BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002780
(882 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 10/121 (8%)
Query: 4 AAVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADARAAVXXXXXXXXX 63
AA++ I LG LL E+ KL GV+K ++ + E+ES + L +
Sbjct: 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAAL------IKIGEVPREQLD 54
Query: 64 SV-RTWVKQLRDEAYRIEDVIDEYTLMVAKLP---HGRGLVGVLRRISRFIKKLKLRRGV 119
S + W ++R+ +Y IEDV+D++ + V + + G+ +R + +KK+K + G+
Sbjct: 55 SQDKLWADEVRELSYVIEDVVDKFLVQVDGIKSDDNNNKFKGLXKRTTELLKKVKHKHGI 114
Query: 120 A 120
A
Sbjct: 115 A 115
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 84/216 (38%), Gaps = 28/216 (12%)
Query: 528 VLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPV 587
L+L P+ P+ L +L + ++ + +P + LETL + +R LP
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPA 144
Query: 588 EIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLK-EL 646
I +L +LR L + + + E A G L NLQ L + + L +
Sbjct: 145 SIASLNRLRELSIRA--CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI 202
Query: 647 MKLRQLRMLSIRPQNGNGKDLCALIXXXXXXXXXXVEMTSKEEMLDLQSLSS----PPQY 702
L+ L+ L IR L AL + K E LDL+ ++ PP +
Sbjct: 203 ANLQNLKSLKIR-----NSPLSAL--------GPAIHHLPKLEELDLRGCTALRNYPPIF 249
Query: 703 LQRLHLTGNMKKLPDWIFK-LKNLIRLGLDLSGLTE 737
G L I K NL+ L LD+ LT+
Sbjct: 250 -------GGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 518 ASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNM 577
A I N ++VLDL + LP +G+ F L Y + V +P GNL +L+ L +
Sbjct: 264 AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGV 323
Query: 578 KNTLVRELPVEIRNLKKLRYLMVY 601
+ + + ++I K + L+ Y
Sbjct: 324 EGNPLEKQFLKILTEKSVTGLIFY 347
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 544 GNLFNLHYLS---LRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMV 600
N+F +L+ L + +P I NL +L L++ + + LP E+ + +L+Y
Sbjct: 241 ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF 300
Query: 601 YQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSI 635
+ + V + FG+L NLQ L +
Sbjct: 301 F------------DNMVTTLPWEFGNLCNLQFLGV 323
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 99/238 (41%), Gaps = 55/238 (23%)
Query: 528 VLDLEDAPVDYLPEG-VGNLFNLHYLSLRNTKV-KIIPTSIGNLLSLETLNMKNTLVREL 585
+LDL++ + + +G NL NLH L L N K+ KI P + L+ LE L + ++EL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 586 PVEI-RNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLK 644
P ++ + L++LR E + KVR L ++ ++E + LK
Sbjct: 116 PEKMPKTLQELR---------------VHENEITKVRKSV--FNGLNQMIVVELGTNPLK 158
Query: 645 ----ELMKLRQLRMLS-IRPQNGNGKDLCALIXXXXXXXXXXVEMTSKEEMLDLQSLSSP 699
E + ++ LS IR + N +T+ + L
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTN--------------------ITTIPQGL-------- 190
Query: 700 PQYLQRLHLTGN-MKKLPDWIFK-LKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFT 755
P L LHL GN + K+ K L NL +LGL + ++ L P+L EL
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 99/238 (41%), Gaps = 55/238 (23%)
Query: 528 VLDLEDAPVDYLPEG-VGNLFNLHYLSLRNTKV-KIIPTSIGNLLSLETLNMKNTLVREL 585
+LDL++ + + +G NL NLH L L N K+ KI P + L+ LE L + ++EL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 586 PVEI-RNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLK 644
P ++ + L++LR E + KVR L ++ ++E + LK
Sbjct: 116 PEKMPKTLQELR---------------VHENEITKVRKSV--FNGLNQMIVVELGTNPLK 158
Query: 645 ----ELMKLRQLRMLS-IRPQNGNGKDLCALIXXXXXXXXXXVEMTSKEEMLDLQSLSSP 699
E + ++ LS IR + N +T+ + L
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTN--------------------ITTIPQGL-------- 190
Query: 700 PQYLQRLHLTGN-MKKLPDWIFK-LKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFT 755
P L LHL GN + K+ K L NL +LGL + ++ L P+L EL
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 528 VLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKI-IPTSIGNLLSLETLNM-KNTLVREL 585
+LD D +P G+ N NL+++SL N ++ IP IG L +L L + N+ +
Sbjct: 469 ILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 586 PVEIRNLKKLRYL 598
P E+ + + L +L
Sbjct: 528 PAELGDCRSLIWL 540
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 528 VLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKI-IPTSIGNLLSLETLNM-KNTLVREL 585
+LD D +P G+ N NL+++SL N ++ IP IG L +L L + N+ +
Sbjct: 472 ILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 586 PVEIRNLKKLRYL 598
P E+ + + L +L
Sbjct: 531 PAELGDCRSLIWL 543
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 34/157 (21%)
Query: 520 IANFKLIKVLDLEDAPVDYL-PEGVGNLFNLHYLSLRNTKVKIIP----TSIGNLLSLET 574
A+F ++ L+L + V + P NLFNL L LR+ ++K+IP T + NL L+
Sbjct: 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111
Query: 575 LNMKNTLVRELPVEIRNLKKLRYL------MVYQYHYTSGSSITEEAAVAKVRGGFGSLT 628
+N +V L ++L L+ L +VY H + G SL
Sbjct: 112 --SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH--------------RAFSGLNSLE 155
Query: 629 --NLQKLSIIEADSQVLKEL-----MKLRQLRMLSIR 658
L+K ++ ++ L L ++LR L + +IR
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 487 IDDGALESIKESKVRSVFLFN--VDKLPDSFMNASIANFKLIKVLDL-EDAPVDYLPEGV 543
I GA E + SK+R ++L N ++ +P N + +L DL E ++Y+ EG
Sbjct: 138 IPSGAFEYL--SKLRELWLRNNPIESIPSYAFNRVPSLMRL----DLGELKKLEYISEGA 191
Query: 544 -GNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVREL-PVEIRNLKKLRYLMV 600
LFNL YL+L +K +P ++ L+ LE L M E+ P L L+ L V
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 107/274 (39%), Gaps = 54/274 (19%)
Query: 198 PVEIHDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRH 257
P+ I + ++ I LR H + +++ DDVW D W V A + +C +I++TTR
Sbjct: 217 PLNIEEAKDRLRILMLRKHPRS---LLILDDVW--DSW--VLKAF--DSQC-QILLTTRD 266
Query: 258 MNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSSG--------GCCPSELKELSQ 309
+V V P E+ LG G ++L E +
Sbjct: 267 KSVTDSVMGPKYV--------VPVESS-------LGKEKGLEILSLFVNMKKADLPEQAH 311
Query: 310 DILAKCGGLPLAIVAVGGLLSS-KNRVVSEWKKL----FDRLGSILGSDPHLKDCNRVLS 364
I+ +C G PL + +G LL NR K+L F R+ D D +S
Sbjct: 312 SIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALD--EAMS 369
Query: 365 EGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNEL 424
L +K + Q+ KV L LW E +E+V E+ L E
Sbjct: 370 ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----------TEEV-EDILQEF 418
Query: 425 IDRSLVQVSKRDISGRARICQVHDLMHQIIIRKT 458
+++SL+ D +G++ +HDL + K
Sbjct: 419 VNKSLLFC---DRNGKSFRYYLHDLQVDFLTEKN 449
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 426 DRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGFSRVMNGEDLSRSSKTRRITVQR 485
+R+ Q S D + ++C LM + T + R+ G D+ + ++T+
Sbjct: 369 ERNTDQASMPDNTAAQKVCH---LMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQA--- 422
Query: 486 SIDDGALESIKESKVRSVF---LFNVDKLPD-------SFMNA-SIANFKLIKVLDLEDA 534
D A+E++ ++K +F L V+K D SF+ IA F++ ++ E
Sbjct: 423 ---DFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQL 479
Query: 535 PVDYLPEGVGNLFN 548
++Y E + LFN
Sbjct: 480 CINYTNEKLQQLFN 493
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 17/122 (13%)
Query: 258 MNVAKYCKSSSSVHVHEL------ETLPPNE--ARKLFCRKVL---GPSSGGCCPSELKE 306
M V + +S SS V L E PP K+F K L P++ G + L E
Sbjct: 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAG--KTLLAE 58
Query: 307 LSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGS----DPHLKDCNRV 362
++ A GG L +V + L K +W+K+ R+G G D HL DC+ +
Sbjct: 59 MAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDII 118
Query: 363 LS 364
++
Sbjct: 119 VT 120
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 691 LDLQS--LSSPPQY-------LQRLHLTGN-MKKLPDWIFK-LKNLIRLGLDLSGLTEEP 739
LDLQS LSS P L+ L+L N ++ LP IFK LKNL L + + L P
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 740 IRVLQTLPNLLELRF 754
I V L NL ELR
Sbjct: 102 IGVFDQLVNLAELRL 116
>pdb|1QYS|A Chain A, Crystal Structure Of Top7: A Computationally Designed
Protein With A Novel Fold
Length = 106
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 407 YSKRPTSEQVAEEYLNELIDRSLVQVSKR-DISGRARICQVHDLMHQIIIRKTEELGFSR 465
Y+ T+E ++ LNEL D Q +KR IS AR + + I+I+ ELG++
Sbjct: 19 YTYTVTTESELQKVLNELXDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYN- 77
Query: 466 VMNGEDLSRSSKTRRITVQRSIDDGALE 493
D++ + +TV+ ++ G+LE
Sbjct: 78 -----DINVTFDGDTVTVEGQLEGGSLE 100
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 426 DRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGFSRVMNGEDLSRSSKTRRITVQR 485
+R+ Q S D + ++C LM + T + R+ G D+ + ++T+
Sbjct: 369 ERNTDQASMPDNTAAQKVCH---LMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQA--- 422
Query: 486 SIDDGALESIKESKVRSVF---LFNVDKLPD-------SFMNA-SIANFKLIKVLDLEDA 534
D A+E++ ++K +F L V+K D SF+ IA F++ ++ E
Sbjct: 423 ---DFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQL 479
Query: 535 PVDYLPEGVGNLFN 548
++Y E + LFN
Sbjct: 480 CINYTNEKLQQLFN 493
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 426 DRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGFSRVMNGEDLSRSSKTRRITVQR 485
+R+ Q S D + ++C LM + T + R+ G D+ + ++T+
Sbjct: 369 ERNTDQASMPDNTAAQKVCH---LMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQA--- 422
Query: 486 SIDDGALESIKESKVRSVF---LFNVDKLPD-------SFMNA-SIANFKLIKVLDLEDA 534
D A+E++ ++K +F L V+K D SF+ IA F++ ++ E
Sbjct: 423 ---DFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQL 479
Query: 535 PVDYLPEGVGNLFN 548
++Y E + LFN
Sbjct: 480 CINYTNEKLQQLFN 493
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 426 DRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGFSRVMNGEDLSRSSKTRRITVQR 485
+R+ Q S D + ++C LM + T + R+ G D+ + ++T+
Sbjct: 369 ERNTDQASMPDNTAAQKVCH---LMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQA--- 422
Query: 486 SIDDGALESIKESKVRSVF---LFNVDKLPD-------SFMNA-SIANFKLIKVLDLEDA 534
D A+E++ ++K +F L V+K D SF+ IA F++ ++ E
Sbjct: 423 ---DFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQL 479
Query: 535 PVDYLPEGVGNLFN 548
++Y E + LFN
Sbjct: 480 CINYTNEKLQQLFN 493
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 426 DRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGFSRVMNGEDLSRSSKTRRITVQR 485
+R+ Q S D + ++C LM + T + R+ G D+ + ++T+
Sbjct: 369 ERNTDQASMPDNTAAQKVCH---LMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQA--- 422
Query: 486 SIDDGALESIKESKVRSVF---LFNVDKLPD-------SFMNA-SIANFKLIKVLDLEDA 534
D A+E++ ++K +F L V+K D SF+ IA F++ ++ E
Sbjct: 423 ---DFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQL 479
Query: 535 PVDYLPEGVGNLFN 548
++Y E + LFN
Sbjct: 480 CINYTNEKLQQLFN 493
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 537 DYLPEGVGNLFNLHYLSLRNTKV-KIIPTSIGNLLSLETLNMKNTLVRELP 586
++LP+ L NL +L L ++ ++ PT+ +L SL+ LNM + ++ +P
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
>pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex
Length = 828
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Query: 105 RISRFIKKLKLRRGVATEIQDIKSALADIKRRGESYRFRSIDEPSSSGTRNVIPHDSRVR 164
R+S ++KL ++ G A E + A+A+ +R+ ES R+ D + + +D R R
Sbjct: 594 RVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVES---RNFDIRKQLLEYDDVANDQR-R 649
Query: 165 SFFVEDDEVVGIESIKDKLIDLMEFHRVTNEPAPVEIHDMEEMELITALRDHLKDKSYMV 224
+ + + +E++ + + + + + E A + +EEM I L++ LK+
Sbjct: 650 AIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKND---- 705
Query: 225 VFDDVWKIDFWGDVEHALLDNKKCSRIIVTT 255
FD I W D E L + RI+ +
Sbjct: 706 -FDLDLPIAEWLDKEPELHEETLRERILAQS 735
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 467 MNGEDLSRSSKTRRITVQRSI---------DDGALESIKESKVRSVF---LFNVDKLPD- 513
+N D +RS T RI V R + D A+E++ ++K +F L V+K D
Sbjct: 392 INVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDK 451
Query: 514 ------SFMNA-SIANFKLIKVLDLEDAPVDYLPEGVGNLFN 548
SF+ IA F++ ++ E ++Y E + LFN
Sbjct: 452 TKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFN 493
>pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSF|B Chain B, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSH|A Chain A, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSH|B Chain B, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSI|A Chain A, Complex Seca:adp From Escherichia Coli
pdb|2FSI|B Chain B, Complex Seca:adp From Escherichia Coli
Length = 853
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Query: 105 RISRFIKKLKLRRGVATEIQDIKSALADIKRRGESYRFRSIDEPSSSGTRNVIPHDSRVR 164
R+S ++KL ++ G A E + A+A+ +R+ ES R+ D + + +D R R
Sbjct: 594 RVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVES---RNFDIRKQLLEYDDVANDQR-R 649
Query: 165 SFFVEDDEVVGIESIKDKLIDLMEFHRVTNEPAPVEIHDMEEMELITALRDHLKDKSYMV 224
+ + + +E++ + + + + + E A + +EEM I L++ LK+
Sbjct: 650 AIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKND---- 705
Query: 225 VFDDVWKIDFWGDVEHALLDNKKCSRIIVTT 255
FD I W D E L + RI+ +
Sbjct: 706 -FDLDLPIAEWLDKEPELHEETLRERILAQS 735
>pdb|1VT4|I Chain I, Structure Of The Drosophila Apoptosome
pdb|1VT4|J Chain J, Structure Of The Drosophila Apoptosome
pdb|1VT4|K Chain K, Structure Of The Drosophila Apoptosome
pdb|1VT4|L Chain L, Structure Of The Drosophila Apoptosome
pdb|1VT4|M Chain M, Structure Of The Drosophila Apoptosome
pdb|1VT4|N Chain N, Structure Of The Drosophila Apoptosome
pdb|1VT4|O Chain O, Structure Of The Drosophila Apoptosome
pdb|1VT4|P Chain P, Structure Of The Drosophila Apoptosome
pdb|3IZ8|A Chain A, Structure Of The Drosophila Apoptosome
pdb|3IZ8|B Chain B, Structure Of The Drosophila Apoptosome
pdb|3IZ8|C Chain C, Structure Of The Drosophila Apoptosome
pdb|3IZ8|D Chain D, Structure Of The Drosophila Apoptosome
pdb|3IZ8|E Chain E, Structure Of The Drosophila Apoptosome
pdb|3IZ8|F Chain F, Structure Of The Drosophila Apoptosome
pdb|3IZ8|G Chain G, Structure Of The Drosophila Apoptosome
pdb|3IZ8|H Chain H, Structure Of The Drosophila Apoptosome
Length = 1221
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 36/167 (21%)
Query: 213 LRDHLKDKSY---MVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSS 269
LR LK K Y ++V +V W N C +I++TTR V + ++++
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAF------NLSC-KILLTTRFKQVTDFLSAATT 286
Query: 270 VHV---HELETLPPNEARKLF-----CRKVLGPSSG-GCCPSELKELSQDI---LA---- 313
H+ H TL P+E + L CR P P L +++ I LA
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 314 ----KCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHL 356
C L I + +L +E++K+FDRL S+ H+
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEP-----AEYRKMFDRL-SVFPPSAHI 387
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 30/212 (14%)
Query: 437 ISGRARICQVHDLMHQIIIRKTEELGFSRVMNGEDLSRSSKTRRITVQRSIDDGALESIK 496
IS R+ +H+ +QI I K R + LSR+ R+I+ GA +
Sbjct: 62 ISTNTRLLNLHE--NQIQIIKVNSFKHLRHLEILQLSRNHI-------RTIEIGAFNGLA 112
Query: 497 ESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLPEGVGN-LFNLHYLSLR 555
+F + +P N + +K L L + P++ +P N + +L L L
Sbjct: 113 NLNTLELFDNRLTTIP----NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168
Query: 556 NTK--VKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYTSGSSITE 613
K I + L +L LN+ +RE+P + L KL L + H
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNH--------- 218
Query: 614 EAAVAKVR-GGFGSLTNLQKLSIIEADSQVLK 644
++ +R G F L +LQKL +I++ QV++
Sbjct: 219 ---LSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247
>pdb|3N91|A Chain A, Crystal Structure Of A Structural Genomics, Unknown
Function (Bacova_03430) From Bacteroides Ovatus At 2.40
A Resolution
Length = 323
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 9/54 (16%)
Query: 136 RGESYRFRSIDEPSSSGT-RNVIPHDSRVRSFFVEDDEVVGI--ESIKDKLIDL 186
GE R R ID + +GT +++I H+ FVE+DEVV I +S KD L+ L
Sbjct: 179 HGEYLR-RGIDHATVAGTSKDIIRHEQ-----FVENDEVVNISTKSXKDNLLTL 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,303,917
Number of Sequences: 62578
Number of extensions: 979299
Number of successful extensions: 2251
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2227
Number of HSP's gapped (non-prelim): 49
length of query: 882
length of database: 14,973,337
effective HSP length: 107
effective length of query: 775
effective length of database: 8,277,491
effective search space: 6415055525
effective search space used: 6415055525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)