1e-07 Score=98.86 Aligned_cols=181 Identities=24% Similarity=0.344 Sum_probs=129.2
Q ss_pred CCeEEEEECCC-CeEEEEEE-cCCcEEEEEEcC--CEEEEEE--CCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 60 PTAVRFYSFQS-HCYEHVLR-FRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 60 p~tVrlWDlkT-G~~V~tLk-f~s~V~sV~~S~--rlLAV~~--d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
++++++||..+ +..+..+. |...|..+.+++ +.++++. +..+++|++.+.+.+.++..|..+
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 200 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------ 200 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc------------
Confidence 67999999998 77777776 778899999987 4566554 778999999987776666543221
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
... +++.++ +..++
T Consensus 201 -v~~-------~~~~~~---------------------------~~~~~------------------------------- 214 (466)
T COG2319 201 -VSS-------LAFSPD---------------------------GGLLI------------------------------- 214 (466)
T ss_pred -eEE-------EEEcCC---------------------------cceEE-------------------------------
Confidence 111 222211 00000
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 292 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~-~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~ 292 (882)
. ++..++.|++||...+..+. .+..|.... ...|+|++.++++++.++. +++|++...
T Consensus 215 ---------------~--~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~-- 273 (466)
T COG2319 215 ---------------A--SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSS-- 273 (466)
T ss_pred ---------------E--EecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCC--
Confidence 0 12468889999999888887 799998886 4489999999998888665 999999641
Q ss_pred cCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 293 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 293 ~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
. ..+..+ .++ ...|.++.|+|++..+++++.|+++++|++.......
T Consensus 274 ----~----------~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 274 ----S----------SLLRTL-SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred ----C----------cEEEEE-ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 1 123333 343 4579999999999999999999999999887654433
No 130
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.00 E-value=6.9e-09 Score=120.56 Aligned_cols=135 Identities=16% Similarity=0.159 Sum_probs=94.6
Q ss_pred CCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC---CCCEEEEEEcCCCEEEEEecCCCcccCCC
Q 002778 220 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP---SGTLLVTASVYGNNINIFRIMPSCMRSGS 296 (882)
Q Consensus 220 ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP---dGtlLATAS~dGt~IrVWdi~p~~~~~~s 296 (882)
+++++.++ +|+.-|.++|||+.+.+....+.||.+.|.+|.||- .-++||+||. |..|+|||+...+..-++
T Consensus 468 Sp~gqhLA----sGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr-dRlIHV~Dv~rny~l~qt 542 (1080)
T KOG1408|consen 468 SPDGQHLA----SGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR-DRLIHVYDVKRNYDLVQT 542 (1080)
T ss_pred CCCcceec----ccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC-CceEEEEecccccchhhh
Confidence 34455544 578889999999999998899999999999999985 2469999998 778999999754321000
Q ss_pred -CCCccc-----cCCcc--cE--------------------EEEEEecccC---CcEEEEEEccCCCEEEEEeCCCeEEE
Q 002778 297 -GNHKYD-----WNSSH--VH--------------------LYKLHRGITS---ATIQDICFSHYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 297 -G~~~~d-----~sss~--~~--------------------l~~L~RG~t~---a~I~sLaFSPDg~~LAsgS~DGTVhI 345 (882)
..++.. +.++. ++ ...+.|++.. ..+++++.-|..+++++++-|..|+|
T Consensus 543 ld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrniri 622 (1080)
T KOG1408|consen 543 LDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRI 622 (1080)
T ss_pred hcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEE
Confidence 000000 00000 00 0112233321 36999999999999999999999999
Q ss_pred EECCCCCCcccccc
Q 002778 346 FVLSPFGGDSGFQT 359 (882)
Q Consensus 346 WdI~~~gg~~~l~~ 359 (882)
|+++.++....|++
T Consensus 623 f~i~sgKq~k~FKg 636 (1080)
T KOG1408|consen 623 FDIESGKQVKSFKG 636 (1080)
T ss_pred Eeccccceeeeecc
Confidence 99998877766643
No 131
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=2.6e-09 Score=114.99 Aligned_cols=176 Identities=18% Similarity=0.240 Sum_probs=108.1
Q ss_pred ccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcCCEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
..+++|+|||.+....+.++.-...|+++..+..+|+|| .+.+|.+||+++++.-++.++.+. +..+.
T Consensus 113 sWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-----------kyqtR 181 (323)
T KOG1036|consen 113 SWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-----------KYQTR 181 (323)
T ss_pred ccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccc-----------eeEEE
Confidence 378999999999877777777777999999999888885 567899999999887665543322 11223
Q ss_pred eeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC---
Q 002778 137 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS--- 213 (882)
Q Consensus 137 ~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs--- 213 (882)
.+++-|.-=+|. +.. -.|.+.+.|--++ +-++. |++.-.|.....++.
T Consensus 182 ~v~~~pn~eGy~-----~sS--------------------ieGRVavE~~d~s--~~~~s--kkyaFkCHr~~~~~~~~~ 232 (323)
T KOG1036|consen 182 CVALVPNGEGYV-----VSS--------------------IEGRVAVEYFDDS--EEAQS--KKYAFKCHRLSEKDTEII 232 (323)
T ss_pred EEEEecCCCceE-----EEe--------------------ecceEEEEccCCc--hHHhh--hceeEEeeecccCCceEE
Confidence 333322111111 111 1122222221111 00100 111112221111111
Q ss_pred --CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 002778 214 --SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 277 (882)
Q Consensus 214 --~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~ 277 (882)
..++.+.+-.+.++ +|+.||.|.+||+.+.+.+.+|..-...|.+|+|+.+|.+||+|+.
T Consensus 233 yPVNai~Fhp~~~tfa----TgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFA----TGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEeceeEeccccceEE----ecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 11233333233322 7899999999999999999999888788999999999999999986
No 132
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.99 E-value=1.1e-08 Score=114.41 Aligned_cols=200 Identities=17% Similarity=0.144 Sum_probs=130.7
Q ss_pred cccccccCccCCCCCcccc---cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC---CEEEEE-ECCeEEEEECCCCce
Q 002778 40 HLGGVRDGMMDSQSGNCVN---SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---RIVAVG-LATQIYCFDALTLEN 111 (882)
Q Consensus 40 ~~~~v~~~~~~~~~~~~~~---sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~---rlLAV~-~d~qI~IWDa~T~e~ 111 (882)
|.-+|-.-+.+....|.++ .++||++||+.+|++..++. |...|.++.+.+ .+|+.| .+++|.++|.+...+
T Consensus 242 HTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~ 321 (463)
T KOG0270|consen 242 HTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN 321 (463)
T ss_pred chHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc
Confidence 3334433333433444443 57999999999999999999 677899999986 566654 588999999875211
Q ss_pred eEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchh
Q 002778 112 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 191 (882)
Q Consensus 112 l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk 191 (882)
. . . .|=.-+.--...|+- ++
T Consensus 322 s-------~-----------------~----~wk~~g~VEkv~w~~----------------~s---------------- 341 (463)
T KOG0270|consen 322 S-------G-----------------K----EWKFDGEVEKVAWDP----------------HS---------------- 341 (463)
T ss_pred c-------C-----------------c----eEEeccceEEEEecC----------------CC----------------
Confidence 0 0 0 010000001122320 00
Q ss_pred hhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCC-
Q 002778 192 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSG- 269 (882)
Q Consensus 192 ~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdG- 269 (882)
...+ + .+..||+|+-+|+++. +++.+++||.++|++|++++.-
T Consensus 342 ------------------------e~~f--------~---~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 342 ------------------------ENSF--------F---VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP 386 (463)
T ss_pred ------------------------ceeE--------E---EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC
Confidence 0000 0 1246899999999875 8999999999999999999864
Q ss_pred CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEEC
Q 002778 270 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 270 tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI 348 (882)
.+|+|+|.++ .++||++.... + ...+.+..++- +..|.++.|+- -+||.|+..+-++|||+
T Consensus 387 ~~l~t~s~d~-~Vklw~~~~~~-----~------~~v~~~~~~~~------rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 387 GLLSTASTDK-VVKLWKFDVDS-----P------KSVKEHSFKLG------RLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cceeeccccc-eEEEEeecCCC-----C------ccccccccccc------ceeecccCCCcceEEEecCccceEEEeec
Confidence 5889999966 59999995321 0 01112333332 26778888875 46888889999999999
Q ss_pred CCCC
Q 002778 349 SPFG 352 (882)
Q Consensus 349 ~~~g 352 (882)
.+..
T Consensus 449 ~~~~ 452 (463)
T KOG0270|consen 449 FTNS 452 (463)
T ss_pred ccCh
Confidence 7653
No 133
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.98 E-value=3.5e-08 Score=106.28 Aligned_cols=237 Identities=17% Similarity=0.123 Sum_probs=146.9
Q ss_pred CCCCccc---ccCCeEEEEECCC-CeEEEEE--EcCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEEEecCCCc
Q 002778 51 SQSGNCV---NSPTAVRFYSFQS-HCYEHVL--RFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVP 121 (882)
Q Consensus 51 ~~~~~~~---~sp~tVrlWDlkT-G~~V~tL--kf~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p 121 (882)
++..|.+ +.+++||+|++.. |..+-.- .+.++|++|+++. ++.+.+.|+++++||+.+++ ..++..|..|
T Consensus 37 P~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~p 115 (347)
T KOG0647|consen 37 PQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAP 115 (347)
T ss_pred cccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccc
Confidence 3444444 4789999999976 6666533 3889999999986 34444568999999999995 4556666664
Q ss_pred ccCCCCcccccccceeeEE-cC---cEEEEeC--CCeEeccCCCCCC-ccCCCCCCCCCcCCCCCccEEEeeccchhhhh
Q 002778 122 QLAGQGAVGINVGYGPMAV-GP---RWLAYAS--NTLLLSNSGRLSP-QNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 194 (882)
Q Consensus 122 ~~~~~~~~g~~~~~g~lAl-sp---R~LAyss--~~v~lwdtG~vs~-q~lt~~~vs~s~SP~~GslVA~~A~essk~la 194 (882)
.. .+.+ .+ ..|+..+ .+++.||+-.-.| ..+.. |+ .-|++|--+.+
T Consensus 116 vk-------------t~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L--------Pe-----RvYa~Dv~~pm- 168 (347)
T KOG0647|consen 116 VK-------------TCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL--------PE-----RVYAADVLYPM- 168 (347)
T ss_pred ee-------------EEEEecCCCcceeEecccccceeecccCCCCeeeeeec--------cc-----eeeehhccCce-
Confidence 22 2221 11 3456653 5789998621000 00000 00 01222211110
Q ss_pred ccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCC----eEEEEECCCCC
Q 002778 195 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSP----ISALCFDPSGT 270 (882)
Q Consensus 195 ~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~sp----IsaLaFSPdGt 270 (882)
++ .+-.+..|.+|++.++. ..|+.+.+| +.+|+.-+|..
T Consensus 169 --------------------------------~v---Vata~r~i~vynL~n~~--te~k~~~SpLk~Q~R~va~f~d~~ 211 (347)
T KOG0647|consen 169 --------------------------------AV---VATAERHIAVYNLENPP--TEFKRIESPLKWQTRCVACFQDKD 211 (347)
T ss_pred --------------------------------eE---EEecCCcEEEEEcCCCc--chhhhhcCcccceeeEEEEEecCC
Confidence 01 12346779999998753 455555554 67888888888
Q ss_pred EEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecc--cC---CcEEEEEEccCCCEEEEEeCCCeEEE
Q 002778 271 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI--TS---ATIQDICFSHYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 271 lLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~--t~---a~I~sLaFSPDg~~LAsgS~DGTVhI 345 (882)
..|-||..|. +-|..+.+.- ....-.++-+|.. .. -.|.+|+|.|.-..|++.++|||+-.
T Consensus 212 ~~alGsiEGr-v~iq~id~~~-------------~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~F 277 (347)
T KOG0647|consen 212 GFALGSIEGR-VAIQYIDDPN-------------PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSF 277 (347)
T ss_pred ceEeeeecce-EEEEecCCCC-------------ccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEE
Confidence 7899999897 6788886410 0001223333421 11 24789999999999999999999999
Q ss_pred EECCCCCCccccccccCCCCC
Q 002778 346 FVLSPFGGDSGFQTLSSQGGD 366 (882)
Q Consensus 346 WdI~~~gg~~~l~~H~~~~~~ 366 (882)
||-+......+...|..++.+
T Consensus 278 WDkdar~kLk~s~~~~qpItc 298 (347)
T KOG0647|consen 278 WDKDARTKLKTSETHPQPITC 298 (347)
T ss_pred ecchhhhhhhccCcCCCccce
Confidence 998876655555666554433
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.98 E-value=1.1e-07 Score=107.73 Aligned_cols=272 Identities=13% Similarity=0.141 Sum_probs=158.8
Q ss_pred CeEEEEECCCCeEEEEEE-c----CCcEEEEEEcC--CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 61 TAVRFYSFQSHCYEHVLR-F----RSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLk-f----~s~V~sV~~S~--rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
+.+.||+++++..++.-. | +..|.+|.|.+ +.|..-.++.|.||+..+.+..++...|+. ++
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~g---------gv-- 290 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDG---------GV-- 290 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCC---------ce--
Confidence 678999999999887653 2 35699999976 455444567899999988776666655554 11
Q ss_pred cceeeEEcC-cEEEEeC--CCeEeccCCCCCCccCCCCC-CCC--CcCCCCCccEEEeeccchhhhhcccc-----cccc
Q 002778 134 GYGPMAVGP-RWLAYAS--NTLLLSNSGRLSPQNLTPSG-VSP--STSPGGSSLVARYAMEHSKQFAAGLS-----KTLS 202 (882)
Q Consensus 134 ~~g~lAlsp-R~LAyss--~~v~lwdtG~vs~q~lt~~~-vs~--s~SP~~GslVA~~A~essk~la~Gli-----ktLs 202 (882)
+..+.+.. ..|. .+ ..+.+|+..-...+....|. .-+ .-.+..+.+.. ....-.+..|-+ .+..
T Consensus 291 -~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~v---GTtrN~iL~Gt~~~~f~~~v~ 365 (626)
T KOG2106|consen 291 -FSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILV---GTTRNFILQGTLENGFTLTVQ 365 (626)
T ss_pred -EEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEE---eeccceEEEeeecCCceEEEE
Confidence 23333333 4444 43 25778873111111111110 000 00011111110 000000111110 0001
Q ss_pred ccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEE
Q 002778 203 KYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNI 282 (882)
Q Consensus 203 ~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~I 282 (882)
++..++. . +..-++...+ .+.++|+.|+||+ ..+++-+. --..|+.|+.|+|.| .||.+...|+ -
T Consensus 366 gh~delw----g--la~hps~~q~----~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~-w 430 (626)
T KOG2106|consen 366 GHGDELW----G--LATHPSKNQL----LTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGR-W 430 (626)
T ss_pred eccccee----e--EEcCCChhhe----eeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccce-E
Confidence 1111110 0 0111111111 1678999999999 33443222 235789999999999 8998988887 5
Q ss_pred EEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccc-cccc
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF-QTLS 361 (882)
Q Consensus 283 rVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l-~~H~ 361 (882)
.|.|+.+ +.+-.++. .+++|..++|||||.+||+||.|+.|.||.++..|..... .-|.
T Consensus 431 ~V~d~e~------------------~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~ 490 (626)
T KOG2106|consen 431 FVLDTET------------------QDLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS 490 (626)
T ss_pred EEEeccc------------------ceeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec
Confidence 6888854 24444443 2678999999999999999999999999999987765533 3332
Q ss_pred CCCCCCcccCCCCCCcccCCCCccccccc
Q 002778 362 SQGGDPYLFPVLSLPWWCTSSGISEQQCV 390 (882)
Q Consensus 362 ~~~~~~~~sp~~~lpw~~~s~~~~~Q~~~ 390 (882)
- +|+..|-|-..+.+...|.-+
T Consensus 491 ------g-s~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 491 ------G-SPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred ------C-ceeEEeeecCCCceEEeccCc
Confidence 1 778888888888887766543
No 135
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.7e-09 Score=124.01 Aligned_cols=246 Identities=17% Similarity=0.146 Sum_probs=136.3
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC----CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~----rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+++||||.+.||.|++++.|.+.|.+|+|+| -+|||+.+..+.|-+..-|..+..-.+..
T Consensus 420 dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~e--------------- 484 (733)
T KOG0650|consen 420 DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKE--------------- 484 (733)
T ss_pred CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhh---------------
Confidence 46999999999999999999999999999997 37888887776665544342221111100
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCC-------CCccCCCCCCCCCcCCCCCccEEEeeccch-hhhhcccccccccccc
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRL-------SPQNLTPSGVSPSTSPGGSSLVARYAMEHS-KQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~v-------s~q~lt~~~vs~s~SP~~GslVA~~A~ess-k~la~GliktLs~~~~ 206 (882)
.++-.| -.+....++..|..+.. ....-.+..+.--+--..|..+|.++.+.+ +.+ ++.+|++...
T Consensus 485 --ll~~~~-~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V---liHQLSK~~s 558 (733)
T KOG0650|consen 485 --LLASAP-NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV---LIHQLSKRKS 558 (733)
T ss_pred --hhhcCC-CccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE---EEEecccccc
Confidence 000000 00001112223321100 000000000000000122334443333221 111 1112222221
Q ss_pred cc---CCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 002778 207 EL---LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 207 ~l---~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
.. ...|......|-+....+-+ .....|+|||+....+++.+..-...|+.|+.+|.|.-|+.++.++. +.
T Consensus 559 Q~PF~kskG~vq~v~FHPs~p~lfV-----aTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k-~~ 632 (733)
T KOG0650|consen 559 QSPFRKSKGLVQRVKFHPSKPYLFV-----ATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK-MC 632 (733)
T ss_pred cCchhhcCCceeEEEecCCCceEEE-----EeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe-eE
Confidence 10 00111111112221112111 23467999999988888888877889999999999999999998765 77
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
.||+.-. ...|+..|-|. ..|++|+|.+-=-.+|++|+|||++||--.
T Consensus 633 WfDldls-----------------skPyk~lr~H~-~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 633 WFDLDLS-----------------SKPYKTLRLHE-KAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred EEEcccC-----------------cchhHHhhhhh-hhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 9998531 12333334444 459999999988899999999999999543
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1.1e-08 Score=114.69 Aligned_cols=220 Identities=17% Similarity=0.213 Sum_probs=133.4
Q ss_pred cCCeEEEEEC--CCCeEEEEEEcC-CcEEEEEEcC--C-EEEEEE-CCeEEEEECCCCceeE--EEecCCCcccCCCCcc
Q 002778 59 SPTAVRFYSF--QSHCYEHVLRFR-SSVCMVRCSP--R-IVAVGL-ATQIYCFDALTLENKF--SVLTYPVPQLAGQGAV 129 (882)
Q Consensus 59 sp~tVrlWDl--kTG~~V~tLkf~-s~V~sV~~S~--r-lLAV~~-d~qI~IWDa~T~e~l~--tL~t~p~p~~~~~~~~ 129 (882)
.+++++||-+ ++...++.+.|. .+|...+|.+ . .++++. ..-.|.||+.+.+... .+.+...+
T Consensus 233 ~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~-------- 304 (514)
T KOG2055|consen 233 LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK-------- 304 (514)
T ss_pred CCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccc--------
Confidence 4688999965 566677777754 5788878765 3 555544 3458999998877432 22222211
Q ss_pred cccccceeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccc
Q 002778 130 GINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 207 (882)
Q Consensus 130 g~~~~~g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~ 207 (882)
....+.+++ .+||..++.-.| .+ | .. .++++..+
T Consensus 305 ----~~e~FeVShd~~fia~~G~~G~I------~l--L--------------------ha-kT~eli~s----------- 340 (514)
T KOG2055|consen 305 ----SMERFEVSHDSNFIAIAGNNGHI------HL--L--------------------HA-KTKELITS----------- 340 (514)
T ss_pred ----hhheeEecCCCCeEEEcccCceE------Ee--e--------------------hh-hhhhhhhe-----------
Confidence 134556666 788877652111 00 0 00 00111111
Q ss_pred cCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCC--eEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 208 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSP--ISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 208 l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~sp--IsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
+.-.|....+.++++++-+.+ .+.+|.|.+||+....++..|.-- +. =+.+|.|++|.+|||||..| .++||
T Consensus 341 ~KieG~v~~~~fsSdsk~l~~----~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~G-iVNIY 414 (514)
T KOG2055|consen 341 FKIEGVVSDFTFSSDSKELLA----SGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSG-IVNIY 414 (514)
T ss_pred eeeccEEeeEEEecCCcEEEE----EcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcc-eEEEe
Confidence 111222333444455555432 246789999999999999888732 22 25688899999999999876 69999
Q ss_pred ecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeC--CCeEEEEECC
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS--KGTCHVFVLS 349 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~--DGTVhIWdI~ 349 (882)
|...... +...+.+..+. ..+ ..|.+|.|++|++.||.+|. +.+++|--+.
T Consensus 415 d~~s~~~-----------s~~PkPik~~d-NLt-t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 415 DGNSCFA-----------STNPKPIKTVD-NLT-TAITSLQFNHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred ccchhhc-----------cCCCCchhhhh-hhh-eeeeeeeeCcchhhhhhhhhccccceEEEecc
Confidence 9754211 11223444432 122 24999999999999999985 5677775554
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1e-08 Score=110.82 Aligned_cols=185 Identities=19% Similarity=0.194 Sum_probs=114.9
Q ss_pred CCEEEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC--cEEEEeCC--CeEeccCCCCCCcc
Q 002778 90 PRIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQN 164 (882)
Q Consensus 90 ~rlLAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAyss~--~v~lwdtG~vs~q~ 164 (882)
..+|+++ .+..|.+||+. |+.+.++.+.... ..-.|++| |+||.++- .+.+|..
T Consensus 199 ~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~-------------n~~aavSP~GRFia~~gFTpDVkVwE~------- 257 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS-------------NYDAAVSPDGRFIAVSGFTPDVKVWEP------- 257 (420)
T ss_pred ceEEEEecCCCcEEEEecC-Cceeeeecccccc-------------ccceeeCCCCcEEEEecCCCCceEEEE-------
Confidence 3566665 46789999998 8999999875431 13467888 99998763 4677752
Q ss_pred CCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEEC
Q 002778 165 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 244 (882)
Q Consensus 165 lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl 244 (882)
.|.++...+-+... -.|.+|... ...++|++++...+ +.+.||+++|||+
T Consensus 258 -------------------~f~kdG~fqev~rv-f~LkGH~sa------V~~~aFsn~S~r~v----tvSkDG~wriwdt 307 (420)
T KOG2096|consen 258 -------------------IFTKDGTFQEVKRV-FSLKGHQSA------VLAAAFSNSSTRAV----TVSKDGKWRIWDT 307 (420)
T ss_pred -------------------EeccCcchhhhhhh-heeccchhh------eeeeeeCCCcceeE----EEecCCcEEEeec
Confidence 01111111101000 123333321 11233444344332 5689999999998
Q ss_pred CC-------CcEEEEec----c-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 245 VT-------RAIISQFK----A-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 245 ~s-------~~~v~~f~----a-H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
.- .+.++.+. + -..|+ .|+++|+|..||.+. |+.|++|...+ | ..+-.
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~--gs~l~~~~se~-------g----------~~~~~ 367 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSF--GSDLKVFASED-------G----------KDYPE 367 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeec--CCceEEEEccc-------C----------ccchh
Confidence 53 12333332 1 23355 799999999999776 67799999865 3 23333
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
+.+- +...|.+|+|++||+++|+++++ .++|+.
T Consensus 368 ~e~~-h~~~Is~is~~~~g~~~atcGdr-~vrv~~ 400 (420)
T KOG2096|consen 368 LEDI-HSTTISSISYSSDGKYIATCGDR-YVRVIR 400 (420)
T ss_pred HHHh-hcCceeeEEecCCCcEEeeecce-eeeeec
Confidence 4433 33469999999999999999855 678865
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=5e-08 Score=113.48 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=84.5
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
+.+|.|.-||+.+++.+..+..-.++|+++|.+|.++.|+.++.+| ++..+++.| + +..|+.
T Consensus 87 g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddG-vl~~~s~~p-------~----------~I~~~r 148 (691)
T KOG2048|consen 87 GLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDG-VLYDFSIGP-------D----------KITYKR 148 (691)
T ss_pred cCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCc-eEEEEecCC-------c----------eEEEEe
Confidence 4578999999999999999999999999999999999999999888 688888865 2 333432
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
.-+-..++|.+|+|+|++..||+||.||-|++||+....
T Consensus 149 ~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 149 SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ 187 (691)
T ss_pred ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence 222233689999999999999999999999999997653
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.97 E-value=6.8e-09 Score=114.16 Aligned_cols=113 Identities=17% Similarity=0.247 Sum_probs=85.6
Q ss_pred ccCCCceEEEEECCCCcE---EEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 002778 232 DMDNAGIVVVKDFVTRAI---ISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~---v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
+|+..+.|++|...++.- ..-|.+|+..|-.|++||.- ++|||||.||+ |+|||++..+ ..
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~--------------~~ 293 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGP--------------KK 293 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCC--------------cc
Confidence 567778899999988753 24577899999999999965 58999999876 9999996411 00
Q ss_pred cEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc---cccccccC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD---SGFQTLSS 362 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~---~~l~~H~~ 362 (882)
..+.. -.+++.|.-|+|+-+-.+||+|++|||++||||...... ..+.-|..
T Consensus 294 ~~~~~---kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 294 AAVST---KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred ceeEe---eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 12222 224467999999999889999999999999999876443 24566653
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=5.3e-09 Score=117.39 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=83.9
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
..|.+.+|.+.+|..+..+.+|-.+|++|.|+-||.+|+|||.||. |.+|++..-.+. +...+...++.+.
T Consensus 101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~-V~vW~l~~lv~a--------~~~~~~~p~~~f~ 171 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGA-VLVWLLTDLVSA--------DNDHSVKPLHIFS 171 (476)
T ss_pred ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCcc-EEEEEEEeeccc--------ccCCCccceeeec
Confidence 5688999999999999999999999999999999999999999886 889998542111 1111334566663
Q ss_pred ecccCCcEEEEEEccC--CCEEEEEeCCCeEEEEECCCC
Q 002778 315 RGITSATIQDICFSHY--SQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 315 RG~t~a~I~sLaFSPD--g~~LAsgS~DGTVhIWdI~~~ 351 (882)
+|+ -.|+++-..+- ..+|.++|.|.||+|||+...
T Consensus 172 -~Ht-lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 172 -DHT-LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred -cCc-ceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 343 46888876654 578999999999999999865
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.97 E-value=1.2e-08 Score=114.92 Aligned_cols=122 Identities=15% Similarity=0.196 Sum_probs=90.9
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++..|.|+|||+....+.+.++.|++.|+++.++-...+||+.+..| .|.|..+.+ + ....
T Consensus 96 sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG-diiih~~~t-------~----------~~tt 157 (673)
T KOG4378|consen 96 SGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG-DIIIHGTKT-------K----------QKTT 157 (673)
T ss_pred ccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC-cEEEEeccc-------C----------cccc
Confidence 467889999999998778888999999999999999999999999855 477888864 2 1222
Q ss_pred EEEecccCCcEEEEEEccCCCE-EEEEeCCCeEEEEECCCCCCcc-ccccccCCCCCCcccCC
Q 002778 312 KLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~-LAsgS~DGTVhIWdI~~~gg~~-~l~~H~~~~~~~~~sp~ 372 (882)
+|.-+ ....|.-|.|||-.++ |.++|++|+|||||++-..-.. ....|.++..+..++|.
T Consensus 158 ~f~~~-sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 158 TFTID-SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPS 219 (673)
T ss_pred ceecC-CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCC
Confidence 23212 1235778999999886 5568999999999997543332 34677766666666654
No 142
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.94 E-value=8.7e-09 Score=109.26 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=54.8
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeC
Q 002778 260 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 339 (882)
Q Consensus 260 IsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~ 339 (882)
|..+.+-||++.||||+.|++ ||||.-++ + ..+..|. .+.+.|++||||||...+|++|.
T Consensus 254 v~gvrIRpD~KIlATAGWD~R-iRVyswrt-------l----------~pLAVLk--yHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHR-IRVYSWRT-------L----------NPLAVLK--YHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred ccceEEccCCcEEeecccCCc-EEEEEecc-------C----------Cchhhhh--hhhcceeEEEeCCCCchhhhccC
Confidence 444556699999999999876 99999864 2 2344432 23467999999999999999999
Q ss_pred CCeEEEEEC
Q 002778 340 KGTCHVFVL 348 (882)
Q Consensus 340 DGTVhIWdI 348 (882)
|++|-+|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999987
No 143
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2e-09 Score=130.57 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=78.5
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCC--CeEEEEECCCC-CEEEEEEcCCC--EEEEEecCCCcccCCCCCCccccCCcc
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTS--PISALCFDPSG-TLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~s--pIsaLaFSPdG-tlLATAS~dGt--~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
++.+|.+.|||++..+.+..|.-|.. .++.|+|+|++ +.|++|+.|++ +|.+||++-. .
T Consensus 180 ~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a--------------s-- 243 (1049)
T KOG0307|consen 180 GSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA--------------S-- 243 (1049)
T ss_pred cCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc--------------C--
Confidence 45678999999998888877776644 47899999988 57777777654 6999998631 1
Q ss_pred cEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECCCCC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~~~g 352 (882)
..+.++ +||.. -|.+|+|++.+ ++|+++..|+.|.+|+.++..
T Consensus 244 sP~k~~-~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 244 SPLKIL-EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred Cchhhh-ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 133444 46554 48999999877 899999999999999998743
No 144
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.91 E-value=5e-07 Score=98.85 Aligned_cols=262 Identities=13% Similarity=0.149 Sum_probs=137.6
Q ss_pred cCCeEEEEECCC-Ce--EEEEEEcCCcEEEEEEcC--CEEEEEE--CCeEEEEECC-CCceeEEEecCCCcccCCCCccc
Q 002778 59 SPTAVRFYSFQS-HC--YEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDAL-TLENKFSVLTYPVPQLAGQGAVG 130 (882)
Q Consensus 59 sp~tVrlWDlkT-G~--~V~tLkf~s~V~sV~~S~--rlLAV~~--d~qI~IWDa~-T~e~l~tL~t~p~p~~~~~~~~g 130 (882)
.++.|++||+.+ |+ .+.++...+....+++++ ++|.++. ++.|.+|++. +++ +..+...+.+ +
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~~~~~~--------~ 80 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAAESPLP--------G 80 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEeeeecCC--------C
Confidence 467899999974 44 556666656677788875 6776654 4679999986 333 2222222211 0
Q ss_pred ccccceeeEEcC--cEEEEe---CCCeEeccC---CCCC--CccCCC-CC-CCCCcCCCCCccEE-Eeeccchh--hhhc
Q 002778 131 INVGYGPMAVGP--RWLAYA---SNTLLLSNS---GRLS--PQNLTP-SG-VSPSTSPGGSSLVA-RYAMEHSK--QFAA 195 (882)
Q Consensus 131 ~~~~~g~lAlsp--R~LAys---s~~v~lwdt---G~vs--~q~lt~-~~-vs~s~SP~~GslVA-~~A~essk--~la~ 195 (882)
....++++| ++|..+ ++.+.+|+. |.+. .+.+.. +. -....+|++..+.+ .+..+... .+..
T Consensus 81 ---~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 81 ---SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred ---CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 113467776 556533 346777753 2111 111111 00 11224555544422 11111100 0000
Q ss_pred cccccccccccc--cCCCCC-CCCccCCCccccccccccccCCCceEEEEECCC--C--cEEEEeccC------CCCeEE
Q 002778 196 GLSKTLSKYCQE--LLPDGS-SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--R--AIISQFKAH------TSPISA 262 (882)
Q Consensus 196 GliktLs~~~~~--l~pdgs-~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s--~--~~v~~f~aH------~spIsa 262 (882)
. +.+...... -.+.+. ...+.++++++.+.++ ...+++|.+||+.. + +.+..+..+ ......
T Consensus 158 ~--g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~---~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 158 D--GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV---NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred C--CcccccCCCceecCCCCCCceEEECCCCCEEEEE---ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 0 011100000 011121 1123344555654332 24479999999973 3 234444322 112346
Q ss_pred EEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeC-CC
Q 002778 263 LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KG 341 (882)
Q Consensus 263 LaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~-DG 341 (882)
++|+|+|++|+++......|.||++... +. ....+.....| .....++|+|||++|+++.. ++
T Consensus 233 i~~~pdg~~lyv~~~~~~~I~v~~i~~~------~~-------~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~ 296 (330)
T PRK11028 233 IHITPDGRHLYACDRTASLISVFSVSED------GS-------VLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSH 296 (330)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEeCC------CC-------eEEEeEEEecc---ccCCceEECCCCCEEEEEEccCC
Confidence 9999999999998765667999999542 10 00112222222 23457899999999998875 89
Q ss_pred eEEEEECCCCCC
Q 002778 342 TCHVFVLSPFGG 353 (882)
Q Consensus 342 TVhIWdI~~~gg 353 (882)
+|.||+++...+
T Consensus 297 ~v~v~~~~~~~g 308 (330)
T PRK11028 297 HISVYEIDGETG 308 (330)
T ss_pred cEEEEEEcCCCC
Confidence 999999975443
No 145
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.90 E-value=1.3e-07 Score=107.23 Aligned_cols=95 Identities=19% Similarity=0.285 Sum_probs=74.8
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
|...|.-.|.|.++...+..-.. ..+|++++|+|+|.+||.||.|+. |.||.+... | ..+.+
T Consensus 424 Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~------g----------~~y~r 485 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSAN------G----------RKYSR 485 (626)
T ss_pred eeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe-EEEEEECCC------C----------cEEEE
Confidence 45678999999998554444334 899999999999999999999765 999999542 3 23223
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEE
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 346 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIW 346 (882)
. +-.+.+.|+.|.||+|+++|.+-|-|-.+--|
T Consensus 486 ~-~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 486 V-GKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred e-eeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 2 22233789999999999999999999999999
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.89 E-value=5.5e-08 Score=105.75 Aligned_cols=99 Identities=19% Similarity=0.318 Sum_probs=84.3
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
+.-|.|+|.|..++++...+++|-..|+.|.|.|+- ++|++||. ++.||+|++... .++..
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk-D~svRlwnI~~~-----------------~Cv~V 173 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK-DHSVRLWNIQTD-----------------VCVAV 173 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC-CceEEEEeccCC-----------------eEEEE
Confidence 467999999999999999999999999999999986 68889998 677999999752 34444
Q ss_pred E--EecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 313 L--HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 313 L--~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
| ..|| ...|.+|.|++||.+||+++.|.++.+|+|+..
T Consensus 174 fGG~egH-rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 174 FGGVEGH-RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred ecccccc-cCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 4 2343 357999999999999999999999999999843
No 147
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.89 E-value=5.8e-09 Score=114.27 Aligned_cols=232 Identities=17% Similarity=0.144 Sum_probs=131.1
Q ss_pred EEEEE-cCCcEEEEEEcCCE---EEEE-ECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC-cEEEE
Q 002778 74 EHVLR-FRSSVCMVRCSPRI---VAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAY 147 (882)
Q Consensus 74 V~tLk-f~s~V~sV~~S~rl---LAV~-~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp-R~LAy 147 (882)
+..|. |++.|+.++=++.. +|+| .|++|+|||+.+.+++.++..|..+. ..+++.- ..+-.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V-------------~Gi~v~~~~~~tv 125 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLV-------------RGICVTQTSFFTV 125 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCce-------------eeEEecccceEEe
Confidence 34444 78889988888743 5554 58999999999999999998776431 2233333 33333
Q ss_pred eC-CCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEee-ccchhhhhcc----ccc-ccccccccc-CCCCCCCCccC
Q 002778 148 AS-NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA-MEHSKQFAAG----LSK-TLSKYCQEL-LPDGSSSPVSP 219 (882)
Q Consensus 148 ss-~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A-~essk~la~G----lik-tLs~~~~~l-~pdgs~s~~S~ 219 (882)
++ .+++.|.... .|.+.-. .++.+...-. ...+.-...| +|+ ....-...+ +...+...+.+
T Consensus 126 gdDKtvK~wk~~~-~p~~til---------g~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 126 GDDKTVKQWKIDG-PPLHTIL---------GKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred cCCcceeeeeccC-Ccceeee---------ccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEec
Confidence 32 4688886311 0110000 0000000000 0000000111 120 000000000 00011123344
Q ss_pred CCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCC
Q 002778 220 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 299 (882)
Q Consensus 220 ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~ 299 (882)
|+....+ ++ ++..|+.|.|||+....+++.+.- +..-+.|+|+|.+--+++|+. ++++..||+..- .
T Consensus 196 NpvETsI-La--s~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E-D~nlY~~DmR~l-----~--- 262 (433)
T KOG0268|consen 196 NPVETSI-LA--SCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE-DHNLYTYDMRNL-----S--- 262 (433)
T ss_pred CCCcchh-ee--eeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc-cccceehhhhhh-----c---
Confidence 4432221 22 456899999999999877655432 234467999997777777776 677999998531 0
Q ss_pred ccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 300 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 300 ~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
..+ ..++|+..| |.+|+|||.|+-+++||-|.||+||.++..
T Consensus 263 --------~p~-~v~~dhvsA-V~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 263 --------RPL-NVHKDHVSA-VMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred --------ccc-hhhccccee-EEEeccCCCcchhccccccceEEEeecCCC
Confidence 112 223577665 999999999999999999999999999854
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.88 E-value=1.3e-08 Score=114.87 Aligned_cols=211 Identities=16% Similarity=0.180 Sum_probs=132.8
Q ss_pred CeEEEEECCCCeEEEEEEcCC---cEEEEEEcC--CEEE-EEECCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 61 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLkf~s---~V~sV~~S~--rlLA-V~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+|.||||.+-...-..+..+ .++++++++ ++.. .+.++.|.|||+.+-..++++.+|+. +
T Consensus 487 stlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-------------G 553 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-------------G 553 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-------------C
Confidence 689999998766544444443 478888887 4444 45688999999999889999988876 1
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
...+.+ +.+..+||..| + ++ .| +.+.+..+ +++..|- |....-+
T Consensus 554 ascIdi-------s~dGtklWTGG-l----------------Dn--tv------RcWDlreg--rqlqqhd--F~SQIfS 597 (705)
T KOG0639|consen 554 ASCIDI-------SKDGTKLWTGG-L----------------DN--TV------RCWDLREG--RQLQQHD--FSSQIFS 597 (705)
T ss_pred ceeEEe-------cCCCceeecCC-C----------------cc--ce------eehhhhhh--hhhhhhh--hhhhhee
Confidence 233333 33344455422 1 00 00 01111111 0000000 0000001
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccC
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 294 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~ 294 (882)
...+++.+|-. .|-.++.|.|-... +....++..|.+-|.+|.|.+-|+++|+.+. ++.++.|++ |.
T Consensus 598 Lg~cP~~dWla------vGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGk-DnlLnawrt-Py---- 664 (705)
T KOG0639|consen 598 LGYCPTGDWLA------VGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRT-PY---- 664 (705)
T ss_pred cccCCCcccee------eecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCc-hhhhhhccC-cc----
Confidence 11234444432 23456667776653 4456778889999999999999999999998 457999998 42
Q ss_pred CCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 295 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 295 ~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
| ..++... ....|.+...|-|.+||++||-|....||.+
T Consensus 665 --G----------asiFqsk---E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 665 --G----------ASIFQSK---ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred --c----------cceeecc---ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4 2455543 2357999999999999999999998888876
No 149
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=2.5e-07 Score=96.54 Aligned_cols=98 Identities=20% Similarity=0.300 Sum_probs=80.7
Q ss_pred ccCCCceEEEEECCCCcEEEEecc--C-----CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccC
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKA--H-----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 304 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~a--H-----~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~s 304 (882)
+|++|.+|+.||+.-..++.++.. | .+.|.+++.+|+|++||++-.|. ...+||+.- |
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds-sc~lydirg-------~------- 263 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS-SCMLYDIRG-------G------- 263 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC-ceEEEEeeC-------C-------
Confidence 467899999999998888877642 3 35799999999999999998855 478999962 2
Q ss_pred CcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 305 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 305 ss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
+.++.++ -+.+.|.++.|||-..|+.++|-|..|+|=|++
T Consensus 264 ---r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 264 ---RMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred ---ceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 4566654 245789999999999999999999999998885
No 150
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.87 E-value=4.7e-07 Score=94.23 Aligned_cols=99 Identities=27% Similarity=0.402 Sum_probs=76.8
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
.++.+++||+..+..+..+..|...|.+++|+|+|. ++++++.++. |++||... + ..+...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~-i~~wd~~~-------~----------~~~~~~ 237 (466)
T COG2319 176 LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT-IRLWDLST-------G----------KLLRST 237 (466)
T ss_pred CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCc-EEEEECCC-------C----------cEEeee
Confidence 478999999999888999999999999999999998 6666577665 78998742 2 233312
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
..++... . -..|++++.++++++.|+++++|++.....
T Consensus 238 ~~~~~~~-~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 238 LSGHSDS-V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred cCCCCcc-e-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 3454432 2 228999999999999999999999986654
No 151
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.86 E-value=2.6e-08 Score=107.22 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=115.0
Q ss_pred ccCCeEEEEECCCCeEEEEEEcCCcEEEEEEcCCEEEEEEC-CeEEEEECCCCceeEEEecCCCcccCCCCcccccccce
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 136 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~rlLAV~~d-~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g 136 (882)
+.++|||+||++....+.+++.+..||+..+-..+++|+.. ..|.+|++.....++.....|.
T Consensus 134 SWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpL---------------- 197 (347)
T KOG0647|consen 134 SWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPL---------------- 197 (347)
T ss_pred ccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcc----------------
Confidence 47899999999999999999999999999988878887764 5699999977654433222222
Q ss_pred eeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCC
Q 002778 137 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 216 (882)
Q Consensus 137 ~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~ 216 (882)
.+--|.||...+. .+
T Consensus 198 --k~Q~R~va~f~d~--------------------------~~------------------------------------- 212 (347)
T KOG0647|consen 198 --KWQTRCVACFQDK--------------------------DG------------------------------------- 212 (347)
T ss_pred --cceeeEEEEEecC--------------------------Cc-------------------------------------
Confidence 1111333322110 00
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCC--cEEEEeccCCC---------CeEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 217 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 217 ~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~--~~v~~f~aH~s---------pIsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
. + -|+..|.|-|..+..+ +.--+|++|.. +|+.|+|+|.-..|||++.||+ +..|
T Consensus 213 -------~--a----lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FW 278 (347)
T KOG0647|consen 213 -------F--A----LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFW 278 (347)
T ss_pred -------e--E----eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEe
Confidence 0 0 1345667777766654 33456777863 5788999999889999999886 8999
Q ss_pred ecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEe
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 338 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS 338 (882)
|-.. ..+|.... ..+.+|.+.+|+.+|.++|-+.
T Consensus 279 Dkda-----------------r~kLk~s~--~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 279 DKDA-----------------RTKLKTSE--THPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cchh-----------------hhhhhccC--cCCCccceeEecCCCCEEEEEe
Confidence 9742 12333322 2456899999999999988763
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=4.2e-08 Score=106.15 Aligned_cols=245 Identities=17% Similarity=0.133 Sum_probs=148.9
Q ss_pred EEEEEEcCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC--cEEEE
Q 002778 73 YEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAY 147 (882)
Q Consensus 73 ~V~tLkf~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAy 147 (882)
..++|++.. ..+++|++ .+||+|. +++|.|||..|...-+.+..|-.| ...+++++ |.|..
T Consensus 17 l~~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p-------------i~sl~WS~dgr~Llt 82 (405)
T KOG1273|consen 17 LTHTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP-------------ITSLCWSRDGRKLLT 82 (405)
T ss_pred hceeccCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccc-------------eeEEEecCCCCEeee
Confidence 456677666 67788986 8999975 688999999998866666666554 35678887 77766
Q ss_pred eC--CCeEeccC--CCCCCcc--CCCCCCCCCcCCCCCccE-EEeeccchhhhhccccccccccccccCCC---CC-CCC
Q 002778 148 AS--NTLLLSNS--GRLSPQN--LTPSGVSPSTSPGGSSLV-ARYAMEHSKQFAAGLSKTLSKYCQELLPD---GS-SSP 216 (882)
Q Consensus 148 ss--~~v~lwdt--G~vs~q~--lt~~~vs~s~SP~~GslV-A~~A~essk~la~GliktLs~~~~~l~pd---gs-~s~ 216 (882)
++ ..+.+||. |.. .+. +..|.-.....|.+...+ |....+... + -.++.....++|. +. ++.
T Consensus 83 sS~D~si~lwDl~~gs~-l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~-v-----i~~s~~~h~~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSP-LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPV-V-----IDFSDPKHSVLPKDDDGDLNSS 155 (405)
T ss_pred ecCCceeEEEeccCCCc-eeEEEccCccceeeeccccCCeEEEEEecCCcE-E-----EEecCCceeeccCCCccccccc
Confidence 64 47899985 321 111 112222222233333222 111111110 0 1122111112221 11 111
Q ss_pred ---ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc
Q 002778 217 ---VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 292 (882)
Q Consensus 217 ---~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~-spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~ 292 (882)
..++..++++. +|...|.+.|+|+.+.++++.|+--+ ..|..|-|+..|+.|++-.. +++||+|++..--.
T Consensus 156 as~~~fdr~g~yIi----tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts-DRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 156 ASHGVFDRRGKYII----TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS-DRVIRTYEISDIDD 230 (405)
T ss_pred cccccccCCCCEEE----EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC-CceEEEEehhhhcc
Confidence 12555556543 56789999999999999999998766 88999999999999999887 56899999863100
Q ss_pred cCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC-CeEEEEECCCC
Q 002778 293 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPF 351 (882)
Q Consensus 293 ~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D-GTVhIWdI~~~ 351 (882)
.+..| .....+++.--.....-.+++||.||.||+++|.+ ..+.||.-..+
T Consensus 231 ~~r~~--------e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 231 EGRDG--------EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred cCccC--------CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc
Confidence 00001 11122232211112345789999999999998865 56999987653
No 153
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=6.9e-08 Score=115.30 Aligned_cols=176 Identities=17% Similarity=0.205 Sum_probs=123.5
Q ss_pred ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecC-CCcccCCCCccccc
Q 002778 58 NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTY-PVPQLAGQGAVGIN 132 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~-p~p~~~~~~~~g~~ 132 (882)
..+..|++-++.+....+.++ |..+|..|.+++ .+|||+. +++|+|||+.++.+.+++..- +.. .+.
T Consensus 115 sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n-----~~~--- 186 (933)
T KOG1274|consen 115 SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN-----EFI--- 186 (933)
T ss_pred cCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccc-----ccc---
Confidence 367999999999998888887 999999999997 5888865 789999999999998888642 110 000
Q ss_pred ccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 133 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 133 ~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
...++ .-+|+ +|.+|.++
T Consensus 187 -~s~i~----~~~aW---------------------------~Pk~g~la------------------------------ 204 (933)
T KOG1274|consen 187 -LSRIC----TRLAW---------------------------HPKGGTLA------------------------------ 204 (933)
T ss_pred -cccee----eeeee---------------------------cCCCCeEE------------------------------
Confidence 00000 01111 23333221
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCC
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 290 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~a--H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~ 290 (882)
+ ...++.|++|+..+......++. |.+.+..++|||.|++||+++.+|. |-|||+.+.
T Consensus 205 ---------------~----~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~-I~vWnv~t~ 264 (933)
T KOG1274|consen 205 ---------------V----PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ-ILVWNVDTH 264 (933)
T ss_pred ---------------e----eccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCc-EEEEecccc
Confidence 1 13578999999998877766653 4445999999999999999999886 889999631
Q ss_pred cccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEE
Q 002778 291 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 346 (882)
Q Consensus 291 ~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIW 346 (882)
..++++ ..|++++|-|+..-|-.-...|+.-+|
T Consensus 265 ------------------~~~~~~-----~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 265 ------------------ERHEFK-----RAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ------------------hhcccc-----ceeEEEecCCCCCeeEEEeeccccccC
Confidence 112221 358999999998877666666655544
No 154
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.83 E-value=9.9e-08 Score=107.22 Aligned_cols=183 Identities=18% Similarity=0.251 Sum_probs=123.4
Q ss_pred cccccc-----ccCccCCCCCcccccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEE-ECCeEEEEECCCC
Q 002778 39 SHLGGV-----RDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTL 109 (882)
Q Consensus 39 ~~~~~v-----~~~~~~~~~~~~~~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~-~d~qI~IWDa~T~ 109 (882)
+|.+.| +.|.++-+.. ..+++|++|++..-.++.++- |++.|.+|.... +.+.|+ -|.++++|++..-
T Consensus 242 ghr~~V~~L~fr~gt~~lys~---s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee 318 (479)
T KOG0299|consen 242 GHRGAVSSLAFRKGTSELYSA---SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE 318 (479)
T ss_pred ccccceeeeeeecCccceeee---ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc
Confidence 555654 6677665533 468999999999988888874 999999998754 455565 4788999998432
Q ss_pred ceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccc
Q 002778 110 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 189 (882)
Q Consensus 110 e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~es 189 (882)
.. ..+.++.. ++..+||-++.-
T Consensus 319 sq-lifrg~~~--------------------sidcv~~In~~H------------------------------------- 340 (479)
T KOG0299|consen 319 SQ-LIFRGGEG--------------------SIDCVAFINDEH------------------------------------- 340 (479)
T ss_pred ce-eeeeCCCC--------------------CeeeEEEecccc-------------------------------------
Confidence 11 11211110 011233322100
Q ss_pred hhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec-cCC-----------
Q 002778 190 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHT----------- 257 (882)
Q Consensus 190 sk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~-aH~----------- 257 (882)
+. +|+.+|.|-+|++...+++.+.+ ||.
T Consensus 341 --------------------------------------fv--sGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~ 380 (479)
T KOG0299|consen 341 --------------------------------------FV--SGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGN 380 (479)
T ss_pred --------------------------------------ee--eccCCceEEEeeecccCceeEeeccccccCCccccccc
Confidence 00 45678999999998888776554 441
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEE
Q 002778 258 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 337 (882)
Q Consensus 258 spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsg 337 (882)
..|++|+.-|...++||+|.+|. +|+|.+.+.. -....++.+. . ..-|++|+|+++|++|++|
T Consensus 381 ~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~-------------r~i~~l~~ls--~-~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 381 FWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGL-------------RAINLLYSLS--L-VGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cceeeeEecccCceEEecCCCCc-eEEEEecCCc-------------cccceeeecc--c-ccEEEEEEEccCCCEEEEe
Confidence 27899999999999999999885 9999997521 0123555553 1 2469999999999988888
Q ss_pred eC
Q 002778 338 SS 339 (882)
Q Consensus 338 S~ 339 (882)
--
T Consensus 444 iG 445 (479)
T KOG0299|consen 444 IG 445 (479)
T ss_pred cc
Confidence 43
No 155
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=8.7e-07 Score=101.70 Aligned_cols=230 Identities=16% Similarity=0.084 Sum_probs=125.7
Q ss_pred CCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEE-E---CCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG-L---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~-~---d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
...|.+||...+...........+.+.++++ +.||.. . ..+|++||+.+++.. .+...+.
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~------------- 243 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR------------- 243 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCC-------------
Confidence 3478899986554433334666789999987 566643 2 246999999887642 2322221
Q ss_pred cceeeEEcC--cEEEEeCC-----CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 134 GYGPMAVGP--RWLAYASN-----TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 134 ~~g~lAlsp--R~LAyss~-----~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
.....+++| +.|+|... .+.+|+...-....++. .
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~------------------------------------~-- 285 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD------------------------------------G-- 285 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC------------------------------------C--
Confidence 012457777 78887632 23444421000011110 0
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCce--EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI--VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNI 282 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~--V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~I 282 (882)
.........+++++.+++.. ...|. |.++|+.++.. ..+..+.......+|+|||++||.++.++ ..|
T Consensus 286 ----~~~~~~~~wSPDG~~I~f~s---~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 286 ----RSNNTEPTWFPDSQNLAYTS---DQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred ----CCCcCceEECCCCCEEEEEe---CCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceE
Confidence 00011122333445444321 22343 44457766653 34444444566789999999998876543 347
Q ss_pred EEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCe---EEEEECCCCCCcccccc
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGT---CHVFVLSPFGGDSGFQT 359 (882)
Q Consensus 283 rVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGT---VhIWdI~~~gg~~~l~~ 359 (882)
.+||+.. | ....+..+ ....+.+|||||++|+.++.++. +.+++++ ++....+.+
T Consensus 358 ~~~dl~~-------g-----------~~~~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~ 415 (429)
T PRK03629 358 AKQDLAT-------G-----------GVQVLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPA 415 (429)
T ss_pred EEEECCC-------C-----------CeEEeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECcc
Confidence 7788743 2 12233222 12356889999999999998875 4555553 334455666
Q ss_pred ccCCCCCCcccC
Q 002778 360 LSSQGGDPYLFP 371 (882)
Q Consensus 360 H~~~~~~~~~sp 371 (882)
|...+..+.++|
T Consensus 416 ~~~~~~~p~Wsp 427 (429)
T PRK03629 416 TDGQVKFPAWSP 427 (429)
T ss_pred CCCCcCCcccCC
Confidence 654444444433
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.2e-08 Score=124.01 Aligned_cols=204 Identities=16% Similarity=0.165 Sum_probs=143.8
Q ss_pred cccccccccCccCCCCCcccc---cCCeEEEEECCCCeEEEEE---EcCCcEEEEEEcC---CEEEEEEC-CeEEEEECC
Q 002778 38 RSHLGGVRDGMMDSQSGNCVN---SPTAVRFYSFQSHCYEHVL---RFRSSVCMVRCSP---RIVAVGLA-TQIYCFDAL 107 (882)
Q Consensus 38 ~~~~~~v~~~~~~~~~~~~~~---sp~tVrlWDlkTG~~V~tL---kf~s~V~sV~~S~---rlLAV~~d-~qI~IWDa~ 107 (882)
.-|.|.|++--.+...+|.+. .++.|.|||++.-+.-.++ .+.+.|..|++|+ ++||.+.. +++.|||++
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr 192 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR 192 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence 467788888777878787774 4589999999876655555 2678899999998 57888765 589999998
Q ss_pred CCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeec
Q 002778 108 TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 187 (882)
Q Consensus 108 T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~ 187 (882)
..+.+..+..++. .+.+ .-|++.++ +.+.+
T Consensus 193 ~~~pii~ls~~~~----------------~~~~--S~l~WhP~---------------------------~aTql----- 222 (1049)
T KOG0307|consen 193 KKKPIIKLSDTPG----------------RMHC--SVLAWHPD---------------------------HATQL----- 222 (1049)
T ss_pred CCCcccccccCCC----------------ccce--eeeeeCCC---------------------------Cceee-----
Confidence 7665544432221 0111 11333221 00000
Q ss_pred cchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEEC
Q 002778 188 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFD 266 (882)
Q Consensus 188 essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFS 266 (882)
+ ++ +.-+..-.|++||++.- ..++++++|...|.+|.|.
T Consensus 223 ------~---------------------------------~A-s~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc 262 (1049)
T KOG0307|consen 223 ------L---------------------------------VA-SGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC 262 (1049)
T ss_pred ------e---------------------------------ee-cCCCCCceeEeecccccCCchhhhcccccceeeeccC
Confidence 0 00 01133457999998753 4678889999999999999
Q ss_pred CCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCC-EEEEEeCCCeEE
Q 002778 267 PSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCH 344 (882)
Q Consensus 267 PdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~-~LAsgS~DGTVh 344 (882)
+.+ ++|+|++.|++ |.+|+..+ | ..++++-+ ....+.++.|+|-.- .+|++|.||+|-
T Consensus 263 ~~D~~lllSsgkD~~-ii~wN~~t-------g----------Evl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 263 PQDPRLLLSSGKDNR-IICWNPNT-------G----------EVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CCCchhhhcccCCCC-eeEecCCC-------c----------eEeeecCC--CCcceeeeeecCCCcchhhhheecccee
Confidence 988 88899998776 77999865 3 47788754 235799999999765 889999999999
Q ss_pred EEECCCC
Q 002778 345 VFVLSPF 351 (882)
Q Consensus 345 IWdI~~~ 351 (882)
||.+...
T Consensus 323 I~sl~~~ 329 (1049)
T KOG0307|consen 323 IYSLQGT 329 (1049)
T ss_pred eeeeecC
Confidence 9999754
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=1.8e-08 Score=108.89 Aligned_cols=137 Identities=19% Similarity=0.220 Sum_probs=88.6
Q ss_pred CCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCC
Q 002778 219 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 298 (882)
Q Consensus 219 ~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~ 298 (882)
|+..+..++ .|..+|.|.|||+.+..+-..|.||..||.+|+||+||++|+|+|.| ..|.+||+.......--.-
T Consensus 31 Fs~~G~~lA----vGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D-~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 31 FSRWGDYLA----VGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRD-WSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred eccCcceee----eeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCC-ceeEEEeccCCCceeEEEc
Confidence 344444444 46889999999999999889999999999999999999999999994 5699999964200000000
Q ss_pred CccccCCc----c--cEE----------EEEEeccc-----------CCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 299 HKYDWNSS----H--VHL----------YKLHRGIT-----------SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 299 ~~~d~sss----~--~~l----------~~L~RG~t-----------~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.+.-|... . ..+ -.+.-+.+ +..-....|.+-|++|.+|..+|.++|++.++.
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~ 185 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL 185 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence 00111110 0 000 00100000 000112247778999999999999999999988
Q ss_pred CCccccccc
Q 002778 352 GGDSGFQTL 360 (882)
Q Consensus 352 gg~~~l~~H 360 (882)
.+...++--
T Consensus 186 e~vas~rit 194 (405)
T KOG1273|consen 186 ECVASFRIT 194 (405)
T ss_pred eeeeeeeec
Confidence 777665543
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.9e-07 Score=99.63 Aligned_cols=107 Identities=15% Similarity=0.277 Sum_probs=76.0
Q ss_pred CceEEEEECCCC----cEEEEeccCCCCeEEEEECCC-C---CEEEEEEcCCCEEEEEecCCCccc-----CCCCCCccc
Q 002778 236 AGIVVVKDFVTR----AIISQFKAHTSPISALCFDPS-G---TLLVTASVYGNNINIFRIMPSCMR-----SGSGNHKYD 302 (882)
Q Consensus 236 dG~V~VWDl~s~----~~v~~f~aH~spIsaLaFSPd-G---tlLATAS~dGt~IrVWdi~p~~~~-----~~sG~~~~d 302 (882)
-+.+.||..... ..+..+..|++||..|+|.|+ | .+||+|+.|| |+||.+...++. ...+....+
T Consensus 198 ~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~ 275 (361)
T KOG2445|consen 198 LNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTD 275 (361)
T ss_pred ccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccc
Confidence 457888876543 256788899999999999996 3 4899999987 899999742110 000000001
Q ss_pred cCCcccEEEEEE-ecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 303 WNSSHVHLYKLH-RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 303 ~sss~~~l~~L~-RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
-.+.++. -+.+++.|+.+.|.--|..|+++++||+||+|..+
T Consensus 276 -----l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 276 -----LPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred -----cceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 1122221 24566799999999999999999999999999864
No 159
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=7.5e-08 Score=107.03 Aligned_cols=99 Identities=15% Similarity=0.236 Sum_probs=78.5
Q ss_pred CceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 236 AGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
+-.+.+||+.+|.....+. +|...+.+.+|.|||..+++||.|++ |.-||+. |. .++..
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~-i~~wdlD--------gn----------~~~~W- 349 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRT-IIMWDLD--------GN----------ILGNW- 349 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCc-EEEecCC--------cc----------hhhcc-
Confidence 4458999999998776664 35678999999999999999999876 7899984 31 22221
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+|.....|++|+.++||+++.+...|..|++|+.++.-..
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR 389 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence 3444457999999999999999999999999999876544
No 160
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=3e-07 Score=99.54 Aligned_cols=97 Identities=16% Similarity=0.264 Sum_probs=77.8
Q ss_pred cCCCceEEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 233 MDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 233 gs~dG~V~VWDl~s-~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
.+.|-+.++||+.. -..+..|++|++.|+++.|+-+. .++++|. +.+|+|||+..- . ..+.
T Consensus 332 sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD-DrTvKvWdLrNM------R----------splA 393 (481)
T KOG0300|consen 332 SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD-DRTVKVWDLRNM------R----------SPLA 393 (481)
T ss_pred eccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC-CceEEEeeeccc------c----------Ccce
Confidence 45688999999973 35688999999999999999876 4778887 456999999642 1 2456
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
+++ +...+.-|+.|.-+..||.--+..-|+|||++-
T Consensus 394 TIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 394 TIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred eee---cCCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 664 345789999999889999999999999999973
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.76 E-value=1.6e-07 Score=105.21 Aligned_cols=100 Identities=14% Similarity=0.233 Sum_probs=72.9
Q ss_pred ccCCCceEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 232 DMDNAGIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v-~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
+|+.||+|+|.|.+..... ..++ -.+.|-.++|+|.....+-++.++.+++-||++.. | ..+
T Consensus 304 sGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~------~----------~~v 366 (463)
T KOG0270|consen 304 SGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP------G----------KPV 366 (463)
T ss_pred eccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCC------C----------Cce
Confidence 4578999999999842211 1222 24678899999988766666655556999999642 2 467
Q ss_pred EEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECCC
Q 002778 311 YKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~~ 350 (882)
+.+.- +...|.+|+++..- ..|+++|.|++|+||++..
T Consensus 367 wt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 367 WTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred eEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 77752 45689999999765 4688899999999999964
No 162
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=5.7e-08 Score=102.32 Aligned_cols=117 Identities=19% Similarity=0.361 Sum_probs=90.0
Q ss_pred ccCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECC--CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 232 DMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~---~~v~~f~aH~spIsaLaFSP--dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
+++.|++|+|+...+. +.+.+|++|.+||.-++|-. -|++||++|.||+ +.||+-.. | .|+.
T Consensus 28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk-VIiWke~~-------g----~w~k- 94 (299)
T KOG1332|consen 28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK-VIIWKEEN-------G----RWTK- 94 (299)
T ss_pred eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-EEEEecCC-------C----chhh-
Confidence 5678999999999764 46889999999999999977 8999999999887 56999742 2 3432
Q ss_pred ccEEEEEEecccCCcEEEEEEccC--CCEEEEEeCCCeEEEEECCCCCCccc---cccccCCCCC
Q 002778 307 HVHLYKLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFVLSPFGGDSG---FQTLSSQGGD 366 (882)
Q Consensus 307 ~~~l~~L~RG~t~a~I~sLaFSPD--g~~LAsgS~DGTVhIWdI~~~gg~~~---l~~H~~~~~~ 366 (882)
.++ +..+.+.|++|+|.|. |-.||++|+||+|.|++....|+-.+ ...|...+..
T Consensus 95 ---~~e--~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns 154 (299)
T KOG1332|consen 95 ---AYE--HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS 154 (299)
T ss_pred ---hhh--hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccce
Confidence 233 2234578999999986 57899999999999999987754432 3566544433
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.70 E-value=1.2e-07 Score=109.48 Aligned_cols=98 Identities=14% Similarity=0.254 Sum_probs=73.4
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|-+|+|||+.+++....|.+|++.|..+||||+|+++||-..||+ ||||+-.... ..+|
T Consensus 695 ~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e----------------~pv~ 757 (1012)
T KOG1445|consen 695 VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSRE----------------QPVY 757 (1012)
T ss_pred hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCC----------------Cccc
Confidence 3567899999999999999999999999999999999999999999886 8999864310 2333
Q ss_pred EEE--ecccCCcEEEEEEccCCCEEEEEeCCC----eEEEEECC
Q 002778 312 KLH--RGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLS 349 (882)
Q Consensus 312 ~L~--RG~t~a~I~sLaFSPDg~~LAsgS~DG----TVhIWdI~ 349 (882)
+-. -|...| -|.|--||++|++.+.|. -|.+|+.+
T Consensus 758 Eg~gpvgtRgA---Ri~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 758 EGKGPVGTRGA---RILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred cCCCCccCcce---eEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 321 121122 366888999999888764 34555544
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.70 E-value=2.1e-07 Score=103.12 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=80.9
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|.+|.|||+.+++.+.++. |.+-|.++.|+.||.+|+|++.| ..|||||... | ..+.
T Consensus 149 sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD-KkvRv~dpr~-------~----------~~v~ 209 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD-KKVRVIDPRR-------G----------TVVS 209 (472)
T ss_pred hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc-ceeEEEcCCC-------C----------cEee
Confidence 34668899999999999998888 99999999999999999999985 5699999864 3 2444
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEe---CCCeEEEEECCCCCCccccc
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVS---SKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS---~DGTVhIWdI~~~gg~~~l~ 358 (882)
+. .+|..+.-.-+-|=.+|..+.+|- ++..+-|||-.....+..+.
T Consensus 210 e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~ 258 (472)
T KOG0303|consen 210 EG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ 258 (472)
T ss_pred ec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeE
Confidence 43 355555556677888999555553 35578899876655554443
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.70 E-value=3.6e-07 Score=102.75 Aligned_cols=101 Identities=23% Similarity=0.277 Sum_probs=78.2
Q ss_pred cCCCceEEEEECCCCcE-EEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 233 MDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~-v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
++.=|...+||+.++.. ...++-|...|..|+|+|-- .+|||||.|++ .+|||+..- .+. .+ -.+
T Consensus 297 ~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l-----~~K------~s-p~l 363 (498)
T KOG4328|consen 297 GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQL-----RGK------AS-PFL 363 (498)
T ss_pred eecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhh-----cCC------CC-cce
Confidence 34557899999988754 77888899999999999965 58899999776 899999631 010 00 124
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
+.+. +.-.|.+..|||++-.|++.+.|.+|+|||..
T Consensus 364 st~~---HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 364 STLP---HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eccc---ccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 4432 23469999999999889999999999999985
No 166
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.69 E-value=2.7e-07 Score=106.96 Aligned_cols=262 Identities=13% Similarity=0.083 Sum_probs=139.2
Q ss_pred cCCeEEEEECCCCeEE---EEEE----cCCcEEEEEEcC---CEEEEEECCeEEEEECCCCceeEE--EecCCCcccCCC
Q 002778 59 SPTAVRFYSFQSHCYE---HVLR----FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFS--VLTYPVPQLAGQ 126 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V---~tLk----f~s~V~sV~~S~---rlLAV~~d~qI~IWDa~T~e~l~t--L~t~p~p~~~~~ 126 (882)
.++.|.++|.+...-- +.|+ |.++|.++.+-+ ++|..+.|.+|++||+.+.++... +.+|...
T Consensus 72 E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~S----- 146 (720)
T KOG0321|consen 72 EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGS----- 146 (720)
T ss_pred CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccc-----
Confidence 5688999998654322 1222 778999999876 344445678899999998876554 4455431
Q ss_pred CcccccccceeeEEcC---cEEEEe--CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccc---
Q 002778 127 GAVGINVGYGPMAVGP---RWLAYA--SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS--- 198 (882)
Q Consensus 127 ~~~g~~~~~g~lAlsp---R~LAys--s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~Gli--- 198 (882)
...++|.| ..++.. +..++||+.-.-....+.--...+... -++ +....+.++.++.
T Consensus 147 --------vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~-~n~------~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 147 --------VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR-HNT------APTPSKPLKKRIRKWK 211 (720)
T ss_pred --------cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc-ccC------CCCCCchhhccccccc
Confidence 23455554 334443 346899984110000000000000000 000 0001112222211
Q ss_pred ---ccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEE--------EEeccC---CCCeEEEE
Q 002778 199 ---KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--------SQFKAH---TSPISALC 264 (882)
Q Consensus 199 ---ktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v--------~~f~aH---~spIsaLa 264 (882)
.++..+..-+ .-.+...++. .+..||.|+|||+...... ..+.-| .-.+.+|.
T Consensus 212 A~s~ti~ssvTvv----------~fkDe~tlaS---aga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~ 278 (720)
T KOG0321|consen 212 AASNTIFSSVTVV----------LFKDESTLAS---AGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI 278 (720)
T ss_pred cccCceeeeeEEE----------EEeccceeee---ccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE
Confidence 1111111000 0011122222 2346999999999865322 122233 23588999
Q ss_pred ECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC--cEEEEEEccCCCEEEEEeCCCe
Q 002778 265 FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGT 342 (882)
Q Consensus 265 FSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a--~I~sLaFSPDg~~LAsgS~DGT 342 (882)
.+..|++|.....|++ |..|++... + . ..+..+ -|.-+. .|. =..|||+++|++|+.|+.
T Consensus 279 lDssGt~L~AsCtD~s-Iy~ynm~s~------s-------~--sP~~~~-sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ 340 (720)
T KOG0321|consen 279 LDSSGTYLFASCTDNS-IYFYNMRSL------S-------I--SPVAEF-SGKLNSSFYVK-SELSPDDCSLLSGSSDEQ 340 (720)
T ss_pred ecCCCCeEEEEecCCc-EEEEecccc------C-------c--Cchhhc-cCcccceeeee-eecCCCCceEeccCCCcc
Confidence 9999987755444564 899998532 1 0 011111 111111 122 247899999999999999
Q ss_pred EEEEECCCCCCccc-cccccCCCCCCcccC
Q 002778 343 CHVFVLSPFGGDSG-FQTLSSQGGDPYLFP 371 (882)
Q Consensus 343 VhIWdI~~~gg~~~-l~~H~~~~~~~~~sp 371 (882)
+.||.++....... +.+|+..|....+.|
T Consensus 341 ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 341 AYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred eeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 99999988766654 578876655544443
No 167
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=8.6e-08 Score=111.51 Aligned_cols=106 Identities=36% Similarity=0.638 Sum_probs=93.4
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEE
Q 002778 248 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 327 (882)
Q Consensus 248 ~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaF 327 (882)
.+++.+.+|..++..+.|+|+++++.||+..++.+++|.++|....+. -....|+|++.||.|.++|..++|
T Consensus 483 ~vvqh~vahs~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wss--------laav~hly~l~rG~TsaKv~~~af 554 (788)
T KOG2109|consen 483 GVVQHYVAHSDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSS--------LAAVQHLYKLNRGSTSAKVVSTAF 554 (788)
T ss_pred ceeEEEeeccCccceeeecccccceecccccccccceEEeecccccHH--------HhhhhhhhhccCCCccceeeeeEe
Confidence 567788899999999999999999999999898889999998632111 123468999999999999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCCCcccccccc
Q 002778 328 SHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 361 (882)
Q Consensus 328 SPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~ 361 (882)
+-|++|+|.....+|-|||.+.+|++....+.|.
T Consensus 555 s~dsrw~A~~t~~~TthVfk~hpYgg~aeqrth~ 588 (788)
T KOG2109|consen 555 SEDSRWLAITTNHATTHVFKVHPYGGKAEQRTHG 588 (788)
T ss_pred ecchhhhhhhhcCCceeeeeeccccccccceecC
Confidence 9999999999999999999999999999999886
No 168
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.67 E-value=2e-07 Score=96.13 Aligned_cols=94 Identities=15% Similarity=0.283 Sum_probs=72.1
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEecCCCcccCCCCCCccccCCcccE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVH 309 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVWdi~p~~~~~~sG~~~~d~sss~~~ 309 (882)
.+..++.|.|||+. ++.+..|. ..++..|.|||+|++||+|+.++ ..|.+||+.. . ..
T Consensus 78 ~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-------~----------~~ 137 (194)
T PF08662_consen 78 YGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-------K----------KK 137 (194)
T ss_pred EccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-------C----------EE
Confidence 34567799999997 56666664 56889999999999999998632 2489999963 1 34
Q ss_pred EEEEEecccCCcEEEEEEccCCCEEEEEeC------CCeEEEEECC
Q 002778 310 LYKLHRGITSATIQDICFSHYSQWIAIVSS------KGTCHVFVLS 349 (882)
Q Consensus 310 l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~------DGTVhIWdI~ 349 (882)
+.+.. + ..+..++|||||++|++++. |+.++||+..
T Consensus 138 i~~~~---~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 138 ISTFE---H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eeccc---c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 44442 2 24789999999999999874 7889999985
No 169
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.65 E-value=4.6e-06 Score=92.25 Aligned_cols=206 Identities=17% Similarity=0.270 Sum_probs=128.8
Q ss_pred ccCCeEEEEECCCCeEEEEEE----cCCcEEEEEEcCC--EEEEEE---CCeEEEEECCCCceeEEEecCCCcccCCCCc
Q 002778 58 NSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSPR--IVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGA 128 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLk----f~s~V~sV~~S~r--lLAV~~---d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~ 128 (882)
-....|.|||+++-+.++++. .+..+.++.++.. +||.=. .+.|+|||+.+.+..-++..|..+
T Consensus 103 ~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~------- 175 (391)
T KOG2110|consen 103 CLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP------- 175 (391)
T ss_pred EEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc-------
Confidence 344669999999999999997 2344677777664 777632 357999999999988888777552
Q ss_pred ccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 129 VGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 129 ~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
+|. |||..++ .++|
T Consensus 176 ---------lAa----lafs~~G----------------------------~llA------------------------- 189 (391)
T KOG2110|consen 176 ---------LAA----LAFSPDG----------------------------TLLA------------------------- 189 (391)
T ss_pred ---------eeE----EEECCCC----------------------------CEEE-------------------------
Confidence 221 4443321 1111
Q ss_pred CCCCCCCCccCCCccccccccccccCCCc-eEEEEECCCCcEEEEeccCCC--CeEEEEECCCCCEEEEEEcCCCEEEEE
Q 002778 209 LPDGSSSPVSPNSVWKVGRHAGADMDNAG-IVVVKDFVTRAIISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIF 285 (882)
Q Consensus 209 ~pdgs~s~~S~ss~~k~~~la~~tgs~dG-~V~VWDl~s~~~v~~f~aH~s--pIsaLaFSPdGtlLATAS~dGt~IrVW 285 (882)
+++..| .|||+.+.+|+.+.+|+.-.. .|.+|+|+||+++|+..|..++ |+||
T Consensus 190 -----------------------TASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiF 245 (391)
T KOG2110|consen 190 -----------------------TASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIF 245 (391)
T ss_pred -----------------------EeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEE
Confidence 233444 468999999999999986554 4789999999999998888675 9999
Q ss_pred ecCCCcc-cCCCCCCccccCC------------cccEEEEEEeccc------CCcEEEEEEc--cCCCEEEEEeCCCeEE
Q 002778 286 RIMPSCM-RSGSGNHKYDWNS------------SHVHLYKLHRGIT------SATIQDICFS--HYSQWIAIVSSKGTCH 344 (882)
Q Consensus 286 di~p~~~-~~~sG~~~~d~ss------------s~~~l~~L~RG~t------~a~I~sLaFS--PDg~~LAsgS~DGTVh 344 (882)
.+..... +..+.+....|.. ....+....|-+. ...=..++|+ ++...+.+++.||.+.
T Consensus 246 KL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y 325 (391)
T KOG2110|consen 246 KLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLY 325 (391)
T ss_pred EecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEE
Confidence 9864321 0000000001100 0001111111111 1111233455 4778999999999999
Q ss_pred EEECCCC-CCcc-ccccc
Q 002778 345 VFVLSPF-GGDS-GFQTL 360 (882)
Q Consensus 345 IWdI~~~-gg~~-~l~~H 360 (882)
.|.+.+. ||+- .+..|
T Consensus 326 ~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 326 SYRLPPKEGGECALIKRH 343 (391)
T ss_pred EEEcCCCCCceeEEEEee
Confidence 9999874 4443 33445
No 170
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.65 E-value=1.4e-06 Score=90.04 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=42.5
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCEEEEEecC
Q 002778 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFRIM 288 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d-----Gt~IrVWdi~ 288 (882)
..|.|.+||+.+.+.+.++... .+..++|||||++|||+... ++.++||+..
T Consensus 123 ~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 123 LNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 4588999999998888777533 47899999999999999763 4568999984
No 171
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.64 E-value=4.8e-08 Score=105.42 Aligned_cols=116 Identities=14% Similarity=0.261 Sum_probs=90.3
Q ss_pred CCCccccccccccccCCCceEEEEECCC-----------------C-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 002778 219 PNSVWKVGRHAGADMDNAGIVVVKDFVT-----------------R-AIISQFKAHTSPISALCFDPSGTLLVTASVYGN 280 (882)
Q Consensus 219 ~ss~~k~~~la~~tgs~dG~V~VWDl~s-----------------~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt 280 (882)
+++++...+ +|+.|..|+|.|+.- + -++.+|--|.++|+.|.|+|..+.|+++|.|++
T Consensus 120 fs~DG~lvA----TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t 195 (430)
T KOG0640|consen 120 FSPDGSLVA----TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT 195 (430)
T ss_pred eCCCCcEEE----ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe
Confidence 445555543 788999999999961 1 367889999999999999999999999999765
Q ss_pred EEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccc
Q 002778 281 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 281 ~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~ 356 (882)
|++||.... +.++-++... ....|.+|+|.|.|.+|++|.+..|+||||++++.+.+.
T Consensus 196 -vKlFDfsK~---------------saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 196 -VKLFDFSKT---------------SAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred -EEEEecccH---------------HHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 999999531 1112222111 123699999999999999999999999999999987664
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.61 E-value=7.1e-07 Score=95.99 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=78.9
Q ss_pred CCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f-~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
-.+++++.||+.+.+....+ .||...|..|.|+|+-+ +|||++.||. |||||+... ...+.
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~t----------------k~pv~ 252 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKT----------------KFPVQ 252 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCC----------------Ccccc
Confidence 45899999999998766555 58999999999999875 7899998876 999999641 12456
Q ss_pred EEEecccCCcEEEEEEccC-CCEEEEEeCCCeEEEEECCCC
Q 002778 312 KLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPD-g~~LAsgS~DGTVhIWdI~~~ 351 (882)
+|. ++. ..|++|.|.|- .+.|.++++|..|.||....-
T Consensus 253 el~-~Hs-HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 253 ELP-GHS-HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred ccC-CCc-eEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 654 443 47999999985 588899999999999987544
No 173
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=1.2e-06 Score=104.70 Aligned_cols=236 Identities=16% Similarity=0.090 Sum_probs=133.3
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCC-----EE-EEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR-----IV-AVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~r-----lL-AV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
..++|+||...||++++.|. +...+..+.+.++ .+ +..+++.|++||-..+++++++..+-.+
T Consensus 35 ~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v---------- 104 (792)
T KOG1963|consen 35 TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPV---------- 104 (792)
T ss_pred eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCce----------
Confidence 45899999999999999998 6778888888752 22 3457899999999999999888642110
Q ss_pred cccceeeEEcCcEEEEeCCCe--EeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccC
Q 002778 132 NVGYGPMAVGPRWLAYASNTL--LLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 209 (882)
Q Consensus 132 ~~~~g~lAlspR~LAyss~~v--~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~ 209 (882)
..+.+. +|++...+ .+|-- .+..+. ....+..++.....+.+......++.
T Consensus 105 ----~~~~~~---~~~a~~s~~~~~s~~---~~~~~~-----------------~~s~~~~~q~~~~~~~t~~~~~~d~~ 157 (792)
T KOG1963|consen 105 ----HALVYK---PAQADISANVYVSVE---DYSILT-----------------TFSKKLSKQSSRFVLATFDSAKGDFL 157 (792)
T ss_pred ----eEEEec---hhHhCccceeEeecc---cceeee-----------------ecccccccceeeeEeeeccccchhhh
Confidence 111111 11111110 01100 000000 00001111111111101111111111
Q ss_pred CCC-CCCCccCCCccccccccccccCCCceEEEEECCCCcEE-E---EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 002778 210 PDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII-S---QFKAHTSPISALCFDPSGTLLVTASVYGNNINI 284 (882)
Q Consensus 210 pdg-s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v-~---~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrV 284 (882)
... ...++..++.+..-.+ -.+..+.+|+...+... . .-.-|+.++.+.+|||.|+++|+|..+|+ |.|
T Consensus 158 ~~~~~~~~I~~~~~ge~~~i-----~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~v 231 (792)
T KOG1963|consen 158 KEHQEPKSIVDNNSGEFKGI-----VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-ILV 231 (792)
T ss_pred hhhcCCccEEEcCCceEEEE-----EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EEE
Confidence 000 0112222222221111 13456778888775411 1 11358888999999999999999999997 899
Q ss_pred EecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 285 Wdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
|+---. .+ -+ .....|++. .+.|.+++||+||.+|.+|+..|-.-+|.+.+.+
T Consensus 232 w~d~~~-----~~-----~~---~t~t~lHWH--~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 232 WRDFGS-----SD-----DS---ETCTLLHWH--HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred Eecccc-----cc-----cc---ccceEEEec--ccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 985210 01 01 112234443 3579999999999999999999999999998865
No 174
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.60 E-value=5.9e-08 Score=111.83 Aligned_cols=99 Identities=22% Similarity=0.283 Sum_probs=79.9
Q ss_pred ccCCCceEEEEECCCC-------cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc
Q 002778 232 DMDNAGIVVVKDFVTR-------AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~-------~~v~~f~aH~spIsaLaFSPd-GtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ 303 (882)
.+..||.|+||.+..+ ..-..+.+|...|.+|.|+|= ..+||+|+.|- +|+|||+.. +
T Consensus 645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~-Ti~lWDl~~-------~------ 710 (1012)
T KOG1445|consen 645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS-TIELWDLAN-------A------ 710 (1012)
T ss_pred ecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccc-eeeeeehhh-------h------
Confidence 4678999999999764 345778899999999999994 46899999865 599999964 2
Q ss_pred CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 304 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 304 sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
....+| -||+. .|.++||||||+.+|+.+.||+++||.-..
T Consensus 711 ----~~~~~l-~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 711 ----KLYSRL-VGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred ----hhhhee-ccCcC-ceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 122233 47664 699999999999999999999999997543
No 175
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.59 E-value=9.1e-07 Score=95.27 Aligned_cols=180 Identities=17% Similarity=0.278 Sum_probs=116.1
Q ss_pred cCCeEEEEECCCCeE--EEE--EEcCCcEEEEEEcC---CEEEE-EECCeEEEEECCCCceeEEEecCCCcccCCCCccc
Q 002778 59 SPTAVRFYSFQSHCY--EHV--LRFRSSVCMVRCSP---RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVG 130 (882)
Q Consensus 59 sp~tVrlWDlkTG~~--V~t--Lkf~s~V~sV~~S~---rlLAV-~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g 130 (882)
-++|..|||+.+|.. |+| +-|+..|++|+|.+ +++|+ |.|+.+++||++.++--..+...|.|.
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~-------- 242 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS-------- 242 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC--------
Confidence 579999999999843 333 35999999999976 55554 668999999999887544454444320
Q ss_pred ccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCC
Q 002778 131 INVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 210 (882)
Q Consensus 131 ~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~p 210 (882)
.++- -|+ |+... -
T Consensus 243 -----~pLl----RLs--------wnkqD-------------------p------------------------------- 255 (364)
T KOG0290|consen 243 -----TPLL----RLS--------WNKQD-------------------P------------------------------- 255 (364)
T ss_pred -----Ccce----eec--------cCcCC-------------------c-------------------------------
Confidence 0110 011 11100 0
Q ss_pred CCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecC
Q 002778 211 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 211 dgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~ 288 (882)
.+++. -+.....|.|.|++.. ..+..|+.|+..|++|+|.| +...|+||+. +...-|||+.
T Consensus 256 -------------nymAT---f~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD-D~qaliWDl~ 318 (364)
T KOG0290|consen 256 -------------NYMAT---FAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD-DCQALIWDLQ 318 (364)
T ss_pred -------------hHHhh---hhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC-cceEEEEecc
Confidence 00000 0123457889998864 57899999999999999999 4579999997 5678899995
Q ss_pred CCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc-cCCCEEEEEeCCCeEEE
Q 002778 289 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-HYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 289 p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS-PDg~~LAsgS~DGTVhI 345 (882)
..+..+ + ...-..|+. .+.|..|.|+ ..+.|||.+..+ ++.|
T Consensus 319 q~~~~~--~-------~dPilay~a-----~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 319 QMPREN--G-------EDPILAYTA-----GGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred cccccC--C-------CCchhhhhc-----cceeeeeeecccCCCEEEEEecC-eeeE
Confidence 321001 0 011233432 2479999999 467899998755 3443
No 176
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=6.3e-06 Score=94.50 Aligned_cols=210 Identities=16% Similarity=0.151 Sum_probs=113.0
Q ss_pred CeEEEEECCCCeEEEEE-EcCCcEEEEEEcC--CEEEEEE-C---CeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 61 TAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGL-A---TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tL-kf~s~V~sV~~S~--rlLAV~~-d---~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+|.+||...+ ..+.+ .+...+.+.++++ +.|+.+. . .+|++||+.+++.. .+...+. .
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g----------~-- 249 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRG----------I-- 249 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCC----------C--
Confidence 46999998544 44444 4677888889886 5666544 2 36999999887653 2322221 0
Q ss_pred cceeeEEcC--cEEEEeCC-----CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 134 GYGPMAVGP--RWLAYASN-----TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 134 ~~g~lAlsp--R~LAyss~-----~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
....+++| +.|+|..+ .+.+|+...-..+.++. ..
T Consensus 250 -~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~------------------------------------~~- 291 (433)
T PRK04922 250 -NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN------------------------------------HF- 291 (433)
T ss_pred -ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc------------------------------------CC-
Confidence 12346666 67776421 24444421000011110 00
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCc--eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAG--IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNI 282 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG--~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~I 282 (882)
+.....+++++++.+.+. .+..| .|.++|+.+++.. .+..+.......+|+|||++||..+.++ ..|
T Consensus 292 -----~~~~~~~~spDG~~l~f~---sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 292 -----GIDTEPTWAPDGKSIYFT---SDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRI 362 (433)
T ss_pred -----CCccceEECCCCCEEEEE---ECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeE
Confidence 001112233444444332 12333 4666677766543 3322333455789999999998766443 258
Q ss_pred EEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC-CeEEEEECCCCC
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFG 352 (882)
Q Consensus 283 rVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D-GTVhIWdI~~~g 352 (882)
.+||+.. | ....+..+. ...+.+|||||++|+..+.+ +.-+||-+...+
T Consensus 363 ~v~d~~~-------g-----------~~~~Lt~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 363 AVMDLST-------G-----------SVRTLTPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEECCC-------C-----------CeEECCCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 8999853 2 122332221 24567999999998887764 344444443333
No 177
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.1e-07 Score=106.01 Aligned_cols=150 Identities=16% Similarity=0.175 Sum_probs=101.6
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc--cC
Q 002778 217 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM--RS 294 (882)
Q Consensus 217 ~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~--~~ 294 (882)
++++.++..++ ++..||++|||+..+...+..+.+|...|..|.|+|||++||+-+.+ ..+||++.+... ..
T Consensus 150 vaf~~~gs~la----tgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d--~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 150 VAFNGDGSKLA----TGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD--SARVWSVNTGAALARK 223 (398)
T ss_pred EEEcCCCCEee----eccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC--ceEEEEeccCchhhhc
Confidence 34454444443 67899999999998888888899999999999999999999999986 489999976310 00
Q ss_pred C--CCC-------CccccCCcc------------cEEEEE--Eec---------cc-CCcEEEEEEccCCCEEEEEeCCC
Q 002778 295 G--SGN-------HKYDWNSSH------------VHLYKL--HRG---------IT-SATIQDICFSHYSQWIAIVSSKG 341 (882)
Q Consensus 295 ~--sG~-------~~~d~sss~------------~~l~~L--~RG---------~t-~a~I~sLaFSPDg~~LAsgS~DG 341 (882)
+ .+. .+.|-.+.. ..++++ .++ .. ...|.+++-|+||+++|.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 0 000 000000000 011111 111 00 12689999999999999999999
Q ss_pred eEEEEECCCCCCccc-cccccCCCCCCcccCC
Q 002778 342 TCHVFVLSPFGGDSG-FQTLSSQGGDPYLFPV 372 (882)
Q Consensus 342 TVhIWdI~~~gg~~~-l~~H~~~~~~~~~sp~ 372 (882)
.|-|++........- -+.|..-+++..++|.
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence 999999877655443 3677766666666664
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.58 E-value=2.2e-06 Score=101.16 Aligned_cols=260 Identities=15% Similarity=0.174 Sum_probs=141.9
Q ss_pred CeEEEEECCCC-eEEEEEEcCCcEEEEEEcC---CEEEEEE-CCeEEEEECCCCce--eEEEe----cCCCcccCCCCcc
Q 002778 61 TAVRFYSFQSH-CYEHVLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLEN--KFSVL----TYPVPQLAGQGAV 129 (882)
Q Consensus 61 ~tVrlWDlkTG-~~V~tLkf~s~V~sV~~S~---rlLAV~~-d~qI~IWDa~T~e~--l~tL~----t~p~p~~~~~~~~ 129 (882)
..+.|||++.. ..-..+..++.|..+.|++ .+||+|. .++|.+||++.+.. ...+. +|+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~------ 295 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVT------ 295 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeE------
Confidence 48999999875 5666777899999999876 6888876 68999999987765 22221 2333210
Q ss_pred cccccceeeEEcCcEEEEe-CCCeEeccCCCCC-CccCCC--CCC--CCCcCCCCCccEEEeeccchhhhh----cccc-
Q 002778 130 GINVGYGPMAVGPRWLAYA-SNTLLLSNSGRLS-PQNLTP--SGV--SPSTSPGGSSLVARYAMEHSKQFA----AGLS- 198 (882)
Q Consensus 130 g~~~~~g~lAlspR~LAys-s~~v~lwdtG~vs-~q~lt~--~~v--s~s~SP~~GslVA~~A~essk~la----~Gli- 198 (882)
.+-+..-+.+-+++..+ +.++..|++-.++ |+.... +.. ....+..-+.+...+-..--..+. .|.+
T Consensus 296 --~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~ 373 (555)
T KOG1587|consen 296 --AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY 373 (555)
T ss_pred --EEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence 00000000011233333 3467788653222 111100 000 000000111111111000000000 1111
Q ss_pred c-cc-----------cccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEE
Q 002778 199 K-TL-----------SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCF 265 (882)
Q Consensus 199 k-tL-----------s~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~-s~~~v~~f~aH~spIsaLaF 265 (882)
+ .. ..+..-....|....+..++-...+-+ + ..|-+|+||.-. ....+..+..+...|.+++|
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fl---s-~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFL---S-VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred EEeccCCcccccccccccccccccCcceEeeecCCCccceee---e-eccceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 0 01 111111111222223334433222222 2 239999999988 66778888889999999999
Q ss_pred CCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEE
Q 002778 266 DPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCH 344 (882)
Q Consensus 266 SPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVh 344 (882)
||.- ..+|++..+|+ |.|||+.-.. ...+.+...+ ......+.|+++|+.||+|...|++|
T Consensus 450 SptrpavF~~~d~~G~-l~iWDLl~~~---------------~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGN-LDIWDLLQDD---------------EEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred cCcCceEEEEEcCCCc-eehhhhhccc---------------cCCccccccc--ccccceeecCCCCcEEEEecCCCcEE
Confidence 9976 57788888776 9999996321 0122222222 23567788999999999999999999
Q ss_pred EEECCC
Q 002778 345 VFVLSP 350 (882)
Q Consensus 345 IWdI~~ 350 (882)
+|++..
T Consensus 512 ~~~l~~ 517 (555)
T KOG1587|consen 512 ILKLSE 517 (555)
T ss_pred EEEcCc
Confidence 999964
No 179
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=6.8e-07 Score=99.79 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=62.4
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEE
Q 002778 256 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 335 (882)
Q Consensus 256 H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LA 335 (882)
-...|++|+.|+||+++|-|+.+|. |-|+++..- +.++-.++.|. ..|+.|.|+||.++++
T Consensus 280 ~~~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~l-----------------q~~~~vk~aH~-~~VT~ltF~Pdsr~~~ 340 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALGTMDGS-VAIYDAKSL-----------------QRLQYVKEAHL-GFVTGLTFSPDSRYLA 340 (398)
T ss_pred ccCcceeEEEcCCCcEEEEeccCCc-EEEEEecee-----------------eeeEeehhhhe-eeeeeEEEcCCcCccc
Confidence 3457999999999999999999886 789998531 34555555443 4799999999999999
Q ss_pred EEeCCCeEEEEECCC
Q 002778 336 IVSSKGTCHVFVLSP 350 (882)
Q Consensus 336 sgS~DGTVhIWdI~~ 350 (882)
+.|.+.+++|..|.-
T Consensus 341 svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 341 SVSSDNEAAVTKLAV 355 (398)
T ss_pred ccccCCceeEEEEee
Confidence 999999999998864
No 180
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=3.2e-06 Score=96.83 Aligned_cols=99 Identities=28% Similarity=0.418 Sum_probs=66.5
Q ss_pred CceEEEEECCCCcE--EEEeccCCCCeEEEEECCCCCEEEEEE-cCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 236 AGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 236 dG~V~VWDl~s~~~--v~~f~aH~spIsaLaFSPdGtlLATAS-~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
...|.+||+.+++. +..+.+|. .+++|+|||+.||.++ .+|. ++||.+... + ..+..
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~-~~Iy~~d~~------~----------~~~~~ 286 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGV-LNIYVMGAN------G----------GTPSQ 286 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCc-EEEEEEECC------C----------CCeEe
Confidence 35789999988753 44455554 3689999999998875 4454 667755321 1 12333
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEe-CCCeEEEEECCCCCCccc
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS-~DGTVhIWdI~~~gg~~~ 356 (882)
+..+ ...+.+.+|||||++|+.++ .+|..+||+++..++...
T Consensus 287 lt~~--~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 287 LTSG--AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred eccC--CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 3222 23578899999999988766 478999999876655443
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.52 E-value=3.7e-07 Score=101.28 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=89.5
Q ss_pred ccCCCceEEEEECCCC-------cEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc
Q 002778 232 DMDNAGIVVVKDFVTR-------AIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~-------~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ 303 (882)
+++.|.+|.||++..+ +.+..|.+|+..|--++|+|.. +.|+||+. +.+|.||++.+ |
T Consensus 99 SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~-Dn~v~iWnv~t-------g------ 164 (472)
T KOG0303|consen 99 SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS-DNTVSIWNVGT-------G------ 164 (472)
T ss_pred cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC-CceEEEEeccC-------C------
Confidence 6789999999999754 4578899999999999999976 58889998 56799999965 4
Q ss_pred CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccccc
Q 002778 304 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 361 (882)
Q Consensus 304 sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~ 361 (882)
..+.++. ++..|++++|+.||.+|++++.|..|||||.....-...-.+|.
T Consensus 165 ----eali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he 215 (472)
T KOG0303|consen 165 ----EALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE 215 (472)
T ss_pred ----ceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc
Confidence 3455553 56789999999999999999999999999987755444445665
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.52 E-value=3.6e-06 Score=90.76 Aligned_cols=123 Identities=10% Similarity=0.159 Sum_probs=90.1
Q ss_pred ccCCCceEEEEECCCCc---EEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 002778 232 DMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~---~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
+.+.|-++.|||++++. +..+|-||..+|..++|...| .++|+.+.||. +|+||+..- . +.
T Consensus 168 tSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS-vRmFDLR~l-------e-------HS 232 (364)
T KOG0290|consen 168 TSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS-VRMFDLRSL-------E-------HS 232 (364)
T ss_pred eecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc-EEEEEeccc-------c-------cc
Confidence 56789999999999863 568899999999999999977 47899999886 899999641 0 11
Q ss_pred cEEEEEEecccCCcEEEEEEccCC-CEEEEEeCC-CeEEEEECCCCCCcc-ccccccCCCCCCcccC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYS-QWIAIVSSK-GTCHVFVLSPFGGDS-GFQTLSSQGGDPYLFP 371 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~D-GTVhIWdI~~~gg~~-~l~~H~~~~~~~~~sp 371 (882)
..+|+- ..+.....-|+|++.. +++|+--.| ..|.|-||.....++ .++.|.+.+.+....|
T Consensus 233 TIIYE~--p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 233 TIIYED--PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAP 297 (364)
T ss_pred eEEecC--CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecC
Confidence 244542 2224567889999755 677776554 469999998666554 7899987665544433
No 183
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=5e-06 Score=95.30 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCCceEEEE--ECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 234 DNAGIVVVK--DFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 234 s~dG~V~VW--Dl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
..+|...|| |+.++. +..+..|...+...+|+|||+.|+..+..+....||.+... .+ ....+
T Consensus 259 ~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-----~g--------~~~~l- 323 (427)
T PRK02889 259 SRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-----GG--------AAQRV- 323 (427)
T ss_pred ccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-----CC--------ceEEE-
Confidence 345555555 555444 55666666666778999999999877765444788876421 01 01112
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCC---eEEEEECCCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSPF 351 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DG---TVhIWdI~~~ 351 (882)
.+ .| ......+|||||++||..+.++ .|.+||+...
T Consensus 324 t~-~g---~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 324 TF-TG---SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred ec-CC---CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 11 12 1234689999999999887665 5889998653
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=2.9e-07 Score=105.64 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=83.6
Q ss_pred ccCCCceEEEEECCC--------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc
Q 002778 232 DMDNAGIVVVKDFVT--------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 232 tgs~dG~V~VWDl~s--------~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ 303 (882)
+++.+|++++|.+.. .+.+.+|++|.+||.|++..+.|..+.||+.||+ |+.|++-+. +. ..|-
T Consensus 311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n------~d-p~ds 382 (577)
T KOG0642|consen 311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPN------QD-PDDS 382 (577)
T ss_pred EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCC------CC-cccc
Confidence 678999999999921 2577899999999999999999999999999886 999998431 10 0000
Q ss_pred CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 304 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 304 sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
. ....+....-|++.+ ||.|++|.....|+++|.|||+++|...
T Consensus 383 ~-dp~vl~~~l~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 383 Y-DPSVLSGTLLGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred c-Ccchhccceeccccc-eeeeeecccccceeeecCCceEEeeccC
Confidence 0 001122223588865 9999999999999999999999999864
No 185
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.51 E-value=2.1e-06 Score=93.66 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=53.3
Q ss_pred ccccccccCccCCCCCccc---ccCCeEEEEECCCCeEEEEEE----cCCcEEEEEEcC--CEEEE-EECCeEEEEECCC
Q 002778 39 SHLGGVRDGMMDSQSGNCV---NSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSP--RIVAV-GLATQIYCFDALT 108 (882)
Q Consensus 39 ~~~~~v~~~~~~~~~~~~~---~sp~tVrlWDlkTG~~V~tLk----f~s~V~sV~~S~--rlLAV-~~d~qI~IWDa~T 108 (882)
||+++++.-...+..-|.+ +.+++||+|+++++.++..+. |++.|++|.|+. +++++ |.|.+|++|++.+
T Consensus 133 ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 133 GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 4444454433333333333 578999999999999999985 899999999986 56665 6799999999985
Q ss_pred Cc
Q 002778 109 LE 110 (882)
Q Consensus 109 ~e 110 (882)
.+
T Consensus 213 ~~ 214 (385)
T KOG1034|consen 213 KE 214 (385)
T ss_pred hH
Confidence 44
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.51 E-value=2.7e-07 Score=109.22 Aligned_cols=246 Identities=15% Similarity=0.136 Sum_probs=153.9
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCC--EEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~r--lLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+..|+||++.++.++.+.. |.+.|+.++.+.+ ++|++. |.-|++|.+.++..+..|.+|.. .
T Consensus 210 dd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg-------------a 276 (1113)
T KOG0644|consen 210 DDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG-------------A 276 (1113)
T ss_pred ccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcccc-------------c
Confidence 56899999999999999997 8889999998864 334433 55699999999998888877764 2
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccch-hhh-------hcccccccccccc
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS-KQF-------AAGLSKTLSKYCQ 206 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~ess-k~l-------a~GliktLs~~~~ 206 (882)
+.+++|+|+--...+.+..+|+.- +.+....| -...+.++.++.....+.. ... .++.+....-.|.
T Consensus 277 vtaiafsP~~sss~dgt~~~wd~r-~~~~~y~p----rp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~ 351 (1113)
T KOG0644|consen 277 VTAIAFSPRASSSDDGTCRIWDAR-LEPRIYVP----RPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR 351 (1113)
T ss_pred eeeeccCccccCCCCCceEecccc-ccccccCC----CCCCcccccceeeeeccccccccccccCCcccccchhhHhhhh
Confidence 467888886522223478899852 22211111 1112344555443332211 111 1111100000000
Q ss_pred ccCCCCCCCCccC-CCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE-EEEEcCCCEEEE
Q 002778 207 ELLPDGSSSPVSP-NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL-VTASVYGNNINI 284 (882)
Q Consensus 207 ~l~pdgs~s~~S~-ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlL-ATAS~dGt~IrV 284 (882)
. ....++. .++..... .++-.+-.+.+|++.+|..+..+.+|.+++..|.|+|=...+ .+|+.||. +.|
T Consensus 352 ~-----~~lif~t~ssd~~~~~---~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs-t~i 422 (1113)
T KOG0644|consen 352 S-----NLLIFVTRSSDLSSIV---VTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS-TII 422 (1113)
T ss_pred c-----cceEEEeccccccccc---eeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc-eEe
Confidence 0 0000000 00000000 034567788999999999999999999999999999966544 57888887 569
Q ss_pred EecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 285 Wdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
||+.. | ...+.|. .|+ ..+.+-+||+||+.++...+-|.+.|+....
T Consensus 423 wdi~e-------g--------~pik~y~--~gh--~kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 423 WDIWE-------G--------IPIKHYF--IGH--GKLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred eeccc-------C--------Ccceeee--ccc--ceeeccccCCCCceEecCCCCCceEEeccCC
Confidence 99942 2 2234444 342 3578889999999999999999999876543
No 187
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=1.9e-05 Score=90.61 Aligned_cols=210 Identities=16% Similarity=0.105 Sum_probs=111.3
Q ss_pred CeEEEEECCCCeEEEEE-EcCCcEEEEEEcC--CEEEEEEC----CeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 61 TAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tL-kf~s~V~sV~~S~--rlLAV~~d----~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
..|.+||. .|...+.+ .+...+.+.++++ +.|+.+.. .+|++||+.+++.. .+...+. .
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g----------~-- 241 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKG----------S-- 241 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCC----------C--
Confidence 35777776 44444444 4677888999986 56666542 35999999988753 2322221 0
Q ss_pred cceeeEEcC--cEEEEeCC---CeEeccC--CCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 134 GYGPMAVGP--RWLAYASN---TLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 134 ~~g~lAlsp--R~LAyss~---~v~lwdt--G~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
....+++| +.|+|..+ ...||.. ..-..+.++ ..
T Consensus 242 -~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt------------------------------------~~-- 282 (427)
T PRK02889 242 -NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT------------------------------------QS-- 282 (427)
T ss_pred -ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC------------------------------------CC--
Confidence 12456777 67877522 2334421 000001111 00
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCceEEEEE--CCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD--FVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NI 282 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWD--l~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt--~I 282 (882)
.+.......+++++.+.+. .+..|...||. +.+++.. .+..+.......+|||||++||.++.++. .|
T Consensus 283 ----~~~~~~~~wSpDG~~l~f~---s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I 354 (427)
T PRK02889 283 ----SGIDTEPFFSPDGRSIYFT---SDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKL 354 (427)
T ss_pred ----CCCCcCeEEcCCCCEEEEE---ecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEE
Confidence 0001112233445544432 12345555554 4454432 22222233446789999999998775443 58
Q ss_pred EEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCC-eEEEEECCCCC
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG-TCHVFVLSPFG 352 (882)
Q Consensus 283 rVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DG-TVhIWdI~~~g 352 (882)
.+||+.. | ....+..+ ....+.+|||||++|+.++.++ .-.||-+...+
T Consensus 355 ~v~d~~~-------g-----------~~~~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 355 YVQDLAT-------G-----------QVTALTDT---TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred EEEECCC-------C-----------CeEEccCC---CCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 8999853 2 12222222 2246789999999999887654 44455444434
No 188
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=1.7e-05 Score=90.93 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=60.0
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
..|.+||+.+++. ..+..|.......+|+|||+.||.++..+ ..|.+||+.. + ....+.
T Consensus 270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-------~-----------~~~~lt 330 (435)
T PRK05137 270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-------S-----------NPRRIS 330 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-------C-----------CeEEee
Confidence 3577889887764 55666666677899999999998877533 2456666532 1 222332
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCC-C--eEEEEECC
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLS 349 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~D-G--TVhIWdI~ 349 (882)
.+ ...+...+|||||++|+..+.+ + .+.+|++.
T Consensus 331 ~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 331 FG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred cC--CCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 22 1235678999999999988754 3 45556653
No 189
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=8e-06 Score=93.68 Aligned_cols=95 Identities=23% Similarity=0.297 Sum_probs=62.0
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH- 314 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~- 314 (882)
...|.+||+.+++. ..+..|.......+|+|||+.|+..+..+....||.+... .+ ....+.
T Consensus 271 ~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-----~g-----------~~~~lt~ 333 (433)
T PRK04922 271 NPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-----GG-----------SAERLTF 333 (433)
T ss_pred CceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CC-----------CeEEeec
Confidence 34799999988764 5566666556778999999999887754333455544210 01 111221
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCC---eEEEEECCC
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 350 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~DG---TVhIWdI~~ 350 (882)
.| .....++|||||++|+..+.++ .|.+|++..
T Consensus 334 ~g---~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 334 QG---NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred CC---CCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 12 2245689999999999876543 588888854
No 190
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.45 E-value=4.1e-07 Score=106.23 Aligned_cols=99 Identities=14% Similarity=0.300 Sum_probs=78.7
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEec
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 316 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG 316 (882)
-.|+||...+-..+..|..|.-.|+-|+|||||++|+++|.| +++.||..+... .. .. . +.....
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD-Rt~sl~~~~~~~----~~--------e~-~-fa~~k~ 616 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD-RTVSLYEVQEDI----KD--------EF-R-FACLKA 616 (764)
T ss_pred eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC-ceEEeeeeeccc----ch--------hh-h-hccccc
Confidence 469999999988888999999999999999999999999995 458999985420 00 00 1 111122
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 317 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 317 ~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
|+ ..|++.+|+||++++|++|.|.+|.||.+...
T Consensus 617 Ht-RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 617 HT-RIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred cc-eEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 22 37999999999999999999999999998754
No 191
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=5e-06 Score=92.47 Aligned_cols=102 Identities=21% Similarity=0.194 Sum_probs=83.5
Q ss_pred CCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 234 DNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 234 s~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
..-+.|++||...+ +++.+|.--..+|+++...|+|+++.+|...|. +..||+.. + +++..
T Consensus 223 T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~-------~----------kl~g~ 284 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRG-------G----------KLLGC 284 (412)
T ss_pred ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccC-------c----------eeecc
Confidence 34578999999876 578899888999999999999999999998776 88999963 2 23333
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
...|.+. .|.+|.-.|..++||+++.|.-+||||+.+.+-.
T Consensus 285 ~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 285 GLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 3346554 5999999999999999999999999999885443
No 192
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=2e-05 Score=90.36 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=52.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
.|.+||+.+++. ..+..+...+...+|+|||+.||..+.++ ..|.+||+.. + ....+..
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-------~-----------~~~~lt~ 375 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-------S-----------GERILTS 375 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC-------C-----------ceEeccC
Confidence 577788776543 34433455567789999999998876543 3466777632 1 1122222
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCC
Q 002778 316 GITSATIQDICFSHYSQWIAIVSSK 340 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsgS~D 340 (882)
+ ..+.+++|||||++|+..+.+
T Consensus 376 ~---~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 376 G---FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred C---CCCCCCeECCCCCEEEEEEcc
Confidence 2 236789999999999887654
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.43 E-value=9.9e-06 Score=88.72 Aligned_cols=117 Identities=18% Similarity=0.161 Sum_probs=74.4
Q ss_pred cCCCccccccccccccCCCceEEEEECCC-C---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc
Q 002778 218 SPNSVWKVGRHAGADMDNAGIVVVKDFVT-R---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 218 S~ss~~k~~~la~~tgs~dG~V~VWDl~s-~---~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
.++++++.+..+ ...++.|.+||+.+ + +.+..+. +......++|+|+|++|.+++..+..|.|||+.+.
T Consensus 86 ~~~~~g~~l~v~---~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~--- 158 (330)
T PRK11028 86 STDHQGRFLFSA---SYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD--- 158 (330)
T ss_pred EECCCCCEEEEE---EcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC---
Confidence 344455544332 23478999999964 2 2333333 33345678999999999888876677999999641
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeC-CCeEEEEECCCC
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPF 351 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~-DGTVhIWdI~~~ 351 (882)
|. ..........+..| .....++|+|||++|.+++. +++|.+|+++..
T Consensus 159 ---g~----l~~~~~~~~~~~~g---~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~ 207 (330)
T PRK11028 159 ---GH----LVAQEPAEVTTVEG---AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP 207 (330)
T ss_pred ---Cc----ccccCCCceecCCC---CCCceEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 10 00000011122223 23567999999999988876 899999999854
No 194
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.38 E-value=5.8e-06 Score=93.33 Aligned_cols=107 Identities=15% Similarity=0.075 Sum_probs=71.6
Q ss_pred ccCCCceEEEEECCCCcE----EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 002778 232 DMDNAGIVVVKDFVTRAI----ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~----v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
+++.|++++|||+..... +-....|+.+|.+..|||+|-.|+|.+.|. .|||||..-- ++. .......
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~-~IRv~dss~~------sa~-~~p~~~I 411 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN-EIRVFDSSCI------SAK-DEPLGTI 411 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC-ceEEeecccc------ccc-CCcccee
Confidence 678999999999986432 234457999999999999987799999866 4999998310 000 0000000
Q ss_pred cEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
.|-...-|-. .+..-+|-||..+|+++-.-..|-|||-+
T Consensus 412 ~Hn~~t~Rwl---T~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 412 PHNNRTGRWL---TPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred eccCcccccc---cchhheeCCCccEEEEeccCcceeEEcCC
Confidence 1111111111 13345799999999999988889998754
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=2.4e-05 Score=82.92 Aligned_cols=98 Identities=13% Similarity=0.264 Sum_probs=73.4
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEE-CCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaF-SPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
..||.+.-||+++|+....+++|++.|.+++- +.+|+ +.|++.||+ +||||+++. +++..
T Consensus 133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGt-vRvWd~kt~-----------------k~v~~ 193 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGT-VRVWDTKTQ-----------------KHVSM 193 (325)
T ss_pred cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecCCCcc-EEEEecccc-----------------ceeEE
Confidence 46899999999999999999999999999998 66665 558999887 899999762 22222
Q ss_pred --------EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCC
Q 002778 313 --------LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 313 --------L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
+.|-+-...|-+++- +..||+.|.-. ...||.+.....
T Consensus 194 ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrsse~ 239 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRSSES 239 (325)
T ss_pred eccccChhhcCcccCceeEEEec--cCceEEecCCC-ceeEEeccCCCc
Confidence 224333345766665 55699888644 588999976543
No 196
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=2e-05 Score=91.37 Aligned_cols=247 Identities=16% Similarity=0.139 Sum_probs=144.6
Q ss_pred cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcC----cEEEEeC-C
Q 002778 79 FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYAS-N 150 (882)
Q Consensus 79 f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp----R~LAyss-~ 150 (882)
|.+.|++|...+ ..||.|. +++++||.+.|+.|++++..... +..+|++| ..||.+- .
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~--------------I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE--------------IRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecce--------------eEEEEecCCCCceeEEEEecC
Confidence 677888888765 7888886 57899999999999999864321 24555655 4455442 2
Q ss_pred CeEeccC--CC-CC----CccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCcc
Q 002778 151 TLLLSNS--GR-LS----PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVW 223 (882)
Q Consensus 151 ~v~lwdt--G~-vs----~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~ 223 (882)
.+.|-+. |. +. -+.|.. .+....|+. .+|........++-.++. ..+........+.--..+
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~--~~~~~~p~~--~~~~W~~~~~~e~~~~v~-------~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLAS--APNESEPDA--AVVTWSRASLDELEKGVC-------IVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhc--CCCccCCcc--cceeechhhhhhhccceE-------EEEecCCccceeeeecCC
Confidence 2333332 21 10 001100 000011111 223333322222222211 000000000011111122
Q ss_pred ccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc
Q 002778 224 KVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 224 k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ 303 (882)
.+++....+ +....|.|+++...+...-|+-..+-|.++.|.|.--+|+.|+. +.|||||+.. +
T Consensus 534 DYlatV~~~-~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~~vRiYdL~k-------q------ 597 (733)
T KOG0650|consen 534 DYLATVMPD-SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--RSVRIYDLSK-------Q------ 597 (733)
T ss_pred ceEEEeccC-CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--cceEEEehhH-------H------
Confidence 333332211 23456889999887777778777788999999999999999987 3599999953 1
Q ss_pred CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc-ccccccCCCCCCcccCC
Q 002778 304 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQGGDPYLFPV 372 (882)
Q Consensus 304 sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~-~l~~H~~~~~~~~~sp~ 372 (882)
..+.+|..|. ..|.+++.+|.|.-|+.+|.|+.+..||++-...+. +++-|...+....+++.
T Consensus 598 ----elvKkL~tg~--kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r 661 (733)
T KOG0650|consen 598 ----ELVKKLLTGS--KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR 661 (733)
T ss_pred ----HHHHHHhcCC--eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc
Confidence 3444554442 269999999999999999999999999998765443 67788765555555553
No 197
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=2.9e-05 Score=85.92 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=83.9
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
+..|+|||..++..+-...---+.++-|.|||||.+|..|.-|+ +++||+.... |.... +.+
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da-vfrlw~e~q~------------wt~er---w~l-- 278 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA-VFRLWQENQS------------WTKER---WIL-- 278 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc-eeeeehhccc------------ceecc---eec--
Confidence 45799999999876655544557789999999999999999866 5999976321 22221 222
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccc------cccCCCC--------CCc--ccCCCCCCccc
Q 002778 316 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ------TLSSQGG--------DPY--LFPVLSLPWWC 379 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~------~H~~~~~--------~~~--~sp~~~lpw~~ 379 (882)
| ...|+.-+|+|+|++|.-++... -+||.+.-.+....+. .|.-.++ +.. --+...++|++
T Consensus 279 g--sgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp 355 (445)
T KOG2139|consen 279 G--SGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP 355 (445)
T ss_pred c--CCceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC
Confidence 2 23799999999999988776554 4688876544433332 2211111 101 12355678888
Q ss_pred CCCCc
Q 002778 380 TSSGI 384 (882)
Q Consensus 380 ~s~~~ 384 (882)
..++.
T Consensus 356 sGeyL 360 (445)
T KOG2139|consen 356 SGEYL 360 (445)
T ss_pred CCCEE
Confidence 88875
No 198
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.30 E-value=0.00029 Score=79.56 Aligned_cols=256 Identities=12% Similarity=0.041 Sum_probs=132.0
Q ss_pred CeEEEEECCCCeEEEEEE--cCCcEEEEEEcCCEEEEEE-----------CCeEEEEECCCCceeEEEecCCCcccCCCC
Q 002778 61 TAVRFYSFQSHCYEHVLR--FRSSVCMVRCSPRIVAVGL-----------ATQIYCFDALTLENKFSVLTYPVPQLAGQG 127 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLk--f~s~V~sV~~S~rlLAV~~-----------d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~ 127 (882)
++|.+.|..+++.+.++. +.-... +.-+++.|.++. ++.|.+||+.|++.+..+...+.|.. +
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~--~- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF--L- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh--h-
Confidence 789999999999999997 232332 334445665543 36799999999999988875444421 0
Q ss_pred cccccccceeeEEcC--cEEEEe----CCCeEeccCCCCC-CccCCCCC-CCC---------CcCCCCCccEEEeeccch
Q 002778 128 AVGINVGYGPMAVGP--RWLAYA----SNTLLLSNSGRLS-PQNLTPSG-VSP---------STSPGGSSLVARYAMEHS 190 (882)
Q Consensus 128 ~~g~~~~~g~lAlsp--R~LAys----s~~v~lwdtG~vs-~q~lt~~~-vs~---------s~SP~~GslVA~~A~ess 190 (882)
+......++++| +||-.. .+.+.+.|..... ......|+ ... ..++++..+...+..+..
T Consensus 103 ---~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 103 ---VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred ---ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence 011124577877 666533 2345555532111 00000010 000 001111111000000000
Q ss_pred hhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceEEEEECCC-----CcEEEEecc-------CCC
Q 002778 191 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-----RAIISQFKA-------HTS 258 (882)
Q Consensus 191 k~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s-----~~~v~~f~a-------H~s 258 (882)
...+.. +.+..- .. +-.....+++ .+++.+- . +..|+|.+.|+.. .+.+..+.. ...
T Consensus 180 ~~~~~~--~vf~~~-~~--~v~~rP~~~~-~dg~~~~-v----s~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~ 248 (352)
T TIGR02658 180 PKIKPT--EVFHPE-DE--YLINHPAYSN-KSGRLVW-P----TYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG 248 (352)
T ss_pred eEEeee--eeecCC-cc--ccccCCceEc-CCCcEEE-E----ecCCeEEEEecCCCcceecceeeeccccccccccCCC
Confidence 000000 000000 00 0000001111 1233221 1 2349999999643 333333321 122
Q ss_pred CeEEEEECCCCCEEEEEEc---------CCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEcc
Q 002778 259 PISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 329 (882)
Q Consensus 259 pIsaLaFSPdGtlLATAS~---------dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSP 329 (882)
.+.-++|+|+|+.|..+.. .++.|.|+|+.+ + +.+.++.-| ..++.|+|||
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-------~----------kvi~~i~vG---~~~~~iavS~ 308 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-------G----------KRLRKIELG---HEIDSINVSQ 308 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-------C----------eEEEEEeCC---CceeeEEECC
Confidence 3344999999988877431 125688889854 2 456666544 4689999999
Q ss_pred CCC-EEEEEe-CCCeEEEEECCCCCCc
Q 002778 330 YSQ-WIAIVS-SKGTCHVFVLSPFGGD 354 (882)
Q Consensus 330 Dg~-~LAsgS-~DGTVhIWdI~~~gg~ 354 (882)
|++ +|.+.+ .+++|+|+|+......
T Consensus 309 Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 309 DAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 999 777776 6899999999876443
No 199
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.00024 Score=81.11 Aligned_cols=213 Identities=11% Similarity=0.044 Sum_probs=110.1
Q ss_pred eEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEE-C---CeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 62 AVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-A---TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 62 tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~-d---~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
.|.++|...+.....+.+...+.+.++++ +.|+... . .+|++||+.+++.. .+...+.. .
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~-------------~ 245 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGL-------------N 245 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCC-------------c
Confidence 57788887655444445777889899986 5665543 2 25999999988653 23221110 1
Q ss_pred eeeEEcC--cEEEEeCC-----CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccccc
Q 002778 136 GPMAVGP--RWLAYASN-----TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 208 (882)
Q Consensus 136 g~lAlsp--R~LAyss~-----~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l 208 (882)
...+++| ++|+|..+ .+.+++...-..+.++. ..
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~------------------------------------~~--- 286 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN------------------------------------HP--- 286 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc------------------------------------CC---
Confidence 2356776 78887532 12233321000011111 00
Q ss_pred CCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEe
Q 002778 209 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFR 286 (882)
Q Consensus 209 ~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVWd 286 (882)
+......++++++.+.+.. .......|.++|+.+++... +..........+|+|||+.|+..+.++ ..|.+||
T Consensus 287 ---~~~~~~~~spDg~~i~f~s-~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~d 361 (430)
T PRK00178 287 ---AIDTEPFWGKDGRTLYFTS-DRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQD 361 (430)
T ss_pred ---CCcCCeEECCCCCEEEEEE-CCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEE
Confidence 0001112223334333321 11112357778888776432 221122334578999999998876543 2466777
Q ss_pred cCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC-CeEEEEECCCCCC
Q 002778 287 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG 353 (882)
Q Consensus 287 i~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D-GTVhIWdI~~~gg 353 (882)
+.. | ....+..+ ......+|||||++|+.++.+ |.-+||-+...+.
T Consensus 362 l~t-------g-----------~~~~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 362 LQR-------G-----------SVRILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCC-------C-----------CEEEccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 743 2 12222111 112356899999999987754 4445554444343
No 200
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=8.4e-06 Score=93.93 Aligned_cols=207 Identities=18% Similarity=0.216 Sum_probs=119.0
Q ss_pred cCCeEEEEEC---C-----CCeEEEEEE-cCCcEEEEEEcC--CE-EEEEECCeEEEEECCCCc----------eeEEEe
Q 002778 59 SPTAVRFYSF---Q-----SHCYEHVLR-FRSSVCMVRCSP--RI-VAVGLATQIYCFDALTLE----------NKFSVL 116 (882)
Q Consensus 59 sp~tVrlWDl---k-----TG~~V~tLk-f~s~V~sV~~S~--rl-LAV~~d~qI~IWDa~T~e----------~l~tL~ 116 (882)
-+++|++|.| + .-+.+.+|+ |.++|.+|.+.. +. +..+.|+.|++|++.... ...++.
T Consensus 314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~ 393 (577)
T KOG0642|consen 314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL 393 (577)
T ss_pred cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee
Confidence 5689999999 2 234666776 889999999865 44 445668999999654211 112233
Q ss_pred cCCCcccCCCCcccccccceeeEEcC---cEEEEeC-CCeEeccCCCCCCccCCC---CCCCCCcCCCCCccEEEeeccc
Q 002778 117 TYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYAS-NTLLLSNSGRLSPQNLTP---SGVSPSTSPGGSSLVARYAMEH 189 (882)
Q Consensus 117 t~p~p~~~~~~~~g~~~~~g~lAlsp---R~LAyss-~~v~lwdtG~vs~q~lt~---~~vs~s~SP~~GslVA~~A~es 189 (882)
+|.. ..+.+++++ +.|.++. .++++|..+..++-.+.. .+++++.. +...+.
T Consensus 394 Ghtd-------------avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd--------~~ss~~ 452 (577)
T KOG0642|consen 394 GHTD-------------AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVD--------RTSSRP 452 (577)
T ss_pred cccc-------------ceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEe--------eccchh
Confidence 3433 135677765 6666654 479999865554422222 12333221 001111
Q ss_pred hhhhhcccc-----ccccccccccCCCCCCCCcc--CCCcccc-----ccccccccCCCceEEEEECCCCcEEEEeccCC
Q 002778 190 SKQFAAGLS-----KTLSKYCQELLPDGSSSPVS--PNSVWKV-----GRHAGADMDNAGIVVVKDFVTRAIISQFKAHT 257 (882)
Q Consensus 190 sk~la~Gli-----ktLs~~~~~l~pdgs~s~~S--~ss~~k~-----~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~ 257 (882)
+..++.... .++.--....+...+.++.. .+--.++ +.+. -++..+++|+++|..++..+....+|.
T Consensus 453 a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~-~~~hed~~Ir~~dn~~~~~l~s~~a~~ 531 (577)
T KOG0642|consen 453 AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT-FTAHEDRSIRFFDNKTGKILHSMVAHK 531 (577)
T ss_pred HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee-EecccCCceecccccccccchheeecc
Confidence 122222110 00000000000000010000 0000000 0001 156889999999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 258 SPISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 258 spIsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
..+++++|.|+|-+|++++.|+. +++|.+.
T Consensus 532 ~svtslai~~ng~~l~s~s~d~s-v~l~kld 561 (577)
T KOG0642|consen 532 DSVTSLAIDPNGPYLMSGSHDGS-VRLWKLD 561 (577)
T ss_pred ceecceeecCCCceEEeecCCce-eehhhcc
Confidence 99999999999999999999876 8999984
No 201
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.28 E-value=0.00011 Score=82.70 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=60.8
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt--~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
..|.+||+.++.. ..+..|.......+|+|||+.|+..+.++. .|.++++.. + ....+.
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-------~-----------~~~~l~ 318 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-------G-----------EVRRLT 318 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-------C-----------CEEEee
Confidence 4588889887653 445555555567799999999887765443 344455431 1 122222
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCC---eEEEEECCC
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 350 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~DG---TVhIWdI~~ 350 (882)
.+ ...+..++|||||++|+.++.++ .|.+|++..
T Consensus 319 ~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 319 FR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred cC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 11 12467789999999999998776 677777764
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.27 E-value=1.4e-05 Score=93.12 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=107.1
Q ss_pred cEEEEEEcC--CEEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEeccCCC
Q 002778 82 SVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR 159 (882)
Q Consensus 82 ~V~sV~~S~--rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~ 159 (882)
.|++|+|.| ..|+++.++++++||...|..+.+|.+|... . ..+||+-++.++
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDt---------------V-----ycVAys~dGkrF----- 68 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDT---------------V-----YCVAYAKDGKRF----- 68 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccce---------------E-----EEEEEccCCcee-----
Confidence 688999987 4677778899999999999999999988762 1 125665432111
Q ss_pred CCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccCCCceE
Q 002778 160 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 239 (882)
Q Consensus 160 vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V 239 (882)
+ +|+.|.+|
T Consensus 69 ---------------------------------------------------------------------A--SG~aDK~V 77 (1081)
T KOG1538|consen 69 ---------------------------------------------------------------------A--SGSADKSV 77 (1081)
T ss_pred ---------------------------------------------------------------------c--cCCCceeE
Confidence 1 34568899
Q ss_pred EEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEeccc
Q 002778 240 VVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 318 (882)
Q Consensus 240 ~VWDl~s~~~v~~f~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t 318 (882)
.||.-.-. ..++ .|.+.|.||.|+|-...|||++-.+ +-+|.... +.+.+. + .
T Consensus 78 I~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~q------------------K~V~K~-k--s 131 (1081)
T KOG1538|consen 78 IIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQ------------------KSVSKH-K--S 131 (1081)
T ss_pred EEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchhh--ccccChhh------------------hhHHhh-h--h
Confidence 99976432 2333 6999999999999999999999743 67888742 112221 1 2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 319 SATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 319 ~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
.++|.+.+|..||++||.|-.+|||.|=+
T Consensus 132 s~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 132 SSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred heeEEEeeecCCCcEEEEeccCceEEeec
Confidence 35799999999999999999999999864
No 203
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.26 E-value=2.1e-05 Score=84.94 Aligned_cols=195 Identities=14% Similarity=0.173 Sum_probs=119.0
Q ss_pred cCCeEEEEECCCCeE-EEEEE------cCCcEEEEEEcC----CEEEEEECCeEEEEECCCCceeEEEec-CCCcccCCC
Q 002778 59 SPTAVRFYSFQSHCY-EHVLR------FRSSVCMVRCSP----RIVAVGLATQIYCFDALTLENKFSVLT-YPVPQLAGQ 126 (882)
Q Consensus 59 sp~tVrlWDlkTG~~-V~tLk------f~s~V~sV~~S~----rlLAV~~d~qI~IWDa~T~e~l~tL~t-~p~p~~~~~ 126 (882)
.++.|.||++..+.. +..+. ++....+=+++| ..|++..+.++++||++|+++...+.. |..
T Consensus 142 ~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq------ 215 (370)
T KOG1007|consen 142 DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQ------ 215 (370)
T ss_pred ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcc------
Confidence 568899999988776 55543 223344455665 578888999999999999988777653 211
Q ss_pred CcccccccceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhcccccccccccc
Q 002778 127 GAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 206 (882)
Q Consensus 127 ~~~g~~~~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~ 206 (882)
....+ -|.++.-.
T Consensus 216 -------~vrdl-------DfNpnkq~----------------------------------------------------- 228 (370)
T KOG1007|consen 216 -------RVRDL-------DFNPNKQH----------------------------------------------------- 228 (370)
T ss_pred -------eeeec-------cCCCCceE-----------------------------------------------------
Confidence 01112 22221100
Q ss_pred ccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEE
Q 002778 207 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINI 284 (882)
Q Consensus 207 ~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrV 284 (882)
. ++ +++.||.|+|||...- ..+..+..|...|+++.|+|.- +++.|+|.|- .+.+
T Consensus 229 ------------------~--lv--t~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs-~V~L 285 (370)
T KOG1007|consen 229 ------------------I--LV--TCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDS-AVNL 285 (370)
T ss_pred ------------------E--EE--EcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCc-eeEE
Confidence 0 11 4567899999999754 5788999999999999999964 6778888855 4788
Q ss_pred EecCCCcccCC--CCCCcccc-----CCcccEEEE--EEe-cccCCcEEEEEEccCCCEEEE-EeCCCeEEEEECC
Q 002778 285 FRIMPSCMRSG--SGNHKYDW-----NSSHVHLYK--LHR-GITSATIQDICFSHYSQWIAI-VSSKGTCHVFVLS 349 (882)
Q Consensus 285 Wdi~p~~~~~~--sG~~~~d~-----sss~~~l~~--L~R-G~t~a~I~sLaFSPDg~~LAs-gS~DGTVhIWdI~ 349 (882)
|......+... .+....+. ....+.|.. |.+ ..+...|++++||.-.-|+.+ -|-||-+.|=.+.
T Consensus 286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 87642100000 00000000 000111111 000 112246999999988888655 5889999886654
No 204
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.26 E-value=5.9e-06 Score=96.19 Aligned_cols=119 Identities=17% Similarity=0.182 Sum_probs=78.8
Q ss_pred ccCCCceEEEEECCCCcEEEE--eccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcc-------cCCCCCCcc
Q 002778 232 DMDNAGIVVVKDFVTRAIISQ--FKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCM-------RSGSGNHKY 301 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~--f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~-------~~~sG~~~~ 301 (882)
++..|.++++||+.+.+++.. +.+|+..|.++||.|+. ..++||+.||. |.|||+.-.-. ....+.+..
T Consensus 117 sasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~-illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 117 SASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE-ILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred EccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCc-EEEEEEeccchhhHHHHhhhhhccccC
Confidence 346689999999999888766 89999999999999976 47789999875 89999853100 000011111
Q ss_pred ccCCcccEEEEEEecc-cCCcEEE---EEEccCCCEEEEEeC-CCeEEEEECCCC
Q 002778 302 DWNSSHVHLYKLHRGI-TSATIQD---ICFSHYSQWIAIVSS-KGTCHVFVLSPF 351 (882)
Q Consensus 302 d~sss~~~l~~L~RG~-t~a~I~s---LaFSPDg~~LAsgS~-DGTVhIWdI~~~ 351 (882)
....+.......+++. ....|.+ +.|.-|...||+++. |++|+||||...
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 0011111111122111 1124666 677788899999988 999999999864
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=9.4e-05 Score=85.09 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=61.9
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecc
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 317 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~ 317 (882)
.|.+||+.+++.. .+..+...+...+|+|||+.|+.++.++...+||.+... .| ...++...
T Consensus 268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-----~g-----------~~~~lt~~- 329 (429)
T PRK03629 268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-----GG-----------APQRITWE- 329 (429)
T ss_pred EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-----CC-----------CeEEeecC-
Confidence 5889999987654 444455677889999999999888765544677765321 01 11222211
Q ss_pred cCCcEEEEEEccCCCEEEEEeCC-C--eEEEEECCC
Q 002778 318 TSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLSP 350 (882)
Q Consensus 318 t~a~I~sLaFSPDg~~LAsgS~D-G--TVhIWdI~~ 350 (882)
.....+.+|||||++|+..+.+ + .+.+||+..
T Consensus 330 -~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 330 -GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred -CCCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 1235678999999999887654 3 466677754
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.24 E-value=1.2e-06 Score=100.18 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=72.3
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS 328 (882)
.+..+.--+.+|...+|+|||++||+-|.||. +||||... ++|.-+.+-. -+-..|++||
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt------------------~eLlg~mkSY-FGGLLCvcWS 341 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDT------------------QELLGVMKSY-FGGLLCVCWS 341 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccH------------------HHHHHHHHhh-ccceEEEEEc
Confidence 44444444568999999999999999999885 89999843 1221110100 0247899999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccC
Q 002778 329 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 371 (882)
Q Consensus 329 PDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp 371 (882)
|||+|||+|+.|--|.||.+....-...-++|.+=|....+-|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999986544444467764444444433
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.22 E-value=2.5e-06 Score=97.62 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=63.0
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
+....++++++++.++. .++||.+||+|+.+.+++..++.--+.+.|++|||||+++||++.|+ .+.||.+.
T Consensus 291 g~in~f~FS~DG~~LA~----VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~ 362 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLAT----VSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFE 362 (636)
T ss_pred ccccceeEcCCCceEEE----EecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEec
Confidence 33455777889999874 58999999999999999989988889999999999999999999976 79999995
No 208
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.21 E-value=1.2e-05 Score=88.26 Aligned_cols=103 Identities=12% Similarity=0.199 Sum_probs=74.3
Q ss_pred ccCCCceEEEEECCCCcEEE--EeccCC-CCeEEEEECCCCCEEEEEEcC---CCEEEEEecCCCcccCCCCCCccccCC
Q 002778 232 DMDNAGIVVVKDFVTRAIIS--QFKAHT-SPISALCFDPSGTLLVTASVY---GNNINIFRIMPSCMRSGSGNHKYDWNS 305 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~--~f~aH~-spIsaLaFSPdGtlLATAS~d---Gt~IrVWdi~p~~~~~~sG~~~~d~ss 305 (882)
+++.||+|++||+++....+ .+.+|. .|..+++.+-.+.+++++... .-.+.+||++...
T Consensus 89 s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q-------------- 154 (376)
T KOG1188|consen 89 SCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ-------------- 154 (376)
T ss_pred EeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc--------------
Confidence 35679999999999876544 445666 467777777788999988542 3357899996420
Q ss_pred cccEEEEEEecccCCcEEEEEEccC-CCEEEEEeCCCeEEEEECCCC
Q 002778 306 SHVHLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 306 s~~~l~~L~RG~t~a~I~sLaFSPD-g~~LAsgS~DGTVhIWdI~~~ 351 (882)
+.+..+... +...|++|.|.|. -..|++||.||-|.|||+...
T Consensus 155 --q~l~~~~eS-H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 155 --QLLRQLNES-HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred --chhhhhhhh-ccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 112223222 3357999999985 479999999999999999754
No 209
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.20 E-value=2.9e-06 Score=64.24 Aligned_cols=39 Identities=26% Similarity=0.629 Sum_probs=35.7
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 002778 247 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 286 (882)
Q Consensus 247 ~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWd 286 (882)
++++.+|++|..+|.+|+|+|++++|||++.|+ .|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~-~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDG-TIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTS-EEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCC-EEEEEC
Confidence 357889999999999999999999999999976 599997
No 210
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.19 E-value=4.7e-06 Score=88.94 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=51.4
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEec
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 287 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi 287 (882)
+++-||.||||.-.+++.++.++-|...|++|||+|+..++|.||.|++ |-+|++
T Consensus 268 TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL 322 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL 322 (323)
T ss_pred ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence 5678999999999999999999999999999999999999999999765 999986
No 211
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.18 E-value=4.4e-05 Score=89.82 Aligned_cols=236 Identities=16% Similarity=0.084 Sum_probs=131.9
Q ss_pred cCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--C---EEEE-EECCeEEEEECCCC--ceeEEEecCCCcccCCCCcc
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--R---IVAV-GLATQIYCFDALTL--ENKFSVLTYPVPQLAGQGAV 129 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--r---lLAV-~~d~qI~IWDa~T~--e~l~tL~t~p~p~~~~~~~~ 129 (882)
+...|.+||-.+-..+.++. |...|..+.+-+ + .+++ +.|++|.+|.++.- .+++++.+|..
T Consensus 32 a~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~--------- 102 (764)
T KOG1063|consen 32 AGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK--------- 102 (764)
T ss_pred CCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcce---------
Confidence 34678899988776666665 888888888653 3 3444 46889999998832 24455544332
Q ss_pred cccccceeeEEcC--cEE--EEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccc
Q 002778 130 GINVGYGPMAVGP--RWL--AYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 205 (882)
Q Consensus 130 g~~~~~g~lAlsp--R~L--Ayss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~ 205 (882)
...++.- ..+ +.++..+.+|+... ++--+.+....+. |.+--.|
T Consensus 103 ------~~~cv~a~~~~~~~~~ad~~v~vw~~~~-----------------~e~~~~~~~rf~~---------k~~ipLc 150 (764)
T KOG1063|consen 103 ------ECVCVVARSSVMTCKAADGTVSVWDKQQ-----------------DEVFLLAVLRFEI---------KEAIPLC 150 (764)
T ss_pred ------eEEEEEeeeeEEEeeccCceEEEeecCC-----------------Cceeeehheehhh---------hhHhhHH
Confidence 1222221 111 22445677787410 0000000000000 0000111
Q ss_pred cccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCC---EEEEEEcCCC
Q 002778 206 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGT---LLVTASVYGN 280 (882)
Q Consensus 206 ~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~--~~v~~f~aH~spIsaLaFSPdGt---lLATAS~dGt 280 (882)
...++ +. +...++ -|+.+..|.|+--.+. +.+..+.+|++.|..|+|...|. +|||+|. ++
T Consensus 151 L~~~~---------~~--~~~lla--~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ-D~ 216 (764)
T KOG1063|consen 151 LAALK---------NN--KTFLLA--CGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ-DR 216 (764)
T ss_pred Hhhhc---------cC--CcEEEE--ecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC-ce
Confidence 11111 11 111111 3455666777665533 56788999999999999998765 8888888 56
Q ss_pred EEEEEecCCCcccCC-----CCCCccccCCcccEEEE---------EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEE
Q 002778 281 NINIFRIMPSCMRSG-----SGNHKYDWNSSHVHLYK---------LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 346 (882)
Q Consensus 281 ~IrVWdi~p~~~~~~-----sG~~~~d~sss~~~l~~---------L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIW 346 (882)
.||||++...-..+. .-+...+ ......+.+ +.-||.+ .|+++-|+|++..|.++|.|.|+.||
T Consensus 217 yIRiW~i~~~~~~~~~~~e~~~t~~~~-~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW 294 (764)
T KOG1063|consen 217 YIRIWRIVLGDDEDSNEREDSLTTLSN-LPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIW 294 (764)
T ss_pred EEEEEEEEecCCccccccccccccccC-CceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEE
Confidence 799999865210000 0000000 001112211 2237664 79999999999999999999999999
Q ss_pred ECCCC
Q 002778 347 VLSPF 351 (882)
Q Consensus 347 dI~~~ 351 (882)
.-...
T Consensus 295 ~pd~~ 299 (764)
T KOG1063|consen 295 KPDEN 299 (764)
T ss_pred ecCCc
Confidence 76544
No 212
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.17 E-value=0.00037 Score=77.84 Aligned_cols=85 Identities=19% Similarity=0.353 Sum_probs=59.0
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEe
Q 002778 259 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 338 (882)
Q Consensus 259 pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS 338 (882)
....|+++|||++|..+......|-+|++.+. .| ....+..+..+ ...-+.++|+|||+||+++.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-----~g--------~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA-----TG--------TLTLVQTVPTG--GKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-----TT--------TEEEEEEEEES--SSSEEEEEE-TTSSEEEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecC-----CC--------ceEEEEEEeCC--CCCccEEEEeCCCCEEEEEe
Confidence 57889999999999888776677999999431 12 11223333221 12368999999999999887
Q ss_pred -CCCeEEEEECCCCCCccccc
Q 002778 339 -SKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 339 -~DGTVhIWdI~~~gg~~~l~ 358 (882)
.+++|.+|+++...|.....
T Consensus 311 ~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 311 QDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEE
T ss_pred cCCCeEEEEEEeCCCCcEEEe
Confidence 67799999998766655443
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.16 E-value=6e-07 Score=106.47 Aligned_cols=94 Identities=23% Similarity=0.386 Sum_probs=81.7
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|..|+||...+..+++..++|.+.|+.++.+...+++|+||. +.+|+||.+.+ | ..+.
T Consensus 207 tgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~-D~vIrvWrl~~-------~----------~pvs 268 (1113)
T KOG0644|consen 207 TGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN-DKVIRVWRLPD-------G----------APVS 268 (1113)
T ss_pred ecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc-CceEEEEecCC-------C----------chHH
Confidence 6788999999999999999999999999999999999999999998 56899999954 3 2333
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
. .||++.+ |++|+|||-- +++.|||+++||..
T Consensus 269 v-Lrghtga-vtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 269 V-LRGHTGA-VTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred H-Hhccccc-eeeeccCccc----cCCCCCceEecccc
Confidence 3 3788865 9999999954 88999999999976
No 214
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=3.2e-05 Score=84.15 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=83.6
Q ss_pred CCCccccccccccccCCCceEEEEECCCC----cEEEEeccCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEecCCCcc
Q 002778 219 PNSVWKVGRHAGADMDNAGIVVVKDFVTR----AIISQFKAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCM 292 (882)
Q Consensus 219 ~ss~~k~~~la~~tgs~dG~V~VWDl~s~----~~v~~f~aH~spIsaLaFSPd--GtlLATAS~dGt~IrVWdi~p~~~ 292 (882)
++..++..+ +++.|++|+|||..+. .+-...++|.+.|..+.|-+- |+.+|++|.|++ +.||.-.+. .
T Consensus 21 ~D~~GRRmA----tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt-v~iWEE~~~-~ 94 (361)
T KOG2445|consen 21 FDFYGRRMA----TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT-VSIWEEQEK-S 94 (361)
T ss_pred ecccCceee----eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc-eeeeeeccc-c
Confidence 344445443 5788999999997543 467889999999999999663 899999999776 899986421 0
Q ss_pred cCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccC--CCEEEEEeCCCeEEEEECCCCC
Q 002778 293 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 293 ~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPD--g~~LAsgS~DGTVhIWdI~~~g 352 (882)
....| -.| .+..+|. .....|++|.|.|- |-.||+++.||++|||..-...
T Consensus 95 ~~~~~---~~W----v~~ttl~--DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~ 147 (361)
T KOG2445|consen 95 EEAHG---RRW----VRRTTLV--DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM 147 (361)
T ss_pred ccccc---cee----EEEEEee--cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc
Confidence 00001 011 1222222 22347999999985 7889999999999999875443
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.13 E-value=0.00054 Score=75.11 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=77.7
Q ss_pred ccCCCce-EEEEECCCCcEEEEeccC--CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc-cC--CCCCCccc-c-
Q 002778 232 DMDNAGI-VVVKDFVTRAIISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-RS--GSGNHKYD-W- 303 (882)
Q Consensus 232 tgs~dG~-V~VWDl~s~~~v~~f~aH--~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~-~~--~sG~~~~d-~- 303 (882)
+++..|+ |||||..+|+.+..|+-- ...|.+|+|||++.+||.+|.+|| ++||.+.+... .. .+-. ... |
T Consensus 198 TaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~-~~~~~l 275 (346)
T KOG2111|consen 198 TASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLS-FKRLVL 275 (346)
T ss_pred EeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCcccccccc-cccccc
Confidence 5566776 699999999999999843 346999999999999999999887 89999976321 00 0000 000 0
Q ss_pred ---CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 304 ---NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 304 ---sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
-++.+-+.+++- ......-++|-.+.+-+++...||+-+=+.+.+.
T Consensus 276 pky~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 276 PKYFSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred chhcccceeEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 001122233321 1224556789888778888888999887777665
No 216
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=3.9e-05 Score=93.47 Aligned_cols=105 Identities=14% Similarity=0.188 Sum_probs=73.7
Q ss_pred ccCCCceEEEEECCCCc--EEEEeccCC--C-CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 232 DMDNAGIVVVKDFVTRA--IISQFKAHT--S-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~--~v~~f~aH~--s-pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
+|+++|.|++||+.... ..-++..|. + .+++|..++...++|+|+. ..|+||++. |.....
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~--q~ikIy~~~--------G~~l~~---- 1339 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA--QLIKIYSLS--------GEQLNI---- 1339 (1387)
T ss_pred eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc--ceEEEEecC--------hhhhcc----
Confidence 46789999999998732 223344554 3 5999999999999999997 469999985 310000
Q ss_pred ccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 307 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 307 ~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.+-+...-|.....+.+++|.|.--.||+|+.|.+|-||...+.
T Consensus 1340 -~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 -IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred -cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 00011111222235789999999999999999999999987654
No 217
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.00029 Score=81.65 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=59.2
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-ec
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RG 316 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~-RG 316 (882)
.|.++|+.+++. ..+..|.......+|+|||+.|+..+..+....||.+... .| ...++. .+
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-----~g-----------~~~~Lt~~g 349 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-----SG-----------KVSRLTFEG 349 (448)
T ss_pred EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CC-----------CEEEEecCC
Confidence 477888887754 4555565566778999999988877654333455544221 02 122221 12
Q ss_pred ccCCcEEEEEEccCCCEEEEEeC-CCeEEEEECCCCCC
Q 002778 317 ITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGG 353 (882)
Q Consensus 317 ~t~a~I~sLaFSPDg~~LAsgS~-DGTVhIWdI~~~gg 353 (882)
. .....+|||||++|+..+. ++..+||-++..++
T Consensus 350 ~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 350 E---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred C---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 1 2345799999999988765 45667765554333
No 218
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=0.0002 Score=76.11 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=54.5
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEE---cCCEEEEEECCeEEEEECCCCceeEEEecCCCccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRC---SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQL 123 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~---S~rlLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~ 123 (882)
+..+.-||+++|+..++++ |.+-|.+|.. ++++|..+-|++++|||.+|.++..++.-+.+|..
T Consensus 135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~ 202 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL 202 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhh
Confidence 5788889999999999998 8888988877 35777777889999999999999999987766543
No 219
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.06 E-value=0.00022 Score=85.88 Aligned_cols=106 Identities=19% Similarity=0.264 Sum_probs=81.6
Q ss_pred ccCCCceEEEEECCC--C--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 002778 232 DMDNAGIVVVKDFVT--R--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s--~--~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
+++.||.|.||.--. + .....|.=|..+|.+|+|++||.+|.||+..| .+-+|.+.+ + ..
T Consensus 222 a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~-VLv~Wq~~T-------~--------~k 285 (792)
T KOG1963|consen 222 AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG-VLVLWQLET-------G--------KK 285 (792)
T ss_pred EeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce-EEEEEeecC-------C--------Cc
Confidence 568899999997433 2 23466778999999999999999999999976 678999964 2 11
Q ss_pred cEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccc
Q 002778 308 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~ 358 (882)
+.|-+| .++|..+.+|||+.+.+....|+.||+-.........++.
T Consensus 286 qfLPRL-----gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs 331 (792)
T KOG1963|consen 286 QFLPRL-----GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS 331 (792)
T ss_pred cccccc-----CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc
Confidence 222222 3689999999999999999999999998876655444443
No 220
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.04 E-value=0.00033 Score=78.84 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=54.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt--~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
.|.++|+.+++. ..+..+...+..++|+|+|++|+.++.++. .|.+||+.. + ....+..
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-------~-----------~~~~l~~ 363 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-------G-----------GERVLTD 363 (417)
T ss_pred eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-------C-----------CeEEccC
Confidence 467777776653 344445566778899999999998876542 366667642 1 1222221
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCeEE
Q 002778 316 GITSATIQDICFSHYSQWIAIVSSKGTCH 344 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsgS~DGTVh 344 (882)
+ ......+|+|||++|+..+.++...
T Consensus 364 ~---~~~~~p~~spdg~~l~~~~~~~~~~ 389 (417)
T TIGR02800 364 T---GLDESPSFAPNGRMILYATTRGGRG 389 (417)
T ss_pred C---CCCCCceECCCCCEEEEEEeCCCcE
Confidence 1 1234578999999999888766433
No 221
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=0.00023 Score=87.15 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=75.7
Q ss_pred cCCCceEEEEECCCC---cEEEEeccCCCC--eEEEEECCCCCE-EEEEEcCCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 233 MDNAGIVVVKDFVTR---AIISQFKAHTSP--ISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 233 gs~dG~V~VWDl~s~---~~v~~f~aH~sp--IsaLaFSPdGtl-LATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
|-.||.|++||...- ..+...+.|+.. |..+.|.+.|-- |++||.+|. |++||+...+..+.
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~----------- 1294 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETF----------- 1294 (1387)
T ss_pred eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCccccc-----------
Confidence 567999999998753 357788899988 999999998865 999999886 99999975210000
Q ss_pred ccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 307 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 307 ~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
....+...-|. ..+++...++...||+|+. +.|.||++.
T Consensus 1295 ~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1295 LTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred ceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 01112111131 3788999999999999999 999999986
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=5.7e-05 Score=83.67 Aligned_cols=77 Identities=19% Similarity=0.348 Sum_probs=61.9
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCE
Q 002778 254 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 333 (882)
Q Consensus 254 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~ 333 (882)
.+| -+|++|++++||+.|+|||.++..|+|||... |+ ...+. .+|. ..+.-|.||||+.|
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-------g~--------~~pL~--~~gl--gg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-------GQ--------KIPLI--PKGL--GGFSLLKWSPDGDV 252 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-------CC--------ccccc--ccCC--CceeeEEEcCCCCE
Confidence 456 69999999999999999999888999999864 21 12333 2332 24788999999999
Q ss_pred EEEEeCCCeEEEEECCC
Q 002778 334 IAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 334 LAsgS~DGTVhIWdI~~ 350 (882)
|.+++-|++.+||..+.
T Consensus 253 lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQ 269 (445)
T ss_pred EEEecccceeeeehhcc
Confidence 99999999999997653
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.00 E-value=0.00011 Score=86.05 Aligned_cols=242 Identities=16% Similarity=0.139 Sum_probs=133.7
Q ss_pred ccCCeEEEEECCCCeEEEEEE-cCCcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEe-cCCCcccCCCCccccc
Q 002778 58 NSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGIN 132 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~-t~p~p~~~~~~~~g~~ 132 (882)
..+..+.+||...|....+|+ |.+.|+.|++++ +++|+|. |..|.+|.-. ..-+|+ .|..
T Consensus 30 AAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D------------ 94 (1081)
T KOG1538|consen 30 AAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHND------------ 94 (1081)
T ss_pred ecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCC------------
Confidence 467889999999999999999 999999999975 7888875 5679999743 222222 1222
Q ss_pred ccceeeEEcC--cEEEEeC-CCeEeccCCCCCCccCCC--CCC-CCCcCCCCCccEEEeeccchhhhhccccccccccc-
Q 002778 133 VGYGPMAVGP--RWLAYAS-NTLLLSNSGRLSPQNLTP--SGV-SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC- 205 (882)
Q Consensus 133 ~~~g~lAlsp--R~LAyss-~~v~lwdtG~vs~q~lt~--~~v-s~s~SP~~GslVA~~A~essk~la~GliktLs~~~- 205 (882)
....|.|.| ..||..+ +..-+|....-..+.... ... -.++ .+|...+....+....+ ..+.....
T Consensus 95 -~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWt--nDGqylalG~~nGTIsi----RNk~gEek~ 167 (1081)
T KOG1538|consen 95 -AIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWT--NDGQYLALGMFNGTISI----RNKNGEEKV 167 (1081)
T ss_pred -eeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeec--CCCcEEEEeccCceEEe----ecCCCCcce
Confidence 135677777 4555433 344566532111110000 000 0111 12333322221111000 00000000
Q ss_pred cccCCCCCCCCc---cCCCccccccccccccCCCceEEEEECC--------CCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 002778 206 QELLPDGSSSPV---SPNSVWKVGRHAGADMDNAGIVVVKDFV--------TRAIISQFKAHTSPISALCFDPSGTLLVT 274 (882)
Q Consensus 206 ~~l~pdgs~s~~---S~ss~~k~~~la~~tgs~dG~V~VWDl~--------s~~~v~~f~aH~spIsaLaFSPdGtlLAT 274 (882)
.--.|+|.++++ ..+|... -+.+-++-|-|-. +|+.+..=++-.-.-.|+.+-|+|.++..
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg--------~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSG--------EGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCC--------CCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE
Confidence 001245554442 1222111 1223344444432 23333322222233357888899999999
Q ss_pred EEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 275 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 275 AS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
|+.++. +++|--. | ..+-++ |.....||+++..|+|++++.|+-|||+--|++..
T Consensus 240 GGsdk~-L~~fTR~--------G----------vrLGTv--g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 240 GGSDKQ-LSLFTRD--------G----------VRLGTV--GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ccCCCc-eEEEeec--------C----------eEEeec--cccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 988665 7888653 3 455554 33445899999999999999999999999999853
No 224
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.00081 Score=77.98 Aligned_cols=51 Identities=24% Similarity=0.243 Sum_probs=34.5
Q ss_pred CeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEE--CC--eEEEEECCCCce
Q 002778 61 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--AT--QIYCFDALTLEN 111 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~--d~--qI~IWDa~T~e~ 111 (882)
..|.+||+.+|+......++....+.++++ +.|+.+. ++ +|++||+.+++.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 368899999987644334555556778876 5566543 23 499999988764
No 225
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.97 E-value=7.7e-05 Score=83.54 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=65.4
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS 328 (882)
..+.+++|...|..|+|+|++.+|++++.| ..+++||+.. | .+....-++ ..-++.++|-
T Consensus 115 v~k~lr~h~~diydL~Ws~d~~~l~s~s~d-ns~~l~Dv~~-------G-----------~l~~~~~dh-~~yvqgvawD 174 (434)
T KOG1009|consen 115 VKKVLRGHRDDIYDLAWSPDSNFLVSGSVD-NSVRLWDVHA-------G-----------QLLAILDDH-EHYVQGVAWD 174 (434)
T ss_pred EEEEecccccchhhhhccCCCceeeeeecc-ceEEEEEecc-------c-----------eeEeecccc-ccccceeecc
Confidence 456778899999999999999999999995 5699999964 3 333332233 3469999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCC
Q 002778 329 HYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 329 PDg~~LAsgS~DGTVhIWdI~~ 350 (882)
|-++++++=|.|...+++.+..
T Consensus 175 pl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 175 PLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred hhhhhhhhhccCcccceeeeee
Confidence 9999999999998777777754
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.96 E-value=0.0016 Score=74.04 Aligned_cols=178 Identities=14% Similarity=0.092 Sum_probs=110.8
Q ss_pred CCeEEEEECCCCeEEEEEEcCCcEE-EEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVC-MVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 135 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~V~-sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~ 135 (882)
.+.|.|.|..+++.+.++.....+. .+.+++ +++.|+. ++.|.++|+.+++.+.++.....|
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~-------------- 80 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP-------------- 80 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE--------------
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc--------------
Confidence 5789999999999999998655554 466776 6666654 778999999999999888643221
Q ss_pred eeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 136 GPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 136 g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
..+++++ ++|+.
T Consensus 81 ~~i~~s~DG~~~~v------------------------------------------------------------------ 94 (369)
T PF02239_consen 81 RGIAVSPDGKYVYV------------------------------------------------------------------ 94 (369)
T ss_dssp EEEEE--TTTEEEE------------------------------------------------------------------
T ss_pred ceEEEcCCCCEEEE------------------------------------------------------------------
Confidence 1233322 22210
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccC-------CCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-------TSPISALCFDPSGTLLVTASVYGNNINIFR 286 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH-------~spIsaLaFSPdGtlLATAS~dGt~IrVWd 286 (882)
....++.|.|+|..+.+.++++... ...+.+|..+|....++.+-.+...|-+-|
T Consensus 95 ------------------~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 95 ------------------ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp ------------------EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred ------------------EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 0123578999999999999888654 346789999999997777766555455556
Q ss_pred cCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEE-eCCCeEEEEECCCCCC
Q 002778 287 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFGG 353 (882)
Q Consensus 287 i~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsg-S~DGTVhIWdI~~~gg 353 (882)
..+. .......+..| ....+..|+||++|+.++ ..+..+-++|..+.+.
T Consensus 157 y~d~---------------~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 157 YSDP---------------KNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp TTTS---------------SCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred eccc---------------cccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceE
Confidence 5321 00122333323 247899999999987664 5677899999876543
No 227
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.95 E-value=0.00094 Score=76.26 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=58.1
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt--~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
..|.+||+.+++. ..+..+........|+|||+.|+..+..+. .|.++++.. | ....+ .+
T Consensus 267 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-------g--------~~~~l-t~- 328 (430)
T PRK00178 267 PEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-------G--------RAERV-TF- 328 (430)
T ss_pred ceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-------C--------CEEEe-ec-
Confidence 4688899998764 445556666667899999998877665432 344455532 2 01111 11
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCC-C--eEEEEECCC
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLSP 350 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~D-G--TVhIWdI~~ 350 (882)
.+ ......+|||||++|+..+.+ + .+.+||+..
T Consensus 329 ~~---~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 329 VG---NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CC---CCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 12 123457899999999988754 3 366667654
No 228
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.00092 Score=77.19 Aligned_cols=77 Identities=21% Similarity=0.128 Sum_probs=47.4
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEe
Q 002778 259 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 338 (882)
Q Consensus 259 pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS 338 (882)
.....+|+|||+.||..+..+...+||.+... +.+ .....+..+ ...+...+|||||++|+..+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~----~~g----------~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID----PEG----------QSPRLLTKK--YRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECc----ccc----------cceEEeccC--CCCccceeECCCCCEEEEEE
Confidence 34567999999988877743333567765210 001 012222111 12467899999999999876
Q ss_pred CC---CeEEEEECCCC
Q 002778 339 SK---GTCHVFVLSPF 351 (882)
Q Consensus 339 ~D---GTVhIWdI~~~ 351 (882)
.+ ..|++||+...
T Consensus 346 ~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 346 VIKGVRQICVYDLATG 361 (428)
T ss_pred cCCCCcEEEEEECCCC
Confidence 54 35888888643
No 229
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=2.2e-05 Score=90.27 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=70.4
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS 328 (882)
..+.|.+|++-|++|+|+.+|.+||+||.| +.+.|||.-. ++.+..+..||+ +.|.++.|=
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD-~r~ivWd~~~-----------------~KllhsI~TgHt-aNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDD-TRLIVWDPFE-----------------YKLLHSISTGHT-ANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCc-ceEEeecchh-----------------cceeeeeecccc-cceeEEeee
Confidence 346788999999999999999999999984 5588999732 256777778877 579999999
Q ss_pred cC--CCEEEEEeCCCeEEEEECCC
Q 002778 329 HY--SQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 329 PD--g~~LAsgS~DGTVhIWdI~~ 350 (882)
|. .+.|++|..|..|||||++.
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccCCCeEEEeccCcceEEEEeccc
Confidence 85 57899999999999999985
No 230
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.92 E-value=3.9e-05 Score=88.07 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=61.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+|+.|-..+|||.. |+.+-.-.+|..||++++|+|+ ++.|.+|. ++.|+ .- |
T Consensus 203 sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~--nt~R~-~~-p---------------------- 254 (737)
T KOG1524|consen 203 SGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY--NTARF-SS-P---------------------- 254 (737)
T ss_pred ecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee--eeeee-cC-C----------------------
Confidence 67889999999986 6677777899999999999999 88887775 23441 11 1
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeE
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTC 343 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTV 343 (882)
....|..|+||+||.-++.|+..|-+
T Consensus 255 ------~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 255 ------RVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred ------CccceEEEEEcCCCceeeccccCceE
Confidence 11358999999999999999988864
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.91 E-value=0.00019 Score=87.75 Aligned_cols=106 Identities=19% Similarity=0.158 Sum_probs=78.9
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
|..-|.|.+|+...-+.-..+.+|.+.|-++.|+-||+++||+|.| +.||+|++.+.. .+--
T Consensus 151 gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdD-RsiRlW~i~s~~-----------------~~~~ 212 (967)
T KOG0974|consen 151 GSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDD-RSIRLWPIDSRE-----------------VLGC 212 (967)
T ss_pred ccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecC-cceeeeeccccc-----------------ccCc
Confidence 4456789999987433334689999999999999999999999985 569999997521 1110
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccc
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 360 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H 360 (882)
.-.|| .++|+.++|.|. .|++++.|-|+++|+.+-. ....+..|
T Consensus 213 ~~fgH-saRvw~~~~~~n--~i~t~gedctcrvW~~~~~-~l~~y~~h 256 (967)
T KOG0974|consen 213 TGFGH-SARVWACCFLPN--RIITVGEDCTCRVWGVNGT-QLEVYDEH 256 (967)
T ss_pred ccccc-cceeEEEEeccc--eeEEeccceEEEEEecccc-eehhhhhh
Confidence 11254 478999999998 9999999999999966432 22244455
No 232
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.89 E-value=0.00016 Score=88.39 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=80.4
Q ss_pred cCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 233 MDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~-~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
.+.|.++++|++.+.+.+. +.-+|+..|+.++|.|+ +|+|++.|- +.|+|+.. + ..+.
T Consensus 193 ~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedc-tcrvW~~~--------~----------~~l~ 251 (967)
T KOG0974|consen 193 VSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDC-TCRVWGVN--------G----------TQLE 251 (967)
T ss_pred EecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccce-EEEEEecc--------c----------ceeh
Confidence 4678899999999988765 66789999999999999 999999965 58999874 2 1222
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+ .+++-...|+.++-.++.-+++++..|+++++|++...+..
T Consensus 252 ~-y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 252 V-YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred h-hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 2 23444456999999999999999999999999999765543
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.87 E-value=0.00012 Score=82.92 Aligned_cols=104 Identities=19% Similarity=0.306 Sum_probs=75.9
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
..+|.|.|.|..+.+.+..|.....+-..++|+|||++|..++.+| .|.++|+.. + +.+.++
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg-~vsviD~~~-------~----------~~v~~i 74 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDG-TVSVIDLAT-------G----------KVVATI 74 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTS-EEEEEETTS-------S----------SEEEEE
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCC-eEEEEECCc-------c----------cEEEEE
Confidence 3478999999999999999987655545688999999999999877 589999964 2 466777
Q ss_pred EecccCCcEEEEEEccCCCEEEEEe-CCCeEEEEECCCCCCccccc
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS-~DGTVhIWdI~~~gg~~~l~ 358 (882)
+-|. .-.++++|+||+||+++. ..+++.|+|..+..-...+.
T Consensus 75 ~~G~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 75 KVGG---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp E-SS---EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred ecCC---CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 6564 358899999999999886 68999999998765544443
No 234
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00056 Score=79.38 Aligned_cols=129 Identities=22% Similarity=0.260 Sum_probs=90.0
Q ss_pred CCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEE---CCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~---d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
-+++.++++...+++-.|.-.++|++|.+++ +-.+|+. -..+-|||++ +..++.+.+.|.
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~egpR-------------- 314 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEGPR-------------- 314 (566)
T ss_pred cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCCCc--------------
Confidence 4789999998666776677789999999986 4466654 3579999986 355555533221
Q ss_pred ceeeEEcC--cEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCC
Q 002778 135 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 212 (882)
Q Consensus 135 ~g~lAlsp--R~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdg 212 (882)
+.+-++| ++|+.++
T Consensus 315 -N~~~fnp~g~ii~lAG--------------------------------------------------------------- 330 (566)
T KOG2315|consen 315 -NTAFFNPHGNIILLAG--------------------------------------------------------------- 330 (566)
T ss_pred -cceEECCCCCEEEEee---------------------------------------------------------------
Confidence 2333333 2222211
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCEEEEEec
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFRI 287 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d-----Gt~IrVWdi 287 (882)
-|.-.|.|.|||+.+.+.+..+.+-... -..|+|||.++.||..- ++-|+||+.
T Consensus 331 -------------------FGNL~G~mEvwDv~n~K~i~~~~a~~tt--~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 331 -------------------FGNLPGDMEVWDVPNRKLIAKFKAANTT--VFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred -------------------cCCCCCceEEEeccchhhccccccCCce--EEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 1234688999999999999999886554 47899999999998763 445899998
Q ss_pred C
Q 002778 288 M 288 (882)
Q Consensus 288 ~ 288 (882)
.
T Consensus 390 t 390 (566)
T KOG2315|consen 390 T 390 (566)
T ss_pred c
Confidence 3
No 235
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.0019 Score=74.57 Aligned_cols=81 Identities=14% Similarity=0.195 Sum_probs=51.7
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEE
Q 002778 250 ISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 327 (882)
Q Consensus 250 v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaF 327 (882)
...+..+...+...+|||||++||..+.++ ..|.+||+.. | ....+..+ ...+.+.+|
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-------g-----------~~~~Lt~~--~~~~~~p~w 378 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-------G-----------RDYQLTTS--PENKESPSW 378 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-------C-----------CeEEccCC--CCCccceEE
Confidence 344444555677889999999998766432 3588888853 2 22233222 124678999
Q ss_pred ccCCCEEEEEeC-CC--eEEEEECCC
Q 002778 328 SHYSQWIAIVSS-KG--TCHVFVLSP 350 (882)
Q Consensus 328 SPDg~~LAsgS~-DG--TVhIWdI~~ 350 (882)
||||++|+..+. ++ .+.+|++..
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCC
Confidence 999999986543 33 455666643
No 236
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.77 E-value=6.2e-05 Score=85.41 Aligned_cols=220 Identities=20% Similarity=0.261 Sum_probs=138.2
Q ss_pred CeEEEEECCCCeEEEEEEcCCcEEEEEEcC-C-EEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCccccccccee
Q 002778 61 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-R-IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 137 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~-r-lLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~ 137 (882)
+-+.||| ..|.++|.|+-...|..+.|-| . +||++. .+.++--|+.+|+.+..+.+...+ ...
T Consensus 191 ~y~yvYD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~-------------~~v 256 (545)
T KOG1272|consen 191 KYVYVYD-NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR-------------TDV 256 (545)
T ss_pred ceEEEec-CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCc-------------cch
Confidence 6788888 5799999999888999999988 3 444443 456888899999988777653221 123
Q ss_pred eEEcC-cEEE-E--eCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 138 MAVGP-RWLA-Y--ASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 138 lAlsp-R~LA-y--ss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
|.-.| +-+. . +..++.+|.- ..-.. |+ |-| | .-+.
T Consensus 257 m~qNP~NaVih~GhsnGtVSlWSP-------------------~skeP-----------Lv----KiL---c----H~g~ 295 (545)
T KOG1272|consen 257 MKQNPYNAVIHLGHSNGTVSLWSP-------------------NSKEP-----------LV----KIL---C----HRGP 295 (545)
T ss_pred hhcCCccceEEEcCCCceEEecCC-------------------CCcch-----------HH----HHH---h----cCCC
Confidence 33333 1121 1 2235666641 11000 00 000 1 1122
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 293 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~ 293 (882)
.+++..++++.+.+ |.+.|..|+|||+..-..+.++.. ..+...++||..|.+ | +|. |..+.||.=.-
T Consensus 296 V~siAv~~~G~YMa----TtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglL-A-~~~-G~~v~iw~d~~---- 363 (545)
T KOG1272|consen 296 VSSIAVDRGGRYMA----TTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLL-A-LSY-GDHVQIWKDAL---- 363 (545)
T ss_pred cceEEECCCCcEEe----ecccccceeEeeeccccccceeec-CCCccccccccccce-e-eec-CCeeeeehhhh----
Confidence 34555666677765 557899999999998765555544 467889999998843 3 344 56799997532
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcccccc
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 359 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~ 359 (882)
++++ .....|--++ ....|.+|.|.|-...|.+|...|-.-| |-|+.|.+++.+
T Consensus 364 ~~s~--------~~~~pYm~H~--~~~~V~~l~FcP~EDvLGIGH~~G~tsi--lVPGsGePN~Ds 417 (545)
T KOG1272|consen 364 KGSG--------HGETPYMNHR--CGGPVEDLRFCPYEDVLGIGHAGGITSI--LVPGSGEPNYDS 417 (545)
T ss_pred cCCC--------CCCcchhhhc--cCcccccceeccHHHeeeccccCCceeE--eccCCCCCCcch
Confidence 1111 1122232222 2347999999999999999999997777 567777776643
No 237
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.0062 Score=67.99 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=58.9
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC-cEEEEEEccCCCEEEE
Q 002778 258 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAI 336 (882)
Q Consensus 258 spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a-~I~sLaFSPDg~~LAs 336 (882)
....+|..+|||++|-.+-..-..|-+|.+.+. + .+|.-+.+-.+.. .-++..|++++++|++
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~------~----------g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD------G----------GKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCC------C----------CEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 467899999999999876554446889999763 2 1332222222222 2578999999999998
Q ss_pred EeCC-CeEEEEECCCCCCcccc
Q 002778 337 VSSK-GTCHVFVLSPFGGDSGF 357 (882)
Q Consensus 337 gS~D-GTVhIWdI~~~gg~~~l 357 (882)
+..+ .+++||.+++..|..++
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EccCCCcEEEEEEcCCCceEEe
Confidence 8754 57999999987766544
No 238
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.0098 Score=66.44 Aligned_cols=119 Identities=21% Similarity=0.291 Sum_probs=77.6
Q ss_pred ccCCCccccccccccccCCCceEEEEECCC-CcE--EEEeccCCCC----------eEEEEECCCCCEEEEEEcCCCEEE
Q 002778 217 VSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAI--ISQFKAHTSP----------ISALCFDPSGTLLVTASVYGNNIN 283 (882)
Q Consensus 217 ~S~ss~~k~~~la~~tgs~dG~V~VWDl~s-~~~--v~~f~aH~sp----------IsaLaFSPdGtlLATAS~dGt~Ir 283 (882)
++.+.+++.+..+. -..|.|.|+-+.. |.+ +..+..|+.+ +-+..|+|+|++|++.+..-..|.
T Consensus 94 vsvd~~g~~vf~An---Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 94 VSVDEDGRFVFVAN---YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred EEECCCCCEEEEEE---ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 34444454433221 3358888888855 432 2344456666 888999999999999987544699
Q ss_pred EEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEe-CCCeEEEEECCCCCCc
Q 002778 284 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGD 354 (882)
Q Consensus 284 VWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS-~DGTVhIWdI~~~gg~ 354 (882)
+|++.. |. .. ....+.+.-| +--+-|+|+|++++.-..+ .++||-+|..++..+.
T Consensus 171 ~y~~~d-------g~----L~--~~~~~~v~~G---~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 171 LYDLDD-------GK----LT--PADPAEVKPG---AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred EEEccc-------Cc----cc--cccccccCCC---CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 999964 21 00 0112223333 2347799999999987665 6999999999986443
No 239
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=0.00019 Score=82.92 Aligned_cols=167 Identities=14% Similarity=0.220 Sum_probs=111.6
Q ss_pred cCCcEEEEEEcC--CEEEEEECC-eEEEEECCCCceeEEEec-CCCcccCCCCcccccccceeeEEcCcEEEEeCCCeEe
Q 002778 79 FRSSVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLL 154 (882)
Q Consensus 79 f~s~V~sV~~S~--rlLAV~~d~-qI~IWDa~T~e~l~tL~t-~p~p~~~~~~~~g~~~~~g~lAlspR~LAyss~~v~l 154 (882)
|.+-|..+.++. .+|++|.|+ +|.|||...-++++.+.| |.. +. |+-++|-|+++.+++
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHta---------------NI--FsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTA---------------NI--FSVKFVPYTNNRIVL 111 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccc---------------ce--eEEeeeccCCCeEEE
Confidence 788899999974 799998765 699999998888998876 322 12 222555554443222
Q ss_pred ccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCccCCCccccccccccccC
Q 002778 155 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 234 (882)
Q Consensus 155 wdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S~ss~~k~~~la~~tgs 234 (882)
+|.
T Consensus 112 -----------------------------------------------------------------------------sgA 114 (758)
T KOG1310|consen 112 -----------------------------------------------------------------------------SGA 114 (758)
T ss_pred -----------------------------------------------------------------------------ecc
Confidence 234
Q ss_pred CCceEEEEECCC----------CcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc
Q 002778 235 NAGIVVVKDFVT----------RAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 235 ~dG~V~VWDl~s----------~~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ 303 (882)
.|..|+|+|+.. ......+..|+..|-.|+--|+| ..+-+||.||+ ||-+|+...-..+-.+.
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~----- 188 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDED----- 188 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCcccc-----
Confidence 466788888764 23445667899999999999999 78889999886 99999964211111110
Q ss_pred CCcccEEEEEEecccCCcEEEEEEccCC-CEEEEEeCCCeEEEEECC
Q 002778 304 NSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 304 sss~~~l~~L~RG~t~a~I~sLaFSPDg-~~LAsgS~DGTVhIWdI~ 349 (882)
-...+..+. + .--...++..||.. .+||+|++|--++|||+.
T Consensus 189 --~~~~l~ny~-~-~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 189 --CPSILVNYN-P-QLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred --ccHHHHHhc-h-hhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 000010000 0 00136789999864 689999999999999964
No 240
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.64 E-value=0.00053 Score=75.44 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=65.4
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE--EEEE-----ecCCCcccCCCCCCccccCC
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN--INIF-----RIMPSCMRSGSGNHKYDWNS 305 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~--IrVW-----di~p~~~~~~sG~~~~d~ss 305 (882)
...+-.|.||.+.+.+.. .++--...+..++|+|||++.|.++..+-. ++|+ .+..++..+.....+..|+.
T Consensus 110 seF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP 188 (447)
T KOG4497|consen 110 SEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP 188 (447)
T ss_pred ecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC
Confidence 356778999999876543 333233456788999999999888763210 1111 11000000000001122322
Q ss_pred cc-----------cEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 306 SH-----------VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 306 s~-----------~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
.. -.+|..+||. .|..++|||.+++||+|+.|+.+||-+
T Consensus 189 dg~~laVwd~~Leykv~aYe~~l---G~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 189 DGNWLAVWDNVLEYKVYAYERGL---GLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred CCcEEEEecchhhheeeeeeecc---ceeEEEeccccceEEeeccchhhhhhc
Confidence 21 2344455664 388999999999999999999999854
No 241
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.54 E-value=0.00034 Score=52.79 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=31.5
Q ss_pred EEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 309 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
.+..+ +|+. ..|++|+|+|++++|++++.|++|+|||
T Consensus 3 ~~~~~-~~h~-~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTF-RGHS-SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEE-ESSS-SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEE-cCCC-CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 44555 4654 5799999999999999999999999997
No 242
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.0089 Score=70.00 Aligned_cols=97 Identities=21% Similarity=0.361 Sum_probs=76.9
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.|++|..|+...++.++.+++-+..+.+++.+|||..|++||. .|++||+.+ + ..+.
T Consensus 119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~-------k----------evv~ 178 (541)
T KOG4547|consen 119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIET-------K----------EVVI 178 (541)
T ss_pred ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccC-------c----------eEEE
Confidence 3467899999999999999999999999999999999999999995 599999975 2 2344
Q ss_pred EEEecccCCcEEEEEEccC-----CCEEEEE-eCCCeEEEEECCC
Q 002778 312 KLHRGITSATIQDICFSHY-----SQWIAIV-SSKGTCHVFVLSP 350 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPD-----g~~LAsg-S~DGTVhIWdI~~ 350 (882)
+| .|| ..+|.+++|--+ |.++.++ -...-+-+|-+..
T Consensus 179 ~f-tgh-~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 179 TF-TGH-GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Ee-cCC-CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 44 565 468999999888 6666554 3444477887764
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.002 Score=75.12 Aligned_cols=126 Identities=16% Similarity=0.253 Sum_probs=87.6
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEec
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 316 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG 316 (882)
-.|.=+++..|+.+.-|..-..+|+++..++--.|||+|..+|. +..||-..- +--| ..+...+ +-....+
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~-VEfwDpR~k---srv~--~l~~~~~---v~s~pg~ 225 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV-VEFWDPRDK---SRVG--TLDAASS---VNSHPGG 225 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCce-EEEecchhh---hhhe--eeecccc---cCCCccc
Confidence 45667788899999999888899999999999999999998775 899997531 1001 0000000 0000011
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCCCCCcccCCCCCCcc
Q 002778 317 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWW 378 (882)
Q Consensus 317 ~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~~~lpw~ 378 (882)
.....|++|+|+.||-.+++|++.|.|.||||... .+.-+..|. +-.|+..|-|-
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-~pl~~kdh~------~e~pi~~l~~~ 280 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-KPLLVKDHG------YELPIKKLDWQ 280 (703)
T ss_pred cccCcceEEEecCCceeEEeeccCCcEEEEEcccC-CceeecccC------Cccceeeeccc
Confidence 11235999999999999999999999999999864 344456665 45566666553
No 244
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.44 E-value=0.019 Score=66.41 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=36.8
Q ss_pred CeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEEC----CeEEEEECCCCc
Q 002778 61 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLE 110 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~d----~qI~IWDa~T~e 110 (882)
..|.++|+.+|+......+++.+...++++ +.|+...+ .+|+++|+.+++
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 468899999998766666777777777876 46665443 469999988776
No 245
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.43 E-value=0.0014 Score=72.27 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=101.2
Q ss_pred cCCeEEEEEC-CCCeEEEEE---Ec-----CCcEEEEEEcC---CEEEEEEC-CeEEEEECCCCceeEEEecCCCcccCC
Q 002778 59 SPTAVRFYSF-QSHCYEHVL---RF-----RSSVCMVRCSP---RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAG 125 (882)
Q Consensus 59 sp~tVrlWDl-kTG~~V~tL---kf-----~s~V~sV~~S~---rlLAV~~d-~qI~IWDa~T~e~l~tL~t~p~p~~~~ 125 (882)
..+.||++|+ +.|+--..+ .+ .+-|..++|+| ..+|++.. +++-||.-..+..++.+-+|..
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g----- 251 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG----- 251 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCC-----
Confidence 4489999999 777632222 12 34567788887 68899764 4555555556777777766544
Q ss_pred CCcccccccceeeEEcC--cEEEEe----CCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccc
Q 002778 126 QGAVGINVGYGPMAVGP--RWLAYA----SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 199 (882)
Q Consensus 126 ~~~~g~~~~~g~lAlsp--R~LAys----s~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~Glik 199 (882)
++.-+.+.+ +-| |+ ++.++.||.-.. +.+|.
T Consensus 252 --------GvThL~~~edGn~l-fsGaRk~dkIl~WDiR~~------------------~~pv~---------------- 288 (406)
T KOG2919|consen 252 --------GVTHLQWCEDGNKL-FSGARKDDKILCWDIRYS------------------RDPVY---------------- 288 (406)
T ss_pred --------CeeeEEeccCcCee-cccccCCCeEEEEeehhc------------------cchhh----------------
Confidence 123333333 111 22 235666763100 00110
Q ss_pred cccccccccCCCCCCCC--ccCCCccccccccccccCCCceEEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 002778 200 TLSKYCQELLPDGSSSP--VSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTAS 276 (882)
Q Consensus 200 tLs~~~~~l~pdgs~s~--~S~ss~~k~~~la~~tgs~dG~V~VWDl~s-~~~v~~f~aH~spIsaLaFSPdGtlLATAS 276 (882)
.|.++.. ..+.. |-..+.+..++ +|+.+|.|++||+.. +..+..+..|..-++.++|+|--.+|||+|
T Consensus 289 ~L~rhv~-----~TNQRI~FDld~~~~~La----sG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 289 ALERHVG-----DTNQRILFDLDPKGEILA----SGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred hhhhhcc-----CccceEEEecCCCCceee----ccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 0111110 00111 11223334433 578999999999998 666888999999999999999999999988
Q ss_pred cCCCEEEEEecC
Q 002778 277 VYGNNINIFRIM 288 (882)
Q Consensus 277 ~dGt~IrVWdi~ 288 (882)
|+ |+|...
T Consensus 360 --Gq--r~f~~~ 367 (406)
T KOG2919|consen 360 --GQ--RIFKYP 367 (406)
T ss_pred --Cc--eeecCC
Confidence 55 677764
No 246
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.41 E-value=0.0023 Score=79.83 Aligned_cols=96 Identities=14% Similarity=0.307 Sum_probs=71.8
Q ss_pred EECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC
Q 002778 242 KDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 320 (882)
Q Consensus 242 WDl~s~~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a 320 (882)
|... |..++++..|...|..+|.++.. .++||||.||+ |+||+...-. +.+ +. ......|.. ...
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~~-~~~-~s------~rS~ltys~----~~s 1099 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKLE-GEG-GS------ARSELTYSP----EGS 1099 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhhh-cCc-ce------eeeeEEEec----cCC
Confidence 5553 77899999999999999887755 89999999886 9999985321 110 10 011222322 234
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 321 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 321 ~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
++..+.+.+.+..+|+++.||.|++++|+.+
T Consensus 1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred ceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 7899999999999999999999999999875
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.0035 Score=73.14 Aligned_cols=187 Identities=14% Similarity=0.167 Sum_probs=121.8
Q ss_pred cCCeEEEEECCCCeEEEEEEcC-CcEEEEEEcC--CEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCccccccc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~-s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
+...|.-.+|..|+.+.-|+-. +.+..|.+++ .+||+|. ++.|.+||.++.....+|..... .. ..++.+.
T Consensus 153 sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~---s~pg~~~- 227 (703)
T KOG2321|consen 153 SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VN---SHPGGDA- 227 (703)
T ss_pred cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc-cC---CCccccc-
Confidence 4456777799999988888855 6788888886 7888887 67899999998777666653111 00 0011100
Q ss_pred ceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCC
Q 002778 135 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 214 (882)
Q Consensus 135 ~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~ 214 (882)
+.++..|.|.++++.
T Consensus 228 ----~~svTal~F~d~gL~------------------------------------------------------------- 242 (703)
T KOG2321|consen 228 ----APSVTALKFRDDGLH------------------------------------------------------------- 242 (703)
T ss_pred ----cCcceEEEecCCcee-------------------------------------------------------------
Confidence 001112233222111
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEecCCCc
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSC 291 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f-~aH~spIsaLaFSPd--GtlLATAS~dGt~IrVWdi~p~~ 291 (882)
++ .|...|.|.|||+.+.+.+..- ....-||..|.|.+. +..|+|.. ...++|||-.+
T Consensus 243 -------------~a--VGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D--k~~~kiWd~~~-- 303 (703)
T KOG2321|consen 243 -------------VA--VGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD--KRILKIWDECT-- 303 (703)
T ss_pred -------------EE--eeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc--hHHhhhccccc--
Confidence 11 2345789999999988765332 233568999999876 45677665 46799999754
Q ss_pred ccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 292 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 292 ~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
| .....+ -....|.++||-|++-.+.++-.++.+|.|=|...|
T Consensus 304 -----G----------k~~asi---Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 304 -----G----------KPMASI---EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred -----C----------Cceeec---cccCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 3 122221 122459999999999999999999999988876544
No 248
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.32 E-value=0.21 Score=51.48 Aligned_cols=58 Identities=10% Similarity=-0.071 Sum_probs=42.9
Q ss_pred CCeEEEEECCCCeEEEEEEcC---CcEE-EEEEcCCEEEEE-ECCeEEEEECCCCceeEEEec
Q 002778 60 PTAVRFYSFQSHCYEHVLRFR---SSVC-MVRCSPRIVAVG-LATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~---s~V~-sV~~S~rlLAV~-~d~qI~IWDa~T~e~l~tL~t 117 (882)
.++|..||+++|+.+....+. .... ......+.|.++ .++.|++||+.||+.+++...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~ 64 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL 64 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec
Confidence 367999999999999999762 2223 222245555554 678899999999999888864
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.31 E-value=0.0057 Score=67.97 Aligned_cols=219 Identities=15% Similarity=0.229 Sum_probs=129.7
Q ss_pred cCCeEEEE-ECCCCeEEEEEE--cCCcEEEEEEcC--CEEEEEECC-eEEEEECC-CCceeEEEecCCCcccCCCCcccc
Q 002778 59 SPTAVRFY-SFQSHCYEHVLR--FRSSVCMVRCSP--RIVAVGLAT-QIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 59 sp~tVrlW-DlkTG~~V~tLk--f~s~V~sV~~S~--rlLAV~~d~-qI~IWDa~-T~e~l~tL~t~p~p~~~~~~~~g~ 131 (882)
.+.+|||| ...+|++...+. .+++++++.+.. ++|.+++++ .+.=|-+. ..+...-++.+..-+ .. +
T Consensus 44 ~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~----~~--v 117 (404)
T KOG1409|consen 44 EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ----AR--V 117 (404)
T ss_pred ccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh----cc--e
Confidence 56899999 566799888887 467889888876 788888864 56666432 222222222222110 00 0
Q ss_pred cccceeeEEcCcEEEEeCC-CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCC
Q 002778 132 NVGYGPMAVGPRWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 210 (882)
Q Consensus 132 ~~~~g~lAlspR~LAyss~-~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~p 210 (882)
.--..++.+.|+...+. +-..|.+- .+|.-+.+|..+. .
T Consensus 118 --~~~if~~~~e~V~s~~~dk~~~~hc~------------------e~~~~lg~Y~~~~-------------------~- 157 (404)
T KOG1409|consen 118 --SAIVFSLTHEWVLSTGKDKQFAWHCT------------------ESGNRLGGYNFET-------------------P- 157 (404)
T ss_pred --eeEEecCCceeEEEeccccceEEEee------------------ccCCcccceEeec-------------------c-
Confidence 00123445577765543 33444321 1112222222210 0
Q ss_pred CCCCCCccCCCccccccccccccCCCceEEEEE--CCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 211 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD--FVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 211 dgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWD--l~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
.++..++-. .++ .|+..|.|.+-. ......+.++.+|..+|.+++++|...+|.++.. ++.+.+||+-
T Consensus 158 ---~t~~~~d~~---~~f---vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~-d~~vi~wdig 227 (404)
T KOG1409|consen 158 ---ASALQFDAL---YAF---VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS-DHSVIMWDIG 227 (404)
T ss_pred ---CCCCceeeE---EEE---ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc-cCceEEEecc
Confidence 000001100 001 234445444433 3345678999999999999999999999999998 4568899993
Q ss_pred CCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 289 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 289 p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
- .. -..+++. |+. ..|+.+..-+--+.|.+++.||-|-+|+++-.
T Consensus 228 g-----~~-----------g~~~el~-gh~-~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 228 G-----RK-----------GTAYELQ-GHN-DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred C-----Cc-----------ceeeeec-cch-hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 1 01 1445554 333 46888888788899999999999999999754
No 250
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.0032 Score=70.71 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=49.1
Q ss_pred cCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 233 MDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~-f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
|..-|.+..+|+..++.+.. |++-++.|++|..+|.+.+||+++.| +.+||||+.+
T Consensus 265 gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD-RyvRIhD~kt 321 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD-RYVRIHDIKT 321 (412)
T ss_pred ecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc-eeEEEeeccc
Confidence 45567888999999988766 88899999999999999999999995 5699999964
No 251
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.22 E-value=0.0066 Score=66.97 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=61.4
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc-CCcccEEEEEEecccCCcEEEEEEccC
Q 002778 252 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW-NSSHVHLYKLHRGITSATIQDICFSHY 330 (882)
Q Consensus 252 ~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~-sss~~~l~~L~RG~t~a~I~sLaFSPD 330 (882)
.|..|.....++.|+|.++++|++|. +++|-||=..-. -|| -+ +|+.+-. ...|.+++|.|+
T Consensus 95 vLlRiNrAAt~V~WsP~enkFAVgSg-ar~isVcy~E~E----------NdWWVs--KhikkPi----rStv~sldWhpn 157 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKENKFAVGSG-ARLISVCYYEQE----------NDWWVS--KHIKKPI----RSTVTSLDWHPN 157 (361)
T ss_pred eEEEeccceeeEeecCcCceEEeccC-ccEEEEEEEecc----------cceehh--hhhCCcc----ccceeeeeccCC
Confidence 44457788999999999999999997 788999887421 122 11 2232211 246999999999
Q ss_pred CCEEEEEeCCCeEEEEEC
Q 002778 331 SQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 331 g~~LAsgS~DGTVhIWdI 348 (882)
.-.||+||.|+.++||..
T Consensus 158 nVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred cceecccccCcceeEEEE
Confidence 999999999999999975
No 252
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.15 E-value=0.011 Score=74.05 Aligned_cols=108 Identities=12% Similarity=0.112 Sum_probs=73.1
Q ss_pred CCCceEEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~a--H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
-.-+.|..||+.....+..++. ..+.|++++.||-+.+|++|...|. +-+||+.- + ..+.
T Consensus 1170 T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF-------~----------~~i~ 1231 (1431)
T KOG1240|consen 1170 TDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRF-------R----------VPIL 1231 (1431)
T ss_pred EeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCce-EEEEEeec-------C----------ceee
Confidence 3457899999998776655543 3478999999999999999999786 78999963 1 1222
Q ss_pred EEEecccCCcEEEEEEc---cCCCEEEEEe--CCCeEEEEECCCCCCccccccc
Q 002778 312 KLHRGITSATIQDICFS---HYSQWIAIVS--SKGTCHVFVLSPFGGDSGFQTL 360 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFS---PDg~~LAsgS--~DGTVhIWdI~~~gg~~~l~~H 360 (882)
...-+. .++|.-|+.. +...++++++ ..+.|.+|++..+-+...+..-
T Consensus 1232 sw~~P~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1232 SWEHPA-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred cccCcc-cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 222222 2456555544 4444655554 4678999999987666655443
No 253
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.13 E-value=0.06 Score=69.15 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=52.1
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-ecc-----------cCCcEEEEEEc
Q 002778 261 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGI-----------TSATIQDICFS 328 (882)
Q Consensus 261 saLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~-RG~-----------t~a~I~sLaFS 328 (882)
..|+|+++|+++++-+. ++.|++||.... .+..+. .|. .-.....|+++
T Consensus 807 ~Gvavd~dG~LYVADs~-N~rIrviD~~tg------------------~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd 867 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSY-NHKIKKLDPATK------------------RVTTLAGTGKAGFKDGKALKAQLSEPAGLALG 867 (1057)
T ss_pred ceeeEeCCCcEEEEECC-CCEEEEEECCCC------------------eEEEEeccCCcCCCCCcccccccCCceEEEEe
Confidence 47899999997776665 567999998531 111111 010 00146789999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCC
Q 002778 329 HYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 329 PDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
+||+.+++-+.+++|++||+.+..
T Consensus 868 ~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 868 ENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCCEEEEECCCCEEEEEECCCCc
Confidence 999999999999999999997643
No 254
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.13 E-value=0.069 Score=61.84 Aligned_cols=83 Identities=19% Similarity=0.138 Sum_probs=47.8
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH- 314 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~- 314 (882)
+..|.++|+.+++ ...+..+........|+|||+.|+-.+..+..-.||.+... .| ...++.
T Consensus 256 ~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-----~g-----------~~~rlt~ 318 (419)
T PRK04043 256 QPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-----SG-----------SVEQVVF 318 (419)
T ss_pred CcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC-----CC-----------CeEeCcc
Confidence 3567888887765 34444443323345799999988776654333445544211 02 111111
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCC
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSK 340 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~D 340 (882)
.|. ...+|||||++||..+..
T Consensus 319 ~g~-----~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 319 HGK-----NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CCC-----cCceECCCCCEEEEEEcC
Confidence 122 124899999999988765
No 255
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.12 E-value=0.0027 Score=70.15 Aligned_cols=87 Identities=17% Similarity=0.294 Sum_probs=68.7
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
..+++|++|++...+-...+..-..++.++++||||+.|.+.|.=+-.|.||.+.+. ..+-+
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~------------------~~~~~ 129 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ------------------KGYLL 129 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc------------------eeEEe
Confidence 568999999999888888888889999999999999877766655666999999641 22333
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCC
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVSSK 340 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS~D 340 (882)
.. ..+.+..++|.|||++.|..+.+
T Consensus 130 ~~--pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 130 PH--PKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred cc--cccCceeEEECCCCceeeeeecc
Confidence 22 22346889999999999999876
No 256
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.12 E-value=0.0012 Score=74.18 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=73.2
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
...+.+|....+. ...+.+|-+-+..|+|+||++++.||+.|++ |||=.. | ++ .-+..+.-
T Consensus 131 ~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~y-p-------a~---------f~Iesfcl 191 (390)
T KOG3914|consen 131 VYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRY-P-------AT---------FVIESFCL 191 (390)
T ss_pred ceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEec-C-------cc---------cchhhhcc
Confidence 4455666655543 4456689999999999999999999999775 898776 3 11 12334445
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 316 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
||+ .-|..|+.-+ ++.|+++|-|+|+++||+..+....
T Consensus 192 GH~-eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 192 GHK-EFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred ccH-hheeeeeecc-CceeeecCCCCcEEEEecccCCccc
Confidence 765 3577787754 5679999999999999999877663
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.12 E-value=0.0016 Score=83.60 Aligned_cols=90 Identities=22% Similarity=0.349 Sum_probs=65.9
Q ss_pred CCceEEEEECCC--CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 235 NAGIVVVKDFVT--RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 235 ~dG~V~VWDl~s--~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
.++.+.+||..- +..+.. .+|.+.++++++-|.-++|.||+.+|. |.|||+.- ++
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rq------------------rq--- 2369 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQ------------------RQ--- 2369 (2439)
T ss_pred CCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHH------------------HH---
Confidence 356788999642 222333 899999999999999999999999997 89999952 11
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
| |.+ ++. +. .-.++++++.+|+++||+++..+-..
T Consensus 2370 l-~h~----~~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2370 L-RHT----FQA--LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred H-HHH----hhh--hh-hhheeeccCcccceEEEEccccchhh
Confidence 1 111 111 22 44689999999999999998875443
No 258
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.10 E-value=0.014 Score=71.35 Aligned_cols=184 Identities=14% Similarity=0.131 Sum_probs=125.4
Q ss_pred CeEEEEECCCCeEEEEEEcCC-cEEEEEEcCCEEEEEE-CCeEEEEECCCCceeEEEecCCCcccCCCCcccccccceee
Q 002778 61 TAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 138 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLkf~s-~V~sV~~S~rlLAV~~-d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~~~g~l 138 (882)
..+..+|++++++.+.....+ .|.-++-+.+.+.+|. .++|.+=|.++.+.++++.+|... ...+
T Consensus 157 ~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-------------iSDf 223 (1118)
T KOG1275|consen 157 EKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-------------ISDF 223 (1118)
T ss_pred hheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc-------------eeee
Confidence 557778999999998887543 6888889988888875 578999999999999999988661 1233
Q ss_pred EEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCCCCCcc
Q 002778 139 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 218 (882)
Q Consensus 139 AlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs~s~~S 218 (882)
.+..+.|+..+...
T Consensus 224 Dv~GNlLitCG~S~------------------------------------------------------------------ 237 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSM------------------------------------------------------------------ 237 (1118)
T ss_pred eccCCeEEEeeccc------------------------------------------------------------------
Confidence 43334444332100
Q ss_pred CCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCC
Q 002778 219 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSG 297 (882)
Q Consensus 219 ~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG 297 (882)
+...+ ..|--|+|||++..+.+.-+.-|.+| .-+.|.|.= +.||.+|..|. ..+-|...-
T Consensus 238 -----R~~~l-----~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~l------- 298 (1118)
T KOG1275|consen 238 -----RRYNL-----AMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTATL------- 298 (1118)
T ss_pred -----ccccc-----cccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeecccccc-------
Confidence 00000 13566899999999888877777777 568899975 46677777676 677774320
Q ss_pred CCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 298 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 298 ~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
+.-...++.+ ......|..+.||+.++.+|.+..+|.||+|.=.+
T Consensus 299 ------sNP~~~~~~v--~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 299 ------SNPPAGVKMV--NPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred ------CCCccceeEE--ccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 0000111211 11123489999999999999999999999998433
No 259
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.10 E-value=0.0075 Score=66.53 Aligned_cols=89 Identities=18% Similarity=0.258 Sum_probs=62.3
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCc--ccCCCCCCccccCCc---ccEEEEEEecccCCcEEEEEEc
Q 002778 254 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC--MRSGSGNHKYDWNSS---HVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 254 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~--~~~~sG~~~~d~sss---~~~l~~L~RG~t~a~I~sLaFS 328 (882)
+.+.+.|.+|.|.|++-+||++|.|+. .|||..---. .+. ....|.+. ...+.++. .....|..+.||
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k-~rVfSayIK~Vdekp----ap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs 215 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGK-CRVFSAYIKGVDEKP----APTPWGSKMPFGQLMSEAS--SSGGWVHGVLFS 215 (361)
T ss_pred CccccceeeeeccCCcceecccccCcc-eeEEEEeeeccccCC----CCCCCccCCcHHHHHHhhc--cCCCceeeeEeC
Confidence 357889999999999999999999886 8999742100 000 01123222 13344442 233579999999
Q ss_pred cCCCEEEEEeCCCeEEEEECC
Q 002778 329 HYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 329 PDg~~LAsgS~DGTVhIWdI~ 349 (882)
|+|..||-.+.|.++.+=|-.
T Consensus 216 ~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CCCCEeeEecCCCceEEeecC
Confidence 999999999999999986643
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.021 Score=66.96 Aligned_cols=131 Identities=17% Similarity=0.173 Sum_probs=89.9
Q ss_pred CCeEEEEECCCCeEEEEEE---cCCcEEEEEEcCC---EEEEEECCeEEEEECCCCceeEEEecCCCcccCCCCcccccc
Q 002778 60 PTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSPR---IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 133 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk---f~s~V~sV~~S~r---lLAV~~d~qI~IWDa~T~e~l~tL~t~p~p~~~~~~~~g~~~ 133 (882)
.+.|.+|++..|+.-..+. |.+.|..+..+.+ +-.++.+.++..|+..+...+......+..
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~------------ 146 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL------------ 146 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc------------
Confidence 3678999999999888886 7888888876643 344566778999998776654444332110
Q ss_pred cceeeEEcCcEEEEeCCCeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccccccCCCCC
Q 002778 134 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 213 (882)
Q Consensus 134 ~~g~lAlspR~LAyss~~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~~~l~pdgs 213 (882)
+.. |.+++ +
T Consensus 147 -~~s-------l~is~---------------------------D------------------------------------ 155 (541)
T KOG4547|consen 147 -VSS-------LCISP---------------------------D------------------------------------ 155 (541)
T ss_pred -cce-------EEEcC---------------------------C------------------------------------
Confidence 001 12211 1
Q ss_pred CCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC-----CCEEEEEEcCCCEEEEEecC
Q 002778 214 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-----GTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 214 ~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPd-----GtlLATAS~dGt~IrVWdi~ 288 (882)
++.+. ...+.|++||+.+++.+.+|.+|.++|++++|--+ |.++.+...-++.|.+|-+.
T Consensus 156 ---------~~~l~------~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 156 ---------GKILL------TASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ---------CCEEE------eccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 11111 12368999999999999999999999999999877 66665544445668899885
No 261
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.00 E-value=0.16 Score=64.53 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=65.7
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d--Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
-..++||+-. |....+-..-.+--.+|+|-|+|+++|++-.. .+.|.+|.- ||.. +--+.+
T Consensus 236 ~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr------NGLr----------hgeF~l 298 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER------NGLR----------HGEFTL 298 (928)
T ss_pred eeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec------CCcE----------eeeEec
Confidence 3689999976 55444333222223478999999999998652 344556653 3221 223455
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+.......|..|+|++||..||+.-.|. |.||-...+
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 4323345799999999999999987654 999998776
No 262
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=96.99 E-value=0.01 Score=68.90 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=69.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+++.||.|++|.-. |-...++.....+|.|++|.|+..-++-+-. |+ |.|=.+.+. ..+
T Consensus 121 t~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h-~~IKpL~~n-----------------~k~- 179 (737)
T KOG1524|consen 121 TAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GH-ISIKPLAAN-----------------SKI- 179 (737)
T ss_pred eecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecC-Ce-EEEeecccc-----------------cce-
Confidence 56899999999864 4334455556789999999998876555443 44 656555431 122
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
++.-.+...|.++.|++.+..|++|+.|-..+|||-.
T Consensus 180 -i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 180 -IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred -eEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 2222344689999999999999999999999999963
No 263
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=96.96 E-value=0.062 Score=60.67 Aligned_cols=234 Identities=15% Similarity=0.065 Sum_probs=125.8
Q ss_pred CCeEEEEECCCCeEEEEEEcC---CcEEEEEEcC--CEEEEEE-CCeEEEEECCCCce---eEEEecCCCcccCCCCccc
Q 002778 60 PTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLEN---KFSVLTYPVPQLAGQGAVG 130 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~---s~V~sV~~S~--rlLAV~~-d~qI~IWDa~T~e~---l~tL~t~p~p~~~~~~~~g 130 (882)
.++|.+-|+.|.+.+-.+.+. +.||.+..+| .+++++. ++.|-+||.+.... +..+..++.
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~---------- 195 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK---------- 195 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCc----------
Confidence 478889999999988888754 4899999887 6676655 67899999986552 222212222
Q ss_pred ccccceeeEEcC---cEEEEeCC--CeEeccCCCCCCccCCCCCCCCCcCCCCCccEEEeeccchhhhhccccccccccc
Q 002778 131 INVGYGPMAVGP---RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 205 (882)
Q Consensus 131 ~~~~~g~lAlsp---R~LAyss~--~v~lwdtG~vs~q~lt~~~vs~s~SP~~GslVA~~A~essk~la~GliktLs~~~ 205 (882)
+ +-..-|.| ++|+.++. ++-+|+.-.. |. .+.+|.+- +.|...-
T Consensus 196 -~--F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~--~~----------------~~~~~~~~----------~~L~~~~ 244 (609)
T KOG4227|consen 196 -N--FYTAEFHPETPALILVNSETGGPNVFDRRMQ--AR----------------PVYQRSMF----------KGLPQEN 244 (609)
T ss_pred -c--ceeeeecCCCceeEEeccccCCCCceeeccc--cc----------------hHHhhhcc----------ccCcccc
Confidence 1 12233444 88887754 4667764211 10 00000000 0000000
Q ss_pred cccCCCCCCCCccCCCccccccccccccCCCceEEEEECCCCcEE-EEeccC-------CCCeEEEEECCCCCEEEEEEc
Q 002778 206 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII-SQFKAH-------TSPISALCFDPSGTLLVTASV 277 (882)
Q Consensus 206 ~~l~pdgs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v-~~f~aH-------~spIsaLaFSPdGtlLATAS~ 277 (882)
.+. -.+.+++++ .+.+++ ..----.+||+.+.++. -++. | ...|.+++|--|-+ +||+|.
T Consensus 245 ~~~----M~~~~~~~G-~Q~msi-----RR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD 312 (609)
T KOG4227|consen 245 TEW----MGSLWSPSG-NQFMSI-----RRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSD 312 (609)
T ss_pred hhh----hheeeCCCC-Ceehhh-----hccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCc
Confidence 000 001112211 111111 00111246888875543 3332 3 23577889987755 889887
Q ss_pred CCCEEEEEecCCCcccCCCCCCcccc---CCc--ccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 278 YGNNINIFRIMPSCMRSGSGNHKYDW---NSS--HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 278 dGt~IrVWdi~p~~~~~~sG~~~~d~---sss--~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
+ -.|.+|.+-...-..|-...+-|- .+. ...-....||+. ..+..|.|+|....|++++-...++||.-
T Consensus 313 ~-~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHR-Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 313 H-WGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHR-SVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred c-cceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccc-ccccceeecCCcceEeccchhhheecccc
Confidence 4 559999994321111100000000 000 112234457865 57889999999999999999999999964
No 264
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.94 E-value=0.0022 Score=44.37 Aligned_cols=39 Identities=31% Similarity=0.681 Sum_probs=33.6
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 002778 247 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 286 (882)
Q Consensus 247 ~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWd 286 (882)
++.+..+.+|...|.+++|++++.++++++.+|. +++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 3456778889999999999999999999999775 89996
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.84 E-value=0.014 Score=66.18 Aligned_cols=99 Identities=9% Similarity=0.005 Sum_probs=75.0
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~---------dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
.|.|.|.|..+++.+.++..-..|-- + +||||+.|..|.. +...|.|||+.+ +
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-------~--------- 87 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-------H--------- 87 (352)
T ss_pred CceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-------C---------
Confidence 38999999999999999986655543 4 9999999988877 666799999975 2
Q ss_pred ccEEEEEEeccc-----CCcEEEEEEccCCCEEEEEe-C-CCeEEEEECCCCCC
Q 002778 307 HVHLYKLHRGIT-----SATIQDICFSHYSQWIAIVS-S-KGTCHVFVLSPFGG 353 (882)
Q Consensus 307 ~~~l~~L~RG~t-----~a~I~sLaFSPDg~~LAsgS-~-DGTVhIWdI~~~gg 353 (882)
..+.++.-|-. ...-..+++||||++|.+.. + +..|.|.|+....-
T Consensus 88 -~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 88 -LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF 140 (352)
T ss_pred -cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE
Confidence 34455542211 11235799999999999887 4 78999999987643
No 266
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.70 E-value=0.45 Score=53.13 Aligned_cols=98 Identities=22% Similarity=0.300 Sum_probs=62.7
Q ss_pred ceEEEEECCCCcEEEE--ec--cCCCCeEEEEECCCCCEEEEEEcCCC------EEEEEecCCCcccCCCCCCccccCCc
Q 002778 237 GIVVVKDFVTRAIISQ--FK--AHTSPISALCFDPSGTLLVTASVYGN------NINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~--f~--aH~spIsaLaFSPdGtlLATAS~dGt------~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
-.+...|..+|+++.+ +. -|.-.|.-|+++++|+.++-.-..|- .+-+|+- |. .
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~---------g~-------~ 201 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR---------GG-------A 201 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC---------CC-------c
Confidence 3466778889988877 52 38889999999999988776544442 1112221 10 0
Q ss_pred ccEEEEE----EecccCCcEEEEEEccCCCEEEEEeCC-CeEEEEECCCCC
Q 002778 307 HVHLYKL----HRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFG 352 (882)
Q Consensus 307 ~~~l~~L----~RG~t~a~I~sLaFSPDg~~LAsgS~D-GTVhIWdI~~~g 352 (882)
..+..+ .+.+. .-|-||+|+.|+.++|++|-+ |.+.+||..+..
T Consensus 202 -~~~~~~p~~~~~~l~-~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 202 -LRLLPAPEEQWRRLN-GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred -ceeccCChHHHHhhC-CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 011110 01111 258899999999999888755 679999987653
No 267
>KOG4415 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.0011 Score=67.83 Aligned_cols=41 Identities=22% Similarity=0.514 Sum_probs=36.9
Q ss_pred ccCCCCccccceeeeeeeeEEeccCCc-cccccceeEEEEcCC
Q 002778 567 KNCSVKSYERSHWYLSNAEVQMSSGRL-PIWQSSKISFFKMDS 608 (882)
Q Consensus 567 ~~~~~~~~e~~~~yls~aEvq~~~~~~-piW~~~~i~F~~m~~ 608 (882)
+..++..+|+..| |+.+|+.||.+++ .|||+|||+|+.+..
T Consensus 17 laadh~GdEDeeW-l~hVEi~Th~gPHRriWmGPQFef~eih~ 58 (247)
T KOG4415|consen 17 LAADHIGDEDEEW-LPHVEIRTHLGPHRRIWMGPQFEFFEIHE 58 (247)
T ss_pred ccccccCcccccc-ccceEEEeccCccceeeecCceeEEEecC
Confidence 3457778999999 9999999999996 999999999999876
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.64 E-value=0.11 Score=60.10 Aligned_cols=131 Identities=21% Similarity=0.295 Sum_probs=76.2
Q ss_pred cccccccccCccCCCC-Cccc-ccC-CeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEEC-CeEEEEECCCCce
Q 002778 38 RSHLGGVRDGMMDSQS-GNCV-NSP-TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA-TQIYCFDALTLEN 111 (882)
Q Consensus 38 ~~~~~~v~~~~~~~~~-~~~~-~sp-~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~d-~qI~IWDa~T~e~ 111 (882)
.++-++||-.+....+ +-.+ ..+ ..|-|||..+|+.-+-.+--+.|.+|..++ +.++++.+ .+|.+.|+.++..
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 3666667443332222 1111 123 489999999988555545557899999876 56777765 3688889999874
Q ss_pred eEEEecCCCcccCCCCcccccccceeeEEcC--cEEEEeC------CCeEeccC-CCCC--CccCCCCCCCCCcCCCCCc
Q 002778 112 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS------NTLLLSNS-GRLS--PQNLTPSGVSPSTSPGGSS 180 (882)
Q Consensus 112 l~tL~t~p~p~~~~~~~~g~~~~~g~lAlsp--R~LAyss------~~v~lwdt-G~vs--~q~lt~~~vs~s~SP~~Gs 180 (882)
. .+..... + ....++++| ||+||+- ..+++.+. |+-. ..+-+....+|++-|++..
T Consensus 436 ~-~idkS~~------~------lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ry 502 (668)
T COG4946 436 R-LIDKSEY------G------LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRY 502 (668)
T ss_pred e-Eeccccc------c------eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcE
Confidence 2 2221110 1 134567777 9999973 24566664 2111 1222224678888776654
Q ss_pred c
Q 002778 181 L 181 (882)
Q Consensus 181 l 181 (882)
|
T Consensus 503 L 503 (668)
T COG4946 503 L 503 (668)
T ss_pred E
Confidence 3
No 269
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.11 Score=61.02 Aligned_cols=101 Identities=13% Similarity=0.237 Sum_probs=73.9
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE-EcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA-SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATA-S~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
.++.+.++....++..+. -.+||.++.|+|+|+-+|.. +--=-.+-|||+. | ..++.|-.
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--------~----------~~v~df~e 311 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--------G----------KPVFDFPE 311 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--------C----------CEeEeCCC
Confidence 467777777444544444 46899999999999877654 3222357899985 3 47777765
Q ss_pred cccCCcEEEEEEccCCCEEEEEeC---CCeEEEEECCCCCCccccccc
Q 002778 316 GITSATIQDICFSHYSQWIAIVSS---KGTCHVFVLSPFGGDSGFQTL 360 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsgS~---DGTVhIWdI~~~gg~~~l~~H 360 (882)
|-. .++-|||.|++|+.++. .|.+-|||+...+....+..-
T Consensus 312 gpR----N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~ 355 (566)
T KOG2315|consen 312 GPR----NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA 355 (566)
T ss_pred CCc----cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC
Confidence 533 56889999999999876 589999999988777665543
No 270
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.51 E-value=0.012 Score=65.64 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=54.4
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE---ec-----ccCCcE---EEE
Q 002778 257 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RG-----ITSATI---QDI 325 (882)
Q Consensus 257 ~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~---RG-----~t~a~I---~sL 325 (882)
.+.|+.+.|+++|++++|-+. - +++|||+... . + ....+.++ |. ..+..| ..+
T Consensus 272 IsSISDvKFs~sGryilsRDy-l-tvk~wD~nme-~----~---------pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSRDY-L-TVKLWDLNME-A----K---------PVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred hhhhhceEEccCCcEEEEecc-c-eeEEEecccc-C----C---------cceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 457889999999999999876 3 5999999432 0 0 01122211 00 001112 458
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 326 CFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 326 aFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+||-++.++++||-..-+|+|++..+
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EEcCCcceEecccccceEEEecCCCC
Confidence 99999999999999999999997653
No 271
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.43 E-value=0.23 Score=55.71 Aligned_cols=108 Identities=16% Similarity=0.261 Sum_probs=65.1
Q ss_pred CceEEEEECCCC----cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 236 AGIVVVKDFVTR----AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 236 dG~V~VWDl~s~----~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
.|.|..|++... +.+.........-..|+++|+|++|++|...+..|.+|++... |.. .....+.
T Consensus 61 ~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~------g~l-----~~~~~~~ 129 (345)
T PF10282_consen 61 SGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD------GSL-----GEVVQTV 129 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT------SEE-----EEEEEEE
T ss_pred CCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC------ccc-----ceeeeec
Confidence 455666665442 2334444333445679999999999999877778999999642 200 0000111
Q ss_pred EEE-ecc-----cCCcEEEEEEccCCCEEEEEeC-CCeEEEEECCCCCCc
Q 002778 312 KLH-RGI-----TSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGD 354 (882)
Q Consensus 312 ~L~-RG~-----t~a~I~sLaFSPDg~~LAsgS~-DGTVhIWdI~~~gg~ 354 (882)
... .|. ......++.|+||+++|.+... ...|++|+++..++.
T Consensus 130 ~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~ 179 (345)
T PF10282_consen 130 RHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK 179 (345)
T ss_dssp ESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T
T ss_pred ccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce
Confidence 110 011 1235789999999999988753 347999999876543
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.40 E-value=0.035 Score=64.03 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=71.8
Q ss_pred cCCCc-eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 233 MDNAG-IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 233 gs~dG-~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
|..|| .+-|+|..+++ +..+...-+.|.+|..+|||++++.|-.... |-+.|+.+ |. ..+.
T Consensus 377 gt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vididn-------gn---------v~~i 438 (668)
T COG4946 377 GTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDIDN-------GN---------VRLI 438 (668)
T ss_pred eccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEecC-------CC---------eeEe
Confidence 45677 78999998876 4566667789999999999999988876543 66777754 31 1222
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCC----eEEEEECCC
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLSP 350 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DG----TVhIWdI~~ 350 (882)
.-. .-+.|.+++|+|+++|||-+=-+| .|||||+..
T Consensus 439 dkS---~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 439 DKS---EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ccc---ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 211 124799999999999999876554 699999975
No 273
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=96.39 E-value=0.026 Score=63.64 Aligned_cols=103 Identities=13% Similarity=0.073 Sum_probs=80.1
Q ss_pred ccCCCceEEEEECCC------CcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccC
Q 002778 232 DMDNAGIVVVKDFVT------RAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 304 (882)
Q Consensus 232 tgs~dG~V~VWDl~s------~~~v~~f~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~s 304 (882)
+|+.|-.++||.+.. .+.+.... .|.+.|.+|+|+-..++|.++..+|+ +.+.|+.+.
T Consensus 73 SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~-VI~HDiEt~-------------- 137 (609)
T KOG4227|consen 73 SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT-VIKHDIETK-------------- 137 (609)
T ss_pred ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce-eEeeecccc--------------
Confidence 567889999999853 23443332 46789999999999999999999887 458899642
Q ss_pred CcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 002778 305 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 352 (882)
Q Consensus 305 ss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~g 352 (882)
..++.+........|+.+.-+|-...|++++.++-|-+||+....
T Consensus 138 ---qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 138 ---QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ---eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 355665433333469999999999999999999999999997654
No 274
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.33 E-value=0.015 Score=68.44 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=66.9
Q ss_pred EEEECCCCcE--EEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEec
Q 002778 240 VVKDFVTRAI--ISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 316 (882)
Q Consensus 240 ~VWDl~s~~~--v~~f-~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG 316 (882)
.+|+....+. ++.. -.+.+.|.+.+++|+.++|+.|..||. |.+||... + +..+-+.
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~-------~------------~t~~~ka 298 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTR-------G------------VTLLAKA 298 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCC-------C------------eeeeeee
Confidence 4677654432 2211 257889999999999999999999886 88999854 1 1111111
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 317 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 317 ~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.-....++|+|||..+++|+..|.+.+||+.-.
T Consensus 299 --~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 299 --EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred --cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 124688999999999999999999999999754
No 275
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.2 Score=58.94 Aligned_cols=96 Identities=10% Similarity=0.202 Sum_probs=63.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d--Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
.+.|+.+....+......-..+|-+.+|.|.|..+|+-+.. ..++.+|.+... + ....++.+|..
T Consensus 426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~------~-------~~~~lVk~~dk 492 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN------I-------KKPSLVKELDK 492 (698)
T ss_pred eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecC------C-------Cchhhhhhhcc
Confidence 35666666554333333346789999999999999887643 345778887531 0 11134444432
Q ss_pred cccCCcEEEEEEccCCCEEEEE---eCCCeEEEEECCC
Q 002778 316 GITSATIQDICFSHYSQWIAIV---SSKGTCHVFVLSP 350 (882)
Q Consensus 316 G~t~a~I~sLaFSPDg~~LAsg---S~DGTVhIWdI~~ 350 (882)
..-+.|-|||.|+|++++ |..|++..+|.+-
T Consensus 493 ----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 493 ----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred ----cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 124779999999999876 4578999999874
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.20 E-value=0.72 Score=59.57 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=51.9
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe--cc----cCCcEEEEEEccCCCE
Q 002778 260 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR--GI----TSATIQDICFSHYSQW 333 (882)
Q Consensus 260 IsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R--G~----t~a~I~sLaFSPDg~~ 333 (882)
...|+|+|+|+.|..+....+.|++||+......-..| .+.. ....++.+-. |. .-..-..|+|++||+.
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g---g~~~-~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L 817 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG---GDPT-FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI 817 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe---cccc-cCcccccccCCCCchhhhhccCCceeeEeCCCcE
Confidence 45799999999777777667789999985310000000 0000 0000111100 00 0012368999999999
Q ss_pred EEEEeCCCeEEEEECCC
Q 002778 334 IAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 334 LAsgS~DGTVhIWdI~~ 350 (882)
+++-+.+++|++||...
T Consensus 818 YVADs~N~rIrviD~~t 834 (1057)
T PLN02919 818 YVADSYNHKIKKLDPAT 834 (1057)
T ss_pred EEEECCCCEEEEEECCC
Confidence 99999999999999864
No 277
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=96.20 E-value=0.015 Score=69.55 Aligned_cols=57 Identities=18% Similarity=0.380 Sum_probs=45.9
Q ss_pred ccCCCceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 232 DMDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~--~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
+++.+|.+.|||+... ..+...+.+......+.|+++|++||.|+..|+ |.+|++.+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~-~~~~~l~~ 517 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT-THILKLSE 517 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCc-EEEEEcCc
Confidence 3577999999999643 455666666777788899999999999999886 89999954
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.18 E-value=0.92 Score=50.91 Aligned_cols=59 Identities=15% Similarity=0.020 Sum_probs=43.1
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEE-EEcCCEEEE-EECCeEEEEECCCCceeEEEec
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMV-RCSPRIVAV-GLATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV-~~S~rlLAV-~~d~qI~IWDa~T~e~l~tL~t 117 (882)
.++.|.-+|.++|+.+........+.+. ....+.|.+ ..++.|+.||+.+++.+++...
T Consensus 113 ~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 113 EKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred CCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 4578999999999999888766655431 223344444 4577899999999998888754
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.014 Score=67.89 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=59.9
Q ss_pred CceEEEEECCCCcEEEEecc-----CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 236 AGIVVVKDFVTRAIISQFKA-----HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~a-----H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
..+|+++|..+..-...++- ...-+.+++.-|.|++||.|=..|. |-+-|... | .+
T Consensus 850 eSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc-i~~LDaR~-------G-----------~v 910 (1034)
T KOG4190|consen 850 ESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC-IAILDARN-------G-----------KV 910 (1034)
T ss_pred hhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc-EEEEecCC-------C-----------ce
Confidence 45788888887765555542 3345889999999999999876675 77888864 3 11
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEE-EEC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV-FVL 348 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhI-WdI 348 (882)
..-.|-+. +....++ .|..+.||.+-.|.++-| |--
T Consensus 911 INswrpme-cdllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 911 INSWRPME-CDLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred eccCCccc-chhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 11112222 2222233 366788888888888888 743
No 280
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.87 E-value=0.48 Score=52.33 Aligned_cols=95 Identities=13% Similarity=0.174 Sum_probs=60.4
Q ss_pred CceEEEEECCCCc-EEE--EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 236 AGIVVVKDFVTRA-IIS--QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 236 dG~V~VWDl~s~~-~v~--~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
.+.|.+|++...+ .+. .+..+ ..|.+|.. -+.+++.++.... +.++..... + ..+..
T Consensus 106 g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~--~~~~I~vgD~~~s-v~~~~~~~~------~----------~~l~~ 165 (321)
T PF03178_consen 106 GNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSV--FKNYILVGDAMKS-VSLLRYDEE------N----------NKLIL 165 (321)
T ss_dssp TTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEE--ETTEEEEEESSSS-EEEEEEETT------T----------E-EEE
T ss_pred cCEEEEEEccCcccchhhheecce-EEEEEEec--cccEEEEEEcccC-EEEEEEEcc------C----------CEEEE
Confidence 3567788877666 332 22222 24444443 3668888887555 667755321 1 34666
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
+.|......+.++.|-+|++.++++..+|.+++|..++
T Consensus 166 va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 166 VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 66655556799999987778999999999999999865
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.77 E-value=0.77 Score=51.53 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=51.4
Q ss_pred CCceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 235 NAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~~f~aH-~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
.+|.|..+|..+++.+...... .....+... .|.+|.+++.+|. |.+||..+ | ..++++
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~t-------G----------~~~~~~ 346 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSRED-------G----------SFVARL 346 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCC-------C----------CEEEEE
Confidence 4677888888888766544211 111122122 3667888888775 88999754 4 355555
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCeEEEE
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 346 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIW 346 (882)
.-+.. ....+.++. ++ .|..++.||+++.|
T Consensus 347 ~~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 347 KTDGS-GIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EcCCC-ccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 42211 112222333 33 57788999999876
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.73 E-value=1.3 Score=48.86 Aligned_cols=117 Identities=14% Similarity=0.206 Sum_probs=66.6
Q ss_pred CCceEEEEECCC-----CcEEEEe--cc-CCCCeEEEEECCCCCEEEEEEcCC-C---------EEEEEecCCCcc--c-
Q 002778 235 NAGIVVVKDFVT-----RAIISQF--KA-HTSPISALCFDPSGTLLVTASVYG-N---------NINIFRIMPSCM--R- 293 (882)
Q Consensus 235 ~dG~V~VWDl~s-----~~~v~~f--~a-H~spIsaLaFSPdGtlLATAS~dG-t---------~IrVWdi~p~~~--~- 293 (882)
..|.++-|-+.. .+.-..| .. +...|.++.++|.-++|..|+... . -+--|++..... .
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence 456666555422 2223333 33 467899999999988887765421 1 256788754210 0
Q ss_pred CCCCCCccccCCcccEEEE-----E--EecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 294 SGSGNHKYDWNSSHVHLYK-----L--HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~-----L--~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
-........-......+.+ + +++.....|..|+.||||+.||+.+.+|.+-||+|...
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 0000000000000001111 1 12333457999999999999999999999999999654
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=95.68 E-value=0.064 Score=58.96 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=72.0
Q ss_pred CCCceEEEEECCCCcE--EEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 234 DNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~--v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
..+|.+.+.+.....+ ++.+++|.-+++-..|+... +++.||+.||. +.-||+.-. + ..+
T Consensus 140 ~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p------~----------~~i 202 (339)
T KOG0280|consen 140 DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP------K----------TFI 202 (339)
T ss_pred cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC------c----------cee
Confidence 3456666555544433 45889999999999998754 57888998775 899999721 1 122
Q ss_pred EEEEecccCCcEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 311 YKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSP-Dg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+.-.+-++ +-|.+|.=|| +..+|++|+-|.++|+||....+.+
T Consensus 203 ~~n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 203 WHNSKVHT-SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eecceeee-cceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 22112222 4578887774 6789999999999999999876554
No 284
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.032 Score=63.24 Aligned_cols=96 Identities=25% Similarity=0.254 Sum_probs=74.7
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecc
Q 002778 239 VVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 317 (882)
Q Consensus 239 V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~ 317 (882)
|++.+-.+.+....+..|...|..|+|||... +|..|+. |..|+|+|+.+.+ .+..|...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl-~nkiki~dlet~~---------------~vssy~a~--- 235 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASL-GNKIKIMDLETSC---------------VVSSYIAY--- 235 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeecc-CceEEEEecccce---------------eeeheecc---
Confidence 78888877777777888999999999999888 7778888 7789999997521 12334432
Q ss_pred cCCcEEEEEEccCCC-EEEEEeCCCeEEEEECCCCCCcc
Q 002778 318 TSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 318 t~a~I~sLaFSPDg~-~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
+.||+++|.-|.. +|-+|-.+|.|.|||+....++.
T Consensus 236 --~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 236 --NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred --CCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 4699999998875 56677789999999998765543
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.33 E-value=0.17 Score=55.27 Aligned_cols=103 Identities=12% Similarity=0.039 Sum_probs=67.5
Q ss_pred CCCceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 234 DNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 234 s~dG~V~VWDl~s~--~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+.|.++++.++.-+ +....+.. -.+..++.|+|++++++.+. -..|..|.+... + . .++.
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgd-s~~Vf~y~id~~------s--------e-y~~~ 196 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGD-SRRVFRYAIDDE------S--------E-YIEN 196 (344)
T ss_pred cCCcceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecC-CCcceEEEeCCc------c--------c-eeee
Confidence 45666666666533 32222222 22789999999999999876 344677777431 1 1 2222
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
.+...+...=.+.+||..+..+|+++-||++-|||+...+.+.
T Consensus 197 -~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 197 -IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred -eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 2222222334678999999999999999999999998766554
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=95.16 E-value=0.075 Score=69.17 Aligned_cols=118 Identities=13% Similarity=0.177 Sum_probs=85.4
Q ss_pred ccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCccc-----C-----------
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR-----S----------- 294 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~-aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~-----~----------- 294 (882)
+|++||.|++|.-..++.+..++ +-.+.|+.+.|+.+|.....+..||. +-+|.+.|-+.- +
T Consensus 2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi~s 2303 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFIGS 2303 (2439)
T ss_pred ecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccCCcceeccccCCccccceeeeeh
Confidence 67899999999999998888776 34488999999999999999988775 899999763210 0
Q ss_pred ---CCC-----CCccccCCcc----cEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 295 ---GSG-----NHKYDWNSSH----VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 295 ---~sG-----~~~~d~sss~----~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
..| .....|.+.. ..+.+ - +...++++++-|.-+.|.+|+.+|.|.|||+....-.
T Consensus 2304 ~~~tag~s~d~~n~~lwDtl~~~~~s~v~~---~-H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2304 LLATAGRSSDNRNVCLWDTLLPPMNSLVHT---C-HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred hhhccccCCCCCcccchhcccCcccceeee---e-cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence 000 0112232211 12221 1 2235789999999999999999999999999865443
No 287
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.10 E-value=0.037 Score=38.00 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=26.2
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 320 ATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 320 a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
..|.+++|.++++++++++.|+++++|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4799999999999999999999999996
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.92 E-value=0.18 Score=60.86 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=59.1
Q ss_pred cCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEE-EEcCCCEEEEEecCCCcccCCCCCCccccC--Cccc
Q 002778 233 MDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVT-ASVYGNNINIFRIMPSCMRSGSGNHKYDWN--SSHV 308 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~-~v~~f~aH~spIsaLaFSPdGtlLAT-AS~dGt~IrVWdi~p~~~~~~sG~~~~d~s--ss~~ 308 (882)
.+.||+|+.||...-. .-........||.--+|-|=|.-..+ -...|..+.+.+-.... ..|. .-.+
T Consensus 220 ~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d---------~e~n~~~~~~ 290 (1081)
T KOG0309|consen 220 SSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD---------LEWNVFDLNT 290 (1081)
T ss_pred cCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchh---------hhhccccCCc
Confidence 3679999999986432 12233344678888888886653322 23323334444432210 0010 0113
Q ss_pred EEEEEEecccCCcEEEEEEcc--------CC--CEEEEEeCCCeEEEEECCC
Q 002778 309 HLYKLHRGITSATIQDICFSH--------YS--QWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSP--------Dg--~~LAsgS~DGTVhIWdI~~ 350 (882)
.+++|. ||+. .|...-|-. |. --|++-|.|.++++|.|..
T Consensus 291 pVh~F~-GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 291 PVHTFV-GHDD-VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ceeeec-Ccch-HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 556663 6653 344443432 33 2589999999999999964
No 289
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.58 E-value=0.15 Score=62.89 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=44.2
Q ss_pred CCeEEEEECCCCeEEEEEE-cCCcEEEEEEcCCEEEEEE-CC---------eEEEEECCCCcee
Q 002778 60 PTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAVGL-AT---------QIYCFDALTLENK 112 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLk-f~s~V~sV~~S~rlLAV~~-d~---------qI~IWDa~T~e~l 112 (882)
-++|-+-|.++-+.++++. |.+.|.++...+++|+++. .. -|+|||++.++.+
T Consensus 196 ~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 196 RGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred cceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 4889999999999999998 8889999999998877654 22 2899999987654
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.038 Score=64.42 Aligned_cols=85 Identities=21% Similarity=0.303 Sum_probs=60.8
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS 328 (882)
.+..|.+|+..|.+++--.+.+-+++||.|. ++++|.+++. +++-|+ + .+-++.. . +...|.+|.|-
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDK-TVKLWSik~E--gD~~~t------s--aCQfTY~-a-Hkk~i~~igfL 793 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDK-TVKLWSIKPE--GDEIGT------S--ACQFTYQ-A-HKKPIHDIGFL 793 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCc-eEEEEEeccc--cCcccc------c--eeeeEhh-h-ccCcccceeee
Confidence 3567889999999887666777888999855 5999999874 111111 1 1223321 2 23479999999
Q ss_pred cCCCEEEEEeCCCeEEEEEC
Q 002778 329 HYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 329 PDg~~LAsgS~DGTVhIWdI 348 (882)
.|-+++|++ ||-+|+||-
T Consensus 794 ~~lr~i~Sc--D~giHlWDP 811 (1034)
T KOG4190|consen 794 ADLRSIASC--DGGIHLWDP 811 (1034)
T ss_pred eccceeeec--cCcceeecc
Confidence 999998876 888999983
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=94.38 E-value=0.097 Score=56.80 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=70.3
Q ss_pred ccCCCceEEEEECCCCcE-EEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCccc-CCCCCCccccCCcc-
Q 002778 232 DMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMR-SGSGNHKYDWNSSH- 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~-v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~-~~sG~~~~d~sss~- 307 (882)
.|..+|.|.|||..+... +..+++|+.+|+-+-|+| ++..|.|++.||. +--||....+.. +.....-..|-+..
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~~~l~i~~~~s~~s~WLsgD~ 275 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDASTTFLSISNQASVISSWLSGDP 275 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCCceEEecCccccccccccCCc
Confidence 467899999999998754 456789999999999999 5689999999887 557887532210 00000111121110
Q ss_pred -cEEEEEEecccCCcEEEE-EEccCCCEEEEEeCCCeEEEEE
Q 002778 308 -VHLYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 308 -~~l~~L~RG~t~a~I~sL-aFSPDg~~LAsgS~DGTVhIWd 347 (882)
+-+.++ .+.-+....+| .|---|..|++|++-+-|.|++
T Consensus 276 v~s~i~i-~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 276 VKSRIEI-TSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccceEee-eccccccceeeeeeeccCceEEeccccceEEEec
Confidence 111111 12222222222 2445677899999988888864
No 292
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=94.15 E-value=0.93 Score=53.18 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=52.7
Q ss_pred CCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEE--cC---CCEEEEEecCCCcccCCCCCCccccCCccc
Q 002778 235 NAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTAS--VY---GNNINIFRIMPSCMRSGSGNHKYDWNSSHV 308 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~-~f~aH~spIsaLaFSPdGtlLATAS--~d---Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~ 308 (882)
.-|.|.|||....-.+. .|.+-.. +...|+|||.++-++- .. +..|+|||+. | .
T Consensus 338 l~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~--------g----------~ 397 (561)
T COG5354 338 LQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY--------G----------A 397 (561)
T ss_pred cccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEec--------C----------c
Confidence 34678899987664443 6665433 4467999999887663 22 5569999994 3 1
Q ss_pred EEEEEEecccCCcEEEEEEccCCCEEEEEeCCC
Q 002778 309 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 341 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DG 341 (882)
.+. ..+.+.|-|-+++.-++|...
T Consensus 398 ~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 398 KVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred hhh---------hhhhccccCCcccceeeccCC
Confidence 222 234578888899998888776
No 293
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.21 Score=59.60 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=61.5
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-ecccCCcE-EEEEEccCCCEEEE
Q 002778 259 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATI-QDICFSHYSQWIAI 336 (882)
Q Consensus 259 pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~-RG~t~a~I-~sLaFSPDg~~LAs 336 (882)
.|--+.|+|.-.++|++-.+|. +-+.++.- ++++.+. +|. .+ .+++|.|||+.||+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~ge-lli~R~n~------------------qRlwtip~p~~---~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGE-LLIHRLNW------------------QRLWTIPIPGE---NVTASLCWRPDGKLLAV 79 (665)
T ss_pred ceEEEEEcCccchhheeccCCc-EEEEEecc------------------ceeEeccCCCC---ccceeeeecCCCCEEEE
Confidence 4667889999999999999887 55888742 4777775 443 34 59999999999999
Q ss_pred EeCCCeEEEEECCCCCCccc
Q 002778 337 VSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 337 gS~DGTVhIWdI~~~gg~~~ 356 (882)
|=.||||+|-|++.++....
T Consensus 80 g~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EecCCeEEEEEccCCCceec
Confidence 99999999999998776654
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.56 E-value=11 Score=39.65 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=60.0
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEec
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 316 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG 316 (882)
|.|..++.. ++....+ ..-..-+.|+|+|+|+.|..+......|..|++... +. .+ ...+.+..+..+
T Consensus 115 g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~------~~---~~-~~~~~~~~~~~~ 182 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD------GG---EL-SNRRVFIDFPGG 182 (246)
T ss_dssp EEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT------TC---CE-EEEEEEEE-SSS
T ss_pred cceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEecccc------cc---ce-eeeeeEEEcCCC
Confidence 567677766 4433322 233456899999999988766655666777777421 10 00 001122232211
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 317 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 317 ~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
....-.+++..+|+..++.-..+.|.+|+-+
T Consensus 183 --~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 183 --PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp --SCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred --CcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 1236789999999988888888889998754
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=93.55 E-value=2.5 Score=46.54 Aligned_cols=57 Identities=16% Similarity=0.090 Sum_probs=39.8
Q ss_pred ccCCCceEEEEECCCCcEEE-----EeccCCCCeEEEEECCCCC--EEEEEEcCCCEEEEEecCC
Q 002778 232 DMDNAGIVVVKDFVTRAIIS-----QFKAHTSPISALCFDPSGT--LLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~-----~f~aH~spIsaLaFSPdGt--lLATAS~dGt~IrVWdi~p 289 (882)
.+.+||++-|||+....... +-..|.+.|....|++-|. +|.- ++.-.-+.|-|+.+
T Consensus 220 v~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~-sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 220 VVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI-SEHFSRVHVVDTRN 283 (344)
T ss_pred EEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE-ecCcceEEEEEccc
Confidence 56899999999998765432 2235899999999998664 3332 33233477888864
No 296
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=93.22 E-value=0.13 Score=59.66 Aligned_cols=115 Identities=14% Similarity=0.162 Sum_probs=78.6
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 328 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS 328 (882)
....|..|.+-|+.|-|+..|+.|+|+|.| ..|.|||-.. + ..+..+.-||.....+ -.|=
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD-~~vv~WdW~~-------~----------~~~l~f~SGH~~NvfQ-aKFi 194 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDD-LQVVVWDWVS-------G----------SPKLSFESGHCNNVFQ-AKFI 194 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCcc-ceEEeehhhc-------c----------Ccccccccccccchhh-hhcc
Confidence 456678899999999999999999999985 5688999753 2 2344455576654344 3365
Q ss_pred c--CCCEEEEEeCCCeEEEEECCCCCCcc---ccccccCCCCCCcccCCCCCCcccCCC
Q 002778 329 H--YSQWIAIVSSKGTCHVFVLSPFGGDS---GFQTLSSQGGDPYLFPVLSLPWWCTSS 382 (882)
Q Consensus 329 P--Dg~~LAsgS~DGTVhIWdI~~~gg~~---~l~~H~~~~~~~~~sp~~~lpw~~~s~ 382 (882)
| +.+.|++++.||-|++=.+...+... .+..|..++....+-|-...|.+..++
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge 253 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE 253 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCccccccc
Confidence 5 45789999999999998886655443 345665555544555544444444444
No 297
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=93.19 E-value=0.14 Score=57.32 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=78.1
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
+.+..|-|-|+++|. .+.|. ..+.|.|+.|.-.+.++..+...|. |.+.|+... + .| +.++...|
T Consensus 231 G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~r---n-qG--------~~~~a~rl 295 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCR---N-QG--------NGWCAQRL 295 (425)
T ss_pred cccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeec---c-cC--------CCcceEEE
Confidence 456678888888875 33444 5678999999999999998888776 889999642 1 11 22455555
Q ss_pred EecccCCcEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCCC---cccccccc
Q 002778 314 HRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGG---DSGFQTLS 361 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSP-Dg~~LAsgS~DGTVhIWdI~~~gg---~~~l~~H~ 361 (882)
. ++..|+++..=. ++++|++++.+|+|.+||+...++ .....+|.
T Consensus 296 y---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv 344 (425)
T KOG2695|consen 296 Y---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV 344 (425)
T ss_pred E---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence 4 334466655444 679999999999999999987776 44456664
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=93.18 E-value=0.51 Score=51.84 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=48.5
Q ss_pred EEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCe
Q 002778 263 LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGT 342 (882)
Q Consensus 263 LaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGT 342 (882)
++.+.+|++||.-- ++.|-|=..++.+ ++- .......+. ..-.-+-|+||||+..||.+.+.||
T Consensus 3 ~~~~~~Gk~lAi~q--d~~iEiRsa~Ddf------------~si-~~kcqVpkD-~~PQWRkl~WSpD~tlLa~a~S~G~ 66 (282)
T PF15492_consen 3 LALSSDGKLLAILQ--DQCIEIRSAKDDF------------SSI-IGKCQVPKD-PNPQWRKLAWSPDCTLLAYAESTGT 66 (282)
T ss_pred eeecCCCcEEEEEe--ccEEEEEeccCCc------------hhe-eEEEecCCC-CCchheEEEECCCCcEEEEEcCCCe
Confidence 67889999998654 4567665555432 111 111122221 1124678999999999999999999
Q ss_pred EEEEECCC
Q 002778 343 CHVFVLSP 350 (882)
Q Consensus 343 VhIWdI~~ 350 (882)
|+|||+..
T Consensus 67 i~vfdl~g 74 (282)
T PF15492_consen 67 IRVFDLMG 74 (282)
T ss_pred EEEEeccc
Confidence 99999863
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.98 E-value=0.89 Score=53.85 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=57.7
Q ss_pred ceEEEEECCCCcEEEEeccCCC--CeE-EEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 237 GIVVVKDFVTRAIISQFKAHTS--PIS-ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~s--pIs-aLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
..+.|||+.+|...+.|..-.+ +++ -..||.|++++|--.. ..|.||+... -.++..
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~--~sisIyEtps------------------f~lld~ 341 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG--NSISIYETPS------------------FMLLDK 341 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc--ceEEEEecCc------------------eeeecc
Confidence 4699999999999888877333 222 4789999999987664 4589999831 122222
Q ss_pred EecccCCcEEEEEEccCCCEEEEEe
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVS 338 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS 338 (882)
+......|.+..|||-++.||--+
T Consensus 342 -Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 342 -KSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred -cccCCccccCcccCCCcceEEEEc
Confidence 223334689999999998888654
No 300
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.95 E-value=13 Score=41.21 Aligned_cols=50 Identities=10% Similarity=0.195 Sum_probs=39.8
Q ss_pred CeEEEEECCCC-------eEEEEEEcCCcEEEEEEcCCEEEEEECCeEEEEECCCCc
Q 002778 61 TAVRFYSFQSH-------CYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLE 110 (882)
Q Consensus 61 ~tVrlWDlkTG-------~~V~tLkf~s~V~sV~~S~rlLAV~~d~qI~IWDa~T~e 110 (882)
+.|.++++.+. +.++..+++++|++|..-...|+++..++|++|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence 78999999885 344445689999999876767888889999999988776
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.29 E-value=2.1 Score=45.18 Aligned_cols=97 Identities=26% Similarity=0.272 Sum_probs=60.6
Q ss_pred eEEEEECCCCcEEEEecc-----CCCCeEEEEECCCCCEEEEEEcCCCE-----EEEEecCCCcccCCCCCCccccCCcc
Q 002778 238 IVVVKDFVTRAIISQFKA-----HTSPISALCFDPSGTLLVTASVYGNN-----INIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~a-----H~spIsaLaFSPdGtlLATAS~dGt~-----IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
.+.++|..+++....+.. .....+.++++|+|++.+|-+..... =+||.+.+. +
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~------~---------- 124 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD------G---------- 124 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT------S----------
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC------C----------
Confidence 345669888864433332 23457889999999999887653210 247776541 1
Q ss_pred cEEEEEEecccCCcEEEEEEccCCCEEE-EEeCCCeEEEEECCCCCC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYSQWIA-IVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg~~LA-sgS~DGTVhIWdI~~~gg 353 (882)
.+..+..+.. .-..|+|+||++.|. +-+..+.|..|+++..+.
T Consensus 125 -~~~~~~~~~~--~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 125 -KVTVVADGLG--FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp -EEEEEEEEES--SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred -eEEEEecCcc--cccceEECCcchheeecccccceeEEEecccccc
Confidence 2222323332 368899999999775 567788899999876544
No 302
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=92.20 E-value=0.26 Score=55.33 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=77.4
Q ss_pred CCccCCCccccccccccccCCCceEEEEECCCC-c--EEEEeccCC-----CCeEEEEECCCC-CEEEEEEcCCCEEEEE
Q 002778 215 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-A--IISQFKAHT-----SPISALCFDPSG-TLLVTASVYGNNINIF 285 (882)
Q Consensus 215 s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~-~--~v~~f~aH~-----spIsaLaFSPdG-tlLATAS~dGt~IrVW 285 (882)
.++|.|++...... ..|=.|.+|.+.-- + .+..++.|. .-|++..|+|.- .+++-.|.+|+ ||+-
T Consensus 168 NSIS~NsD~Et~lS-----ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLc 241 (433)
T KOG1354|consen 168 NSISVNSDKETFLS-----ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLC 241 (433)
T ss_pred eeeeecCccceEee-----ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEe
Confidence 34566776665432 34678999998532 2 234455553 468899999964 67777777787 9999
Q ss_pred ecCCCcccCCCCCCccccCCcccEEEEEEe------ccc--CCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 286 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHR------GIT--SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 286 di~p~~~~~~sG~~~~d~sss~~~l~~L~R------G~t--~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
|+..... .| .+..+++... +++ -+.|.+|.||+.|+|+++-+- -||+|||++....++
T Consensus 242 DmR~~aL--------Cd---~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv 307 (433)
T KOG1354|consen 242 DMRQSAL--------CD---AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPV 307 (433)
T ss_pred echhhhh--------hc---chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcc
Confidence 9963210 00 1112222110 011 136899999999999987643 589999997665544
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=91.91 E-value=0.44 Score=53.61 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=69.0
Q ss_pred ccCCCceEEEEECCCC----cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 232 DMDNAGIVVVKDFVTR----AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~----~~v~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
.|...|.|.++|+..+ .-.++---|.+.|++|..-. ++.+|...+-+|+ |++||...... +
T Consensus 269 ~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~----~--------- 334 (425)
T KOG2695|consen 269 NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKC----K--------- 334 (425)
T ss_pred ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhc----c---------
Confidence 4678899999999865 22233334899999987655 7788877777786 99999864210 0
Q ss_pred ccEEEEEEecccCCc-EEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 307 HVHLYKLHRGITSAT-IQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 307 ~~~l~~L~RG~t~a~-I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+-+... .||-+.. -.-+-..+....|+++++|.-.|||.+..+
T Consensus 335 -~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 335 -KSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred -cceeee-ecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 112222 3554321 111234566788999999999999999864
No 304
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=91.87 E-value=0.23 Score=57.97 Aligned_cols=93 Identities=14% Similarity=0.189 Sum_probs=66.0
Q ss_pred EEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCC
Q 002778 241 VKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 320 (882)
Q Consensus 241 VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a 320 (882)
+|.-.+...-..+.+-..|+.+++|||-|++||+....| |.+|.-.. + ..+..++ ..
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~--V~~~~g~~-------~----------~~l~~~~----~~ 72 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG--VECWGGPS-------K----------AKLVRFR----HP 72 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhccc--eEEccccc-------h----------hheeeee----cC
Confidence 455455444455666778999999999999999887744 88998631 1 1333332 24
Q ss_pred cEEEEEEccCCCEEEEEeCCCe---------------EEEEECCCCCCccc
Q 002778 321 TIQDICFSHYSQWIAIVSSKGT---------------CHVFVLSPFGGDSG 356 (882)
Q Consensus 321 ~I~sLaFSPDg~~LAsgS~DGT---------------VhIWdI~~~gg~~~ 356 (882)
.|+.+.|||.++||.+-+..+. +.|||+..+.-...
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s 123 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS 123 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEee
Confidence 6999999999999999887655 78888876443333
No 305
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=91.84 E-value=2.1 Score=52.53 Aligned_cols=99 Identities=16% Similarity=0.288 Sum_probs=70.1
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC---CC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP---SG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSP---dG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
.++..|.|.|||+..+..+..|..|.++|..|+|=| +. .+|+.-.. -..|-+|++.+ |
T Consensus 84 saD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~-ss~lvLwntdt-------G---------- 145 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG-SSTLVLWNTDT-------G---------- 145 (1062)
T ss_pred eccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC-CcEEEEEEccC-------C----------
Confidence 457889999999999999999999999999988854 33 23333222 24588999854 4
Q ss_pred cEEEEEEecccCCcEEEEEEcc-CCCEEEEEeCCCeEEEEECCC
Q 002778 308 VHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSP-Dg~~LAsgS~DGTVhIWdI~~ 350 (882)
.++++..-++ ....|+.|-| |.+.++..+..|.+-+-+.-.
T Consensus 146 ~k~Wk~~ys~--~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 146 EKFWKYDYSH--EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred ceeeccccCC--cceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence 3566543332 2455688887 568888888899887776543
No 306
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.72 E-value=0.46 Score=57.41 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=73.7
Q ss_pred cCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 233 MDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~-~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
|...|.|.+|.-..+.... ...+-...+..++.|++..++|.|+..| .|-||.+... +.+ ..+|
T Consensus 51 GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g-~V~v~ql~~~----~p~----------~~~~ 115 (726)
T KOG3621|consen 51 GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASG-RVSVFQLNKE----LPR----------DLDY 115 (726)
T ss_pred ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCc-eEEeehhhcc----CCC----------ccee
Confidence 3557899999988765432 2333456778889999988888777755 5889988531 111 1222
Q ss_pred EEEeccc--CCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 312 KLHRGIT--SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 312 ~L~RG~t--~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
+.+++. ...|++++||+|++.|-+|.+.|+|++-.++.
T Consensus 116 -~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 -VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred -eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 233433 56899999999999999999999999988876
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.40 E-value=12 Score=42.62 Aligned_cols=59 Identities=10% Similarity=-0.037 Sum_probs=42.3
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEE-EEEcCCEEEEE-ECCeEEEEECCCCceeEEEec
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCM-VRCSPRIVAVG-LATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~s-V~~S~rlLAV~-~d~qI~IWDa~T~e~l~tL~t 117 (882)
.++.|.-+|.+||+.+...+....+.+ ..+...+|.++ .++.|+.+|+.|++.+++...
T Consensus 128 ~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 128 EKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 356788899999999988876655433 22334445544 467899999999999888753
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=91.40 E-value=1.3 Score=49.46 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=54.9
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-----e-----cccCCcE-
Q 002778 254 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-----R-----GITSATI- 322 (882)
Q Consensus 254 ~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~-----R-----G~t~a~I- 322 (882)
..-.+.|+.+.|+++|+++++-+. -+++|||+...- ..+.++. + -..+..|
T Consensus 277 ~eivsSISD~kFs~ngryIlsRdy--ltvkiwDvnm~k----------------~pikTi~~h~~l~~~l~d~YEnDaif 338 (460)
T COG5170 277 EEIVSSISDFKFSDNGRYILSRDY--LTVKIWDVNMAK----------------NPIKTIPMHCDLMDELNDVYENDAIF 338 (460)
T ss_pred HHHhhhhcceEEcCCCcEEEEecc--ceEEEEeccccc----------------CCceeechHHHHHHHHHhhhhcccee
Confidence 344568999999999999998776 358999996420 1222210 0 0001112
Q ss_pred --EEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 323 --QDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 323 --~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
..+.||-|++.+.+||-.+..-||.....
T Consensus 339 dkFeisfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 339 DKFEISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred eeEEEEecCCcccccccccccceeeeccccC
Confidence 35899999999999999999999885543
No 309
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.30 E-value=1.7 Score=50.71 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=67.8
Q ss_pred CCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc
Q 002778 213 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 292 (882)
Q Consensus 213 s~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~ 292 (882)
......++++++.+++.. ..+..-.|.+.|+.++.. ..+..-.+.-..=.|+|||+.||-+|..+..-+||.....
T Consensus 239 ~~~~P~fspDG~~l~f~~-~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~-- 314 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSS-SRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE-- 314 (425)
T ss_pred ccCCccCCCCCCEEEEEE-CCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC--
Confidence 334455667777777653 222333566778877653 3333222222245799999999988776666688887542
Q ss_pred cCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC-Ce--EEEEECCC
Q 002778 293 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GT--CHVFVLSP 350 (882)
Q Consensus 293 ~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D-GT--VhIWdI~~ 350 (882)
| ......++.-| ... .-.|||||++|+..+.. |- |-+.++..
T Consensus 315 ----g--------~~~~riT~~~~--~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 315 ----G--------SQVTRLTFSGG--GNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred ----C--------CceeEeeccCC--CCc--CccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 2 11222333212 111 56799999999988753 43 44444433
No 310
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.26 E-value=0.48 Score=38.76 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=28.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 319 SATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 319 ~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
++.|..++|||....||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3579999999999999999999999999984
No 311
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=91.14 E-value=0.67 Score=51.28 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=67.4
Q ss_pred ccCCCceEEEEECC-CCcEE-EEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCccc
Q 002778 232 DMDNAGIVVVKDFV-TRAII-SQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 308 (882)
Q Consensus 232 tgs~dG~V~VWDl~-s~~~v-~~f~aH~spIsaLaFSP-dGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~ 308 (882)
+|+.||.+.-||++ .++.+ ...+-|+..|.+|.=+| .++++|||+.|.+ |++||+..- | +
T Consensus 183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm------~----------k 245 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNM------G----------K 245 (339)
T ss_pred ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcc------c----------C
Confidence 67899999999998 33444 33677999999988876 6899999999665 999998631 2 2
Q ss_pred EEEEEEecccCCcEEEEEEccCC--CEEEEEeCCCeEEEEECCCCCC
Q 002778 309 HLYKLHRGITSATIQDICFSHYS--QWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPDg--~~LAsgS~DGTVhIWdI~~~gg 353 (882)
.+++..- ..-||-|.++|-- +.||++=.. -++|-+++....
T Consensus 246 Pl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 246 PLFKAKV---GGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVL 288 (339)
T ss_pred ccccCcc---ccceEEEEecchhhhHHHHHHHhc-CceEEEeccccc
Confidence 3333211 1347778887753 334444333 367777765443
No 312
>PRK02888 nitrous-oxide reductase; Validated
Probab=90.79 E-value=2.2 Score=51.89 Aligned_cols=116 Identities=12% Similarity=0.098 Sum_probs=69.1
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE---cCCCE-----------EEEEecCC--CcccCC-
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS---VYGNN-----------INIFRIMP--SCMRSG- 295 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS---~dGt~-----------IrVWdi~p--~~~~~~- 295 (882)
....+++.+.|..+.++..++.--. ....++|+|||+++.+.+ ..|.. +.+|++.. ....++
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK 289 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGK 289 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCC
Confidence 4667899999999988887776533 335689999999998775 32222 33333321 000010
Q ss_pred ----CCC--CccccCC----cccEEEEEEecccCCcEEEEEEccCCCEEEEEe-CCCeEEEEECCCCC
Q 002778 296 ----SGN--HKYDWNS----SHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 352 (882)
Q Consensus 296 ----sG~--~~~d~ss----s~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS-~DGTVhIWdI~~~g 352 (882)
.+. .-.|-.. ....++.+.-| ...+.|++||||+++.+++ .+.||.|.|+....
T Consensus 290 ~~~V~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 290 FKTIGGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EEEECCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 000 0000000 01123333322 3467899999999988876 48999999998754
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.64 E-value=1.4 Score=51.21 Aligned_cols=113 Identities=16% Similarity=0.201 Sum_probs=74.1
Q ss_pred CceEEEEECCCCc-EEEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCC-cccEEEE
Q 002778 236 AGIVVVKDFVTRA-IISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS-SHVHLYK 312 (882)
Q Consensus 236 dG~V~VWDl~s~~-~v~~f-~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ss-s~~~l~~ 312 (882)
+|.|.|+|-.... .+..+ .-|..||..+.++|.|...++....| .|.-|.....+... . ...+|.- +-.-+|.
T Consensus 121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g-mVEyWs~e~~~qfP--r-~~l~~~~K~eTdLy~ 196 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG-MVEYWSAEGPFQFP--R-TNLNFELKHETDLYG 196 (558)
T ss_pred CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc-eeEeecCCCcccCc--c-ccccccccccchhhc
Confidence 4667777755433 23333 35999999999999999999888755 69999986321100 0 0011111 0012333
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+... .....++.|||+|..+++-+.|.+|++|++..+.-.
T Consensus 197 f~K~--Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 197 FPKA--KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cccc--ccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 3221 235789999999999999999999999999865433
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=90.42 E-value=0.56 Score=55.76 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=44.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
.|..||.|.+||...+ +.++..+.-..+.++|+|+|.+++.|+..|. |.+||+.-
T Consensus 276 lGC~DgSiiLyD~~~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~AL 330 (545)
T PF11768_consen 276 LGCEDGSIILYDTTRG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMAL 330 (545)
T ss_pred EEecCCeEEEEEcCCC--eeeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeec
Confidence 3688999999999766 3333344456688999999999999999885 99999864
No 315
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.70 E-value=4.8 Score=50.48 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=43.7
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
.|+.+|.||+||-...+....|.+-..||..|..+.||++|+.... +.+-|+++.
T Consensus 593 vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t~ 647 (794)
T PF08553_consen 593 VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDTL 647 (794)
T ss_pred EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEEe
Confidence 3578999999997666666778888899999999999997765443 357788874
No 316
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=89.09 E-value=1 Score=50.60 Aligned_cols=99 Identities=15% Similarity=0.258 Sum_probs=58.8
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc----cCCCCCCccccCCcccEEE
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM----RSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~----~~~sG~~~~d~sss~~~l~ 311 (882)
.+.+.|||+.+++....... ...+....|||+|+.||-... +.|.+++...... .+|.. .++
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~--~nly~~~~~~~~~~~lT~dg~~-----------~i~ 87 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD--NNLYLRDLATGQETQLTTDGEP-----------GIY 87 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET--TEEEEESSTTSEEEESES--TT-----------TEE
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec--CceEEEECCCCCeEEeccccce-----------eEE
Confidence 46799999999765444433 677889999999999998874 5688888743100 00000 000
Q ss_pred EEEecccC--------CcEEEEEEccCCCEEEEEeC-CCeEEEEECCCC
Q 002778 312 KLHRGITS--------ATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPF 351 (882)
Q Consensus 312 ~L~RG~t~--------a~I~sLaFSPDg~~LAsgS~-DGTVhIWdI~~~ 351 (882)
-|... ..-..+-|||||++||.... +..|+.+.+..+
T Consensus 88 ---nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~ 133 (353)
T PF00930_consen 88 ---NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY 133 (353)
T ss_dssp ---ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE
T ss_pred ---cCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeecc
Confidence 01100 01135889999999998764 445777766544
No 317
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.55 E-value=0.75 Score=55.68 Aligned_cols=98 Identities=16% Similarity=0.318 Sum_probs=68.7
Q ss_pred cCCCceEEEEECCCC---------------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCC
Q 002778 233 MDNAGIVVVKDFVTR---------------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG 297 (882)
Q Consensus 233 gs~dG~V~VWDl~s~---------------~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG 297 (882)
|+.||.++|..+.+. ..-+++.+|...|.-+.|+-+.+.|-|.+.+| .|.||=+-. |
T Consensus 32 gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G-lIiVWmlyk-------g 103 (1189)
T KOG2041|consen 32 GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG-LIIVWMLYK-------G 103 (1189)
T ss_pred ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc-eEEEEeeec-------c
Confidence 466777777766532 12357789999999999999999998888766 689998743 2
Q ss_pred CCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 298 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 298 ~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
.|-. .+.. .| ....|.+++|..||+.|+..-.||.|.|=.+
T Consensus 104 ----sW~E---EMiN-nR--nKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 104 ----SWCE---EMIN-NR--NKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred ----cHHH---HHhh-Cc--CccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 1211 0100 12 2247999999999999998888887755433
No 318
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=87.92 E-value=3.8 Score=46.92 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=45.4
Q ss_pred ccCCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 232 DMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f-~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
+++.|+.|+|-....-..+..| -+|+.-|+.|+.-++ .+|++||.|++ +++||+..
T Consensus 168 taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~s 224 (390)
T KOG3914|consen 168 TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDITS 224 (390)
T ss_pred EecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEeccc
Confidence 5789999999777766666655 479999999999876 56889998776 89999964
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.70 E-value=1 Score=55.55 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=69.8
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
+....|.|.||- .+|++..... ..-.+++|||+|.--+||.+=..| .+.||...+ +...
T Consensus 36 S~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g-~~~v~~~~~------------------~e~h 94 (1416)
T KOG3617|consen 36 SPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMG-VSDVQKTNT------------------TETH 94 (1416)
T ss_pred cCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccc-eeEEEecCC------------------ceee
Confidence 345568888874 3454332221 011245699999988888876656 589999853 1223
Q ss_pred EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 312 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 312 ~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+.. -.+++.|+-+.||+||..|+++..=|.||+|.....|..
T Consensus 95 tv~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 95 TVV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI 136 (1416)
T ss_pred eec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccc
Confidence 332 234678999999999999999999999999998765443
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.12 E-value=18 Score=46.85 Aligned_cols=124 Identities=18% Similarity=0.262 Sum_probs=74.7
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d--Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
..|+|||-. |..-.+=..-..-=.+|+|=|+|.++|+--.+ +..|.+|.-. |.. +--+.++
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN------GL~----------hg~f~l~ 284 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN------GLR----------HGEFVLP 284 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC------Ccc----------ccccccC
Confidence 689999987 43221111111222469999999999986332 2247787742 211 1122332
Q ss_pred ecccCCcEEEEEEccCCCEEEEE---eCCCeEEEEECCCCCCccccccccCCCCCCcccCCCCCCcccCCCCccccccc-
Q 002778 315 RGITSATIQDICFSHYSQWIAIV---SSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCV- 390 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsg---S~DGTVhIWdI~~~gg~~~l~~H~~~~~~~~~sp~~~lpw~~~s~~~~~Q~~~- 390 (882)
+-.....|..|+|+.++..||+. ....-|.+|-+..+ -||..-+|.+.|...
T Consensus 285 ~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny------------------------hWYLKq~l~~~~~~~~ 340 (1265)
T KOG1920|consen 285 FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY------------------------HWYLKQELQFSQKALL 340 (1265)
T ss_pred CcccccchheeeecCCCCceeeeecccccceEEEEEecCe------------------------EEEEEEEEeccccccc
Confidence 22222248999999999999983 33444999988654 477777777777554
Q ss_pred --CCCCCccccce
Q 002778 391 --LPPPPVTLSVV 401 (882)
Q Consensus 391 --~~~~~~~ls~v 401 (882)
-|..+.+|.+.
T Consensus 341 ~W~p~~~~~L~v~ 353 (1265)
T KOG1920|consen 341 MWDPVTEKTLHVL 353 (1265)
T ss_pred cccCCCceeEEEE
Confidence 34445566554
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.99 E-value=2.2 Score=52.59 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=65.1
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
|...|.|.+++... .. .+...|... +-+|.++||+|.||+ +.|..+-+. .-.+.+.
T Consensus 55 GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~---------------~~~~~~d 110 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTD---------------DEITQYD 110 (846)
T ss_pred ccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCc-EEEeeccCC---------------ccceeEe
Confidence 45789999999863 33 444556544 789999999999997 667776431 0124455
Q ss_pred EEecccCCcEEEEEEccC-----CCEEEEEeCCCeEEEEECCCCCCc
Q 002778 313 LHRGITSATIQDICFSHY-----SQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPD-----g~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+.| +|.+|+|+|| ++.+++|+..| +-++.-+-.|..
T Consensus 111 f~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk 151 (846)
T KOG2066|consen 111 FKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK 151 (846)
T ss_pred cCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence 543 6899999999 78899999998 777765444433
No 322
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.62 E-value=0.75 Score=57.98 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=58.2
Q ss_pred CCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEeccc-CCcEEEEEEccCCCEEEEEeCCCeEEE
Q 002778 267 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 267 PdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t-~a~I~sLaFSPDg~~LAsgS~DGTVhI 345 (882)
-.+..+|.++..|+ +-.+|.. | .+.-+.+|.. ..+|.+++|+.||+.++.|-.+|-|.+
T Consensus 97 ~~~~~ivi~Ts~gh-vl~~d~~--------~-----------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v 156 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGH-VLLSDMT--------G-----------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTV 156 (1206)
T ss_pred eeeeeEEEEcCchh-hhhhhhh--------c-----------ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEE
Confidence 35678888888776 5677763 1 1222333322 247999999999999999999999999
Q ss_pred EECCCCCCccccccccCCCCCC
Q 002778 346 FVLSPFGGDSGFQTLSSQGGDP 367 (882)
Q Consensus 346 WdI~~~gg~~~l~~H~~~~~~~ 367 (882)
||+........+..|.+++.+.
T Consensus 157 ~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 157 WDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred EEccCCcceeeeeecCCccceE
Confidence 9999877666676666555443
No 323
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=86.60 E-value=2.2 Score=49.89 Aligned_cols=98 Identities=20% Similarity=0.282 Sum_probs=61.1
Q ss_pred ceEEEEECCCCcE--EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 237 GIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 237 G~V~VWDl~s~~~--v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
..+.++|+.+++. +..+.+|.. +-+|+|||++||-++..+....||=+.-. + ..+.+|-
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~------~----------~~~~~Lt 278 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLD------G----------KNLPRLT 278 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCC------C----------Ccceecc
Confidence 5688999988753 445555544 46899999998876654434555544210 2 1233343
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCC-CeEEEEECCCCCCcc
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGGDS 355 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~D-GTVhIWdI~~~gg~~ 355 (882)
.+.... ..=+|||||++|+-.|++ |.-.||-.+..++.+
T Consensus 279 ~~~gi~--~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 279 NGFGIN--TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred cCCccc--cCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 333222 356899999999987765 556777776655543
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=85.95 E-value=54 Score=37.07 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=32.9
Q ss_pred CCceEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 002778 235 NAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTAS 276 (882)
Q Consensus 235 ~dG~V~VWDl~-s~~~v~~f~aH~spIsaLaFSPdGtlLATAS 276 (882)
..|.|-|||.. +.+.+..|..|--.---|.+.|||..|+.|-
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 35899999998 6778888887754445688999998787764
No 325
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=85.95 E-value=1.9 Score=35.28 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=27.0
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEec
Q 002778 257 TSPISALCFDPSGTLLVTASVYGNNINIFRI 287 (882)
Q Consensus 257 ~spIsaLaFSPdGtlLATAS~dGt~IrVWdi 287 (882)
..+|..++|+|...+||.++.+|. |.||++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEEC
Confidence 356999999999999999999886 889998
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=85.75 E-value=20 Score=40.91 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=31.4
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCCEEEEEe
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFR 286 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsa-LaFSPdGtlLATAS~dGt~IrVWd 286 (882)
++.+|.|.+.|..+|+.+...+-+...+.+ ..+ .+| .|..++.+|+ +..|+
T Consensus 341 ~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G~-l~~~~ 392 (394)
T PRK11138 341 GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD-KLLIQARDGT-VYAIT 392 (394)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC-EEEEEeCCce-EEEEe
Confidence 356899999999999988777644333332 112 244 4555676675 44444
No 327
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=84.33 E-value=2.4 Score=49.65 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=83.4
Q ss_pred CCCCCccCCCccccccccccccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEecC
Q 002778 212 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPS--GTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 212 gs~s~~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~v~~f~-aH~spIsaLaFSPd--GtlLATAS~dGt~IrVWdi~ 288 (882)
|...++.++..+..++ +++.|-.|.+||-.+++.+..|. +|...|---.|=|. -+.|++.+.||. +|+=.+.
T Consensus 143 GcVntV~FN~~Gd~l~----SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq-vr~s~i~ 217 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLA----SGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ-VRVSEIL 217 (559)
T ss_pred CccceeeecccCceee----ccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc-eeeeeec
Confidence 3445667776666654 67889999999999988777765 78888877777763 468899999876 7887774
Q ss_pred CCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCE-EEEEeCCCeEEEEECCCC
Q 002778 289 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 289 p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~-LAsgS~DGTVhIWdI~~~ 351 (882)
.. | ....+-+-+.+...|.-++.-|++.+ |.+++.|+.+.=+|+...
T Consensus 218 ~t------~----------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~ 265 (559)
T KOG1334|consen 218 ET------G----------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD 265 (559)
T ss_pred cc------c----------ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccC
Confidence 31 2 01111112334456888888888754 778889999988888654
No 328
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.12 E-value=3.1 Score=50.20 Aligned_cols=55 Identities=16% Similarity=0.343 Sum_probs=46.3
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeE-EEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPIS-ALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIs-aLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
+-.+|.|.+.-+. -+.+.+|.-|..++. +++|.|||++||.|=.||+ |++-|+..
T Consensus 38 ~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~ 93 (665)
T KOG4640|consen 38 RTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEK 93 (665)
T ss_pred eccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccC
Confidence 4567888888887 566788887888887 9999999999999998876 99999964
No 329
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=83.94 E-value=1.2 Score=48.62 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=60.2
Q ss_pred ceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe
Q 002778 237 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 315 (882)
Q Consensus 237 G~V~VWDl~s~~~v~-~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R 315 (882)
+..++|++.-.+.+. ..++ ...|.+++-+|.-+.|+.++.++..+-|||... .+ ...-+++
T Consensus 159 d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn-------~~-------~p~S~l~--- 220 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARN-------VA-------MPVSLLK--- 220 (319)
T ss_pred cceeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEccc-------cc-------chHHHHH---
Confidence 345566665332211 1112 234999999997766655554556799999853 10 0011222
Q ss_pred cccCCcEEEEEEcc-CCCEEEEEeCCCeEEEEECCC
Q 002778 316 GITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 316 G~t~a~I~sLaFSP-Dg~~LAsgS~DGTVhIWdI~~ 350 (882)
. +.+.|+.|-|.| ++..|.++|.||.+--||-++
T Consensus 221 a-hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 221 A-HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred H-hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2 236799999998 568899999999998888764
No 330
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=83.41 E-value=2.3 Score=48.28 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=44.7
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC----CEEEEEE-CCeEEEEECCCCceeEEEec
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~----rlLAV~~-d~qI~IWDa~T~e~l~tL~t 117 (882)
..+.|-+||++|++.+..+.....+.+|..+. .++++.. +..|.+||+.|++.++++..
T Consensus 267 pgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 34788899999999999998777788888874 3445544 46799999999999998864
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.96 E-value=8.9 Score=47.54 Aligned_cols=102 Identities=19% Similarity=0.288 Sum_probs=70.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC-----CCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCc
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-----GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 306 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPd-----GtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss 306 (882)
+++.||+|.|--+-+.+...++.-+ .||.+++|+|+ .+.+++++..| +-++.-.. -+.
T Consensus 88 sCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag--lvL~er~w--------------lgn 150 (846)
T KOG2066|consen 88 SCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNW--------------LGN 150 (846)
T ss_pred EecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcce--EEEehhhh--------------hcC
Confidence 5789999999998888766665533 69999999998 56788888866 44655321 111
Q ss_pred ccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccc
Q 002778 307 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 356 (882)
Q Consensus 307 ~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~ 356 (882)
...+ .+..| ...|.+|.| .|.+||=++++| |+|||+........
T Consensus 151 k~~v-~l~~~--eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~ 194 (846)
T KOG2066|consen 151 KDSV-VLSEG--EGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTN 194 (846)
T ss_pred ccce-eeecC--ccceEEEEe--cCcEEEEecCCC-cEEEeccccceeec
Confidence 1111 23222 246999998 467999888888 79999987554433
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=82.79 E-value=1.1e+02 Score=36.30 Aligned_cols=58 Identities=12% Similarity=-0.075 Sum_probs=40.2
Q ss_pred CCeEEEEECCCCeEEEEEEcCCc---------EEEEEEcC-CEEEE-EECCeEEEEECCCCceeEEEec
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSS---------VCMVRCSP-RIVAV-GLATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~---------V~sV~~S~-rlLAV-~~d~qI~IWDa~T~e~l~tL~t 117 (882)
.+.|.-.|++||+.+..++.... ...+.... +.|.+ ..++.|+.+|+.|++.+.+...
T Consensus 70 ~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 70 HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 47788889999998887764321 11233333 45555 4578899999999999888754
No 333
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=82.72 E-value=13 Score=35.98 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=44.9
Q ss_pred eEEEEE---CCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEE
Q 002778 260 ISALCF---DPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 335 (882)
Q Consensus 260 IsaLaF---SPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LA 335 (882)
|++|++ +-|| .-|+.||.| ..||||+-. ..++++.. ...|.+|+=... ..++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D-~~IRvf~~~-------------------e~~~Ei~e---~~~v~~L~~~~~-~~F~ 57 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDD-FEIRVFKGD-------------------EIVAEITE---TDKVTSLCSLGG-GRFA 57 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCC-cEEEEEeCC-------------------cEEEEEec---ccceEEEEEcCC-CEEE
Confidence 455555 4454 467777774 569999963 25666542 346888877766 5688
Q ss_pred EEeCCCeEEEEEC
Q 002778 336 IVSSKGTCHVFVL 348 (882)
Q Consensus 336 sgS~DGTVhIWdI 348 (882)
.+...|||-||+-
T Consensus 58 Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 58 YALANGTVGVYDR 70 (111)
T ss_pred EEecCCEEEEEeC
Confidence 9999999988865
No 334
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=82.20 E-value=3.9 Score=45.80 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=27.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc
Q 002778 321 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 355 (882)
Q Consensus 321 ~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~ 355 (882)
.|.++.||+.|+||++-+- -||+|||++....+.
T Consensus 282 SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi 315 (460)
T COG5170 282 SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI 315 (460)
T ss_pred hhcceEEcCCCcEEEEecc-ceEEEEecccccCCc
Confidence 5889999999999988754 589999998765443
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=82.12 E-value=1.6 Score=52.62 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=36.8
Q ss_pred CCCceEEEEEC-CCC-cEEEEeccCCC----CeEEEEECCCCC-EEEEEEcCCCEEEEEecCC
Q 002778 234 DNAGIVVVKDF-VTR-AIISQFKAHTS----PISALCFDPSGT-LLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 234 s~dG~V~VWDl-~s~-~~v~~f~aH~s----pIsaLaFSPdGt-lLATAS~dGt~IrVWdi~p 289 (882)
..+|.|.+||. .+- ..+.++...+. .+.++++.|.-+ +||+.+.+-.+|+++|+..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 34888999993 222 22233322222 389999999654 6778887777899999864
No 336
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.15 E-value=0.88 Score=56.30 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=75.5
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-EEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt-~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
.|...|.|+++++.+|.......+|.++|+-|.=+-||.++.|.|.-.. ...+|+.... + ...
T Consensus 1118 vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~------~----------~~~ 1181 (1516)
T KOG1832|consen 1118 VGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST------G----------GPR 1181 (1516)
T ss_pred eeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc------c----------Ccc
Confidence 3578899999999999999999999999999999999988777654222 4569998421 1 122
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+.+ ++ =.++.||...+.-+.|+....++|||+++.
T Consensus 1182 Hsf-~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1182 HSF-DE-----DKAVKFSNSLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred ccc-cc-----cceeehhhhHHHHHhcccccceEEEecccC
Confidence 222 12 356889998888888888888999999875
No 337
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=80.63 E-value=13 Score=38.23 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=54.2
Q ss_pred CceEEEEECCCCcEEEEecc---CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 236 AGIVVVKDFVTRAIISQFKA---HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~a---H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
+|+|..||..+|+.+-.... ...+ .+.++ +++.+|.+++.++ .|..||..+ | ..+++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~-~~~~~v~~~~~~~-~l~~~d~~t-------G----------~~~W~ 61 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGP-VATAV-PDGGRVYVASGDG-NLYALDAKT-------G----------KVLWR 61 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSE-EETEE-EETTEEEEEETTS-EEEEEETTT-------S----------EEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCc-cceEE-EeCCEEEEEcCCC-EEEEEECCC-------C----------CEEEE
Confidence 68999999999998877653 2222 22223 2455566666645 588999864 4 45555
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
+......... - ..++..|.+++.++.+..||+.++
T Consensus 62 ~~~~~~~~~~---~-~~~~~~v~v~~~~~~l~~~d~~tG 96 (238)
T PF13360_consen 62 FDLPGPISGA---P-VVDGGRVYVGTSDGSLYALDAKTG 96 (238)
T ss_dssp EECSSCGGSG---E-EEETTEEEEEETTSEEEEEETTTS
T ss_pred eeccccccce---e-eecccccccccceeeeEecccCCc
Confidence 5421111111 1 234455566667788888886654
No 338
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.57 E-value=12 Score=42.72 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=63.3
Q ss_pred CCccccccccc-cccCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCC----------CEEEEEec
Q 002778 220 NSVWKVGRHAG-ADMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYG----------NNINIFRI 287 (882)
Q Consensus 220 ss~~k~~~la~-~tgs~dG~V~VWDl~s~~~v~~-f~aH~spIsaLaFSPdGtlLATAS~dG----------t~IrVWdi 287 (882)
+++++.+++.- ..|+...+|+|+|+.+++.+.. |..- . -..++|.+||+.|.-...+. ..|..|++
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~ 209 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-K-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL 209 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-E-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-c-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence 34445444432 1345557899999999987653 2321 1 12399999999877665432 23556666
Q ss_pred CCCcccCCCCCCccccCCcccEEEEEEecccCCc-EEEEEEccCCCEEEEEeCCCe----EEEEECCC
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT-IQDICFSHYSQWIAIVSSKGT----CHVFVLSP 350 (882)
Q Consensus 288 ~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~-I~sLaFSPDg~~LAsgS~DGT----VhIWdI~~ 350 (882)
.+ + ......+++ +..... ..++..|+|++||...+..++ +++.++..
T Consensus 210 gt-------~------~~~d~lvfe---~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 210 GT-------P------QSEDELVFE---EPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp TS--------------GGG-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred CC-------C------hHhCeeEEe---ecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 32 1 011123443 333333 678999999999887654433 44445443
No 339
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=80.50 E-value=3.3 Score=51.02 Aligned_cols=101 Identities=24% Similarity=0.326 Sum_probs=76.0
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC------C---CEEEEEecCCCcccCCCCCCccc
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY------G---NNINIFRIMPSCMRSGSGNHKYD 302 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d------G---t~IrVWdi~p~~~~~~sG~~~~d 302 (882)
.|-+.|+|.|+|+.++.+-+.|..|++.|.+|.|--.-+ |+|.+.. | +.+.|=|+.+ |
T Consensus 442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrt-------G----- 508 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRT-------G----- 508 (1062)
T ss_pred eecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEccc-------c-----
Confidence 467889999999999999999999999999999976644 5555431 1 1233445533 2
Q ss_pred cCCcccEEEEEE--ecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 002778 303 WNSSHVHLYKLH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 303 ~sss~~~l~~L~--RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~ 351 (882)
.-..|| ++...+.|..|.-|.-++|||..=.|.-+.|||+.+.
T Consensus 509 ------lsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 509 ------LSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred ------cccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 112222 5666678999999999999999999999999999653
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=80.43 E-value=12 Score=45.76 Aligned_cols=106 Identities=9% Similarity=0.062 Sum_probs=69.3
Q ss_pred CceEEEEECCC-----CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 236 AGIVVVKDFVT-----RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 236 dG~V~VWDl~s-----~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
++.|.|.|..+ .+.+..+.--. ....+++||||++++.++.-...+-|.|+..... ...+ ..+ ......
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~-~~~~--~~~--~~~~vv 368 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD-LFDG--KIK--PRDAVV 368 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhh-hhhc--cCC--ccceEE
Confidence 46799999988 45566665433 3467999999999998887666799999964100 0000 000 001123
Q ss_pred EEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 311 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 311 ~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
.+..-|..+ ...+|.++|....+--.|..|-.|++..
T Consensus 369 aevevGlGP---LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPELGLGP---LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EeeccCCCc---ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333334332 4578999998888888899999999976
No 341
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.40 E-value=3.8 Score=50.20 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=72.5
Q ss_pred EEEEECCC---CcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE
Q 002778 239 VVVKDFVT---RAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 314 (882)
Q Consensus 239 V~VWDl~s---~~~v~~f~aH~spIsaLaFSPdG-tlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~ 314 (882)
-.||++.. ..+--.+.+|...|+.+.|+|+- ..|||++.| +.+..||+... ...+|.+.
T Consensus 93 aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvd-t~vh~wd~rSp----------------~~p~ys~~ 155 (1081)
T KOG0309|consen 93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD-TYVHAWDMRSP----------------HRPFYSTS 155 (1081)
T ss_pred hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccc-ccceeeeccCC----------------Ccceeeee
Confidence 34666642 23345567899999999999976 489999994 56999999531 13444432
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc-ccccccCCCC
Q 002778 315 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQGG 365 (882)
Q Consensus 315 RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~-~l~~H~~~~~ 365 (882)
--++. -..|+|+--.--+.+++...-|.|||+..++.+. .+++|.+.+.
T Consensus 156 ~w~s~--asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn 205 (1081)
T KOG0309|consen 156 SWRSA--ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVN 205 (1081)
T ss_pred ccccc--CceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeee
Confidence 11122 2458898765566667777889999998766554 5677876543
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=79.51 E-value=20 Score=45.16 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=59.6
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCC-eEEEEEC-------CCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCC
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSP-ISALCFD-------PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 305 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~sp-IsaLaFS-------PdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ss 305 (882)
.....|.-.|+..|+++..+..|... |..++=+ +..++|... .+.+..||.+-. |.. ..+.
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls---~n~lfriDpR~~------~~k-~v~~- 569 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLS---DNSLFRIDPRLS------GNK-LVDS- 569 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEEC---CCceEEeccCCC------CCc-eeec-
Confidence 45667888999999999999998754 6555422 333444332 333555665321 100 0010
Q ss_pred cccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 306 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 306 s~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
..+... +....+|+|-+.+| +||+||.+|-|||||
T Consensus 570 ---~~k~Y~---~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd 604 (794)
T PF08553_consen 570 ---QSKQYS---SKNNFSCFATTEDG-YIAVGSNKGDIRLYD 604 (794)
T ss_pred ---cccccc---cCCCceEEEecCCc-eEEEEeCCCcEEeec
Confidence 111111 22358888888887 899999999999998
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=78.90 E-value=1.2e+02 Score=34.22 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=40.6
Q ss_pred CCeEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEECCeEEEEECCCCceeEEEe
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVL 116 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~d~qI~IWDa~T~e~l~tL~ 116 (882)
.+.+.+||+.+++..........+....++| +.||-+.++.|+++++.+++ ...|.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~-~~~lT 79 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ-ETQLT 79 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE-EEESE
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCC-eEEec
Confidence 4678899999987655433445677888876 78888899999999988873 33443
No 344
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.78 E-value=10 Score=47.38 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=72.1
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCC-eEEEEECCCCCEEEEEEcCCC----EEEEEecCCCcccCCCCCCccccCCcc
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSP-ISALCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~sp-IsaLaFSPdGtlLATAS~dGt----~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
|..+|.|.+.+- +.+.+.-|++|... |..|-...+-.+|++-+.|+. .++||++.... + +.+.
T Consensus 41 gt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-----~------n~sP 108 (933)
T KOG2114|consen 41 GTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-----K------NNSP 108 (933)
T ss_pred eeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-----C------CCCc
Confidence 567888877764 24556889999888 555554555579999988877 79999997521 1 0112
Q ss_pred cEEEEEE-----ecccCCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 308 VHLYKLH-----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 308 ~~l~~L~-----RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
..+++.+ -+....++.+|+.|-|-+.+|+|=.+|+|..+.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence 3443332 222245789999999999999999999998874
No 345
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.70 E-value=21 Score=44.63 Aligned_cols=89 Identities=18% Similarity=0.412 Sum_probs=54.4
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcc-cCC--C-CCCccccCCcccEEE-EEEecccCCcEEEEEEccCC-
Q 002778 258 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-RSG--S-GNHKYDWNSSHVHLY-KLHRGITSATIQDICFSHYS- 331 (882)
Q Consensus 258 spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~-~~~--s-G~~~~d~sss~~~l~-~L~RG~t~a~I~sLaFSPDg- 331 (882)
-.|..|.+||+|++||-++..| |.|-.+ |..- .++ . |.. ...+....+- .+.+......|..+.|.|.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~--v~V~~L-P~r~g~~~~~~~g~~--~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG--VVVLEL-PRRWGKNGEFEDGKK--EINCRTVPVDERFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc--EEEEEe-ccccCccccccCCCc--ceeEEEEEechhhccCCCCceEEEEEEcCCCC
Confidence 3588899999999999999865 556666 3110 010 0 100 0000000000 11122233579999999874
Q ss_pred --CEEEEEeCCCeEEEEECCCC
Q 002778 332 --QWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 332 --~~LAsgS~DGTVhIWdI~~~ 351 (882)
..|++=++|+++|+||+...
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCC
Confidence 89999999999999999643
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=78.33 E-value=1.4e+02 Score=34.77 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=39.1
Q ss_pred cCCeEEEEECCCCeEEEEEEcC-CcEEEEEEcC--CEEEEEECCeEEEEECCC
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLATQIYCFDALT 108 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~-s~V~sV~~S~--rlLAV~~d~qI~IWDa~T 108 (882)
.|..|+||+. +|+.+.++.++ +.|..+.|+. ++|+|..++.+++||+..
T Consensus 59 ~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 59 KPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred CCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 4557999997 78889988854 6788999976 566667788999999873
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=77.09 E-value=1.4e+02 Score=35.41 Aligned_cols=58 Identities=16% Similarity=0.270 Sum_probs=37.1
Q ss_pred CCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 269 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 269 GtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
|.+|+..+. + .|.+||+.. + ..+.++ .-..|..|.||+|+.++|..+.+ ++.|++.
T Consensus 117 G~LL~~~~~-~-~i~~yDw~~-------~----------~~i~~i----~v~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKSS-D-FICFYDWET-------G----------KLIRRI----DVSAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEET-T-EEEEE-TTT-------------------EEEEE----SS-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECC-C-CEEEEEhhH-------c----------ceeeEE----ecCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 999988876 3 589999964 2 344443 22348999999999999999866 6778775
Q ss_pred CC
Q 002778 349 SP 350 (882)
Q Consensus 349 ~~ 350 (882)
+.
T Consensus 173 ~~ 174 (443)
T PF04053_consen 173 NL 174 (443)
T ss_dssp -H
T ss_pred cc
Confidence 43
No 348
>PRK13616 lipoprotein LpqB; Provisional
Probab=77.07 E-value=13 Score=45.34 Aligned_cols=92 Identities=11% Similarity=0.145 Sum_probs=53.1
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE--E
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL--H 314 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L--~ 314 (882)
..+.+++.. +.....+.+. .++.-.|+|||+.|++.+.....+++.+-.. .+ .++.+ .
T Consensus 379 s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~------~g-----------ql~~~~vd 438 (591)
T PRK13616 379 SSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA------TG-----------QLARTPVD 438 (591)
T ss_pred eEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC------Cc-----------eEEEEecc
Confidence 355555642 2222222332 3777899999999999886435444544311 01 22211 1
Q ss_pred ec----ccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 315 RG----ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 315 RG----~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
-| .-...|.++.|||||++||... +|.|+|=-|.
T Consensus 439 ~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 439 ASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred CchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence 11 0123599999999999999877 5766664443
No 349
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=76.31 E-value=37 Score=38.93 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=64.8
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc--CCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV--YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~--dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
+..|.+.|..+.+.+..+.--. .-..++|+|+|..+-.+.. ....+.+.|..+ + ..+.+.
T Consensus 95 ~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-------~----------~~~~~~ 156 (381)
T COG3391 95 SNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-------N----------KVTATI 156 (381)
T ss_pred CCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-------C----------eEEEEE
Confidence 5789999988777666554333 3357999999987776665 235567777643 1 244445
Q ss_pred EecccCCcEEEEEEccCCCEEEEEe-CCCeEEEEECCC
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSP 350 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS-~DGTVhIWdI~~ 350 (882)
..|..+ ..++|+|+|+.+.+.. .++++.++|.+.
T Consensus 157 ~vG~~P---~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 157 PVGNTP---TGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred ecCCCc---ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 556433 8899999999666554 789999999543
No 350
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.23 E-value=31 Score=41.48 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=41.9
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
|+.+|.|++||-...+....|++--.+|..+..+.||.+|+... .+.+-|-++.
T Consensus 447 gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 447 GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 57899999999855556677888999999999999999775433 2356677763
No 351
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=73.39 E-value=36 Score=42.01 Aligned_cols=101 Identities=14% Similarity=0.227 Sum_probs=66.1
Q ss_pred CceEEEEECCCCcEE--EEeccCCCCeEEEEE--CCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEE
Q 002778 236 AGIVVVKDFVTRAII--SQFKAHTSPISALCF--DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 311 (882)
Q Consensus 236 dG~V~VWDl~s~~~v--~~f~aH~spIsaLaF--SPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~ 311 (882)
.-.+.|||...+... ..| ...++|..|.| .|+|+.+.+-+- ++.|.|+--......+ .+..| ..+.
T Consensus 50 ~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf-~~~v~l~~Q~R~dy~~----~~p~w----~~i~ 119 (631)
T PF12234_consen 50 RSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGF-PHHVLLYTQLRYDYTN----KGPSW----APIR 119 (631)
T ss_pred CCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEc-CcEEEEEEccchhhhc----CCccc----ceeE
Confidence 357999999887643 233 45678998887 578998888888 5568888653210001 01112 2333
Q ss_pred EE-EecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 312 KL-HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 312 ~L-~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
++ -+.+|+.+|.+..|-+||..+++++ +-++||+=
T Consensus 120 ~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 120 KIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 33 2567777899999999997776664 34888864
No 352
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=72.85 E-value=7.5 Score=41.99 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=62.2
Q ss_pred cCCCceEEEEECCCCcEE-EEeccCCCCeEE-EEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE
Q 002778 233 MDNAGIVVVKDFVTRAII-SQFKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v-~~f~aH~spIsa-LaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l 310 (882)
|..+|.|.+|...-.... -.+..-..+|.+ +.--.++.+..++..+| .||-|.+.|. +++
T Consensus 76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg-~ir~~n~~p~-----------------k~~ 137 (238)
T KOG2444|consen 76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDG-RIRACNIKPN-----------------KVL 137 (238)
T ss_pred ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCC-ceeeeccccC-----------------cee
Confidence 467899999987621111 111111223332 33334556777888766 4999999873 232
Q ss_pred EEEEecccC-CcEEEEEEccCCCEEEEE--eCCCeEEEEECCCCCC
Q 002778 311 YKLHRGITS-ATIQDICFSHYSQWIAIV--SSKGTCHVFVLSPFGG 353 (882)
Q Consensus 311 ~~L~RG~t~-a~I~sLaFSPDg~~LAsg--S~DGTVhIWdI~~~gg 353 (882)
-. +|.++ ..+..+.-+..+++|+.+ |.|.+++.|++.....
T Consensus 138 g~--~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 138 GY--VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred ee--eccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 22 34444 566777777778888888 8888888888876543
No 353
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=72.85 E-value=2.1e+02 Score=34.03 Aligned_cols=59 Identities=8% Similarity=-0.003 Sum_probs=41.8
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCc------E-EEEEEcCCEEEEEE----------CCeEEEEECCCCceeEEEec
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSS------V-CMVRCSPRIVAVGL----------ATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~------V-~sV~~S~rlLAV~~----------d~qI~IWDa~T~e~l~tL~t 117 (882)
.++.|.-+|.+||+.+...+.... + .+..+...+|+++. ++.++.+|+.|++.+++...
T Consensus 118 ~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 118 FDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 357888899999999988775443 1 12233345565543 35799999999999988865
No 354
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=72.40 E-value=50 Score=39.08 Aligned_cols=106 Identities=15% Similarity=0.253 Sum_probs=54.5
Q ss_pred CCCceEEEEECCCCcEEEEeccCCC--CeEEEEE--CCCCCEEEEEEcC-CCEEEEEecCCCcccCCCCCCccccCCccc
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTS--PISALCF--DPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHV 308 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~s--pIsaLaF--SPdGtlLATAS~d-Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~ 308 (882)
..-..+.+||+.+.+.+++|.--.. -...|.| +|+-++=.++..- .++.++|.... | .|...
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~-------g----~W~a~-- 285 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD-------G----EWAAE-- 285 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET-------T----EEEEE--
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC-------C----Ceeee--
Confidence 3456899999999999998874332 2345666 5555554444332 23333333221 1 24322
Q ss_pred EEEEEE-------------e--cccCCcEEEEEEccCCCEEEEEe-CCCeEEEEECCCCC
Q 002778 309 HLYKLH-------------R--GITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 352 (882)
Q Consensus 309 ~l~~L~-------------R--G~t~a~I~sLaFSPDg~~LAsgS-~DGTVhIWdI~~~g 352 (882)
.+.++. + |..+.-|++|..|.|++||-.+. .+|.|+.|||+...
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 122211 0 11135689999999999998887 58999999998754
No 355
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=72.03 E-value=8.3 Score=31.31 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=25.3
Q ss_pred EEEEEEccCCC---EEEEEeCCCeEEEEECCC
Q 002778 322 IQDICFSHYSQ---WIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 322 I~sLaFSPDg~---~LAsgS~DGTVhIWdI~~ 350 (882)
|.++.|||++- +||.+-..|-|||+|+..
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 78999998654 899999999999999984
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=71.85 E-value=52 Score=37.75 Aligned_cols=94 Identities=12% Similarity=0.197 Sum_probs=64.4
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE--
Q 002778 235 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK-- 312 (882)
Q Consensus 235 ~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~-- 312 (882)
.+++|.+.|..+++.+..+..-..| ..++|+|+|+.+..+......|-++|.... .+.+
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~------------------~v~~~~ 198 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN------------------SVVRGS 198 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc------------------ceeccc
Confidence 4789999999999888777655567 889999999977666655566889996421 1111
Q ss_pred ----EEecccCCcEEEEEEccCCCEEEEEeCC---CeEEEEECCC
Q 002778 313 ----LHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSP 350 (882)
Q Consensus 313 ----L~RG~t~a~I~sLaFSPDg~~LAsgS~D---GTVhIWdI~~ 350 (882)
...+. .-..++++|||+++-+.-.. +++-+.|...
T Consensus 199 ~~~~~~~~~---~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 199 VGSLVGVGT---GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred cccccccCC---CCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 11111 23678999999976655433 4777766654
No 357
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=70.13 E-value=20 Score=40.85 Aligned_cols=114 Identities=11% Similarity=0.167 Sum_probs=71.9
Q ss_pred CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCC---------Ccccc------------
Q 002778 245 VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN---------HKYDW------------ 303 (882)
Q Consensus 245 ~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~---------~~~d~------------ 303 (882)
+....++...+|..+|.++-|+-.-+++++++.|.. + .|-.... +++.|. ...|.
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~-~-~~hc~e~--~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqv 177 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ-F-AWHCTES--GNRLGGYNFETPASALQFDALYAFVGDHSGQI 177 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccc-e-EEEeecc--CCcccceEeeccCCCCceeeEEEEecccccce
Confidence 334455666789999999999988888888887432 3 5554211 111110 00000
Q ss_pred -----C-CcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCcc-ccccccCCC
Q 002778 304 -----N-SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQG 364 (882)
Q Consensus 304 -----s-ss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~-~l~~H~~~~ 364 (882)
. .....++++ .|++ ..|.+++|-+-.+.|.++..|..+.+|||--..+.. .+++|+..+
T Consensus 178 t~lr~~~~~~~~i~~~-~~h~-~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV 243 (404)
T KOG1409|consen 178 TMLKLEQNGCQLITTF-NGHT-GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV 243 (404)
T ss_pred EEEEEeecCCceEEEE-cCcc-cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence 0 011223333 4555 469999999999999999999999999997655543 457776543
No 358
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.63 E-value=17 Score=42.14 Aligned_cols=56 Identities=14% Similarity=0.283 Sum_probs=47.6
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
++.+.+|+|.|+.+..++.++.+| .++++.+|+-|.....-|+.....|-|||+..
T Consensus 212 asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 212 ASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred eccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 467889999999999999999999 89999999999887776665555689999963
No 359
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=69.59 E-value=9.7 Score=28.89 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=20.5
Q ss_pred CcEEEEEEccCCCEEEEEeCC---CeEEEE
Q 002778 320 ATIQDICFSHYSQWIAIVSSK---GTCHVF 346 (882)
Q Consensus 320 a~I~sLaFSPDg~~LAsgS~D---GTVhIW 346 (882)
......+|||||++|+-++.. |...||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 356778999999999988765 677776
No 360
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=69.05 E-value=23 Score=40.38 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=45.7
Q ss_pred CeEEEEECCCCCEEEEE-EcCC---CEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEE
Q 002778 259 PISALCFDPSGTLLVTA-SVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 334 (882)
Q Consensus 259 pIsaLaFSPdGtlLATA-S~dG---t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~L 334 (882)
.+...++||||++||-+ +..| ..|+|+|+.. | ..+... .....-..++|++|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-------g----------~~l~d~---i~~~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-------G----------KFLPDG---IENPKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-------T----------EEEEEE---EEEEESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-------C----------cCcCCc---ccccccceEEEeCCCCEE
Confidence 44578999999998855 4434 3589999964 3 232221 111222349999999988
Q ss_pred EEEeCCC-----------eEEEEECCCC
Q 002778 335 AIVSSKG-----------TCHVFVLSPF 351 (882)
Q Consensus 335 AsgS~DG-----------TVhIWdI~~~ 351 (882)
.....+. .|..|.+.+.
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTP 212 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCC
Confidence 7776544 2666666543
No 361
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=68.19 E-value=15 Score=27.81 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=21.5
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEE
Q 002778 253 FKAHTSPISALCFDPSGTLLVTASVYG--NNINIF 285 (882)
Q Consensus 253 f~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVW 285 (882)
+.........-+|||||+.|+-++... ....||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334455677889999999998777654 334555
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=67.61 E-value=35 Score=41.82 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=58.1
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEE---EE
Q 002778 236 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL---YK 312 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l---~~ 312 (882)
.+.+.+.++..+.... .....|..++|||||+.||-... |+ |.|=-+... ..|. ..+ ..
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~-g~-v~Va~Vvr~----~~G~---------~~l~~~~~ 490 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG-GK-VYLAVVEQT----EDGQ---------YALTNPRE 490 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC-CE-EEEEEEEeC----CCCc---------eeecccEE
Confidence 3455555665554322 33567999999999998887663 53 556333321 0121 122 22
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCc
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 354 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~ 354 (882)
+.-+.. ..+.+++|..|+..+ ++..++...+|.++-.|..
T Consensus 491 l~~~l~-~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 491 VGPGLG-DTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred eecccC-CccccceEecCCEEE-EEecCCCCceEEEecCCcc
Confidence 222222 235889999999955 5566666778887765543
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=67.57 E-value=39 Score=38.03 Aligned_cols=74 Identities=19% Similarity=0.327 Sum_probs=46.4
Q ss_pred CeEEEEECCCCCEEEEEEc---CC-----CEEEEEecCCCcccCCCCCCccccCCcccEEEEEEec-ccCCcEEEEEEcc
Q 002778 259 PISALCFDPSGTLLVTASV---YG-----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-ITSATIQDICFSH 329 (882)
Q Consensus 259 pIsaLaFSPdGtlLATAS~---dG-----t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG-~t~a~I~sLaFSP 329 (882)
..+.+..+|+|.+-++... .+ ..-.||.+.|. | ++.++..+ .. .-+.|||||
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~------g-----------~~~~l~~~~~~--~~NGla~Sp 172 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD------G-----------GVVRLLDDDLT--IPNGLAFSP 172 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC------C-----------CEEEeecCcEE--ecCceEECC
Confidence 3467888999998887554 01 11257777542 2 22333222 22 236799999
Q ss_pred CCCEEEEE-eCCCeEEEEECCCC
Q 002778 330 YSQWIAIV-SSKGTCHVFVLSPF 351 (882)
Q Consensus 330 Dg~~LAsg-S~DGTVhIWdI~~~ 351 (882)
|++.|-.+ +..+.+|-|++...
T Consensus 173 Dg~tly~aDT~~~~i~r~~~d~~ 195 (307)
T COG3386 173 DGKTLYVADTPANRIHRYDLDPA 195 (307)
T ss_pred CCCEEEEEeCCCCeEEEEecCcc
Confidence 99877666 45588999998763
No 364
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.46 E-value=19 Score=46.16 Aligned_cols=32 Identities=19% Similarity=0.567 Sum_probs=27.8
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 257 TSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 257 ~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
..||++++|+.||++|+.|=.+|. |.+||+..
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~ 161 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHR 161 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCc-EEEEEccC
Confidence 579999999999999988877675 89999964
No 365
>PF12429 DUF3676: Protein of unknown function (DUF3676) ; InterPro: IPR022144 This domain family is found in eukaryotes, and is approximately 230 amino acids in length.
Probab=67.17 E-value=6.5 Score=41.02 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=27.9
Q ss_pred ccceeeeeeccCCCCCCcccccccccccCcccccccc
Q 002778 839 LCKSTDVVNDDINGGNSHCESKKLEEDAEDDEMLGGM 875 (882)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (882)
..+|||| +|+=-++-|. +.++|||+|+-+|+-||-
T Consensus 104 s~e~Te~-~DvE~sses~-d~e~PeEeg~and~Sg~s 138 (230)
T PF12429_consen 104 SEELTEV-TDVEGSSESN-DTEQPEEEGEANDRSGGS 138 (230)
T ss_pred chhcccc-cccccccccc-cccCcchhccccCCCCCc
Confidence 5688887 8874444444 899999999999999984
No 366
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=67.06 E-value=1.6e+02 Score=38.01 Aligned_cols=98 Identities=11% Similarity=0.144 Sum_probs=68.3
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
+....|+||+..+++.++.=..|..++.+|...-.|..+|.|+.-+. |.+-..+.. .| .+.++
T Consensus 845 ~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~-----eg-----------~f~ev 907 (1096)
T KOG1897|consen 845 GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGD-----EG-----------NFEEV 907 (1096)
T ss_pred ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEecc-----CC-----------ceEEe
Confidence 34567999999988777666678899999999999999999987543 555444321 02 46666
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
.|-..+.++..+.+=.|..+| .+..+|.+.+-..+
T Consensus 908 ArD~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKD 942 (1096)
T ss_pred ehhhCccceeeEEEecCceEE-eecccccEEEEEec
Confidence 676666678888886665555 45566766665444
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=66.81 E-value=2.3e+02 Score=32.05 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=35.3
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
|.|..+|. .++.++.+..|-.--+.|||||||+.|-.+......|.-|++.
T Consensus 143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 44555554 4666666666655557899999998888888766656666664
No 368
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=66.78 E-value=94 Score=36.91 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=31.4
Q ss_pred cCCeEEEEECCCCeEEEEEEcC---CcEEEEEEcC------CEEEEEECCeEEEEE
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP------RIVAVGLATQIYCFD 105 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~---s~V~sV~~S~------rlLAV~~d~qI~IWD 105 (882)
..+++.|||+++++.+.++... ...+.|+|-. .++.+++..+|..|-
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~ 275 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFY 275 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEE
Confidence 4589999999999999999875 3578888853 255566666776654
No 369
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=66.14 E-value=89 Score=36.45 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=48.6
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccC---CCCC---------------CccccC--------CcccEEEE
Q 002778 259 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS---GSGN---------------HKYDWN--------SSHVHLYK 312 (882)
Q Consensus 259 pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~---~sG~---------------~~~d~s--------ss~~~l~~ 312 (882)
.|.++.|.++-.-||.+-..|. +-||+.......+ .... ...|.. .....++-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~Ge-Vv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGE-VVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS--EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCc-EEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 4788999998777777777787 5588764321100 0000 000100 01122222
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
+. .....|..++.| |=-++|+|..+|++-|.|+.
T Consensus 82 ~~--~~~g~vtal~~S-~iGFvaigy~~G~l~viD~R 115 (395)
T PF08596_consen 82 LD--AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLR 115 (395)
T ss_dssp E-----S-SEEEEEE--BTSEEEEEETTSEEEEEETT
T ss_pred ee--ccCCcEeEEecC-CCcEEEEEecCCcEEEEECC
Confidence 22 124579999998 55699999999999999994
No 370
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=66.03 E-value=12 Score=46.75 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=46.8
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
+-.-|.+.||...+.+.-.....|..+|.-|.|||+|+.|.|+..-| .+.+|+..
T Consensus 77 gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g-~v~lwr~d 131 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPG-SVHLWRYD 131 (1416)
T ss_pred ccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCc-eeEEEEee
Confidence 45568999999988776566668999999999999999999999866 58999875
No 371
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=64.01 E-value=35 Score=38.36 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=40.4
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEE
Q 002778 257 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 336 (882)
Q Consensus 257 ~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAs 336 (882)
...+..+..++||+++|.++. |..+.-||- |. ..++.+. |. +..+|++|.|+||+...++
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~-G~~~~s~~~---------G~-------~~w~~~~--r~-~~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSR-GNFYSSWDP---------GQ-------TTWQPHN--RN-SSRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETT-SSEEEEE-T---------T--------SS-EEEE-----SSS-EEEEEE-TTS-EEEE
T ss_pred cceeEeEEECCCCcEEEEECc-ccEEEEecC---------CC-------ccceEEc--cC-ccceehhceecCCCCEEEE
Confidence 467888999999999988765 887666763 21 1134443 43 3458999999999877665
Q ss_pred EeCCCeEEEEE
Q 002778 337 VSSKGTCHVFV 347 (882)
Q Consensus 337 gS~DGTVhIWd 347 (882)
+ ..|-++.=+
T Consensus 204 ~-~Gg~~~~s~ 213 (302)
T PF14870_consen 204 A-RGGQIQFSD 213 (302)
T ss_dssp E-TTTEEEEEE
T ss_pred e-CCcEEEEcc
Confidence 5 667666544
No 372
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=63.82 E-value=40 Score=39.61 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=31.1
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
....|......+.+|+.+|+|++.|+++.-|+ |-|+|+..
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~ 338 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGR-VLLIDVAR 338 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCc-EEEEECCC
Confidence 33445555567889999999999999877676 78999964
No 373
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=63.35 E-value=47 Score=38.67 Aligned_cols=83 Identities=19% Similarity=0.333 Sum_probs=53.5
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-e-----cccCCcE
Q 002778 249 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-R-----GITSATI 322 (882)
Q Consensus 249 ~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~-R-----G~t~a~I 322 (882)
....+.+..++|++|+.|.=| ++|.|..+|+ +-|.|++ |. ..+|.-. + ......|
T Consensus 78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~R--------GP---------avI~~~~i~~~~~~~~~~~~v 138 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLR--------GP---------AVIYNENIRESFLSKSSSSYV 138 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETT--------TT---------EEEEEEEGGG--T-SS----E
T ss_pred chhheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECC--------CC---------eEEeeccccccccccccccCe
Confidence 445556668999999998766 8888998775 7899995 21 2344321 1 1123468
Q ss_pred EEEEEc-----cCC---CEEEEEeCCCeEEEEECCC
Q 002778 323 QDICFS-----HYS---QWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 323 ~sLaFS-----PDg---~~LAsgS~DGTVhIWdI~~ 350 (882)
++|.|+ .|+ -.|.+|++.|++.+|.|-+
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 889888 233 5788999999999999975
No 374
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=63.00 E-value=3.1e+02 Score=32.23 Aligned_cols=40 Identities=10% Similarity=0.049 Sum_probs=26.5
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcC---CEEEEEEC
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLA 98 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~---rlLAV~~d 98 (882)
.+..|.--|++||+.-..+.-...+--+.++| .+|+-|-.
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHE 208 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHE 208 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEecc
Confidence 45677778999999777777777888888987 56776653
No 375
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=62.54 E-value=2.3e+02 Score=35.75 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=49.9
Q ss_pred CCeEEEEEC--CCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCC----
Q 002778 258 SPISALCFD--PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS---- 331 (882)
Q Consensus 258 spIsaLaFS--PdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg---- 331 (882)
..++.|++. ...++||.++. .+.|.||-...... ...+..... ...-|-+|+|-++.
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsN-s~~VTVFaf~l~~~-------------r~~~~~s~~---~~hNIP~VSFl~~~~d~~ 226 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSN-SQEVTVFAFALVDE-------------RFYHVPSHQ---HSHNIPNVSFLDDDLDPN 226 (717)
T ss_pred CceeEEEEEecCcceEEEEecC-CceEEEEEEecccc-------------ccccccccc---cccCCCeeEeecCCCCCc
Confidence 378899998 77778877665 66788887643100 000111111 12358999998765
Q ss_pred --CEEEEEeCCCeEEEEECC
Q 002778 332 --QWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 332 --~~LAsgS~DGTVhIWdI~ 349 (882)
.+|++++-.|.+-+|++.
T Consensus 227 G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 227 GHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cceEEEEEeccCcEEEEEEE
Confidence 289999999999999883
No 376
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=62.14 E-value=77 Score=41.01 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=51.8
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEE
Q 002778 257 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 336 (882)
Q Consensus 257 ~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAs 336 (882)
...|.++.|-++...|+.+..+|. |-++...+.. + ....+.- |.-...|.+++||||...||.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gd-i~~~~~~~~~-----~----------~~~~E~V-G~vd~GI~a~~WSPD~Ella~ 137 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGD-IILVREDPDP-----D----------EDEIEIV-GSVDSGILAASWSPDEELLAL 137 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCce-EEEEEccCCC-----C----------CceeEEE-EEEcCcEEEEEECCCcCEEEE
Confidence 467999999999988888888776 5555221110 1 0111211 333456999999999999999
Q ss_pred EeCCCeEEEEE
Q 002778 337 VSSKGTCHVFV 347 (882)
Q Consensus 337 gS~DGTVhIWd 347 (882)
.+.++++.+-.
T Consensus 138 vT~~~~l~~mt 148 (928)
T PF04762_consen 138 VTGEGNLLLMT 148 (928)
T ss_pred EeCCCEEEEEe
Confidence 99999998864
No 377
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=62.05 E-value=9.4 Score=46.86 Aligned_cols=95 Identities=14% Similarity=0.249 Sum_probs=67.1
Q ss_pred ccCCCceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccE
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 309 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~--aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~ 309 (882)
+.+.+|.|.||=+-.+.-...+. ...+-|.+++|+.||+.++.+-.||.+ .|=.+. | .+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav-IVGsvd--------G----------NR 148 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV-IVGSVD--------G----------NR 148 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE-EEEeec--------c----------ce
Confidence 45789999999987765332221 245678999999999999999888874 454442 2 12
Q ss_pred EE--EEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 310 LY--KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 310 l~--~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
++ +| .|.. ...+.||+|.+.+..+-..|.+||||-+
T Consensus 149 IwgKeL-kg~~---l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 149 IWGKEL-KGQL---LAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred ecchhc-chhe---ccceeecccHHHHHhhhcCCcEEEeccc
Confidence 21 12 2322 3467899999999888899999999865
No 378
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=60.93 E-value=19 Score=29.25 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.8
Q ss_pred CCeEEEEECCCC---CEEEEEEcCCCEEEEEecC
Q 002778 258 SPISALCFDPSG---TLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 258 spIsaLaFSPdG---tlLATAS~dGt~IrVWdi~ 288 (882)
+.|.++.|+|+. .+||-+-..|. |.|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcc
Confidence 368899999854 48888776665 8999996
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=56.33 E-value=2e+02 Score=28.01 Aligned_cols=85 Identities=12% Similarity=0.189 Sum_probs=55.1
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEE
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~ 312 (882)
|+.|..|+||+-. ..+..+.-+ +.|.+|+-... ..+|.|-..|+ |-||+-. .++++
T Consensus 21 Gs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~~-------------------~RlWR 76 (111)
T PF14783_consen 21 GSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGT-VGVYDRS-------------------QRLWR 76 (111)
T ss_pred ecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCE-EEEEeCc-------------------ceeee
Confidence 5789999999865 567777654 56666766655 56888888786 8999863 25555
Q ss_pred EEecccCCcEEEEEEccC---C-CEEEEEeCCCeEE
Q 002778 313 LHRGITSATIQDICFSHY---S-QWIAIVSSKGTCH 344 (882)
Q Consensus 313 L~RG~t~a~I~sLaFSPD---g-~~LAsgS~DGTVh 344 (882)
... ...+.++++..- | .-|++|=++|.|-
T Consensus 77 iKS---K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS---KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc---CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 432 234666665433 3 2466776677654
No 380
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=54.87 E-value=7.7 Score=45.38 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=48.0
Q ss_pred ccCCCceEEEEECCC--C-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCC
Q 002778 232 DMDNAGIVVVKDFVT--R-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 232 tgs~dG~V~VWDl~s--~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p 289 (882)
+++.||.++.|--.- + +.+..|++|-..|.+|+.+-+|.+++|.+.-++.+++||+..
T Consensus 25 qASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 25 QASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred eeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 457789999998643 2 457889999999999999999999999776467799999964
No 381
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=53.85 E-value=31 Score=37.71 Aligned_cols=89 Identities=22% Similarity=0.192 Sum_probs=52.1
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEecCCCcccCCCCCCccccCCcccEEEEEEec
Q 002778 239 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 316 (882)
Q Consensus 239 V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dG--t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG 316 (882)
-.+||+.+++....-.....-+++=+|-|||++|.+++..+ +.||+|+-... ....+|......+.. .|-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~-------~~~~~w~e~~~~m~~-~RW 119 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTS-------DGTCDWTESPNDMQS-GRW 119 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCC-------CCCCCceECcccccC-CCc
Confidence 35899998875433233444566678999999999987633 45888885320 012344332222221 121
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCC
Q 002778 317 ITSATIQDICFSHYSQWIAIVSSK 340 (882)
Q Consensus 317 ~t~a~I~sLaFSPDg~~LAsgS~D 340 (882)
.. .+.-| |||+.|++|+.+
T Consensus 120 Yp--T~~~L---~DG~vlIvGG~~ 138 (243)
T PF07250_consen 120 YP--TATTL---PDGRVLIVGGSN 138 (243)
T ss_pred cc--cceEC---CCCCEEEEeCcC
Confidence 11 22333 899999999877
No 382
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=52.92 E-value=4.9e+02 Score=31.49 Aligned_cols=60 Identities=10% Similarity=-0.033 Sum_probs=39.3
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCc--EEEEE----EcCCEEEEEE-------CCeEEEEECCCCceeEEEecC
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSS--VCMVR----CSPRIVAVGL-------ATQIYCFDALTLENKFSVLTY 118 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~--V~sV~----~S~rlLAV~~-------d~qI~IWDa~T~e~l~tL~t~ 118 (882)
.++.|.-.|.+||+.+........ -+.+. +...+|+++. ++.|+.+|+.|++.+.+..+-
T Consensus 128 ~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 128 LDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred CCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 356777789999999877653211 11111 2234555543 467999999999999887653
No 383
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=52.75 E-value=22 Score=44.94 Aligned_cols=45 Identities=22% Similarity=0.193 Sum_probs=39.4
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEECCCCCCccccccccCCC
Q 002778 320 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 364 (882)
Q Consensus 320 a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~~gg~~~l~~H~~~~ 364 (882)
+..++++||-+.++|++|+..|.||+|++..+..+.....|++.+
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sav 1146 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAV 1146 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccccc
Confidence 578999999999999999999999999999887777778887543
No 384
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=49.92 E-value=1.8e+02 Score=31.79 Aligned_cols=82 Identities=12% Similarity=0.195 Sum_probs=47.5
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEE-ecccCCcEEEEEEccC
Q 002778 252 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHY 330 (882)
Q Consensus 252 ~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~-RG~t~a~I~sLaFSPD 330 (882)
.+.+-...++.|+|+|+...|++-..+...|...+.. | ..+.++. .|. ...-.|++.-+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--------G----------~vlr~i~l~g~--~D~EgI~y~g~ 75 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--------G----------KVLRRIPLDGF--GDYEGITYLGN 75 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--------------------EEEEEE-SS---SSEEEEEE-ST
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--------C----------CEEEEEeCCCC--CCceeEEEECC
Confidence 3444455699999999866666655545544444431 3 2344432 232 35788999988
Q ss_pred CCEEEEEeCCCeEEEEECCCCCC
Q 002778 331 SQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 331 g~~LAsgS~DGTVhIWdI~~~gg 353 (882)
++++++.-.++++.++++...+.
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----T
T ss_pred CEEEEEEcCCCcEEEEEEecccc
Confidence 88877776799999999965543
No 385
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=47.87 E-value=1.1e+02 Score=35.54 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=28.1
Q ss_pred cEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~ 349 (882)
..+.++..-. ..|.++.|+.+.+ |++...||++++||+.
T Consensus 71 ~ll~~i~w~~--~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 71 KLLSSIPWDS--GRIVGMGWTDDEE-LVVVQSDGTVRVYDLF 109 (410)
T ss_pred CEeEEEEECC--CCEEEEEECCCCe-EEEEEcCCEEEEEeCC
Confidence 3555554322 5799999998654 5566689999999984
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=47.26 E-value=90 Score=34.65 Aligned_cols=58 Identities=7% Similarity=0.056 Sum_probs=44.7
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEEEEEEcCCEEEEEE-CCeEEEEECCCCceeEEEe
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVL 116 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S~rlLAV~~-d~qI~IWDa~T~e~l~tL~ 116 (882)
-.++.-+||.++-+.+.++.+++.=+.++.+.+.|..+. ..+|+++|..+++...++.
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred cCCeEEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEE
Confidence 347889999999999999999998899998887776664 5789999999999888875
No 387
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=46.88 E-value=2.1e+02 Score=30.97 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=46.0
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEe-cccCCcEEEEEEccCCCEEEEE
Q 002778 259 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-GITSATIQDICFSHYSQWIAIV 337 (882)
Q Consensus 259 pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R-G~t~a~I~sLaFSPDg~~LAsg 337 (882)
.+..-.|+++|.+.+....++ ..+++.-.. . |. .....+.. +.. ..|.+|.+||||..+|..
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~-~~~~~~~~~----~--g~---------~~~~~v~~~~~~-~~I~~l~vSpDG~RvA~v 129 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSG-GVRVVRDSA----S--GT---------GEPVEVDWPGLR-GRITALRVSPDGTRVAVV 129 (253)
T ss_pred ccccccccCCCCEEEEEcCCC-ceEEEEecC----C--Cc---------ceeEEecccccC-CceEEEEECCCCcEEEEE
Confidence 677789999998877666433 456664211 0 10 01111111 111 179999999999999988
Q ss_pred eC---CCeEEEEECCC
Q 002778 338 SS---KGTCHVFVLSP 350 (882)
Q Consensus 338 S~---DGTVhIWdI~~ 350 (882)
.. ++.|.|=-|..
T Consensus 130 ~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 130 VEDGGGGRVYVAGVVR 145 (253)
T ss_pred EecCCCCeEEEEEEEe
Confidence 73 46677766654
No 388
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=45.76 E-value=1.6e+02 Score=29.90 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=24.4
Q ss_pred cEEEEEEccCC------CEEEEEeCCCeEEEEECC
Q 002778 321 TIQDICFSHYS------QWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 321 ~I~sLaFSPDg------~~LAsgS~DGTVhIWdI~ 349 (882)
.|..++|||-| -.||+-+.+|.+.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999954 478999999999999754
No 389
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=45.04 E-value=15 Score=46.29 Aligned_cols=54 Identities=19% Similarity=0.397 Sum_probs=37.8
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEE-----------ECCCCCEEEEEEcCCCEEEEEecC
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALC-----------FDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLa-----------FSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
+..+|+|+|.....- ....|+.|...+..++ +||||+.+|+|..||. ++.|.+-
T Consensus 201 ~~~~~~i~lL~~~ra-~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiy 265 (1283)
T KOG1916|consen 201 GLKGGEIRLLNINRA-LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIY 265 (1283)
T ss_pred ccCCCceeEeeechH-HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeee
Confidence 456778877665432 2256677866544433 6999999999999886 7888874
No 390
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.04 E-value=2.2e+02 Score=32.30 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=33.1
Q ss_pred CceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 002778 236 AGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASV 277 (882)
Q Consensus 236 dG~V~VWDl~s~-~~v~~f~aH~spIsaLaFSPdGtlLATAS~ 277 (882)
-|+|-|||...+ +.+..|..|--.--.|.+.+||++||.|..
T Consensus 139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred CceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 588999999754 456778877665667889999999998763
No 391
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=43.19 E-value=48 Score=40.06 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=22.9
Q ss_pred EEEEEEecccCCcEEEEEEccCCCEEEEE
Q 002778 309 HLYKLHRGITSATIQDICFSHYSQWIAIV 337 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPDg~~LAsg 337 (882)
.+..|..+-..+.|+.++|+||++.|.+.
T Consensus 491 ~~~rf~~~P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 491 ELKRFLVGPNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred ceeeeccCCCCcccccceECCCCCEEEEE
Confidence 45566667677899999999999988653
No 392
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=42.68 E-value=8.2e+02 Score=31.08 Aligned_cols=70 Identities=11% Similarity=0.012 Sum_probs=42.8
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccC--CCEEEEEe
Q 002778 261 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY--SQWIAIVS 338 (882)
Q Consensus 261 saLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPD--g~~LAsgS 338 (882)
..+.|.++-+.|+.++. ..+.++|+.+. .....+....+...|.++.=+|+ +..++..+
T Consensus 207 ~rI~W~~~~~~lLv~~r--~~l~~~d~~~~-----------------~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs 267 (765)
T PF10214_consen 207 KRILWVSDSNRLLVCNR--SKLMLIDFESN-----------------WQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS 267 (765)
T ss_pred eeeEecCCCCEEEEEcC--CceEEEECCCC-----------------CccchhccCCChhheeeEEecCCccceEEEEec
Confidence 47889888777777775 34889999642 01010222234457999998888 44444433
Q ss_pred CCCeEEEEECCCC
Q 002778 339 SKGTCHVFVLSPF 351 (882)
Q Consensus 339 ~DGTVhIWdI~~~ 351 (882)
..|..+++.+.
T Consensus 268 --~eiiw~~~~~~ 278 (765)
T PF10214_consen 268 --KEIIWLDVKSS 278 (765)
T ss_pred --CeEEEEEccCC
Confidence 35666677663
No 393
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=41.63 E-value=2.3e+02 Score=35.30 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=51.7
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEc--c
Q 002778 252 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS--H 329 (882)
Q Consensus 252 ~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFS--P 329 (882)
+|..-.....-+.-|.-+ .+|....+++.+.|||+.. + ...|+-.- .....|.+|.|. |
T Consensus 24 ~~~T~i~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~-------~----------~lE~~~~f-~~~~~I~dLDWtst~ 84 (631)
T PF12234_consen 24 TFETGISNPSLISGSSIK-KIAVVDSSRSELTIWDTRS-------G----------VLEYEESF-SEDDPIRDLDWTSTP 84 (631)
T ss_pred EEecCCCCcceEeecccC-cEEEEECCCCEEEEEEcCC-------c----------EEEEeeee-cCCCceeeceeeecC
Confidence 333333445555555544 4555577789999999963 2 23332211 123479999875 8
Q ss_pred CCCEEEEEeCCCeEEEEECC
Q 002778 330 YSQWIAIVSSKGTCHVFVLS 349 (882)
Q Consensus 330 Dg~~LAsgS~DGTVhIWdI~ 349 (882)
||+.+.+.+....|.||.--
T Consensus 85 d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 85 DGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred CCCEEEEEEcCcEEEEEEcc
Confidence 99999999999999998654
No 394
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=41.49 E-value=1.1e+02 Score=40.05 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=49.5
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEE
Q 002778 258 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 337 (882)
Q Consensus 258 spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsg 337 (882)
..|.++.|--++.-++-+...|..| +-|..+ ...++ -|.....|.+++||||.+++|..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~ii-lvd~et-------------------~~~ei-vg~vd~GI~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDII-LVDPET-------------------LELEI-VGNVDNGISAASWSPDEELLALI 127 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEE-EEcccc-------------------cceee-eeeccCceEEEeecCCCcEEEEE
Confidence 5788889988888888888878754 445432 11222 24444569999999999999999
Q ss_pred eCCCeEEE
Q 002778 338 SSKGTCHV 345 (882)
Q Consensus 338 S~DGTVhI 345 (882)
+.++|+-+
T Consensus 128 T~~~tll~ 135 (1265)
T KOG1920|consen 128 TGRQTLLF 135 (1265)
T ss_pred eCCcEEEE
Confidence 99998865
No 395
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=40.81 E-value=1.2e+02 Score=32.44 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=46.7
Q ss_pred ccccCCeEEEEECCCC-----eEEEEEEcCCcEEEEEEcCCEEEEEECCeEEEEECCCCce
Q 002778 56 CVNSPTAVRFYSFQSH-----CYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLEN 111 (882)
Q Consensus 56 ~~~sp~tVrlWDlkTG-----~~V~tLkf~s~V~sV~~S~rlLAV~~d~qI~IWDa~T~e~ 111 (882)
++...++|.+|....+ +.++.+..+..+.++.+.++.|+++..+...+.|+.++..
T Consensus 109 ~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~ 169 (275)
T PF00780_consen 109 CVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSP 169 (275)
T ss_pred EEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCc
Confidence 4456689999887653 5677788999999999999999999999999999997764
No 396
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=40.59 E-value=1.3e+02 Score=22.45 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=17.9
Q ss_pred CCCCEEEEEEcCCCEEEEEecCC
Q 002778 267 PSGTLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 267 PdGtlLATAS~dGt~IrVWdi~p 289 (882)
|+|+.|..+...+..|-++|...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~ 23 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT 23 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC
Confidence 67888877776677799999853
No 397
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=40.45 E-value=56 Score=38.71 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=16.0
Q ss_pred eEEEEECCCCeEEEEEEcCCcEEEEEEcC--CEEEEEECCeEEEEE
Q 002778 62 AVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFD 105 (882)
Q Consensus 62 tVrlWDlkTG~~V~tLkf~s~V~sV~~S~--rlLAV~~d~qI~IWD 105 (882)
.|.|||..+++.++.+.... |..|.+++ .+||...++.|+|++
T Consensus 127 ~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEE
Confidence 34555555555555444332 44444443 344444444444443
No 398
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=40.08 E-value=87 Score=35.97 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=40.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEecCC
Q 002778 238 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 238 ~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGt-lLATAS~dGt~IrVWdi~p 289 (882)
.|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|.+.+..+..+.|||..+
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 688999999999998874 24688999999887 6666665445699999965
No 399
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=35.45 E-value=1.6e+02 Score=27.28 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=34.1
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecC
Q 002778 237 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 288 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~ 288 (882)
|.|.-||...-+ ....--..-+.|+++|++++|..|+.-++.|+||...
T Consensus 36 ~~Vvyyd~~~~~---~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEVK---VVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEeE---EeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 567778864322 2221223446799999999999888878889999874
No 400
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=35.28 E-value=1.2e+02 Score=30.58 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=33.2
Q ss_pred CCeEEEEEEcCCcEEEEEEc-------CCEEEEEECCeEEEEECCCCceeE
Q 002778 70 SHCYEHVLRFRSSVCMVRCS-------PRIVAVGLATQIYCFDALTLENKF 113 (882)
Q Consensus 70 TG~~V~tLkf~s~V~sV~~S-------~rlLAV~~d~qI~IWDa~T~e~l~ 113 (882)
....+..|.+...|.+++.- ++.|++|....|-+||+.....++
T Consensus 37 ~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~F 87 (136)
T PF14781_consen 37 QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLF 87 (136)
T ss_pred ccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhh
Confidence 33456677777788887643 478999999999999998766554
No 401
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.92 E-value=1.5e+02 Score=36.02 Aligned_cols=88 Identities=13% Similarity=0.253 Sum_probs=49.0
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCC---CCCC--ccccCCcccEEEEEEecccCCcEEEEEEccCC--
Q 002778 259 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG---SGNH--KYDWNSSHVHLYKLHRGITSATIQDICFSHYS-- 331 (882)
Q Consensus 259 pIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~---sG~~--~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg-- 331 (882)
.|..+..|+.|.++|-++.+|- .|-.+-....+++ .|.. .....+-...+|. -.+.-.+...+|.|++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi--~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft---ss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGL--MVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT---SSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEecCCCceEEEecCCee--EEEEchhhcCccceecCCCceEEEEeecccceeec---cCCceeeeeccccCCccC
Confidence 4667788999999998888773 3444311000000 0000 0000000011121 1111256778999997
Q ss_pred -CEEEEEeCCCeEEEEECCCC
Q 002778 332 -QWIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 332 -~~LAsgS~DGTVhIWdI~~~ 351 (882)
..|..-++|.++|||++...
T Consensus 180 D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred CceEEEEecCcEEEEEecCCc
Confidence 67888889999999999764
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=34.70 E-value=38 Score=36.83 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=46.1
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCC-CCeEEEEECCCCCEEEEE--EcCCCEEEEEecCC
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHT-SPISALCFDPSGTLLVTA--SVYGNNINIFRIMP 289 (882)
Q Consensus 232 tgs~dG~V~VWDl~s~~~v~~f~aH~-spIsaLaFSPdGtlLATA--S~dGt~IrVWdi~p 289 (882)
++..+|.|+.|.+.-.+.+...-.|+ .++..+..+..+..|+.+ |. +.+++.|++.+
T Consensus 119 ~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~-d~~~k~W~ve~ 178 (238)
T KOG2444|consen 119 VGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSH-DRVLKKWNVEK 178 (238)
T ss_pred EeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeecccc-chhhhhcchhh
Confidence 45679999999999888888877888 788888888888888888 76 44688888854
No 403
>PRK13684 Ycf48-like protein; Provisional
Probab=34.43 E-value=1.7e+02 Score=33.11 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=42.0
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEE
Q 002778 257 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 336 (882)
Q Consensus 257 ~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAs 336 (882)
...+.++++.|+|.+++++.. |...+.+| . +. .....+.++ ....+++++|.++++.+++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~--~-------gg---------~tW~~~~~~-~~~~l~~i~~~~~g~~~~v 231 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWE--P-------GQ---------TAWTPHQRN-SSRRLQSMGFQPDGNLWML 231 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcC--C-------CC---------CeEEEeeCC-CcccceeeeEcCCCCEEEE
Confidence 356889999999988877665 65333222 1 10 111222233 3347999999999998777
Q ss_pred EeCCCeEE
Q 002778 337 VSSKGTCH 344 (882)
Q Consensus 337 gS~DGTVh 344 (882)
+ ..|.+.
T Consensus 232 g-~~G~~~ 238 (334)
T PRK13684 232 A-RGGQIR 238 (334)
T ss_pred e-cCCEEE
Confidence 6 457654
No 404
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.88 E-value=1e+02 Score=32.90 Aligned_cols=51 Identities=4% Similarity=0.015 Sum_probs=32.9
Q ss_pred ccccCCeEEEEECCCCeEEEEE-E--------------cCCcEEEEEEcC--CEEEEEECCeEEEEEC
Q 002778 56 CVNSPTAVRFYSFQSHCYEHVL-R--------------FRSSVCMVRCSP--RIVAVGLATQIYCFDA 106 (882)
Q Consensus 56 ~~~sp~tVrlWDlkTG~~V~tL-k--------------f~s~V~sV~~S~--rlLAV~~d~qI~IWDa 106 (882)
++...+.+++||+++++.+..- . ....|..+.++. .-|++-..+..|.||.
T Consensus 27 ~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 27 AITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 4567899999999999987654 1 113466666653 2333333466788874
No 405
>PRK10115 protease 2; Provisional
Probab=33.77 E-value=3.9e+02 Score=33.46 Aligned_cols=113 Identities=5% Similarity=-0.054 Sum_probs=60.0
Q ss_pred CCccccccccc-cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-C----CEEEEEecCCCccc
Q 002778 220 NSVWKVGRHAG-ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-G----NNINIFRIMPSCMR 293 (882)
Q Consensus 220 ss~~k~~~la~-~tgs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~d-G----t~IrVWdi~p~~~~ 293 (882)
+++++.+++.. ..|+..-.|.|.|+.++..+...-.... ..++|.+||+.|+-...+ + ..|..+++.+
T Consensus 135 Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt---- 208 (686)
T PRK10115 135 TPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT---- 208 (686)
T ss_pred CCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC----
Confidence 34445444432 1344556799999998864322222222 459999999866555432 2 2455555532
Q ss_pred CCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCC---CeEEEEECCC
Q 002778 294 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSP 350 (882)
Q Consensus 294 ~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~D---GTVhIWdI~~ 350 (882)
+. .....+++ +.......++..+.|++++...+.. +.+.+++...
T Consensus 209 ---~~------~~d~lv~~---e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 209 ---PA------SQDELVYE---EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred ---Ch------hHCeEEEe---eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 10 01134443 2111111244556699988766554 3578888543
No 406
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=32.36 E-value=2.1e+02 Score=30.95 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=44.7
Q ss_pred CeEEEEECCCCCEEEEEE--cCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEE
Q 002778 259 PISALCFDPSGTLLVTAS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 336 (882)
Q Consensus 259 pIsaLaFSPdGtlLATAS--~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAs 336 (882)
.+.+.++++||+.+|... .++..+.++... + ....+..| ..+..-+|++++...++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--------~-----------~~~~~~~g---~~l~~PS~d~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--------G-----------PVRPVLTG---GSLTRPSWDPDGWVWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--------C-----------cceeeccC---CccccccccCCCCEEEE
Confidence 678899999999888766 556666666542 1 11121122 24777899999877777
Q ss_pred EeCCCeEEEEE
Q 002778 337 VSSKGTCHVFV 347 (882)
Q Consensus 337 gS~DGTVhIWd 347 (882)
...+...+++.
T Consensus 83 ~~~~~~~~~~~ 93 (253)
T PF10647_consen 83 DDGSGGVRVVR 93 (253)
T ss_pred EcCCCceEEEE
Confidence 66666677764
No 407
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=32.10 E-value=1.2e+02 Score=28.28 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=29.4
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 277 (882)
Q Consensus 233 gs~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~ 277 (882)
+...|.+.-||..+++....+.+- .--+.|++++|++.|+.+-.
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEEG
T ss_pred CCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEec
Confidence 456799999999998754444432 24478999999997776644
No 408
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.78 E-value=2.3e+02 Score=34.59 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=59.6
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC--EEEEE----EcCCCEEEEEecCCCcccCCCCCCccccCCcc
Q 002778 234 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT--LLVTA----SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 307 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~v~~f~aH~spIsaLaFSPdGt--lLATA----S~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~ 307 (882)
.....+.--|+..|+++..++-|.. |+-+.|.|++. .|.+. +.+++ +||++.|.. . |-.-..|.+
T Consensus 353 ~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n--~vfriDpRv--~--~~~kl~~~q-- 423 (644)
T KOG2395|consen 353 GEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDN--SVFRIDPRV--Q--GKNKLAVVQ-- 423 (644)
T ss_pred CCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCC--ceEEecccc--c--Ccceeeeee--
Confidence 3345567779999999999998877 88888888763 23221 11233 355554421 0 100011111
Q ss_pred cEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 002778 308 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 308 ~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI 348 (882)
-..+.|+ ...+|++-.-+| +||+||.+|.|||||-
T Consensus 424 --~kqy~~k---~nFsc~aTT~sG-~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 424 --SKQYSTK---NNFSCFATTESG-YIVVGSLKGDIRLYDR 458 (644)
T ss_pred --ccccccc---cccceeeecCCc-eEEEeecCCcEEeehh
Confidence 1122232 235666666665 8999999999999986
No 409
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.77 E-value=3.8e+02 Score=34.42 Aligned_cols=98 Identities=19% Similarity=0.278 Sum_probs=60.3
Q ss_pred ceEEEEECCCC------cEE---EEec----cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCcccc
Q 002778 237 GIVVVKDFVTR------AII---SQFK----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 303 (882)
Q Consensus 237 G~V~VWDl~s~------~~v---~~f~----aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~ 303 (882)
..|+|||+... .++ ..+. ....|++.|+.+-+-..+|.|=.+|. |..+.=.. .+.- |
T Consensus 92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~-V~~~~GDi--~RDr-g------ 161 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGL-VICYKGDI--LRDR-G------ 161 (933)
T ss_pred eEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcE-EEEEcCcc--hhcc-c------
Confidence 37999998632 233 2221 23578999999999888888877675 44443211 1110 1
Q ss_pred CCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 304 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 304 sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
. +..+ ..+| ..+|+.++|..|++-++=......|++|.+..
T Consensus 162 -s--r~~~-~~~~--~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 162 -S--RQDY-SHRG--KEPITGLALRSDGKSVLFVATTEQVMLYSLSG 202 (933)
T ss_pred -c--ceee-eccC--CCCceeeEEecCCceeEEEEecceeEEEEecC
Confidence 0 1222 2344 24799999999998833333345699999983
No 410
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=31.07 E-value=84 Score=38.97 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=56.1
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEE
Q 002778 256 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 335 (882)
Q Consensus 256 H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LA 335 (882)
|...|.--+|+..+.+|+-|+..|. +.+|.-.. | ...+++.. | ....+..++.|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~-------~---------~~~~~~~~-~-~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGS-VYLYNRHT-------G---------EMRKLKNE-G-ATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCceEEEecccce-EEEEecCc-------h---------hhhccccc-C-ccceEEEEEecchhHhhh
Confidence 4455677789999999999988775 77887532 2 01223321 2 223577788999999999
Q ss_pred EEeCCCeEEEEECCC
Q 002778 336 IVSSKGTCHVFVLSP 350 (882)
Q Consensus 336 sgS~DGTVhIWdI~~ 350 (882)
+|+..|-|-||.++.
T Consensus 93 agt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNK 107 (726)
T ss_pred hhcCCceEEeehhhc
Confidence 999999999999987
No 411
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=30.50 E-value=2.3e+02 Score=31.48 Aligned_cols=58 Identities=7% Similarity=0.061 Sum_probs=39.3
Q ss_pred CCeEEEEECCCCeEEEEEEcCCc-------EEEEEEcC-------CEEEEEEC--CeEEEEECCCCceeEEEec
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSS-------VCMVRCSP-------RIVAVGLA--TQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 60 p~tVrlWDlkTG~~V~tLkf~s~-------V~sV~~S~-------rlLAV~~d--~qI~IWDa~T~e~l~tL~t 117 (882)
+-+|-.||++|++.++++.|+.. ..+++++. .++-++.. ..|.|||+.+++..+.+..
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 45677899999999999987543 45666654 24445543 4699999999987555543
No 412
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=30.17 E-value=3.6e+02 Score=30.20 Aligned_cols=70 Identities=17% Similarity=0.316 Sum_probs=45.0
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCc----EEEEEEccCCCEEE
Q 002778 260 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT----IQDICFSHYSQWIA 335 (882)
Q Consensus 260 IsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~----I~sLaFSPDg~~LA 335 (882)
|++|...++|.+|+|+-. -..|-+.|-.+ | ..+++| .|.+... =...+|=.|-+++-
T Consensus 146 iNsV~~~~~G~yLiS~R~-~~~i~~I~~~t-------G----------~I~W~l-gG~~~~df~~~~~~f~~QHdar~~~ 206 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRN-TSTIYKIDPST-------G----------KIIWRL-GGKRNSDFTLPATNFSWQHDARFLN 206 (299)
T ss_pred eeeeeecCCccEEEEecc-cCEEEEEECCC-------C----------cEEEEe-CCCCCCcccccCCcEeeccCCEEec
Confidence 778888899999998765 33343444221 3 355555 2331110 12256667888888
Q ss_pred EEeCCCeEEEEEC
Q 002778 336 IVSSKGTCHVFVL 348 (882)
Q Consensus 336 sgS~DGTVhIWdI 348 (882)
.+..+++|.|||=
T Consensus 207 ~~~~~~~IslFDN 219 (299)
T PF14269_consen 207 ESNDDGTISLFDN 219 (299)
T ss_pred cCCCCCEEEEEcC
Confidence 8889999999985
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=29.94 E-value=2.3e+02 Score=32.33 Aligned_cols=91 Identities=16% Similarity=0.260 Sum_probs=0.0
Q ss_pred cCCCceEEEEEC--------CCCcEEEEecc----CCCCeEEEEECCCCCEEEEEEcCCCEEE----------------E
Q 002778 233 MDNAGIVVVKDF--------VTRAIISQFKA----HTSPISALCFDPSGTLLVTASVYGNNIN----------------I 284 (882)
Q Consensus 233 gs~dG~V~VWDl--------~s~~~v~~f~a----H~spIsaLaFSPdGtlLATAS~dGt~Ir----------------V 284 (882)
++.....++.|. ....++..|.. +......++|.|||.+.++-+..+.... |
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Q ss_pred EecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeCCC
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 341 (882)
Q Consensus 285 Wdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DG 341 (882)
|++.+. + ..+..+..|+.+ .+.|+|+++|+++++-..++
T Consensus 167 ~r~~pd------g----------~~~e~~a~G~rn--p~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 167 FRYNPD------G----------GKLRVVAHGFQN--PYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred EEEecC------C----------CeEEEEecCcCC--CccceECCCCCEEEEccCCC
No 414
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=29.04 E-value=20 Score=43.74 Aligned_cols=92 Identities=13% Similarity=0.192 Sum_probs=58.1
Q ss_pred CCceEEEEECCCC----cEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccE
Q 002778 235 NAGIVVVKDFVTR----AIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 309 (882)
Q Consensus 235 ~dG~V~VWDl~s~----~~v~~f~a-H~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~ 309 (882)
.+-.+.|||+.++ +.-..|.+ -....+++++..+-+++.+|.. -+.+.+||+.-.+.. ...
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~-sr~~~ifdlRqs~~~-------------~~s 192 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT-SRSVHIFDLRQSLDS-------------VSS 192 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc-cchhhhhhhhhhhhh-------------hhh
Confidence 4566899999876 12233443 3345668888888777777766 446899998632100 001
Q ss_pred EEEEEecccCCcEEEEEEcc-CCCEEEEEeCCCeEEEEEC
Q 002778 310 LYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVL 348 (882)
Q Consensus 310 l~~L~RG~t~a~I~sLaFSP-Dg~~LAsgS~DGTVhIWdI 348 (882)
+.+ .-++.+..+| ...|+|+.+ ||-|-|||-
T Consensus 193 vnT-------k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 193 VNT-------KYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred hhh-------hhcccceecCCCCCceeccc-cCceeeccc
Confidence 111 1245566677 667888877 999999994
No 415
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.93 E-value=92 Score=33.28 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=28.3
Q ss_pred EEEEcCCcEEEEEEcCCE-EEEEECCeEEEEECCCCcee
Q 002778 75 HVLRFRSSVCMVRCSPRI-VAVGLATQIYCFDALTLENK 112 (882)
Q Consensus 75 ~tLkf~s~V~sV~~S~rl-LAV~~d~qI~IWDa~T~e~l 112 (882)
-.+...+.|.-+.++... +++..++.+++||+.+++.+
T Consensus 7 P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 7 PPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred CcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 345567777778888765 45566889999999987753
No 416
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=28.50 E-value=8.5e+02 Score=27.04 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=36.1
Q ss_pred ceEEEEECCCCcEEEEeccC------CCCeEEEEECCCC-----CEEEEEEcCCCEEEEEecCC
Q 002778 237 GIVVVKDFVTRAIISQFKAH------TSPISALCFDPSG-----TLLVTASVYGNNINIFRIMP 289 (882)
Q Consensus 237 G~V~VWDl~s~~~v~~f~aH------~spIsaLaFSPdG-----tlLATAS~dGt~IrVWdi~p 289 (882)
-.+.+||+.+.++++++.-. .+-+..|+++... .+.--+...+.-|.|+|+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~ 97 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLAT 97 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTT
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccC
Confidence 36889999999988776422 4568889988732 34445555445688999975
No 417
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=28.45 E-value=1.5e+02 Score=27.39 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.4
Q ss_pred EEEEEccCCCEEEEEe-CCCeEEEEECCC
Q 002778 323 QDICFSHYSQWIAIVS-SKGTCHVFVLSP 350 (882)
Q Consensus 323 ~sLaFSPDg~~LAsgS-~DGTVhIWdI~~ 350 (882)
..|++|||+++|.+++ .+++||+|.+..
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 6799999999988775 578999998753
No 418
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=28.02 E-value=1.2e+02 Score=30.60 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=46.5
Q ss_pred ccCCeEEEEECCCCeEEEEEEcCCcEEEEEEc------CCEEEEEECCeEEEEECCCCceeEEEe
Q 002778 58 NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCS------PRIVAVGLATQIYCFDALTLENKFSVL 116 (882)
Q Consensus 58 ~sp~tVrlWDlkTG~~V~tLkf~s~V~sV~~S------~rlLAV~~d~qI~IWDa~T~e~l~tL~ 116 (882)
.+++.|..||+.....+.--+.++.|.+|.+- ..++.||..-.|+.||....+..+++.
T Consensus 70 Gt~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 70 GTQTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred eccceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 47789999999888877665678889998873 357777777789999988777777764
No 419
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=27.02 E-value=2e+02 Score=34.84 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=42.5
Q ss_pred CeEEEEECCCCeEEEEEEcCCcE--EEEEEcCCEEEEEE-CCeEEEEECCCCceeEEEec
Q 002778 61 TAVRFYSFQSHCYEHVLRFRSSV--CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLkf~s~V--~sV~~S~rlLAV~~-d~qI~IWDa~T~e~l~tL~t 117 (882)
+.|.=||+.||+.+-..+..... ..+.....++.++. ++.+++||+.||+.++..+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 57888999999999887744332 11334556666654 77899999999999998865
No 420
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=26.95 E-value=1.6e+03 Score=29.86 Aligned_cols=95 Identities=12% Similarity=0.151 Sum_probs=56.8
Q ss_pred CceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEE
Q 002778 236 AGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 313 (882)
Q Consensus 236 dG~V~VWDl~s~~~v~~f~--aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L 313 (882)
...+++||+..++.++..+ .-..-|+.++. .+..++.++.+.. +..+...+. + .+++.+
T Consensus 953 G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeS-V~~~~y~~~------~----------n~l~~f 1013 (1205)
T KOG1898|consen 953 GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQES-VHFVRYRRE------D----------NQLIVF 1013 (1205)
T ss_pred ccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccce-EEEEEEecC------C----------CeEEEE
Confidence 3568899998877665443 22445666665 4567777777654 455554431 1 356665
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 002778 314 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 314 ~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhIWdI~~ 350 (882)
.-...+..|+++.+ -|-..+|.+..=|.+++-.+.+
T Consensus 1014 adD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1014 ADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred eCCCccceeeEEEE-ecCCceeeccccCcEEEEECCC
Confidence 42222224555544 5666788888778888877644
No 421
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=26.85 E-value=3.1e+02 Score=29.75 Aligned_cols=43 Identities=9% Similarity=0.314 Sum_probs=31.8
Q ss_pred CCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEEEeC
Q 002778 279 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 339 (882)
Q Consensus 279 Gt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~ 339 (882)
|..|.+|++... . ...+++|. |-..|..|+++.-|.||++-=.
T Consensus 37 g~~Vev~~l~~~------~---------~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 37 GCKVEVYDLEQE------E---------CPLLCTFS---TVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred CCEEEEEEcccC------C---------CceeEEEc---chhheeEEEeccccceEEEEEe
Confidence 667999999631 1 24666664 3357899999999999998643
No 422
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=26.07 E-value=1.2e+02 Score=22.46 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEE
Q 002778 321 TIQDICFSHYSQWIAIVSSKGTCHVFV 347 (882)
Q Consensus 321 ~I~sLaFSPDg~~LAsgS~DGTVhIWd 347 (882)
.|.+|+-++ .|+|++++.+-+|||.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 477787765 5999999999999984
No 423
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=24.71 E-value=2.4e+02 Score=33.24 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=19.9
Q ss_pred EEEeccCC-CCeEEEEECCCCCEEEEEEcC
Q 002778 250 ISQFKAHT-SPISALCFDPSGTLLVTASVY 278 (882)
Q Consensus 250 v~~f~aH~-spIsaLaFSPdGtlLATAS~d 278 (882)
+..+..+. +.=..|+|+|||+|.+|.+..
T Consensus 168 ~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~ 197 (399)
T COG2133 168 FRGIPKGGHHFGGRLVFGPDGKLYVTTGSN 197 (399)
T ss_pred eecCCCCCCcCcccEEECCCCcEEEEeCCC
Confidence 34444321 344679999999999987765
No 424
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=24.56 E-value=4e+02 Score=30.03 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred ccCCCccccccccccccCCCceEEEEECCCCcE---EEEe----ccCCCCeEEEEECCC----CCEEEEEEcC-----CC
Q 002778 217 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI---ISQF----KAHTSPISALCFDPS----GTLLVTASVY-----GN 280 (882)
Q Consensus 217 ~S~ss~~k~~~la~~tgs~dG~V~VWDl~s~~~---v~~f----~aH~spIsaLaFSPd----GtlLATAS~d-----Gt 280 (882)
+.+.++++++. +...|.|++++ ..+.. +..+ .....-+..|+|+|+ +.+.+.-+.. ..
T Consensus 7 ~a~~pdG~l~v-----~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 7 MAFLPDGRLLV-----AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEETTSCEEE-----EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred EEEeCCCcEEE-----EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Q ss_pred EEEEEecCCCcccCCCCCCccccCCcccEEEEEEe-cccCCcEEEEEEccCCCEEEEEeCCC
Q 002778 281 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-GITSATIQDICFSHYSQWIAIVSSKG 341 (882)
Q Consensus 281 ~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~R-G~t~a~I~sLaFSPDg~~LAsgS~DG 341 (882)
..+|.+... ......+......+..+.. ......-..|+|.|||.+.++.++.+
T Consensus 81 ~~~v~r~~~-------~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTL-------SDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEE-------ETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEec-------cCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
No 425
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=24.51 E-value=1.9e+02 Score=22.05 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=15.2
Q ss_pred EEEcCCEEEEE-ECCeEEEEECCC
Q 002778 86 VRCSPRIVAVG-LATQIYCFDALT 108 (882)
Q Consensus 86 V~~S~rlLAV~-~d~qI~IWDa~T 108 (882)
+.+....|.++ .+++++++|+.|
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT-
T ss_pred CEEECCEEEEEcCCCEEEEEeCCC
Confidence 45556666555 478999999875
No 426
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=24.15 E-value=1.7e+02 Score=35.92 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=37.9
Q ss_pred EEEEECCCCCEEEEEEcCC-----CEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEE
Q 002778 261 SALCFDPSGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 335 (882)
Q Consensus 261 saLaFSPdGtlLATAS~dG-----t~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LA 335 (882)
-.|+|+|.|++.+..+..+ ...-+|.+... + ...-.+..+.++-..+.++..+||||++.|.
T Consensus 503 Dnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~------~-------p~~g~~~rf~t~P~g~E~tG~~FspD~~TlF 569 (616)
T COG3211 503 DNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTP------D-------PKTGTIKRFLTGPIGCEFTGPCFSPDGKTLF 569 (616)
T ss_pred CceEECCCCCEEEEecCCCCccCcccccccccccC------C-------CccceeeeeccCCCcceeecceeCCCCceEE
Confidence 4589999998776543222 12234432110 1 0112445555666667999999999998776
Q ss_pred EE
Q 002778 336 IV 337 (882)
Q Consensus 336 sg 337 (882)
++
T Consensus 570 V~ 571 (616)
T COG3211 570 VN 571 (616)
T ss_pred EE
Confidence 54
No 427
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=23.92 E-value=3.9e+02 Score=30.21 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=40.4
Q ss_pred EEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccC
Q 002778 240 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 319 (882)
Q Consensus 240 ~VWDl~s~~~v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~ 319 (882)
.-||-....-..+-+.-...|.+|.|+|+|.+...+ . |..|+.=+. +. ....|.. .+..+. ...
T Consensus 169 ~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~-Gg~~~~s~~-~~--------~~~~w~~---~~~~~~--~~~ 232 (302)
T PF14870_consen 169 SSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-R-GGQIQFSDD-PD--------DGETWSE---PIIPIK--TNG 232 (302)
T ss_dssp EEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-T-TTEEEEEE--TT--------EEEEE------B-TTS--S--
T ss_pred EEecCCCccceEEccCccceehhceecCCCCEEEEe-C-CcEEEEccC-CC--------Ccccccc---ccCCcc--cCc
Confidence 456543322233334456789999999999987765 4 555655441 10 0011111 001110 111
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeE
Q 002778 320 ATIQDICFSHYSQWIAIVSSKGTC 343 (882)
Q Consensus 320 a~I~sLaFSPDg~~LAsgS~DGTV 343 (882)
--|.+|+|.++....|+++. |++
T Consensus 233 ~~~ld~a~~~~~~~wa~gg~-G~l 255 (302)
T PF14870_consen 233 YGILDLAYRPPNEIWAVGGS-GTL 255 (302)
T ss_dssp S-EEEEEESSSS-EEEEEST-T-E
T ss_pred eeeEEEEecCCCCEEEEeCC-ccE
Confidence 24899999999888887764 444
No 428
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=23.60 E-value=2.7e+02 Score=29.68 Aligned_cols=48 Identities=13% Similarity=-0.077 Sum_probs=37.6
Q ss_pred CCeEEE--EEEcCCcEEEEEEcCCEEEEEECCeEEEEECCCCceeEEEec
Q 002778 70 SHCYEH--VLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT 117 (882)
Q Consensus 70 TG~~V~--tLkf~s~V~sV~~S~rlLAV~~d~qI~IWDa~T~e~l~tL~t 117 (882)
.|+..+ ++++.+...++.+..-+|.+..++.|.||++.++++++++..
T Consensus 216 ~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 216 NGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CCCcCcccEEEcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 555444 566777788888877777777778899999999999988864
No 429
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=23.34 E-value=1.2e+02 Score=36.31 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=25.9
Q ss_pred cEEEEEEcc----CCCEEEEEeCCCeEEEEECCCCCC
Q 002778 321 TIQDICFSH----YSQWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 321 ~I~sLaFSP----Dg~~LAsgS~DGTVhIWdI~~~gg 353 (882)
...+++++. +..+|++.+.|+++||||+.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 456667766 889999999999999999998765
No 430
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=23.19 E-value=1.7e+03 Score=28.63 Aligned_cols=59 Identities=14% Similarity=-0.016 Sum_probs=39.5
Q ss_pred cCCeEEEEECCCCeEEEEEEcCCcEE-------------EEE----EcCCEEEEEE-----------CCeEEEEECCCCc
Q 002778 59 SPTAVRFYSFQSHCYEHVLRFRSSVC-------------MVR----CSPRIVAVGL-----------ATQIYCFDALTLE 110 (882)
Q Consensus 59 sp~tVrlWDlkTG~~V~tLkf~s~V~-------------sV~----~S~rlLAV~~-----------d~qI~IWDa~T~e 110 (882)
.++.|.=.|.+||+.+..+...+.|- .+. +...+|+++. .+.|+-||+.||+
T Consensus 268 ~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 268 SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 45666777999999997765433331 111 1235666653 3459999999999
Q ss_pred eeEEEec
Q 002778 111 NKFSVLT 117 (882)
Q Consensus 111 ~l~tL~t 117 (882)
.+.....
T Consensus 348 l~W~~~~ 354 (764)
T TIGR03074 348 LVWAWDP 354 (764)
T ss_pred EeeEEec
Confidence 9998864
No 431
>PHA02713 hypothetical protein; Provisional
Probab=22.86 E-value=1.4e+03 Score=27.73 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=30.3
Q ss_pred CeEEEEECCCCeEEEEEE---cCCcEEEEEEcCCEEEEEEC------CeEEEEECCCC
Q 002778 61 TAVRFYSFQSHCYEHVLR---FRSSVCMVRCSPRIVAVGLA------TQIYCFDALTL 109 (882)
Q Consensus 61 ~tVrlWDlkTG~~V~tLk---f~s~V~sV~~S~rlLAV~~d------~qI~IWDa~T~ 109 (882)
.+|..||.++++....-. -+.....+.+..++.++|.. ..+.+||..+.
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 568889998876432111 22334455667777777652 23788888765
No 432
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.77 E-value=2.5e+02 Score=33.80 Aligned_cols=91 Identities=13% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCEEEE
Q 002778 257 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 336 (882)
Q Consensus 257 ~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~LAs 336 (882)
.++|.++.||+|.+.||.--. ...|.+++..+..+ ...+...--..++.|....|+.. .-||.
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~-~~~v~f~nf~~d~~---------------~l~~~~~ck~k~~~IlGF~W~~s-~e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRT-SKTVDFCNFIPDNS---------------QLEYTQECKTKNANILGFCWTSS-TEIAF 128 (657)
T ss_pred CCceeEEEeccCcceEEEEec-CceEEEEecCCCch---------------hhHHHHHhccCcceeEEEEEecC-eeEEE
Q ss_pred EeCCCeEEEEECCCCCCcccc-ccccCCCC
Q 002778 337 VSSKGTCHVFVLSPFGGDSGF-QTLSSQGG 365 (882)
Q Consensus 337 gS~DGTVhIWdI~~~gg~~~l-~~H~~~~~ 365 (882)
.++.| +.+|.+.+......+ ++|+..+.
T Consensus 129 i~~~G-~e~y~v~pekrslRlVks~~~nvn 157 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEKRSLRLVKSHNLNVN 157 (657)
T ss_pred EecCC-eEEEEEchhhhhhhhhhhcccCcc
No 433
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=22.23 E-value=1.8e+02 Score=20.77 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=17.8
Q ss_pred EEEEEECCeEEEEECCCCceeEEE
Q 002778 92 IVAVGLATQIYCFDALTLENKFSV 115 (882)
Q Consensus 92 lLAV~~d~qI~IWDa~T~e~l~tL 115 (882)
+++...++.++.+|+.+++.+++.
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEEc
Confidence 444455788999999999887654
No 434
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=22.01 E-value=31 Score=33.32 Aligned_cols=13 Identities=46% Similarity=0.897 Sum_probs=10.3
Q ss_pred ccCccccccccee
Q 002778 865 DAEDDEMLGGMFA 877 (882)
Q Consensus 865 ~~~~~~~~~~~~~ 877 (882)
..++|+||+|+|.
T Consensus 97 EE~~~~~lf~LF~ 109 (109)
T COG2058 97 EESDDDMLFGLFG 109 (109)
T ss_pred hcccccchhhccC
Confidence 4468899999994
No 435
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=22.00 E-value=6.7e+02 Score=29.44 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=0.0
Q ss_pred CCCceEEEEECCCCcE-EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEecCCCcccCCCCCCccccCCccc----
Q 002778 234 DNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV---- 308 (882)
Q Consensus 234 s~dG~V~VWDl~s~~~-v~~f~aH~spIsaLaFSPdGtlLATAS~dGt~IrVWdi~p~~~~~~sG~~~~d~sss~~---- 308 (882)
+..|.+..=+-..... ...-..-...+.++.|.++|.+++.+.. |..++--|- | .
T Consensus 256 g~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~-G~l~~S~d~---------G----------~~~~~ 315 (398)
T PLN00033 256 SSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG-GGLYVSKGT---------G----------LTEED 315 (398)
T ss_pred ECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC-ceEEEecCC---------C----------Ccccc
Q ss_pred -EEEEEEecccCCcEEEEEEccCCCEEEEEeCCCeEEE
Q 002778 309 -HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 345 (882)
Q Consensus 309 -~l~~L~RG~t~a~I~sLaFSPDg~~LAsgS~DGTVhI 345 (882)
.+.++.+......|.++.|.+|+..+++| .+|.+.+
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~ 352 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLR 352 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEE
No 436
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=21.65 E-value=3.8e+02 Score=24.94 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=17.5
Q ss_pred EEEEEEecccCCcEEEEEEccCCCEEEEE
Q 002778 309 HLYKLHRGITSATIQDICFSHYSQWIAIV 337 (882)
Q Consensus 309 ~l~~L~RG~t~a~I~sLaFSPDg~~LAsg 337 (882)
....+.+|.. --..|++|+|+++|..+
T Consensus 48 ~~~vl~~~L~--fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 48 ETTVLLDGLY--FPNGVALSPDESFVLVA 74 (89)
T ss_dssp EEEEEEEEES--SEEEEEE-TTSSEEEEE
T ss_pred eEEEehhCCC--ccCeEEEcCCCCEEEEE
Confidence 4444555543 34789999999987665
No 437
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=21.63 E-value=2.3e+02 Score=33.91 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=14.7
Q ss_pred EEEEECCCCCEEEEEEcCC
Q 002778 261 SALCFDPSGTLLVTASVYG 279 (882)
Q Consensus 261 saLaFSPdGtlLATAS~dG 279 (882)
..|+|.|||.|.++.+..|
T Consensus 149 grI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 149 GRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred ceEEECCCCcEEEEECCCC
Confidence 4688999999888766543
No 438
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=21.46 E-value=1.7e+02 Score=21.09 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=20.8
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEE
Q 002778 322 IQDICFSHYSQWIAIVSSKGTCHVF 346 (882)
Q Consensus 322 I~sLaFSPDg~~LAsgS~DGTVhIW 346 (882)
..+|+++++|+.+++=+....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4678999999999888888888776
No 439
>PRK10115 protease 2; Provisional
Probab=20.92 E-value=4.6e+02 Score=32.83 Aligned_cols=73 Identities=11% Similarity=0.166 Sum_probs=43.2
Q ss_pred CCeEEEEECCCCCEEEEEEcC-CC---EEEEEecCCCcccCCCCCCccccCCcccEEEEEEecccCCcEEEEEEccCCCE
Q 002778 258 SPISALCFDPSGTLLVTASVY-GN---NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 333 (882)
Q Consensus 258 spIsaLaFSPdGtlLATAS~d-Gt---~IrVWdi~p~~~~~~sG~~~~d~sss~~~l~~L~RG~t~a~I~sLaFSPDg~~ 333 (882)
-.+..+.+||||++||-+-.. |. .|+|-|+.+ | ..+-+. ..... ..++|++|++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-------g----------~~l~~~---i~~~~-~~~~w~~D~~~ 185 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-------G----------NWYPEL---LDNVE-PSFVWANDSWT 185 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-------C----------CCCCcc---ccCcc-eEEEEeeCCCE
Confidence 357788999999999876432 32 356666642 2 111111 11122 45999999998
Q ss_pred EEEEeCC-C-----eEEEEECCCC
Q 002778 334 IAIVSSK-G-----TCHVFVLSPF 351 (882)
Q Consensus 334 LAsgS~D-G-----TVhIWdI~~~ 351 (882)
|..+..+ + .|..+++.+.
T Consensus 186 ~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 186 FYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EEEEEecCCCCCCCEEEEEECCCC
Confidence 8887654 2 3555555543
Done!