Query 002778
Match_columns 882
No_of_seqs 299 out of 2123
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 18:01:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002778.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1492-1496//hhsearch_pdb/002778hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vu4_A KMHSV2; beta-propeller 1.0 1 1 190.3 31.1 243 60-477 80-339 (355)
2 1nr0_A Actin interacting prote 1.0 1 1 174.7 27.6 222 59-358 37-278 (611)
3 4gqb_B Methylosome protein 50; 1.0 1 1 174.1 25.5 216 58-351 100-332 (344)
4 1vyh_C Platelet-activating fac 1.0 1 1 172.4 26.3 43 78-120 106-151 (410)
5 3ow8_A WD repeat-containing pr 1.0 1 1 170.7 27.4 225 58-360 55-289 (321)
6 4g56_B MGC81050 protein; prote 1.0 1 1 169.9 23.2 113 232-362 156-270 (357)
7 4h5i_A Guanine nucleotide-exch 1.0 1 1 165.9 25.6 218 59-350 102-343 (365)
8 1got_B GT-beta; complex (GTP-b 1.0 1 1 165.3 30.6 110 233-360 202-311 (340)
9 1vyh_C Platelet-activating fac 1.0 1 1 165.1 25.6 224 59-360 128-379 (410)
10 1nr0_A Actin interacting prote 1.0 1 1 164.7 26.1 233 59-353 79-358 (611)
No 1
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=1.00 E-value=1 Score=190.31 Aligned_cols=243 Identities=18% Similarity=0.145 Sum_probs=156.9
Q ss_pred CCEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEECCEEEEEECCCC-CEEEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99599998899909999976995799999497999997990999979999-54699942899656787743422231025
Q 002778 60 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPM 138 (882)
Q Consensus 60 pttVrIWDLkTG~~V~tLkf~S~V~sI~~s~riLAVsld~qI~IwDa~Tl-e~l~tL~t~p~p~~~~~~~~g~~~~~g~l 138 (882)
+++|++||+++++.+.++.+.+.|.++.++++.++++.++.|++||+.+. +.+.++.+ + .+.+
T Consensus 80 d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~-------------~~~~ 143 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---F-------------GGVC 143 (355)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---E-------------EEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEECCEEEEEECCCCCEEEEEECC---C-------------CCEE
T ss_conf 66899999999959999987884678997498799999398999988877304577616---8-------------9469
Q ss_pred EECCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77475899908970762678888765789887898689999307886200003434012100123222337899988855
Q 002778 139 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 218 (882)
Q Consensus 139 AlgpRwLAYas~~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~llp~gs~s~~s 218 (882)
++.+.++|++
T Consensus 144 ~~s~~~la~~---------------------------------------------------------------------- 153 (355)
T 3vu4_A 144 EFSNGLLVYS---------------------------------------------------------------------- 153 (355)
T ss_dssp EEETTEEEEE----------------------------------------------------------------------
T ss_pred EEECCEEEEE----------------------------------------------------------------------
T ss_conf 9980689996----------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCC----------------EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 797554221246456889649999799881----------------8988024898859999889999999998599989
Q 002778 219 PNSVWKVGRHAGADMDNAGIVVVKDFVTRA----------------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNI 282 (882)
Q Consensus 219 ~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~----------------~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~I 282 (882)
.+..+|.|++||+.++. .+..+.+|..+|.+++|+|+|++|||++.||+.|
T Consensus 154 -------------sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 154 -------------NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII 220 (355)
T ss_dssp -------------ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred -------------CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf -------------8886868999988788765323355443434761179976678458999999999999995899899
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 99966888655899998544688630799997235577289999912999999992899099997788998532235667
Q 002778 283 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 362 (882)
Q Consensus 283 rIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~gg~~~l~~H~~ 362 (882)
+|||+.. + ..+..+.+|.+...|.+++|+||+++|++++.|++++||++........
T Consensus 221 ~iwd~~~-------~----------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~------ 277 (355)
T 3vu4_A 221 RVFKTED-------G----------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKR------ 277 (355)
T ss_dssp EEEETTT-------C----------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCS------
T ss_pred EEEECCC-------C----------CEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCC------
T ss_conf 9999899-------9----------5978987389988489999879999999998999799998668877554------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 88887336777888533799965555469999810120000100686433235533224678634565308745036733
Q 002778 363 QGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIA 442 (882)
Q Consensus 363 ~v~~~~~~pv~slpw~~~s~~~~~Q~~~~~~~~~~ls~vsrIk~~~~gw~g~vs~a~s~at~~~~~ps~~va~~Fh~~~~ 442 (882)
..+.+. .+|.++.+.|+++++..+.... +...+.++-.++
T Consensus 278 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~a~~~d~-- 317 (355)
T 3vu4_A 278 ----HALKGW-INMKYFQSEWSLCNFKLSVDKH---------------------------------VRGCKIAWISES-- 317 (355)
T ss_dssp ----EETTTT-EECCCCCCSSCSEEEECCCCTT---------------------------------CCCCEEEESSSS--
T ss_pred ----CCCCCE-EECCCCCCCCCEEEEEECCCCC---------------------------------CCCEEEEEECCC--
T ss_conf ----421224-5023114664126998116788---------------------------------995199996899--
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCC
Q ss_conf 44564445667725199993786099994134899
Q 002778 443 HSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIG 477 (882)
Q Consensus 443 ~~~~~~~~~~~~~~rLlV~Sp~G~Li~Y~L~p~~g 477 (882)
..|++++.||.+..|++.+...
T Consensus 318 -------------~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 318 -------------SLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp -------------EEEEEETTTTEEEEEEEEEETT
T ss_pred -------------CEEEEEECCCEEEEEEEECCCC
T ss_conf -------------8999996898699999872999
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=174.73 Aligned_cols=222 Identities=15% Similarity=0.185 Sum_probs=157.8
Q ss_pred CCCEEEEEECCCCEEEEEEE-CCCCEEEEEECC--CEEEEEE-CCEEEEEECCCCC--EEEEEECCCCCCCCCCCCCCCC
Q ss_conf 59959999889990999997-699579999949--7999997-9909999799995--4699942899656787743422
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGIN 132 (882)
Q Consensus 59 ~pttVrIWDLkTG~~V~tLk-f~S~V~sI~~s~--riLAVsl-d~qI~IwDa~Tle--~l~tL~t~p~p~~~~~~~~g~~ 132 (882)
..++|++|++++++...++. |...|..++|++ ++||++. ++.|++||+.+.+ ...++..+..+
T Consensus 37 ~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~----------- 105 (611)
T 1nr0_A 37 NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP----------- 105 (611)
T ss_dssp ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSC-----------
T ss_pred CCCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCC-----------
T ss_conf 999799945787242737658998659999999996899994899789948989841566762255784-----------
Q ss_pred CCCEEEEECC--CEEEEECC------CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCC
Q ss_conf 2310257747--58999089------707626788887657898878986899993078862000034340121001232
Q 002778 133 VGYGPMAVGP--RWLAYASN------TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY 204 (882)
Q Consensus 133 ~~~g~lAlgp--RwLAYas~------~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky 204 (882)
...++++| ++||.++. .+.+|+.|.. .+.+.+ +
T Consensus 106 --v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~-~~~l~g------------------------------------h 146 (611)
T 1nr0_A 106 --VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS-NGNLTG------------------------------------Q 146 (611)
T ss_dssp --EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-CBCCCC------------------------------------C
T ss_pred --EEEEEECCCCCEEEEEECCCCCEEEEEEEECCCC-CCEECC------------------------------------C
T ss_conf --4899989999979999899773669999638997-632547------------------------------------8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 22337899988855797554221246456889649999799881898802489885999988999999999859998999
Q 002778 205 CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINI 284 (882)
Q Consensus 205 ~~~llp~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrI 284 (882)
. +....+.+++..... +. +++.|++|++||....+.+..+.+|...|.+++|+|+|++||+++.||+ |+|
T Consensus 147 ~------~~v~~v~f~p~~~~~-l~--s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~-i~l 216 (611)
T 1nr0_A 147 A------RAMNSVDFKPSRPFR-II--SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVL 216 (611)
T ss_dssp S------SCEEEEEECSSSSCE-EE--EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEE
T ss_pred C------CCCEEEEECCCCCEE-EE--EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCC-EEE
T ss_conf 8------983699988999829-99--9928980999979997576652002571699999799998999989991-999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEEEEEE------CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 9668886558999985446886307999972------3557728999991299999999289909999778899853223
Q 002778 285 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR------GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 358 (882)
Q Consensus 285 fdI~p~~~~~~sG~~~~~~s~~~~~l~~L~R------G~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~gg~~~l~ 358 (882)
|++.. | ..+..+.. + +...|.+++|+||+++|++++.|++++||++........+.
T Consensus 217 wd~~~-------g----------~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~ 278 (611)
T 1nr0_A 217 YNGVD-------G----------TKTGVFEDDSLKNVA-HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP 278 (611)
T ss_dssp EETTT-------C----------CEEEECBCTTSSSCS-SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EECCC-------C----------CEEEEECCCCCCCCC-CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC
T ss_conf 88999-------8----------286651366432356-67878999997999999999089809999688870134404
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=174.13 Aligned_cols=216 Identities=15% Similarity=0.137 Sum_probs=149.4
Q ss_pred CCCCEEEEEECCCCEEEEEEE-----CCCCEEEEEECC--CEEEEEE-CCEEEEEECCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 259959999889990999997-----699579999949--7999997-99099997999954699942899656787743
Q 002778 58 NSPTAVRFYSFQSHCYEHVLR-----FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAV 129 (882)
Q Consensus 58 ~~pttVrIWDLkTG~~V~tLk-----f~S~V~sI~~s~--riLAVsl-d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~ 129 (882)
....+|++||+.+++.+..++ |.+.|.+|+|++ ++|+++. ++.|++||+.+.+.+.++..|..+
T Consensus 100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~-------- 171 (344)
T 4gqb_B 100 SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ-------- 171 (344)
T ss_dssp ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--------
T ss_pred ECCCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCC--------
T ss_conf 897989999653887435860134678997899999899899999949893999999999699997576885--------
Q ss_pred CCCCCCEEEEECC---CEEEEE--CCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCC
Q ss_conf 4222310257747---589990--89707626788887-65789887898689999307886200003434012100123
Q 002778 130 GINVGYGPMAVGP---RWLAYA--SNTLLLSNSGRLSP-QNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK 203 (882)
Q Consensus 130 g~~~~~g~lAlgp---RwLAYa--s~~~~iw~sG~vsp-q~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsk 203 (882)
...+++.+ ..++.+ +..+.+|+.....+ ..+... ..+..
T Consensus 172 -----V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--------~~~~~---------------------- 216 (344)
T 4gqb_B 172 -----VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS--------APGYL---------------------- 216 (344)
T ss_dssp -----EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------CCC----------------------
T ss_pred -----EEEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECC--------EEECC----------------------
T ss_conf -----5788865899974011034435510234455200111010--------00012----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCC-CEEEEEECCCCE
Q ss_conf 2223378999888557975-54221246456889649999799881898802489885999988999-999999859998
Q 002778 204 YCQELLPDGSSSPVSPNSV-WKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNN 281 (882)
Q Consensus 204 y~~~llp~gs~s~~s~ss~-~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsG-tlLATAS~dGt~ 281 (882)
...+.+++. ...+. +++.+|.|+|||+.+++.+.++.+|..+|.+++|+|+| .+||+++.||+
T Consensus 217 ----------~~~~~~~p~~~~~l~----sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~- 281 (344)
T 4gqb_B 217 ----------PTSLAWHPQQSEVFV----FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS- 281 (344)
T ss_dssp ----------EEEEEECSSCTTEEE----EEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-
T ss_pred ----------CEEEEECCCCCCCEE----EECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCE-
T ss_conf ----------123566179996058----86158718989899995989983788998899992699909999938994-
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCC
Q ss_conf 999966888655899998544688630799997235577289999912999-9999928990999977889
Q 002778 282 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPF 351 (882)
Q Consensus 282 IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~-~LAssS~dGTVhIwdI~~~ 351 (882)
|+|||+.. + .+.++ +|+ ...|++++|||+++ .|++++.|++|++|++...
T Consensus 282 i~vwd~~~-------~-----------~~~~~-~~H-~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 282 LAVLDSSL-------S-----------ELFRS-QAH-RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEECTTC-------C-----------EEEEE-CCC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EEEEECCC-------C-----------CEEEE-CCC-CCCEEEEEEECCCCEEEEEECCCCEEEEEECCCC
T ss_conf 99999999-------9-----------69997-288-9977899991799969999937995999989998
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=172.38 Aligned_cols=43 Identities=19% Similarity=0.100 Sum_probs=29.8
Q ss_pred ECCCCEEEEEECC--CEEEEE-ECCEEEEEECCCCCEEEEEECCCC
Q ss_conf 7699579999949--799999-799099997999954699942899
Q 002778 78 RFRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPV 120 (882)
Q Consensus 78 kf~S~V~sI~~s~--riLAVs-ld~qI~IwDa~Tle~l~tL~t~p~ 120 (882)
.|.+.|..+.|++ .+++++ .++.|++||+.+.+.+.++..|..
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~ 151 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 151 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
T ss_conf 6677689999969999899993898599998999937788816678
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=170.71 Aligned_cols=225 Identities=20% Similarity=0.201 Sum_probs=155.8
Q ss_pred CCCCEEEEEECCCCEEEE--EEE-CCCCEEEEEECC--CEEEEE-ECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 259959999889990999--997-699579999949--799999-79909999799995469994289965678774342
Q 002778 58 NSPTAVRFYSFQSHCYEH--VLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 131 (882)
Q Consensus 58 ~~pttVrIWDLkTG~~V~--tLk-f~S~V~sI~~s~--riLAVs-ld~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~ 131 (882)
..+.+|++|++.+++... +++ |...|.++.+++ .+++.+ .+..|++||+.+.+.+.++..++..
T Consensus 55 s~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~---------- 124 (321)
T 3ow8_A 55 SLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD---------- 124 (321)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC----------
T ss_pred CCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCC----------
T ss_conf 4999899988989974366600567788899998899998999937980999978999798999379856----------
Q ss_pred CCCCEEEEECC--CEEEEECC--CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCC
Q ss_conf 22310257747--58999089--707626788887657898878986899993078862000034340121001232223
Q 002778 132 NVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 207 (882)
Q Consensus 132 ~~~~g~lAlgp--RwLAYas~--~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~ 207 (882)
...++++| ++||.++. .+.+|+... +....... .
T Consensus 125 ---~~~~~~spdg~~l~~g~~dg~v~i~~~~~-------------------~~~~~~~~----------------~---- 162 (321)
T 3ow8_A 125 ---AWTLAFSPDSQYLATGTHVGKVNIFGVES-------------------GKKEYSLD----------------T---- 162 (321)
T ss_dssp ---CCCEEECTTSSEEEEECTTSEEEEEETTT-------------------CSEEEEEE----------------C----
T ss_pred ---EEEEEECCCCCEEEEECCCCCEEEEECCC-------------------CCEEEEEC----------------C----
T ss_conf ---79999999999899983899199998679-------------------94667743----------------8----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEC
Q ss_conf 37899988855797554221246456889649999799881898802489885999988999999999859998999966
Q 002778 208 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 287 (882)
Q Consensus 208 llp~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI 287 (882)
.......+.++++++.++ ++..+|.|++||+.+++.+..+.+|..+|.+++|+|+|.+||+++.+|+ |+||++
T Consensus 163 --~~~~v~~~~~spdg~~la----sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~ 235 (321)
T 3ow8_A 163 --RGKFILSIAYSPDGKYLA----SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDV 235 (321)
T ss_dssp --SSSCEEEEEECTTSSEEE----EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEET
T ss_pred --CCCEEEEEEECCCCCEEE----EECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCE-EEEEEC
T ss_conf --994299999989999999----9928983999999999099998025896018999489998999909980-999878
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf 8886558999985446886307999972355772899999129999999928990999977889985322356
Q 002778 288 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 360 (882)
Q Consensus 288 ~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~gg~~~l~~H 360 (882)
.. + ..+..+ .|+ ...|.+++|+||+++|++++.|++++||++........+..|
T Consensus 236 ~~-------~----------~~~~~~-~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h 289 (321)
T 3ow8_A 236 QH-------A----------NLAGTL-SGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH 289 (321)
T ss_dssp TT-------C----------CEEEEE-CCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CC-------C----------CEEEEE-CCC-CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCC
T ss_conf 99-------6----------325898-688-882689999799998999818980999949998888898378
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=1.00 E-value=1 Score=169.92 Aligned_cols=113 Identities=12% Similarity=0.144 Sum_probs=67.8
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCC-CEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 56889649999799881898802489885999988999-99999985999899996688865589999854468863079
Q 002778 232 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 310 (882)
Q Consensus 232 tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsG-tlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l 310 (882)
+++.+|.|+|||+.+++.+..+.+|..+|.+++|+|++ .+|++++.+|+ |+|||+... ..+
T Consensus 156 sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~-v~~wd~~~~-----------------~~~ 217 (357)
T 4g56_B 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR-ILLWDTRKP-----------------KPA 217 (357)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC-EEECCTTSS-----------------SCB
T ss_pred EEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEECCCCC-EEEEECCCC-----------------CEE
T ss_conf 99698939999899995999982778978899983688722665505786-388788999-----------------640
Q ss_pred EEEEECCCCCCEEEEEECCCC-CEEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 999723557728999991299-9999992899099997788998532235667
Q 002778 311 YKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 362 (882)
Q Consensus 311 ~~L~RG~t~A~I~sIaFSpDs-~~LAssS~dGTVhIwdI~~~gg~~~l~~H~~ 362 (882)
..+........+.+++|+|++ ++|++++.|++++||++........+..|..
T Consensus 218 ~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~ 270 (357)
T 4g56_B 218 TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ 270 (357)
T ss_dssp CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSS
T ss_pred EEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCE
T ss_conf 12330023344421111213530599821354206898999958289935531
No 7
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=1.00 E-value=1 Score=165.90 Aligned_cols=218 Identities=17% Similarity=0.148 Sum_probs=131.4
Q ss_pred CCCEEEEEECCCCE-EEE---EEEC------CCCEEEEEECC--CEEEEEE---CCEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 59959999889990-999---9976------99579999949--7999997---99099997999954699942899656
Q 002778 59 SPTAVRFYSFQSHC-YEH---VLRF------RSSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQL 123 (882)
Q Consensus 59 ~pttVrIWDLkTG~-~V~---tLkf------~S~V~sI~~s~--riLAVsl---d~qI~IwDa~Tle~l~tL~t~p~p~~ 123 (882)
...++++|++.+.. .+. ...+ ...++.|+|++ ++++++. +..|++||+.+++.++++.. ..+
T Consensus 102 ~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~-~~~-- 178 (365)
T 4h5i_A 102 GNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET-RGE-- 178 (365)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC-SSC--
T ss_pred CCCCEEEEEECCCCCEEEEEEEECEEECCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECC-CCC--
T ss_conf 99918999953888527776610204268864278999992899989999989999899968999839899579-995--
Q ss_pred CCCCCCCCCCCCEEEEECC--CEEEEECC-CEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCC
Q ss_conf 7877434222310257747--58999089-7076267--88887657898878986899993078862000034340121
Q 002778 124 AGQGAVGINVGYGPMAVGP--RWLAYASN-TLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 198 (882)
Q Consensus 124 ~~~~~~g~~~~~g~lAlgp--RwLAYas~-~~~iw~s--G~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagii 198 (882)
...++++| ++||+++. ...+|+. +...... +. .....
T Consensus 179 -----------V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~-~~--------~~~~~------------------ 220 (365)
T 4h5i_A 179 -----------VKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARK-TD--------FDKNW------------------ 220 (365)
T ss_dssp -----------CCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEE-CC--------CCTTE------------------
T ss_pred -----------EEEEEECCCCCEEEECCCEEEEEEEECCCCCEEEE-EC--------CCCCC------------------
T ss_conf -----------68889714885478403205899995268501124-41--------78899------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE----EEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 001232223378999888557975542212464568896499997998818----9880248988599998899999999
Q 002778 199 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHTSPISALCFDPSGTLLVT 274 (882)
Q Consensus 199 ktlsky~~~llp~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~----i~~l~aH~spIsaLaFSPsGtlLAT 274 (882)
....+.++++.+.+.....++.....+++||+..... ...+..|..+|.+++|+|+|++||+
T Consensus 221 --------------~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 221 --------------SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp --------------EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred --------------CEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCEECCEEEEEECCCCCCEEEEEECCCCCCEEE
T ss_conf --------------889999948999789996588630699613444210000122442388887676798898773599
Q ss_pred EECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 9859998999966888655899998544688630799997235577289999912999999992899099997788
Q 002778 275 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 275 AS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~ 350 (882)
++.||+ |+|||+.. + ..+..+.+|+. ..|++|+||||+++||++|.|+||+||+|..
T Consensus 287 gs~D~~-V~iwd~~~-------~----------~~~~~~~~gH~-~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 287 ASNDNS-IALVKLKD-------L----------SMSKIFKQAHS-FAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EETTSC-EEEEETTT-------T----------EEEEEETTSSS-SCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ECCCCE-EEEEECCC-------C----------CEEEEECCCCC-CCEEEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf 848998-99999999-------9----------49788637445-9879999989999999992899499999589
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=165.35 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=54.1
Q ss_pred CCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 68896499997998818988024898859999889999999998599989999668886558999985446886307999
Q 002778 233 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 312 (882)
Q Consensus 233 gs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPsGtlLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~ 312 (882)
++.+|.|++||+.++..+..+.+|..+|.+++|+|+|.+||+++.||+ |+|||+... ..+..
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~-----------------~~~~~ 263 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRAD-----------------QELMT 263 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT-----------------EEEEE
T ss_pred EECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCC-EEEEECCCC-----------------CEEEE
T ss_conf 938993999778998167897487687799999499998999748981-999988999-----------------18999
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf 972355772899999129999999928990999977889985322356
Q 002778 313 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 360 (882)
Q Consensus 313 L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~~gg~~~l~~H 360 (882)
+........|.+++|+|++++|++++.||+++||++........+.+|
T Consensus 264 ~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h 311 (340)
T 1got_B 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311 (340)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ECCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf 726885241699999899999999779990999884138386585057
No 9
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=165.10 Aligned_cols=224 Identities=16% Similarity=0.200 Sum_probs=143.6
Q ss_pred CCCEEEEEECCCCEEEEEEE-CCCCEEEEEECC--CEEEEEE-CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 59959999889990999997-699579999949--7999997-9909999799995469994289965678774342223
Q 002778 59 SPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 134 (882)
Q Consensus 59 ~pttVrIWDLkTG~~V~tLk-f~S~V~sI~~s~--riLAVsl-d~qI~IwDa~Tle~l~tL~t~p~p~~~~~~~~g~~~~ 134 (882)
.+.+|++||+.+++.+++++ |...|.++.|++ ++|+++. +..|++||+.+.+++.++..|..+
T Consensus 128 ~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~------------- 194 (410)
T 1vyh_C 128 EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN------------- 194 (410)
T ss_dssp SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC-------------
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCC-------------
T ss_conf 8985999989999377888166786878998599999999918981999958998266998289997-------------
Q ss_pred CEEEEECC--CEEEEEC--CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 10257747--5899908--9707626788887657898878986899993078862000034340121001232223378
Q 002778 135 YGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 210 (882)
Q Consensus 135 ~g~lAlgp--RwLAYas--~~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsky~~~llp 210 (882)
...+++.| ++|+.++ ..+.+|+... +..+. ++.++..
T Consensus 195 V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-------------------~~~~~----------------~~~~h~~---- 235 (410)
T 1vyh_C 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQT-------------------GYCVK----------------TFTGHRE---- 235 (410)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTT-------------------CCEEE----------------EEECCSS----
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCC-------------------CCEEE----------------EEECCCC----
T ss_conf 78999967999999996899699998999-------------------94899----------------9927886----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCC--------------------CC
Q ss_conf 9998885579755422124645688964999979988189880248988599998899--------------------99
Q 002778 211 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS--------------------GT 270 (882)
Q Consensus 211 ~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~aH~spIsaLaFSPs--------------------Gt 270 (882)
....+.++++...+. +++.+|.|++||+.+......+..|..+|.+++|+|+ |.
T Consensus 236 --~v~~~~~~~~g~~l~----s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (410)
T 1vyh_C 236 --WVRMVRPNQDGTLIA----SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309 (410)
T ss_dssp --CEEEEEECTTSSEEE----EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred --CEEEEEECCCCCEEE----EECCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf --289999989999999----99189909999898974366733787458999985865543101212555556678888
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 99999859998999966888655899998544688630799997235577289999912999999992899099997788
Q 002778 271 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 350 (882)
Q Consensus 271 lLATAS~dGt~IrIfdI~p~~~~~~sG~~~~~~s~~~~~l~~L~RG~t~A~I~sIaFSpDs~~LAssS~dGTVhIwdI~~ 350 (882)
+|++++.||+ |++||+.. + ..+..+. |+ ...|.+++|+|++++|++++.||+++||++..
T Consensus 310 ~l~sgs~D~~-i~iwd~~~-------~----------~~~~~~~-~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 310 FLLSGSRDKT-IKMWDVST-------G----------MCLMTLV-GH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369 (410)
T ss_dssp EEEEEETTSE-EEEEETTT-------T----------EEEEEEE-CC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred EEEEEECCCE-EEEEECCC-------C----------CEEEEEE-CC-CCCEEEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf 9999938984-99998899-------9----------6699997-78-88589999949989999995979299998999
Q ss_pred CCCCCCCCCC
Q ss_conf 9985322356
Q 002778 351 FGGDSGFQTL 360 (882)
Q Consensus 351 ~gg~~~l~~H 360 (882)
......+..|
T Consensus 370 ~~~~~~~~~h 379 (410)
T 1vyh_C 370 KRCMKTLNAH 379 (410)
T ss_dssp SCCCEEEECC
T ss_pred CCEEEEECCC
T ss_conf 9068998477
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=164.66 Aligned_cols=233 Identities=15% Similarity=0.164 Sum_probs=134.9
Q ss_pred CCCEEEEEECCCCE--EEEEEE-CCCCEEEEEECC--CEEEEEECC-----EEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 59959999889990--999997-699579999949--799999799-----09999799995469994289965678774
Q 002778 59 SPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSP--RIVAVGLAT-----QIYCFDALTLENKFSVLTYPVPQLAGQGA 128 (882)
Q Consensus 59 ~pttVrIWDLkTG~--~V~tLk-f~S~V~sI~~s~--riLAVsld~-----qI~IwDa~Tle~l~tL~t~p~p~~~~~~~ 128 (882)
.+.+|++||+.+++ ...++. |.+.|.+|+|++ +.|+++... .|++||. .+.+.++..|..+
T Consensus 79 ~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~------- 149 (611)
T 1nr0_A 79 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARA------- 149 (611)
T ss_dssp TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSC-------
T ss_pred CCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEC--CCCCCEECCCCCC-------
T ss_conf 8997899489898415667622557844899989999979999899773669999638--9976325478898-------
Q ss_pred CCCCCCCEEEEECC--C-EEEEEC--CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCC
Q ss_conf 34222310257747--5-899908--970762678888765789887898689999307886200003434012100123
Q 002778 129 VGINVGYGPMAVGP--R-WLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK 203 (882)
Q Consensus 129 ~g~~~~~g~lAlgp--R-wLAYas--~~~~iw~sG~vspq~lt~p~vs~s~Sp~~gsLVa~yA~essk~laagiiktlsk 203 (882)
...+++.| . .||.++ ..+.+|+... +... .++.+
T Consensus 150 ------v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-------------------~~~~----------------~~l~~ 188 (611)
T 1nr0_A 150 ------MNSVDFKPSRPFRIISGSDDNTVAIFEGPP-------------------FKFK----------------STFGE 188 (611)
T ss_dssp ------EEEEEECSSSSCEEEEEETTSCEEEEETTT-------------------BEEE----------------EEECC
T ss_pred ------CEEEEECCCCCEEEEEEECCCEEEEEECCC-------------------CEEE----------------EEECC
T ss_conf ------369998899982999992898099997999-------------------7576----------------65200
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC-------CCCCCEEEEEECCCCCEEEEEE
Q ss_conf 222337899988855797554221246456889649999799881898802-------4898859999889999999998
Q 002778 204 YCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-------AHTSPISALCFDPSGTLLVTAS 276 (882)
Q Consensus 204 y~~~llp~gs~s~~s~ss~~k~~~~~~~tgs~dG~V~IwDi~s~~~i~~l~-------aH~spIsaLaFSPsGtlLATAS 276 (882)
+. +....+.++++++.++ +++.||+|+|||+.+++.+..+. +|..+|.+++|+|+|++|||++
T Consensus 189 H~------~~V~~v~fspdg~~la----s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 189 HT------KFVHSVRYNPDGSLFA----STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp CS------SCEEEEEECTTSSEEE----EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred CC------CCEEEEEECCCCCEEE----EEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEE
T ss_conf 25------7169999979999899----9989991999889998286651366432356678789999979999999990
Q ss_pred CCCCEEEEEECCCCCCCC-C-CCC-C-----CCCCCC-----------------CCCEEEEEEECCCCCCEEEEEECCCC
Q ss_conf 599989999668886558-9-999-8-----544688-----------------63079999723557728999991299
Q 002778 277 VYGNNINIFRIMPSCMRS-G-SGN-H-----KYDWNS-----------------SHVHLYKLHRGITSATIQDICFSHYS 331 (882)
Q Consensus 277 ~dGt~IrIfdI~p~~~~~-~-sG~-~-----~~~~s~-----------------~~~~l~~L~RG~t~A~I~sIaFSpDs 331 (882)
.|++ |+|||+....... . .+. . ...|.. ..........|+ ...|.+++|+||+
T Consensus 259 ~D~~-v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh-~~~v~~l~~spdg 336 (611)
T 1nr0_A 259 ADKT-IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH-NKAITALSSSADG 336 (611)
T ss_dssp TTSE-EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC-SSCEEEEEECTTS
T ss_pred CCCE-EEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCC-CCCEEEEEEECCC
T ss_conf 8980-9999688870134404788766406899973887999958996899968899744698378-8888999991899
Q ss_pred CEEEEEECCCEEEEEECCCCCC
Q ss_conf 9999992899099997788998
Q 002778 332 QWIAIVSSKGTCHVFVLSPFGG 353 (882)
Q Consensus 332 ~~LAssS~dGTVhIwdI~~~gg 353 (882)
++|++++.|+++++|++.....
T Consensus 337 ~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 337 KTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCE
T ss_pred CEEEEEECCCCEEEEECCCCCE
T ss_conf 9899995898499997887925
Done!