Query 002780
Match_columns 882
No_of_seqs 615 out of 5322
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 06:58:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.6E-81 3.6E-86 733.6 38.8 777 2-813 1-865 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.7E-57 3.6E-62 563.3 38.9 589 211-873 287-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.3E-32 1.2E-36 288.4 12.0 202 202-408 83-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 3.1E-29 6.7E-34 312.3 16.6 385 477-877 119-519 (968)
5 PLN00113 leucine-rich repeat r 100.0 4.2E-29 9.1E-34 311.1 16.9 369 477-876 70-471 (968)
6 KOG0444 Cytoskeletal regulator 99.9 2.4E-26 5.3E-31 242.4 -10.3 336 516-871 24-376 (1255)
7 KOG4194 Membrane glycoprotein 99.9 1.5E-24 3.2E-29 228.1 0.9 353 496-879 76-461 (873)
8 KOG0444 Cytoskeletal regulator 99.9 2.2E-25 4.8E-30 235.2 -5.3 296 494-809 74-376 (1255)
9 KOG4194 Membrane glycoprotein 99.9 1.7E-23 3.7E-28 220.1 4.3 313 497-827 124-447 (873)
10 PLN03210 Resistant to P. syrin 99.9 4.5E-21 9.8E-26 238.8 21.2 306 498-830 589-904 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 3.9E-24 8.4E-29 215.6 -11.0 321 518-876 131-545 (565)
12 KOG0472 Leucine-rich repeat pr 99.8 2E-24 4.2E-29 217.7 -15.9 342 518-880 108-526 (565)
13 KOG0618 Serine/threonine phosp 99.8 5.1E-22 1.1E-26 220.4 -0.4 339 522-873 43-468 (1081)
14 KOG0618 Serine/threonine phosp 99.7 1E-20 2.2E-25 210.2 -8.7 218 629-868 242-487 (1081)
15 PRK15387 E3 ubiquitin-protein 99.7 2.6E-17 5.7E-22 189.9 12.6 74 525-606 202-275 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 1.9E-15 4.2E-20 174.6 11.4 239 525-812 223-462 (788)
17 PRK15370 E3 ubiquitin-protein 99.6 6.1E-15 1.3E-19 171.8 8.9 242 526-830 180-426 (754)
18 PRK15370 E3 ubiquitin-protein 99.5 2.3E-14 5.1E-19 166.9 5.0 75 525-605 200-274 (754)
19 KOG0617 Ras suppressor protein 99.4 3.9E-15 8.4E-20 133.6 -4.6 150 524-685 33-183 (264)
20 KOG0617 Ras suppressor protein 99.4 3.6E-15 7.9E-20 133.8 -5.3 154 496-664 31-187 (264)
21 cd00116 LRR_RI Leucine-rich re 99.4 5.1E-14 1.1E-18 152.7 0.7 109 722-830 192-318 (319)
22 KOG4237 Extracellular matrix p 99.4 9.8E-15 2.1E-19 148.1 -5.4 254 513-782 80-357 (498)
23 KOG4237 Extracellular matrix p 99.3 5.7E-14 1.2E-18 142.7 -3.2 278 526-830 69-357 (498)
24 cd00116 LRR_RI Leucine-rich re 99.3 1.7E-13 3.6E-18 148.7 -0.9 252 529-830 3-289 (319)
25 KOG4658 Apoptotic ATPase [Sign 99.2 5.8E-12 1.3E-16 149.4 5.6 269 494-803 519-802 (889)
26 KOG2120 SCF ubiquitin ligase, 99.0 2.4E-11 5.1E-16 119.3 -4.8 157 625-781 207-373 (419)
27 PF14580 LRR_9: Leucine-rich r 98.9 1.7E-09 3.8E-14 102.8 4.1 84 521-606 16-101 (175)
28 KOG0532 Leucine-rich repeat (L 98.9 1.3E-10 2.9E-15 123.9 -3.8 156 517-688 91-247 (722)
29 COG4886 Leucine-rich repeat (L 98.8 2.1E-09 4.5E-14 120.1 4.6 107 520-638 112-219 (394)
30 KOG3207 Beta-tubulin folding c 98.8 8E-10 1.7E-14 114.6 0.9 164 539-736 113-284 (505)
31 KOG0532 Leucine-rich repeat (L 98.7 4.8E-10 1E-14 119.7 -4.1 192 523-757 74-270 (722)
32 KOG1909 Ran GTPase-activating 98.7 2.3E-09 5E-14 108.3 0.5 141 647-807 154-310 (382)
33 KOG3207 Beta-tubulin folding c 98.7 2.6E-09 5.7E-14 110.8 -0.3 63 625-687 118-184 (505)
34 PF14580 LRR_9: Leucine-rich r 98.7 1.6E-08 3.4E-13 96.4 4.0 130 496-638 17-150 (175)
35 KOG1259 Nischarin, modulator o 98.6 4.1E-09 8.9E-14 103.7 -0.7 104 673-782 305-410 (490)
36 KOG1909 Ran GTPase-activating 98.6 3.3E-09 7.1E-14 107.3 -2.5 242 566-830 26-309 (382)
37 COG4886 Leucine-rich repeat (L 98.6 2.8E-08 6E-13 111.0 3.3 197 528-765 97-295 (394)
38 KOG1259 Nischarin, modulator o 98.5 1.7E-08 3.7E-13 99.5 0.1 127 548-687 285-411 (490)
39 KOG4341 F-box protein containi 98.4 7.8E-09 1.7E-13 106.8 -4.7 278 525-833 139-440 (483)
40 KOG0531 Protein phosphatase 1, 98.4 2.6E-08 5.5E-13 111.4 -1.6 193 524-735 72-267 (414)
41 PLN03150 hypothetical protein; 98.3 5.8E-07 1.3E-11 105.2 6.8 82 525-606 419-503 (623)
42 PF13855 LRR_8: Leucine rich r 98.3 5E-07 1.1E-11 70.5 3.7 56 525-580 2-59 (61)
43 PF13855 LRR_8: Leucine rich r 98.3 6.7E-07 1.4E-11 69.7 3.6 59 547-605 1-61 (61)
44 KOG4341 F-box protein containi 98.3 1.9E-08 4E-13 104.1 -6.9 253 547-831 138-413 (483)
45 KOG0531 Protein phosphatase 1, 98.2 1.4E-07 3E-12 105.5 -1.2 222 519-760 90-318 (414)
46 KOG2120 SCF ubiquitin ligase, 98.2 1.5E-07 3.2E-12 93.1 -1.6 154 525-687 186-350 (419)
47 KOG2982 Uncharacterized conser 98.2 8.1E-07 1.8E-11 88.0 2.0 85 519-606 66-159 (418)
48 PLN03150 hypothetical protein; 98.1 2E-06 4.3E-11 100.8 5.5 111 702-812 419-532 (623)
49 KOG1859 Leucine-rich repeat pr 98.0 2.5E-07 5.5E-12 101.9 -5.0 53 552-605 169-221 (1096)
50 PF12799 LRR_4: Leucine Rich r 98.0 6.1E-06 1.3E-10 58.7 3.1 39 548-586 2-40 (44)
51 PF12799 LRR_4: Leucine Rich r 98.0 8.4E-06 1.8E-10 58.1 3.8 41 524-564 1-41 (44)
52 PRK04841 transcriptional regul 98.0 0.00014 3E-09 90.9 17.2 215 208-459 107-333 (903)
53 KOG3665 ZYG-1-like serine/thre 97.9 4.8E-06 1E-10 97.1 2.0 81 521-602 145-229 (699)
54 KOG2982 Uncharacterized conser 97.8 2.4E-06 5.2E-11 84.7 -2.1 221 548-801 46-285 (418)
55 KOG3665 ZYG-1-like serine/thre 97.8 7.8E-06 1.7E-10 95.3 0.9 147 524-681 122-281 (699)
56 COG5238 RNA1 Ran GTPase-activa 97.7 2.5E-06 5.4E-11 83.5 -3.5 249 520-807 26-315 (388)
57 PRK15386 type III secretion pr 97.6 3.6E-05 7.8E-10 82.5 3.8 159 520-712 48-211 (426)
58 KOG4579 Leucine-rich repeat (L 97.6 4.9E-06 1.1E-10 73.0 -2.6 78 528-605 31-112 (177)
59 PRK15386 type III secretion pr 97.6 6.3E-05 1.4E-09 80.7 4.9 68 702-780 53-121 (426)
60 KOG1859 Leucine-rich repeat pr 97.5 3.9E-06 8.5E-11 92.8 -5.2 109 517-638 180-289 (1096)
61 KOG4579 Leucine-rich repeat (L 97.3 3.7E-05 8E-10 67.7 -0.8 85 520-604 49-134 (177)
62 KOG1644 U2-associated snRNP A' 97.3 0.00028 6E-09 66.8 4.6 80 526-606 44-126 (233)
63 KOG1947 Leucine rich repeat pr 97.0 7.6E-05 1.7E-09 86.0 -2.5 39 649-687 268-307 (482)
64 PF12061 DUF3542: Protein of u 96.9 0.0033 7.1E-08 63.2 7.6 78 4-88 296-374 (402)
65 KOG1644 U2-associated snRNP A' 96.6 0.003 6.4E-08 60.0 4.9 102 725-829 44-150 (233)
66 PRK00411 cdc6 cell division co 96.5 0.43 9.3E-06 53.2 22.8 225 205-447 121-374 (394)
67 COG5238 RNA1 Ran GTPase-activa 96.4 0.0018 3.8E-08 64.1 2.0 159 520-685 54-252 (388)
68 TIGR03015 pepcterm_ATPase puta 96.3 0.11 2.4E-06 54.5 15.6 110 218-329 121-242 (269)
69 KOG1947 Leucine rich repeat pr 96.1 0.0012 2.6E-08 76.0 -1.0 111 627-749 268-389 (482)
70 KOG2739 Leucine-rich acidic nu 96.1 0.0033 7.3E-08 62.3 2.2 81 520-601 61-151 (260)
71 KOG2739 Leucine-rich acidic nu 96.0 0.0036 7.7E-08 62.1 2.3 38 545-582 63-103 (260)
72 KOG2123 Uncharacterized conser 96.0 0.00061 1.3E-08 67.5 -3.1 82 523-606 18-101 (388)
73 PRK06893 DNA replication initi 95.9 0.019 4.1E-07 58.4 7.1 93 222-322 93-200 (229)
74 KOG2123 Uncharacterized conser 95.9 0.0011 2.3E-08 65.8 -2.1 100 545-656 17-123 (388)
75 PF05729 NACHT: NACHT domain 95.7 0.024 5.3E-07 54.3 6.7 73 218-290 79-162 (166)
76 PF00560 LRR_1: Leucine Rich R 95.7 0.0044 9.6E-08 36.6 0.8 18 549-566 2-19 (22)
77 PF05659 RPW8: Arabidopsis bro 95.7 0.19 4E-06 46.6 11.8 80 2-87 7-86 (147)
78 PRK00080 ruvB Holliday junctio 95.5 0.27 5.8E-06 53.2 14.4 190 211-434 120-311 (328)
79 TIGR00635 ruvB Holliday juncti 95.4 0.24 5.3E-06 52.9 13.5 190 210-433 98-289 (305)
80 TIGR02928 orc1/cdc6 family rep 95.4 2.8 6.1E-05 46.1 22.4 214 207-434 114-351 (365)
81 KOG0473 Leucine-rich repeat pr 95.2 0.0006 1.3E-08 65.7 -6.1 88 519-606 37-124 (326)
82 PF00560 LRR_1: Leucine Rich R 94.7 0.015 3.3E-07 34.3 1.1 21 571-591 1-21 (22)
83 COG2909 MalT ATP-dependent tra 94.1 1 2.2E-05 52.7 14.5 218 205-459 112-339 (894)
84 COG3903 Predicted ATPase [Gene 94.1 0.041 8.9E-07 58.6 3.3 231 207-456 75-312 (414)
85 PF13504 LRR_7: Leucine rich r 93.1 0.059 1.3E-06 29.4 1.4 13 549-561 3-15 (17)
86 PF01637 Arch_ATPase: Archaeal 92.6 1.2 2.6E-05 45.2 11.5 100 220-324 118-233 (234)
87 PF13504 LRR_7: Leucine rich r 92.5 0.085 1.8E-06 28.8 1.5 17 570-586 1-17 (17)
88 PF13173 AAA_14: AAA domain 91.6 0.44 9.6E-06 43.3 6.1 74 210-283 51-127 (128)
89 PRK05564 DNA polymerase III su 90.9 3 6.6E-05 44.6 12.7 96 218-324 92-189 (313)
90 PF13306 LRR_5: Leucine rich r 90.7 0.52 1.1E-05 42.7 5.7 80 519-601 7-89 (129)
91 KOG0473 Leucine-rich repeat pr 90.7 0.011 2.4E-07 57.2 -5.5 85 542-638 37-121 (326)
92 KOG3864 Uncharacterized conser 90.1 0.026 5.6E-07 53.9 -3.5 36 723-758 101-136 (221)
93 PRK09087 hypothetical protein; 89.5 4.4 9.6E-05 40.9 11.7 93 222-324 89-194 (226)
94 PF13306 LRR_5: Leucine rich r 89.2 0.48 1E-05 43.0 4.2 12 743-754 54-65 (129)
95 PRK07471 DNA polymerase III su 89.0 2.5 5.4E-05 46.1 10.1 96 219-325 140-238 (365)
96 KOG3864 Uncharacterized conser 88.7 0.034 7.4E-07 53.1 -3.8 82 749-830 103-187 (221)
97 PRK06645 DNA polymerase III su 88.0 5.2 0.00011 45.6 12.1 99 217-322 125-226 (507)
98 TIGR00678 holB DNA polymerase 86.9 3.2 7E-05 40.6 8.7 90 219-321 95-187 (188)
99 PRK13342 recombination factor 86.4 5.5 0.00012 44.5 11.3 102 218-326 90-197 (413)
100 COG3899 Predicted ATPase [Gene 86.3 7.3 0.00016 47.7 12.9 222 212-456 145-384 (849)
101 TIGR03420 DnaA_homol_Hda DnaA 86.3 2.6 5.5E-05 42.7 7.9 97 222-326 92-202 (226)
102 smart00369 LRR_TYP Leucine-ric 86.3 0.63 1.4E-05 28.6 2.1 21 569-589 1-21 (26)
103 smart00370 LRR Leucine-rich re 86.3 0.63 1.4E-05 28.6 2.1 21 569-589 1-21 (26)
104 PRK09112 DNA polymerase III su 85.6 5.2 0.00011 43.4 10.1 99 219-326 140-241 (351)
105 smart00370 LRR Leucine-rich re 85.5 0.53 1.2E-05 28.9 1.5 21 546-566 1-21 (26)
106 smart00369 LRR_TYP Leucine-ric 85.5 0.53 1.2E-05 28.9 1.5 21 546-566 1-21 (26)
107 TIGR02903 spore_lon_C ATP-depe 83.3 5.8 0.00013 46.7 9.9 115 207-328 279-398 (615)
108 PRK12323 DNA polymerase III su 80.5 11 0.00025 43.7 10.4 101 218-325 122-225 (700)
109 PRK08727 hypothetical protein; 79.8 8.1 0.00018 39.3 8.4 93 221-321 94-200 (233)
110 COG1373 Predicted ATPase (AAA+ 78.7 32 0.0007 38.1 13.3 66 220-286 94-162 (398)
111 PRK05707 DNA polymerase III su 77.9 15 0.00033 39.4 10.2 95 219-325 106-203 (328)
112 PRK08084 DNA replication initi 77.6 9.8 0.00021 38.7 8.3 90 222-319 99-203 (235)
113 PRK14961 DNA polymerase III su 76.6 15 0.00034 40.1 10.0 97 219-322 118-217 (363)
114 PRK07003 DNA polymerase III su 76.2 51 0.0011 39.3 14.1 100 219-325 118-221 (830)
115 PLN03025 replication factor C 75.5 20 0.00044 38.4 10.4 94 219-319 98-194 (319)
116 TIGR02397 dnaX_nterm DNA polym 75.4 21 0.00046 38.9 10.8 100 219-325 116-218 (355)
117 COG2256 MGS1 ATPase related to 75.2 17 0.00037 39.2 9.2 94 216-318 100-205 (436)
118 PRK07940 DNA polymerase III su 74.9 20 0.00043 39.6 10.2 95 219-325 116-213 (394)
119 PRK14963 DNA polymerase III su 73.9 17 0.00036 41.7 9.6 104 219-329 115-222 (504)
120 PRK12402 replication factor C 73.2 15 0.00032 39.8 8.9 97 219-322 124-223 (337)
121 KOG4308 LRR-containing protein 72.8 0.15 3.2E-06 57.5 -7.1 164 518-688 109-303 (478)
122 PF00308 Bac_DnaA: Bacterial d 72.5 11 0.00025 37.8 7.1 97 213-318 91-201 (219)
123 PRK05642 DNA replication initi 71.9 19 0.00042 36.6 8.7 91 223-321 100-204 (234)
124 PTZ00112 origin recognition co 71.8 1.7E+02 0.0038 35.7 16.9 194 221-434 870-1087(1164)
125 PRK06620 hypothetical protein; 71.0 20 0.00044 35.8 8.4 89 221-318 86-182 (214)
126 smart00364 LRR_BAC Leucine-ric 70.3 2.4 5.3E-05 26.0 1.0 17 548-564 3-19 (26)
127 PRK08691 DNA polymerase III su 70.1 38 0.00083 40.0 11.3 98 219-323 118-218 (709)
128 KOG4308 LRR-containing protein 69.7 0.096 2.1E-06 59.0 -9.4 158 524-688 87-275 (478)
129 COG0593 DnaA ATPase involved i 68.8 81 0.0018 34.8 12.9 192 221-447 176-384 (408)
130 PRK14959 DNA polymerase III su 68.1 25 0.00054 41.0 9.3 106 218-330 117-226 (624)
131 PRK14957 DNA polymerase III su 67.8 32 0.0007 39.7 10.1 102 218-326 117-222 (546)
132 PRK14960 DNA polymerase III su 66.4 60 0.0013 38.1 11.8 100 218-324 116-218 (702)
133 PRK14955 DNA polymerase III su 65.4 26 0.00057 38.9 8.7 101 219-326 126-230 (397)
134 PF13516 LRR_6: Leucine Rich r 64.0 1.2 2.6E-05 26.7 -1.2 19 723-741 2-20 (24)
135 PRK14954 DNA polymerase III su 63.8 50 0.0011 38.8 10.8 101 219-326 126-230 (620)
136 PRK14956 DNA polymerase III su 63.2 48 0.001 37.4 10.1 97 218-321 119-218 (484)
137 PF14516 AAA_35: AAA-like doma 62.7 1.7E+02 0.0036 31.6 14.1 54 271-333 194-247 (331)
138 PRK06871 DNA polymerase III su 62.5 99 0.0021 33.1 12.0 92 219-322 106-200 (325)
139 PRK14087 dnaA chromosomal repl 62.3 1.1E+02 0.0023 34.7 12.9 100 221-326 207-320 (450)
140 PRK14086 dnaA chromosomal repl 62.2 74 0.0016 37.1 11.5 88 223-318 380-481 (617)
141 PRK13341 recombination factor 61.8 43 0.00093 40.2 10.0 95 219-318 108-210 (725)
142 PRK08769 DNA polymerase III su 61.7 43 0.00094 35.7 9.1 95 219-326 112-209 (319)
143 PRK14964 DNA polymerase III su 61.5 74 0.0016 36.2 11.3 96 219-321 115-213 (491)
144 PRK14949 DNA polymerase III su 61.4 72 0.0016 38.9 11.5 100 218-324 117-219 (944)
145 PRK08451 DNA polymerase III su 61.3 53 0.0012 37.7 10.2 100 219-325 116-218 (535)
146 PRK14971 DNA polymerase III su 60.6 57 0.0012 38.5 10.6 96 219-321 120-218 (614)
147 smart00367 LRR_CC Leucine-rich 59.8 5.5 0.00012 24.4 1.2 16 794-809 1-16 (26)
148 PRK00440 rfc replication facto 59.2 68 0.0015 34.2 10.5 95 220-321 102-199 (319)
149 PRK07994 DNA polymerase III su 59.1 76 0.0016 37.4 11.2 101 218-325 117-220 (647)
150 KOG0989 Replication factor C, 59.1 33 0.00072 35.7 7.2 89 223-318 132-223 (346)
151 TIGR01242 26Sp45 26S proteasom 58.9 55 0.0012 35.9 9.7 94 220-319 215-328 (364)
152 PRK07133 DNA polymerase III su 58.8 78 0.0017 37.8 11.2 101 219-326 117-221 (725)
153 PRK14951 DNA polymerase III su 58.6 56 0.0012 38.3 10.0 99 219-324 123-224 (618)
154 PRK07399 DNA polymerase III su 57.1 64 0.0014 34.5 9.5 97 218-324 122-220 (314)
155 TIGR00362 DnaA chromosomal rep 56.3 1.4E+02 0.003 33.3 12.6 116 223-346 202-337 (405)
156 PRK14962 DNA polymerase III su 56.2 46 0.001 37.8 8.6 105 218-329 115-223 (472)
157 PRK04195 replication factor C 54.5 3E+02 0.0064 31.5 15.0 96 220-324 98-201 (482)
158 PRK14970 DNA polymerase III su 54.4 56 0.0012 35.8 9.0 102 219-327 107-212 (367)
159 PF02463 SMC_N: RecF/RecN/SMC 54.4 14 0.00031 37.1 3.9 46 220-265 158-206 (220)
160 PRK06305 DNA polymerase III su 54.0 1.1E+02 0.0024 34.6 11.2 101 219-326 120-224 (451)
161 PRK14950 DNA polymerase III su 53.4 85 0.0019 36.9 10.6 100 219-325 119-221 (585)
162 PRK07764 DNA polymerase III su 53.0 64 0.0014 39.4 9.6 104 218-328 118-225 (824)
163 smart00365 LRR_SD22 Leucine-ri 53.0 11 0.00024 23.3 1.7 14 570-583 2-15 (26)
164 PRK08903 DnaA regulatory inact 52.7 49 0.0011 33.3 7.6 101 221-329 91-203 (227)
165 PRK00149 dnaA chromosomal repl 52.5 1.3E+02 0.0028 34.1 11.6 117 222-346 213-349 (450)
166 PRK04132 replication factor C 51.5 1.5E+02 0.0032 36.3 12.1 111 206-323 610-729 (846)
167 PRK06964 DNA polymerase III su 51.2 81 0.0018 34.1 9.1 93 219-326 131-226 (342)
168 PRK07993 DNA polymerase III su 50.7 1.3E+02 0.0028 32.4 10.7 93 219-323 107-202 (334)
169 PRK14969 DNA polymerase III su 49.3 80 0.0017 36.5 9.3 96 218-320 117-215 (527)
170 KOG2035 Replication factor C, 47.4 2.4E+02 0.0052 29.2 10.9 140 224-370 131-282 (351)
171 cd00561 CobA_CobO_BtuR ATP:cor 47.4 41 0.00089 31.7 5.4 47 212-258 86-138 (159)
172 PRK05896 DNA polymerase III su 46.2 1.3E+02 0.0027 35.2 10.1 101 219-327 119-223 (605)
173 PRK09111 DNA polymerase III su 45.7 96 0.0021 36.4 9.2 99 219-324 131-232 (598)
174 KOG2227 Pre-initiation complex 43.3 91 0.002 34.6 7.8 121 207-329 241-376 (529)
175 PRK06090 DNA polymerase III su 42.5 1.3E+02 0.0027 32.2 8.9 91 220-325 108-201 (319)
176 PF06144 DNA_pol3_delta: DNA p 42.4 1.4E+02 0.003 28.2 8.7 97 219-322 56-163 (172)
177 PRK14958 DNA polymerase III su 42.1 1.2E+02 0.0026 34.9 9.2 99 218-323 117-218 (509)
178 PRK14953 DNA polymerase III su 41.8 1.6E+02 0.0034 33.7 10.0 100 218-324 117-219 (486)
179 TIGR02880 cbbX_cfxQ probable R 40.6 1.7E+02 0.0036 30.8 9.4 72 222-293 123-210 (284)
180 PRK08058 DNA polymerase III su 40.5 2.6E+02 0.0057 30.0 11.2 69 219-289 109-180 (329)
181 PRK14952 DNA polymerase III su 39.9 1.7E+02 0.0037 34.2 10.1 104 219-329 117-224 (584)
182 KOG3763 mRNA export factor TAP 39.8 11 0.00024 42.2 0.4 12 722-733 243-254 (585)
183 PRK07132 DNA polymerase III su 38.0 2E+02 0.0044 30.4 9.5 93 219-324 89-184 (299)
184 PRK14948 DNA polymerase III su 37.4 1.8E+02 0.0039 34.4 9.8 100 219-325 120-222 (620)
185 PF13177 DNA_pol3_delta2: DNA 37.3 44 0.00095 31.7 4.1 59 219-279 101-162 (162)
186 PRK06647 DNA polymerase III su 36.9 2.1E+02 0.0045 33.4 10.2 99 218-323 117-218 (563)
187 smart00368 LRR_RI Leucine rich 35.5 25 0.00053 22.0 1.4 12 525-536 3-14 (28)
188 CHL00181 cbbX CbbX; Provisiona 35.4 2.4E+02 0.0053 29.6 9.7 72 222-293 124-211 (287)
189 TIGR02501 type_III_yscE type I 34.8 2.3E+02 0.0049 22.3 7.3 55 27-89 11-65 (67)
190 PHA02544 44 clamp loader, smal 34.6 4.6E+02 0.01 27.7 12.1 68 220-289 100-171 (316)
191 PF05673 DUF815: Protein of un 34.0 5.3E+02 0.011 26.3 13.4 45 218-262 104-155 (249)
192 PRK14965 DNA polymerase III su 32.9 1.2E+02 0.0025 35.6 7.4 102 219-327 118-223 (576)
193 PRK12422 chromosomal replicati 32.2 7E+02 0.015 28.2 13.2 70 222-294 204-287 (445)
194 PRK05563 DNA polymerase III su 31.4 2.5E+02 0.0055 32.8 9.8 98 218-322 117-217 (559)
195 PF15237 PTRF_SDPR: PTRF/SDPR 30.5 3.8E+02 0.0082 26.9 9.1 78 5-88 6-83 (246)
196 KOG0994 Extracellular matrix g 29.1 1.2E+03 0.027 29.3 14.4 60 26-88 1651-1714(1758)
197 COG2607 Predicted ATPase (AAA+ 29.0 1.9E+02 0.0041 29.3 6.8 76 169-245 58-167 (287)
198 cd00009 AAA The AAA+ (ATPases 28.9 1E+02 0.0022 27.8 5.1 43 217-259 81-131 (151)
199 TIGR01128 holA DNA polymerase 28.0 5.6E+02 0.012 26.8 11.3 112 206-322 31-150 (302)
200 PF08614 ATG16: Autophagy prot 27.5 4.6E+02 0.01 25.6 9.6 49 24-79 139-192 (194)
201 KOG3763 mRNA export factor TAP 25.6 23 0.00051 39.8 0.0 81 721-801 216-307 (585)
202 PRK14088 dnaA chromosomal repl 25.3 7.1E+02 0.015 28.0 11.8 91 220-318 194-298 (440)
203 PF10393 Matrilin_ccoil: Trime 24.9 2.1E+02 0.0045 20.7 4.6 31 21-51 15-45 (47)
204 PF13401 AAA_22: AAA domain; P 24.7 1.1E+02 0.0024 27.3 4.4 52 204-257 70-125 (131)
205 PRK05986 cob(I)alamin adenolsy 23.7 1.7E+02 0.0036 28.6 5.4 50 209-258 103-158 (191)
206 PRK10869 recombination and rep 23.3 7.2E+02 0.016 29.0 11.6 28 63-90 261-288 (553)
207 PLN03188 kinesin-12 family pro 23.1 9.3E+02 0.02 30.8 12.4 45 6-50 1149-1194(1320)
208 PRK08699 DNA polymerase III su 22.9 4.1E+02 0.0088 28.6 8.8 69 219-290 113-184 (325)
209 COG2109 BtuR ATP:corrinoid ade 21.9 2.2E+02 0.0047 27.7 5.6 49 210-258 111-165 (198)
210 PF00512 HisKA: His Kinase A ( 21.8 2.8E+02 0.0061 21.1 5.7 53 32-90 11-63 (68)
211 PRK15366 type III secretion sy 21.4 4.4E+02 0.0096 21.3 7.7 55 29-91 16-70 (80)
212 PRK07414 cob(I)yrinic acid a,c 20.6 1.7E+02 0.0037 28.1 4.7 50 209-258 103-158 (178)
213 PF05055 DUF677: Protein of un 20.5 7.4E+02 0.016 26.7 10.0 60 24-90 259-318 (336)
214 TIGR02881 spore_V_K stage V sp 20.4 5E+02 0.011 26.7 8.8 67 222-293 107-193 (261)
215 PF10691 DUF2497: Protein of u 20.1 3.1E+02 0.0068 22.0 5.3 9 63-71 45-53 (73)
216 PF09869 DUF2096: Uncharacteri 20.1 2.5E+02 0.0055 26.4 5.4 44 29-81 49-92 (169)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-81 Score=733.63 Aligned_cols=777 Identities=26% Similarity=0.383 Sum_probs=577.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCchhHHHHHHHHHHHHhhhhhH
Q 002780 2 AEAAVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADARAAVEELEGGGEESVRTWVKQLRDEAYRIED 81 (882)
Q Consensus 2 A~~~v~~~~~kl~~~l~~e~~~~~~v~~~~~~L~~~L~~i~a~l~~ae~~~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD 81 (882)
|++.+++.++|+.+++.+++..+.++++.+..|+++|..++++++||++++... ..++.|.+.+++++|++||
T Consensus 1 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~-------~~~~~~~e~~~~~~~~~e~ 73 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDL-------ERRVNWEEDVGDLVYLAED 73 (889)
T ss_pred CCeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchH-------HHHHHHHHHHHHHHHHHHH
Confidence 355667788999999999999999999999999999999999999999999887 8999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCC-cc---chhhHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCCCcc
Q 002780 82 VIDEYTLMVAKLPHGRGL-VG---VLRRISRFIKKLKLRRGVATEIQDIKSALADIKRRGESYRFRSIDEPSSSGTRNVI 157 (882)
Q Consensus 82 ~lD~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 157 (882)
+++.|...... .+..+ .. ...+..+ -..++++.+..+..+.+++..+.+.++.++....-...+... .
T Consensus 74 ~~~~~~v~~~~--~~~~~~l~~~~~~~~~~c---~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~-~-- 145 (889)
T KOG4658|consen 74 IIWLFLVEEIE--RKANDLLSTRSVERQRLC---LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESL-D-- 145 (889)
T ss_pred HHHHHHHHHHH--HHHhHHhhhhHHHHHHHh---hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccc-c--
Confidence 99999887765 22111 11 1111111 126778888888888888888888888887654221101000 0
Q ss_pred ccCCCccccccCCCceEEeccchHHHHH-----------------------HHhhhhh----------------------
Q 002780 158 PHDSRVRSFFVEDDEVVGIESIKDKLID-----------------------LMEFHRV---------------------- 192 (882)
Q Consensus 158 ~~~~~~~~~~~~~~~~vG~~~~~~~l~~-----------------------~~~i~~~---------------------- 192 (882)
+...+++.+...+.+ ||.++.++++.+ ++++...
T Consensus 146 ~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~ 224 (889)
T KOG4658|consen 146 PREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTT 224 (889)
T ss_pred chhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccH
Confidence 112233333333334 777777666666 2222221
Q ss_pred ------cCCCC---CcccCccCHHHHHHHHHHHhCCceEEEEEecCCChhhHHHhHHhcCCCCCCcEEEEecCchHHHhh
Q 002780 193 ------TNEPA---PVEIHDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKY 263 (882)
Q Consensus 193 ------~~~~~---~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~ 263 (882)
+...+ .......+.++++..|.+.|++|||+|||||||+..+|+.+..++|...+||+|++|||++.|+..
T Consensus 225 ~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~ 304 (889)
T KOG4658|consen 225 RKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGR 304 (889)
T ss_pred HhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhc
Confidence 11111 111222334689999999999999999999999999999999999999999999999999999998
Q ss_pred -hccCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCCChHHHHHH
Q 002780 264 -CKSSSSVHVHELETLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKL 342 (882)
Q Consensus 264 -~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~~w~~~ 342 (882)
|++. ..++++.|+++|||.||++.||....+ ..+.+.++|++||++|+|+|||++++|+.|++|.. .++|+++
T Consensus 305 ~m~~~---~~~~v~~L~~~eaW~LF~~~v~~~~~~--~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t-~~eW~~~ 378 (889)
T KOG4658|consen 305 AMGVD---YPIEVECLTPEEAWDLFQKKVGPNTLG--SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT-VQEWRRA 378 (889)
T ss_pred cccCC---ccccccccCccccHHHHHHhhcccccc--ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc-HHHHHHH
Confidence 6654 899999999999999999999987532 23449999999999999999999999999999987 8899999
Q ss_pred HHHhccccCCC--CChhhHHHHHHhccCCCCcchhHHHhhccccCCCceechHHHHHHHHHcCcccc-CCCCCHHHHHHH
Q 002780 343 FDRLGSILGSD--PHLKDCNRVLSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQY-SKRPTSEQVAEE 419 (882)
Q Consensus 343 l~~~~~~~~~~--~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~-~~~~~~e~~~~~ 419 (882)
.+.+.+....+ ...+.+.++|++||+.||+++|.||+|||+||+||.|+++.||.+|+||||+.+ ..+.++++.|++
T Consensus 379 ~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~ 458 (889)
T KOG4658|consen 379 LNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYD 458 (889)
T ss_pred HccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHH
Confidence 99998874432 235789999999999999889999999999999999999999999999999988 557889999999
Q ss_pred HHHHHHhCCcccccccCCCCcEeEeeccHHHHHHHHHHhh-----HhCceEeeC-----CCCcccCCCeEEEEEeccCCc
Q 002780 420 YLNELIDRSLVQVSKRDISGRARICQVHDLMHQIIIRKTE-----ELGFSRVMN-----GEDLSRSSKTRRITVQRSIDD 489 (882)
Q Consensus 420 ~~~~L~~~sll~~~~~~~~g~~~~~~mhdlv~dla~~~~~-----~~~~~~~~~-----~~~~~~~~~~r~l~~~~~~~~ 489 (882)
|+.+|++++|++..... ++...|+|||+|+|+|.++++ +++++...+ ......+..+||++++.....
T Consensus 459 ~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~ 536 (889)
T KOG4658|consen 459 YIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIE 536 (889)
T ss_pred HHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchh
Confidence 99999999999987754 677899999999999999999 666443322 112234457899999988776
Q ss_pred cccccccccceeEEEEecCCCCCcccccccccCCceeeEEEecCCC-CCCCccccCCccCCcEEEEecCCCccccccccC
Q 002780 490 GALESIKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAP-VDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGN 568 (882)
Q Consensus 490 ~~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~ 568 (882)
.......++++++|.+..+..........+|..++.||||||++|. +.++|++|++|.|||||+|+++.++.+|.++.+
T Consensus 537 ~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~ 616 (889)
T KOG4658|consen 537 HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN 616 (889)
T ss_pred hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH
Confidence 6667788889999999987531233445668999999999999765 569999999999999999999999999999999
Q ss_pred CCCCcEEEccCc-cccccchhhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecCHHhHHHhc
Q 002780 569 LLSLETLNMKNT-LVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELM 647 (882)
Q Consensus 569 L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~ 647 (882)
|+.|.+||+..+ .+..+|..+..|.+||+|.+...... .....-..+.++.+|+.|.....+......+.
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~---------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~ 687 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS---------NDKLLLKELENLEHLENLSITISSVLLLEDLL 687 (889)
T ss_pred HHhhheeccccccccccccchhhhcccccEEEeeccccc---------cchhhHHhhhcccchhhheeecchhHhHhhhh
Confidence 999999999988 56666666667999999999874322 11122223455566666655444444445555
Q ss_pred CCCCCcEEEEEe--cCCCchhHHHHhccCCCCCEEEEeecCCccccc--cCCCC--C-CCCCccEEEeecc-CCCCCccc
Q 002780 648 KLRQLRMLSIRP--QNGNGKDLCALITNLENLETLTVEMTSKEEMLD--LQSLS--S-PPQYLQRLHLTGN-MKKLPDWI 719 (882)
Q Consensus 648 ~l~~L~~L~l~~--~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~--l~~l~--~-~~~~L~~L~l~~~-~~~lp~~~ 719 (882)
.+..|..+...- ..........++..+.+|+.|.+..+...+... ..... . ++ ++.++.+..+ ....+.|.
T Consensus 688 ~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~-~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 688 GMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP-NLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred hhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH-HHHHHHhhccccccccchh
Confidence 555555322211 112223345667889999999999987654321 01000 0 11 3444444443 34566677
Q ss_pred cCCCCccEEEEeecCCCcccchhhcCCCccceeEeecccCCCe-EEEccCCCcccceeEecccCCceeeEEcC----CCc
Q 002780 720 FKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYEL-FHFEAGWFPKLQKLLLWEFKAVKSVIIEK----GAM 794 (882)
Q Consensus 720 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~ 794 (882)
...++|+.|.+.+|....++++....+..+..+.+..+..... .....++||++..+.+.+-. +..+.... +.|
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~ 845 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK-LEELIVEECPKLGKL 845 (889)
T ss_pred hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccc-hhheehhcCcccccC
Confidence 7789999999999998888888888777777755554433333 45556667766666666433 44444333 556
Q ss_pred cCccEEEeecC-CCcCcccc
Q 002780 795 PDIRELWIGPC-PLLMEIPI 813 (882)
Q Consensus 795 ~~L~~L~l~~c-~~l~~lp~ 813 (882)
|.+.++.+.+| ..+...|.
T Consensus 846 P~~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 846 PLLSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred ccccccceeccccceeecCC
Confidence 66666666665 44444444
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.7e-57 Score=563.31 Aligned_cols=589 Identities=19% Similarity=0.236 Sum_probs=449.9
Q ss_pred HHHHHHhCCceEEEEEecCCChhhHHHhHHhcCCCCCCcEEEEecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHH
Q 002780 211 TALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRK 290 (882)
Q Consensus 211 ~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 290 (882)
..++++|++||+||||||||+.++|+.+.....+.++||+||||||+++++..++.. ++|+++.|++++||+||+++
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~---~~~~v~~l~~~ea~~LF~~~ 363 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID---HIYEVCLPSNELALEMFCRS 363 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC---eEEEecCCCHHHHHHHHHHH
Confidence 457888999999999999999999999998888889999999999999999877655 79999999999999999999
Q ss_pred HcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCCChHHHHHHHHHhccccCCCCChhhHHHHHHhccCCC
Q 002780 291 VLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYYAL 370 (882)
Q Consensus 291 af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L 370 (882)
||+.. .+++++.+++++||++|+|+||||+++|++|+++. .++|+.+++++.+... ..|.++|++||++|
T Consensus 364 Af~~~---~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~--~~~W~~~l~~L~~~~~-----~~I~~~L~~SYd~L 433 (1153)
T PLN03210 364 AFKKN---SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRD--KEDWMDMLPRLRNGLD-----GKIEKTLRVSYDGL 433 (1153)
T ss_pred hcCCC---CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCC--HHHHHHHHHHHHhCcc-----HHHHHHHHHhhhcc
Confidence 99875 34678999999999999999999999999999875 6899999999876543 57999999999999
Q ss_pred Cc-chhHHHhhccccCCCceechHHHHHHHHHcCccccCCCCCHHHHHHHHHHHHHhCCcccccccCCCCcEeEeeccHH
Q 002780 371 PH-HLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSKRDISGRARICQVHDL 449 (882)
Q Consensus 371 ~~-~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~~~~L~~~sll~~~~~~~~g~~~~~~mhdl 449 (882)
++ ..|.||++||+||.+..++ .+..|+|.+.... +..++.|+++||++... ..+.|||+
T Consensus 434 ~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~~-------~~~~MHdL 493 (1153)
T PLN03210 434 NNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKSLIHVRE-------DIVEMHSL 493 (1153)
T ss_pred CccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcCCEEEcC-------CeEEhhhH
Confidence 87 4999999999999987654 4677888765532 23388999999998743 24899999
Q ss_pred HHHHHHHHhhHhCc-----eEeeCCC-------CcccCCCeEEEEEeccCCcc----ccccccccceeEEEEecCCC---
Q 002780 450 MHQIIIRKTEELGF-----SRVMNGE-------DLSRSSKTRRITVQRSIDDG----ALESIKESKVRSVFLFNVDK--- 510 (882)
Q Consensus 450 v~dla~~~~~~~~~-----~~~~~~~-------~~~~~~~~r~l~~~~~~~~~----~~~~~~~~~lr~L~~~~~~~--- 510 (882)
+|++|+.+++++.- ...++.. ......+++.+++....... ......+.+|+.|.++....
T Consensus 494 l~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~ 573 (1153)
T PLN03210 494 LQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQK 573 (1153)
T ss_pred HHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccc
Confidence 99999999877631 1111111 11123456777665332211 11234577788887764421
Q ss_pred --CCcccccccccCC-ceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCc-cccccc
Q 002780 511 --LPDSFMNASIANF-KLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNT-LVRELP 586 (882)
Q Consensus 511 --~~~~~~~~~~~~~-~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~-~l~~lp 586 (882)
... .++..+..+ ..||.|.+.++.+..+|..+ .+.+|+.|+++++.+..+|..+..+++|+.|+|++| .+..+|
T Consensus 574 ~~~~~-~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip 651 (1153)
T PLN03210 574 KEVRW-HLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP 651 (1153)
T ss_pred cccee-ecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC
Confidence 111 122333344 46999999999999999888 578999999999999999999999999999999887 678888
Q ss_pred hhhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecC-HHhHHHhcCCCCCcEEEEEecCCCch
Q 002780 587 VEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEAD-SQVLKELMKLRQLRMLSIRPQNGNGK 665 (882)
Q Consensus 587 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 665 (882)
.++.+++|+.|++++|. ....+|..++++++|+.|++.+|. ...++....+++|+.|+++++....
T Consensus 652 -~ls~l~~Le~L~L~~c~-----------~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~- 718 (1153)
T PLN03210 652 -DLSMATNLETLKLSDCS-----------SLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLK- 718 (1153)
T ss_pred -ccccCCcccEEEecCCC-----------CccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcc-
Confidence 58889999999998864 235788889999999999998873 2222222368889999988753221
Q ss_pred hHHHHhccCCCCCEEEEeecCCccccccCCCCCCCCCccEEEeeccC--------CCCCc-cccCCCCccEEEEeecCCC
Q 002780 666 DLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNM--------KKLPD-WIFKLKNLIRLGLDLSGLT 736 (882)
Q Consensus 666 ~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--------~~lp~-~~~~l~~L~~L~L~~~~l~ 736 (882)
.++. ...+|+.|+++++....... ....+ +|++|.+.++. ..++. ....+++|+.|+|++|...
T Consensus 719 ~~p~---~~~nL~~L~L~~n~i~~lP~---~~~l~-~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 719 SFPD---ISTNISWLDLDETAIEEFPS---NLRLE-NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred cccc---ccCCcCeeecCCCccccccc---ccccc-ccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence 2222 24688899998876543221 11233 77778776531 11111 2223578999999999876
Q ss_pred cccchhhcCCCccceeEeecccCCCeEEEccCCCcccceeEecccCCceeeEEcCCCccCccEEEeecCCCcCccccccc
Q 002780 737 EEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIE 816 (882)
Q Consensus 737 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~ 816 (882)
...|..++++++|+.|+|++|...+.++... .+++|+.|++++|..+..+|.. .++|+.|+|++|. +..+|..+.
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~-i~~iP~si~ 866 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTG-IEEVPWWIE 866 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCC-CccChHHHh
Confidence 7778889999999999999887666666544 6899999999999888776642 4689999999876 567899999
Q ss_pred ccccCcEEEEecChHHHHHhcccccccccccccceEEEEEeeccccccccccccCCC
Q 002780 817 HLKNLKLLVFAGMVKQVYYMTKDENWGKVTENIPDVLVTFMEAGQLFHYRKDILSSL 873 (882)
Q Consensus 817 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~L~~l~l~~N~~~~~~ 873 (882)
.+++|+.|++++|+ ....+|.....+++|+.+++++|.-...+
T Consensus 867 ~l~~L~~L~L~~C~--------------~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 867 KFSNLSFLDMNGCN--------------NLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cCCCCCEEECCCCC--------------CcCccCcccccccCCCeeecCCCcccccc
Confidence 99999999999995 55578888888899999999988755433
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=5.3e-32 Score=288.36 Aligned_cols=202 Identities=35% Similarity=0.578 Sum_probs=162.3
Q ss_pred CccCHHHHHHHHHHHhCCceEEEEEecCCChhhHHHhHHhcCCCCCCcEEEEecCchHHHhhhccCCCcceeecCCCChH
Q 002780 202 HDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPN 281 (882)
Q Consensus 202 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~l~~L~~~ 281 (882)
...+..++...+++.|+++|+||||||||+...|+.+...++.+..||+||||||+..++..++.. ...+++++|+++
T Consensus 83 ~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~--~~~~~l~~L~~~ 160 (287)
T PF00931_consen 83 DPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT--DKVIELEPLSEE 160 (287)
T ss_dssp CCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC--EEEEECSS--HH
T ss_pred cccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc--cccccccccccc
Confidence 345678899999999999999999999999999999998888888899999999999999887642 279999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCCChHHHHHHHHHhccccCCC-CChhhHH
Q 002780 282 EARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSD-PHLKDCN 360 (882)
Q Consensus 282 ~~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~~w~~~l~~~~~~~~~~-~~~~~i~ 360 (882)
||++||++.++... ...++.+.+++++|+++|+|+|||++++|++|+.+.. ..+|+.+++.+.+..... .....+.
T Consensus 161 ea~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~-~~~w~~~~~~l~~~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 161 EALELFKKRAGRKE--SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKST-VDEWEEALEELENSLRESRDYDRSVF 237 (287)
T ss_dssp HHHHHHHHHHTSHS------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHS-SSSHHHHHHHHHHCHTCSSGSCHHHH
T ss_pred cccccccccccccc--ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 99999999998765 1234556788999999999999999999999976653 789999999887766432 2347899
Q ss_pred HHHHhccCCCCcchhHHHhhccccCCCceechHHHHHHHHHcCccccC
Q 002780 361 RVLSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYS 408 (882)
Q Consensus 361 ~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~ 408 (882)
.++.+||+.||++.|.||+|||+||+++.|+++.++++|+|+|||...
T Consensus 238 ~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 238 SALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=3.1e-29 Score=312.29 Aligned_cols=385 Identities=22% Similarity=0.229 Sum_probs=233.9
Q ss_pred CeEEEEEeccCCccccccccccceeEEEEecCCCCCcccccccccCCceeeEEEecCCCCC-CCccccCCccCCcEEEEe
Q 002780 477 KTRRITVQRSIDDGALESIKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVD-YLPEGVGNLFNLHYLSLR 555 (882)
Q Consensus 477 ~~r~l~~~~~~~~~~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~L~ 555 (882)
+.|++.+..+...........++|++|.+.++.. ....+..+.++++|++|+|++|.+. .+|..++++++|++|+|+
T Consensus 119 ~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~--~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML--SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCEEECcCCccccccCccccCCCCEEECcCCcc--cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 4455555443322211222345566666554432 1123344566667777777766664 566666667777777776
Q ss_pred cCCCc-cccccccCCCCCcEEEccCcccc-ccchhhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccc
Q 002780 556 NTKVK-IIPTSIGNLLSLETLNMKNTLVR-ELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKL 633 (882)
Q Consensus 556 ~~~l~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L 633 (882)
+|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+. ..+|..++++++|++|
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT-----------GPIPSSLGNLKNLQYL 265 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec-----------cccChhHhCCCCCCEE
Confidence 66655 55666666777777777666443 56666666777777777666544 2455566666666666
Q ss_pred cceecC--HHhHHHhcCCCCCcEEEEEecCCCchhHHHHhccCCCCCEEEEeecCCccccccCCCCCCCCCccEEEeecc
Q 002780 634 SIIEAD--SQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGN 711 (882)
Q Consensus 634 ~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 711 (882)
++..+. ...+..+..+++|+.|++++|.... .++..+.++++|+.|++++|...+..+ ..+...+ +|+.|++++|
T Consensus 266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~-~L~~L~L~~n 342 (968)
T PLN00113 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLP-RLQVLQLWSN 342 (968)
T ss_pred ECcCCeeeccCchhHhhccCcCEEECcCCeecc-CCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCC-CCCEEECcCC
Confidence 666552 2334455666666666666554333 234455666666666666665443321 1222333 6666666665
Q ss_pred C--CCCCccccCCCCccEEEEeecCCCcccchhhcCCCccceeEeecccCCCeEEEccCCCcccceeEecccCCceeeEE
Q 002780 712 M--KKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVII 789 (882)
Q Consensus 712 ~--~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 789 (882)
. +.+|.+++.+++|+.|+|++|.+.+..+..+..+++|+.|++++|.....++..++.+++|+.|++++|.....+|.
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence 2 35666666666666676666666555555566666666666666665555555556677777777777766556666
Q ss_pred cCCCccCccEEEeecCCCcCcccccccccccCcEEEEecChHH------HHH-hc--ccccccccccccceEEEEEeecc
Q 002780 790 EKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGMVKQ------VYY-MT--KDENWGKVTENIPDVLVTFMEAG 860 (882)
Q Consensus 790 ~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~------~~~-~~--~~~~~~~~~~~ip~~~~~~~~L~ 860 (882)
.+..+++|+.|++++|.....+|..+..+++|+.|++++|.-. +.. .+ .+...|++.+.+|..+..+++|+
T Consensus 423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 502 (968)
T PLN00113 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELM 502 (968)
T ss_pred hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccC
Confidence 6667777777777777766666666667777777777766310 000 00 11233446677888888888899
Q ss_pred ccccccccccCCCCHhH
Q 002780 861 QLFHYRKDILSSLSPEY 877 (882)
Q Consensus 861 ~l~l~~N~~~~~~p~~~ 877 (882)
.|++++|++.+.+|..+
T Consensus 503 ~L~Ls~N~l~~~~p~~~ 519 (968)
T PLN00113 503 QLKLSENKLSGEIPDEL 519 (968)
T ss_pred EEECcCCcceeeCChHH
Confidence 99999999888888764
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=4.2e-29 Score=311.12 Aligned_cols=369 Identities=20% Similarity=0.246 Sum_probs=183.2
Q ss_pred CeEEEEEeccCCcc--ccccccccceeEEEEecCCCCCcccccccccCCceeeEEEecCCCCC-CCccccCCccCCcEEE
Q 002780 477 KTRRITVQRSIDDG--ALESIKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVD-YLPEGVGNLFNLHYLS 553 (882)
Q Consensus 477 ~~r~l~~~~~~~~~--~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~ 553 (882)
+++.+.+....... .......++|+.|.+.++.. ...++...+..+++||+|+|++|.+. .+|. +.+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 45555555432211 11223455666666654432 11222333445566666666666554 3332 3455555555
Q ss_pred EecCCCc-cccccccCCCCCcEEEccCccc-cccchhhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccc
Q 002780 554 LRNTKVK-IIPTSIGNLLSLETLNMKNTLV-RELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQ 631 (882)
Q Consensus 554 L~~~~l~-~lp~~i~~L~~L~~L~L~~~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~ 631 (882)
|++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|++++|.+. ..+|..++++++|+
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~ 215 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-----------GQIPRELGQMKSLK 215 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc-----------CcCChHHcCcCCcc
Confidence 5555554 4555555555555555555532 345555555555555555554433 23444455555555
Q ss_pred cccceecC--HHhHHHhcCCCCCcEEEEEecCCCchhHHHHhccCCCCCEEEEeecCCccccccCCCCCCCCCccEEEee
Q 002780 632 KLSIIEAD--SQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLT 709 (882)
Q Consensus 632 ~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~ 709 (882)
+|++..+. ...+..++.+++|+.|++++|.... ..+..+.++++|+.|++++|...+..+ ..+.... +|+.|+++
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~-~L~~L~Ls 292 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQ-KLISLDLS 292 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceecc-ccChhHhCCCCCCEEECcCCeeeccCc-hhHhhcc-CcCEEECc
Confidence 55554442 2233444455555555554433222 233344445555555555443322211 1111122 44444444
Q ss_pred ccC--CCCCccccCCCCccEEEEeecCCCcccchhhcCCCccceeEeecccCCCeEEEccCCC-----------------
Q 002780 710 GNM--KKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWF----------------- 770 (882)
Q Consensus 710 ~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~----------------- 770 (882)
+|. +.+|.++..+++|+.|++++|.+.+..+..+..+++|+.|++++|.....++..++.+
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 441 2344444444444444444444444444444444444444444444443333334444
Q ss_pred -------cccceeEecccCCceeeEEcCCCccCccEEEeecCCCcCcccccccccccCcEEEEecChHHHHHhccccccc
Q 002780 771 -------PKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGMVKQVYYMTKDENWG 843 (882)
Q Consensus 771 -------~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 843 (882)
++|+.|++++|.....+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-------------- 438 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN-------------- 438 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC--------------
Confidence 44555555544443344444445555555555555544445555555555555555554
Q ss_pred ccccccceEEEEEeeccccccccccccCCCCHh
Q 002780 844 KVTENIPDVLVTFMEAGQLFHYRKDILSSLSPE 876 (882)
Q Consensus 844 ~~~~~ip~~~~~~~~L~~l~l~~N~~~~~~p~~ 876 (882)
++.+.+|..+..+++|+.|++++|++.+.+|..
T Consensus 439 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~ 471 (968)
T PLN00113 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471 (968)
T ss_pred cccCccChhhccCCCCcEEECcCceeeeecCcc
Confidence 366777777777888888888888888877764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.4e-26 Score=242.42 Aligned_cols=336 Identities=19% Similarity=0.261 Sum_probs=215.2
Q ss_pred ccccccCCceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccc--cccchhhhccc
Q 002780 516 MNASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLV--RELPVEIRNLK 593 (882)
Q Consensus 516 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l--~~lp~~i~~L~ 593 (882)
++.....+..++.|.|..+.+..+|+.++.|.+|+.|++++|++..+-..++.|+.|+.++++.|++ ..+|.+|.+|.
T Consensus 24 FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~ 103 (1255)
T KOG0444|consen 24 FPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLK 103 (1255)
T ss_pred CchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccc
Confidence 3445566667777777777777777777777777777777777666666666677777777766633 35666777777
Q ss_pred ccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecCHHhHH--HhcCCCCCcEEEEEecCCCchhHHHHh
Q 002780 594 KLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLK--ELMKLRQLRMLSIRPQNGNGKDLCALI 671 (882)
Q Consensus 594 ~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~l~~~l 671 (882)
.|..|+|++|.+. ..|.++..-+++-.|++++++...++ -+.+|+.|-.|++++|... .+|..+
T Consensus 104 dLt~lDLShNqL~------------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe--~LPPQ~ 169 (1255)
T KOG0444|consen 104 DLTILDLSHNQLR------------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE--MLPPQI 169 (1255)
T ss_pred cceeeecchhhhh------------hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh--hcCHHH
Confidence 7777777776443 56666666666666776666433322 2446666667777665433 355566
Q ss_pred ccCCCCCEEEEeecCCccccccCCCCCCCCCccEEEeecc---CCCCCccccCCCCccEEEEeecCCCcccchhhcCCCc
Q 002780 672 TNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGN---MKKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPN 748 (882)
Q Consensus 672 ~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~---~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 748 (882)
..+.+|++|.+++|.+... .+..+++.. +|+.|++++. ...+|.++..+.+|..++|+.|.+. ..|..+-++++
T Consensus 170 RRL~~LqtL~Ls~NPL~hf-QLrQLPsmt-sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~ 246 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHF-QLRQLPSMT-SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRN 246 (1255)
T ss_pred HHHhhhhhhhcCCChhhHH-HHhcCccch-hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhh
Confidence 6677777777777653211 122233332 6667777764 2467777777777788888777764 45667777777
Q ss_pred cceeEeecccCCCeEEEccCCCcccceeEecccCCceeeEEcCCCccCccEEEeecCCC-cCcccccccccccCcEEEEe
Q 002780 749 LLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPL-LMEIPIGIEHLKNLKLLVFA 827 (882)
Q Consensus 749 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~-l~~lp~~l~~l~~L~~L~l~ 827 (882)
|+.|+|++|.+.+ +....+.-.+|++|+++.|+ +..+|.....++.|++|.+.+|+. ...+|++|+.|..|+.+...
T Consensus 247 LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 247 LRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred hheeccCcCceee-eeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 8888877776654 23333445667777777765 566676677777777777766653 34567777777777776666
Q ss_pred cC-----hHHHHHhcc----cccccccccccceEEEEEeeccccccccccccC
Q 002780 828 GM-----VKQVYYMTK----DENWGKVTENIPDVLVTFMEAGQLFHYRKDILS 871 (882)
Q Consensus 828 ~~-----~~~~~~~~~----~~~~~~~~~~ip~~~~~~~~L~~l~l~~N~~~~ 871 (882)
+| |..++++.. ..++|.+| .+|+.+..++.|..||+..|+-.-
T Consensus 325 nN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 325 NNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence 54 222332211 14455455 788888888899999998888543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.5e-24 Score=228.07 Aligned_cols=353 Identities=18% Similarity=0.189 Sum_probs=218.9
Q ss_pred cccceeEEEEecCCCCCcccccccccCCceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCcccc-ccccCCCCCcE
Q 002780 496 KESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIP-TSIGNLLSLET 574 (882)
Q Consensus 496 ~~~~lr~L~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~ 574 (882)
-.+..++|.+.++.--. +-...|.++++|+.+++.+|.++.+|...+...||+.|+|.+|.|.++. +++..++.|++
T Consensus 76 lp~~t~~LdlsnNkl~~--id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSH--IDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred Cccceeeeecccccccc--CcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 34566777776655422 2235678899999999999999999988888888999999999888664 45788888999
Q ss_pred EEccCccccccch-hhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecCH--HhHHHhcCCCC
Q 002780 575 LNMKNTLVRELPV-EIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADS--QVLKELMKLRQ 651 (882)
Q Consensus 575 L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~--~~~~~l~~l~~ 651 (882)
|||+.|.+.++|. .+..-.++++|+|++|.++.. -...|..+.+|-+|.+..+.. -.+..+..|++
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-----------~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-----------ETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeecccccccc-----------ccccccccchheeeecccCcccccCHHHhhhcch
Confidence 9999998888874 455667899999998887631 112355566666666666632 22334555666
Q ss_pred CcEEEEEecCCCchhHHHHhccCCCCCEEEEeecCCccccc--c---------------------CCCCCCCCCccEEEe
Q 002780 652 LRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEMLD--L---------------------QSLSSPPQYLQRLHL 708 (882)
Q Consensus 652 L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~--l---------------------~~l~~~~~~L~~L~l 708 (882)
|+.|++..|.+.... ...+..+++|+.|.+..|+.....+ + ..+-.+. .|+.|++
T Consensus 223 L~~LdLnrN~irive-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt-~L~~L~l 300 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT-SLEQLDL 300 (873)
T ss_pred hhhhhccccceeeeh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc-hhhhhcc
Confidence 666666555433211 1224444555555554443321111 0 1111122 4555555
Q ss_pred ecc-CCC-CCccccCCCCccEEEEeecCCCcccchhhcCCCccceeEeecccCCCeEEEccCCCcccceeEecccCCcee
Q 002780 709 TGN-MKK-LPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKS 786 (882)
Q Consensus 709 ~~~-~~~-lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 786 (882)
+.| +.. -+..+..+++|+.|+|++|+++......|..|..|+.|.|+.|.+...-.+.+.++.+|+.|+|.+|...-.
T Consensus 301 S~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 301 SYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred chhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence 554 222 123334456666666666666655555666666666666666655444444556677777777777653222
Q ss_pred eE---EcCCCccCccEEEeecCCCcCccc-ccccccccCcEEEEecChHHHHHhcccccccccccccceEEEEEeecccc
Q 002780 787 VI---IEKGAMPDIRELWIGPCPLLMEIP-IGIEHLKNLKLLVFAGMVKQVYYMTKDENWGKVTENIPDVLVTFMEAGQL 862 (882)
Q Consensus 787 ~~---~~~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~L~~l 862 (882)
+. ..+..||+|++|.+.+|. ++.+| ..+..+++|++|++.+|+ +..--|+.|..+ .|+.|
T Consensus 381 IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Na--------------iaSIq~nAFe~m-~Lk~L 444 (873)
T KOG4194|consen 381 IEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNA--------------IASIQPNAFEPM-ELKEL 444 (873)
T ss_pred EecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCc--------------ceeecccccccc-hhhhh
Confidence 22 224457888888887776 56666 467777888888887764 333335555555 78888
Q ss_pred ccccccccCCCCHhHHh
Q 002780 863 FHYRKDILSSLSPEYVE 879 (882)
Q Consensus 863 ~l~~N~~~~~~p~~~~~ 879 (882)
-+..-.+.+..-..|+.
T Consensus 445 v~nSssflCDCql~Wl~ 461 (873)
T KOG4194|consen 445 VMNSSSFLCDCQLKWLA 461 (873)
T ss_pred hhcccceEEeccHHHHH
Confidence 77777777777666653
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.2e-25 Score=235.23 Aligned_cols=296 Identities=23% Similarity=0.237 Sum_probs=147.9
Q ss_pred cccccceeEEEEecCCCCCcccccccccCCceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCcccccc-ccCCCCC
Q 002780 494 SIKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTS-IGNLLSL 572 (882)
Q Consensus 494 ~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L 572 (882)
....+.||++.+..+.--...+ +..+-.++.|.+||||+|++.+.|..+..-+++-+|+|++|+|..+|.+ +-+|+-|
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGi-P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGI-PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL 152 (1255)
T ss_pred hccchhhHHHhhhccccccCCC-CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence 3445556666555443322222 2233355666666666666666666666666666666666666666655 3455556
Q ss_pred cEEEccCccccccchhhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecC---HHhHHHhcCC
Q 002780 573 ETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEAD---SQVLKELMKL 649 (882)
Q Consensus 573 ~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l 649 (882)
-.|||++|.+..+|+.+..|..|+.|.|++|.+..+ ....+| .|++|++|.+++.. ...+..+..+
T Consensus 153 LfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf-------QLrQLP----smtsL~vLhms~TqRTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF-------QLRQLP----SMTSLSVLHMSNTQRTLDNIPTSLDDL 221 (1255)
T ss_pred hhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHH-------HHhcCc----cchhhhhhhcccccchhhcCCCchhhh
Confidence 666666666666666666666666666666554321 122222 34555555555442 2233444555
Q ss_pred CCCcEEEEEecCCCchhHHHHhccCCCCCEEEEeecCCcccc-ccCCCCCCCCCccEEEeecc-CCCCCccccCCCCccE
Q 002780 650 RQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEML-DLQSLSSPPQYLQRLHLTGN-MKKLPDWIFKLKNLIR 727 (882)
Q Consensus 650 ~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~-~~~lp~~~~~l~~L~~ 727 (882)
.+|+.++++.|+... +|..+.++.+|+.|++++|.+++.. ....+. +|++|+++.| +..+|..+..+++|+.
T Consensus 222 ~NL~dvDlS~N~Lp~--vPecly~l~~LrrLNLS~N~iteL~~~~~~W~----~lEtLNlSrNQLt~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLPI--VPECLYKLRNLRRLNLSGNKITELNMTEGEWE----NLETLNLSRNQLTVLPDAVCKLTKLTK 295 (1255)
T ss_pred hhhhhccccccCCCc--chHHHhhhhhhheeccCcCceeeeeccHHHHh----hhhhhccccchhccchHHHhhhHHHHH
Confidence 555555555544332 3445555556666666555443322 111111 4555555554 3455555555555555
Q ss_pred EEEeecCCCc-ccchhhcCCCccceeEeecccCCCeEEEccCCCcccceeEecccCCceeeEEcCCCccCccEEEeecCC
Q 002780 728 LGLDLSGLTE-EPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCP 806 (882)
Q Consensus 728 L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 806 (882)
|.+.+|+++- ..|+.+|+|.+|+.+...+|.. +..|.....+++|+.|.|+.|. +-.+|..+.-+|.|+.|++..|+
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCc
Confidence 5555555431 2233445555555554443322 2333444444555555554443 33344444444555555555555
Q ss_pred CcC
Q 002780 807 LLM 809 (882)
Q Consensus 807 ~l~ 809 (882)
++.
T Consensus 374 nLV 376 (1255)
T KOG0444|consen 374 NLV 376 (1255)
T ss_pred Ccc
Confidence 444
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.7e-23 Score=220.11 Aligned_cols=313 Identities=20% Similarity=0.249 Sum_probs=243.9
Q ss_pred ccceeEEEEecCCCCCcccccccccCCceeeEEEecCCCCCCCccc-cCCccCCcEEEEecCCCccccc-cccCCCCCcE
Q 002780 497 ESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLPEG-VGNLFNLHYLSLRNTKVKIIPT-SIGNLLSLET 574 (882)
Q Consensus 497 ~~~lr~L~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~ 574 (882)
..++..|.+.++.. .+.-...++-++.||+||||.|.|..+|.. |..-.++++|+|++|.|+.+-. .|..|.+|.+
T Consensus 124 sghl~~L~L~~N~I--~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~t 201 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLI--SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLT 201 (873)
T ss_pred ccceeEEeeecccc--ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchhee
Confidence 34566666655543 223345677889999999999999988754 6666899999999999997744 4888999999
Q ss_pred EEccCccccccchh-hhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecCHHhHH--HhcCCCC
Q 002780 575 LNMKNTLVRELPVE-IRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLK--ELMKLRQ 651 (882)
Q Consensus 575 L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~--~l~~l~~ 651 (882)
|.|++|.+..+|.. |.+|++|+.|+|..|.+.. .+ --.|..|++|+.|.+..++...+. .+..|.+
T Consensus 202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri----------ve-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI----------VE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK 270 (873)
T ss_pred eecccCcccccCHHHhhhcchhhhhhccccceee----------eh-hhhhcCchhhhhhhhhhcCcccccCcceeeecc
Confidence 99999999999965 5569999999999987641 11 123788999999999888655443 3678899
Q ss_pred CcEEEEEecCCCchhHHHHhccCCCCCEEEEeecCCccccccCCCCCCCCCccEEEeecc-CCCCCc-cccCCCCccEEE
Q 002780 652 LRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGN-MKKLPD-WIFKLKNLIRLG 729 (882)
Q Consensus 652 L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~lp~-~~~~l~~L~~L~ 729 (882)
++.|++..|+.... -..++.+++.|+.|+++.|.+... ....|.-.+ +|+.|+|+.| +..+++ .+..++.|+.|.
T Consensus 271 me~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~NaI~ri-h~d~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 271 MEHLNLETNRLQAV-NEGWLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQ-KLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred cceeecccchhhhh-hcccccccchhhhhccchhhhhee-ecchhhhcc-cceeEeccccccccCChhHHHHHHHhhhhc
Confidence 99999998765432 234677899999999999976433 345565444 9999999987 567764 566789999999
Q ss_pred EeecCCCcccchhhcCCCccceeEeecccCCCeEE---EccCCCcccceeEecccCCceeeE-EcCCCccCccEEEeecC
Q 002780 730 LDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFH---FEAGWFPKLQKLLLWEFKAVKSVI-IEKGAMPDIRELWIGPC 805 (882)
Q Consensus 730 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c 805 (882)
|++|.+....-..|..+.+|+.|+|+.|.+...+. ..+.++|+|+.|.+.+|+ ++.++ ..+..+++|++|+|.+|
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCC
Confidence 99999876666678889999999999987654433 345679999999999987 66665 45788999999999999
Q ss_pred CCcCcccccccccccCcEEEEe
Q 002780 806 PLLMEIPIGIEHLKNLKLLVFA 827 (882)
Q Consensus 806 ~~l~~lp~~l~~l~~L~~L~l~ 827 (882)
.....-|..|..+ .|++|.+.
T Consensus 427 aiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 427 AIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred cceeecccccccc-hhhhhhhc
Confidence 9766667888888 89988654
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=4.5e-21 Score=238.83 Aligned_cols=306 Identities=22% Similarity=0.268 Sum_probs=237.2
Q ss_pred cceeEEEEecCCCCCcccccccccCCceeeEEEecCCCCCCCccccCCccCCcEEEEecCC-CccccccccCCCCCcEEE
Q 002780 498 SKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTK-VKIIPTSIGNLLSLETLN 576 (882)
Q Consensus 498 ~~lr~L~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~-l~~lp~~i~~L~~L~~L~ 576 (882)
.++|.|.+.+.. ...++..| .+.+|+.|+|+++.+..+|..+..+++|++|+|+++. ++.+|. ++.+++|++|+
T Consensus 589 ~~Lr~L~~~~~~---l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYP---LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCC---CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 457777775543 22333444 5689999999999999999999999999999999875 778885 88999999999
Q ss_pred ccCc-cccccchhhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecCH-HhHHHhcCCCCCcE
Q 002780 577 MKNT-LVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADS-QVLKELMKLRQLRM 654 (882)
Q Consensus 577 L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~-~~~~~l~~l~~L~~ 654 (882)
|++| .+..+|..+.++++|++|++++|. ....+|.++ ++++|+.|.+.+|.. ..++. ...+|+.
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~-----------~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~ 729 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCE-----------NLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--ISTNISW 729 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCC-----------CcCccCCcC-CCCCCCEEeCCCCCCcccccc--ccCCcCe
Confidence 9998 789999999999999999999864 234677766 789999999998842 11121 2468899
Q ss_pred EEEEecCCCchhHHHHhccCCCCCEEEEeecCCcccc----cc-CCCCCCCCCccEEEeecc--CCCCCccccCCCCccE
Q 002780 655 LSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEML----DL-QSLSSPPQYLQRLHLTGN--MKKLPDWIFKLKNLIR 727 (882)
Q Consensus 655 L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~----~l-~~l~~~~~~L~~L~l~~~--~~~lp~~~~~l~~L~~ 727 (882)
|++.++... .++..+ .+++|.+|.+..+...... .+ ......+++|+.|++++| ...+|.+++++++|+.
T Consensus 730 L~L~~n~i~--~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 730 LDLDETAIE--EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred eecCCCccc--cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 999876543 234333 5788888888764321110 01 011122348999999987 4679999999999999
Q ss_pred EEEeecCCCcccchhhcCCCccceeEeecccCCCeEEEccCCCcccceeEecccCCceeeEEcCCCccCccEEEeecCCC
Q 002780 728 LGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPL 807 (882)
Q Consensus 728 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 807 (882)
|+|++|......+..+ .+++|+.|++++|.....++. ..++|+.|+|++|. ++.+|..++.+++|+.|++++|+.
T Consensus 807 L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~-i~~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 807 LEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTG-IEEVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred EECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCC-CccChHHHhcCCCCCEEECCCCCC
Confidence 9999986444444333 799999999999876554432 34789999999875 678888899999999999999999
Q ss_pred cCcccccccccccCcEEEEecCh
Q 002780 808 LMEIPIGIEHLKNLKLLVFAGMV 830 (882)
Q Consensus 808 l~~lp~~l~~l~~L~~L~l~~~~ 830 (882)
+..+|..+..+++|+.+++++|+
T Consensus 882 L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 882 LQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCccCcccccccCCCeeecCCCc
Confidence 99999999999999999999996
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=3.9e-24 Score=215.56 Aligned_cols=321 Identities=22% Similarity=0.266 Sum_probs=178.2
Q ss_pred ccccCCceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCe
Q 002780 518 ASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRY 597 (882)
Q Consensus 518 ~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 597 (882)
+.++.+..|..|+..+|++.++|.+++.+..|..|++.+|+++.+|+..-+++.|++||...|.++.+|..++.|.+|..
T Consensus 131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLEL 210 (565)
T ss_pred chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHH
Confidence 34445555555555555555555555555555555555555555555544455555555555555555655555556655
Q ss_pred eecccccccCCCchhhhhhhccccCcccCCcccccccceecCHHhH-HH-hcCCCCCcEEEEEecCCCchhHHHHhccCC
Q 002780 598 LMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVL-KE-LMKLRQLRMLSIRPQNGNGKDLCALITNLE 675 (882)
Q Consensus 598 L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~-~~-l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~ 675 (882)
|++..|++. .+| .|+.+..|.+|....+....+ .+ +.++++|..|+++.|+... .|..+..+.
T Consensus 211 LyL~~Nki~------------~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke--~Pde~clLr 275 (565)
T KOG0472|consen 211 LYLRRNKIR------------FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE--VPDEICLLR 275 (565)
T ss_pred HHhhhcccc------------cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc--CchHHHHhh
Confidence 555555433 344 455566666665555533322 22 3466666666666654443 455555666
Q ss_pred CCCEEEEeecCCccccccCCCCCCCCCccEEEeeccC-C--------------------------------------CCC
Q 002780 676 NLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNM-K--------------------------------------KLP 716 (882)
Q Consensus 676 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~--------------------------------------~lp 716 (882)
+|+.|++++|..+.... .+... +|+.|.+.||. . ..|
T Consensus 276 sL~rLDlSNN~is~Lp~--sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPY--SLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred hhhhhcccCCccccCCc--ccccc--eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 66677776665443221 11111 34444444331 0 001
Q ss_pred ccc----cCCCCccEEEEeecCCCcccchhhcCC--CccceeEeecccCC-----------------------CeEEEcc
Q 002780 717 DWI----FKLKNLIRLGLDLSGLTEEPIRVLQTL--PNLLELRFTGAYNY-----------------------ELFHFEA 767 (882)
Q Consensus 717 ~~~----~~l~~L~~L~L~~~~l~~~~~~~l~~l--~~L~~L~L~~~~~~-----------------------~~~~~~~ 767 (882)
.|. ....+.+.|+++.-+++..+-..|..- .-....++++|... ..++...
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHH
Confidence 111 012233444444333332221111110 01222333333221 1222234
Q ss_pred CCCcccceeEecccCCceeeEEcCCCccCccEEEeecCCCcCccc------------------------ccccccccCcE
Q 002780 768 GWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIP------------------------IGIEHLKNLKL 823 (882)
Q Consensus 768 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp------------------------~~l~~l~~L~~ 823 (882)
..+++|..|++++|. +..+|.+++.+-.|+.|+|++|.+ +.+| +++.++.+|..
T Consensus 432 ~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccch-hhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 567888889998774 788888888888899999988753 2223 34667777777
Q ss_pred EEEecChHHHHHhcccccccccccccceEEEEEeeccccccccccccCCCCHh
Q 002780 824 LVFAGMVKQVYYMTKDENWGKVTENIPDVLVTFMEAGQLFHYRKDILSSLSPE 876 (882)
Q Consensus 824 L~l~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~L~~l~l~~N~~~~~~p~~ 876 (882)
|++.+| -++.||.++.++++|+.|++++|++. .|+.
T Consensus 510 LDL~nN---------------dlq~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 510 LDLQNN---------------DLQQIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred eccCCC---------------chhhCChhhccccceeEEEecCCccC--CCHH
Confidence 777764 67899999999999999999999986 5554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=2e-24 Score=217.67 Aligned_cols=342 Identities=18% Similarity=0.207 Sum_probs=208.7
Q ss_pred ccccCCceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCe
Q 002780 518 ASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRY 597 (882)
Q Consensus 518 ~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 597 (882)
..+.....|+.|+.++|.+..+|++|+.+..|..|+..+|++..+|..++++..|..|++.+|.++.+|.....|+.|+|
T Consensus 108 ~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 108 EQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKH 187 (565)
T ss_pred HHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHh
Confidence 33444555555555555555555555555555555555555555555555555555555555555555555445666666
Q ss_pred eecccccccCCCchhhhhhhccccCcccCCcccccccceecCHHhHHHhcCCCCCcEEEEEecCCCchhHHH-HhccCCC
Q 002780 598 LMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKDLCA-LITNLEN 676 (882)
Q Consensus 598 L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~l~~l~~ 676 (882)
|+...|. ...+|+.++.|.+|+-|++..+....++++..+..|+.|++..|.+.. +++ ...++++
T Consensus 188 ld~~~N~------------L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~--lpae~~~~L~~ 253 (565)
T KOG0472|consen 188 LDCNSNL------------LETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEM--LPAEHLKHLNS 253 (565)
T ss_pred cccchhh------------hhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHh--hHHHHhccccc
Confidence 6655543 336777788888888888877766666677788888877777654332 333 3447788
Q ss_pred CCEEEEeecCCccccccCCCCCCCCCccEEEeecc-CCCCCccccCCCCccEEEEeecCCCcccch--------------
Q 002780 677 LETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGN-MKKLPDWIFKLKNLIRLGLDLSGLTEEPIR-------------- 741 (882)
Q Consensus 677 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~-------------- 741 (882)
|..|++..|...+... .+ ...++|+.|++++| +..+|..++++ +|+.|.+.+|.+...--+
T Consensus 254 l~vLDLRdNklke~Pd--e~-clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLr 329 (565)
T KOG0472|consen 254 LLVLDLRDNKLKEVPD--EI-CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLR 329 (565)
T ss_pred ceeeeccccccccCch--HH-HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHH
Confidence 8888888887655432 11 12226888888877 57788888888 888888888754321000
Q ss_pred ---------------------------hhcCCCccceeEeecccCCCeEEEc-------------c---------CCCc-
Q 002780 742 ---------------------------VLQTLPNLLELRFTGAYNYELFHFE-------------A---------GWFP- 771 (882)
Q Consensus 742 ---------------------------~l~~l~~L~~L~L~~~~~~~~~~~~-------------~---------~~~~- 771 (882)
....+.+.+.|++++-..+...... + ..++
T Consensus 330 s~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~ 409 (565)
T KOG0472|consen 330 SKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE 409 (565)
T ss_pred HhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence 0111223444444433222110000 0 0011
Q ss_pred --ccceeEecccCCceeeEEcCCCccCccEEEeecCCCcCcccccccccccCcEEEEecC----hHHHHHhccc----cc
Q 002780 772 --KLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGM----VKQVYYMTKD----EN 841 (882)
Q Consensus 772 --~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~----~~~~~~~~~~----~~ 841 (882)
.+.+..+..+..++.+|..+..+++|..|++++|. +..+|..++.+..|+.|+++.| .+.++..... ..
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtlla 488 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLA 488 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHh
Confidence 12222222233344455566789999999999776 7789999999999999999986 2233333222 22
Q ss_pred ccccccccceE-EEEEeeccccccccccccCCCCHhHHhh
Q 002780 842 WGKVTENIPDV-LVTFMEAGQLFHYRKDILSSLSPEYVEQ 880 (882)
Q Consensus 842 ~~~~~~~ip~~-~~~~~~L~~l~l~~N~~~~~~p~~~~~~ 880 (882)
.++.++.+|.. +.++.+|.+||+.+|.+ ..||+. ++|
T Consensus 489 s~nqi~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~-Lgn 526 (565)
T KOG0472|consen 489 SNNQIGSVDPSGLKNMRNLTTLDLQNNDL-QQIPPI-LGN 526 (565)
T ss_pred ccccccccChHHhhhhhhcceeccCCCch-hhCChh-hcc
Confidence 32467788777 88899999999999996 778876 444
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=5.1e-22 Score=220.41 Aligned_cols=339 Identities=22% Similarity=0.256 Sum_probs=218.4
Q ss_pred CCceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCeeecc
Q 002780 522 NFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVY 601 (882)
Q Consensus 522 ~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 601 (882)
+.-.|++||+++|.+..+|..|..+.+|+.|+++.|.|...|.+++++.+|++|.|.+|.+..+|.++..+++|++|+++
T Consensus 43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred heeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 34448888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cccccCCCchhhhhhhcccc--------CcccCCcccccccceec--CHHhHHHhcCCCCCcEEEEEecCCCchhHHHHh
Q 002780 602 QYHYTSGSSITEEAAVAKVR--------GGFGSLTNLQKLSIIEA--DSQVLKELMKLRQLRMLSIRPQNGNGKDLCALI 671 (882)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~p--------~~i~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l 671 (882)
+|.+...+..-+.......+ ..++... ++.+++..+ ....+.++..+++ .|+++.|.... ..+
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~----~dl 195 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV----LDL 195 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh----hhh
Confidence 88776432211100000000 0011111 222222222 2333344444444 46666554331 112
Q ss_pred ccCC--------------------CCCEEEEeecCCccccccCCCCCCCCCccEEEeecc-CCCCCccccCCCCccEEEE
Q 002780 672 TNLE--------------------NLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGN-MKKLPDWIFKLKNLIRLGL 730 (882)
Q Consensus 672 ~~l~--------------------~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~lp~~~~~l~~L~~L~L 730 (882)
.++. +|+.|+.+.|.... ....+.|++|+.++++.+ +..+|+|++.+.+|+.|..
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~----~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~ 271 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT----LDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNA 271 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCccee----eccccccccceeeecchhhhhcchHHHHhcccceEecc
Confidence 2333 34444444443321 122345669999999987 6889999999999999999
Q ss_pred eecCCCcc----------------------cchhhcCCCccceeEeecccCCCeEEE-----------------------
Q 002780 731 DLSGLTEE----------------------PIRVLQTLPNLLELRFTGAYNYELFHF----------------------- 765 (882)
Q Consensus 731 ~~~~l~~~----------------------~~~~l~~l~~L~~L~L~~~~~~~~~~~----------------------- 765 (882)
.+|.++.. .++.++++.+|++|+|..|.+......
T Consensus 272 n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 272 NHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred cchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence 98876432 223345577888888887654332110
Q ss_pred --ccCCCcccceeEecccCCceeeEEcCCCccCccEEEeecCCCcCccc-ccccccccCcEEEEecCh-----HHHHH--
Q 002780 766 --EAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIP-IGIEHLKNLKLLVFAGMV-----KQVYY-- 835 (882)
Q Consensus 766 --~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~-----~~~~~-- 835 (882)
.-..++.|+.|.+.+|.........+.++++|+.|+|++|. +..+| ..+.+++.|++|+++||. .....
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~ 430 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLG 430 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhh
Confidence 11235678888888887666554556788999999999887 55666 457788899999999873 11111
Q ss_pred hccc-ccccccccccceEEEEEeeccccccccccccCCC
Q 002780 836 MTKD-ENWGKVTENIPDVLVTFMEAGQLFHYRKDILSSL 873 (882)
Q Consensus 836 ~~~~-~~~~~~~~~ip~~~~~~~~L~~l~l~~N~~~~~~ 873 (882)
++.. .-++|.+.+.| .+.+++.|+.+|+|.|++....
T Consensus 431 ~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred hhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhh
Confidence 1111 22224677889 5678889999999999986554
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=1e-20 Score=210.16 Aligned_cols=218 Identities=20% Similarity=0.155 Sum_probs=122.6
Q ss_pred ccccccceecC-HHhHHHhcCCCCCcEEEEEecCCCchhHHHHhccCCCCCEEEEeecCCccccccCCCCCCCCCccEEE
Q 002780 629 NLQKLSIIEAD-SQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLH 707 (882)
Q Consensus 629 ~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~ 707 (882)
+|+.++++.+. ...++.++.+.+|+.+.+..|.. ..++..+....+|+.|.+..|...-..+ ...+. ++|++|+
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l--~~lp~ri~~~~~L~~l~~~~nel~yip~--~le~~-~sL~tLd 316 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRL--VALPLRISRITSLVSLSAAYNELEYIPP--FLEGL-KSLRTLD 316 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhH--HhhHHHHhhhhhHHHHHhhhhhhhhCCC--ccccc-ceeeeee
Confidence 45666666553 23445677788888887776654 2334444444455555544443322111 01111 1444444
Q ss_pred eecc-CCCCCcc------------------------cc--CCCCccEEEEeecCCCcccchhhcCCCccceeEeecccCC
Q 002780 708 LTGN-MKKLPDW------------------------IF--KLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNY 760 (882)
Q Consensus 708 l~~~-~~~lp~~------------------------~~--~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 760 (882)
|..| +..+|.. .+ .++.|+.|++.+|.+++...+.+.++++|+.|+|++|++.
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 4433 2222221 11 1345667777777777777777777777777777777665
Q ss_pred CeEEEccCCCcccceeEecccCCceeeEEcCCCccCccEEEeecCCCcCcccccccccccCcEEEEecChHHHHHhcccc
Q 002780 761 ELFHFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGMVKQVYYMTKDE 840 (882)
Q Consensus 761 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 840 (882)
.........++.|+.|+|++|. ++.+|....+++.|++|...+|. +..+| .+..++.|+.++++.|.-
T Consensus 397 ~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L--------- 464 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNL--------- 464 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchh---------
Confidence 5444445667777777777765 56666666667777777666555 44566 666777777777776530
Q ss_pred cccccccccceEEEEEeecccccccccc
Q 002780 841 NWGKVTENIPDVLVTFMEAGQLFHYRKD 868 (882)
Q Consensus 841 ~~~~~~~~ip~~~~~~~~L~~l~l~~N~ 868 (882)
....+-.+.|. ++|++||+++|.
T Consensus 465 ~~~~l~~~~p~-----p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 465 SEVTLPEALPS-----PNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhCCC-----cccceeeccCCc
Confidence 00001122232 677777777776
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=2.6e-17 Score=189.87 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=58.2
Q ss_pred eeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCeeeccccc
Q 002780 525 LIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYH 604 (882)
Q Consensus 525 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 604 (882)
.-.+|+|+++.++.+|..+. .+|+.|++.+|+++.+|.. +++|++|++++|.+..+|.. .++|++|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 35578888888888888776 4788999988888888863 57888899988888888853 4678888888876
Q ss_pred cc
Q 002780 605 YT 606 (882)
Q Consensus 605 ~~ 606 (882)
+.
T Consensus 274 L~ 275 (788)
T PRK15387 274 LT 275 (788)
T ss_pred hh
Confidence 54
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=1.9e-15 Score=174.56 Aligned_cols=239 Identities=19% Similarity=0.160 Sum_probs=122.6
Q ss_pred eeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCeeeccccc
Q 002780 525 LIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYH 604 (882)
Q Consensus 525 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 604 (882)
+|+.|++++|+++.+|.. +++|++|+|++|+++.+|.. ..+|+.|++++|.+..+|.. ..+|+.|++++|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQ 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCc
Confidence 566677777777766642 45677777777777766643 34666777777766666642 2456666776665
Q ss_pred ccCCCchhhhhhhccccCcccCCcccccccceecCHHhHHHhcCCCCCcEEEEEecCCCchhHHHHhccCCCCCEEEEee
Q 002780 605 YTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEM 684 (882)
Q Consensus 605 ~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~ 684 (882)
+. .+|.. .++|+.|++.+|....++.+ ..+|+.|.+++|.+.. ++. -..+|+.|++++
T Consensus 294 Lt------------~LP~~---p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~--LP~---lp~~Lq~LdLS~ 351 (788)
T PRK15387 294 LT------------SLPVL---PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTS--LPT---LPSGLQELSVSD 351 (788)
T ss_pred cc------------ccccc---ccccceeECCCCccccCCCC--cccccccccccCcccc--ccc---cccccceEecCC
Confidence 44 23321 23455555554422111111 1234444444443321 111 113566666666
Q ss_pred cCCccccccCCCCCCCCCccEEEeecc-CCCCCccccCCCCccEEEEeecCCCcccchhhcCCCccceeEeecccCCCeE
Q 002780 685 TSKEEMLDLQSLSSPPQYLQRLHLTGN-MKKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELF 763 (882)
Q Consensus 685 ~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 763 (882)
|.+.... ..+.+|+.|++++| +..+|.. ..+|+.|+|++|.++..+. ..++|+.|++++|.+.. +
T Consensus 352 N~Ls~LP------~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~Lss-I 417 (788)
T PRK15387 352 NQLASLP------TLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTS-L 417 (788)
T ss_pred CccCCCC------CCCcccceehhhccccccCccc---ccccceEEecCCcccCCCC----cccCCCEEEccCCcCCC-C
Confidence 6543211 12235666666555 3445532 2356666666666543221 12456666666665443 2
Q ss_pred EEccCCCcccceeEecccCCceeeEEcCCCccCccEEEeecCCCcCccc
Q 002780 764 HFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIP 812 (882)
Q Consensus 764 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp 812 (882)
+. .+.+|+.|++++|. ++.+|..++.+++|+.|+|++|+.....|
T Consensus 418 P~---l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 418 PM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred Cc---chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCchHH
Confidence 21 13355566666554 34555555566666666666666544433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=6.1e-15 Score=171.79 Aligned_cols=242 Identities=17% Similarity=0.179 Sum_probs=118.9
Q ss_pred eeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCeeecccccc
Q 002780 526 IKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHY 605 (882)
Q Consensus 526 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 605 (882)
..+|+++++.++.+|..+. ++|+.|+|++|+++.+|..+. .+|++|++++|.+..+|..+. .+|+.|++++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 4556666666666665553 356666666666666666543 366666666666666665443 3566666666544
Q ss_pred cCCCchhhhhhhccccCcccCCcccccccceecCHHhHHHhcCCCCCcEEEEEecCCCchhHHHHhccCCCCCEEEEeec
Q 002780 606 TSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMT 685 (882)
Q Consensus 606 ~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 685 (882)
. .+|..+. .+|+.|++.++ .+.. ++..+ .++|+.|++++|
T Consensus 254 ~------------~LP~~l~--s~L~~L~Ls~N----------------------~L~~--LP~~l--~~sL~~L~Ls~N 293 (754)
T PRK15370 254 T------------ELPERLP--SALQSLDLFHN----------------------KISC--LPENL--PEELRYLSVYDN 293 (754)
T ss_pred C------------cCChhHh--CCCCEEECcCC----------------------ccCc--ccccc--CCCCcEEECCCC
Confidence 3 2332221 13333333322 1110 11111 123444444444
Q ss_pred CCccccccCCCCCCCCCccEEEeecc-CCCCCccccCCCCccEEEEeecCCCcccchhhcCCCccceeEeecccCCCeEE
Q 002780 686 SKEEMLDLQSLSSPPQYLQRLHLTGN-MKKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFH 764 (882)
Q Consensus 686 ~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 764 (882)
.+..... ..+.+|+.|++++| +..+|..+ .++|+.|++++|.++..+ ..+ .++|+.|++++|.+.. ++
T Consensus 294 ~Lt~LP~-----~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~-LP 362 (754)
T PRK15370 294 SIRTLPA-----HLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITV-LP 362 (754)
T ss_pred ccccCcc-----cchhhHHHHHhcCCccccCCccc--cccceeccccCCccccCC-hhh--cCcccEEECCCCCCCc-CC
Confidence 3322110 01124555555544 23344322 245666666666654422 112 2466666666665432 22
Q ss_pred EccCCCcccceeEecccCCceeeEEcCCCccCccEEEeecCCCcCcccccccc----cccCcEEEEecCh
Q 002780 765 FEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEH----LKNLKLLVFAGMV 830 (882)
Q Consensus 765 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~----l~~L~~L~l~~~~ 830 (882)
.. ..++|+.|+|++|. +..+|..+ .++|+.|++++|. +..+|..+.+ ++++..|++.+||
T Consensus 363 ~~--lp~~L~~LdLs~N~-Lt~LP~~l--~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 363 ET--LPPTITTLDVSRNA-LTNLPENL--PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hh--hcCCcCEEECCCCc-CCCCCHhH--HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 11 13566667776664 33444332 1356677777665 3345544333 3566777777765
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=2.3e-14 Score=166.93 Aligned_cols=75 Identities=20% Similarity=0.358 Sum_probs=40.6
Q ss_pred eeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCeeeccccc
Q 002780 525 LIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYH 604 (882)
Q Consensus 525 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 604 (882)
.|+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|+.|++++|.
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc
Confidence 45555666665555555443 355666666555555555432 245556665555555555443 355556555554
Q ss_pred c
Q 002780 605 Y 605 (882)
Q Consensus 605 ~ 605 (882)
+
T Consensus 274 L 274 (754)
T PRK15370 274 I 274 (754)
T ss_pred c
Confidence 3
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=3.9e-15 Score=133.64 Aligned_cols=150 Identities=26% Similarity=0.333 Sum_probs=69.1
Q ss_pred ceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCeeecccc
Q 002780 524 KLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQY 603 (882)
Q Consensus 524 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~ 603 (882)
.++..|-|++|.++.+|..|..+.+|+.|++.+|.|+++|.+|+.++.|++|+++-|.+..+|.+++.++.|..|++.+|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc
Confidence 33444444555554445555555555555555555555555555555555555544444445555555555555555444
Q ss_pred cccCCCchhhhhhhccccCcccCCcccccccceecCH-HhHHHhcCCCCCcEEEEEecCCCchhHHHHhccCCCCCEEEE
Q 002780 604 HYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADS-QVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTV 682 (882)
Q Consensus 604 ~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l 682 (882)
++. ...+|..|.-|+.|+.|.+.+++. ..+.+++++++|+.|.+..|... .++..++.+..|+.|++
T Consensus 113 nl~----------e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll--~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 113 NLN----------ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHI 180 (264)
T ss_pred ccc----------cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh--hCcHHHHHHHHHHHHhc
Confidence 443 123444444444444444444422 22334444444444444443221 13333444444444444
Q ss_pred eec
Q 002780 683 EMT 685 (882)
Q Consensus 683 ~~~ 685 (882)
.+|
T Consensus 181 qgn 183 (264)
T KOG0617|consen 181 QGN 183 (264)
T ss_pred ccc
Confidence 444
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=3.6e-15 Score=133.80 Aligned_cols=154 Identities=26% Similarity=0.390 Sum_probs=132.9
Q ss_pred cccceeEEEEecCCCCCcccccccccCCceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEE
Q 002780 496 KESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETL 575 (882)
Q Consensus 496 ~~~~lr~L~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 575 (882)
..+++..|.+.++.. ...++.+..+++|++|++++|+++++|.+|+.++.||.|++.-|++..+|..++.++-|+.|
T Consensus 31 ~~s~ITrLtLSHNKl---~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKL---TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCce---eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 445555566555432 34556788999999999999999999999999999999999999999999999999999999
Q ss_pred EccCccc--cccchhhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecC-HHhHHHhcCCCCC
Q 002780 576 NMKNTLV--RELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEAD-SQVLKELMKLRQL 652 (882)
Q Consensus 576 ~L~~~~l--~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L 652 (882)
||.+|++ ..+|-.+..|..|+.|+++.|.|. .+|..++++++||.|.+.+++ ...+.+++.++.|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe------------~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~l 175 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE------------ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRL 175 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc------------cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHH
Confidence 9998854 579999999999999999998765 689999999999999999885 5678899999999
Q ss_pred cEEEEEecCCCc
Q 002780 653 RMLSIRPQNGNG 664 (882)
Q Consensus 653 ~~L~l~~~~~~~ 664 (882)
+.|+|.+|....
T Consensus 176 relhiqgnrl~v 187 (264)
T KOG0617|consen 176 RELHIQGNRLTV 187 (264)
T ss_pred HHHhcccceeee
Confidence 999999876543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.39 E-value=5.1e-14 Score=152.71 Aligned_cols=109 Identities=19% Similarity=0.033 Sum_probs=53.5
Q ss_pred CCCccEEEEeecCCCcccc----hhhcCCCccceeEeecccCCCeEEEc-c----CCCcccceeEecccCCce----eeE
Q 002780 722 LKNLIRLGLDLSGLTEEPI----RVLQTLPNLLELRFTGAYNYELFHFE-A----GWFPKLQKLLLWEFKAVK----SVI 788 (882)
Q Consensus 722 l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~~~~~~~-~----~~~~~L~~L~l~~~~~l~----~~~ 788 (882)
+++|+.|+|++|.+.+... ..+..+++|++|++++|...+..... . ...+.|++|++++|.... .+.
T Consensus 192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 271 (319)
T cd00116 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA 271 (319)
T ss_pred CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH
Confidence 3455555555555443221 22334555666666655443210000 0 123566677776665321 112
Q ss_pred EcCCCccCccEEEeecCCCcCc----cccccccc-ccCcEEEEecCh
Q 002780 789 IEKGAMPDIRELWIGPCPLLME----IPIGIEHL-KNLKLLVFAGMV 830 (882)
Q Consensus 789 ~~~~~~~~L~~L~l~~c~~l~~----lp~~l~~l-~~L~~L~l~~~~ 830 (882)
.....+++|+.|++++|..... +...+... +.|++|++.++|
T Consensus 272 ~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 272 EVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 2234456777777777775432 23333333 567777776654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=9.8e-15 Score=148.14 Aligned_cols=254 Identities=18% Similarity=0.208 Sum_probs=140.4
Q ss_pred cccccccccCCceeeEEEecCCCCCCC-ccccCCccCCcEEEEec-CCCcccccc-ccCCCCCcEEEccCccccccch-h
Q 002780 513 DSFMNASIANFKLIKVLDLEDAPVDYL-PEGVGNLFNLHYLSLRN-TKVKIIPTS-IGNLLSLETLNMKNTLVRELPV-E 588 (882)
Q Consensus 513 ~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~-~~l~~lp~~-i~~L~~L~~L~L~~~~l~~lp~-~ 588 (882)
..+++..|+.++.||.|||++|.|+.+ |+.|..+..|-.|-+-+ |+|+.+|+. |++|..|+.|.+.-|.+..++. .
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 345667888888889999988888866 77788888887777666 778888876 7888888888888777776654 5
Q ss_pred hhcccccCeeecccccccCCCchhhhhhhccccC-cccCCcccccccceecCHH--------------hHHHhcCCCCCc
Q 002780 589 IRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRG-GFGSLTNLQKLSIIEADSQ--------------VLKELMKLRQLR 653 (882)
Q Consensus 589 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~--------------~~~~l~~l~~L~ 653 (882)
+..|++|..|.+..|.+. .++. .+..+.+++++.+..+... .+.+++......
T Consensus 160 l~dL~~l~lLslyDn~~q------------~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNKIQ------------SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred HHHhhhcchhcccchhhh------------hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 778888888888887654 3343 3666777777765544200 000111111111
Q ss_pred EEEEEe---cCCCchhHHHHhccCCCCCEEEEeecCCccccccCCCCCCCCCccEEEeecc-CCC-CCccccCCCCccEE
Q 002780 654 MLSIRP---QNGNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGN-MKK-LPDWIFKLKNLIRL 728 (882)
Q Consensus 654 ~L~l~~---~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~-lp~~~~~l~~L~~L 728 (882)
-..+.. +......+.. .++.+.+--.+.+......+...+...+ +|++|++++| +.. -+.||..+..++.|
T Consensus 228 p~rl~~~Ri~q~~a~kf~c---~~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLC---SLESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred hHHHHHHHhcccchhhhhh---hHHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccchhhhhhhcchhhhhhh
Confidence 001111 0011100100 0111110000111111111222233333 5666666655 222 23456666666666
Q ss_pred EEeecCCCcccchhhcCCCccceeEeecccCCCeEEEccCCCcccceeEecccC
Q 002780 729 GLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFK 782 (882)
Q Consensus 729 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 782 (882)
.|..|++....-..|.++..|+.|+|++|.+....+..+....+|.+|.+-.|+
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 666666544444455666666666666666655555555555556666665544
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=5.7e-14 Score=142.66 Aligned_cols=278 Identities=18% Similarity=0.165 Sum_probs=159.6
Q ss_pred eeEEEecCCCCCCCccc-cCCccCCcEEEEecCCCccc-cccccCCCCCcEEEccC-ccccccchh-hhcccccCeeecc
Q 002780 526 IKVLDLEDAPVDYLPEG-VGNLFNLHYLSLRNTKVKII-PTSIGNLLSLETLNMKN-TLVRELPVE-IRNLKKLRYLMVY 601 (882)
Q Consensus 526 Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~-~~l~~lp~~-i~~L~~L~~L~l~ 601 (882)
-..+.|..|.|+.+|+. |+.+++||.|+|++|.|+.+ |..|..|.+|.+|-+.+ |.+..+|++ |.+|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 45678888888888654 88888888888888888866 67788888887776655 688888865 6778888888777
Q ss_pred cccccCCCchhhhhhhccccCcccCCcccccccceecCHHhHH--HhcCCCCCcEEEEEecCCCchhHHHHhccCCCCCE
Q 002780 602 QYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLK--ELMKLRQLRMLSIRPQNGNGKDLCALITNLENLET 679 (882)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~ 679 (882)
-|++.. .....+..|++|..|.+.++....+. .+..+..++.+.+..|.... ..+++.+..
T Consensus 149 an~i~C-----------ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla~ 211 (498)
T KOG4237|consen 149 ANHINC-----------IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLAD 211 (498)
T ss_pred hhhhcc-----------hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc------ccccchhhh
Confidence 665431 22233566666666666665333222 24444445544444332111 111111111
Q ss_pred EEEeecCCccccccCCCCCCCCCccEEEeecc-CCCCCcc-c-cCCCCccEEEEeecCCC-cccchhhcCCCccceeEee
Q 002780 680 LTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGN-MKKLPDW-I-FKLKNLIRLGLDLSGLT-EEPIRVLQTLPNLLELRFT 755 (882)
Q Consensus 680 L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~lp~~-~-~~l~~L~~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~ 755 (882)
..-... ..+.... ......+... ...++.- + ..+..+.+=-.+.|... ..+...|..||+|+.|+|+
T Consensus 212 ~~a~~~--------ietsgar-c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 212 DLAMNP--------IETSGAR-CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred HHhhch--------hhcccce-ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 000000 0000000 0111111110 0111110 0 01111211112233322 2344567888888888888
Q ss_pred cccCCCeEEEccCCCcccceeEecccCCceee-EEcCCCccCccEEEeecCCCcCcccccccccccCcEEEEecCh
Q 002780 756 GAYNYELFHFEAGWFPKLQKLLLWEFKAVKSV-IIEKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGMV 830 (882)
Q Consensus 756 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 830 (882)
+|.+...-...+.+...++.|.|..|+ +..+ ...+.++..|+.|+|.+|....--|..|..+.+|.+|++.+||
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 888777666677777888888888876 3333 3345677788888888888666567777788888888887766
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=1.7e-13 Score=148.72 Aligned_cols=252 Identities=16% Similarity=0.113 Sum_probs=135.4
Q ss_pred EEecCCCCC--CCccccCCccCCcEEEEecCCCc-----cccccccCCCCCcEEEccCccccc-------cchhhhcccc
Q 002780 529 LDLEDAPVD--YLPEGVGNLFNLHYLSLRNTKVK-----IIPTSIGNLLSLETLNMKNTLVRE-------LPVEIRNLKK 594 (882)
Q Consensus 529 L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~l~~-------lp~~i~~L~~ 594 (882)
|+|.++.++ ..+..+..+.+|++|+++++.++ .++..+...++|++|+++++.+.. ++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 556666654 34445556666777777777763 355556666667777776664432 2234445556
Q ss_pred cCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecCHHhHHHhcCCCCCcEEEEEecCCCchh---HHHHh
Q 002780 595 LRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKD---LCALI 671 (882)
Q Consensus 595 L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---l~~~l 671 (882)
|++|++++|.+.. ..+..+ ..+...++|+.|+++++...... +...+
T Consensus 83 L~~L~l~~~~~~~-----------~~~~~~-------------------~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l 132 (319)
T cd00116 83 LQELDLSDNALGP-----------DGCGVL-------------------ESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132 (319)
T ss_pred eeEEEccCCCCCh-----------hHHHHH-------------------HHHhccCcccEEEeeCCccchHHHHHHHHHH
Confidence 6666666544331 000001 11110133555555554333211 12223
Q ss_pred ccC-CCCCEEEEeecCCccccccCCCCCCCCCccEEEeeccCCCCCccccCCCCccEEEEeecCCCcccc----hhhcCC
Q 002780 672 TNL-ENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNMKKLPDWIFKLKNLIRLGLDLSGLTEEPI----RVLQTL 746 (882)
Q Consensus 672 ~~l-~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~----~~l~~l 746 (882)
..+ ++|+.|++++|.+.... ...++..+..+++|++|++++|.+.+... ..+..+
T Consensus 133 ~~~~~~L~~L~L~~n~l~~~~--------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~ 192 (319)
T cd00116 133 KDLPPALEKLVLGRNRLEGAS--------------------CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192 (319)
T ss_pred HhCCCCceEEEcCCCcCCchH--------------------HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC
Confidence 333 44444444444221100 01233345566778888888888764332 234456
Q ss_pred CccceeEeecccCCCe----EEEccCCCcccceeEecccCCceeeEEcC-----CCccCccEEEeecCCCc----Ccccc
Q 002780 747 PNLLELRFTGAYNYEL----FHFEAGWFPKLQKLLLWEFKAVKSVIIEK-----GAMPDIRELWIGPCPLL----MEIPI 813 (882)
Q Consensus 747 ~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----~~~~~L~~L~l~~c~~l----~~lp~ 813 (882)
++|+.|++++|.+.+. +...+..+++|++|++++|+........+ ...+.|++|++++|... ..++.
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 272 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence 7888888888765432 12234467888888888876432111111 12468888888888753 22344
Q ss_pred cccccccCcEEEEecCh
Q 002780 814 GIEHLKNLKLLVFAGMV 830 (882)
Q Consensus 814 ~l~~l~~L~~L~l~~~~ 830 (882)
.+..+++|+++++++|.
T Consensus 273 ~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 273 VLAEKESLLELDLRGNK 289 (319)
T ss_pred HHhcCCCccEEECCCCC
Confidence 55666888888888874
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.23 E-value=5.8e-12 Score=149.37 Aligned_cols=269 Identities=25% Similarity=0.275 Sum_probs=165.9
Q ss_pred cccccceeEEEEecCCCCCcccccccccCCceeeEEEecCCC--CCCCccc-cCCccCCcEEEEecCC-CccccccccCC
Q 002780 494 SIKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAP--VDYLPEG-VGNLFNLHYLSLRNTK-VKIIPTSIGNL 569 (882)
Q Consensus 494 ~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~--i~~lp~~-i~~l~~Lr~L~L~~~~-l~~lp~~i~~L 569 (882)
.......|...+.++.... . ..-.+++.|+.|-+.+|. +..++.. |..+++|++|||++|. +.+||.+|++|
T Consensus 519 ~~~~~~~rr~s~~~~~~~~---~-~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEH---I-AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred ccchhheeEEEEeccchhh---c-cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 3444566776666554311 1 112345578899888886 5556544 7789999999999764 78999999999
Q ss_pred CCCcEEEccCccccccchhhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecC----HHhHHH
Q 002780 570 LSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEAD----SQVLKE 645 (882)
Q Consensus 570 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~----~~~~~~ 645 (882)
.+|++|+++++.+..+|.++.+|++|.+|++..+... ..+|.....|.+|++|.+.... ...+.+
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l-----------~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e 663 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL-----------ESIPGILLELQSLRVLRLPRSALSNDKLLLKE 663 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhhheecccccccc-----------ccccchhhhcccccEEEeeccccccchhhHHh
Confidence 9999999999999999999999999999999874322 2335555568888888776552 444555
Q ss_pred hcCCCCCcEEEEEecCCCchhHHHHhccCCCCCEEEEeecCCccccccCCCCCCCCCccEEEeecc-CCCCCccccCCCC
Q 002780 646 LMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGN-MKKLPDWIFKLKN 724 (882)
Q Consensus 646 l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~lp~~~~~l~~ 724 (882)
+..+.+|+.+.+..... ....-+..+..|.++ .+.+.+.++ ....+..+..+.+
T Consensus 664 l~~Le~L~~ls~~~~s~---~~~e~l~~~~~L~~~----------------------~~~l~~~~~~~~~~~~~~~~l~~ 718 (889)
T KOG4658|consen 664 LENLEHLENLSITISSV---LLLEDLLGMTRLRSL----------------------LQSLSIEGCSKRTLISSLGSLGN 718 (889)
T ss_pred hhcccchhhheeecchh---HhHhhhhhhHHHHHH----------------------hHhhhhcccccceeecccccccC
Confidence 66666666666543211 011111122222211 111121111 1234445667788
Q ss_pred ccEEEEeecCCCcccchhh-----c-CCCccceeEeecccCCCeEEEccCCCcccceeEecccCCceeeEEcCCCccCcc
Q 002780 725 LIRLGLDLSGLTEEPIRVL-----Q-TLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIR 798 (882)
Q Consensus 725 L~~L~L~~~~l~~~~~~~l-----~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 798 (882)
|+.|.+.+|.......... . .++++..+.+.+|+....+. .....|+|+.|.+.+|..++.+......+..++
T Consensus 719 L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~-~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~ 797 (889)
T KOG4658|consen 719 LEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT-WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK 797 (889)
T ss_pred cceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc-hhhccCcccEEEEecccccccCCCHHHHhhhcc
Confidence 8888888887654322221 1 14455555555665444332 223568999999999887776654444555555
Q ss_pred EEEee
Q 002780 799 ELWIG 803 (882)
Q Consensus 799 ~L~l~ 803 (882)
.+.+.
T Consensus 798 ~~i~~ 802 (889)
T KOG4658|consen 798 ELILP 802 (889)
T ss_pred cEEec
Confidence 43333
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.4e-11 Score=119.30 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=103.4
Q ss_pred cCCcccccccceec--CHHhHHHhcCCCCCcEEEEEe-cCCCchhHHHHhccCCCCCEEEEeecCCccccccCCCCCCCC
Q 002780 625 GSLTNLQKLSIIEA--DSQVLKELMKLRQLRMLSIRP-QNGNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQ 701 (882)
Q Consensus 625 ~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~-~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~ 701 (882)
..+.+|+.|++.+. +......+.+-.+|+.|+++. +.++..++...+.+|+.|..|+++||.......-........
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 33444444444444 334455677778888888888 566777777778899999999999997665443222333344
Q ss_pred CccEEEeeccCC-----CCCccccCCCCccEEEEeecC-CCcccchhhcCCCccceeEeecccCCC-eEEEccCCCcccc
Q 002780 702 YLQRLHLTGNMK-----KLPDWIFKLKNLIRLGLDLSG-LTEEPIRVLQTLPNLLELRFTGAYNYE-LFHFEAGWFPKLQ 774 (882)
Q Consensus 702 ~L~~L~l~~~~~-----~lp~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~L~ 774 (882)
+|..|+++|+.. .+..-...+|+|..|+|+.|. ++......+.+++.|++|.++.||... .....+...|+|.
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLV 366 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceE
Confidence 899999999742 222233568999999998885 444555667788888888888887542 1222344556666
Q ss_pred eeEeccc
Q 002780 775 KLLLWEF 781 (882)
Q Consensus 775 ~L~l~~~ 781 (882)
+|++.+|
T Consensus 367 yLdv~g~ 373 (419)
T KOG2120|consen 367 YLDVFGC 373 (419)
T ss_pred EEEeccc
Confidence 6666555
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=1.7e-09 Score=102.84 Aligned_cols=84 Identities=21% Similarity=0.350 Sum_probs=25.0
Q ss_pred cCCceeeEEEecCCCCCCCccccC-CccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhh-cccccCee
Q 002780 521 ANFKLIKVLDLEDAPVDYLPEGVG-NLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIR-NLKKLRYL 598 (882)
Q Consensus 521 ~~~~~Lr~L~L~~~~i~~lp~~i~-~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L 598 (882)
.+...+|.|+|+++.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++|.+..++..+. .+++|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34456777888888777663 344 5677888888888877775 47777888888888887777765553 57788888
Q ss_pred eccccccc
Q 002780 599 MVYQYHYT 606 (882)
Q Consensus 599 ~l~~~~~~ 606 (882)
++++|.+.
T Consensus 94 ~L~~N~I~ 101 (175)
T PF14580_consen 94 YLSNNKIS 101 (175)
T ss_dssp E-TTS---
T ss_pred ECcCCcCC
Confidence 88777665
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=1.3e-10 Score=123.87 Aligned_cols=156 Identities=24% Similarity=0.304 Sum_probs=116.4
Q ss_pred cccccCCceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccC
Q 002780 517 NASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLR 596 (882)
Q Consensus 517 ~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 596 (882)
+..+..|-.|..|.|+.|.+..+|..++++..|.||+|+.|.+..+|..++.|+ |+.|-+++|+++.+|..|+.+..|.
T Consensus 91 p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLA 169 (722)
T ss_pred chHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHH
Confidence 344556667777888888888888888888888888888888888888777764 7788888888888888888778888
Q ss_pred eeecccccccCCCchhhhhhhccccCcccCCcccccccceecC-HHhHHHhcCCCCCcEEEEEecCCCchhHHHHhccCC
Q 002780 597 YLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEAD-SQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLE 675 (882)
Q Consensus 597 ~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~ 675 (882)
+|+.+.|.+. .+|..++.+.+|+.|.+..+. ...+.++..|+ |..|++++|++.. ++..+.+|+
T Consensus 170 ~ld~s~nei~------------slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~--iPv~fr~m~ 234 (722)
T KOG0532|consen 170 HLDVSKNEIQ------------SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISY--LPVDFRKMR 234 (722)
T ss_pred Hhhhhhhhhh------------hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceee--cchhhhhhh
Confidence 8888876543 577778888888888777663 34556666444 7788888776554 566677888
Q ss_pred CCCEEEEeecCCc
Q 002780 676 NLETLTVEMTSKE 688 (882)
Q Consensus 676 ~L~~L~l~~~~~~ 688 (882)
+|+.|-|.+|.+.
T Consensus 235 ~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 235 HLQVLQLENNPLQ 247 (722)
T ss_pred hheeeeeccCCCC
Confidence 8888888877543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=2.1e-09 Score=120.07 Aligned_cols=107 Identities=23% Similarity=0.391 Sum_probs=88.3
Q ss_pred ccCCceeeEEEecCCCCCCCccccCCcc-CCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCee
Q 002780 520 IANFKLIKVLDLEDAPVDYLPEGVGNLF-NLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYL 598 (882)
Q Consensus 520 ~~~~~~Lr~L~L~~~~i~~lp~~i~~l~-~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 598 (882)
+..++.+..|++.++.+.++|..++.+. +|++|++++|.+..+|..++.+++|+.|++++|.+..+|...+.+++|+.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3455789999999999999999888885 999999999999999888999999999999999999999887789999999
Q ss_pred ecccccccCCCchhhhhhhccccCcccCCcccccccceec
Q 002780 599 MVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEA 638 (882)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~ 638 (882)
++++|.+. .+|..++.+..|++|.+..+
T Consensus 192 ~ls~N~i~------------~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 192 DLSGNKIS------------DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eccCCccc------------cCchhhhhhhhhhhhhhcCC
Confidence 99998665 45555545555666666555
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=8e-10 Score=114.58 Aligned_cols=164 Identities=21% Similarity=0.201 Sum_probs=99.4
Q ss_pred CccccCCccCCcEEEEecCCCccccc--cccCCCCCcEEEccCcccc---ccchhhhcccccCeeecccccccCCCchhh
Q 002780 539 LPEGVGNLFNLHYLSLRNTKVKIIPT--SIGNLLSLETLNMKNTLVR---ELPVEIRNLKKLRYLMVYQYHYTSGSSITE 613 (882)
Q Consensus 539 lp~~i~~l~~Lr~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~ 613 (882)
+..-=.+++.||...|+++.+...+. ....|++++.|||++|.+. .+-.-+..|++|+.|+++.|.+..+
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~----- 187 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF----- 187 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC-----
Confidence 33334567788888888888776663 5667888888888887443 3334456788888888888765421
Q ss_pred hhhhccccCcccCCcccccccceecCHHhHHHhcCCCCCcEEEEEecCCCchhHHHHhccCCCCCEEEEeecCCcccccc
Q 002780 614 EAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEMLDL 693 (882)
Q Consensus 614 ~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l 693 (882)
+++.. + ..+++|+.|.++.+..+.......+..+++|+.|++..|......
T Consensus 188 ----------~~s~~---~--------------~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-- 238 (505)
T KOG3207|consen 188 ----------ISSNT---T--------------LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-- 238 (505)
T ss_pred ----------ccccc---h--------------hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee--
Confidence 11100 0 045567777777777777677777777888888888877411110
Q ss_pred CCCCCCCCCccEEEeecc-CCCCC--ccccCCCCccEEEEeecCCC
Q 002780 694 QSLSSPPQYLQRLHLTGN-MKKLP--DWIFKLKNLIRLGLDLSGLT 736 (882)
Q Consensus 694 ~~l~~~~~~L~~L~l~~~-~~~lp--~~~~~l~~L~~L~L~~~~l~ 736 (882)
..-...++.|++|+|++| +-.++ ...+.++.|..|+++.|.+.
T Consensus 239 ~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 239 ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc
Confidence 111112235666666665 22233 23455666666666666554
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=4.8e-10 Score=119.74 Aligned_cols=192 Identities=24% Similarity=0.295 Sum_probs=142.5
Q ss_pred CceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCeeeccc
Q 002780 523 FKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQ 602 (882)
Q Consensus 523 ~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 602 (882)
+..-...||+.|.+..+|..++.+..|..|.|..|.+..+|..+++|..|.+|||+.|.+..+|..++.|+ |+.|-+++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 34455689999999999999999999999999999999999999999999999999999999999998886 99999999
Q ss_pred ccccCCCchhhhhhhccccCcccCCcccccccceecCH-HhHHHhcCCCCCcEEEEEecCCCchhHHHHhccCCCCCEEE
Q 002780 603 YHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADS-QVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLT 681 (882)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~ 681 (882)
|+++ .+|..++.+..|..|+.+.|.. ..+..++.+..|+.|.+..|.... ++..+.
T Consensus 153 Nkl~------------~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--lp~El~--------- 209 (722)
T KOG0532|consen 153 NKLT------------SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--LPEELC--------- 209 (722)
T ss_pred Cccc------------cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--CCHHHh---------
Confidence 8765 6788888888888888877743 345566666666666665542211 222222
Q ss_pred EeecCCccccccCCCCCCCCCccEEEeecc-CCCCCccccCCCCccEEEEeecCCCcccchhh---cCCCccceeEeecc
Q 002780 682 VEMTSKEEMLDLQSLSSPPQYLQRLHLTGN-MKKLPDWIFKLKNLIRLGLDLSGLTEEPIRVL---QTLPNLLELRFTGA 757 (882)
Q Consensus 682 l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l---~~l~~L~~L~L~~~ 757 (882)
.+ .|.+|+++.| ...+|-.|..+..|++|.|.+|.+.. ++..+ |...-.++|+..-|
T Consensus 210 ----------------~L--pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 ----------------SL--PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ----------------CC--ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 11 3566666655 45677778888888888888888753 33222 33444556665544
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.73 E-value=2.3e-09 Score=108.33 Aligned_cols=141 Identities=17% Similarity=0.112 Sum_probs=72.7
Q ss_pred cCCCCCcEEEEEecCC---CchhHHHHhccCCCCCEEEEeecCCccccccCCCCCCCCCccEEEeeccCCCCCccccCCC
Q 002780 647 MKLRQLRMLSIRPQNG---NGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNMKKLPDWIFKLK 723 (882)
Q Consensus 647 ~~l~~L~~L~l~~~~~---~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~lp~~~~~l~ 723 (882)
.+-++|+.+....|.. ....+...+...+.|+.+.+..|....... .-+-..+..++
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~--------------------~al~eal~~~~ 213 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV--------------------TALAEALEHCP 213 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh--------------------HHHHHHHHhCC
Confidence 3456677776666532 223344455556666666666554321110 01112344556
Q ss_pred CccEEEEeecCCCcccc----hhhcCCCccceeEeecccCCCeEEEc-----cCCCcccceeEecccCCceee----EEc
Q 002780 724 NLIRLGLDLSGLTEEPI----RVLQTLPNLLELRFTGAYNYELFHFE-----AGWFPKLQKLLLWEFKAVKSV----IIE 790 (882)
Q Consensus 724 ~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~~----~~~ 790 (882)
+|+.|+|..|.++.... ..+..+|+|+.|++++|.....-... ...+|+|+.|.+.+|.....- ...
T Consensus 214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~ 293 (382)
T KOG1909|consen 214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC 293 (382)
T ss_pred cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence 66666666665543222 22344556666666665443321111 123677777777776543221 112
Q ss_pred CCCccCccEEEeecCCC
Q 002780 791 KGAMPDIRELWIGPCPL 807 (882)
Q Consensus 791 ~~~~~~L~~L~l~~c~~ 807 (882)
....|.|++|+|++|..
T Consensus 294 ~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcchhhHHhcCCcccc
Confidence 34478888888888874
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.6e-09 Score=110.84 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=38.8
Q ss_pred cCCcccccccceecCHHhH---HHhcCCCCCcEEEEEecCC-CchhHHHHhccCCCCCEEEEeecCC
Q 002780 625 GSLTNLQKLSIIEADSQVL---KELMKLRQLRMLSIRPQNG-NGKDLCALITNLENLETLTVEMTSK 687 (882)
Q Consensus 625 ~~l~~L~~L~l~~~~~~~~---~~l~~l~~L~~L~l~~~~~-~~~~l~~~l~~l~~L~~L~l~~~~~ 687 (882)
.++.+|+...+.++....+ .....|++++.|+++.|-+ ....+......+++|+.|+++.|.+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL 184 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence 4566777776666633222 2455677777888777532 2334555666777777777777654
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=1.6e-08 Score=96.36 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=54.8
Q ss_pred cccceeEEEEecCCCCCccccccccc-CCceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccc-cCCCCCc
Q 002780 496 KESKVRSVFLFNVDKLPDSFMNASIA-NFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSI-GNLLSLE 573 (882)
Q Consensus 496 ~~~~lr~L~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i-~~L~~L~ 573 (882)
++.++|.|.+.++.-. .+ ..+. .+.+|++|+|++|.+..++ .+..+++|+.|++++|.|+.++..+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~---~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS---TI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccc---cc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3445666666555431 11 2233 5788999999999999886 5888999999999999999997665 4699999
Q ss_pred EEEccCccccccc--hhhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceec
Q 002780 574 TLNMKNTLVRELP--VEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEA 638 (882)
Q Consensus 574 ~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~ 638 (882)
+|++++|.+..+- ..+..+++|++|++.+|+++... .--...+..+++|+.|+...+
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~--------~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK--------NYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST--------THHHHHHHH-TT-SEETTEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh--------hHHHHHHHHcChhheeCCEEc
Confidence 9999999877654 35778999999999999887321 001112566777887777665
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=4.1e-09 Score=103.73 Aligned_cols=104 Identities=26% Similarity=0.311 Sum_probs=56.4
Q ss_pred cCCCCCEEEEeecCCccccccCCCCCCCCCccEEEeecc-CCCCCccccCCCCccEEEEeecCCCcccchhhcCCCccce
Q 002780 673 NLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGN-MKKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLE 751 (882)
Q Consensus 673 ~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 751 (882)
-.+.++.|+++.|....... +...+ +|+.|++++| +.++-.|-..+.|++.|.|+.|.+. .++.+++|-+|..
T Consensus 305 L~Pkir~L~lS~N~i~~v~n---La~L~-~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvn 378 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTVQN---LAELP-QLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVN 378 (490)
T ss_pred hccceeEEeccccceeeehh---hhhcc-cceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhhee
Confidence 34555555555554433222 22222 5666666665 3455556666777777777777652 3455666677777
Q ss_pred eEeecccCCCe-EEEccCCCcccceeEecccC
Q 002780 752 LRFTGAYNYEL-FHFEAGWFPKLQKLLLWEFK 782 (882)
Q Consensus 752 L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 782 (882)
|++++|.+... -....|.+|+|+.|.|.+|+
T Consensus 379 LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 379 LDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 77776654321 11233445555555555444
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.61 E-value=3.3e-09 Score=107.26 Aligned_cols=242 Identities=16% Similarity=0.174 Sum_probs=152.9
Q ss_pred ccCCCCCcEEEccCcccc-----ccchhhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecCH
Q 002780 566 IGNLLSLETLNMKNTLVR-----ELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADS 640 (882)
Q Consensus 566 i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~ 640 (882)
+.....++.|+|++|.++ .+.+.+.+.++|+..+++.-. ++. ....+|.. | .
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR-------~~~Ei~e~------L---------~ 82 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGR-------LKDEIPEA------L---------K 82 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCC-------cHHHHHHH------H---------H
Confidence 445667777777777554 233445566666666665421 100 01112211 1 1
Q ss_pred HhHHHhcCCCCCcEEEEEecCCCc---hhHHHHhccCCCCCEEEEeecCCccccc-----------cCCCCCCCCCccEE
Q 002780 641 QVLKELMKLRQLRMLSIRPQNGNG---KDLCALITNLENLETLTVEMTSKEEMLD-----------LQSLSSPPQYLQRL 706 (882)
Q Consensus 641 ~~~~~l~~l~~L~~L~l~~~~~~~---~~l~~~l~~l~~L~~L~l~~~~~~~~~~-----------l~~l~~~~~~L~~L 706 (882)
...+.|..+++|++|+++.|.+.. ..+...+.++..|++|.+.+|.+..... .....+.++.|+.+
T Consensus 83 ~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 83 MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 123456677789999999875543 3456677889999999999987643210 11222333389999
Q ss_pred EeeccC-CC-----CCccccCCCCccEEEEeecCCCcccc----hhhcCCCccceeEeecccCCCe----EEEccCCCcc
Q 002780 707 HLTGNM-KK-----LPDWIFKLKNLIRLGLDLSGLTEEPI----RVLQTLPNLLELRFTGAYNYEL----FHFEAGWFPK 772 (882)
Q Consensus 707 ~l~~~~-~~-----lp~~~~~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~ 772 (882)
....|. .. +-..+...+.|+.+.+..|.+..... ..+..+|+|+.|+|.+|.++.. +...+..+|+
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 888773 32 22345667899999999998754332 4567899999999998866543 2223456788
Q ss_pred cceeEecccCCceeeEEc-----CCCccCccEEEeecCCCcCc----ccccccccccCcEEEEecCh
Q 002780 773 LQKLLLWEFKAVKSVIIE-----KGAMPDIRELWIGPCPLLME----IPIGIEHLKNLKLLVFAGMV 830 (882)
Q Consensus 773 L~~L~l~~~~~l~~~~~~-----~~~~~~L~~L~l~~c~~l~~----lp~~l~~l~~L~~L~l~~~~ 830 (882)
|+.|++++|..-..-... ....|+|+.|.+.+|..... +...+...+.|..|+|++|.
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 999999998643222111 13488999999999986442 23345567889999999884
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=2.8e-08 Score=111.03 Aligned_cols=197 Identities=29% Similarity=0.343 Sum_probs=121.7
Q ss_pred EEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCC-CCcEEEccCccccccchhhhcccccCeeeccccccc
Q 002780 528 VLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLL-SLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYT 606 (882)
Q Consensus 528 ~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~-~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 606 (882)
.|++..+.+..-+..+..+..+..|++.++.++.+|...+.+. +|+.|+++++.+..+|..+..+++|+.|++++|.++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5677777765555556666788888888888888888777775 888888888888888777888888888888887654
Q ss_pred CCCchhhhhhhccccCcccCCcccccccceecCHHhHHHhcCCCCCcEEEEEecCCCchhHHHHhccCCCCCEEEEeecC
Q 002780 607 SGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMTS 686 (882)
Q Consensus 607 ~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 686 (882)
.+|...+.+++|+.|.+.++....++. .+....+|+.|.++.|.
T Consensus 177 ------------~l~~~~~~~~~L~~L~ls~N~i~~l~~------------------------~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 177 ------------DLPKLLSNLSNLNNLDLSGNKISDLPP------------------------EIELLSALEELDLSNNS 220 (394)
T ss_pred ------------hhhhhhhhhhhhhheeccCCccccCch------------------------hhhhhhhhhhhhhcCCc
Confidence 444444455555555555543222221 11223334444444442
Q ss_pred CccccccCCCCCCCCCccEEEeeccC-CCCCccccCCCCccEEEEeecCCCcccchhhcCCCccceeEeecccCCCeEEE
Q 002780 687 KEEMLDLQSLSSPPQYLQRLHLTGNM-KKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHF 765 (882)
Q Consensus 687 ~~~~~~l~~l~~~~~~L~~L~l~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 765 (882)
..... ..+.... ++..|.+.++. ..++..++.+++|++|++++|.++.... ++.+.+|+.|+++++......+.
T Consensus 221 ~~~~~--~~~~~~~-~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 221 IIELL--SSLSNLK-NLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ceecc--hhhhhcc-cccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 11110 1111111 34444444442 3346677778888888888888754333 77788888888887766554443
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=1.7e-08 Score=99.46 Aligned_cols=127 Identities=23% Similarity=0.223 Sum_probs=63.6
Q ss_pred CCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCeeecccccccCCCchhhhhhhccccCcccCC
Q 002780 548 NLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSL 627 (882)
Q Consensus 548 ~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l 627 (882)
.|..|+|++|.|+.+-+++.-++.++.|++++|.+..+-. +..|++|++|++++|.++. +...-.++
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~------------~~Gwh~KL 351 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE------------CVGWHLKL 351 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh------------hhhhHhhh
Confidence 3555555555555555555555555555555555444442 4455555555555544331 11111234
Q ss_pred cccccccceecCHHhHHHhcCCCCCcEEEEEecCCCchhHHHHhccCCCCCEEEEeecCC
Q 002780 628 TNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSK 687 (882)
Q Consensus 628 ~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 687 (882)
.|.++|.+..+....+.+++++-+|..|+++.|++..-.-...+++++.|+.|.+.+|..
T Consensus 352 GNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred cCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 444555555554444555555555556666555443333334556666666666665543
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.45 E-value=7.8e-09 Score=106.82 Aligned_cols=278 Identities=18% Similarity=0.158 Sum_probs=143.3
Q ss_pred eeeEEEecCCCCC---CCccccCCccCCcEEEEecCC-Cc--cccccccCCCCCcEEEccCc-cccccc-h-hhhccccc
Q 002780 525 LIKVLDLEDAPVD---YLPEGVGNLFNLHYLSLRNTK-VK--IIPTSIGNLLSLETLNMKNT-LVRELP-V-EIRNLKKL 595 (882)
Q Consensus 525 ~Lr~L~L~~~~i~---~lp~~i~~l~~Lr~L~L~~~~-l~--~lp~~i~~L~~L~~L~L~~~-~l~~lp-~-~i~~L~~L 595 (882)
.||.|.++|+.-. .+-..-.++++++.|++.+|. ++ .+-.--..+.+|++|++..| .+...- . -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4777788877532 333334567777777887765 33 12222335778888888776 444322 1 23457888
Q ss_pred CeeecccccccCCCchhhhhhhccccCcccCCcccccccceecCHHhHHHh----cCCCCCcEEEEEe-cCCCchhHHHH
Q 002780 596 RYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKEL----MKLRQLRMLSIRP-QNGNGKDLCAL 670 (882)
Q Consensus 596 ~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l----~~l~~L~~L~l~~-~~~~~~~l~~~ 670 (882)
.+|+++.+..-. ...+..-...+.+++.+.+.+|.....+.+ ..+..+.++++.. +..+...+...
T Consensus 219 ~~lNlSwc~qi~---------~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 219 KYLNLSWCPQIS---------GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHhhhccCchhh---------cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 888888754321 112222234455566665555532222222 1223333444333 23333333333
Q ss_pred hccCCCCCEEEEeecCCccccccCCCCCCCCCccEEEeeccCCCCCccccCCCCccEEEEeecC-CCcccchhhc-CCCc
Q 002780 671 ITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNMKKLPDWIFKLKNLIRLGLDLSG-LTEEPIRVLQ-TLPN 748 (882)
Q Consensus 671 l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~lp~~~~~l~~L~~L~L~~~~-l~~~~~~~l~-~l~~ 748 (882)
-..+..|+.|..+++...+...+..+.. ++++|+.|.++.|+ ++......++ +.+.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~----------------------~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQ----------------------HCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhc----------------------CCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 3344555555555443332222222222 34555555555554 2222222332 3556
Q ss_pred cceeEeecccCCCe--EEEccCCCcccceeEecccCCceee-----EEcCCCccCccEEEeecCCCcCc-cccccccccc
Q 002780 749 LLELRFTGAYNYEL--FHFEAGWFPKLQKLLLWEFKAVKSV-----IIEKGAMPDIRELWIGPCPLLME-IPIGIEHLKN 820 (882)
Q Consensus 749 L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~l~~c~~l~~-lp~~l~~l~~ 820 (882)
|+.+++.++..+.. +.....+.|.|+.|.+++|..++.- ...-.++..|+.+.+++|+.+.. .-..+.++++
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 66666665533221 2222345677777777766554432 22224567788888888886542 2345566778
Q ss_pred CcEEEEecChHHH
Q 002780 821 LKLLVFAGMVKQV 833 (882)
Q Consensus 821 L~~L~l~~~~~~~ 833 (882)
|+.+++.+|..-+
T Consensus 428 Leri~l~~~q~vt 440 (483)
T KOG4341|consen 428 LERIELIDCQDVT 440 (483)
T ss_pred cceeeeechhhhh
Confidence 8888888885433
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=2.6e-08 Score=111.40 Aligned_cols=193 Identities=22% Similarity=0.256 Sum_probs=87.3
Q ss_pred ceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCeeecccc
Q 002780 524 KLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQY 603 (882)
Q Consensus 524 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~ 603 (882)
..+..+++..+.+..+-..++.+.+|.+|++.+|.|..+...+..+.+|++|++++|.+..+. ++..++.|+.|++++|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 334444455554444333445555555555555555554443455555555555555555554 4444555555555555
Q ss_pred cccCCCchhhhhhhccccCcccCCcccccccceecCHHhHHH--hcCCCCCcEEEEEecCCCchhHHHHhccCCCCCEEE
Q 002780 604 HYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKE--LMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLT 681 (882)
Q Consensus 604 ~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~ 681 (882)
.+... .++..+++|+.+++.++....++. +..+.+|+.+.+..|..... ..+..+..+..++
T Consensus 151 ~i~~~-------------~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i---~~~~~~~~l~~~~ 214 (414)
T KOG0531|consen 151 LISDI-------------SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI---EGLDLLKKLVLLS 214 (414)
T ss_pred cchhc-------------cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc---cchHHHHHHHHhh
Confidence 44311 123334555555555554333333 34555555555555432221 1111222222234
Q ss_pred EeecCCccccccCCCCCCCCCccEEEeeccC-CCCCccccCCCCccEEEEeecCC
Q 002780 682 VEMTSKEEMLDLQSLSSPPQYLQRLHLTGNM-KKLPDWIFKLKNLIRLGLDLSGL 735 (882)
Q Consensus 682 l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~lp~~~~~l~~L~~L~L~~~~l 735 (882)
+..|......++...... +|+.+++.++. ...+..+..+.++..|++.++++
T Consensus 215 l~~n~i~~~~~l~~~~~~--~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 215 LLDNKISKLEGLNELVML--HLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred cccccceeccCcccchhH--HHHHHhcccCccccccccccccccccccchhhccc
Confidence 443332222111111100 25666666653 33334455566666666666654
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=5.8e-07 Score=105.19 Aligned_cols=82 Identities=24% Similarity=0.489 Sum_probs=72.8
Q ss_pred eeeEEEecCCCCC-CCccccCCccCCcEEEEecCCCc-cccccccCCCCCcEEEccCcccc-ccchhhhcccccCeeecc
Q 002780 525 LIKVLDLEDAPVD-YLPEGVGNLFNLHYLSLRNTKVK-IIPTSIGNLLSLETLNMKNTLVR-ELPVEIRNLKKLRYLMVY 601 (882)
Q Consensus 525 ~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~ 601 (882)
.++.|+|++|.+. .+|..|+++++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999987 78889999999999999999987 88988999999999999999664 788889999999999999
Q ss_pred ccccc
Q 002780 602 QYHYT 606 (882)
Q Consensus 602 ~~~~~ 606 (882)
+|.+.
T Consensus 499 ~N~l~ 503 (623)
T PLN03150 499 GNSLS 503 (623)
T ss_pred CCccc
Confidence 98766
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=5e-07 Score=70.46 Aligned_cols=56 Identities=32% Similarity=0.503 Sum_probs=28.5
Q ss_pred eeeEEEecCCCCCCCcc-ccCCccCCcEEEEecCCCccccc-cccCCCCCcEEEccCc
Q 002780 525 LIKVLDLEDAPVDYLPE-GVGNLFNLHYLSLRNTKVKIIPT-SIGNLLSLETLNMKNT 580 (882)
Q Consensus 525 ~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~ 580 (882)
+|++|++++|.+..+|. .|..+++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35555555555555542 34555555555555555554433 3455555555555544
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=6.7e-07 Score=69.73 Aligned_cols=59 Identities=39% Similarity=0.547 Sum_probs=52.6
Q ss_pred cCCcEEEEecCCCccccc-cccCCCCCcEEEccCccccccch-hhhcccccCeeecccccc
Q 002780 547 FNLHYLSLRNTKVKIIPT-SIGNLLSLETLNMKNTLVRELPV-EIRNLKKLRYLMVYQYHY 605 (882)
Q Consensus 547 ~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 605 (882)
++|++|++++|+++.+|. .+..+++|++|++++|.+..+|. .+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 479999999999999985 58899999999999999999885 578999999999999753
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.27 E-value=1.9e-08 Score=104.10 Aligned_cols=253 Identities=21% Similarity=0.193 Sum_probs=147.8
Q ss_pred cCCcEEEEecCC---CccccccccCCCCCcEEEccCc-cccccc-hh-hhcccccCeeecccccccCCCchhhhhhhccc
Q 002780 547 FNLHYLSLRNTK---VKIIPTSIGNLLSLETLNMKNT-LVRELP-VE-IRNLKKLRYLMVYQYHYTSGSSITEEAAVAKV 620 (882)
Q Consensus 547 ~~Lr~L~L~~~~---l~~lp~~i~~L~~L~~L~L~~~-~l~~lp-~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 620 (882)
-.||.|+++|+. ...+-....+++|+++|++.+| ++..-- .+ -..+++|+||++..+..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~--------------- 202 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS--------------- 202 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch---------------
Confidence 357788888864 2234344566788888888777 333211 11 23456677776655211
Q ss_pred cCcccCCcccccccceecCHHhHH-HhcCCCCCcEEEEEec-CCCchhHHHHhccCCCCCEEEEeecCCccccccCCCCC
Q 002780 621 RGGFGSLTNLQKLSIIEADSQVLK-ELMKLRQLRMLSIRPQ-NGNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSS 698 (882)
Q Consensus 621 p~~i~~l~~L~~L~l~~~~~~~~~-~l~~l~~L~~L~l~~~-~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~ 698 (882)
+ ....++ ....+++|++|+++++ .+....+.....+++.++.+...+|...+...+.....
T Consensus 203 ---------i--------T~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 203 ---------I--------TDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAA 265 (483)
T ss_pred ---------h--------HHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhc
Confidence 0 111112 1224566677777663 33334444555666667777666664433322222222
Q ss_pred CCCCccEEEeeccC--CCCCcc--ccCCCCccEEEEeecCC-Ccccchhhc-CCCccceeEeecccCCCe--EEEccCCC
Q 002780 699 PPQYLQRLHLTGNM--KKLPDW--IFKLKNLIRLGLDLSGL-TEEPIRVLQ-TLPNLLELRFTGAYNYEL--FHFEAGWF 770 (882)
Q Consensus 699 ~~~~L~~L~l~~~~--~~lp~~--~~~l~~L~~L~L~~~~l-~~~~~~~l~-~l~~L~~L~L~~~~~~~~--~~~~~~~~ 770 (882)
...-+.++++..+. +..--| -..+..|+.|+.++|.. +......++ +.++|+.|.+.+|..-.. +.....+.
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 22235555555542 111112 23478899999998864 333444444 689999999998864222 22223567
Q ss_pred cccceeEecccCCceee--EEcCCCccCccEEEeecCCCcCcc-----cccccccccCcEEEEecChH
Q 002780 771 PKLQKLLLWEFKAVKSV--IIEKGAMPDIRELWIGPCPLLMEI-----PIGIEHLKNLKLLVFAGMVK 831 (882)
Q Consensus 771 ~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~~~~ 831 (882)
+.|+.+++..|...... ...-.++|.|++|.++.|...... ..+-..+..|..+++++||.
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 89999999988654432 233457999999999999866532 23344567799999999983
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=1.4e-07 Score=105.52 Aligned_cols=222 Identities=20% Similarity=0.250 Sum_probs=141.6
Q ss_pred cccCCceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCee
Q 002780 519 SIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYL 598 (882)
Q Consensus 519 ~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 598 (882)
.+..++.|..|++.+|.|..+...+..+++|++|++++|.|+.+.. +..+..|+.|++++|.+..++ .+..+++|+.+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 3677899999999999999888778899999999999999998854 788888999999999888887 56679999999
Q ss_pred ecccccccCCCchhhhhhhccccCc-ccCCcccccccceecCHHhHHHhcCCCCCcEEEEEecCCCchhHHHHhccCC--
Q 002780 599 MVYQYHYTSGSSITEEAAVAKVRGG-FGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLE-- 675 (882)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~-- 675 (882)
++++|.+.. +... ...+.+|+.+.+..+....+..+..+..+..+++..|.+.. ...+..+.
T Consensus 168 ~l~~n~i~~------------ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~---~~~l~~~~~~ 232 (414)
T KOG0531|consen 168 DLSYNRIVD------------IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISK---LEGLNELVML 232 (414)
T ss_pred cCCcchhhh------------hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhccccccee---ccCcccchhH
Confidence 999987652 2221 46778888888888865555555555555555555443322 11111222
Q ss_pred CCCEEEEeecCCccccccCCCCCCCCCccEEEeeccCCCCCccccCCCCccEEEEeecCCCcc----cchhhcCCCccce
Q 002780 676 NLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNMKKLPDWIFKLKNLIRLGLDLSGLTEE----PIRVLQTLPNLLE 751 (882)
Q Consensus 676 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~ 751 (882)
+|+.++++.+...... ..+.... .+..|++..+...--..+...+.+..+.+..+.+... ........+++..
T Consensus 233 ~L~~l~l~~n~i~~~~--~~~~~~~-~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (414)
T KOG0531|consen 233 HLRELYLSGNRISRSP--EGLENLK-NLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVT 309 (414)
T ss_pred HHHHHhcccCcccccc--ccccccc-cccccchhhccccccccccccchHHHhccCcchhcchhhhhccccccccccccc
Confidence 3788888877655431 1222222 5666666654211111223344444555555443211 1111344566666
Q ss_pred eEeecccCC
Q 002780 752 LRFTGAYNY 760 (882)
Q Consensus 752 L~L~~~~~~ 760 (882)
+.+..++..
T Consensus 310 ~~~~~~~~~ 318 (414)
T KOG0531|consen 310 LTLELNPIR 318 (414)
T ss_pred cccccCccc
Confidence 666655443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.5e-07 Score=93.13 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=83.1
Q ss_pred eeeEEEecCCCCC--CCccccCCccCCcEEEEecCCCc-cccccccCCCCCcEEEccCc-cccccc--hhhhcccccCee
Q 002780 525 LIKVLDLEDAPVD--YLPEGVGNLFNLHYLSLRNTKVK-IIPTSIGNLLSLETLNMKNT-LVRELP--VEIRNLKKLRYL 598 (882)
Q Consensus 525 ~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~-~l~~lp--~~i~~L~~L~~L 598 (882)
.|+.|||+...|+ .+..-+..+..|+.|+|.|+.+. .+-..|.+-.+|+.|+|+.| .+.+.. --+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666777777665 44444556667777777776655 44445666677777777766 444332 234566677777
Q ss_pred ecccccccCCCchhhhhhhccccCcccCCcccccccceecC----HHhHHH-hcCCCCCcEEEEEecCCCchhHHHHhcc
Q 002780 599 MVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEAD----SQVLKE-LMKLRQLRMLSIRPQNGNGKDLCALITN 673 (882)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~----~~~~~~-l~~l~~L~~L~l~~~~~~~~~l~~~l~~ 673 (882)
+++.|..... ....+-..++ .+|..|+++++. ...+.. ...+++|..|+++.+..........+.+
T Consensus 266 NlsWc~l~~~-------~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 266 NLSWCFLFTE-------KVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred CchHhhccch-------hhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 7766543310 0000111111 244555555541 122222 2356677777777644333345555666
Q ss_pred CCCCCEEEEeecCC
Q 002780 674 LENLETLTVEMTSK 687 (882)
Q Consensus 674 l~~L~~L~l~~~~~ 687 (882)
++.|++|+++.|..
T Consensus 337 f~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYD 350 (419)
T ss_pred cchheeeehhhhcC
Confidence 66667776666643
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=8.1e-07 Score=87.97 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=64.7
Q ss_pred cccCCceeeEEEecCCCCC---CCccccCCccCCcEEEEecCCCc----cccccccCCCCCcEEEccCcc--ccccchhh
Q 002780 519 SIANFKLIKVLDLEDAPVD---YLPEGVGNLFNLHYLSLRNTKVK----IIPTSIGNLLSLETLNMKNTL--VRELPVEI 589 (882)
Q Consensus 519 ~~~~~~~Lr~L~L~~~~i~---~lp~~i~~l~~Lr~L~L~~~~l~----~lp~~i~~L~~L~~L~L~~~~--l~~lp~~i 589 (882)
+-..+..++.|||.+|.|+ ++-.-+.+|++|++|+|+.|.+. .+| ..+.+|++|-|.++. ....-..+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhh
Confidence 3456788999999999987 34445678899999999998755 444 356789999998884 34556667
Q ss_pred hcccccCeeeccccccc
Q 002780 590 RNLKKLRYLMVYQYHYT 606 (882)
Q Consensus 590 ~~L~~L~~L~l~~~~~~ 606 (882)
..+|+++.|+++.|++.
T Consensus 143 ~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSLR 159 (418)
T ss_pred hcchhhhhhhhccchhh
Confidence 78899999999887543
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=2e-06 Score=100.76 Aligned_cols=111 Identities=18% Similarity=0.103 Sum_probs=85.7
Q ss_pred CccEEEeeccC--CCCCccccCCCCccEEEEeecCCCcccchhhcCCCccceeEeecccCCCeEEEccCCCcccceeEec
Q 002780 702 YLQRLHLTGNM--KKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLW 779 (882)
Q Consensus 702 ~L~~L~l~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 779 (882)
.++.|+|+++. +.+|..+..+++|+.|+|++|.+.+..+..++.+++|+.|+|++|.+...++..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36777887762 5778888888888888888888887777788888888888888888877777777888888888888
Q ss_pred ccCCceeeEEcCCCc-cCccEEEeecCCCcCccc
Q 002780 780 EFKAVKSVIIEKGAM-PDIRELWIGPCPLLMEIP 812 (882)
Q Consensus 780 ~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~lp 812 (882)
+|.....+|..++.. .++..+++.+|+.+-..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 887766777666543 456778888777655444
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.01 E-value=2.5e-07 Score=101.87 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=24.5
Q ss_pred EEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCeeecccccc
Q 002780 552 LSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHY 605 (882)
Q Consensus 552 L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 605 (882)
-+.++|.+..+-.++.-++.|+.|||++|++.... .+..+++|+||++++|.+
T Consensus 169 a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 169 ASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred hhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchh
Confidence 33334444444444444445555555555444443 444455555555555443
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=6.1e-06 Score=58.74 Aligned_cols=39 Identities=36% Similarity=0.606 Sum_probs=19.6
Q ss_pred CCcEEEEecCCCccccccccCCCCCcEEEccCccccccc
Q 002780 548 NLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELP 586 (882)
Q Consensus 548 ~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp 586 (882)
+|++|++++|+|+.+|..+++|++|++|++++|.+..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455555555555555555555555555555555554443
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=8.4e-06 Score=58.05 Aligned_cols=41 Identities=34% Similarity=0.459 Sum_probs=28.7
Q ss_pred ceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccc
Q 002780 524 KLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPT 564 (882)
Q Consensus 524 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~ 564 (882)
++|++|++++|.|+.+|..|++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 35777777777777777777777777777777777776653
No 52
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.96 E-value=0.00014 Score=90.88 Aligned_cols=215 Identities=18% Similarity=0.206 Sum_probs=129.7
Q ss_pred HHHHHHHHHhC--CceEEEEEecCCChh--hHH-HhHHhcCCCCCCcEEEEecCchHHH--hhhccCCCcceeecC----
Q 002780 208 ELITALRDHLK--DKSYMVVFDDVWKID--FWG-DVEHALLDNKKCSRIIVTTRHMNVA--KYCKSSSSVHVHELE---- 276 (882)
Q Consensus 208 ~~~~~l~~~L~--~kr~LlVLDdv~~~~--~~~-~l~~~l~~~~~gs~IivTTR~~~v~--~~~~~~~~~~~~~l~---- 276 (882)
.+...+-..+. +.+++|||||+...+ ... .+...+....++-++|||||...-. ....... ...++.
T Consensus 107 ~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~--~~~~l~~~~l 184 (903)
T PRK04841 107 SLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRD--QLLEIGSQQL 184 (903)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcC--cceecCHHhC
Confidence 34444444443 689999999996642 222 3333334445667898999984211 1111111 345555
Q ss_pred CCChHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCCChHHHHHHHHHhccccCCCCCh
Q 002780 277 TLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHL 356 (882)
Q Consensus 277 ~L~~~~~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~~w~~~l~~~~~~~~~~~~~ 356 (882)
+|+.+|+.++|.......- -.+...+|.+.|+|.|+++..++..+.....+.. .....+ .... .
T Consensus 185 ~f~~~e~~~ll~~~~~~~~--------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~---~~~~~~----~~~~-~ 248 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSPI--------EAAESSRLCDDVEGWATALQLIALSARQNNSSLH---DSARRL----AGIN-A 248 (903)
T ss_pred CCCHHHHHHHHHhccCCCC--------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchh---hhhHhh----cCCC-c
Confidence 9999999999987653321 1345678999999999999999887754332111 111111 1100 1
Q ss_pred hhHHHHHHh-ccCCCCcchhHHHhhccccCCCceechHHHHHHHHHcCccccCCCCCHHHHHHHHHHHHHhCCccccccc
Q 002780 357 KDCNRVLSE-GYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSKR 435 (882)
Q Consensus 357 ~~i~~~l~~-sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~~~~L~~~sll~~~~~ 435 (882)
..+...+.- -|+.||++.+..++..|+++. ++.+.+-.+ .. .+.+...+++|.+.+++.....
T Consensus 249 ~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~~~l------~~-------~~~~~~~L~~l~~~~l~~~~~~ 312 (903)
T PRK04841 249 SHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALIVRV------TG-------EENGQMRLEELERQGLFIQRMD 312 (903)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHHHHH------cC-------CCcHHHHHHHHHHCCCeeEeec
Confidence 234444433 378999999999999999873 443322211 11 1225778999999999754221
Q ss_pred CCCCcEeEeeccHHHHHHHHHHhh
Q 002780 436 DISGRARICQVHDLMHQIIIRKTE 459 (882)
Q Consensus 436 ~~~g~~~~~~mhdlv~dla~~~~~ 459 (882)
+ .+ ..|+.|++++++......
T Consensus 313 ~-~~--~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 313 D-SG--EWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred C-CC--CEEehhHHHHHHHHHHHH
Confidence 1 11 357889999999887653
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=4.8e-06 Score=97.06 Aligned_cols=81 Identities=23% Similarity=0.353 Sum_probs=36.8
Q ss_pred cCCceeeEEEecCCCCC--CCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccc--hhhhcccccC
Q 002780 521 ANFKLIKVLDLEDAPVD--YLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELP--VEIRNLKKLR 596 (882)
Q Consensus 521 ~~~~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~ 596 (882)
..+|.|+.|.+++-.+. ++-.-..++++|+.||+++|+++.+ ..+++|+|||+|.+++=.+..-+ .++.+|++|+
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 34444444444443332 2222233444555555555555544 34555555555555443222211 2345555556
Q ss_pred eeeccc
Q 002780 597 YLMVYQ 602 (882)
Q Consensus 597 ~L~l~~ 602 (882)
+||+|.
T Consensus 224 vLDIS~ 229 (699)
T KOG3665|consen 224 VLDISR 229 (699)
T ss_pred eeeccc
Confidence 665555
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=2.4e-06 Score=84.73 Aligned_cols=221 Identities=15% Similarity=0.128 Sum_probs=114.3
Q ss_pred CCcEEEEecCCCccccc--cc-cCCCCCcEEEccCcccc---ccchhhhcccccCeeecccccccCCCchhhhhhhcccc
Q 002780 548 NLHYLSLRNTKVKIIPT--SI-GNLLSLETLNMKNTLVR---ELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVR 621 (882)
Q Consensus 548 ~Lr~L~L~~~~l~~lp~--~i-~~L~~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p 621 (882)
-+..|.+.++.|...-. .+ ..++.+..|||.+|.+. ++..-+.+||.|+.|+++.|.+.+ ....+|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s--------~I~~lp 117 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS--------DIKSLP 117 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC--------ccccCc
Confidence 45566666766553322 12 23567788888887654 333445678888888888876653 112222
Q ss_pred CcccCCcccccccceecCHHhHHHhcCCCCCcEEEEEecCCCchhHHHHhccCCCCCEEEEeecCCcccc-ccCCCCCCC
Q 002780 622 GGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEML-DLQSLSSPP 700 (882)
Q Consensus 622 ~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~~~ 700 (882)
..+.+|+.|-+.+..........++..++.++.|+++.|+..... .-+...+..
T Consensus 118 -------------------------~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s 172 (418)
T KOG2982|consen 118 -------------------------LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS 172 (418)
T ss_pred -------------------------ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence 123345555554444444445556666777777777766432111 001111111
Q ss_pred CCccEEEeeccCCCCC----ccccCCCCccEEEEeecCCCcc-cchhhcCCCccceeEeecccCCCeE-EEccCCCcccc
Q 002780 701 QYLQRLHLTGNMKKLP----DWIFKLKNLIRLGLDLSGLTEE-PIRVLQTLPNLLELRFTGAYNYELF-HFEAGWFPKLQ 774 (882)
Q Consensus 701 ~~L~~L~l~~~~~~lp----~~~~~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~L~ 774 (882)
+.+.+|++.+|....- ....-+|++..+-+..|.+... .-.....+|.+-.|+|+.+.+...- .....+||+|.
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~ 252 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLV 252 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhh
Confidence 2455565555531110 0112356777777777765432 1223345666666777655443221 12345677777
Q ss_pred eeEecccCCceeeEEc------CCCccCccEEE
Q 002780 775 KLLLWEFKAVKSVIIE------KGAMPDIRELW 801 (882)
Q Consensus 775 ~L~l~~~~~l~~~~~~------~~~~~~L~~L~ 801 (882)
-|.+.+++.+..+... ++.+++++.|+
T Consensus 253 dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 253 DLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred eeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 7777777665544221 24455555554
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=7.8e-06 Score=95.32 Aligned_cols=147 Identities=22% Similarity=0.280 Sum_probs=82.5
Q ss_pred ceeeEEEecCCCCC--CCccccC-CccCCcEEEEecCCCc--cccccccCCCCCcEEEccCccccccchhhhcccccCee
Q 002780 524 KLIKVLDLEDAPVD--YLPEGVG-NLFNLHYLSLRNTKVK--IIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYL 598 (882)
Q Consensus 524 ~~Lr~L~L~~~~i~--~lp~~i~-~l~~Lr~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 598 (882)
.+|+.||++|...- .-|..+| .||.|+.|.+++-.+. ++-.-..+++||..||+|+|++..+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 56788888875532 3344444 4678888888885543 3444466778888888888888877 578888888888
Q ss_pred ecccccccCCCchhhhhhhccccCcccCCcccccccceecC---HH-h----HHHhcCCCCCcEEEEEecCCCchhHHHH
Q 002780 599 MVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEAD---SQ-V----LKELMKLRQLRMLSIRPQNGNGKDLCAL 670 (882)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~---~~-~----~~~l~~l~~L~~L~l~~~~~~~~~l~~~ 670 (882)
.+.+-.+.+. ..+ ..+.+|++|+.|+++... .. . ++--..||+|+.|+.+++......+...
T Consensus 201 ~mrnLe~e~~---------~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 201 SMRNLEFESY---------QDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred hccCCCCCch---------hhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 7766444311 001 123445555555555441 00 0 1112235555555555544444444444
Q ss_pred hccCCCCCEEE
Q 002780 671 ITNLENLETLT 681 (882)
Q Consensus 671 l~~l~~L~~L~ 681 (882)
+..-++|+.+.
T Consensus 271 l~sH~~L~~i~ 281 (699)
T KOG3665|consen 271 LNSHPNLQQIA 281 (699)
T ss_pred HHhCccHhhhh
Confidence 44444444443
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.70 E-value=2.5e-06 Score=83.48 Aligned_cols=249 Identities=18% Similarity=0.143 Sum_probs=130.6
Q ss_pred ccCCceeeEEEecCCCCC-----CCccccCCccCCcEEEEecC--C-Cc-cccc-------cccCCCCCcEEEccCcccc
Q 002780 520 IANFKLIKVLDLEDAPVD-----YLPEGVGNLFNLHYLSLRNT--K-VK-IIPT-------SIGNLLSLETLNMKNTLVR 583 (882)
Q Consensus 520 ~~~~~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~--~-l~-~lp~-------~i~~L~~L~~L~L~~~~l~ 583 (882)
+..+..+..+|||+|.|. .+...|.+-.+|+..+++.- . .. ++|. .+-+|++|++.+||.|-++
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344778889999999886 35566777788888888762 1 11 3333 3567889999999988332
Q ss_pred -ccc----hhhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecCHHhHHHhcCCCCCcEEEEE
Q 002780 584 -ELP----VEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIR 658 (882)
Q Consensus 584 -~lp----~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~ 658 (882)
+.| .-|++-..|.||.+++|.+.+. .+.+ |+ +.|++|. ......+-+.|+...+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~-------aG~r----ig--kal~~la-------~nKKaa~kp~Le~vicg 165 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPI-------AGGR----IG--KALFHLA-------YNKKAADKPKLEVVICG 165 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCcc-------chhH----HH--HHHHHHH-------HHhhhccCCCceEEEec
Confidence 333 3366778888998888654421 1111 11 1122221 01122344566666555
Q ss_pred ecCC---CchhHHHHhccCCCCCEEEEeecCCccccccCCCCCCCCCccEEEeeccCCCCCccccCCCCccEEEEeecCC
Q 002780 659 PQNG---NGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNMKKLPDWIFKLKNLIRLGLDLSGL 735 (882)
Q Consensus 659 ~~~~---~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~lp~~~~~l~~L~~L~L~~~~l 735 (882)
.|+. +.......+..-.+|+.+.+..|.+.... +..|-+ ..+..+++|+.|+|..|.+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpeg-----------v~~L~~--------~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEG-----------VTMLAF--------LGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcch-----------hHHHHH--------HHHHHhCcceeeeccccch
Confidence 5422 22222233333346666666665432110 000000 0122345566666665555
Q ss_pred Ccccch----hhcCCCccceeEeecccCCCeEE------EccCCCcccceeEecccCCceee-------EEcCCCccCcc
Q 002780 736 TEEPIR----VLQTLPNLLELRFTGAYNYELFH------FEAGWFPKLQKLLLWEFKAVKSV-------IIEKGAMPDIR 798 (882)
Q Consensus 736 ~~~~~~----~l~~l~~L~~L~L~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~l~~~-------~~~~~~~~~L~ 798 (882)
+..... .+...+.|+.|.+..|.....-. +.-..+|+|..|-+.+|..-..+ ....+++|-|.
T Consensus 227 t~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~ 306 (388)
T COG5238 227 TLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLV 306 (388)
T ss_pred hhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHH
Confidence 432222 22334556666666554332211 11123567777777666432221 12346788888
Q ss_pred EEEeecCCC
Q 002780 799 ELWIGPCPL 807 (882)
Q Consensus 799 ~L~l~~c~~ 807 (882)
.|.+.+|..
T Consensus 307 ~le~ngNr~ 315 (388)
T COG5238 307 DLERNGNRI 315 (388)
T ss_pred HHHHccCcc
Confidence 888888874
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=3.6e-05 Score=82.54 Aligned_cols=159 Identities=21% Similarity=0.299 Sum_probs=94.1
Q ss_pred ccCCceeeEEEecCCCCCCCccccCCccCCcEEEEecC-CCccccccccCCCCCcEEEccCc-cccccchhhhcccccCe
Q 002780 520 IANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNT-KVKIIPTSIGNLLSLETLNMKNT-LVRELPVEIRNLKKLRY 597 (882)
Q Consensus 520 ~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~ 597 (882)
+..++.++.|++++|.++.+|. + ..+|+.|.+++| .++.+|..+. .+|+.|++++| .+..+|. +|++
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence 4456889999999999888882 2 246999999885 4778887653 68999999998 8888885 4666
Q ss_pred eecccccccCCCchhhhhhhccccCcccCCcccccccceecCHHhHHHhc-CC-CCCcEEEEEecCCCchhHHHHhccCC
Q 002780 598 LMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELM-KL-RQLRMLSIRPQNGNGKDLCALITNLE 675 (882)
Q Consensus 598 L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~l~~~l~~l~ 675 (882)
|++..+... ....+|.+ |+.|.+..........+. .+ ++|+.|.+.++.... ++..+ ..
T Consensus 117 L~L~~n~~~---------~L~~LPss------Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~--LP~~L--P~ 177 (426)
T PRK15386 117 LEIKGSATD---------SIKNVPNG------LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII--LPEKL--PE 177 (426)
T ss_pred EEeCCCCCc---------ccccCcch------HhheeccccccccccccccccCCcccEEEecCCCccc--Ccccc--cc
Confidence 666654433 23455543 445554322111111111 12 578899988743221 22222 25
Q ss_pred CCCEEEEeecCCccc-cccCCCCCCCCCccEEEeeccC
Q 002780 676 NLETLTVEMTSKEEM-LDLQSLSSPPQYLQRLHLTGNM 712 (882)
Q Consensus 676 ~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~ 712 (882)
+|+.|.++.+..... ..... .|.++ .|.+.+++
T Consensus 178 SLk~L~ls~n~~~sLeI~~~s---LP~nl-~L~f~n~l 211 (426)
T PRK15386 178 SLQSITLHIEQKTTWNISFEG---FPDGL-DIDLQNSV 211 (426)
T ss_pred cCcEEEecccccccccCcccc---ccccc-Eechhhhc
Confidence 888888876532111 11112 22366 77777653
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=4.9e-06 Score=73.05 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=36.9
Q ss_pred EEEecCCCCCCCccc---cCCccCCcEEEEecCCCccccccccCC-CCCcEEEccCccccccchhhhcccccCeeecccc
Q 002780 528 VLDLEDAPVDYLPEG---VGNLFNLHYLSLRNTKVKIIPTSIGNL-LSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQY 603 (882)
Q Consensus 528 ~L~L~~~~i~~lp~~---i~~l~~Lr~L~L~~~~l~~lp~~i~~L-~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~ 603 (882)
.+||+.|.+..+++. +....+|...+|++|.++.+|+.+... +.+++|++++|.+..+|.++..++.||.|+++.|
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC
Confidence 344555544433322 233344444455555555555444332 2455555555555555555555555555555554
Q ss_pred cc
Q 002780 604 HY 605 (882)
Q Consensus 604 ~~ 605 (882)
.+
T Consensus 111 ~l 112 (177)
T KOG4579|consen 111 PL 112 (177)
T ss_pred cc
Confidence 43
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=6.3e-05 Score=80.73 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=42.8
Q ss_pred CccEEEeecc-CCCCCccccCCCCccEEEEeecCCCcccchhhcCCCccceeEeecccCCCeEEEccCCCcccceeEecc
Q 002780 702 YLQRLHLTGN-MKKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWE 780 (882)
Q Consensus 702 ~L~~L~l~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 780 (882)
+++.|++++| +..+|. -.++|+.|.+++|.-....+..+ .++|++|.+++|.....++ ++|+.|.+.+
T Consensus 53 ~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~~ 121 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIKG 121 (426)
T ss_pred CCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEEeCC
Confidence 7889999987 566762 23469999998875433333322 2588999998874333322 3466666654
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.54 E-value=3.9e-06 Score=92.81 Aligned_cols=109 Identities=21% Similarity=0.236 Sum_probs=76.4
Q ss_pred cccccCCceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCcccccc-ccCCCCCcEEEccCccccccchhhhccccc
Q 002780 517 NASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTS-IGNLLSLETLNMKNTLVRELPVEIRNLKKL 595 (882)
Q Consensus 517 ~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L 595 (882)
..++.-++.|+.|||++|++.+.- .+..|++|+.|||++|.+..+|.- ...+. |+.|.+++|.+.++. +|.+|++|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhh
Confidence 345566777888888888887665 677778888888888888877763 33343 888888888777776 78888888
Q ss_pred CeeecccccccCCCchhhhhhhccccCcccCCcccccccceec
Q 002780 596 RYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEA 638 (882)
Q Consensus 596 ~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~ 638 (882)
++|++++|-+... ..+. -++.|..|..|++.+|
T Consensus 257 ~~LDlsyNll~~h---------seL~-pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEH---------SELE-PLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hccchhHhhhhcc---------hhhh-HHHHHHHHHHHhhcCC
Confidence 8888888765521 1111 1455667777777766
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.32 E-value=3.7e-05 Score=67.70 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=63.8
Q ss_pred ccCCceeeEEEecCCCCCCCccccCC-ccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCee
Q 002780 520 IANFKLIKVLDLEDAPVDYLPEGVGN-LFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYL 598 (882)
Q Consensus 520 ~~~~~~Lr~L~L~~~~i~~lp~~i~~-l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 598 (882)
+..-..|...+|++|.+.++|+.|.. .+.+..|+|++|.|..+|..+..++.|+.|+++.|.+...|..|..|.+|-.|
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 34556677778888888877777644 34778888888888888888888888888888888777778777777777777
Q ss_pred eccccc
Q 002780 599 MVYQYH 604 (882)
Q Consensus 599 ~l~~~~ 604 (882)
+..+|.
T Consensus 129 ds~~na 134 (177)
T KOG4579|consen 129 DSPENA 134 (177)
T ss_pred cCCCCc
Confidence 776654
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.30 E-value=0.00028 Score=66.77 Aligned_cols=80 Identities=28% Similarity=0.384 Sum_probs=44.1
Q ss_pred eeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccC-CCCCcEEEccCccccccch--hhhcccccCeeeccc
Q 002780 526 IKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGN-LLSLETLNMKNTLVRELPV--EIRNLKKLRYLMVYQ 602 (882)
Q Consensus 526 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~-L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~ 602 (882)
.-.+||++|.+..++ .+..++.|.+|.|.+|+|+.+-..+.. +++|.+|.|.+|.+.++-. .+..+++|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 445666666655443 344556666666666666655444443 3456666666665554431 244556666666655
Q ss_pred cccc
Q 002780 603 YHYT 606 (882)
Q Consensus 603 ~~~~ 606 (882)
|..+
T Consensus 123 Npv~ 126 (233)
T KOG1644|consen 123 NPVE 126 (233)
T ss_pred Cchh
Confidence 5443
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.03 E-value=7.6e-05 Score=85.97 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=21.0
Q ss_pred CCCCcEEEEEecC-CCchhHHHHhccCCCCCEEEEeecCC
Q 002780 649 LRQLRMLSIRPQN-GNGKDLCALITNLENLETLTVEMTSK 687 (882)
Q Consensus 649 l~~L~~L~l~~~~-~~~~~l~~~l~~l~~L~~L~l~~~~~ 687 (882)
+++|+.|.+..+. .+...+......+++|++|++++|..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4555555544332 34445555555566666666665543
No 64
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.86 E-value=0.0033 Score=63.23 Aligned_cols=78 Identities=24% Similarity=0.338 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh-hhcccccCCchhHHHHHHHHHHHHhhhhhHH
Q 002780 4 AAVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADAR-AAVEELEGGGEESVRTWVKQLRDEAYRIEDV 82 (882)
Q Consensus 4 ~~v~~~~~kl~~~l~~e~~~~~~v~~~~~~L~~~L~~i~a~l~~ae~~-~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD~ 82 (882)
|.|.+++.+|-.+.......+.-++.+++-++.+++++|.||+...+. ...- .....++.++...||++|++
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh-------~~~ed~a~~ii~kAyevEYV 368 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKH-------DTNEDCATQIIRKAYEVEYV 368 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhh-------hhhhhHHHHHHHHHhheeee
Confidence 568888999999888888888999999999999999999999987443 3333 44899999999999999999
Q ss_pred HHHHHH
Q 002780 83 IDEYTL 88 (882)
Q Consensus 83 lD~~~~ 88 (882)
+|.+..
T Consensus 369 VDaCi~ 374 (402)
T PF12061_consen 369 VDACIS 374 (402)
T ss_pred eehhhc
Confidence 999853
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.59 E-value=0.003 Score=60.00 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=45.7
Q ss_pred ccEEEEeecCCCcccchhhcCCCccceeEeecccCCCeEEEccCCCcccceeEecccCCceeeE--EcCCCccCccEEEe
Q 002780 725 LIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVI--IEKGAMPDIRELWI 802 (882)
Q Consensus 725 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~l 802 (882)
...++|++|.+.. .+.|..++.|..|.+.+|.+...-+.....+|+|+.|.+.+|+. ..+. ..+..||.|+.|.+
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccceeee
Confidence 3444444444321 22334444555555554444433333333345555555555432 1111 12345566666666
Q ss_pred ecCCCcCcc---cccccccccCcEEEEecC
Q 002780 803 GPCPLLMEI---PIGIEHLKNLKLLVFAGM 829 (882)
Q Consensus 803 ~~c~~l~~l---p~~l~~l~~L~~L~l~~~ 829 (882)
-+|+....- --.+..+++|+.|++.+-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 665532210 113445666666666553
No 66
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.53 E-value=0.43 Score=53.20 Aligned_cols=225 Identities=16% Similarity=0.118 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHhC--CceEEEEEecCCChh------hHHHhHHhcCCCCCCcE--EEEecCchHHHhhhc----cCCCc
Q 002780 205 EEMELITALRDHLK--DKSYMVVFDDVWKID------FWGDVEHALLDNKKCSR--IIVTTRHMNVAKYCK----SSSSV 270 (882)
Q Consensus 205 ~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~l~~~~~gs~--IivTTR~~~v~~~~~----~~~~~ 270 (882)
+..++...+.+.+. ++..+||||+++... .+..+....... ++++ ||.++....+..... .....
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~ 199 (394)
T PRK00411 121 SFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLTFLYILDPRVKSVFRP 199 (394)
T ss_pred CHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcchhhhcCHHHHhcCCc
Confidence 34566677777775 456899999998642 233333332222 3444 566666544333211 11111
Q ss_pred ceeecCCCChHHHHHHHHHHHcCCCCC-CCCChhHHHHHHHHHHHhCCChhHHHHHHHHh--c---CCC-CChHHHHHHH
Q 002780 271 HVHELETLPPNEARKLFCRKVLGPSSG-GCCPSELKELSQDILAKCGGLPLAIVAVGGLL--S---SKN-RVVSEWKKLF 343 (882)
Q Consensus 271 ~~~~l~~L~~~~~~~Lf~~~af~~~~~-~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L--~---~~~-~~~~~w~~~l 343 (882)
..+.+++++.++..+++..++-..-.+ ...+..++.+++......|..+.|+.++-... + ++. -+.+....+.
T Consensus 200 ~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~ 279 (394)
T PRK00411 200 EEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAY 279 (394)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 467899999999999999876322111 12233344455545444677888888775432 1 111 1345555555
Q ss_pred HHhccccCCCCChhhHHHHHHhccCCCCcchhHHHhhcccc-CC-CceechHHHHHH--HHHc--CccccCCCCCHHHHH
Q 002780 344 DRLGSILGSDPHLKDCNRVLSEGYYALPHHLKSCLLSFGLF-QE-SCKVNCARLIRL--WIAE--GFVQYSKRPTSEQVA 417 (882)
Q Consensus 344 ~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~f-p~-~~~i~~~~li~~--W~a~--g~i~~~~~~~~e~~~ 417 (882)
+... .....-.+..||.+.|..+.-++-. .. ...+...++... .+++ |.- + .+ ....
T Consensus 280 ~~~~------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~-~---~~-~~~~ 342 (394)
T PRK00411 280 EKSE------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE-P---RT-HTRF 342 (394)
T ss_pred HHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC-c---Cc-HHHH
Confidence 4431 1223445788998877766555422 21 133555555432 2222 221 1 11 2335
Q ss_pred HHHHHHHHhCCccccccc--CCCCcEeEeecc
Q 002780 418 EEYLNELIDRSLVQVSKR--DISGRARICQVH 447 (882)
Q Consensus 418 ~~~~~~L~~~sll~~~~~--~~~g~~~~~~mh 447 (882)
..|++.|...+++..... +..|+.+.++.+
T Consensus 343 ~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 343 YEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred HHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 669999999999987543 334666666544
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.36 E-value=0.0018 Score=64.07 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=79.0
Q ss_pred ccCCceeeEEEecCCCCC----CC-------ccccCCccCCcEEEEecCCCc-cccc----cccCCCCCcEEEccCcccc
Q 002780 520 IANFKLIKVLDLEDAPVD----YL-------PEGVGNLFNLHYLSLRNTKVK-IIPT----SIGNLLSLETLNMKNTLVR 583 (882)
Q Consensus 520 ~~~~~~Lr~L~L~~~~i~----~l-------p~~i~~l~~Lr~L~L~~~~l~-~lp~----~i~~L~~L~~L~L~~~~l~ 583 (882)
+.+-++|++.+++..... .+ .+.+-+|++|+..+||.|.+. ..|+ .|++-++|.+|.+++|.++
T Consensus 54 ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 54 IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 444555666666543221 22 233456677777777777655 3333 3666778888888888766
Q ss_pred ccch--------------hhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecCH-------Hh
Q 002780 584 ELPV--------------EIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADS-------QV 642 (882)
Q Consensus 584 ~lp~--------------~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~-------~~ 642 (882)
.+.- .+..-|.|+......|.+..+ +.......+..-.+|+++.+..++. -.
T Consensus 134 p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng-------s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~ 206 (388)
T COG5238 134 PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG-------SKELSAALLESHENLKEVKIQQNGIRPEGVTMLA 206 (388)
T ss_pred ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC-------cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHH
Confidence 4431 122345666666666665532 1111111222334455555444421 11
Q ss_pred HHHhcCCCCCcEEEEEecCCCc---hhHHHHhccCCCCCEEEEeec
Q 002780 643 LKELMKLRQLRMLSIRPQNGNG---KDLCALITNLENLETLTVEMT 685 (882)
Q Consensus 643 ~~~l~~l~~L~~L~l~~~~~~~---~~l~~~l~~l~~L~~L~l~~~ 685 (882)
...+..+.+|+.|++..|.++. ..+...+..++.|+.|.+..|
T Consensus 207 ~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 207 FLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 2234445555555555543321 223334444455555555544
No 68
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.33 E-value=0.11 Score=54.50 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=69.3
Q ss_pred CCceEEEEEecCCChh--hHHHhHHhcC---CCCCCcEEEEecCchHHHhhhccC-------CCcceeecCCCChHHHHH
Q 002780 218 KDKSYMVVFDDVWKID--FWGDVEHALL---DNKKCSRIIVTTRHMNVAKYCKSS-------SSVHVHELETLPPNEARK 285 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~~--~~~~l~~~l~---~~~~gs~IivTTR~~~v~~~~~~~-------~~~~~~~l~~L~~~~~~~ 285 (882)
.+++++||+||+|... .++.+..... +......|++|... ......... .....+++++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 6788999999999753 5665543222 11222344555543 222221110 012467899999999999
Q ss_pred HHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHh
Q 002780 286 LFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLL 329 (882)
Q Consensus 286 Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L 329 (882)
++...+...... ....--.+..+.|++.|+|.|..|..++..+
T Consensus 200 ~l~~~l~~~g~~-~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNR-DAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCC-CCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 998776543210 0111224788999999999999999998876
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.07 E-value=0.0012 Score=76.02 Aligned_cols=111 Identities=24% Similarity=0.278 Sum_probs=58.8
Q ss_pred CcccccccceecC---HH-hHHHhcCCCCCcEEEEEec-CCCchhHHHHhccCCCCCEEEEeecCCccccccCCCCCCCC
Q 002780 627 LTNLQKLSIIEAD---SQ-VLKELMKLRQLRMLSIRPQ-NGNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQ 701 (882)
Q Consensus 627 l~~L~~L~l~~~~---~~-~~~~l~~l~~L~~L~l~~~-~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~ 701 (882)
+++|++|.+..|. .. ...-...+++|+.|+++.+ ..+...+.....++++|+.|.+..... .+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-----------c~- 335 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-----------CP- 335 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-----------Cc-
Confidence 4556666544442 12 2233446778888888874 333444555566677777765543321 11
Q ss_pred CccEEEeeccCC----C-CCccccCCCCccEEEEeecCCCccc-chhhcCCCcc
Q 002780 702 YLQRLHLTGNMK----K-LPDWIFKLKNLIRLGLDLSGLTEEP-IRVLQTLPNL 749 (882)
Q Consensus 702 ~L~~L~l~~~~~----~-lp~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L 749 (882)
.++.+.+.+... . ....+..+++|+.+.|..+...... ...+.++|+|
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 455555544321 1 1123455677777777777643333 2344555555
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.06 E-value=0.0033 Score=62.35 Aligned_cols=81 Identities=27% Similarity=0.290 Sum_probs=43.9
Q ss_pred ccCCceeeEEEecCC--CCC-CCccccCCccCCcEEEEecCCCcc---ccccccCCCCCcEEEccCccccccc----hhh
Q 002780 520 IANFKLIKVLDLEDA--PVD-YLPEGVGNLFNLHYLSLRNTKVKI---IPTSIGNLLSLETLNMKNTLVRELP----VEI 589 (882)
Q Consensus 520 ~~~~~~Lr~L~L~~~--~i~-~lp~~i~~l~~Lr~L~L~~~~l~~---lp~~i~~L~~L~~L~L~~~~l~~lp----~~i 589 (882)
|..+++|+.|+++.| ++. .++-...++++|++|++++|+|.. ++. +..+.||.+||+.+|....+- ..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCccccccHHHHHH
Confidence 345566677777766 332 444444455677777777766552 221 445566666666666444332 123
Q ss_pred hcccccCeeecc
Q 002780 590 RNLKKLRYLMVY 601 (882)
Q Consensus 590 ~~L~~L~~L~l~ 601 (882)
..+++|++|+-.
T Consensus 140 ~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 140 LLLPSLKYLDGC 151 (260)
T ss_pred HHhhhhcccccc
Confidence 445566655543
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.03 E-value=0.0036 Score=62.15 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=17.3
Q ss_pred CccCCcEEEEecC--CCc-cccccccCCCCCcEEEccCccc
Q 002780 545 NLFNLHYLSLRNT--KVK-IIPTSIGNLLSLETLNMKNTLV 582 (882)
Q Consensus 545 ~l~~Lr~L~L~~~--~l~-~lp~~i~~L~~L~~L~L~~~~l 582 (882)
.|++|++|.++.| ++. .++....++++|++|++++|++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 3445555555555 222 3333333445555555555533
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.00061 Score=67.46 Aligned_cols=82 Identities=20% Similarity=0.232 Sum_probs=57.4
Q ss_pred CceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccc--hhhhcccccCeeec
Q 002780 523 FKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELP--VEIRNLKKLRYLMV 600 (882)
Q Consensus 523 ~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l 600 (882)
+.+.+.|++.||.+..+. .+.+++.|++|.|+-|+|+.|- .+..|++|+.|.|+.|.+..+- ..+.++++||.|-|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 445666777777766442 3456777888888888887773 3777888888888877666554 24667888888888
Q ss_pred cccccc
Q 002780 601 YQYHYT 606 (882)
Q Consensus 601 ~~~~~~ 606 (882)
..|..+
T Consensus 96 ~ENPCc 101 (388)
T KOG2123|consen 96 DENPCC 101 (388)
T ss_pred ccCCcc
Confidence 877655
No 73
>PRK06893 DNA replication initiation factor; Validated
Probab=95.91 E-value=0.019 Score=58.38 Aligned_cols=93 Identities=11% Similarity=0.143 Sum_probs=60.9
Q ss_pred EEEEEecCCCh---hhHHH-hHHhcCCC-CCCcEEEEecCc----------hHHHhhhccCCCcceeecCCCChHHHHHH
Q 002780 222 YMVVFDDVWKI---DFWGD-VEHALLDN-KKCSRIIVTTRH----------MNVAKYCKSSSSVHVHELETLPPNEARKL 286 (882)
Q Consensus 222 ~LlVLDdv~~~---~~~~~-l~~~l~~~-~~gs~IivTTR~----------~~v~~~~~~~~~~~~~~l~~L~~~~~~~L 286 (882)
-+|||||+|.. .+|+. +...+... ..|+.|||||.+ +.+.+.+... .+++++++++++.+++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g---~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG---EIYQLNDLTDEQKIIV 169 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC---CeeeCCCCCHHHHHHH
Confidence 48999999974 45653 32323321 235666555443 4677776554 7899999999999999
Q ss_pred HHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHH
Q 002780 287 FCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAI 322 (882)
Q Consensus 287 f~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal 322 (882)
+.++++...- ..+ +++..-|++++.|-.-++
T Consensus 170 L~~~a~~~~l--~l~---~~v~~~L~~~~~~d~r~l 200 (229)
T PRK06893 170 LQRNAYQRGI--ELS---DEVANFLLKRLDRDMHTL 200 (229)
T ss_pred HHHHHHHcCC--CCC---HHHHHHHHHhccCCHHHH
Confidence 9999986531 112 456677777777654433
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.0011 Score=65.82 Aligned_cols=100 Identities=20% Similarity=0.215 Sum_probs=73.5
Q ss_pred CccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCeeecccccccCCCchhhhhhhccccCcc
Q 002780 545 NLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGF 624 (882)
Q Consensus 545 ~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i 624 (882)
.+.+.+.|+..||.+..+. -+.+++.|+.|.|+-|.+..|. .+..+++|+.|+|..|.+.+ ..++. -+
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~s---------ldEL~-YL 84 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIES---------LDELE-YL 84 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhccccc---------HHHHH-HH
Confidence 3567788999999988763 3667899999999999998886 67889999999999987663 22221 25
Q ss_pred cCCcccccccceecC-------HHhHHHhcCCCCCcEEE
Q 002780 625 GSLTNLQKLSIIEAD-------SQVLKELMKLRQLRMLS 656 (882)
Q Consensus 625 ~~l~~L~~L~l~~~~-------~~~~~~l~~l~~L~~L~ 656 (882)
.++++|++|.+..+. .....-+.-|++|++|+
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 678888888887762 12233466777777776
No 75
>PF05729 NACHT: NACHT domain
Probab=95.72 E-value=0.024 Score=54.26 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=49.8
Q ss_pred CCceEEEEEecCCChhh---------HHHhH-HhcCC-CCCCcEEEEecCchHHHhhhccCCCcceeecCCCChHHHHHH
Q 002780 218 KDKSYMVVFDDVWKIDF---------WGDVE-HALLD-NKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKL 286 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~~~---------~~~l~-~~l~~-~~~gs~IivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~L 286 (882)
..++++||+|++++... +..+. ..+.. ..++.+||||||................+++++|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 56899999999986532 22222 23332 356899999999977733222111226899999999999998
Q ss_pred HHHH
Q 002780 287 FCRK 290 (882)
Q Consensus 287 f~~~ 290 (882)
+.++
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8664
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.69 E-value=0.0044 Score=36.58 Aligned_cols=18 Identities=39% Similarity=0.715 Sum_probs=8.4
Q ss_pred CcEEEEecCCCccccccc
Q 002780 549 LHYLSLRNTKVKIIPTSI 566 (882)
Q Consensus 549 Lr~L~L~~~~l~~lp~~i 566 (882)
|++|+|++|.++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 77
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.66 E-value=0.19 Score=46.55 Aligned_cols=80 Identities=11% Similarity=0.189 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCchhHHHHHHHHHHHHhhhhhH
Q 002780 2 AEAAVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADARAAVEELEGGGEESVRTWVKQLRDEAYRIED 81 (882)
Q Consensus 2 A~~~v~~~~~kl~~~l~~e~~~~~~v~~~~~~L~~~L~~i~a~l~~ae~~~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD 81 (882)
+.||++.+++.+...+.+..+....++.-+++|..+++.|..++.+.+.....-+ ..-+.-++++.+...++++
T Consensus 7 ~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld------~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 7 GGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELD------RPRQEEIERLKELLEKGKE 80 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcC------CchhHHHHHHHHHHHHHHH
Confidence 3567788888888888889999999999999999999999999999988643321 3337778999999999999
Q ss_pred HHHHHH
Q 002780 82 VIDEYT 87 (882)
Q Consensus 82 ~lD~~~ 87 (882)
++..|.
T Consensus 81 LV~k~s 86 (147)
T PF05659_consen 81 LVEKCS 86 (147)
T ss_pred HHHHhc
Confidence 999883
No 78
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.50 E-value=0.27 Score=53.19 Aligned_cols=190 Identities=15% Similarity=0.074 Sum_probs=105.2
Q ss_pred HHHHHHhCCceEEEEEecCCChhhHHHhHHhcCCCCCCcEEEEecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHH
Q 002780 211 TALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRK 290 (882)
Q Consensus 211 ~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 290 (882)
+.+...+.+.+..+|+|+..+...+. ..+ .+.+-|..|||...+......-. ...+++++++.++..+++.+.
T Consensus 120 e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l---~~~~li~at~~~~~l~~~L~sRf-~~~~~l~~~~~~e~~~il~~~ 192 (328)
T PRK00080 120 EILYPAMEDFRLDIMIGKGPAARSIR---LDL---PPFTLIGATTRAGLLTSPLRDRF-GIVQRLEFYTVEELEKIVKRS 192 (328)
T ss_pred HHHHHHHHhcceeeeeccCcccccee---ecC---CCceEEeecCCcccCCHHHHHhc-CeeeecCCCCHHHHHHHHHHH
Confidence 34455555666666666654433221 011 22456777888554433221110 157899999999999999988
Q ss_pred HcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCCChHHHHHHHHHhccccCCCCChhhHHHHHHhccCCC
Q 002780 291 VLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYYAL 370 (882)
Q Consensus 291 af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L 370 (882)
+...+. .. -.+....|++.|+|.|-.+..+...+ ..|..... ..... ..........+...|..|
T Consensus 193 ~~~~~~--~~---~~~~~~~ia~~~~G~pR~a~~~l~~~-------~~~a~~~~--~~~I~-~~~v~~~l~~~~~~~~~l 257 (328)
T PRK00080 193 ARILGV--EI---DEEGALEIARRSRGTPRIANRLLRRV-------RDFAQVKG--DGVIT-KEIADKALDMLGVDELGL 257 (328)
T ss_pred HHHcCC--Cc---CHHHHHHHHHHcCCCchHHHHHHHHH-------HHHHHHcC--CCCCC-HHHHHHHHHHhCCCcCCC
Confidence 765432 11 23568899999999995444333322 22222110 00000 111123344556778888
Q ss_pred CcchhHHHh-hccccCCCceechHHHHHHHHHcCccccCCCCCHHHHHHHHHH-HHHhCCcccccc
Q 002780 371 PHHLKSCLL-SFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLN-ELIDRSLVQVSK 434 (882)
Q Consensus 371 ~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~~~-~L~~~sll~~~~ 434 (882)
++..+.-+. ....|+.+ .+..+.+.... | . ..+.+++.++ .|++.+|++...
T Consensus 258 ~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g----~----~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 258 DEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G----E----ERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred CHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C----C----CcchHHHHhhHHHHHcCCcccCC
Confidence 888777775 56667655 46655554332 1 1 1223444455 799999997433
No 79
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.37 E-value=0.24 Score=52.94 Aligned_cols=190 Identities=15% Similarity=0.016 Sum_probs=109.0
Q ss_pred HHHHHHHhCCceEEEEEecCCChhhHHHhHHhcCCCCCCcEEEEecCchHHHhhhccCCCcceeecCCCChHHHHHHHHH
Q 002780 210 ITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCR 289 (882)
Q Consensus 210 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 289 (882)
.+.+...+.+.+..+|+|+.....+|.. .+ .+.+-|.+|||...+......-. ...+++++++.++..+++.+
T Consensus 98 ~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR~-~~~~~l~~l~~~e~~~il~~ 170 (305)
T TIGR00635 98 EELLYPAMEDFRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRDRF-GIILRLEFYTVEELAEIVSR 170 (305)
T ss_pred HHHhhHHHhhhheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHhhc-ceEEEeCCCCHHHHHHHHHH
Confidence 4556777777888888888766655421 11 23566777888754443221110 15789999999999999998
Q ss_pred HHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCCChHHHHHHHHHhccccCCCCChhhHHHHHHhccCC
Q 002780 290 KVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYYA 369 (882)
Q Consensus 290 ~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~ 369 (882)
.+..... ..+ .+....|++.|+|.|-.+..++..+ |......-..... ..........+..+|..
T Consensus 171 ~~~~~~~--~~~---~~al~~ia~~~~G~pR~~~~ll~~~---------~~~a~~~~~~~it-~~~v~~~l~~l~~~~~~ 235 (305)
T TIGR00635 171 SAGLLNV--EIE---PEAALEIARRSRGTPRIANRLLRRV---------RDFAQVRGQKIIN-RDIALKALEMLMIDELG 235 (305)
T ss_pred HHHHhCC--CcC---HHHHHHHHHHhCCCcchHHHHHHHH---------HHHHHHcCCCCcC-HHHHHHHHHHhCCCCCC
Confidence 8864321 111 3566889999999996654444332 2111000000000 00112233335667888
Q ss_pred CCcchhHHHh-hccccCCCceechHHHHHHHHHcCccccCCCCCHHHHHHHHHH-HHHhCCccccc
Q 002780 370 LPHHLKSCLL-SFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLN-ELIDRSLVQVS 433 (882)
Q Consensus 370 L~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~~~-~L~~~sll~~~ 433 (882)
++++.+..+. .++.+..+ .+..+.+.... |. ....++..++ .|++++|+...
T Consensus 236 l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 236 LDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred CCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHcCCcccC
Confidence 8888776555 44666533 45544443322 11 1234666677 69999999643
No 80
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.37 E-value=2.8 Score=46.06 Aligned_cols=214 Identities=16% Similarity=0.132 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhC--CceEEEEEecCCChh-h----HHHhHHhc-CCCCC--CcEEEEecCchHHHhhh----ccCCCcce
Q 002780 207 MELITALRDHLK--DKSYMVVFDDVWKID-F----WGDVEHAL-LDNKK--CSRIIVTTRHMNVAKYC----KSSSSVHV 272 (882)
Q Consensus 207 ~~~~~~l~~~L~--~kr~LlVLDdv~~~~-~----~~~l~~~l-~~~~~--gs~IivTTR~~~v~~~~----~~~~~~~~ 272 (882)
.++...+.+.+. +++++||||+++... . ...+.... ....+ .-.+|.+|........+ ........
T Consensus 114 ~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~ 193 (365)
T TIGR02928 114 SEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEE 193 (365)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcce
Confidence 444455555553 568899999998651 1 22222221 11112 22345555444322111 11111146
Q ss_pred eecCCCChHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChh-HHHHHHHHh--c---CCC-CChHHHHHHHHH
Q 002780 273 HELETLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPL-AIVAVGGLL--S---SKN-RVVSEWKKLFDR 345 (882)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g~~L--~---~~~-~~~~~w~~~l~~ 345 (882)
+.+++.+.++-.+++..++-....+....++..+...+++....|-|- |+.++-... + ++. -+.+..+.+.+.
T Consensus 194 i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 194 IIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEK 273 (365)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 889999999999999988642111112344555566667777788874 433332211 1 111 133444444433
Q ss_pred hccccCCCCChhhHHHHHHhccCCCCcchhHHHhhccccC--CCceechHHHHHHHH-HcCccccCCCCCHHHHHHHHHH
Q 002780 346 LGSILGSDPHLKDCNRVLSEGYYALPHHLKSCLLSFGLFQ--ESCKVNCARLIRLWI-AEGFVQYSKRPTSEQVAEEYLN 422 (882)
Q Consensus 346 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp--~~~~i~~~~li~~W~-a~g~i~~~~~~~~e~~~~~~~~ 422 (882)
.. .....-+...||.+.|..+..++..- ++..+...++...+- ....+.. .........+++.
T Consensus 274 ~~------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~l~ 339 (365)
T TIGR02928 274 IE------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGV--DPLTQRRISDLLN 339 (365)
T ss_pred HH------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCC--CCCcHHHHHHHHH
Confidence 21 12233456788888776665554221 334456666555321 1111110 1122456788899
Q ss_pred HHHhCCcccccc
Q 002780 423 ELIDRSLVQVSK 434 (882)
Q Consensus 423 ~L~~~sll~~~~ 434 (882)
.|...+++....
T Consensus 340 ~l~~~gli~~~~ 351 (365)
T TIGR02928 340 ELDMLGLVEAEE 351 (365)
T ss_pred HHHhcCCeEEEE
Confidence 999999998754
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.25 E-value=0.0006 Score=65.72 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=79.1
Q ss_pred cccCCceeeEEEecCCCCCCCccccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCee
Q 002780 519 SIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYL 598 (882)
Q Consensus 519 ~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 598 (882)
.+..++..++||++.|.+..+-..|..+..|..|+++.+.+..+|+.++.+..+..+++.+|+...+|.+.++++.++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 35667889999999999888888888999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccc
Q 002780 599 MVYQYHYT 606 (882)
Q Consensus 599 ~l~~~~~~ 606 (882)
++-++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99887654
No 82
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.73 E-value=0.015 Score=34.29 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=16.1
Q ss_pred CCcEEEccCccccccchhhhc
Q 002780 571 SLETLNMKNTLVRELPVEIRN 591 (882)
Q Consensus 571 ~L~~L~L~~~~l~~lp~~i~~ 591 (882)
+|++|||++|.+..+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 578888888888888876654
No 83
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.08 E-value=1 Score=52.73 Aligned_cols=218 Identities=16% Similarity=0.177 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHhCC--ceEEEEEecCCCh---hhHHHhHHhcCCCCCCcEEEEecCchHHHhhhccCCCcceeecC---
Q 002780 205 EEMELITALRDHLKD--KSYMVVFDDVWKI---DFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELE--- 276 (882)
Q Consensus 205 ~~~~~~~~l~~~L~~--kr~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~l~--- 276 (882)
+...+.+.+...+.. +...+||||---. .--..+...+....++-..|||||+.--.......-.....++.
T Consensus 112 ~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~ 191 (894)
T COG2909 112 SLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEE 191 (894)
T ss_pred cHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHh
Confidence 344556666665544 6889999997543 22334444455566778899999985322111100001223332
Q ss_pred -CCChHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCCChHHHHHHHHHhccccCCCCC
Q 002780 277 -TLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPH 355 (882)
Q Consensus 277 -~L~~~~~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~~w~~~l~~~~~~~~~~~~ 355 (882)
.++.+|+-++|...-...- -..-.+.+.+.-.|.+-|+..++=.++.... .+.-...+....
T Consensus 192 Lrf~~eE~~~fl~~~~~l~L--------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~-~~q~~~~LsG~~-------- 254 (894)
T COG2909 192 LRFDTEEAAAFLNDRGSLPL--------DAADLKALYDRTEGWAAALQLIALALRNNTS-AEQSLRGLSGAA-------- 254 (894)
T ss_pred hcCChHHHHHHHHHcCCCCC--------ChHHHHHHHhhcccHHHHHHHHHHHccCCCc-HHHHhhhccchH--------
Confidence 4788999999987642221 1345677888889999999888877773222 222222111110
Q ss_pred hhhHHHH-HHhccCCCCcchhHHHhhccccCCCceechHHHHHHHHHcCccccCCCCCHHHHHHHHHHHHHhCCcccccc
Q 002780 356 LKDCNRV-LSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSK 434 (882)
Q Consensus 356 ~~~i~~~-l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~~~~L~~~sll~~~~ 434 (882)
.-+..- ..--++.||+++|..++-||+++.- -+.|+..- +-++.+...+++|.+++++-..-
T Consensus 255 -~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L------------tg~~ng~amLe~L~~~gLFl~~L 317 (894)
T COG2909 255 -SHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL------------TGEENGQAMLEELERRGLFLQRL 317 (894)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH------------hcCCcHHHHHHHHHhCCCceeee
Confidence 112222 2234688999999999999998752 12333321 12344788899999999986443
Q ss_pred cCCCCcEeEeeccHHHHHHHHHHhh
Q 002780 435 RDISGRARICQVHDLMHQIIIRKTE 459 (882)
Q Consensus 435 ~~~~g~~~~~~mhdlv~dla~~~~~ 459 (882)
++. ...|+.|.+..|+-.....
T Consensus 318 dd~---~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 318 DDE---GQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred cCC---CceeehhHHHHHHHHhhhc
Confidence 332 2579999999999765543
No 84
>COG3903 Predicted ATPase [General function prediction only]
Probab=94.05 E-value=0.041 Score=58.60 Aligned_cols=231 Identities=17% Similarity=0.117 Sum_probs=144.1
Q ss_pred HHHHHHHHHHhCCceEEEEEecCCCh-hhHHHhHHhcCCCCCCcEEEEecCchHHHhhhccCCCcceeecCCCChH-HHH
Q 002780 207 MELITALRDHLKDKSYMVVFDDVWKI-DFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPN-EAR 284 (882)
Q Consensus 207 ~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~l~~L~~~-~~~ 284 (882)
+.-...+..+..++|.++|+||.-+. ++-..+.-.+..+.+.-.|+.|+|....... ...+.+++|+.. ++.
T Consensus 75 ~~~~~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~g------e~~~~~~~L~~~d~a~ 148 (414)
T COG3903 75 DSAVDTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAG------EVHRRVPSLSLFDEAI 148 (414)
T ss_pred hHHHHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccc------cccccCCccccCCchh
Confidence 33455677888899999999998554 2333344455555556678889987554432 267888888876 799
Q ss_pred HHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCCChHHHHHHHH-Hhcc--ccCC--CCChhhH
Q 002780 285 KLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFD-RLGS--ILGS--DPHLKDC 359 (882)
Q Consensus 285 ~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~~w~~~l~-~~~~--~~~~--~~~~~~i 359 (882)
++|...|-....+......-...+..|.++..|.||||...++..++-.. .+--..+. .+.. .-.. .......
T Consensus 149 ~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~--~~i~~~L~drf~ll~~~~r~a~~~~qtl 226 (414)
T COG3903 149 ELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSP--DEIAAGLRDRFRLLTGGARLAVLRQQTL 226 (414)
T ss_pred HHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCH--HHHHHHHhhHHHHHhcccccchhHHHhc
Confidence 99998886554333333444678899999999999999999999876543 22221111 1110 0010 1122456
Q ss_pred HHHHHhccCCCCcchhHHHhhccccCCCceechHHHHHHHHHcCccccCCCCCHHHHHHHHHHHHHhCCcccccccCCCC
Q 002780 360 NRVLSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSKRDISG 439 (882)
Q Consensus 360 ~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~~~~L~~~sll~~~~~~~~g 439 (882)
.+.+.+||.-|..-.+.-|--++.|...+... ...|.+-|-... .+......-+..+++++++.......
T Consensus 227 ~asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~-- 296 (414)
T COG3903 227 RASLDWSYALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLG-- 296 (414)
T ss_pred cchhhhhhHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhh--
Confidence 78899999999999999999999998876554 334555443210 01222344466778888876544221
Q ss_pred cEeEeeccHHHHHHHHH
Q 002780 440 RARICQVHDLMHQIIIR 456 (882)
Q Consensus 440 ~~~~~~mhdlv~dla~~ 456 (882)
+ ..++.-+-++.++..
T Consensus 297 ~-a~~Rl~eT~r~Yala 312 (414)
T COG3903 297 R-ARYRLLETGRRYALA 312 (414)
T ss_pred H-HHHHHHHHHHHHHHH
Confidence 1 224444444444443
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.10 E-value=0.059 Score=29.45 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=4.0
Q ss_pred CcEEEEecCCCcc
Q 002780 549 LHYLSLRNTKVKI 561 (882)
Q Consensus 549 Lr~L~L~~~~l~~ 561 (882)
|+.|+|++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3344444443333
No 86
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.58 E-value=1.2 Score=45.24 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=51.8
Q ss_pred ceEEEEEecCCChh-h-------HHHhHHhcC---CCCCCcEEEEecCchHHHhh-hcc----CCCcceeecCCCChHHH
Q 002780 220 KSYMVVFDDVWKID-F-------WGDVEHALL---DNKKCSRIIVTTRHMNVAKY-CKS----SSSVHVHELETLPPNEA 283 (882)
Q Consensus 220 kr~LlVLDdv~~~~-~-------~~~l~~~l~---~~~~gs~IivTTR~~~v~~~-~~~----~~~~~~~~l~~L~~~~~ 283 (882)
++++||+||+.... . ...+...+. ...+.+ +|+++....+... ... ......+.+++|+.+++
T Consensus 118 ~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 196 (234)
T PF01637_consen 118 KKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEA 196 (234)
T ss_dssp CCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHH
T ss_pred CcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHH
Confidence 45999999997654 1 122222222 233344 4445444444433 110 01124599999999999
Q ss_pred HHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 002780 284 RKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVA 324 (882)
Q Consensus 284 ~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 324 (882)
++++...+-.. . .. +.-.+..++|...+||.|..|.-
T Consensus 197 ~~~~~~~~~~~-~--~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 197 REFLKELFKEL-I--KL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHCC----------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHh-h--cc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 99999865332 1 11 11245569999999999987753
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.50 E-value=0.085 Score=28.82 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=10.0
Q ss_pred CCCcEEEccCccccccc
Q 002780 570 LSLETLNMKNTLVRELP 586 (882)
Q Consensus 570 ~~L~~L~L~~~~l~~lp 586 (882)
++|++|++++|.+.++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46788888888877776
No 88
>PF13173 AAA_14: AAA domain
Probab=91.61 E-value=0.44 Score=43.34 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=53.0
Q ss_pred HHHHHHHhCCceEEEEEecCCChhhHHHhHHhcCCCCCCcEEEEecCchHHHhhhc-c--CCCcceeecCCCChHHH
Q 002780 210 ITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCK-S--SSSVHVHELETLPPNEA 283 (882)
Q Consensus 210 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~-~--~~~~~~~~l~~L~~~~~ 283 (882)
.+.+.+....++.+|+||+|.....|......+.+..+..+||+|+.+......-. . .+-...++|.||+..|.
T Consensus 51 ~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 51 LEYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 34444444457889999999998889888877777667789999999877764311 1 11235688999987764
No 89
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.90 E-value=3 Score=44.64 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=65.7
Q ss_pred CCceEEEEEe-cCCChhhHHHhHHhcCCCCCCcEEEEecCchHHH-hhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 218 KDKSYMVVFD-DVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVA-KYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 218 ~~kr~LlVLD-dv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
.++|++||=| |..+...|+.+...+..-.+++.+|++|.+.+.. ......+ ..+.+.++++++......+.. ...
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc--~~~~~~~~~~~~~~~~l~~~~-~~~ 168 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC--QIYKLNRLSKEEIEKFISYKY-NDI 168 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc--eeeeCCCcCHHHHHHHHHHHh-cCC
Confidence 3566666555 5566678999999999888899999888765422 2222222 789999999999877775543 211
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVA 324 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 324 (882)
+ .+.+..++..++|.|.-+..
T Consensus 169 -----~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 169 -----K---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred -----C---HHHHHHHHHHcCCCHHHHHH
Confidence 1 23367889999999875543
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.71 E-value=0.52 Score=42.74 Aligned_cols=80 Identities=16% Similarity=0.269 Sum_probs=27.4
Q ss_pred cccCCceeeEEEecCCCCCCCcc-ccCCccCCcEEEEecCCCcccccc-ccCCCCCcEEEccCccccccchh-hhccccc
Q 002780 519 SIANFKLIKVLDLEDAPVDYLPE-GVGNLFNLHYLSLRNTKVKIIPTS-IGNLLSLETLNMKNTLVRELPVE-IRNLKKL 595 (882)
Q Consensus 519 ~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L 595 (882)
.|.+++.|+.+.+.. .+..++. .|..+.+|+.+.+.++ +..++.. +.++.+|+.+.+.+ .+..++.. +..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444455555443 2333322 2444445555555442 4433322 33444455555533 23233322 2334455
Q ss_pred Ceeecc
Q 002780 596 RYLMVY 601 (882)
Q Consensus 596 ~~L~l~ 601 (882)
+.+.+.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 544443
No 91
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.65 E-value=0.011 Score=57.24 Aligned_cols=85 Identities=9% Similarity=0.109 Sum_probs=74.4
Q ss_pred ccCCccCCcEEEEecCCCccccccccCCCCCcEEEccCccccccchhhhcccccCeeecccccccCCCchhhhhhhcccc
Q 002780 542 GVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVR 621 (882)
Q Consensus 542 ~i~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p 621 (882)
.|........|+++.+.+..+-..++.++.|..||++.+.+..+|.+++.+..++++++..|+. ...|
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~------------~~~p 104 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNH------------SQQP 104 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccch------------hhCC
Confidence 4677788999999999999898889999999999999999999999999999999999998754 3678
Q ss_pred CcccCCcccccccceec
Q 002780 622 GGFGSLTNLQKLSIIEA 638 (882)
Q Consensus 622 ~~i~~l~~L~~L~l~~~ 638 (882)
.++++++.++.++.-.+
T Consensus 105 ~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKT 121 (326)
T ss_pred ccccccCCcchhhhccC
Confidence 88888888888876655
No 92
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.13 E-value=0.026 Score=53.90 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=23.5
Q ss_pred CCccEEEEeecCCCcccchhhcCCCccceeEeeccc
Q 002780 723 KNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAY 758 (882)
Q Consensus 723 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 758 (882)
..++.++-+++.+.......+.+++.++.|.+.+|.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 345666667776666666666677777777666553
No 93
>PRK09087 hypothetical protein; Validated
Probab=89.49 E-value=4.4 Score=40.94 Aligned_cols=93 Identities=9% Similarity=0.013 Sum_probs=59.1
Q ss_pred EEEEEecCCCh----hhHHHhHHhcCCCCCCcEEEEecCc---------hHHHhhhccCCCcceeecCCCChHHHHHHHH
Q 002780 222 YMVVFDDVWKI----DFWGDVEHALLDNKKCSRIIVTTRH---------MNVAKYCKSSSSVHVHELETLPPNEARKLFC 288 (882)
Q Consensus 222 ~LlVLDdv~~~----~~~~~l~~~l~~~~~gs~IivTTR~---------~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~ 288 (882)
-+|++||+... +.+-.+...+.. .|..||+|++. +++...+... .+++++++++++-.+++.
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDALLSQVIF 163 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHHHHHHHHH
Confidence 37888999543 222222222222 35679998873 4555555544 789999999999999999
Q ss_pred HHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 002780 289 RKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVA 324 (882)
Q Consensus 289 ~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 324 (882)
+++-... ...+ +++..-|++.+.|-.-++..
T Consensus 164 ~~~~~~~--~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 164 KLFADRQ--LYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHcC--CCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 8885432 1112 45667777777776655553
No 94
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.16 E-value=0.48 Score=42.97 Aligned_cols=12 Identities=17% Similarity=0.348 Sum_probs=4.0
Q ss_pred hcCCCccceeEe
Q 002780 743 LQTLPNLLELRF 754 (882)
Q Consensus 743 l~~l~~L~~L~L 754 (882)
+.++++|+.+.+
T Consensus 54 F~~~~~l~~i~~ 65 (129)
T PF13306_consen 54 FSNCKSLESITF 65 (129)
T ss_dssp TTT-TT-EEEEE
T ss_pred eecccccccccc
Confidence 333434444444
No 95
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=88.96 E-value=2.5 Score=46.11 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=65.3
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCch-HHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-++|+||+... ...+.+...+..-..++.+|++|.+. .+....... ...+.+.+++.++..+++.......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SR--c~~i~l~~l~~~~i~~~L~~~~~~~- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSR--CRKLRLRPLAPEDVIDALAAAGPDL- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhcc--ceEEECCCCCHHHHHHHHHHhcccC-
Confidence 45668999999754 45677777776655566677776664 343333222 2789999999999999998764211
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVAV 325 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 325 (882)
+. .....++..++|.|+.+..+
T Consensus 217 -----~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 217 -----PD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred -----CH---HHHHHHHHHcCCCHHHHHHH
Confidence 11 12267899999999876555
No 96
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.66 E-value=0.034 Score=53.09 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=57.0
Q ss_pred cceeEeecccCCCeEEEccCCCcccceeEecccCCceeeEEc--CCCccCccEEEeecCCCcCcc-cccccccccCcEEE
Q 002780 749 LLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVIIE--KGAMPDIRELWIGPCPLLMEI-PIGIEHLKNLKLLV 825 (882)
Q Consensus 749 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~ 825 (882)
++.++-+++.+..+-...+..+++++.|.+.+|..+..|... -+-.|+|+.|+|++|+.+++- -..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344444454443322234567888999999999888876422 235799999999999987642 23566788999999
Q ss_pred EecCh
Q 002780 826 FAGMV 830 (882)
Q Consensus 826 l~~~~ 830 (882)
|.+.|
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 98875
No 97
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=88.00 E-value=5.2 Score=45.57 Aligned_cols=99 Identities=18% Similarity=0.092 Sum_probs=68.8
Q ss_pred hCCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEE-EecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcC
Q 002780 217 LKDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRII-VTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLG 293 (882)
Q Consensus 217 L~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~ 293 (882)
+.+++-++|+|+++.. ..|+.+...+....+.+++| +||+...+........ ..+++.+++.++....+.+.+-.
T Consensus 125 ~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc--~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 125 LQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRC--QRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred ccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcc--eEEEccCCCHHHHHHHHHHHHHH
Confidence 3457778999999874 56888888777655566654 5666666665444332 67999999999999999988854
Q ss_pred CCCCCCCChhHHHHHHHHHHHhCCChhHH
Q 002780 294 PSSGGCCPSELKELSQDILAKCGGLPLAI 322 (882)
Q Consensus 294 ~~~~~~~~~~~~~~~~~i~~~c~GlPLal 322 (882)
.+. .. -.+....|++.++|-+--+
T Consensus 203 egi--~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 203 ENL--KT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred cCC--CC---CHHHHHHHHHHcCCCHHHH
Confidence 331 11 1345667888998876433
No 98
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=86.90 E-value=3.2 Score=40.60 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=62.5
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCch-HHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+.+-++|+|++... +.++.+...+....+.+.+|++|++. .+........ ..+++.+++.++..+.+.+. + -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~--~~~~~~~~~~~~~~~~l~~~--g-i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRC--QVLPFPPLSEEALLQWLIRQ--G-I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhc--EEeeCCCCCHHHHHHHHHHc--C-C
Confidence 45668899998754 45777877777655566677766653 3333333222 68999999999988888776 1 1
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLA 321 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLa 321 (882)
. .+.+..|+..++|.|..
T Consensus 170 -----~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -----S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred -----C---HHHHHHHHHHcCCCccc
Confidence 1 35688999999998853
No 99
>PRK13342 recombination factor protein RarA; Reviewed
Probab=86.45 E-value=5.5 Score=44.52 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=62.3
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEE--ecCchH--HHhhhccCCCcceeecCCCChHHHHHHHHHHH
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIV--TTRHMN--VAKYCKSSSSVHVHELETLPPNEARKLFCRKV 291 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv--TTR~~~--v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 291 (882)
.+++.+|++|+++.. .+.+.+...+.. |..++| ||.+.. +........ .++.+.+++.++.+.++.+.+
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~--~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRA--QVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccc--eeeEeCCCCHHHHHHHHHHHH
Confidence 457889999999865 345555554432 444554 455432 211111111 689999999999999998865
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 002780 292 LGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG 326 (882)
Q Consensus 292 f~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 326 (882)
-..... . ..--.+....|++.|+|-|..+..+-
T Consensus 165 ~~~~~~-~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 165 EDKERG-L-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHhhcC-C-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 332110 0 01124567788999999887665443
No 100
>COG3899 Predicted ATPase [General function prediction only]
Probab=86.33 E-value=7.3 Score=47.71 Aligned_cols=222 Identities=15% Similarity=0.137 Sum_probs=125.3
Q ss_pred HHHHHhC-CceEEEEEecCCChh--hHHHhHHhcCCCCC----CcEEEE--ecCchHHHhhhccCCCcceeecCCCChHH
Q 002780 212 ALRDHLK-DKSYMVVFDDVWKID--FWGDVEHALLDNKK----CSRIIV--TTRHMNVAKYCKSSSSVHVHELETLPPNE 282 (882)
Q Consensus 212 ~l~~~L~-~kr~LlVLDdv~~~~--~~~~l~~~l~~~~~----gs~Iiv--TTR~~~v~~~~~~~~~~~~~~l~~L~~~~ 282 (882)
.+.-... .|+..+|+||+--.+ ..+-+......-.. -..|.. |.+.. +...-........+.|.||+..+
T Consensus 145 ~i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~-~~~~~~~~~~i~~I~L~PL~~~d 223 (849)
T COG3899 145 FIQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPT-LGEILKSATNITTITLAPLSRAD 223 (849)
T ss_pred HHHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccch-hhHHhhcCCceeEEecCcCchhh
Confidence 3444444 469999999994332 22222211111110 112333 33332 12111222234789999999999
Q ss_pred HHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCC-----ChHHHHHHHHHhccccCCCCChh
Q 002780 283 ARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNR-----VVSEWKKLFDRLGSILGSDPHLK 357 (882)
Q Consensus 283 ~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~-----~~~~w~~~l~~~~~~~~~~~~~~ 357 (882)
.-.+........ .....+....|+++-+|.|+=+.-+=..|....- ....|..=...+ ......+
T Consensus 224 ~~~lV~~~l~~~------~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i----~~~~~~~ 293 (849)
T COG3899 224 TNQLVAATLGCT------KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL----GILATTD 293 (849)
T ss_pred HHHHHHHHhCCc------ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc----CCchhhH
Confidence 999998876442 2334578899999999999988887777765311 122333211111 1111223
Q ss_pred hHHHHHHhccCCCCcchhHHHhhccccCCCceechHHHHHHHHHcCccccCCCCCHHHHHHHHHHHHHhCCcccccccCC
Q 002780 358 DCNRVLSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSKRDI 437 (882)
Q Consensus 358 ~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~~~~L~~~sll~~~~~~~ 437 (882)
.+...+..-.+.||...+...-..||+-.. |+.+.|...|-. ...+.+....+.|....++..++...
T Consensus 294 ~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr 361 (849)
T COG3899 294 AVVEFLAARLQKLPGTTREVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYR 361 (849)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccc
Confidence 455668888899999999999999998755 445555555421 34556666666666655554332111
Q ss_pred CCc---Ee-EeeccHHHHHHHHH
Q 002780 438 SGR---AR-ICQVHDLMHQIIIR 456 (882)
Q Consensus 438 ~g~---~~-~~~mhdlv~dla~~ 456 (882)
.+. .. +--.||.+++.|-.
T Consensus 362 ~~~~~~~~~Y~F~H~~vqqaaY~ 384 (849)
T COG3899 362 FGSNVDIATYKFLHDRVQQAAYN 384 (849)
T ss_pred cccccchhhHHhhHHHHHHHHhc
Confidence 111 11 11468888877643
No 101
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.30 E-value=2.6 Score=42.69 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=57.7
Q ss_pred EEEEEecCCChh---hHH-HhHHhcCC-CCCCcEEEEecCchH---------HHhhhccCCCcceeecCCCChHHHHHHH
Q 002780 222 YMVVFDDVWKID---FWG-DVEHALLD-NKKCSRIIVTTRHMN---------VAKYCKSSSSVHVHELETLPPNEARKLF 287 (882)
Q Consensus 222 ~LlVLDdv~~~~---~~~-~l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~~~~~l~~L~~~~~~~Lf 287 (882)
-+||+||+.... .|. .+...+.. ...+.+||+||+... +...+... ..++++++++++-..++
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~---~~i~l~~l~~~e~~~~l 168 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG---LVFQLPPLSDEEKIAAL 168 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC---eeEecCCCCHHHHHHHH
Confidence 389999998653 333 34333321 123447889887532 22233211 57899999999999988
Q ss_pred HHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 002780 288 CRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG 326 (882)
Q Consensus 288 ~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 326 (882)
...+-...- ..+ .+..+.+++.+.|.|..+.-+-
T Consensus 169 ~~~~~~~~~--~~~---~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 169 QSRAARRGL--QLP---DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHHcCC--CCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 775532211 111 3455677777888877665543
No 102
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.25 E-value=0.63 Score=28.58 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=13.1
Q ss_pred CCCCcEEEccCccccccchhh
Q 002780 569 LLSLETLNMKNTLVRELPVEI 589 (882)
Q Consensus 569 L~~L~~L~L~~~~l~~lp~~i 589 (882)
|++|++|+|++|.+..+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356666666666666666543
No 103
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.25 E-value=0.63 Score=28.58 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=13.1
Q ss_pred CCCCcEEEccCccccccchhh
Q 002780 569 LLSLETLNMKNTLVRELPVEI 589 (882)
Q Consensus 569 L~~L~~L~L~~~~l~~lp~~i 589 (882)
|++|++|+|++|.+..+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356666666666666666543
No 104
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=85.63 E-value=5.2 Score=43.38 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=64.8
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcE-EEEecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSR-IIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~-IivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-++|+|++... ...+.+...+..-..+.. |++|++-..+........ ..+.+.+++.++..+.+.+.....
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc--~~i~l~pl~~~~~~~~L~~~~~~~- 216 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRC--QPISLKPLDDDELKKALSHLGSSQ- 216 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhc--cEEEecCCCHHHHHHHHHHhhccc-
Confidence 56668999999864 456677776665444444 455555444443333322 689999999999999998743211
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVAVG 326 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 326 (882)
. --.+....|++.++|.|..+..+.
T Consensus 217 -----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 217 -----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred -----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 113446789999999998766543
No 105
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.52 E-value=0.53 Score=28.92 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=13.7
Q ss_pred ccCCcEEEEecCCCccccccc
Q 002780 546 LFNLHYLSLRNTKVKIIPTSI 566 (882)
Q Consensus 546 l~~Lr~L~L~~~~l~~lp~~i 566 (882)
|.+|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777776653
No 106
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.52 E-value=0.53 Score=28.92 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=13.7
Q ss_pred ccCCcEEEEecCCCccccccc
Q 002780 546 LFNLHYLSLRNTKVKIIPTSI 566 (882)
Q Consensus 546 l~~Lr~L~L~~~~l~~lp~~i 566 (882)
|.+|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777776653
No 107
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=83.26 E-value=5.8 Score=46.67 Aligned_cols=115 Identities=12% Similarity=-0.010 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhCCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEE--ecCchHH-HhhhccCCCcceeecCCCChH
Q 002780 207 MELITALRDHLKDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIV--TTRHMNV-AKYCKSSSSVHVHELETLPPN 281 (882)
Q Consensus 207 ~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v-~~~~~~~~~~~~~~l~~L~~~ 281 (882)
...+..|.+.+++++++++.|+.|.. ..|+.+...+....+...|+| ||++... ....... ...+.+.+++.+
T Consensus 279 ~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR--~~~i~~~pls~e 356 (615)
T TIGR02903 279 PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSR--CAEVFFEPLTPE 356 (615)
T ss_pred HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhc--eeEEEeCCCCHH
Confidence 34678899999999999998877765 458888877776666666666 6775432 1111111 146788999999
Q ss_pred HHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHH
Q 002780 282 EARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGL 328 (882)
Q Consensus 282 ~~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~ 328 (882)
|.+.++.+.+-.... ... .++.+.|++++..-+-|+..++..
T Consensus 357 di~~Il~~~a~~~~v--~ls---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 357 DIALIVLNAAEKINV--HLA---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHHHcCC--CCC---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 999999987653221 111 345555666665556666655544
No 108
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.47 E-value=11 Score=43.74 Aligned_cols=101 Identities=11% Similarity=0.104 Sum_probs=67.3
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcE-EEEecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSR-IIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~-IivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.++.-++|+|++... ..++.+...+..-..+.+ |++||....+...+..-+ ..+.++.++.++..+.+.+.+-..
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRC--q~f~f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC--LQFNLKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHH--HhcccCCCChHHHHHHHHHHHHHc
Confidence 456668999999765 567888877765444545 556666665554333222 689999999999999888776432
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 002780 295 SSGGCCPSELKELSQDILAKCGGLPLAIVAV 325 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 325 (882)
+. . --.+..+.|++.++|.|..+..+
T Consensus 200 gi--~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 200 GI--A---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CC--C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 21 1 11345578899999998655443
No 109
>PRK08727 hypothetical protein; Validated
Probab=79.85 E-value=8.1 Score=39.30 Aligned_cols=93 Identities=9% Similarity=-0.031 Sum_probs=57.8
Q ss_pred eEEEEEecCCCh---hhHHHhHHhcCC--CCCCcEEEEecCc---------hHHHhhhccCCCcceeecCCCChHHHHHH
Q 002780 221 SYMVVFDDVWKI---DFWGDVEHALLD--NKKCSRIIVTTRH---------MNVAKYCKSSSSVHVHELETLPPNEARKL 286 (882)
Q Consensus 221 r~LlVLDdv~~~---~~~~~l~~~l~~--~~~gs~IivTTR~---------~~v~~~~~~~~~~~~~~l~~L~~~~~~~L 286 (882)
--+||+||+... ..|+...-.+.+ ...|..||+||+. +++.+.+... .++++++++.++-.++
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~---~~~~l~~~~~e~~~~i 170 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC---IRIGLPVLDDVARAAV 170 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC---ceEEecCCCHHHHHHH
Confidence 358999999743 234332222211 1246679999984 3344443332 6899999999999999
Q ss_pred HHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhH
Q 002780 287 FCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLA 321 (882)
Q Consensus 287 f~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 321 (882)
+.++|....- ..+ ++...-|++.|.|-.-+
T Consensus 171 L~~~a~~~~l--~l~---~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 171 LRERAQRRGL--ALD---EAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHHHHHcCC--CCC---HHHHHHHHHhCCCCHHH
Confidence 9998865321 111 35667777778765433
No 110
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=78.69 E-value=32 Score=38.13 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=50.9
Q ss_pred ceEEEEEecCCChhhHHHhHHhcCCCCCCcEEEEecCchHHHhhhcc---CCCcceeecCCCChHHHHHH
Q 002780 220 KSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKS---SSSVHVHELETLPPNEARKL 286 (882)
Q Consensus 220 kr~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~---~~~~~~~~l~~L~~~~~~~L 286 (882)
++..|+||.|.....|+.....+.+.++. +|+||+-+..+...... .+-...+++-||+..|...+
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 67899999999999999988888887777 89999888655432211 11236899999999998763
No 111
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=77.92 E-value=15 Score=39.37 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=63.4
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCch-HHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+.|+. |+|++... +..+.+...+..-..++.+|.||.+. .+.....+-. ..+.+.+++.+++.+.+.... ...
T Consensus 106 ~~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc--~~~~~~~~~~~~~~~~L~~~~-~~~ 181 (328)
T PRK05707 106 GRKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRC--QQQACPLPSNEESLQWLQQAL-PES 181 (328)
T ss_pred CCeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhc--eeeeCCCcCHHHHHHHHHHhc-ccC
Confidence 45555 56999764 56777877777655667777777664 3443332222 679999999999998887653 111
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVAV 325 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 325 (882)
..+.+..++..++|.|+.+..+
T Consensus 182 --------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --------ChHHHHHHHHHcCCCHHHHHHH
Confidence 1234567789999999866554
No 112
>PRK08084 DNA replication initiation factor; Provisional
Probab=77.59 E-value=9.8 Score=38.74 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=55.6
Q ss_pred EEEEEecCCCh---hhHHHhH-HhcCC-CCCC-cEEEEecCch---------HHHhhhccCCCcceeecCCCChHHHHHH
Q 002780 222 YMVVFDDVWKI---DFWGDVE-HALLD-NKKC-SRIIVTTRHM---------NVAKYCKSSSSVHVHELETLPPNEARKL 286 (882)
Q Consensus 222 ~LlVLDdv~~~---~~~~~l~-~~l~~-~~~g-s~IivTTR~~---------~v~~~~~~~~~~~~~~l~~L~~~~~~~L 286 (882)
-+|++||+... .+|+... ..+.. ...| .++|+||+.. ++.+.+... .+++++++++++-.++
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g---~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG---QIYKLQPLSDEEKLQA 175 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC---ceeeecCCCHHHHHHH
Confidence 37899999653 3454322 22211 1123 3699998753 455565544 7899999999999999
Q ss_pred HHHHHcCCCCCCCCChhHHHHHHHHHHHhCCCh
Q 002780 287 FCRKVLGPSSGGCCPSELKELSQDILAKCGGLP 319 (882)
Q Consensus 287 f~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlP 319 (882)
+.++|.... -.. -+++..-|++.+.|-.
T Consensus 176 l~~~a~~~~--~~l---~~~v~~~L~~~~~~d~ 203 (235)
T PRK08084 176 LQLRARLRG--FEL---PEDVGRFLLKRLDREM 203 (235)
T ss_pred HHHHHHHcC--CCC---CHHHHHHHHHhhcCCH
Confidence 888775432 111 1456666777776543
No 113
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.58 E-value=15 Score=40.14 Aligned_cols=97 Identities=11% Similarity=0.069 Sum_probs=64.8
Q ss_pred CceEEEEEecCCChh--hHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKID--FWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-++|+|++.... .++.+...+.......++|++|.+ ..+........ ..+++.+++.++..+.+.+.+-..+
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc--~~~~~~~l~~~el~~~L~~~~~~~g 195 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRC--LQFKLKIISEEKIFNFLKYILIKES 195 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhc--eEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 455689999998653 577787777766666677766654 34443332222 6899999999999888877664432
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAI 322 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal 322 (882)
. .. -.+....|++.++|-|-.+
T Consensus 196 ~--~i---~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 196 I--DT---DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred C--CC---CHHHHHHHHHHcCCCHHHH
Confidence 1 11 1356677899999987543
No 114
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=76.18 E-value=51 Score=39.29 Aligned_cols=100 Identities=11% Similarity=0.070 Sum_probs=66.8
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCch-HHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
++.-++|||++... ..|+.+...+..-....++|+||.+. .|...+..-+ ..+.++.++.++..+.+.+.+-..+
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC--q~f~Fk~Ls~eeIv~~L~~Il~~Eg 195 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC--LQFNLKQMPAGHIVSHLERILGEER 195 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe--EEEecCCcCHHHHHHHHHHHHHHcC
Confidence 45557889999865 45888888777666677777766663 3432222222 6899999999999999888764332
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCh-hHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLP-LAIVAV 325 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlP-Lal~~~ 325 (882)
- .--.+..+.|++.++|-. -|+..+
T Consensus 196 I-----~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 196 I-----AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred C-----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 112456778899998854 455543
No 115
>PLN03025 replication factor C subunit; Provisional
Probab=75.51 E-value=20 Score=38.45 Aligned_cols=94 Identities=11% Similarity=0.086 Sum_probs=59.1
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
++.-++|||++... ...+.+...+....+.+++|+||.. ..+........ ..++++++++++....+.+.+-..+
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc--~~i~f~~l~~~~l~~~L~~i~~~eg 175 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC--AIVRFSRLSDQEILGRLMKVVEAEK 175 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh--hcccCCCCCHHHHHHHHHHHHHHcC
Confidence 45668999999765 3445555555544556777776644 22222221111 5789999999999988888775432
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCh
Q 002780 296 SGGCCPSELKELSQDILAKCGGLP 319 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlP 319 (882)
- ..+ .+....|++.|+|-.
T Consensus 176 i--~i~---~~~l~~i~~~~~gDl 194 (319)
T PLN03025 176 V--PYV---PEGLEAIIFTADGDM 194 (319)
T ss_pred C--CCC---HHHHHHHHHHcCCCH
Confidence 1 111 345678888888754
No 116
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=75.36 E-value=21 Score=38.93 Aligned_cols=100 Identities=11% Similarity=0.112 Sum_probs=65.2
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCchH-HHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRHMN-VAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-++|+|++... ..++.+...+....+.+.+|++|.+.. +........ ..+++.++++++..+.+...+-..+
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~--~~~~~~~~~~~~l~~~l~~~~~~~g 193 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRC--QRFDFKRIPLEDIVERLKKILDKEG 193 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhhe--eEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 44558889998654 557777777765555667666665433 333332222 5788999999998888887764432
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVAV 325 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 325 (882)
. ..+ .+....+++.++|-|-.+...
T Consensus 194 ~--~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 194 I--KIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred C--CCC---HHHHHHHHHHcCCChHHHHHH
Confidence 1 111 367788899999988655444
No 117
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=75.23 E-value=17 Score=39.22 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=58.3
Q ss_pred HhCCceEEEEEecCCChh--hHHHhHHhcCCCCCCcEEEE--ecCchH------HHhhhccCCCcceeecCCCChHHHHH
Q 002780 216 HLKDKSYMVVFDDVWKID--FWGDVEHALLDNKKCSRIIV--TTRHMN------VAKYCKSSSSVHVHELETLPPNEARK 285 (882)
Q Consensus 216 ~L~~kr~LlVLDdv~~~~--~~~~l~~~l~~~~~gs~Iiv--TTR~~~------v~~~~~~~~~~~~~~l~~L~~~~~~~ 285 (882)
...|+|.+|.+|.|-.-+ |-+. .+|.-.+|.-|+| ||-+.. +.+.+ .++++++|+.+|-.+
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~ALlSR~------~vf~lk~L~~~di~~ 170 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPALLSRA------RVFELKPLSSEDIKK 170 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHHhhhh------heeeeecCCHHHHHH
Confidence 355899999999997543 3332 2444556777776 777753 22222 799999999999999
Q ss_pred HHHHHHcCCCCCCC-CChhH-HHHHHHHHHHhCCC
Q 002780 286 LFCRKVLGPSSGGC-CPSEL-KELSQDILAKCGGL 318 (882)
Q Consensus 286 Lf~~~af~~~~~~~-~~~~~-~~~~~~i~~~c~Gl 318 (882)
+..+-+-....... ....+ ++.-.-++..+.|=
T Consensus 171 ~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD 205 (436)
T COG2256 171 LLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD 205 (436)
T ss_pred HHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCch
Confidence 99884332221100 01112 34556677777774
No 118
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=74.94 E-value=20 Score=39.61 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=62.9
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-++|+|++... ...+.+...+....++..+|++|.+ ..+...+..-. ..+.+++++.++..+.+.... +
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc--~~i~f~~~~~~~i~~~L~~~~-~-- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRC--RHVALRTPSVEAVAEVLVRRD-G-- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhC--eEEECCCCCHHHHHHHHHHhc-C--
Confidence 44457778999765 4556677766655556666666655 34443333222 689999999999988887532 1
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVAV 325 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 325 (882)
.+ .+.+..++..++|-|..+..+
T Consensus 191 ----~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 191 ----VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 11 345778999999999765444
No 119
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.94 E-value=17 Score=41.68 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=68.6
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEec-CchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTT-RHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-++|+|+++.. ..++.+...+....+...+|++| ....+...+.... ..+++.++++++..+.+.+.+-..+
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc--~~~~f~~ls~~el~~~L~~i~~~eg 192 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT--QHFRFRRLTEEEIAGKLRRLLEAEG 192 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce--EEEEecCCCHHHHHHHHHHHHHHcC
Confidence 45668899999865 46888887777655555555544 4444433333222 6899999999999999998875543
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChh-HHHHHHHHh
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPL-AIVAVGGLL 329 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g~~L 329 (882)
. . --.+....|++.++|.+- |+..+-..+
T Consensus 193 i--~---i~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 193 R--E---AEPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred C--C---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 1 123567889999999874 444443433
No 120
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=73.17 E-value=15 Score=39.77 Aligned_cols=97 Identities=11% Similarity=0.037 Sum_probs=60.3
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+.+-+||+||+... +..+.+...+......+++|+||.. ..+....... ...+++.+++.++....+.+.+-..+
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr--~~~v~~~~~~~~~~~~~l~~~~~~~~ 201 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSR--CLPLFFRAPTDDELVDVLESIAEAEG 201 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCC--ceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 34458999999754 3345565555544555778777654 3232222222 15788999999999888888764432
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAI 322 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal 322 (882)
. .. -.+....+++.++|-+-.+
T Consensus 202 ~--~~---~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 202 V--DY---DDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred C--CC---CHHHHHHHHHHcCCCHHHH
Confidence 1 11 1456778888888865444
No 121
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=72.76 E-value=0.15 Score=57.53 Aligned_cols=164 Identities=20% Similarity=0.220 Sum_probs=79.7
Q ss_pred ccccCCceeeEEEecCCCCCC-----CccccCCc-cCCcEEEEecCCCc-----cccccccCCCCCcEEEccCcccc---
Q 002780 518 ASIANFKLIKVLDLEDAPVDY-----LPEGVGNL-FNLHYLSLRNTKVK-----IIPTSIGNLLSLETLNMKNTLVR--- 583 (882)
Q Consensus 518 ~~~~~~~~Lr~L~L~~~~i~~-----lp~~i~~l-~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~l~--- 583 (882)
..+.....|..|++++|.+.. +-..+... ..|++|.+..|.++ .+++.+.....|+.+|++.|.+.
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence 344555666667777777651 11122222 44666666666554 34445555666777777766432
Q ss_pred --ccchhhh----cccccCeeecccccccCCCchhhhhhhccccCcccCCcc-cccccceecC--HH----hHHHhcCC-
Q 002780 584 --ELPVEIR----NLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTN-LQKLSIIEAD--SQ----VLKELMKL- 649 (882)
Q Consensus 584 --~lp~~i~----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~-L~~L~l~~~~--~~----~~~~l~~l- 649 (882)
.++..+. ...++++|++.+|.++.. ....+-..+...+. +..|++..+. .. ..+.+..+
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~-------~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~ 261 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRCGVTSS-------SCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLS 261 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhcCcChH-------HHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccc
Confidence 1222222 355666676666554421 01111112233333 4445555441 11 12223333
Q ss_pred CCCcEEEEEecCCC---chhHHHHhccCCCCCEEEEeecCCc
Q 002780 650 RQLRMLSIRPQNGN---GKDLCALITNLENLETLTVEMTSKE 688 (882)
Q Consensus 650 ~~L~~L~l~~~~~~---~~~l~~~l~~l~~L~~L~l~~~~~~ 688 (882)
..++.++++.|.+. ...+...+..++.++.|.++.|...
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 45566666654332 2334555556666666666666543
No 122
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=72.46 E-value=11 Score=37.79 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=53.2
Q ss_pred HHHHhCCceEEEEEecCCCh---hhHHHh-HHhcCC-CCCCcEEEEecCc---------hHHHhhhccCCCcceeecCCC
Q 002780 213 LRDHLKDKSYMVVFDDVWKI---DFWGDV-EHALLD-NKKCSRIIVTTRH---------MNVAKYCKSSSSVHVHELETL 278 (882)
Q Consensus 213 l~~~L~~kr~LlVLDdv~~~---~~~~~l-~~~l~~-~~~gs~IivTTR~---------~~v~~~~~~~~~~~~~~l~~L 278 (882)
+++.+++ -=+|++|||... ..|+.. ...+.. ...|-+||+|++. +++.+.+... .+++++++
T Consensus 91 ~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G---l~~~l~~p 166 (219)
T PF00308_consen 91 FKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG---LVVELQPP 166 (219)
T ss_dssp HHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS---EEEEE---
T ss_pred hhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc---chhhcCCC
Confidence 3344443 337789999764 234332 222221 1246689999854 2344555443 78999999
Q ss_pred ChHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCC
Q 002780 279 PPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGL 318 (882)
Q Consensus 279 ~~~~~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~Gl 318 (882)
++++-.+++.++|-...- . --+++..-|++.+.+-
T Consensus 167 d~~~r~~il~~~a~~~~~--~---l~~~v~~~l~~~~~~~ 201 (219)
T PF00308_consen 167 DDEDRRRILQKKAKERGI--E---LPEEVIEYLARRFRRD 201 (219)
T ss_dssp -HHHHHHHHHHHHHHTT-------S-HHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHHHhCC--C---CcHHHHHHHHHhhcCC
Confidence 999999999998865431 1 1234555566655443
No 123
>PRK05642 DNA replication initiation factor; Validated
Probab=71.91 E-value=19 Score=36.59 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=55.7
Q ss_pred EEEEecCCCh---hhHHH-hHHhcCC-CCCCcEEEEecCch---------HHHhhhccCCCcceeecCCCChHHHHHHHH
Q 002780 223 MVVFDDVWKI---DFWGD-VEHALLD-NKKCSRIIVTTRHM---------NVAKYCKSSSSVHVHELETLPPNEARKLFC 288 (882)
Q Consensus 223 LlVLDdv~~~---~~~~~-l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~ 288 (882)
+||+||+... ..|+. +...+.. ...|.+||+||+.. ++.+.+... .+++++++++++-.+...
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g---l~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA---LVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC---eeeecCCCCHHHHHHHHH
Confidence 6788999633 35644 3333321 12466789988752 223333322 678999999999999999
Q ss_pred HHHcCCCCCCCCChhHHHHHHHHHHHhCCChhH
Q 002780 289 RKVLGPSSGGCCPSELKELSQDILAKCGGLPLA 321 (882)
Q Consensus 289 ~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 321 (882)
.++.... ...+ +++..-|++++.|-.-+
T Consensus 177 ~ka~~~~--~~l~---~ev~~~L~~~~~~d~r~ 204 (234)
T PRK05642 177 LRASRRG--LHLT---DEVGHFILTRGTRSMSA 204 (234)
T ss_pred HHHHHcC--CCCC---HHHHHHHHHhcCCCHHH
Confidence 7775532 1112 36667777777665433
No 124
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=71.75 E-value=1.7e+02 Score=35.71 Aligned_cols=194 Identities=10% Similarity=0.106 Sum_probs=91.7
Q ss_pred eEEEEEecCCChh--hHHHhHHhcCC-CCCCcEEEE--ecCc--------hHHHhhhccCCCcceeecCCCChHHHHHHH
Q 002780 221 SYMVVFDDVWKID--FWGDVEHALLD-NKKCSRIIV--TTRH--------MNVAKYCKSSSSVHVHELETLPPNEARKLF 287 (882)
Q Consensus 221 r~LlVLDdv~~~~--~~~~l~~~l~~-~~~gs~Iiv--TTR~--------~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf 287 (882)
..+||||+|+... .=+.|...+.+ ...+++|+| +|.+ ..+...++. ..+..+|.+.++-.+++
T Consensus 870 v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~----eeIvF~PYTaEQL~dIL 945 (1164)
T PTZ00112 870 VSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAF----GRLVFSPYKGDEIEKII 945 (1164)
T ss_pred ceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhcccc----ccccCCCCCHHHHHHHH
Confidence 3589999997542 11112222221 124566655 3332 222222321 34667999999999999
Q ss_pred HHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCC---ChHHHHHHHHHhccccCCCCChhhHHHHHH
Q 002780 288 CRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNR---VVSEWKKLFDRLGSILGSDPHLKDCNRVLS 364 (882)
Q Consensus 288 ~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~---~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~ 364 (882)
..+|-... ....+..++-+|+.++..-|-.=.||.++-.....+.. +.+.-..+.+.+. ...+.
T Consensus 946 k~RAe~A~-gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAleeiE------------~srI~ 1012 (1164)
T PTZ00112 946 KERLENCK-EIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLF------------DSPLT 1012 (1164)
T ss_pred HHHHHhCC-CCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHH------------hhhHH
Confidence 99886431 11223344445555554445556666666544432211 1122222222111 01112
Q ss_pred hccCCCCcchhHHHhhccccCC---CceechHHHHHHH--HHc--C-ccccCCCCCHHHHHHHHHHHHHhCCcccccc
Q 002780 365 EGYYALPHHLKSCLLSFGLFQE---SCKVNCARLIRLW--IAE--G-FVQYSKRPTSEQVAEEYLNELIDRSLVQVSK 434 (882)
Q Consensus 365 ~sy~~L~~~~k~cfl~~s~fp~---~~~i~~~~li~~W--~a~--g-~i~~~~~~~~e~~~~~~~~~L~~~sll~~~~ 434 (882)
-.-..||.+.|-.++-+...-+ ...+...++.... +++ | .+ +....-+...+|+.+|...++|-..+
T Consensus 1013 e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i---Gv~plTqRV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1013 NAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI---GMCSNNELFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc---CCCCcHHHHHHHHHHHHhcCeEEecC
Confidence 2235688876655443332211 1134444443322 222 1 11 11111125677788888888876654
No 125
>PRK06620 hypothetical protein; Validated
Probab=71.01 E-value=20 Score=35.83 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=51.0
Q ss_pred eEEEEEecCCChhhHHHhHHhcCC-CCCCcEEEEecCch-------HHHhhhccCCCcceeecCCCChHHHHHHHHHHHc
Q 002780 221 SYMVVFDDVWKIDFWGDVEHALLD-NKKCSRIIVTTRHM-------NVAKYCKSSSSVHVHELETLPPNEARKLFCRKVL 292 (882)
Q Consensus 221 r~LlVLDdv~~~~~~~~l~~~l~~-~~~gs~IivTTR~~-------~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af 292 (882)
.-++++|||....+ ..+...+.. ...|..||+|++.. ++.+.+... .+++++++++++-..+..+.+-
T Consensus 86 ~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~g---l~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 86 YNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSV---LSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCC---ceEeeCCCCHHHHHHHHHHHHH
Confidence 35788999963221 112111110 13466899998742 334444332 5899999999998888877764
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhCCC
Q 002780 293 GPSSGGCCPSELKELSQDILAKCGGL 318 (882)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~i~~~c~Gl 318 (882)
... -..+ +++..-|++++.|-
T Consensus 162 ~~~--l~l~---~ev~~~L~~~~~~d 182 (214)
T PRK06620 162 ISS--VTIS---RQIIDFLLVNLPRE 182 (214)
T ss_pred HcC--CCCC---HHHHHHHHHHccCC
Confidence 321 0111 35566666666543
No 126
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.29 E-value=2.4 Score=26.00 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=10.3
Q ss_pred CCcEEEEecCCCccccc
Q 002780 548 NLHYLSLRNTKVKIIPT 564 (882)
Q Consensus 548 ~Lr~L~L~~~~l~~lp~ 564 (882)
+|++|++++|+++.||+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666664
No 127
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=70.13 E-value=38 Score=39.96 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=61.5
Q ss_pred CceEEEEEecCCChh--hHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKID--FWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-++|+|++.... ..+.+...+..-....++|++|.+ ..+........ ..+.+.+++.++....+.+.+-..+
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC--~~f~f~~Ls~eeI~~~L~~Il~kEg 195 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRC--LQFVLRNMTAQQVADHLAHVLDSEK 195 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHH--hhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 566689999997643 466677666554445566666544 33332221111 5688889999999888887664432
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIV 323 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~ 323 (882)
. .--.+....|++.++|-+--+.
T Consensus 196 i-----~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 196 I-----AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred C-----CcCHHHHHHHHHHhCCCHHHHH
Confidence 1 1123567889999998874433
No 128
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=69.68 E-value=0.096 Score=58.98 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=85.2
Q ss_pred ceeeEEEecCCCCC-----CCccccCCccCCcEEEEecCCCcc-----ccccccCC-CCCcEEEccCcccc-----ccch
Q 002780 524 KLIKVLDLEDAPVD-----YLPEGVGNLFNLHYLSLRNTKVKI-----IPTSIGNL-LSLETLNMKNTLVR-----ELPV 587 (882)
Q Consensus 524 ~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~l~~-----lp~~i~~L-~~L~~L~L~~~~l~-----~lp~ 587 (882)
..+..|.|.+|.+. .+-..+..+.+|..|++++|.+.. +-+.+-.. ..|++|++..|.+. .++.
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 34777888888775 233456677888889998888761 11122222 45677777666443 3445
Q ss_pred hhhcccccCeeecccccccCCCchhhhhhhccccCc----ccCCcccccccceecCHH------hHHHhcCCCC-CcEEE
Q 002780 588 EIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGG----FGSLTNLQKLSIIEADSQ------VLKELMKLRQ-LRMLS 656 (882)
Q Consensus 588 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~----i~~l~~L~~L~l~~~~~~------~~~~l~~l~~-L~~L~ 656 (882)
.+.....|+.++++.|.+... ....++.. +....++++|++..+... .-..+...+. +..|+
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~-------g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~ 239 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIEL-------GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELD 239 (478)
T ss_pred HHhcccchhHHHHHhcccchh-------hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHH
Confidence 566677788888877765311 11122222 334667777777776311 1122334444 44566
Q ss_pred EEecCCCch---hHHHHhccC-CCCCEEEEeecCCc
Q 002780 657 IRPQNGNGK---DLCALITNL-ENLETLTVEMTSKE 688 (882)
Q Consensus 657 l~~~~~~~~---~l~~~l~~l-~~L~~L~l~~~~~~ 688 (882)
+..|..... .+...+..+ ..++.++++.|.+.
T Consensus 240 l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~ 275 (478)
T KOG4308|consen 240 LASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSIT 275 (478)
T ss_pred HHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence 655544322 223333333 44555555555443
No 129
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=68.78 E-value=81 Score=34.76 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=95.6
Q ss_pred eEEEEEecCCCh---hhHHH-hHHhcCC-CCCCcEEEEecCc---------hHHHhhhccCCCcceeecCCCChHHHHHH
Q 002780 221 SYMVVFDDVWKI---DFWGD-VEHALLD-NKKCSRIIVTTRH---------MNVAKYCKSSSSVHVHELETLPPNEARKL 286 (882)
Q Consensus 221 r~LlVLDdv~~~---~~~~~-l~~~l~~-~~~gs~IivTTR~---------~~v~~~~~~~~~~~~~~l~~L~~~~~~~L 286 (882)
-=++++||++-. +.|+. +-..|.. ...|-.||+|++. ..+.+.+... -++++.+++.+.....
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G---l~~~I~~Pd~e~r~ai 252 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG---LVVEIEPPDDETRLAI 252 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce---eEEeeCCCCHHHHHHH
Confidence 338899999753 23322 2222221 1233489999854 3555555544 7899999999999999
Q ss_pred HHHHHcCCCCCCCCC-hhHHHHHHHHHHHhCCChhHHHHHHHH--hcCCCCChHHHHHHHHHhccccCCCCChhhHHHHH
Q 002780 287 FCRKVLGPSSGGCCP-SELKELSQDILAKCGGLPLAIVAVGGL--LSSKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVL 363 (882)
Q Consensus 287 f~~~af~~~~~~~~~-~~~~~~~~~i~~~c~GlPLal~~~g~~--L~~~~~~~~~w~~~l~~~~~~~~~~~~~~~i~~~l 363 (882)
+.++|....- ..+ +-..-+++.+-+-..-+.=|+..+..+ ...+.-+...-..++..+...... ...+.|..+.
T Consensus 253 L~kka~~~~~--~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~-itie~I~~~V 329 (408)
T COG0593 253 LRKKAEDRGI--EIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEK-ITIEDIQKIV 329 (408)
T ss_pred HHHHHHhcCC--CCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhccccc-CCHHHHHHHH
Confidence 9997765542 222 222233333333333333344333222 111111233333344333222111 2222232222
Q ss_pred HhccCCCCcchhHHHhhccccCCCceechHHHHHHHHHcCccccCCCCCHHHHHHHHHHHHHhCCcccccccCCCCcEeE
Q 002780 364 SEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSKRDISGRARI 443 (882)
Q Consensus 364 ~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~e~~~~~~~~~L~~~sll~~~~~~~~g~~~~ 443 (882)
.-- |.++.+++.. --..+.-..+.++|-....+|.+.||.+.... .|+..+
T Consensus 330 a~~---------------------y~v~~~dl~s------~~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~--FgrdHt 380 (408)
T COG0593 330 AEY---------------------YNVKVSDLLS------KSRTRNIVRPRQIAMYLARELTNLSLPEIGKA--FGRDHT 380 (408)
T ss_pred HHH---------------------hCCCHHHhhc------cccccccchHHHHHHHHHHHHccCcHHHHHHH--hCCCcc
Confidence 111 2233323210 01112234577888888899999999988653 334444
Q ss_pred eecc
Q 002780 444 CQVH 447 (882)
Q Consensus 444 ~~mh 447 (882)
-.||
T Consensus 381 TV~~ 384 (408)
T COG0593 381 TVLH 384 (408)
T ss_pred HHHH
Confidence 4444
No 130
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.13 E-value=25 Score=41.02 Aligned_cols=106 Identities=8% Similarity=0.087 Sum_probs=68.9
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEec-CchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTT-RHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.+++-+||+|++... +.++.|...+..-.....+|++| ....+........ ..+++.+++.++....+...+...
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRc--q~i~F~pLs~~eL~~~L~~il~~e 194 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRC--QHFTFTRLSEAGLEAHLTKVLGRE 194 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhh--hccccCCCCHHHHHHHHHHHHHHc
Confidence 456678999999754 45777777765543445555544 4455543322211 578999999999998888876543
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCC-hhHHHHHHHHhc
Q 002780 295 SSGGCCPSELKELSQDILAKCGGL-PLAIVAVGGLLS 330 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~Gl-PLal~~~g~~L~ 330 (882)
+. .. -.+....|++.++|- --|+..+...+.
T Consensus 195 gi--~i---d~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 195 GV--DY---DPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred CC--CC---CHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 21 11 135677888999985 477777766553
No 131
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.81 E-value=32 Score=39.66 Aligned_cols=102 Identities=11% Similarity=0.083 Sum_probs=64.6
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEE-EecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRII-VTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.+++-++|+|++... ..++.+...+......+++| +||....+.......+ .++++.+++.++-...+.+.+-..
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc--~~~~f~~Ls~~eI~~~L~~il~~e 194 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC--IQLHLKHISQADIKDQLKIILAKE 194 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhe--eeEEeCCCCHHHHHHHHHHHHHHc
Confidence 456679999999754 46778888777665566555 5655544543322222 789999999999887777654332
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCCh-hHHHHHH
Q 002780 295 SSGGCCPSELKELSQDILAKCGGLP-LAIVAVG 326 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~GlP-Lal~~~g 326 (882)
+- .--.+....|++.++|-+ -|+..+-
T Consensus 195 gi-----~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 195 NI-----NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred CC-----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 112345677888888855 3444443
No 132
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.43 E-value=60 Score=38.12 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=65.2
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCch-HHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.+++-++|+|+|... ..++.+...+.....+.++|++|.+. .+........ ..+++++++.++..+.+.+.+-..
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRC--q~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRC--LQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhh--heeeccCCCHHHHHHHHHHHHHHc
Confidence 356668899999764 46777777776655566777766553 3322211111 689999999999988888776543
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 002780 295 SSGGCCPSELKELSQDILAKCGGLPLAIVA 324 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 324 (882)
+. .--.+....|++.++|-+-.+..
T Consensus 194 gI-----~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 194 QI-----AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred CC-----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 21 11235567888999987754443
No 133
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.37 E-value=26 Score=38.88 Aligned_cols=101 Identities=14% Similarity=0.090 Sum_probs=65.2
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEe-cCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVT-TRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivT-TR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-++|+|++... ..++.+...+....+.+.+|++ ++...+........ .++++.++++++..+.+...+-..+
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~--~~v~f~~l~~~ei~~~l~~~~~~~g 203 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRC--QRFNFKRIPLEEIQQQLQGICEAEG 203 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHH--HHhhcCCCCHHHHHHHHHHHHHHcC
Confidence 45567899999754 4688888887766666766554 45455544332211 5788999999998887777653221
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChh-HHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPL-AIVAVG 326 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g 326 (882)
. .--.+.+..|+..++|-+- |+..+-
T Consensus 204 ~-----~i~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 204 I-----SVDADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred C-----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 1114667889999999664 444433
No 134
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=63.97 E-value=1.2 Score=26.72 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=10.4
Q ss_pred CCccEEEEeecCCCcccch
Q 002780 723 KNLIRLGLDLSGLTEEPIR 741 (882)
Q Consensus 723 ~~L~~L~L~~~~l~~~~~~ 741 (882)
++|++|+|++|.++...+.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 5677777777776544443
No 135
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.78 E-value=50 Score=38.84 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=63.9
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEE-EecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRII-VTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++=++|+|++... ...+.+...+..-...+.+| +|++...+.......+ .++++.+++.++....+.+.+-..+
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc--~~vef~~l~~~ei~~~L~~i~~~eg 203 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRC--QRFNFKRIPLDEIQSQLQMICRAEG 203 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhc--eEEecCCCCHHHHHHHHHHHHHHcC
Confidence 44456899998764 45777777777655555554 5555555554433322 7899999999998877776554322
Q ss_pred CCCCCChhHHHHHHHHHHHhCCC-hhHHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGL-PLAIVAVG 326 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~Gl-PLal~~~g 326 (882)
. .. -.+.+..|+..++|- -.|+..+-
T Consensus 204 i--~I---~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 204 I--QI---DADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred C--CC---CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 1 11 135678899999984 44444443
No 136
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.24 E-value=48 Score=37.38 Aligned_cols=97 Identities=12% Similarity=0.019 Sum_probs=63.9
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEE-EEecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRI-IVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~I-ivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.++.-++|+|+|... +.++.+...+........+ +.||....+........ ..|.+.+++.++-.+.+.+.+-..
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC--q~~~f~~ls~~~i~~~L~~i~~~E 196 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC--QDFIFKKVPLSVLQDYSEKLCKIE 196 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh--heeeecCCCHHHHHHHHHHHHHHc
Confidence 456678999999764 5688887777654444444 45665555544333222 679999999999888887766433
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCChhH
Q 002780 295 SSGGCCPSELKELSQDILAKCGGLPLA 321 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~GlPLa 321 (882)
+- .--.+....|++.++|-+--
T Consensus 197 gi-----~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 197 NV-----QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred CC-----CCCHHHHHHHHHHcCChHHH
Confidence 21 11135678899999998743
No 137
>PF14516 AAA_35: AAA-like domain
Probab=62.68 E-value=1.7e+02 Score=31.56 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=43.3
Q ss_pred ceeecCCCChHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCC
Q 002780 271 HVHELETLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKN 333 (882)
Q Consensus 271 ~~~~l~~L~~~~~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~ 333 (882)
..++|++++.+|...|..++-..- .. ...++|...+||.|--+..++..+....
T Consensus 194 ~~i~L~~Ft~~ev~~L~~~~~~~~------~~---~~~~~l~~~tgGhP~Lv~~~~~~l~~~~ 247 (331)
T PF14516_consen 194 QPIELPDFTPEEVQELAQRYGLEF------SQ---EQLEQLMDWTGGHPYLVQKACYLLVEEQ 247 (331)
T ss_pred cceeCCCCCHHHHHHHHHhhhccC------CH---HHHHHHHHHHCCCHHHHHHHHHHHHHcc
Confidence 578899999999999998864332 11 2288999999999999999999997654
No 138
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=62.48 E-value=99 Score=33.13 Aligned_cols=92 Identities=9% Similarity=0.000 Sum_probs=62.8
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCch-HHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++=.+|+|++... ...+.+...+-.-.+++.+|.||.+. .+.....+-. ..+.+.++++++..+.+......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC--~~~~~~~~~~~~~~~~L~~~~~~-- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC--QTWLIHPPEEQQALDWLQAQSSA-- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc--eEEeCCCCCHHHHHHHHHHHhcc--
Confidence 45556779999764 56778888887766677777777654 4443333222 68999999999999888776411
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAI 322 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal 322 (882)
. ...+...+..++|.|+.+
T Consensus 182 -----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 -----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred -----C---hHHHHHHHHHcCCCHHHH
Confidence 1 112556788999999644
No 139
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=62.29 E-value=1.1e+02 Score=34.73 Aligned_cols=100 Identities=8% Similarity=-0.008 Sum_probs=62.6
Q ss_pred eEEEEEecCCCh---hhH-HHhHHhcCC-CCCCcEEEEecCc---------hHHHhhhccCCCcceeecCCCChHHHHHH
Q 002780 221 SYMVVFDDVWKI---DFW-GDVEHALLD-NKKCSRIIVTTRH---------MNVAKYCKSSSSVHVHELETLPPNEARKL 286 (882)
Q Consensus 221 r~LlVLDdv~~~---~~~-~~l~~~l~~-~~~gs~IivTTR~---------~~v~~~~~~~~~~~~~~l~~L~~~~~~~L 286 (882)
.-+||+||+... +.| +.+...+.. ...|..||+|+.. +.+...+... -+..+++++.++-.++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G---l~~~L~~pd~e~r~~i 283 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG---LSIAIQKLDNKTATAI 283 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC---ceeccCCcCHHHHHHH
Confidence 448899999643 223 233332321 1234568888653 2333444333 6888999999999999
Q ss_pred HHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 002780 287 FCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG 326 (882)
Q Consensus 287 f~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 326 (882)
+.+++-..+-. ..--+++..-|++.++|.|-.+.-+-
T Consensus 284 L~~~~~~~gl~---~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 284 IKKEIKNQNIK---QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHhcCCC---CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99988543210 01224678889999999887665544
No 140
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=62.16 E-value=74 Score=37.15 Aligned_cols=88 Identities=9% Similarity=0.150 Sum_probs=52.7
Q ss_pred EEEEecCCCh---hhHHH-hHHhcCC-CCCCcEEEEecCch---------HHHhhhccCCCcceeecCCCChHHHHHHHH
Q 002780 223 MVVFDDVWKI---DFWGD-VEHALLD-NKKCSRIIVTTRHM---------NVAKYCKSSSSVHVHELETLPPNEARKLFC 288 (882)
Q Consensus 223 LlVLDdv~~~---~~~~~-l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~ 288 (882)
+|||||+... +.|+. +...+.. ...|..|||||+.. .+...+... -++++++.+.+.-.+++.
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G---Lvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG---LITDVQPPELETRIAILR 456 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC---ceEEcCCCCHHHHHHHHH
Confidence 7999999754 23332 2222221 12355688888752 334444333 689999999999999999
Q ss_pred HHHcCCCCCCCCChhHHHHHHHHHHHhCCC
Q 002780 289 RKVLGPSSGGCCPSELKELSQDILAKCGGL 318 (882)
Q Consensus 289 ~~af~~~~~~~~~~~~~~~~~~i~~~c~Gl 318 (882)
+++-...- ..+ +++..-|++.+.+.
T Consensus 457 kka~~r~l--~l~---~eVi~yLa~r~~rn 481 (617)
T PRK14086 457 KKAVQEQL--NAP---PEVLEFIASRISRN 481 (617)
T ss_pred HHHHhcCC--CCC---HHHHHHHHHhccCC
Confidence 88865431 111 35555566655543
No 141
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=61.77 E-value=43 Score=40.21 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=54.1
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEE--ecCchH--HHhhhccCCCcceeecCCCChHHHHHHHHHHHc
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIV--TTRHMN--VAKYCKSSSSVHVHELETLPPNEARKLFCRKVL 292 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv--TTR~~~--v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af 292 (882)
+++.+||||||+.. .+++.+...+. .|+.++| ||.+.. +....... ..++.+++|+.++...++.+.+-
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR--~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSR--SRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcc--ccceecCCCCHHHHHHHHHHHHH
Confidence 46789999999754 45655554333 3555665 344431 22222111 16799999999999999987653
Q ss_pred CCCC--CCCCChhHHHHHHHHHHHhCCC
Q 002780 293 GPSS--GGCCPSELKELSQDILAKCGGL 318 (882)
Q Consensus 293 ~~~~--~~~~~~~~~~~~~~i~~~c~Gl 318 (882)
.... ......--.+....|++.+.|-
T Consensus 183 ~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 183 DKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred HHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 1000 0000111134556777778764
No 142
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=61.73 E-value=43 Score=35.73 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=63.3
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++=++|+|++... ..-+.+...+..-.+++.+|++|.+ ..+.....+-. ..+.+.+++.+++.+.+... +.
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC--q~i~~~~~~~~~~~~~L~~~--~~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC--QRLEFKLPPAHEALAWLLAQ--GV- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh--eEeeCCCcCHHHHHHHHHHc--CC-
Confidence 45567889998754 4566777777665667767666664 44444433322 67889999999998887653 11
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVAVG 326 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 326 (882)
+ ..-+..++..++|.|+.+..+.
T Consensus 187 -----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1236678999999998765443
No 143
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.54 E-value=74 Score=36.18 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=65.0
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEE-ecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIV-TTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++=++|+|+|... ...+.+...+..-.+.+++|. ||....+.......+ ..+++.+++.++..+.+.+.+-..+
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc--~~~~f~~l~~~el~~~L~~ia~~Eg 192 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRC--QRFDLQKIPTDKLVEHLVDIAKKEN 192 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhh--eeeecccccHHHHHHHHHHHHHHcC
Confidence 45667999999654 457778777776666666555 555555555443332 7899999999999998888775543
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLA 321 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLa 321 (882)
. . --.+....|++.++|-+-.
T Consensus 193 i--~---i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 193 I--E---HDEESLKLIAENSSGSMRN 213 (491)
T ss_pred C--C---CCHHHHHHHHHHcCCCHHH
Confidence 1 1 1134567888899887643
No 144
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.39 E-value=72 Score=38.90 Aligned_cols=100 Identities=10% Similarity=0.088 Sum_probs=67.0
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEe-cCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVT-TRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivT-TR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.+++-++|+|++... +.++.|...+-.-....++|.+ |....+...+.... ..|++++|+.++..+.+.+.+-..
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRC--q~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC--LQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhh--eEEeCCCCCHHHHHHHHHHHHHHc
Confidence 467789999999764 5778888777765555655554 44455543322222 789999999999998888765432
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 002780 295 SSGGCCPSELKELSQDILAKCGGLPLAIVA 324 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 324 (882)
+ ..--.+....|++.++|.|--+..
T Consensus 195 g-----I~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 195 Q-----LPFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred C-----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 1 111235678899999998854433
No 145
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=61.34 E-value=53 Score=37.75 Aligned_cols=100 Identities=10% Similarity=0.129 Sum_probs=65.1
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-++|+|++... +..+.+...+..-.+.+++|++|.+ ..+.......+ ..+++.+++.++....+.+.+-..+
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc--~~~~F~~Ls~~ei~~~L~~Il~~EG 193 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRT--QHFRFKQIPQNSIISHLKTILEKEG 193 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhc--eeEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45668899999754 4677777777665566776666655 33332222221 6899999999998888877664432
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVAV 325 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 325 (882)
. . --.+....|++.++|-+--+..+
T Consensus 194 i--~---i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 194 V--S---YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred C--C---CCHHHHHHHHHHcCCcHHHHHHH
Confidence 1 1 11356788999999988544443
No 146
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.64 E-value=57 Score=38.49 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=63.8
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEE-EecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRII-VTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++=++|+|++... +.++.+...+..-..++.+| +||+...+.......+ .++++.++++++....+.+.+-..+
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc--~iv~f~~ls~~ei~~~L~~ia~~eg 197 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRC--QIFDFNRIQVADIVNHLQYVASKEG 197 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhh--heeecCCCCHHHHHHHHHHHHHHcC
Confidence 34457799998754 46778888777655566655 4556565555443322 7899999999999888887664432
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLA 321 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLa 321 (882)
- . --.+....|+..++|-.--
T Consensus 198 i--~---i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 198 I--T---AEPEALNVIAQKADGGMRD 218 (614)
T ss_pred C--C---CCHHHHHHHHHHcCCCHHH
Confidence 1 1 1134677888999986543
No 147
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=59.77 E-value=5.5 Score=24.40 Aligned_cols=16 Identities=31% Similarity=0.650 Sum_probs=11.1
Q ss_pred ccCccEEEeecCCCcC
Q 002780 794 MPDIRELWIGPCPLLM 809 (882)
Q Consensus 794 ~~~L~~L~l~~c~~l~ 809 (882)
+|+|+.|+|++|+.+.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4677777777777654
No 148
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=59.24 E-value=68 Score=34.18 Aligned_cols=95 Identities=9% Similarity=0.046 Sum_probs=59.7
Q ss_pred ceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCCC
Q 002780 220 KSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSS 296 (882)
Q Consensus 220 kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~~ 296 (882)
.+-+||+|++... +..+.+...+....+.+++|+++.. ..+........ ..++++++++++....+.+.+-..+.
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~--~~~~~~~l~~~ei~~~l~~~~~~~~~ 179 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC--AVFRFSPLKKEAVAERLRYIAENEGI 179 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh--heeeeCCCCHHHHHHHHHHHHHHcCC
Confidence 3558999998654 3455666666555555677776643 22222211111 57899999999998888887754331
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhH
Q 002780 297 GGCCPSELKELSQDILAKCGGLPLA 321 (882)
Q Consensus 297 ~~~~~~~~~~~~~~i~~~c~GlPLa 321 (882)
..+ .+....+++.++|-+--
T Consensus 180 --~i~---~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 180 --EIT---DDALEAIYYVSEGDMRK 199 (319)
T ss_pred --CCC---HHHHHHHHHHcCCCHHH
Confidence 111 34677788889887654
No 149
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=59.07 E-value=76 Score=37.45 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=66.0
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEE-EEecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRI-IVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~I-ivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.+++-++|+|+|... ...+.+...+-.-....++ ++||....+......-+ ..|.+.+++.++....+.+.+-..
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC--~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC--LQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhh--eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 467778999999754 5678887777665555554 44555555543322222 789999999999998888765332
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 002780 295 SSGGCCPSELKELSQDILAKCGGLPLAIVAV 325 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 325 (882)
+. .--.+....|++.++|.|-.+..+
T Consensus 195 ~i-----~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 195 QI-----PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CC-----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 11 111355678999999977644443
No 150
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=59.05 E-value=33 Score=35.71 Aligned_cols=89 Identities=10% Similarity=0.104 Sum_probs=59.6
Q ss_pred EEEEecCCCh--hhHHHhHHhcCCCCCCcEEE-EecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCCCCCC
Q 002780 223 MVVFDDVWKI--DFWGDVEHALLDNKKCSRII-VTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSSGGC 299 (882)
Q Consensus 223 LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~~~~~ 299 (882)
.||||+++.. +.|..+.+.+.....-+|.| ||+--..+......-. .-|.-++|.+++...-+.+.|-..+-+
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC--~KfrFk~L~d~~iv~rL~~Ia~~E~v~-- 207 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC--QKFRFKKLKDEDIVDRLEKIASKEGVD-- 207 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH--HHhcCCCcchHHHHHHHHHHHHHhCCC--
Confidence 6789999865 78999999888766666654 4433332222211111 568899999999999888888554421
Q ss_pred CChhHHHHHHHHHHHhCCC
Q 002780 300 CPSELKELSQDILAKCGGL 318 (882)
Q Consensus 300 ~~~~~~~~~~~i~~~c~Gl 318 (882)
--.+.-+.|++.++|-
T Consensus 208 ---~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 208 ---IDDDALKLIAKISDGD 223 (346)
T ss_pred ---CCHHHHHHHHHHcCCc
Confidence 1235667888888874
No 151
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=58.86 E-value=55 Score=35.88 Aligned_cols=94 Identities=9% Similarity=0.041 Sum_probs=55.1
Q ss_pred ceEEEEEecCCCh-------------h---hHHHhHHhcCC--CCCCcEEEEecCchHHHhhh--ccCCCcceeecCCCC
Q 002780 220 KSYMVVFDDVWKI-------------D---FWGDVEHALLD--NKKCSRIIVTTRHMNVAKYC--KSSSSVHVHELETLP 279 (882)
Q Consensus 220 kr~LlVLDdv~~~-------------~---~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~--~~~~~~~~~~l~~L~ 279 (882)
...+|+|||++.. . .+..+...+.. ...+.+||.||......... ....-...++++..+
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcC
Confidence 5679999999753 1 12222222222 13467788888864332211 111112578999999
Q ss_pred hHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCCh
Q 002780 280 PNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLP 319 (882)
Q Consensus 280 ~~~~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlP 319 (882)
.++..++|..++.+.... ...+ -..+++.+.|..
T Consensus 295 ~~~r~~Il~~~~~~~~l~--~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 295 FEGRLEILKIHTRKMKLA--EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHHHhcCCCC--ccCC----HHHHHHHcCCCC
Confidence 999999999988665311 1112 356667777764
No 152
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=58.83 E-value=78 Score=37.77 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=64.6
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcE-EEEecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSR-IIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~-IivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-++|+|++... ..++.+...+..-..... |++||+...+.......+ ..+++.+++.++....+...+-..+
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRc--q~ieF~~L~~eeI~~~L~~il~keg 194 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRV--QRFNFRRISEDEIVSRLEFILEKEN 194 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhc--eeEEccCCCHHHHHHHHHHHHHHcC
Confidence 56668899999754 567778777665444544 455666555554333222 6899999999998888877654322
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChh-HHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPL-AIVAVG 326 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g 326 (882)
- . --.+.+..|++.++|-+- |+..+.
T Consensus 195 I--~---id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 195 I--S---YEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred C--C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 1 113457789999988664 444433
No 153
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.62 E-value=56 Score=38.33 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=64.6
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEE-EecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRII-VTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
++.-++|+|+|... ..++.+...+..-....++| +||....+.......+ ..+++++++.++..+.+.+.+-..+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc--~~~~f~~Ls~eei~~~L~~i~~~eg 200 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRC--LQFNLRPMAPETVLEHLTQVLAAEN 200 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhc--eeeecCCCCHHHHHHHHHHHHHHcC
Confidence 45558899999865 56778887777655555555 4555444443332222 7899999999999888887764432
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVA 324 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 324 (882)
. . --.+....|++.++|-+--+..
T Consensus 201 i--~---ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 201 V--P---AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred C--C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1 1 1135677888899987654443
No 154
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=57.14 E-value=64 Score=34.46 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=63.5
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
.+++=++|+|++... ...+.+...+..-.++.-|++|+.-..+.....+-+ ..+.+.++++++..+.+.+......
T Consensus 122 ~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRc--q~i~f~~l~~~~~~~~L~~~~~~~~ 199 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRC--QIIPFYRLSDEQLEQVLKRLGDEEI 199 (314)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhc--eEEecCCCCHHHHHHHHHHhhcccc
Confidence 355668889988654 467777777765444444455555555555444333 7899999999999999988642211
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVA 324 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 324 (882)
....-..++..++|-|..+..
T Consensus 200 --------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 200 --------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred --------chhHHHHHHHHcCCCHHHHHH
Confidence 011135789999999976554
No 155
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=56.33 E-value=1.4e+02 Score=33.26 Aligned_cols=116 Identities=13% Similarity=0.088 Sum_probs=63.2
Q ss_pred EEEEecCCChh---hH-HHhHHhcCC-CCCCcEEEEecCc-hH--------HHhhhccCCCcceeecCCCChHHHHHHHH
Q 002780 223 MVVFDDVWKID---FW-GDVEHALLD-NKKCSRIIVTTRH-MN--------VAKYCKSSSSVHVHELETLPPNEARKLFC 288 (882)
Q Consensus 223 LlVLDdv~~~~---~~-~~l~~~l~~-~~~gs~IivTTR~-~~--------v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~ 288 (882)
+|||||+.... .+ +.+...+.. ...|..|||||.. .. +...+.. ..++.+++.+.++-..++.
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~---g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEW---GLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccC---CeEEEeCCCCHHHHHHHHH
Confidence 78999997531 22 223222221 1134567887754 21 2222222 1578999999999999999
Q ss_pred HHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHH----HHHH--HhcCCCCChHHHHHHHHHh
Q 002780 289 RKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIV----AVGG--LLSSKNRVVSEWKKLFDRL 346 (882)
Q Consensus 289 ~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~----~~g~--~L~~~~~~~~~w~~~l~~~ 346 (882)
+++-...- ..+ +++..-|++.+.|-+-.+. .+.. .+..+.-+....+.++...
T Consensus 279 ~~~~~~~~--~l~---~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 279 KKAEEEGL--ELP---DEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHcCC--CCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 88865421 112 4667777888877554322 2221 1222233455666666543
No 156
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.21 E-value=46 Score=37.79 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=65.5
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEE-EecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRII-VTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.+++-++|+|++... ++.+.+...+........+| +||....+........ ..+++.+++.++....+.+.+...
T Consensus 115 ~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~--~vv~f~~l~~~el~~~L~~i~~~e 192 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRC--QVIEFRNISDELIIKRLQEVAEAE 192 (472)
T ss_pred cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCc--EEEEECCccHHHHHHHHHHHHHHc
Confidence 356679999999754 45666666665544344444 3454344544443332 689999999999888888877543
Q ss_pred CCCCCCChhHHHHHHHHHHHhC-CChhHHHHHHHHh
Q 002780 295 SSGGCCPSELKELSQDILAKCG-GLPLAIVAVGGLL 329 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~-GlPLal~~~g~~L 329 (882)
+- ..+ .+....|++.++ +++.|+..+-.+.
T Consensus 193 gi--~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 193 GI--EID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CC--CCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 21 111 345677888775 5577777776543
No 157
>PRK04195 replication factor C large subunit; Provisional
Probab=54.46 E-value=3e+02 Score=31.53 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=58.8
Q ss_pred ceEEEEEecCCChh------hHHHhHHhcCCCCCCcEEEEecCch-HHHh-hhccCCCcceeecCCCChHHHHHHHHHHH
Q 002780 220 KSYMVVFDDVWKID------FWGDVEHALLDNKKCSRIIVTTRHM-NVAK-YCKSSSSVHVHELETLPPNEARKLFCRKV 291 (882)
Q Consensus 220 kr~LlVLDdv~~~~------~~~~l~~~l~~~~~gs~IivTTR~~-~v~~-~~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 291 (882)
++-+||+|+++... .+..+...+.. .+..||+|+.+. .+.. ..... ...+++.+++.++....+.+.+
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr--~~~I~f~~~~~~~i~~~L~~i~ 173 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNA--CLMIEFKRLSTRSIVPVLKRIC 173 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhcc--ceEEEecCCCHHHHHHHHHHHH
Confidence 67799999997642 25555555542 233466666432 1111 11111 1678999999999988888776
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 002780 292 LGPSSGGCCPSELKELSQDILAKCGGLPLAIVA 324 (882)
Q Consensus 292 f~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 324 (882)
...+- ..+ .+....|++.++|-.-++..
T Consensus 174 ~~egi--~i~---~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 174 RKEGI--ECD---DEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred HHcCC--CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 54331 222 35678889999986655543
No 158
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.43 E-value=56 Score=35.82 Aligned_cols=102 Identities=11% Similarity=0.135 Sum_probs=62.0
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEec-CchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTT-RHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-+||+|++... ..++.+...+......+.+|++| ....+........ .+++..++++++....+...+...+
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~--~~v~~~~~~~~~l~~~l~~~~~~~g 184 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC--QIFDFKRITIKDIKEHLAGIAVKEG 184 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcc--eeEecCCccHHHHHHHHHHHHHHcC
Confidence 34557999998654 34677766665444445555444 4444433322222 5789999999999988888775543
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChh-HHHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPL-AIVAVGG 327 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g~ 327 (882)
- ..+ .+....++..++|-+- |+..+..
T Consensus 185 ~--~i~---~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 185 I--KFE---DDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred C--CCC---HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1 111 3567778888888544 4444433
No 159
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=54.37 E-value=14 Score=37.09 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCh---hhHHHhHHhcCCCCCCcEEEEecCchHHHhhhc
Q 002780 220 KSYMVVFDDVWKI---DFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCK 265 (882)
Q Consensus 220 kr~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~ 265 (882)
.-=++|||||... .....+...+....+.+.+||||-++.++..+.
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-S
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4558899999865 345556666665566789999999999988764
No 160
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=53.97 E-value=1.1e+02 Score=34.59 Aligned_cols=101 Identities=11% Similarity=0.080 Sum_probs=63.0
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEec-CchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTT-RHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-++|+|++... +..+.+...+.....+..+|++| +...+........ ..+++.++++++....+.+.+-..+
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc--~~v~f~~l~~~el~~~L~~~~~~eg 197 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRC--QKMHLKRIPEETIIDKLALIAKQEG 197 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhc--eEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 55667899998644 45666777766655566666555 4444433332222 6889999999998888777654322
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCh-hHHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLP-LAIVAVG 326 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlP-Lal~~~g 326 (882)
. . --.+.+..|++.++|-+ .|+..+-
T Consensus 198 ~--~---i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 198 I--E---TSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred C--C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 1 11356788899999855 4444443
No 161
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.37 E-value=85 Score=36.90 Aligned_cols=100 Identities=9% Similarity=0.045 Sum_probs=65.5
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEec-CchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTT-RHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-++|+|++... +..+.+...+......+.+|++| ....+........ ..+++..++.++....+.+.+...+
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~--~~i~f~~l~~~el~~~L~~~a~~eg 196 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRC--QRFDFHRHSVADMAAHLRKIAAAEG 196 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhcc--ceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 45668999998644 45777777766655566666555 4444444333222 6788999999998888888765432
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVAV 325 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 325 (882)
. ... .+....|++.++|-+..+...
T Consensus 197 l--~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 197 I--NLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred C--CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 111 356788999999988654443
No 162
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=53.02 E-value=64 Score=39.41 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=66.0
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEE-EecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRII-VTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.+++=++|||++... ..++.|...+..-...+.+| +||....+...+...+ .+|++..++.++..+.+.+.+-..
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc--~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRT--HHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhe--eEEEeeCCCHHHHHHHHHHHHHHc
Confidence 345557889999765 56778888877665565555 5555555655444332 789999999999888877654322
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCChh-HHHHHHHH
Q 002780 295 SSGGCCPSELKELSQDILAKCGGLPL-AIVAVGGL 328 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g~~ 328 (882)
+. . --.+....|++.++|-+. ++..+-.+
T Consensus 196 Gv--~---id~eal~lLa~~sgGdlR~Al~eLEKL 225 (824)
T PRK07764 196 GV--P---VEPGVLPLVIRAGGGSVRDSLSVLDQL 225 (824)
T ss_pred CC--C---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 1 113455778999999774 33333333
No 163
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=53.00 E-value=11 Score=23.26 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=7.5
Q ss_pred CCCcEEEccCcccc
Q 002780 570 LSLETLNMKNTLVR 583 (882)
Q Consensus 570 ~~L~~L~L~~~~l~ 583 (882)
.+|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555443
No 164
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=52.66 E-value=49 Score=33.35 Aligned_cols=101 Identities=14% Similarity=0.028 Sum_probs=56.2
Q ss_pred eEEEEEecCCChhh--HHHhHHhcCCC-CCCc-EEEEecCchHHHh--------hhccCCCcceeecCCCChHHHHHHHH
Q 002780 221 SYMVVFDDVWKIDF--WGDVEHALLDN-KKCS-RIIVTTRHMNVAK--------YCKSSSSVHVHELETLPPNEARKLFC 288 (882)
Q Consensus 221 r~LlVLDdv~~~~~--~~~l~~~l~~~-~~gs-~IivTTR~~~v~~--------~~~~~~~~~~~~l~~L~~~~~~~Lf~ 288 (882)
.-+||+||+..... -+.+...+... ..|. .||+|++...... .+... ..++++++++++-..++.
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~---~~i~l~pl~~~~~~~~l~ 167 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWG---LVYELKPLSDADKIAALK 167 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcC---eEEEecCCCHHHHHHHHH
Confidence 34788999965432 22333333221 2344 3666666432211 22111 688999999987666666
Q ss_pred HHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHh
Q 002780 289 RKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLL 329 (882)
Q Consensus 289 ~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L 329 (882)
+.+-... ..--++....+++.+.|.+..+..+-..|
T Consensus 168 ~~~~~~~-----v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 168 AAAAERG-----LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHcC-----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5432221 11123567777778888888776665544
No 165
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=52.54 E-value=1.3e+02 Score=34.10 Aligned_cols=117 Identities=12% Similarity=0.076 Sum_probs=65.4
Q ss_pred EEEEEecCCCh---hhH-HHhHHhcCC-CCCCcEEEEecCch---------HHHhhhccCCCcceeecCCCChHHHHHHH
Q 002780 222 YMVVFDDVWKI---DFW-GDVEHALLD-NKKCSRIIVTTRHM---------NVAKYCKSSSSVHVHELETLPPNEARKLF 287 (882)
Q Consensus 222 ~LlVLDdv~~~---~~~-~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf 287 (882)
-+||||||... +.+ +.+...+.. ...|..||+||... .+...+... .++++++.+.++-..++
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g---l~v~i~~pd~~~r~~il 289 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWG---LTVDIEPPDLETRIAIL 289 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCC---eeEEecCCCHHHHHHHH
Confidence 38999999643 112 223222211 11244588877642 123333322 58999999999999999
Q ss_pred HHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHH----HHHHHH--hcCCCCChHHHHHHHHHh
Q 002780 288 CRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAI----VAVGGL--LSSKNRVVSEWKKLFDRL 346 (882)
Q Consensus 288 ~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal----~~~g~~--L~~~~~~~~~w~~~l~~~ 346 (882)
.+++-... ...+ .++..-|++.+.|-.-.+ ..+..+ +.++.-+....+.++..+
T Consensus 290 ~~~~~~~~--~~l~---~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 290 KKKAEEEG--IDLP---DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHcC--CCCC---HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 99886432 1122 356777888887765432 222221 223333456666666654
No 166
>PRK04132 replication factor C small subunit; Provisional
Probab=51.45 E-value=1.5e+02 Score=36.34 Aligned_cols=111 Identities=11% Similarity=0.053 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhC-----C-ceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecC
Q 002780 206 EMELITALRDHLK-----D-KSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELE 276 (882)
Q Consensus 206 ~~~~~~~l~~~L~-----~-kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~ 276 (882)
.+.+.+.+++... + +.-++|+|++... ++.+.+...+.......++|.+|-+ ..+......-+ ..+.+.
T Consensus 610 id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC--~~i~F~ 687 (846)
T PRK04132 610 INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC--AIFRFR 687 (846)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhc--eEEeCC
Confidence 4455555554332 2 4579999999875 4677787777654455566555444 44443333222 789999
Q ss_pred CCChHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHH
Q 002780 277 TLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIV 323 (882)
Q Consensus 277 ~L~~~~~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 323 (882)
++++++-...+.+.+-..+- ..+ .+....|++.|+|-+-.+.
T Consensus 688 ~ls~~~i~~~L~~I~~~Egi--~i~---~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 688 PLRDEDIAKRLRYIAENEGL--ELT---EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CCCHHHHHHHHHHHHHhcCC--CCC---HHHHHHHHHHcCCCHHHHH
Confidence 99999988887776543221 111 3567899999999875443
No 167
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=51.19 E-value=81 Score=34.06 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=61.8
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++=.+|+|++... ..++.+...+-.-.+++.+|.+|.+ ..+.....+-. ..+.+.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRc--q~i~~~~~~~~~~~~~L~~~--~~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRC--RQFPMTVPAPEAAAAWLAAQ--GV- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcC--EEEEecCCCHHHHHHHHHHc--CC-
Confidence 44447778998764 5788888888776667766555554 55554433322 68999999999999888764 11
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVAVG 326 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 326 (882)
++ ...++..++|.|+.+..+.
T Consensus 206 -----~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 -----AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -----Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1235778999997655443
No 168
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=50.67 E-value=1.3e+02 Score=32.41 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=62.9
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++=.+|+|++... ...+.+...+-.-.+++.+|.+|.+ ..+.....+-. ..+.+.+++++++.+.+.... +.
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC--q~~~~~~~~~~~~~~~L~~~~-~~- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC--RLHYLAPPPEQYALTWLSREV-TM- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc--ccccCCCCCHHHHHHHHHHcc-CC-
Confidence 45567888988754 5677888888776667777666665 44554433322 678999999999988776532 11
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIV 323 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~ 323 (882)
+ .+.+..++..++|.|..+.
T Consensus 183 -----~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 183 -----S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred -----C---HHHHHHHHHHcCCCHHHHH
Confidence 1 2336788999999997544
No 169
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.30 E-value=80 Score=36.54 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=60.6
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEec-CchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTT-RHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.+++-++|+|++... ...+.+...+..-...+.+|.+| ....+.......+ ..+++++++.++..+.+.+.+-..
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc--~~~~f~~l~~~~i~~~L~~il~~e 194 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC--LQFNLKQMPPPLIVSHLQHILEQE 194 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHH--HHHhcCCCCHHHHHHHHHHHHHHc
Confidence 356678999999765 45777777777655556665554 4333332211111 688999999999888777665332
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCChh
Q 002780 295 SSGGCCPSELKELSQDILAKCGGLPL 320 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~GlPL 320 (882)
+. .--.+....|++.++|.+-
T Consensus 195 gi-----~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 195 NI-----PFDATALQLLARAAAGSMR 215 (527)
T ss_pred CC-----CCCHHHHHHHHHHcCCCHH
Confidence 11 1113456778889999764
No 170
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.40 E-value=2.4e+02 Score=29.21 Aligned_cols=140 Identities=13% Similarity=0.153 Sum_probs=78.9
Q ss_pred EEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCC
Q 002780 224 VVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSSGGCC 300 (882)
Q Consensus 224 lVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~~~~~~ 300 (882)
+|+-.+++- ++-..+++......+.+|+|+.--+ ..+........ -.+++...+++|-...+++.+-..+ ...
T Consensus 131 vvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRC--l~iRvpaps~eeI~~vl~~v~~kE~--l~l 206 (351)
T KOG2035|consen 131 VVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRC--LFIRVPAPSDEEITSVLSKVLKKEG--LQL 206 (351)
T ss_pred EEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhhe--eEEeCCCCCHHHHHHHHHHHHHHhc--ccC
Confidence 444444332 4455666666655566777764222 11111111111 5688999999999999988775543 122
Q ss_pred ChhHHHHHHHHHHHhCCC-hhHHHHHHHHhc-C-------CCCChHHHHHHHHHhccccCCCCChhhHHHHHHhccCCC
Q 002780 301 PSELKELSQDILAKCGGL-PLAIVAVGGLLS-S-------KNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYYAL 370 (882)
Q Consensus 301 ~~~~~~~~~~i~~~c~Gl-PLal~~~g~~L~-~-------~~~~~~~w~~~l~~~~~~~~~~~~~~~i~~~l~~sy~~L 370 (882)
| ++++.+|+++++|. --|+-++-..-. + .....-+|+-++.+.....-.+.....+..+-..=|+-|
T Consensus 207 p---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 207 P---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred c---HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 2 78999999999885 344443322211 1 111356899998887665444333344555544445443
No 171
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=47.36 E-value=41 Score=31.72 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=30.9
Q ss_pred HHHHHhCC-ceEEEEEecCCCh-----hhHHHhHHhcCCCCCCcEEEEecCch
Q 002780 212 ALRDHLKD-KSYMVVFDDVWKI-----DFWGDVEHALLDNKKCSRIIVTTRHM 258 (882)
Q Consensus 212 ~l~~~L~~-kr~LlVLDdv~~~-----~~~~~l~~~l~~~~~gs~IivTTR~~ 258 (882)
..++.+.. +-=|||||++-.. -..+.+...+..-..+.-||+|.|+.
T Consensus 86 ~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 86 FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 34444444 4459999999654 23455555555555667899999984
No 172
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=46.17 E-value=1.3e+02 Score=35.25 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=64.2
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEE-ecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIV-TTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
++| ++|+|++... ..++.+...+........+|. ||....+.......+ ..+++.++++++....+...+-..+
T Consensus 119 ~~K-VIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRc--q~ieF~~Ls~~eL~~~L~~il~keg 195 (605)
T PRK05896 119 KYK-VYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRC--QRYNFKKLNNSELQELLKSIAKKEK 195 (605)
T ss_pred CcE-EEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhh--hhcccCCCCHHHHHHHHHHHHHHcC
Confidence 345 5999999753 567777777765544555554 555445543322222 6889999999999888887664432
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCh-hHHHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLP-LAIVAVGG 327 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlP-Lal~~~g~ 327 (882)
. ..+ .+.+..+++.++|-+ .|+..+-.
T Consensus 196 i--~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 196 I--KIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred C--CCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1 111 345778899999955 45555554
No 173
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=45.68 E-value=96 Score=36.42 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=65.0
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEE-EecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRII-VTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++=++|+|++... ...+.+...+..-.+.+++| +||....+...+...+ ..+++..++.++....+.+.+-..+
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRc--q~~~f~~l~~~el~~~L~~i~~keg 208 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRC--QRFDLRRIEADVLAAHLSRIAAKEG 208 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhhe--eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 44556899999654 45777777776655566655 4555555544333222 6899999999999988888764432
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVA 324 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 324 (882)
. .. -.+....|++.++|-+.-+..
T Consensus 209 i--~i---~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 209 V--EV---EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred C--CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 1 11 125678889999998765543
No 174
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.27 E-value=91 Score=34.62 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhCCc--eEEEEEecCCChh--hHHHhHHhcCCC-CCCcEEEEe---------cCchHHHhh-hccCCCcc
Q 002780 207 MELITALRDHLKDK--SYMVVFDDVWKID--FWGDVEHALLDN-KKCSRIIVT---------TRHMNVAKY-CKSSSSVH 271 (882)
Q Consensus 207 ~~~~~~l~~~L~~k--r~LlVLDdv~~~~--~~~~l~~~l~~~-~~gs~IivT---------TR~~~v~~~-~~~~~~~~ 271 (882)
.+....+.+...+. -+++|||.++.-. .-..+...|.|- -++||+|.. -|.---... .+ ....
T Consensus 241 ~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~--~~P~ 318 (529)
T KOG2227|consen 241 MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLT--IKPK 318 (529)
T ss_pred HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccC--CCCc
Confidence 34455555555553 5899999886432 111122223222 256666553 222111111 11 1226
Q ss_pred eeecCCCChHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHh
Q 002780 272 VHELETLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLL 329 (882)
Q Consensus 272 ~~~l~~L~~~~~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L 329 (882)
...-+|-+.++-.++|..+.-........+..++-.|++++.--|-+=-|+.+.-+.+
T Consensus 319 ~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 319 LLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred eeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 7788999999999999988754322112223444444544444455666666665555
No 175
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=42.52 E-value=1.3e+02 Score=32.23 Aligned_cols=91 Identities=12% Similarity=0.079 Sum_probs=62.6
Q ss_pred ceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCCC
Q 002780 220 KSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSS 296 (882)
Q Consensus 220 kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~~ 296 (882)
++=.+|+|++... ...+.+...+..-.+++.+|.+|.+ ..+.....+-. ..+.+.+++++++.+.+... + .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC--q~~~~~~~~~~~~~~~L~~~--~-~- 181 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC--QQWVVTPPSTAQAMQWLKGQ--G-I- 181 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc--eeEeCCCCCHHHHHHHHHHc--C-C-
Confidence 3446778888754 5678888888776667766666555 44554444332 78999999999998888653 1 0
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 002780 297 GGCCPSELKELSQDILAKCGGLPLAIVAV 325 (882)
Q Consensus 297 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 325 (882)
. ....++..++|.|+.+..+
T Consensus 182 ----~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 ----T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ----c-----hHHHHHHHcCCCHHHHHHH
Confidence 1 1356789999999977655
No 176
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=42.39 E-value=1.4e+02 Score=28.25 Aligned_cols=97 Identities=11% Similarity=0.066 Sum_probs=50.9
Q ss_pred CceEEEEEecC------CChhhHHHhHHhcCCCCCCcEEEEecC-ch----HHHhhhccCCCcceeecCCCChHHHHHHH
Q 002780 219 DKSYMVVFDDV------WKIDFWGDVEHALLDNKKCSRIIVTTR-HM----NVAKYCKSSSSVHVHELETLPPNEARKLF 287 (882)
Q Consensus 219 ~kr~LlVLDdv------~~~~~~~~l~~~l~~~~~gs~IivTTR-~~----~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf 287 (882)
+.+=+||+.+. +....++.+...+....+++.+|+.+. .. ...+..... ..+++..+++..+.....
T Consensus 56 ~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~--~~~~~~~~~~~~~~~~~i 133 (172)
T PF06144_consen 56 GDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQ--AIVIECKKPKEQELPRWI 133 (172)
T ss_dssp SSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTT--EEEEEE----TTTHHHHH
T ss_pred CCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcc--cceEEecCCCHHHHHHHH
Confidence 33445555554 445788999998888778888888877 22 223333322 256777777777777777
Q ss_pred HHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHH
Q 002780 288 CRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAI 322 (882)
Q Consensus 288 ~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal 322 (882)
...+-..+- .--.+....++.+.+|-+.++
T Consensus 134 ~~~~~~~g~-----~i~~~a~~~L~~~~~~d~~~l 163 (172)
T PF06144_consen 134 KERAKKNGL-----KIDPDAAQYLIERVGNDLSLL 163 (172)
T ss_dssp HHHHHHTT------EE-HHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHcCC-----CCCHHHHHHHHHHhChHHHHH
Confidence 766654321 112345566666666655443
No 177
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.05 E-value=1.2e+02 Score=34.87 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=60.9
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEE-ecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIV-TTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.++.-++|+|+|... +..+.+...+..-.+.+++|. ||....+........ ..+++++++.++-...+.+.+-..
T Consensus 117 ~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc--~~~~f~~l~~~~i~~~l~~il~~e 194 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRC--LQFHLAQLPPLQIAAHCQHLLKEE 194 (509)
T ss_pred cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHh--hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 356668899999764 567777777776555666655 444444443322211 678899999988777665554332
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCChhHHH
Q 002780 295 SSGGCCPSELKELSQDILAKCGGLPLAIV 323 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 323 (882)
+. .. -.+....|++.++|-|--+.
T Consensus 195 gi--~~---~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 195 NV--EF---ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred CC--CC---CHHHHHHHHHHcCCcHHHHH
Confidence 21 11 12445678888888775443
No 178
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.79 E-value=1.6e+02 Score=33.74 Aligned_cols=100 Identities=10% Similarity=0.031 Sum_probs=61.9
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEE-ecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIV-TTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.+++-++|+|++... +..+.+...+....+...+|+ ||+...+........ ..+++.+++.++-...+.+.+-..
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc--~~i~f~~ls~~el~~~L~~i~k~e 194 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRC--QRFIFSKPTKEQIKEYLKRICNEE 194 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhc--eEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356679999998754 456777776665544555544 555444443322222 678999999999888887766433
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 002780 295 SSGGCCPSELKELSQDILAKCGGLPLAIVA 324 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 324 (882)
+- . --.+....|+..++|-+-.+..
T Consensus 195 gi--~---id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 195 KI--E---YEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred CC--C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 21 1 1134566788888886654433
No 179
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=40.59 E-value=1.7e+02 Score=30.80 Aligned_cols=72 Identities=7% Similarity=0.083 Sum_probs=43.4
Q ss_pred EEEEEecCCCh-----------hhHHHhHHhcCCCCCCcEEEEecCchHHHhhhccC-----CCcceeecCCCChHHHHH
Q 002780 222 YMVVFDDVWKI-----------DFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSS-----SSVHVHELETLPPNEARK 285 (882)
Q Consensus 222 ~LlVLDdv~~~-----------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~-----~~~~~~~l~~L~~~~~~~ 285 (882)
-+|+||++... +.++.+...+.....+-+||++|-....-...... .-...+++++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58889998621 23455555555555566777776543222111110 001568899999999999
Q ss_pred HHHHHHcC
Q 002780 286 LFCRKVLG 293 (882)
Q Consensus 286 Lf~~~af~ 293 (882)
++...+-.
T Consensus 203 I~~~~l~~ 210 (284)
T TIGR02880 203 IAGLMLKE 210 (284)
T ss_pred HHHHHHHH
Confidence 98887643
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=40.49 E-value=2.6e+02 Score=30.02 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=47.3
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCc-hHHHhhhccCCCcceeecCCCChHHHHHHHHH
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEARKLFCR 289 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 289 (882)
+.+=.+|+|++... +..+.+...+..-.+++.+|.+|.+ ..+........ .++++.++++++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc--~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRC--QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhc--eeeeCCCCCHHHHHHHHHH
Confidence 34445888988654 4567788877776667777777765 33443333322 7899999999999887765
No 181
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.92 E-value=1.7e+02 Score=34.19 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=67.1
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEE-EecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRII-VTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++=++|+|++... ...+.|...+..-.....+| +||....+.......+ ..+++.+++.++..+.+.+.+-..+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc--~~~~F~~l~~~~i~~~L~~i~~~eg 194 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT--HHYPFRLLPPRTMRALIARICEQEG 194 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhc--eEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 45558899999754 56778877777655555544 5555565554433322 7899999999998888877664432
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCh-hHHHHHHHHh
Q 002780 296 SGGCCPSELKELSQDILAKCGGLP-LAIVAVGGLL 329 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlP-Lal~~~g~~L 329 (882)
. .. -.+....|++.++|-+ -|+..+-.++
T Consensus 195 i--~i---~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 195 V--VV---DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred C--CC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 11 1345677888999876 4555554444
No 182
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.75 E-value=11 Score=42.23 Aligned_cols=12 Identities=25% Similarity=0.232 Sum_probs=6.4
Q ss_pred CCCccEEEEeec
Q 002780 722 LKNLIRLGLDLS 733 (882)
Q Consensus 722 l~~L~~L~L~~~ 733 (882)
.|+|..|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 355555555555
No 183
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=37.96 E-value=2e+02 Score=30.36 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=59.2
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEec-CchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTT-RHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++=++|+||+... ...+.+...+..-.+++.+|.+| ....+.......+ .++++.++++++..+.+... +.
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc--~~~~f~~l~~~~l~~~l~~~--~~- 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRC--QVFNVKEPDQQKILAKLLSK--NK- 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCe--EEEECCCCCHHHHHHHHHHc--CC-
Confidence 45667788888654 45777888887766777777655 4455554433322 78999999999988777654 11
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVA 324 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 324 (882)
+ .+.++.++...+|.=-|+..
T Consensus 164 -----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 164 -----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred -----C---hhHHHHHHHHcCCHHHHHHH
Confidence 1 13456666667763344444
No 184
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.41 E-value=1.8e+02 Score=34.45 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=63.3
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEE-EecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRII-VTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++-++|+|++... +.++.+...+..-.....+| +|+....+........ ..+++..++.++....+.+.+-..+
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc--~~~~f~~l~~~ei~~~L~~ia~keg 197 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRC--QRFDFRRIPLEAMVQHLSEIAEKES 197 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhhe--eEEEecCCCHHHHHHHHHHHHHHhC
Confidence 45557899999754 56778877777644455544 4554444443332222 6788889999888887777664432
Q ss_pred CCCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLPLAIVAV 325 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 325 (882)
. ... .+....|++.++|-+..+..+
T Consensus 198 i--~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 198 I--EIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred C--CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 111 245788999999987655443
No 185
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=37.26 E-value=44 Score=31.68 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=37.3
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCchH-HHhhhccCCCcceeecCCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRHMN-VAKYCKSSSSVHVHELETLP 279 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~~~~~~~~~l~~L~ 279 (882)
+++=.+|+||+... +.++.+...+-.-..++++|++|++.+ +......-. ..+.+.+|+
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc--~~i~~~~ls 162 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRC--QVIRFRPLS 162 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTS--EEEEE----
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhc--eEEecCCCC
Confidence 34557889999864 678888888888778899988888754 443333322 566666653
No 186
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=36.91 E-value=2.1e+02 Score=33.45 Aligned_cols=99 Identities=12% Similarity=0.074 Sum_probs=63.4
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEe-cCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVT-TRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivT-TR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.+++=++|+|++... ..++.+...+..-.+...+|.+ |....+........ ..++..+++.++-.+.+.+.+...
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc--~~~~f~~l~~~el~~~L~~i~~~e 194 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRC--QHFNFRLLSLEKIYNMLKKVCLED 194 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhc--eEEEecCCCHHHHHHHHHHHHHHc
Confidence 355667889998754 4677787777765555655554 44444443333222 678999999999888888776543
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCChhHHH
Q 002780 295 SSGGCCPSELKELSQDILAKCGGLPLAIV 323 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 323 (882)
+- . --.+....|++.++|-+-.+.
T Consensus 195 gi--~---id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 195 QI--K---YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred CC--C---CCHHHHHHHHHHcCCCHHHHH
Confidence 21 1 113566778888998775443
No 187
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=35.48 E-value=25 Score=22.03 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=6.4
Q ss_pred eeeEEEecCCCC
Q 002780 525 LIKVLDLEDAPV 536 (882)
Q Consensus 525 ~Lr~L~L~~~~i 536 (882)
.|++|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555554
No 188
>CHL00181 cbbX CbbX; Provisional
Probab=35.40 E-value=2.4e+02 Score=29.60 Aligned_cols=72 Identities=8% Similarity=0.113 Sum_probs=43.1
Q ss_pred EEEEEecCCCh-----------hhHHHhHHhcCCCCCCcEEEEecCchHHHhhhccC-----CCcceeecCCCChHHHHH
Q 002780 222 YMVVFDDVWKI-----------DFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSS-----SSVHVHELETLPPNEARK 285 (882)
Q Consensus 222 ~LlVLDdv~~~-----------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~-----~~~~~~~l~~L~~~~~~~ 285 (882)
-+|++|++... +..+.+...+.....+.+||.++....+....... .-...+..++++.+|-.+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48899998642 23344445555555556777777644432211100 001578899999999888
Q ss_pred HHHHHHcC
Q 002780 286 LFCRKVLG 293 (882)
Q Consensus 286 Lf~~~af~ 293 (882)
++...+-.
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 88877644
No 189
>TIGR02501 type_III_yscE type III secretion system protein, YseE family. Members of this family are found exclusively in type III secretion appparatus gene clusters in bacteria. Those bacteria with a protein from this family tend to target animal cells, as does Yersinia pestis. This protein is small (about 70 amino acids) and not well characterized.
Probab=34.81 E-value=2.3e+02 Score=22.33 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCchhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 002780 27 VRKEVQSIKTEMESLRSFLKDADARAAVEELEGGGEESVRTWVKQLRDEAYRIEDVIDEYTLM 89 (882)
Q Consensus 27 v~~~~~~L~~~L~~i~a~l~~ae~~~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD~lD~~~~~ 89 (882)
.+..++.++..|..-++.+..+=....+. ...+.| .++.++..-|++||+....+
T Consensus 11 ~~~~~~~~~~~L~~a~~~lk~qL~~~~tp-------~qYq~l-~~~~~A~~aA~~II~~l~~r 65 (67)
T TIGR02501 11 ADTAARAIIEQLEAALAELKEQLSRGGDP-------QQYQEW-QLLADAIEAAIKIIEILTGR 65 (67)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCCCCH-------HHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33446777777777777776655554443 555666 66778889999999987653
No 190
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=34.56 E-value=4.6e+02 Score=27.74 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=39.0
Q ss_pred ceEEEEEecCCCh---hhHHHhHHhcCCCCCCcEEEEecCchH-HHhhhccCCCcceeecCCCChHHHHHHHHH
Q 002780 220 KSYMVVFDDVWKI---DFWGDVEHALLDNKKCSRIIVTTRHMN-VAKYCKSSSSVHVHELETLPPNEARKLFCR 289 (882)
Q Consensus 220 kr~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 289 (882)
.+-+||+||+... +..+.+...+.....++++|+||.... +........ ..+.++..+.++..+++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~--~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC--RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc--eEEEeCCCCHHHHHHHHHH
Confidence 4457889999754 233344444555556778888886532 222221111 4566777777777666543
No 191
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=34.00 E-value=5.3e+02 Score=26.35 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=27.9
Q ss_pred CCceEEEEEecCCC---hhhHHHhHHhcCCC----CCCcEEEEecCchHHHh
Q 002780 218 KDKSYMVVFDDVWK---IDFWGDVEHALLDN----KKCSRIIVTTRHMNVAK 262 (882)
Q Consensus 218 ~~kr~LlVLDdv~~---~~~~~~l~~~l~~~----~~gs~IivTTR~~~v~~ 262 (882)
+..||+|.+||..= +.....++..+..+ ...-.|.+||-..++..
T Consensus 104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 34799999999963 24566777666532 22345556665555554
No 192
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.89 E-value=1.2e+02 Score=35.64 Aligned_cols=102 Identities=11% Similarity=0.082 Sum_probs=63.0
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEE-EecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCCC
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRII-VTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPS 295 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 295 (882)
+++=++|+|+|... ...+.+...+..-.....+| +||....+.......+ ..+++.+++.++....+...+-..+
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc--~~~~f~~l~~~~i~~~L~~i~~~eg 195 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRC--QRFDFRRIPLQKIVDRLRYIADQEG 195 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhh--hhhhcCCCCHHHHHHHHHHHHHHhC
Confidence 44557889998654 45777777776555555554 5666566654433222 6788999999888877766553322
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCh-hHHHHHHH
Q 002780 296 SGGCCPSELKELSQDILAKCGGLP-LAIVAVGG 327 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~i~~~c~GlP-Lal~~~g~ 327 (882)
. .. -.+....|++.++|-. .|+..+-.
T Consensus 196 i--~i---~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 196 I--SI---SDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred C--CC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 11 1345677888888854 45544433
No 193
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=32.17 E-value=7e+02 Score=28.15 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=41.7
Q ss_pred EEEEEecCCChhh---H-HHhHHhcCC-CCCCcEEEEecCch---------HHHhhhccCCCcceeecCCCChHHHHHHH
Q 002780 222 YMVVFDDVWKIDF---W-GDVEHALLD-NKKCSRIIVTTRHM---------NVAKYCKSSSSVHVHELETLPPNEARKLF 287 (882)
Q Consensus 222 ~LlVLDdv~~~~~---~-~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf 287 (882)
-+|++||+..... + +.+...+.. ...|..||+||... .+...+.. +.++++++++.++-..++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~---Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEW---GIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcC---CeEEecCCCCHHHHHHHH
Confidence 3888999865421 1 222222211 11345688887542 22333322 268899999999999999
Q ss_pred HHHHcCC
Q 002780 288 CRKVLGP 294 (882)
Q Consensus 288 ~~~af~~ 294 (882)
.+++-..
T Consensus 281 ~~k~~~~ 287 (445)
T PRK12422 281 ERKAEAL 287 (445)
T ss_pred HHHHHHc
Confidence 8887553
No 194
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=31.38 E-value=2.5e+02 Score=32.77 Aligned_cols=98 Identities=11% Similarity=0.037 Sum_probs=61.7
Q ss_pred CCceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEE-EecCchHHHhhhccCCCcceeecCCCChHHHHHHHHHHHcCC
Q 002780 218 KDKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRII-VTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGP 294 (882)
Q Consensus 218 ~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~ 294 (882)
.+++-++|+|++... ..++.+...+..-.....+| +||....+........ ..++..+++.++....+.+.+-..
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc--~~~~f~~~~~~ei~~~L~~i~~~e 194 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRC--QRFDFKRISVEDIVERLKYILDKE 194 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHh--eEEecCCCCHHHHHHHHHHHHHHc
Confidence 355667899999754 56778877766544444444 4555554443332221 678899999999888888776433
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCChhHH
Q 002780 295 SSGGCCPSELKELSQDILAKCGGLPLAI 322 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~i~~~c~GlPLal 322 (882)
+- .. -.+....|++.++|-+..+
T Consensus 195 gi--~i---~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 195 GI--EY---EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred CC--CC---CHHHHHHHHHHcCCCHHHH
Confidence 21 11 1355677888888876543
No 195
>PF15237 PTRF_SDPR: PTRF/SDPR family
Probab=30.54 E-value=3.8e+02 Score=26.93 Aligned_cols=78 Identities=8% Similarity=0.150 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCchhHHHHHHHHHHHHhhhhhHHHH
Q 002780 5 AVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADARAAVEELEGGGEESVRTWVKQLRDEAYRIEDVID 84 (882)
Q Consensus 5 ~v~~~~~kl~~~l~~e~~~~~~v~~~~~~L~~~L~~i~a~l~~ae~~~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD~lD 84 (882)
.|-.+++|+..++..=-..+.+++..-..|+.....||+-|-...+.+.+- ...|...|.+.|.+.-++.+|-+
T Consensus 6 tVltLLdKl~~~vD~vQ~~Q~~mE~RQ~emE~sV~~IQ~dl~KLsk~H~~T------snTV~KLLeK~RKVS~~vk~Vr~ 79 (246)
T PF15237_consen 6 TVLTLLDKLAGMVDSVQETQQRMEERQREMEGSVKGIQGDLTKLSKSHSTT------SNTVNKLLEKTRKVSVNVKEVRE 79 (246)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcccH------HHHHHHHHHHHHHhhhhHHHHHH
Confidence 356789999999876666677888777888888888998888777654322 27899999999999999888776
Q ss_pred HHHH
Q 002780 85 EYTL 88 (882)
Q Consensus 85 ~~~~ 88 (882)
....
T Consensus 80 r~ek 83 (246)
T PF15237_consen 80 RLEK 83 (246)
T ss_pred HHHH
Confidence 6543
No 196
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.12 E-value=1.2e+03 Score=29.29 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh----hhcccccCCchhHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002780 26 GVRKEVQSIKTEMESLRSFLKDADAR----AAVEELEGGGEESVRTWVKQLRDEAYRIEDVIDEYTL 88 (882)
Q Consensus 26 ~v~~~~~~L~~~L~~i~a~l~~ae~~----~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD~lD~~~~ 88 (882)
.++..-..-+.+++.+|...+.+++- ...+ ..+.+..+....+.+++.|++.+-+|....
T Consensus 1651 sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~---~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~d 1714 (1758)
T KOG0994|consen 1651 SAKEQALSAEQGLEILQKYYELVDRLLEKRMEGS---QAARERAEQLRTEAEKLLGQANEKLDRLKD 1714 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555444444332 1111 111234555666677788888888777654
No 197
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=29.03 E-value=1.9e+02 Score=29.31 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=45.5
Q ss_pred CCCceEEeccchHHHHH---------------------------HHhhhhhcCCCCCcccCccCHHHHH--HHHHHHhCC
Q 002780 169 EDDEVVGIESIKDKLID---------------------------LMEFHRVTNEPAPVEIHDMEEMELI--TALRDHLKD 219 (882)
Q Consensus 169 ~~~~~vG~~~~~~~l~~---------------------------~~~i~~~~~~~~~~~~~~~~~~~~~--~~l~~~L~~ 219 (882)
+-..++|.|..++.|++ ++.++.+....-. .+-+.+.+++. ..|.+.|+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl-rLVEV~k~dl~~Lp~l~~~Lr~ 136 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL-RLVEVDKEDLATLPDLVELLRA 136 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC-eEEEEcHHHHhhHHHHHHHHhc
Confidence 34578999999999988 3333332222111 12233333332 245555654
Q ss_pred --ceEEEEEecCCCh---hhHHHhHHhcCCC
Q 002780 220 --KSYMVVFDDVWKI---DFWGDVEHALLDN 245 (882)
Q Consensus 220 --kr~LlVLDdv~~~---~~~~~l~~~l~~~ 245 (882)
+||.|..||..=+ +.+..++..+..+
T Consensus 137 ~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 137 RPEKFILFCDDLSFEEGDDAYKALKSALEGG 167 (287)
T ss_pred CCceEEEEecCCCCCCCchHHHHHHHHhcCC
Confidence 8999999999633 4677788777643
No 198
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=28.87 E-value=1e+02 Score=27.75 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=26.0
Q ss_pred hCCceEEEEEecCCCh--hhHHHhHHhcC---CC---CCCcEEEEecCchH
Q 002780 217 LKDKSYMVVFDDVWKI--DFWGDVEHALL---DN---KKCSRIIVTTRHMN 259 (882)
Q Consensus 217 L~~kr~LlVLDdv~~~--~~~~~l~~~l~---~~---~~gs~IivTTR~~~ 259 (882)
...+..+||+||++.. .....+...+. .. ..+.+||+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3456789999999864 22222333222 21 35778888888643
No 199
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=28.04 E-value=5.6e+02 Score=26.82 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=62.0
Q ss_pred HHHHHHHHHHH-hCCceEEEEEecCCCh---hhHHHhHHhcCCCCCCcEEEEecCchH----HHhhhccCCCcceeecCC
Q 002780 206 EMELITALRDH-LKDKSYMVVFDDVWKI---DFWGDVEHALLDNKKCSRIIVTTRHMN----VAKYCKSSSSVHVHELET 277 (882)
Q Consensus 206 ~~~~~~~l~~~-L~~kr~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~IivTTR~~~----v~~~~~~~~~~~~~~l~~ 277 (882)
.+++.+.+... |-+++-++|+++.... ..|+.+...+....++..+|+++-..+ ..+.........++...+
T Consensus 31 ~~~l~~~~~~~slf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~ 110 (302)
T TIGR01128 31 WNQLLEEAQTLPLFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKT 110 (302)
T ss_pred HHHHHHHhhccCcccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecC
Confidence 34444443332 4456677889988653 468888877777666666676664211 111121100125777788
Q ss_pred CChHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHH
Q 002780 278 LPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAI 322 (882)
Q Consensus 278 L~~~~~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal 322 (882)
++..+-.......+-..+- ... .+.+..++..++|-..++
T Consensus 111 ~~~~~~~~~i~~~~~~~g~--~i~---~~a~~~l~~~~~~d~~~l 150 (302)
T TIGR01128 111 PKEQELPRWIQARLKKLGL--RID---PDAVQLLAELVEGNLLAI 150 (302)
T ss_pred CCHHHHHHHHHHHHHHcCC--CCC---HHHHHHHHHHhCcHHHHH
Confidence 8887777777666544321 111 245566666666644433
No 200
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=27.55 E-value=4.6e+02 Score=25.59 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=35.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhh-----hhcccccCCchhHHHHHHHHHHHHhhhh
Q 002780 24 WGGVRKEVQSIKTEMESLRSFLKDADAR-----AAVEELEGGGEESVRTWVKQLRDEAYRI 79 (882)
Q Consensus 24 ~~~v~~~~~~L~~~L~~i~a~l~~ae~~-----~~~~~~~~~~~~~~~~wl~~lr~~ayd~ 79 (882)
+.+....++.+++|+..++.-+..++.+ ...+ .-|..||.+...-|-.+
T Consensus 139 l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~-------~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 139 LKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR-------ELVERWMQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 4556677888888888888888777765 2333 88999998887666443
No 201
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.62 E-value=23 Score=39.75 Aligned_cols=81 Identities=16% Similarity=0.111 Sum_probs=49.7
Q ss_pred CCCCccEEEEeecCCCcc-cchhh-cCCCccceeEeecc--cCCCeEEEccCCCcccceeEecccCCceeeEEc------
Q 002780 721 KLKNLIRLGLDLSGLTEE-PIRVL-QTLPNLLELRFTGA--YNYELFHFEAGWFPKLQKLLLWEFKAVKSVIIE------ 790 (882)
Q Consensus 721 ~l~~L~~L~L~~~~l~~~-~~~~l-~~l~~L~~L~L~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~------ 790 (882)
+.+.+..+.|++|++... ....+ ..-|+|+.|+|++| .........--....|++|.+.+|+.-+.....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 567888999999987431 12222 45789999999988 322222222223556888888888865543211
Q ss_pred -CCCccCccEEE
Q 002780 791 -KGAMPDIRELW 801 (882)
Q Consensus 791 -~~~~~~L~~L~ 801 (882)
...||+|..|+
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 12578777765
No 202
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=25.31 E-value=7.1e+02 Score=28.05 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=52.3
Q ss_pred ceEEEEEecCCCh---hhH-HHhHHhcCC-CCCCcEEEEecC-chHH--------HhhhccCCCcceeecCCCChHHHHH
Q 002780 220 KSYMVVFDDVWKI---DFW-GDVEHALLD-NKKCSRIIVTTR-HMNV--------AKYCKSSSSVHVHELETLPPNEARK 285 (882)
Q Consensus 220 kr~LlVLDdv~~~---~~~-~~l~~~l~~-~~~gs~IivTTR-~~~v--------~~~~~~~~~~~~~~l~~L~~~~~~~ 285 (882)
+.-+||+||+... ..+ +.+...+.. ...|..||+||. ...- ...+... .+.++++.+.+.-..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g---l~v~i~~pd~e~r~~ 270 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG---LVAKLEPPDEETRKK 270 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC---ceEeeCCCCHHHHHH
Confidence 3458999999743 112 223222221 112446888874 3222 2222222 578999999999999
Q ss_pred HHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCC
Q 002780 286 LFCRKVLGPSSGGCCPSELKELSQDILAKCGGL 318 (882)
Q Consensus 286 Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~Gl 318 (882)
++.+++-...- ..+ .++..-|++.+.|-
T Consensus 271 IL~~~~~~~~~--~l~---~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 271 IARKMLEIEHG--ELP---EEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHHHhcCC--CCC---HHHHHHHHhccccC
Confidence 99988754321 222 35667777777664
No 203
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=24.89 E-value=2.1e+02 Score=20.75 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=25.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 002780 21 IKLWGGVRKEVQSIKTEMESLRSFLKDADAR 51 (882)
Q Consensus 21 ~~~~~~v~~~~~~L~~~L~~i~a~l~~ae~~ 51 (882)
+.++..+.+.++.|...|+.|.+-|++.|.+
T Consensus 15 v~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 15 VAFQNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567778888899999999999888888765
No 204
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=24.74 E-value=1.1e+02 Score=27.29 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=33.2
Q ss_pred cCHHHHHHHHHHHhCCce-EEEEEecCCCh---hhHHHhHHhcCCCCCCcEEEEecCc
Q 002780 204 MEEMELITALRDHLKDKS-YMVVFDDVWKI---DFWGDVEHALLDNKKCSRIIVTTRH 257 (882)
Q Consensus 204 ~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~IivTTR~ 257 (882)
.+..++.+.+.+.+...+ .+||+|++... ..++.+.... + ..+.+||+..+.
T Consensus 70 ~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 70 QTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp S-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 356777788888887654 59999999654 2344444332 3 556677776554
No 205
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=23.73 E-value=1.7e+02 Score=28.63 Aligned_cols=50 Identities=20% Similarity=0.125 Sum_probs=33.5
Q ss_pred HHHHHHHHhCC-ceEEEEEecCCChh-----hHHHhHHhcCCCCCCcEEEEecCch
Q 002780 209 LITALRDHLKD-KSYMVVFDDVWKID-----FWGDVEHALLDNKKCSRIIVTTRHM 258 (882)
Q Consensus 209 ~~~~l~~~L~~-kr~LlVLDdv~~~~-----~~~~l~~~l~~~~~gs~IivTTR~~ 258 (882)
.....++.+.. +-=|||||.+-..- ..+++...+..-.++.-||+|-|+.
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 34445555544 55599999996542 3456666666556677899999985
No 206
>PRK10869 recombination and repair protein; Provisional
Probab=23.31 E-value=7.2e+02 Score=29.02 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 002780 63 ESVRTWVKQLRDEAYRIEDVIDEYTLMV 90 (882)
Q Consensus 63 ~~~~~wl~~lr~~ayd~eD~lD~~~~~~ 90 (882)
+.+......+.++.|+++|+.+++....
T Consensus 261 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 288 (553)
T PRK10869 261 SKLSGVLDMLEEALIQIQEASDELRHYL 288 (553)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999998885543
No 207
>PLN03188 kinesin-12 family protein; Provisional
Probab=23.09 E-value=9.3e+02 Score=30.80 Aligned_cols=45 Identities=24% Similarity=0.212 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhh
Q 002780 6 VNFAIETLGPLLVEKIKLWG-GVRKEVQSIKTEMESLRSFLKDADA 50 (882)
Q Consensus 6 v~~~~~kl~~~l~~e~~~~~-~v~~~~~~L~~~L~~i~a~l~~ae~ 50 (882)
|..+-.+.+.+|+.|+..+. .-+++.+.|++|=..+|+-|+|..+
T Consensus 1149 ~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtae 1194 (1320)
T PLN03188 1149 VRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAE 1194 (1320)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Confidence 44445677778888877663 4457888899999999999987654
No 208
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=22.87 E-value=4.1e+02 Score=28.56 Aligned_cols=69 Identities=10% Similarity=0.036 Sum_probs=41.2
Q ss_pred CceEEEEEecCCCh--hhHHHhHHhcCCCCCCcEEEEecCch-HHHhhhccCCCcceeecCCCChHHHHHHHHHH
Q 002780 219 DKSYMVVFDDVWKI--DFWGDVEHALLDNKKCSRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEARKLFCRK 290 (882)
Q Consensus 219 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 290 (882)
++|+. |+|++... ..-+.+...+.....+..+|+||.+. .+...+.... ..+.+.+++.+++.+.+...
T Consensus 113 ~~kV~-iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc--~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVI-LIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC--RKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEE-EEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHh--hhhcCCCCCHHHHHHHHHhc
Confidence 34554 45777654 33445555554433455566666664 4544433222 68899999999988877653
No 209
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=21.91 E-value=2.2e+02 Score=27.68 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=34.3
Q ss_pred HHHHHHHhCCceE-EEEEecCCCh-----hhHHHhHHhcCCCCCCcEEEEecCch
Q 002780 210 ITALRDHLKDKSY-MVVFDDVWKI-----DFWGDVEHALLDNKKCSRIIVTTRHM 258 (882)
Q Consensus 210 ~~~l~~~L~~kr~-LlVLDdv~~~-----~~~~~l~~~l~~~~~gs~IivTTR~~ 258 (882)
.+.-++.+.+.+| |+|||.+.-. -.++++...+..-....-||+|-|..
T Consensus 111 w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~a 165 (198)
T COG2109 111 WEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGA 165 (198)
T ss_pred HHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCC
Confidence 3445556666444 9999998532 35677777777666778899999973
No 210
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=21.80 E-value=2.8e+02 Score=21.15 Aligned_cols=53 Identities=15% Similarity=0.461 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCchhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 002780 32 QSIKTEMESLRSFLKDADARAAVEELEGGGEESVRTWVKQLRDEAYRIEDVIDEYTLMV 90 (882)
Q Consensus 32 ~~L~~~L~~i~a~l~~ae~~~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD~lD~~~~~~ 90 (882)
..|+.=|..|..+++-.......+ .+..+.++..++..+..+.++++++....
T Consensus 11 Helr~PL~~i~~~~~~l~~~~~~~------~~~~~~~l~~i~~~~~~l~~li~~ll~~s 63 (68)
T PF00512_consen 11 HELRNPLTAIRGYLELLERDSDLD------PEQLREYLDRIRSAADRLNELINDLLDFS 63 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCC-------HHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777776622222 14568999999999999999999886543
No 211
>PRK15366 type III secretion system chaperone SsaE; Provisional
Probab=21.38 E-value=4.4e+02 Score=21.25 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCchhHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 002780 29 KEVQSIKTEMESLRSFLKDADARAAVEELEGGGEESVRTWVKQLRDEAYRIEDVIDEYTLMVA 91 (882)
Q Consensus 29 ~~~~~L~~~L~~i~a~l~~ae~~~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD~lD~~~~~~~ 91 (882)
++.+.+-+.|...+.-|+.|-++.. + +.-..-+..+++++-.|++||+..-++..
T Consensus 16 ~~a~~~i~~L~aa~~rL~~al~~P~-s-------p~qYqq~t~l~ea~lqA~~IIn~i~~ryh 70 (80)
T PRK15366 16 EEAKGIILQLRAARKQLEENNGKLQ-D-------PQQYQQNTLLLEAIEQAENIINIIYYRYH 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666666666655433 2 55567788999999999999998866543
No 212
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=20.59 E-value=1.7e+02 Score=28.14 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=33.2
Q ss_pred HHHHHHHHhCC-ceEEEEEecCCCh-----hhHHHhHHhcCCCCCCcEEEEecCch
Q 002780 209 LITALRDHLKD-KSYMVVFDDVWKI-----DFWGDVEHALLDNKKCSRIIVTTRHM 258 (882)
Q Consensus 209 ~~~~l~~~L~~-kr~LlVLDdv~~~-----~~~~~l~~~l~~~~~gs~IivTTR~~ 258 (882)
..+..++.+.. +-=|||||.+-.. -..+++...+..-.++.-||+|-|+.
T Consensus 103 ~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 103 LWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred HHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC
Confidence 34445555544 5569999998643 23455666666556677899999983
No 213
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=20.49 E-value=7.4e+02 Score=26.68 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCchhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 002780 24 WGGVRKEVQSIKTEMESLRSFLKDADARAAVEELEGGGEESVRTWVKQLRDEAYRIEDVIDEYTLMV 90 (882)
Q Consensus 24 ~~~v~~~~~~L~~~L~~i~a~l~~ae~~~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD~lD~~~~~~ 90 (882)
+..++.-+.+|+++.+.|.+.++.|-++.... ..++.=++++++=.-.-.+-|+|..-+.
T Consensus 259 ldTIsrLV~RL~deIE~~~~~v~fave~~~d~-------~~vk~vv~el~k~~~~f~~qleELeehv 318 (336)
T PF05055_consen 259 LDTISRLVDRLEDEIEHMKALVDFAVERGEDE-------EAVKEVVKELKKNVESFTEQLEELEEHV 318 (336)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc-------hhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34566777888888888888888887766544 5677777777776666666666665443
No 214
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=20.39 E-value=5e+02 Score=26.69 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=39.9
Q ss_pred EEEEEecCCCh----------hhHHHhHHhcCCCCCCcEEEEecCchHH----------HhhhccCCCcceeecCCCChH
Q 002780 222 YMVVFDDVWKI----------DFWGDVEHALLDNKKCSRIIVTTRHMNV----------AKYCKSSSSVHVHELETLPPN 281 (882)
Q Consensus 222 ~LlVLDdv~~~----------~~~~~l~~~l~~~~~gs~IivTTR~~~v----------~~~~~~~~~~~~~~l~~L~~~ 281 (882)
-+|++|++... +..+.+...+......-.+|+++..... ...+ ...+++++++.+
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf-----~~~i~f~~~~~~ 181 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF-----PISIDFPDYTVE 181 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc-----ceEEEECCCCHH
Confidence 37889999642 2344454444444333355555543322 2222 146788999999
Q ss_pred HHHHHHHHHHcC
Q 002780 282 EARKLFCRKVLG 293 (882)
Q Consensus 282 ~~~~Lf~~~af~ 293 (882)
+-.+++.+.+-.
T Consensus 182 el~~Il~~~~~~ 193 (261)
T TIGR02881 182 ELMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999998877644
No 215
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=20.13 E-value=3.1e+02 Score=21.98 Aligned_cols=9 Identities=11% Similarity=0.767 Sum_probs=6.9
Q ss_pred hHHHHHHHH
Q 002780 63 ESVRTWVKQ 71 (882)
Q Consensus 63 ~~~~~wl~~ 71 (882)
+.++.||++
T Consensus 45 PmLkeWLD~ 53 (73)
T PF10691_consen 45 PMLKEWLDE 53 (73)
T ss_pred HHHHHHHHh
Confidence 778888764
No 216
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.05 E-value=2.5e+02 Score=26.37 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCchhHHHHHHHHHHHHhhhhhH
Q 002780 29 KEVQSIKTEMESLRSFLKDADARAAVEELEGGGEESVRTWVKQLRDEAYRIED 81 (882)
Q Consensus 29 ~~~~~L~~~L~~i~a~l~~ae~~~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD 81 (882)
+.+.+..++|..+|..|-+.-. .+. +.++.|+..+.++...-.+
T Consensus 49 ~~L~~ae~~Ln~vQ~~L~~l~d--~~~-------d~~~~~l~km~kA~rgE~~ 92 (169)
T PF09869_consen 49 KELKDAEKELNSVQSILFDLCD--EGE-------DYRKKWLDKMKKASRGELV 92 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--ccH-------HHHHHHHHHHHHHhccchh
Confidence 5677888899999988887665 333 6889999999998865543
Done!