Query 002779
Match_columns 882
No_of_seqs 241 out of 1276
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 18:21:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002779.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1492-1496//hhsearch_pdb/002779hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8f_A Poly(A) RNA polymerase 1.0 1 1 394.0 26.6 286 29-352 31-365 (405)
2 3nyb_A Poly(A) RNA polymerase 1.0 1 1 391.3 23.5 273 35-352 14-300 (323)
3 4fh3_A Poly(A) RNA polymerase 1.0 1 1 390.1 24.1 279 38-352 12-337 (349)
4 3hj4_A Minor editosome-associa 1.0 1 1 378.3 22.3 292 39-352 4-368 (384)
5 2ikf_A RNA uridylyl transferas 1.0 1 1 376.6 18.4 270 42-349 28-349 (353)
6 2b4v_A RNA editing complex pro 1.0 1 1 361.4 24.1 287 25-352 3-441 (468)
7 3pq1_A Poly(A) RNA polymerase; 1.0 1 1 355.2 26.1 251 32-353 117-440 (464)
8 1q79_A Poly(A) polymerase alph 1.0 1 1 344.5 28.8 272 40-354 36-354 (514)
9 2hhp_A Poly(A) polymerase; tem 1.0 1 1 343.1 30.5 271 40-353 23-340 (530)
10 1r89_A TRNA nucleotidyltransfe 1.0 1 1 137.2 24.4 234 42-350 3-247 (437)
No 1
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=1.00 E-value=1 Score=394.01 Aligned_cols=286 Identities=21% Similarity=0.344 Sum_probs=227.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEEECCCCCCCCCEEEEEECCC
Q ss_conf 988888945599999999999999199989999999999999999973-1299824990000698889996489998599
Q 002779 29 SNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (882)
Q Consensus 29 ~~p~~I~~e~w~~lee~i~eli~~I~PTeeE~~~R~~VI~~L~~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDIvI~~~~ 107 (882)
+.+..+..+.|.++++++.+|+++++||++|.++|+.++++|+.+|+. |++++|++|||+++|+++|+|||||++..+.
T Consensus 31 ~~~~~~~~~~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~ 110 (405)
T 4e8f_A 31 SCSYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDS 110 (405)
T ss_dssp -------CCSCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEEECC
T ss_conf 57533381479999999999999809799999999999999999999878997799985554799899999789997268
Q ss_pred CC-CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE-EEEEEEEEEE-E--C----CEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 97-3689999999999874212233322588998-4103379984-5--8----86899854058863207999999987
Q 002779 108 NV-EEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCL-V--Q----NIVVDISFNQLGGLSTLCFLEQVDRL 178 (882)
Q Consensus 108 ~~-~~~ll~~I~~~L~k~~~n~~~ef~Vk~V~vI-~ARVPIIKf~-~--s----GI~VDISfNn~~Gl~ts~lLe~i~~~ 178 (882)
.. ...++..+...|++. . .+|+.| +||||||||+ + + ||.|||||+|..|+.++.|+.. |
T Consensus 111 ~~~~~~~l~~l~~~L~~~------~---~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll~~---y 178 (405)
T 4e8f_A 111 RVQSDTIALQFYEELIAE------G---FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSS---Y 178 (405)
T ss_dssp ---CTTHHHHHHHHHHHT------T---EEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHHHH---H
T ss_pred CCCHHHHHHHHHHHHHHC------C---CEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHH---H
T ss_conf 999999999999999860------7---744886257786799996147776686489876245415777999999---9
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCC---------------------------
Q ss_conf 179813478999999999996172485679988699999999999-8659899---------------------------
Q 002779 179 IGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIF-HLFHSSL--------------------------- 230 (882)
Q Consensus 179 i~kdp~fk~LvlLIK~Wak~e~rIl~a~~GgLSSYaL~LMVI~fL-Q~~~p~l--------------------------- 230 (882)
...+++|++|+++||+||+ ++++++++.|+||||+|++|||+|| |...|.+
T Consensus 179 ~~~~p~~r~Lv~~lK~wak-~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~ 257 (405)
T 4e8f_A 179 TKLDARLKPMVLLVKHWAK-RKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLE 257 (405)
T ss_dssp HHHCTTHHHHHHHHHHHHH-HTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGG
T ss_pred HHHCHHHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCHH
T ss_conf 8618788999999999999-748986757985769999999999972358875770432366666551775401010424
Q ss_pred -------CCHHH-HHHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC--CC
Q ss_conf -------88399-9999997303-6667762587147854478985200167888997544878999997531678--88
Q 002779 231 -------NGPLA-VLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVP--SR 299 (882)
Q Consensus 231 -------~~pLe-lL~~FFeyYs-~FDw~k~~ISI~GPvplssL~~~~~e~pe~~g~~~ll~kEfLk~~~~~fs~~--~r 299 (882)
..+++ +|++||+||+ +|||.+.+||++.+ |+ .+.++... +... ..
T Consensus 258 ~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~-----------------g~--~~~K~~k~-----w~~~~~~~ 313 (405)
T 4e8f_A 258 DIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRP-----------------DG--YLTKQEKG-----WTSATEHT 313 (405)
T ss_dssp GSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSST-----------------TC--CCBHHHHT-----CCC-----
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECC-----------------CC--CCCCCCCC-----CCCCCCCC
T ss_conf 32266663569999999999972026899847998168-----------------86--33320015-----56533445
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889999899664982999999981336697779999999999999999755
Q 002779 300 GFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHIL 352 (882)
Q Consensus 300 g~e~~~~~f~~k~L~IeDPld~~nNLGRSVs~~n~~rIr~AF~~Aa~~L~~il 352 (882)
|..... ......||||||+++++|+||+|+..++.+|+.+|+.|++.|....
T Consensus 314 g~~~~~-~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~ 365 (405)
T 4e8f_A 314 GSADQI-IKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS 365 (405)
T ss_dssp ---------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCC-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 542223-5677627997888756555567788999999999999999985203
No 2
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=391.32 Aligned_cols=273 Identities=19% Similarity=0.343 Sum_probs=223.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCC--H
Q ss_conf 945599999999999999199989999999999999999973-1299824990000698889996489998599973--6
Q 002779 35 GAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVE--E 111 (882)
Q Consensus 35 ~~e~w~~lee~i~eli~~I~PTeeE~~~R~~VI~~L~~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDIvI~~~~~~~--~ 111 (882)
..+....|+++|.+|+++++||++|.++|.++++.|++++++ |++++|++|||+++|+++|+||||+++..+.... .
T Consensus 14 ~~~~~~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~ 93 (323)
T 3nyb_A 14 QKEISDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESR 93 (323)
T ss_dssp CSSHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHH
T ss_conf 53399999999999999869699999999999999999999988998799957635599899998149995488871678
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEE-EEEEEEEEEEE--CCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 89999999999874212233322588998-41033799845--8868998540588632079999999871798134789
Q 002779 112 ALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLV--QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRS 188 (882)
Q Consensus 112 ~ll~~I~~~L~k~~~n~~~ef~Vk~V~vI-~ARVPIIKf~~--sGI~VDISfNn~~Gl~ts~lLe~i~~~i~kdp~fk~L 188 (882)
..+..+...|++. . .+.+|++| +||||||||++ +||.|||||++..|+.++.++ ..++..+++|++|
T Consensus 94 ~~l~~l~~~L~~~------~-~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li---~~~~~~~~~~r~l 163 (323)
T 3nyb_A 94 NNLYSLASHLKKK------N-LATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLI---REWLDDTPGLREL 163 (323)
T ss_dssp HHHHHHHHHHHHT------T-SCSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHH---HHHHHSCTTHHHH
T ss_pred HHHHHHHHHHHHC------C-CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHH---HHHHHHHHHHHHH
T ss_conf 9999999998557------9-8427999751578779999757780688884373899999999---9997752528899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC------CCHH-HHHHHHHHHHC-CCCCCCCEEECCCCC
Q ss_conf 999999999961724856799886999999999998659899------8839-99999997303-666776258714785
Q 002779 189 IILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSL------NGPL-AVLYKFLDYFS-KFDWDSYCISLNGPV 260 (882)
Q Consensus 189 vlLIK~Wak~e~rIl~a~~GgLSSYaL~LMVI~fLQ~~~p~l------~~pL-elL~~FFeyYs-~FDw~k~~ISI~GPv 260 (882)
+++||+||+ ++++++++.|+||||+|++||++|||++++.+ ..++ ++|++||+||+ +|||.+++||++...
T Consensus 164 v~~iK~wak-~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~ 242 (323)
T 3nyb_A 164 VLIVKQFLH-ARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGY 242 (323)
T ss_dssp HHHHHHHHH-HTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSC
T ss_pred HHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 999999999-7499976579847799999999999748866766678624599999999999636068997179984498
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 44789852001678889975448789999975316788898889999899664982999999981336697779999999
Q 002779 261 RISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSA 340 (882)
Q Consensus 261 plssL~~~~~e~pe~~g~~~ll~kEfLk~~~~~fs~~~rg~e~~~~~f~~k~L~IeDPld~~nNLGRSVs~~n~~rIr~A 340 (882)
+ ..+.++.+. .+ .. ......||||||++++||+||++. ++.+|+.+
T Consensus 243 ~------------------~~~~k~~~~----~~-------~~---~~~~~~l~IeDP~~~~~nigr~~~--~~~~I~~~ 288 (323)
T 3nyb_A 243 P------------------VYFPKSTWS----AI-------QP---IKNPFSLAIQDPGDESNNISRGSF--NIRDIKKA 288 (323)
T ss_dssp E------------------EEEEGGGCG----GG-------CS---CSCSSSCCBEETTEEEEETTTTCT--THHHHHHH
T ss_pred C------------------CEEEHHHCC----CC-------CC---CCCCCEEEEECCCCCCCCCCCCHH--HHHHHHHH
T ss_conf 6------------------044677601----00-------24---677753798689987764564648--79999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999755
Q 002779 341 FTYGARKLGHIL 352 (882)
Q Consensus 341 F~~Aa~~L~~il 352 (882)
|+.|++.|.+..
T Consensus 289 F~~A~~~L~~~~ 300 (323)
T 3nyb_A 289 FAGAFDLLTNRC 300 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999864
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=1.00 E-value=1 Score=390.10 Aligned_cols=279 Identities=20% Similarity=0.305 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCH-HHHH
Q ss_conf 599999999999999199989999999999999999973-12998249900006988899964899985999736-8999
Q 002779 38 YWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEE-ALAN 115 (882)
Q Consensus 38 ~w~~lee~i~eli~~I~PTeeE~~~R~~VI~~L~~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDIvI~~~~~~~~-~ll~ 115 (882)
....++..+.+++++++||++|.++|.+++++|+++|+. ||+++|++|||+++|+++|+||||+|+..+..... .+..
T Consensus 12 ~~~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~~ 91 (349)
T 4fh3_A 12 SHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIAL 91 (349)
T ss_dssp CCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 89999999999999709899999999999999999999988998999971144789997989779996588878589999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEE-EEEEEEEEEEE-------CCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 9999999874212233322588998-41033799845-------886899854058863207999999987179813478
Q 002779 116 DVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLV-------QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKR 187 (882)
Q Consensus 116 ~I~~~L~k~~~n~~~ef~Vk~V~vI-~ARVPIIKf~~-------sGI~VDISfNn~~Gl~ts~lLe~i~~~i~kdp~fk~ 187 (882)
.+...+.+ .. ..++.| +||||||||++ .++.|||||++..|++++.++. .+...+++||+
T Consensus 92 ~~~~~~~~------~~---~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~~t~ll~---~~~~~~~~~r~ 159 (349)
T 4fh3_A 92 QFYEELIA------EG---FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLS---SYTKLDARLKP 159 (349)
T ss_dssp HHHHHHHH------TT---EEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHHHHHHHH---HHHHHCTTHHH
T ss_pred HHHHHHHH------HC---CCCEEEEEEEEEEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHH---HHHHCCHHHHH
T ss_conf 99999875------01---46557554043359998414566435624546767626888999999---98620877889
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCC----------------------------------CC
Q ss_conf 9999999999961724856799886999999999998659-899----------------------------------88
Q 002779 188 SIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFH-SSL----------------------------------NG 232 (882)
Q Consensus 188 LvlLIK~Wak~e~rIl~a~~GgLSSYaL~LMVI~fLQ~~~-p~l----------------------------------~~ 232 (882)
|+++||+||+ ++++++++.|+||||+|++|||+|||+.. +.+ ..
T Consensus 160 l~~~iK~wak-~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~ 238 (349)
T 4fh3_A 160 MVLLVKHWAK-RKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYS 238 (349)
T ss_dssp HHHHHHHHHH-HTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCC
T ss_pred HHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 9999999999-849998678987729999999999973467876806664454566313576355442033325544754
Q ss_pred HH-HHHHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 39-99999997303-66677625871478544789852001678889975448789999975316788898889999899
Q 002779 233 PL-AVLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPP 310 (882)
Q Consensus 233 pL-elL~~FFeyYs-~FDw~k~~ISI~GPvplssL~~~~~e~pe~~g~~~ll~kEfLk~~~~~fs~~~rg~e~~~~~f~~ 310 (882)
++ ++|++||+||+ +|||.+.+||++.+. ..+.++...+. ................
T Consensus 239 slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~-------------------~~~~k~~k~~~----~~~~~~~~~~~~~~~~ 295 (349)
T 4fh3_A 239 SLGSLLHGFFRFYAYKFEPREKVVTFRRPD-------------------GYLTKQEKGWT----SATEHTGSADQIIKDR 295 (349)
T ss_dssp CHHHHHHHHHHHHHHTCCTTTBCBCSSSTT-------------------CCCBHHHHTCC-------------------C
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEECCCC-------------------CCCCHHHHCCC----CCCCCCCCCCCCCCCC
T ss_conf 389999999998642058778469843898-------------------86556774344----4444567533457788
Q ss_pred CCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 664982999999981336697779999999999999999755
Q 002779 311 KHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHIL 352 (882)
Q Consensus 311 k~L~IeDPld~~nNLGRSVs~~n~~rIr~AF~~Aa~~L~~il 352 (882)
+.||||||++++||+||+|+..++.+|+.+|+.|++.|....
T Consensus 296 ~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~ 337 (349)
T 4fh3_A 296 YILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS 337 (349)
T ss_dssp CSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 359998999898737999898999999999999999972745
No 4
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=1.00 E-value=1 Score=378.32 Aligned_cols=292 Identities=18% Similarity=0.236 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCC-----HH
Q ss_conf 99999999999999199989999999999999999973-1299824990000698889996489998599973-----68
Q 002779 39 WQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVE-----EA 112 (882)
Q Consensus 39 w~~lee~i~eli~~I~PTeeE~~~R~~VI~~L~~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDIvI~~~~~~~-----~~ 112 (882)
-++++++|.+|+++++||++|.++|.+++.+|+++|+. |++++|++|||+++|+++|+|||||||..+.... +.
T Consensus 4 ~~~lt~EI~dFy~~i~PT~eE~~~R~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~~~~~~ 83 (384)
T 3hj4_A 4 KREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMER 83 (384)
T ss_dssp HHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGGTTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCH
T ss_conf 66789999999997399989999999999999999998789967999514557898999985699963787642232110
Q ss_pred H-HHHHHHH--HHHHHHCCCCCCCEEEEEEEEEEEEEEEEEE--CCEEEEEEECCCCCCCHHHHHHHHHHHHCC-CCHHH
Q ss_conf 9-9999999--9987421223332258899841033799845--886899854058863207999999987179-81347
Q 002779 113 L-ANDVCSV--LEREDQNKAAEFVVKDAQLIRAEVKLVKCLV--QNIVVDISFNQLGGLSTLCFLEQVDRLIGK-DHLFK 186 (882)
Q Consensus 113 l-l~~I~~~--L~k~~~n~~~ef~Vk~V~vI~ARVPIIKf~~--sGI~VDISfNn~~Gl~ts~lLe~i~~~i~k-dp~fk 186 (882)
. ...+... |.+. .....+++|.+++||||||||++ +||.|||||||..|+.++.++..+ ... +++++
T Consensus 84 ~~~~~~lrll~L~k~----~~~~~ie~V~ii~ARVPIIKf~d~~tgi~~DIS~nn~~gi~ns~ll~~y---~~~~p~rlr 156 (384)
T 3hj4_A 84 VDEQNNKRMTRFGKE----ASAMGMEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAI---RQVFPDFYG 156 (384)
T ss_dssp HHHHHHHHHHHHHHH----HHHHTCEEEEEECSSSCEEEEECTTTCCEEEEEECCHHHHHHHHHHHHH---HHTSHHHHH
T ss_pred HHHHHHHHHHHHHHH----CCCCCEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHH---HHCCCHHHH
T ss_conf 567889999999730----4337705873348645779999868890798996265048999999998---742869899
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCC--------------------------------
Q ss_conf 89999999999961724856799886999999999998659--89988--------------------------------
Q 002779 187 RSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFH--SSLNG-------------------------------- 232 (882)
Q Consensus 187 ~LvlLIK~Wak~e~rIl~a~~GgLSSYaL~LMVI~fLQ~~~--p~l~~-------------------------------- 232 (882)
+|+++||+||+ ++++++++.|+||||+|++|||+|||+++ |.+..
T Consensus 157 ~LvllvK~Wak-~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N 235 (384)
T 3hj4_A 157 AYIHLVKAWGK-AREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDD 235 (384)
T ss_dssp HHHHHHHHHHH-HTTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSC
T ss_pred HHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999999-83899766899408999999999994389898646532248854356607666540378876767888
Q ss_pred --HH-HH----HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCC--------------------CCCCCCCCCCCCHH
Q ss_conf --39-99----99999730366677625871478544789852001--------------------67888997544878
Q 002779 233 --PL-AV----LYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVE--------------------TPENSGGDLLLSSE 285 (882)
Q Consensus 233 --pL-el----L~~FFeyYs~FDw~k~~ISI~GPvplssL~~~~~e--------------------~pe~~g~~~ll~kE 285 (882)
.| ++ |++||+||++|||.+.+|||+.|....+++..++. .++. | .+.+.
T Consensus 236 ~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~---~~~~~ 311 (384)
T 3hj4_A 236 DEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKED-G---PLDEN 311 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGG-C---SCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCC-C---CCCCC
T ss_conf 1559988777999999986244888877995177666553101112123100403540246654035667-8---88987
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999975316788898889999899664982999999981336697779999999999999999755
Q 002779 286 FLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHIL 352 (882)
Q Consensus 286 fLk~~~~~fs~~~rg~e~~~~~f~~k~L~IeDPld~~nNLGRSVs~~n~~rIr~AF~~Aa~~L~~il 352 (882)
-....+.. +.... + ....+.||| |...+|+||.|.......||.+|+++++.+..-.
T Consensus 312 ~~~~~~~~------~~~~~--~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (384)
T 3hj4_A 312 DFSASMQN------ETTQR--P-SNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKE 368 (384)
T ss_dssp HHHHHHHH------HHHTS--C-SSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTTG
T ss_pred CCCCCCCC------CCCCC--C-CCCCEEEEE-ECCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 53345675------21005--6-666255220-0011230103176400599999999999985631
No 5
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=1.00 E-value=1 Score=376.63 Aligned_cols=270 Identities=19% Similarity=0.245 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEEE-CCCCCCCCCEEEEEECCCCC----------
Q ss_conf 99999999999199989999999999999999973-1299824990000-69888999648999859997----------
Q 002779 42 AEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVP-LKTYLPDGDIDLTAFGGLNV---------- 109 (882)
Q Consensus 42 lee~i~eli~~I~PTeeE~~~R~~VI~~L~~iI~~-~p~a~V~~FGS~~-tGL~LP~SDIDIvI~~~~~~---------- 109 (882)
+++++.+++..+.++.+|.+.|++++++|+++|+. +++++|++|||++ +|+++|+||||+++..+..+
T Consensus 28 l~~~l~~~~~~~~~~~~e~~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~ 107 (353)
T 2ikf_A 28 VGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAAT 107 (353)
T ss_dssp HHHHHHHHTTTTCC-----CCHHHHHHHHHHHHHHHCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHH
T ss_conf 99999999998558701199999999999999999889908998237641688998766238986255556664433024
Q ss_pred ------CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE-EEEEEEEEEEE-CCEEEEEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf ------3689999999999874212233322588998-41033799845-886899854058863207999999987179
Q 002779 110 ------EEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLV-QNIVVDISFNQLGGLSTLCFLEQVDRLIGK 181 (882)
Q Consensus 110 ------~~~ll~~I~~~L~k~~~n~~~ef~Vk~V~vI-~ARVPIIKf~~-sGI~VDISfNn~~Gl~ts~lLe~i~~~i~k 181 (882)
...++..+...|++. .. +.+|+.| +||||||||++ .+|.|||||+|..|+.+++++.. +...
T Consensus 108 ~~~~~~~~~~l~~l~~~L~~~-----~~--~~~v~~i~~ArVPIiK~~~~~~i~~Dis~~n~~g~~~t~ll~~---~~~~ 177 (353)
T 2ikf_A 108 QVAKGLQADILAKLARVIRQK-----HL--SWNVEEVRRTRVPVVRVKGGGAVDFDITAYRRNGVRNSALLRA---YFEQ 177 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----CT--TSEEEEECSSSSCEEEEECSSSCEEEEEESCCHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC-----CC--CCCEEEECCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHH---HHHH
T ss_conf 455566999999999999836-----88--8746994246636999985897179988258538999999999---9986
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHHCC--CCC-------------------------CCH
Q ss_conf 81347899999999999617248567-99886999999999998659--899-------------------------883
Q 002779 182 DHLFKRSIILIKAWCYYESRILGAHH-GLISTYALETLVLYIFHLFH--SSL-------------------------NGP 233 (882)
Q Consensus 182 dp~fk~LvlLIK~Wak~e~rIl~a~~-GgLSSYaL~LMVI~fLQ~~~--p~l-------------------------~~p 233 (882)
+|+|++|+++||+||+ ++++++++. |+||||+|++||++|||+.. |.+ ..+
T Consensus 178 ~p~~r~l~~~iK~wa~-~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~s 256 (353)
T 2ikf_A 178 NPPCRWLSMSIKRWSK-QTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLE 256 (353)
T ss_dssp STTHHHHHHHHHHHHH-HTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHH
T ss_pred CCCHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 9229999999999999-869998777998349999999999997268899768111676551577767765667778455
Q ss_pred H-HHHHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH--HHHCCCCCCCCCCCCCCCC
Q ss_conf 9-99999997303-666776258714785447898520016788899754487899999--7531678889888999989
Q 002779 234 L-AVLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKEC--VEQFSVPSRGFDTNSRSFP 309 (882)
Q Consensus 234 L-elL~~FFeyYs-~FDw~k~~ISI~GPvplssL~~~~~e~pe~~g~~~ll~kEfLk~~--~~~fs~~~rg~e~~~~~f~ 309 (882)
+ ++|++||+||+ +|||.+.+||++.+. .+.++...+. ...+. . .+ ....
T Consensus 257 lg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~--------------------~~~k~~~~w~~~~~~~~--~----~~-~~~~ 309 (353)
T 2ikf_A 257 LGTQVLDFLHFFLHEFDSDKQVISLNRPG--------------------ITTKEELDWTKSAEDFA--R----MN-GEKV 309 (353)
T ss_dssp HHHHHHHHHHHHHHTSCTTTEEECSSSSS--------------------CEEHHHHTCSHHHHTTC--E----ET-TEEC
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCC--------------------CEECHHHCCCCCCCCCC--C----CC-CCCC
T ss_conf 99999999999632057674289767996--------------------02404304453323111--1----35-7777
Q ss_pred CCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9664982999999981336697779999999999999999
Q 002779 310 PKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLG 349 (882)
Q Consensus 310 ~k~L~IeDPld~~nNLGRSVs~~n~~rIr~AF~~Aa~~L~ 349 (882)
...||||||++++||+||+|+..++.+|+.+|+.|++++.
T Consensus 310 ~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~~ 349 (353)
T 2ikf_A 310 HYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTAL 349 (353)
T ss_dssp CCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6638998999999865679898999999999999999999
No 6
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=1.00 E-value=1 Score=361.42 Aligned_cols=287 Identities=17% Similarity=0.221 Sum_probs=223.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEE-ECCCCCCCCCEEEE
Q ss_conf 9999988888945599999999999999199989999999999999999973-129982499000-06988899964899
Q 002779 25 SSVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSV-PLKTYLPDGDIDLT 102 (882)
Q Consensus 25 ~~~~~~p~~I~~e~w~~lee~i~eli~~I~PTeeE~~~R~~VI~~L~~iI~~-~p~a~V~~FGS~-~tGL~LP~SDIDIv 102 (882)
.+.++....-..+.|..+...+.+......+++++.+.|..++.+|+.+|++ |++++|++|||+ .+|+++|+||||+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~ 82 (468)
T 2b4v_A 3 LSLPSTKLNPSPDHYAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLA 82 (468)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCCCEEEE
T ss_conf 78887667987689999999999999724998899999999999999999997799489984173102789999863689
Q ss_pred EECCCCCCHH-----HHHHHHHHHHHHHHCCCCCCCEEEEEEE-EEEEEEEEEE----E---------------------
Q ss_conf 9859997368-----9999999999874212233322588998-4103379984----5---------------------
Q 002779 103 AFGGLNVEEA-----LANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCL----V--------------------- 151 (882)
Q Consensus 103 I~~~~~~~~~-----ll~~I~~~L~k~~~n~~~ef~Vk~V~vI-~ARVPIIKf~----~--------------------- 151 (882)
+......... ...++...|++.. ..+.+.+++.| +||||||||+ +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~ 158 (468)
T 2b4v_A 83 CMFDDPYPSHEVQAKRTDKLRTVIKRYV----PHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTA 158 (468)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHHHHTTS----CHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEE
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHC----CCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8348877661135778999999999722----466521058615787436999954665321111233333323221000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 002779 152 -------------------------------------------------------------------------------- 151 (882)
Q Consensus 152 -------------------------------------------------------------------------------- 151 (882)
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf 238 (468)
T 2b4v_A 159 LLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRF 238 (468)
T ss_dssp EEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTS
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 00111111122100000110021122221223456554301321564102221001343210122322221223322224
Q ss_pred ----CCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf ----886899854058863207999999987179813-478999999999996172485679988699999999999865
Q 002779 152 ----QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHL-FKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLF 226 (882)
Q Consensus 152 ----sGI~VDISfNn~~Gl~ts~lLe~i~~~i~kdp~-fk~LvlLIK~Wak~e~rIl~a~~GgLSSYaL~LMVI~fLQ~~ 226 (882)
+||+|||||| ..|+.|+.++..+ ...+|+ +++|+++||+||+ ++++++++.|+||||+|++|||+|||+.
T Consensus 239 ~~~~~gi~~DISfn-~~gi~nS~ll~~y---~~~dpr~~r~Lvl~vK~Wak-~r~Ln~~~~G~LsSYal~lMVI~fLQ~~ 313 (468)
T 2b4v_A 239 VPEMFMYRWDISFV-GYGVKNSYLIRHY---LHNGPVAARHTAMAVKAWGK-ATNVGAGSGAMLTSYAVTVMFIYYLLVT 313 (468)
T ss_dssp CCGGGSSCEEEESC-SHHHHHHHHHHHH---HHHSCTTHHHHHHHHHHHHH-TCC-----CCSSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEECC-HHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 65456627997446-4699999999999---84383989999999999999-8699974679802899999999999862
Q ss_pred C--CCC------------------------CCHH-HHHHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9--899------------------------8839-99999997303-666776258714785447898520016788899
Q 002779 227 H--SSL------------------------NGPL-AVLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGG 278 (882)
Q Consensus 227 ~--p~l------------------------~~pL-elL~~FFeyYs-~FDw~k~~ISI~GPvplssL~~~~~e~pe~~g~ 278 (882)
. |.+ ..+| ++|++||+||+ +|||.+.+||++.+.
T Consensus 314 ~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g~------------------ 375 (468)
T 2b4v_A 314 RQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNR------------------ 375 (468)
T ss_dssp TSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSS------------------
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCC------------------
T ss_conf 76777785346646556666677851246856799999999999703068898579844895------------------
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCEEECCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7544878999997531678889888--999989966498299999----9981336697779999999999999999755
Q 002779 279 DLLLSSEFLKECVEQFSVPSRGFDT--NSRSFPPKHLNIVDPLKE----NNNLGRSVSKGNFYRIRSAFTYGARKLGHIL 352 (882)
Q Consensus 279 ~~ll~kEfLk~~~~~fs~~~rg~e~--~~~~f~~k~L~IeDPld~----~nNLGRSVs~~n~~rIr~AF~~Aa~~L~~il 352 (882)
.+.++.. +|.. +...-....|||||||++ ++|+||+|+..++.+|+.+|+.|++.|.+..
T Consensus 376 --~~~K~~~------------~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 376 --RSYRSDI------------GWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp --CEEHHHH------------TCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred --CEECCCC------------CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf --0354101------------45654455677754389989998877788466988898999999999999999998634
No 7
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=355.15 Aligned_cols=251 Identities=16% Similarity=0.191 Sum_probs=200.5
Q ss_pred CCCCHHHHHH-------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEEECCCCCCCCCEEEEE
Q ss_conf 8889455999-------99999999999199989999999999999999973-129982499000069888999648999
Q 002779 32 TAIGAEYWQR-------AEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTA 103 (882)
Q Consensus 32 ~~I~~e~w~~-------lee~i~eli~~I~PTeeE~~~R~~VI~~L~~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDIvI 103 (882)
.+++.+.... ++++|.+|+++++||++|.++|..++.+|+++|+. ||+|+|++|||+++||++|+||||||+
T Consensus 117 ~~~~~~~l~~~L~~a~sl~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl 196 (464)
T 3pq1_A 117 XXXSNKQLFELLCYAESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFL 196 (464)
T ss_dssp CC--CHHHHHHHTTSSSHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEE
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEE
T ss_conf 66899999999843421789999999986999999999999999999999987899879996877248889999957999
Q ss_pred ECCCCCC---------------------HH-HHHHHHHHHHHHHHCCCCCCCEEEEEEE-EEEEEEEEEEEC--CEEEEE
Q ss_conf 8599973---------------------68-9999999999874212233322588998-410337998458--868998
Q 002779 104 FGGLNVE---------------------EA-LANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQ--NIVVDI 158 (882)
Q Consensus 104 ~~~~~~~---------------------~~-ll~~I~~~L~k~~~n~~~ef~Vk~V~vI-~ARVPIIKf~~s--GI~VDI 158 (882)
..+.... +. ..+.+...+.+..++... ++.+|+.| +||||||||++. ||.|||
T Consensus 197 ~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~--~~~~v~~I~~ARVPIIKf~~~~tgi~~DI 274 (464)
T 3pq1_A 197 DLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGP--GCVGVQKILNARCPLVRFSHQASGFQCAL 274 (464)
T ss_dssp ECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSST--TEEEEEEECSSSSCEEEEEETTTCCEEEE
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCCEEEEEECCCCEEEEE
T ss_conf 6477555543235663134554124435677899999999999984389--97326885378987799998578838998
Q ss_pred EECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCC------
Q ss_conf 540588632079999999871798134789999999999961724856799-8869999999999986598998------
Q 002779 159 SFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGL-ISTYALETLVLYIFHLFHSSLN------ 231 (882)
Q Consensus 159 SfNn~~Gl~ts~lLe~i~~~i~kdp~fk~LvlLIK~Wak~e~rIl~a~~Gg-LSSYaL~LMVI~fLQ~~~p~l~------ 231 (882)
||||..|+.+++|+ ..|...+|++++|+++||+|++ ++++++++.|| ||||+|++|||+|||++.|.+.
T Consensus 275 S~nn~~gi~ns~ll---~~y~~~dprlr~Lvl~vK~Wak-~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l 350 (464)
T 3pq1_A 275 TTNNRIALTSSELL---YIYGALDSRVRALVFSVRCWAR-AHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSL 350 (464)
T ss_dssp ECSCTTHHHHHHHH---HHHHTTCHHHHHHHHHHHHHHH-HTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCS
T ss_pred ECCCCCHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 46887289999999---9998748218899999999999-8099865669976739999999999971599848976782
Q ss_pred --------------------------------CHH-HHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------------------------------839-99999997303666776258714785447898520016788899
Q 002779 232 --------------------------------GPL-AVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGG 278 (882)
Q Consensus 232 --------------------------------~pL-elL~~FFeyYs~FDw~k~~ISI~GPvplssL~~~~~e~pe~~g~ 278 (882)
..+ ++|++||+||++|||.+++|||
T Consensus 351 ~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIsI---------------------- 408 (464)
T 3pq1_A 351 KTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXXX---------------------- 408 (464)
T ss_dssp HHHHTTC---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCCC----------------------
T ss_pred CCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC----------------------
T ss_conf 3213755441224645664341766378888577999999999999848874333211----------------------
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 754487899999753167888988899998996649829999999813366977799999999999999997550
Q 002779 279 DLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILS 353 (882)
Q Consensus 279 ~~ll~kEfLk~~~~~fs~~~rg~e~~~~~f~~k~L~IeDPld~~nNLGRSVs~~n~~rIr~AF~~Aa~~L~~il~ 353 (882)
..|++++|+...+.+++.+++.|+..|..-..
T Consensus 409 -------------------------------------------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~~ 440 (464)
T 3pq1_A 409 -------------------------------------------XXXXXXXVSQSQLQKFVDLARESAWILQQEDT 440 (464)
T ss_dssp -------------------------------------------C-------CHHHHHHHHHHHHHHHHHHHCC--
T ss_pred -------------------------------------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf -------------------------------------------21112444899999999999999999740123
No 8
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=1.00 E-value=1 Score=344.51 Aligned_cols=272 Identities=21% Similarity=0.279 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH-----------------CCCCCEEEEEEECCCCCCCCCEE
Q ss_conf 9999999999999--1999899999999999999999731-----------------29982499000069888999648
Q 002779 40 QRAEEATQGIIAQ--VQPTVVSEERRKAVIDYVQRLIRNY-----------------LGCEVFPFGSVPLKTYLPDGDID 100 (882)
Q Consensus 40 ~~lee~i~eli~~--I~PTeeE~~~R~~VI~~L~~iI~~~-----------------p~a~V~~FGS~~tGL~LP~SDID 100 (882)
..+..++.+++.. +.||+||.++|++++..|+++|+.| .+++|++|||+++|+++|+||||
T Consensus 36 ~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v~~FGS~~lG~~~p~SDID 115 (514)
T 1q79_A 36 ALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADID 115 (514)
T ss_dssp HHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEHHHHHTCCCTTCCEE
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEEEECCCCCCCCCCEE
T ss_conf 87589999999974899998999999999999999999999988765078611113678359984022258879988644
Q ss_pred EEEECCCCCC-HHHHHHHHHHHHHHHHCCCCCCCEEEEEEE-EEEEEEEEEEECCEEEEEEECCCCCCC-----------
Q ss_conf 9998599973-689999999999874212233322588998-410337998458868998540588632-----------
Q 002779 101 LTAFGGLNVE-EALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQNIVVDISFNQLGGLS----------- 167 (882)
Q Consensus 101 IvI~~~~~~~-~~ll~~I~~~L~k~~~n~~~ef~Vk~V~vI-~ARVPIIKf~~sGI~VDISfNn~~Gl~----------- 167 (882)
+++..+.... ++++..+..+|++. ..+++++.| +|+||||||+.+||+|||+|++..+..
T Consensus 116 ~~~v~p~~~~~~dff~~l~~~L~~~-------~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~~~p~~l~l~~~~ 188 (514)
T 1q79_A 116 ALCVAPRHVDRSDFFTSFYDKLKLQ-------EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDS 188 (514)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTC-------TTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCSSBCTTCCTTCGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCC-------CCCCEEEEECCCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCHH
T ss_conf 8994477678899999999998528-------667469983578605799998985179997037765675224677536
Q ss_pred --------------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf --------------079999999871798134789999999999961724856799886999999999998659899883
Q 002779 168 --------------TLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGP 233 (882)
Q Consensus 168 --------------ts~lLe~i~~~i~kdp~fk~LvlLIK~Wak~e~rIl~a~~GgLSSYaL~LMVI~fLQ~~~p~l~~p 233 (882)
.....+.+.+++..++.||.++++||+||+ +++|++++.|+||||+|++||+++||+++.. .+
T Consensus 189 ~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak-~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~P~~--s~ 265 (514)
T 1q79_A 189 LLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAK-RHNIYSNILGFLGGVSWAMLVARTCQLYPNA--IA 265 (514)
T ss_dssp GGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHH-HTTCBCTTTTSBCHHHHHHHHHHHHHHSTTC--CH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CH
T ss_conf 54066666654300078999999975674778999999999999-7588743457763899999999999707899--88
Q ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC-CCCCCC
Q ss_conf 9999999973036667762587147854478985200167888997544878999997531678889888999-989966
Q 002779 234 LAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSR-SFPPKH 312 (882)
Q Consensus 234 LelL~~FFeyYs~FDw~k~~ISI~GPvplssL~~~~~e~pe~~g~~~ll~kEfLk~~~~~fs~~~rg~e~~~~-~f~~k~ 312 (882)
.++|.+||+||++|||.+- |.+..+ +. |. + ..+.|..+.. ..+...
T Consensus 266 ~~LL~~FF~~y~~~dw~~p-V~l~~~--------------~~-~~-l----------------~~~~w~p~~~~~dr~~~ 312 (514)
T 1q79_A 266 STLVHKFFLVFSKWEWPNP-VLLKQP--------------EE-CN-L----------------NLPVWDPRVNPSDRYHL 312 (514)
T ss_dssp HHHHHHHHHHHHSCCTTSC-BCSSCC--------------CC-CS-S----------------CCCCCCTTTCGGGGGCS
T ss_pred HHHHHHHHHHHHCCCCCCC-EEECCC--------------CC-CC-C----------------CCCCCCCCCCCCCCCCC
T ss_conf 9999999999843899997-573146--------------77-88-7----------------77655776687676662
Q ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 498299999998133669777999999999999999975509
Q 002779 313 LNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQ 354 (882)
Q Consensus 313 L~IeDPld~~nNLGRSVs~~n~~rIr~AF~~Aa~~L~~il~~ 354 (882)
|+|+||+++.+|++++|+..++.+|+.+|++|++.|..++..
T Consensus 313 m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~ 354 (514)
T 1q79_A 313 MPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLS 354 (514)
T ss_dssp SCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 238688987776666579889999999999999999987528
No 9
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=1.00 E-value=1 Score=343.09 Aligned_cols=271 Identities=20% Similarity=0.291 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHC-----------------CCCCEEEEEEECCCCCCCCCEE
Q ss_conf 9999999999999--19998999999999999999997312-----------------9982499000069888999648
Q 002779 40 QRAEEATQGIIAQ--VQPTVVSEERRKAVIDYVQRLIRNYL-----------------GCEVFPFGSVPLKTYLPDGDID 100 (882)
Q Consensus 40 ~~lee~i~eli~~--I~PTeeE~~~R~~VI~~L~~iI~~~p-----------------~a~V~~FGS~~tGL~LP~SDID 100 (882)
..+..++.+++.. +.||++|.++|++++.+|++++++|+ +++|++|||+++|+++|+||||
T Consensus 23 ~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~V~~FGSy~lG~~~p~SDID 102 (530)
T 2hhp_A 23 NKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDID 102 (530)
T ss_dssp HHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEEEEHHHHHTCCCTTCCEE
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCEE
T ss_conf 65369999999982899998999999999999999999999988775078722203568359994310358889998645
Q ss_pred EEEECCCCCC-HHHHHHHHHHHHHHHHCCCCCCCEEEEEEE-EEEEEEEEEEECCEEEEEEECCCCC--------CC---
Q ss_conf 9998599973-689999999999874212233322588998-4103379984588689985405886--------32---
Q 002779 101 LTAFGGLNVE-EALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQNIVVDISFNQLGG--------LS--- 167 (882)
Q Consensus 101 IvI~~~~~~~-~~ll~~I~~~L~k~~~n~~~ef~Vk~V~vI-~ARVPIIKf~~sGI~VDISfNn~~G--------l~--- 167 (882)
+++..+..+. ++++..+...|++ ...+++++.| +|+||||||+.+||.|||+|++..+ +.
T Consensus 103 ~~v~~p~~~~~~dff~~l~~~L~~-------~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~~ip~~l~l~~~~ 175 (530)
T 2hhp_A 103 TLVVVPKHVTREDFFTVFDSLLRE-------RKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKN 175 (530)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHT-------CTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSSSCBCTTCCSCCGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC-------CCCCCEEEEECCCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCHH
T ss_conf 899437768889999999999854-------8777269995588604799998997268998315655677334788535
Q ss_pred --------------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf --------------079999999871798134789999999999961724856799886999999999998659899883
Q 002779 168 --------------TLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGP 233 (882)
Q Consensus 168 --------------ts~lLe~i~~~i~kdp~fk~LvlLIK~Wak~e~rIl~a~~GgLSSYaL~LMVI~fLQ~~~p~l~~p 233 (882)
.....+.+.+++...+.||.++++||+||+ ++++++++.|+||||+|++||+++||+++.. .+
T Consensus 176 ~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak-~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P~~--s~ 252 (530)
T 2hhp_A 176 LLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQ-RRAVYANIFGFPGGVAWAMLVARICQLYPNA--CS 252 (530)
T ss_dssp GGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-HTTCCCGGGTSCCHHHHHHHHHHHHHHSTTC--CH
T ss_pred HHHCCCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--CH
T ss_conf 54256655532010078999999975673778999999999999-7588743436774899999999998237899--98
Q ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC-CCCCCC
Q ss_conf 9999999973036667762587147854478985200167888997544878999997531678889888999-989966
Q 002779 234 LAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSR-SFPPKH 312 (882)
Q Consensus 234 LelL~~FFeyYs~FDw~k~~ISI~GPvplssL~~~~~e~pe~~g~~~ll~kEfLk~~~~~fs~~~rg~e~~~~-~f~~k~ 312 (882)
.++|..||+||++|||.+ .|.+... + .|. +. .+.|..+.. ......
T Consensus 253 ~~LL~~FF~~y~~~dw~~-pV~l~~~--------------~-~g~-~~----------------~~~w~p~~~~~d~~~~ 299 (530)
T 2hhp_A 253 AVILNRFFIILSEWNWPQ-PVILKPI--------------E-DGP-LQ----------------VRVWNPKIYAQDRSHR 299 (530)
T ss_dssp HHHHHHHHHHHHHCCTTS-CEESSCC--------------C-CCS-SC----------------SCCCCTTTCHHHHTCS
T ss_pred HHHHHHHHHHHHCCCCCC-CEEECCC--------------C-CCC-CC----------------CCCCCCCCCCCCCCCC
T ss_conf 999999999983189999-6474036--------------7-787-56----------------5555765577777664
Q ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 49829999999813366977799999999999999997550
Q 002779 313 LNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILS 353 (882)
Q Consensus 313 L~IeDPld~~nNLGRSVs~~n~~rIr~AF~~Aa~~L~~il~ 353 (882)
|+|+||+++.+|++++|+..++.+|+.+|++|++.|..++.
T Consensus 300 m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~ 340 (530)
T 2hhp_A 300 MPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFS 340 (530)
T ss_dssp SCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 35878899777567648988999999999999999998753
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=1.00 E-value=1 Score=137.17 Aligned_cols=234 Identities=17% Similarity=0.196 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC-CCCEEEEEECCCCCCHHHHHHH-HH
Q ss_conf 999999999991999899999999999999999731299824990000698889-9964899985999736899999-99
Q 002779 42 AEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLP-DGDIDLTAFGGLNVEEALANDV-CS 119 (882)
Q Consensus 42 lee~i~eli~~I~PTeeE~~~R~~VI~~L~~iI~~~p~a~V~~FGS~~tGL~LP-~SDIDIvI~~~~~~~~~ll~~I-~~ 119 (882)
+++.+++|++.|.|+++|.+.-..+++.|...|+. .++++.+.||++.||+|+ +|||||++..+......-+... ..
T Consensus 3 ~~~~~~~~l~~i~P~~~E~~~~~~~~~~I~~~L~~-~~~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~~e~l~~~~l~ 81 (437)
T 1r89_A 3 VEEILEKALELVIPDEEEVRKGREAEEELRRRLDE-LGVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKEELRERGLE 81 (437)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH-HTCCEEEEHHHHHTCCCTTCCEEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 79999999976197989999999999999999983-78708981343589737999870299993899888999887899
Q ss_pred HHHHHHHCCCCCCCEEEEEEEEEEEEEEEEEECCEEEEEEE--CCCC--CCCHH-HHHHHHHHHHCC-CCHHHHHHHHHH
Q ss_conf 99987421223332258899841033799845886899854--0588--63207-999999987179-813478999999
Q 002779 120 VLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISF--NQLG--GLSTL-CFLEQVDRLIGK-DHLFKRSIILIK 193 (882)
Q Consensus 120 ~L~k~~~n~~~ef~Vk~V~vI~ARVPIIKf~~sGI~VDISf--Nn~~--Gl~ts-~lLe~i~~~i~k-dp~fk~LvlLIK 193 (882)
.++.+ ... ...-.|..|-|.....|+++||.- .... .+.++ +.......|+.. -.-++.+|+++|
T Consensus 82 ~~~e~----l~~-----~~~~ya~hpyV~~~f~g~~vDVVP~y~v~~g~~~~tavDrtp~H~~fv~~r~~~~~~~VRLLK 152 (437)
T 1r89_A 82 IGKAV----LDS-----YEIRYAEHPYVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGKENEVRLLK 152 (437)
T ss_dssp HHHHH----SSS-----EEEEESSSEEEEEEETTEEEEEEEEECCSSSSCCCSHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred HHHHH----HHH-----HHHHCCCCCEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999----987-----640006886699986665899997787568766655235868999999860143245879999
Q ss_pred HHHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 99999617248--567998869999999999986598998839-999999973036667762587147854478985200
Q 002779 194 AWCYYESRILG--AHHGLISTYALETLVLYIFHLFHSSLNGPL-AVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVV 270 (882)
Q Consensus 194 ~Wak~e~rIl~--a~~GgLSSYaL~LMVI~fLQ~~~p~l~~pL-elL~~FFeyYs~FDw~k~~ISI~GPvplssL~~~~~ 270 (882)
+|++ ..++.+ ...+|+|||.+.||+++| +.. .+|..+. +|.. ++.|.
T Consensus 153 ~f~k-~~~~ygse~k~~gfSsYllELLv~~y---------G~f~~vl~~~~------~w~~-~~~Id------------- 202 (437)
T 1r89_A 153 GFLK-ANGIYGAEYKVRGFSGYLCELLIVFY---------GSFLETVKNAR------RWTR-RTVID------------- 202 (437)
T ss_dssp HHHH-HTTCBCCSTTTCCBCHHHHHHHHHHH---------SSHHHHHHHHT------TCCT-TEEEE-------------
T ss_pred HHHH-HCCCCCCCCCCCCCCHHHHHHHHHHH---------CCHHHHHHHHH------HHCC-CEEEE-------------
T ss_conf 9998-57967875527889889999999998---------67799999999------7079-71895-------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 16788899754487899999753167888988899998996649829999999813366977799999999999999997
Q 002779 271 ETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGH 350 (882)
Q Consensus 271 e~pe~~g~~~ll~kEfLk~~~~~fs~~~rg~e~~~~~f~~k~L~IeDPld~~nNLGRSVs~~n~~rIr~AF~~Aa~~L~~ 350 (882)
+ + + + ...| ..+|.|.||.+++||+|++++..++. .|..+++.+..
T Consensus 203 ---------~----~--------~-----~----~~~~-~~PlvViDPvDp~rNVAa~~s~~~~~----~~~~~a~~~l~ 247 (437)
T 1r89_A 203 ---------V----A--------K-----G----EVRK-GEEFFVVDPVDEKRNVAANLSLDNLA----RFVHLCREFME 247 (437)
T ss_dssp ---------G----G--------G-----T----EEEE-CSSCEEEETTEEEEETTTTCCHHHHH----HHHHHHHHHHH
T ss_pred ---------C----C--------C-----C----CCCC-CCCEEEECCCCCCCCHHHCCCHHHHH----HHHHHHHHHHH
T ss_conf ---------1----7--------7-----7----5357-89979879989987420007899999----99999999996
Done!