Query 002780
Match_columns 882
No_of_seqs 437 out of 5322
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 18:40:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002780.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1492-1496//hhsearch_pdb/002780hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 299.1 14.9 236 201-463 223-473 (549)
2 3rgz_A Protein brassinosteroid 1.0 1 1 285.6 10.8 336 524-876 294-723 (768)
3 3rgz_A Protein brassinosteroid 1.0 1 1 281.6 11.4 381 476-877 223-700 (768)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 276.2 21.5 226 204-461 218-452 (1249)
5 4eco_A Uncharacterized protein 1.0 1 1 270.7 11.6 343 494-872 202-602 (636)
6 4ecn_A Leucine-rich repeat pro 1.0 1 1 267.8 13.1 348 494-876 444-846 (876)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 263.2 16.4 384 475-878 31-566 (606)
8 4ecn_A Leucine-rich repeat pro 1.0 1 1 258.0 15.2 336 516-878 440-826 (876)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 257.0 13.1 286 525-830 262-556 (606)
10 4eco_A Uncharacterized protein 1.0 1 1 256.5 12.5 337 516-878 198-586 (636)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=299.09 Aligned_cols=236 Identities=15% Similarity=0.207 Sum_probs=192.1
Q ss_pred CCCCCHHHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHCCCCCCCEEECCCCC
Q ss_conf 47357899999999971794-08999946889135778588137999983899964864787431049983215437999
Q 002780 201 IHDMEEMELITALRDHLKDK-SYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLP 279 (882)
Q Consensus 201 ~~~~~~~~~~~~l~~~L~~k-r~LiVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~l~~L~ 279 (882)
....+...+...+++.|.++ ||||||||||+.+++ .+.. .+||+||||||++.++..++.. ..+|+|++|+
T Consensus 223 ~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~--~~~~~l~~L~ 294 (549)
T 2a5y_B 223 VEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT--CEFIEVTSLE 294 (549)
T ss_dssp CTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC--EEEEECCCCC
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CCCC-----CCCCEEEEECCCHHHHHHCCCC--CEEEECCCCC
T ss_conf 331469999999999976898489999799971441-5432-----6998899974977999970889--7389899989
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 47799999999719999999982689999999999099713899998775089989679999998830001899870448
Q 002780 280 PNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHLKDC 359 (882)
Q Consensus 280 ~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 359 (882)
+++||+||.++||... .++++.+++++|+++|+|+||||+++|+.|+.+ .++|...+....+... ...+
T Consensus 295 ~~ea~~Lf~~~a~~~~----~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~---~w~~~~~l~~~l~~~~----~~~i 363 (549)
T 2a5y_B 295 IDECYDFLEAYGMPMP----VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK---TFEKMAQLNNKLESRG----LVGV 363 (549)
T ss_dssp HHHHHHHHHHTSCCCC------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS---SHHHHHHHHHHHHHHC----SSTT
T ss_pred HHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC---HHHHHHHHHHHHHCCC----HHHH
T ss_conf 8999999998744899----855689999999999599839999999984434---4899987578761364----7778
Q ss_pred HHHHHHCCCCCCCCHHHHHH-----------HCCCCCCCCEECHHHHHHHHHHC--CCCCCCC-CCCHHHHHHHHHHHHH
Q ss_conf 99987201799801467872-----------21555788300247899999981--8532599-9998999999999997
Q 002780 360 NRVLSEGYYALPHHLKSCLL-----------SFGLFQESCKVNCARLIRLWIAE--GFVQYSK-RPTSEQVAEEYLNELI 425 (882)
Q Consensus 360 ~~~l~~sy~~L~~~~k~cfl-----------~~a~fp~~~~i~~~~li~~w~a~--g~i~~~~-~~~~e~~~~~~~~~L~ 425 (882)
..++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+...+ +.+.+++++ |+++|+
T Consensus 364 ~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~ 438 (549)
T 2a5y_B 364 ECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLS 438 (549)
T ss_dssp CCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHHHHHH-HHHHHH
T ss_conf 9897516202267999997526522336743235608997666----53311013550026778999999999-999998
Q ss_pred HCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 48820100259999675844119999999998667096
Q 002780 426 DRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGF 463 (882)
Q Consensus 426 ~~sll~~~~~~~~~~~~~~~~hdli~d~~~~~~~e~~~ 463 (882)
++||++....+ ...+|+|||++|+++..++.++++
T Consensus 439 ~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 439 KRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp TBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HCCCEEEECCC---CCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 75883671479---804999676999999999889899
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=285.57 Aligned_cols=336 Identities=18% Similarity=0.203 Sum_probs=229.2
Q ss_pred CEEEEEEECCCCCC-CCCCCCCCCCCCCEEEEECCCCC-CCCCC-CCCCCCCCEEECCCCCCC-CCCHHHHCCC-CCCEE
Q ss_conf 53229971699998-78623577668818887058873-13601-027899959971686453-2454310463-46725
Q 002780 524 KLIKVLDLEDAPVD-YLPEGVGNLFNLHYLSLRNTKVK-IIPTS-IGNLLSLETLNMKNTLVR-ELPVEIRNLK-KLRYL 598 (882)
Q Consensus 524 ~~Lr~L~L~~~~~~-~l~~~i~~l~~L~~L~L~~~~i~-~lp~~-i~~l~~L~~L~L~~~~~~-~lp~~i~~l~-~L~~L 598 (882)
+.|++|++++|.+. .+|..++.+++|++|++++|.+. .+|.. +..+++|++|++++|.+. .+|..+..++ +|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEE
T ss_conf 86889989689677842367755877667789788525737978872488887884847843762309898632277199
Q ss_pred ECCCCCCCCCCCH----------H-----HHHHHCCCCCCCCCCCCCCCCCCEECC--HHHHHHHCCCCCCCEEEEEECC
Q ss_conf 4132024578750----------1-----211001234723577556414610069--7849970178887399988269
Q 002780 599 MVYQYHYTSGSSI----------T-----EEAAVAKVRGGFGSLTNLQKLSIIEAD--SQVLKELMKLRQLRMLSIRPQN 661 (882)
Q Consensus 599 ~l~~n~~~~~~~~----------~-----~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~ 661 (882)
++++|.+.+.... . .......+|..++++++|+.|++..|. ...+..+..+++|+.|+++.|.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred ECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 86278747876766653324776189897784654248777568987989895884668546777449988989897881
Q ss_pred CCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 972068898204999777897635975333467888888774378960249--999910038999418999602789642
Q 002780 662 GNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNM--KKLPDWIFKLKNLIRLGLDLSGLTEEP 739 (882)
Q Consensus 662 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~ 739 (882)
... ..+..+..+++|+.|++++|.+.+..+ ..+...+ +|+.|++++|. +.+|.++..+++|+.|++++|.+.+..
T Consensus 454 l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 454 LEG-EIPQELMYVKTLETLILDFNDLTGEIP-SGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp CCS-CCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CCC-CCCHHHCCCCCCEEEEECCCCCCCCCC-HHHHCCC-CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 547-189788287773299901995137588-7881699-8998975399518968768856899998989789433748
Q ss_pred CHHHCCCCCCCEEEEECCCCCCEEEE------------------------------------------------------
Q ss_conf 10102787556158413568883788------------------------------------------------------
Q 002780 740 IRVLQTLPNLLELRFTGAYNYELFHF------------------------------------------------------ 765 (882)
Q Consensus 740 ~~~l~~l~~L~~L~L~~~~~~~~~~~------------------------------------------------------ 765 (882)
+..++.+++|+.|++++|.+.+.++.
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred CHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 87770889899898988846882795786042122320134542111134443222233222100135563232002321
Q ss_pred ----------------CCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf ----------------2588755546672646885015985797658548886038986743642224646767899447
Q 002780 766 ----------------EAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGM 829 (882)
Q Consensus 766 ----------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~l~~l~~L~~L~l~~~ 829 (882)
.++.+++|+.|++++|...+.+|..++.++.|+.|++++|...+.+|..+..+++|+.|++++|
T Consensus 611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N 690 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690 (768)
T ss_dssp CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC
T ss_conf 10011331004627433403356657978588015558778841415787848688038878967847778998989788
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 58999831355656421444628999820661012223446899876
Q 002780 830 VKQVYYMTKDENWGKVTENIPDVLVTFMEAGQLFHYRKDILSSLSPE 876 (882)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~ip~~~~~~~~l~~l~l~~N~~~~~~p~~ 876 (882)
++.+.+|..+..+++|+.|++++|++.+.+|..
T Consensus 691 --------------~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 691 --------------KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp --------------CCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred --------------CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC
T ss_conf --------------023868867757887897879688155608996
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=281.58 Aligned_cols=381 Identities=17% Similarity=0.133 Sum_probs=203.4
Q ss_pred CCEEEEEEECCCCCC--CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCC-CCCCCCCCC-CCCCE
Q ss_conf 984999996457854--11223566311899823799995211112247753229971699998-786235776-68818
Q 002780 476 SKTRRITVQRSIDDG--ALESIKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVD-YLPEGVGNL-FNLHY 551 (882)
Q Consensus 476 ~~~r~l~i~~~~~~~--~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~-~l~~~i~~l-~~L~~ 551 (882)
+..+++.+..+.... ......+++|+.|.+.++.. ....+. ..++.|++|++++|.+. .+|..+... ++|++
T Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l--~~~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~ 298 (768)
T 3rgz_A 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF--VGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298 (768)
T ss_dssp CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC--EESCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSE
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC--CCCCCC--CCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCE
T ss_conf 9999897948858781657774488889898988866--571672--436878989791785577258888844686889
Q ss_pred EEEECCCCC-CCCCCCCCCCCCCEEECCCCCCC-CCCHH-HHCCCCCCEEECCCCCCCCCCC--HHHHH-----------
Q ss_conf 887058873-13601027899959971686453-24543-1046346725413202457875--01211-----------
Q 002780 552 LSLRNTKVK-IIPTSIGNLLSLETLNMKNTLVR-ELPVE-IRNLKKLRYLMVYQYHYTSGSS--ITEEA----------- 615 (882)
Q Consensus 552 L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~-~lp~~-i~~l~~L~~L~l~~n~~~~~~~--~~~~~----------- 615 (882)
|++++|.+. .+|..+..+++|++|++++|.+. .+|.. +..+++|++|++++|.+.+..+ +....
T Consensus 299 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp EECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSS
T ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCC
T ss_conf 98968967784236775587766778978852573797887248888788484784376230989863227719986278
Q ss_pred -HHCCCCCCCCC--CCCCCCCCCEECC--HHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf -00123472357--7556414610069--784997017888739998826997206889820499977789763597533
Q 002780 616 -AVAKVRGGFGS--LTNLQKLSIIEAD--SQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEM 690 (882)
Q Consensus 616 -~~~~~~~~~~~--l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 690 (882)
....+|..+.. +++|+.|++..|. ...+..+..+++|+.|+++.|.... ..+..+..+++|+.|.+++|...+.
T Consensus 379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-TIPSSLGSLSKLRDLKLWLNMLEGE 457 (768)
T ss_dssp EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 747876766653324776189897784654248777568987989895884668-5467774499889898978815471
Q ss_pred CCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCCCEEEECCC
Q ss_conf 3467888888774378960249--99991003899941899960278964210102787556158413568883788258
Q 002780 691 LDLQSLSSPPQYLQRLHLTGNM--KKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAG 768 (882)
Q Consensus 691 ~~l~~l~~~~~~L~~L~l~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 768 (882)
.+ ..+...+ +|+.|++++|. +.+|.++..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+.++..++
T Consensus 458 ~p-~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 458 IP-QELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp CC-GGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred CC-HHHCCCC-CCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHC
T ss_conf 89-7882877-732999019951375887881699899897539951896876885689999898978943374887770
Q ss_pred CCCCCCEEEECCCCCCEEEEE-----------------------------------------------------------
Q ss_conf 875554667264688501598-----------------------------------------------------------
Q 002780 769 WFPKLQKLLLWEFKAVKSVII----------------------------------------------------------- 789 (882)
Q Consensus 769 ~~~~L~~L~l~~~~~l~~~~~----------------------------------------------------------- 789 (882)
.+++|+.|++++|+....+|.
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 88989989898884688279578604212232013454211113444322223322210013556323200232110011
Q ss_pred -----------CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf -----------579765854888603898674364222464676789944758999831355656421444628999820
Q 002780 790 -----------EKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGMVKQVYYMTKDENWGKVTENIPDVLVTFME 858 (882)
Q Consensus 790 -----------~~~~~~~L~~L~l~~c~~l~~ip~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 858 (882)
.++.+++|+.|++++|...+.+|..+..+++|+.|++++| ++.+.+|..+..+++
T Consensus 616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N--------------~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN--------------DISGSIPDEVGDLRG 681 (768)
T ss_dssp TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS--------------CCCSCCCGGGGGCTT
T ss_pred CCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC--------------CCCCCCCHHHHCCCC
T ss_conf 331004627433403356657978588015558778841415787848688--------------038878967847778
Q ss_pred CCCCCCCCCCCCCCCCHHH
Q ss_conf 6610122234468998767
Q 002780 859 AGQLFHYRKDILSSLSPEY 877 (882)
Q Consensus 859 l~~l~l~~N~~~~~~p~~~ 877 (882)
|+.|++++|++++.+|..+
T Consensus 682 L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp CCEEECCSSCCEECCCGGG
T ss_pred CCEEECCCCCCCCCCCHHH
T ss_conf 9989897880238688677
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=276.22 Aligned_cols=226 Identities=22% Similarity=0.336 Sum_probs=186.2
Q ss_pred CCHHHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHCCCCCCCEEECCC-CCH
Q ss_conf 57899999999971794--089999468891357785881379999838999648647874310499832154379-994
Q 002780 204 MEEMELITALRDHLKDK--SYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELET-LPP 280 (882)
Q Consensus 204 ~~~~~~~~~l~~~L~~k--r~LiVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~l~~-L~~ 280 (882)
.+.+.+...++..+.++ ||||||||||+.++|..+ ++||+||||||++.++..+... ...+.+++ |++
T Consensus 218 ~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~--~~~~~~~~~l~~ 288 (1249)
T 3sfz_A 218 LNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGP--KHVVPVESGLGR 288 (1249)
T ss_dssp SSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSC--BCCEECCSSCCH
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHHHHHHCCC--CEEEEECCCCCH
T ss_conf 7778999999999735678789999567997788763-------6897899992778998763488--437982588887
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC------CC
Q ss_conf 779999999971999999998268999999999909971389999877508998967999999883000189------98
Q 002780 281 NEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGS------DP 354 (882)
Q Consensus 281 ~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~~~w~~~~~~~~~~~~~------~~ 354 (882)
+++++||...++... ..+.+.+++|+++|+|+||||+++|++|+.+.. .|...++.+...... ..
T Consensus 289 ~~a~~l~~~~~~~~~------~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~---~~~~~l~~l~~~~~~~~~~~~~~ 359 (1249)
T 3sfz_A 289 EKGLEILSLFVNMKK------EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN---RWAYYLRQLQNKQFKRIRKSSSY 359 (1249)
T ss_dssp HHHHHHHHHHHTSCS------TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS---CHHHHHHHHHSCCCCCSSCTTCT
T ss_pred HHHHHHHHHHHCCCH------HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 889999998657981------348388999999849977999999998624805---79999999865044303465564
Q ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 70448999872017998014678722155578830024789999998185325999998999999999997488201002
Q 002780 355 HLKDCNRVLSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSK 434 (882)
Q Consensus 355 ~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~~~~L~~~sll~~~~ 434 (882)
....+..+|.+||+.||+++|.||+|||+||+++.|++..++.+|.++ ++.++.++.+|+++||++...
T Consensus 360 ~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~ 428 (1249)
T 3sfz_A 360 DYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNR 428 (1249)
T ss_dssp THHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEE
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC-----------HHHHHHHHHHHHHCCCEEEEC
T ss_conf 467799999989986799999999972813799751899999885898-----------889999999997446338963
Q ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 599996758441199999999986670
Q 002780 435 RDISGRARICQVHDLMHQIIIRKTEEL 461 (882)
Q Consensus 435 ~~~~~~~~~~~~hdli~d~~~~~~~e~ 461 (882)
.++..+|+||+++++++...+.++
T Consensus 429 ---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 429 ---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ---CCCCEEEEECHHHHHHHHHHHHHH
T ss_conf ---798118996689999987450678
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=270.70 Aligned_cols=343 Identities=15% Similarity=0.149 Sum_probs=250.8
Q ss_pred CCCCCCEEEEEEECCCCCCCC----------------CCCCCCC--CCCEEEEEEECCCCCC-CCCCCCCCCCCCCEEEE
Q ss_conf 235663118998237999952----------------1111224--7753229971699998-78623577668818887
Q 002780 494 SIKESKVRSVFLFNVDKLPDS----------------FMNASIA--NFKLIKVLDLEDAPVD-YLPEGVGNLFNLHYLSL 554 (882)
Q Consensus 494 ~~~~~~lrsL~~~~~~~~~~~----------------~~~~~~~--~~~~Lr~L~L~~~~~~-~l~~~i~~l~~L~~L~L 554 (882)
...+++|+.|.+.++.. ... .++..+. ++++|++|++++|.+. .+|..++.+++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPF-VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHCCCCCCEEECCCCCC-CCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 72564787898868823-66423221222221001024863220044687888980488577628388834999788978
Q ss_pred ECCC-CC--CCCCCCCCC------CCCCEEECCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 0588-73--136010278------999599716864532454--310463467254132024578750121100123472
Q 002780 555 RNTK-VK--IIPTSIGNL------LSLETLNMKNTLVRELPV--EIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGG 623 (882)
Q Consensus 555 ~~~~-i~--~lp~~i~~l------~~L~~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 623 (882)
++|. ++ .+|..++.+ ++|++|++++|.+..+|. .+..+++|++|++++|.+. ..+| .
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~-----------g~ip-~ 348 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-----------GKLP-A 348 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE-----------EECC-C
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-----------CCHH-H
T ss_conf 479887665335788754304657888889897993776676555425788898969088070-----------5166-6
Q ss_pred CCCCCCCCCCCCEECCH-HHHHHHCCCCC-CCEEEEEECCCCCHHHHHHHCCCC--CCCEEEEEECCCCCCCCCCCCC--
Q ss_conf 35775564146100697-84997017888-739998826997206889820499--9777897635975333467888--
Q 002780 624 FGSLTNLQKLSIIEADS-QVLKELMKLRQ-LRMLSIRPQNGNGKDLCALITNLE--NLETLTVEMTSKEEMLDLQSLS-- 697 (882)
Q Consensus 624 ~~~l~~L~~L~l~~~~~-~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~l~~l~-- 697 (882)
++.+++|+.|++.++.. ..+..+..+++ |+.|+++.|.... ++..+...+ +|+.|++++|.+....+ ..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~~ 425 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDG-KNFDPL 425 (636)
T ss_dssp CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSCTTTTTT-CSSCTT
T ss_pred HCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCC--CCHHHHHCCCCCCCEEECCCCCCCCCCH-HHHCCC
T ss_conf 4788988989898994030337565102368689852982754--4665533345766889774885788652-442002
Q ss_pred -----CCCCCCCEEEEECC-CCCCCCCC-CCCCCCCEEEEEECCCCCCCCHHHCCC-------CCCCEEEEECCCCCCEE
Q ss_conf -----88877437896024-99999100-389994189996027896421010278-------75561584135688837
Q 002780 698 -----SPPQYLQRLHLTGN-MKKLPDWI-FKLKNLIRLGLDLSGLTEEPIRVLQTL-------PNLLELRFTGAYNYELF 763 (882)
Q Consensus 698 -----~~~~~L~~L~l~~~-~~~lp~~~-~~l~~L~~L~L~~~~l~~~~~~~l~~l-------~~L~~L~L~~~~~~~~~ 763 (882)
... +|+.|++++| ...+|..+ ..+++|+.|++++|.++..+...+..+ ++|+.|++++|.+. .+
T Consensus 426 ~~~~~~~~-~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 503 (636)
T 4eco_A 426 DPTPFKGI-NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL 503 (636)
T ss_dssp CSSCCCCC-CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC
T ss_pred CCCCCCCC-CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CC
T ss_conf 20112589-88889772796686787887158988989897997887397884044001221477338989699388-16
Q ss_pred EECCC--CCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEEE------CCCCCCCCCCCCCCCCCCCEEEEECCHHHHHH
Q ss_conf 88258--87555466726468850159857976585488860------38986743642224646767899447589998
Q 002780 764 HFEAG--WFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIG------PCPLLMEIPIGIEHLKNLKLLVFAGMVKQVYY 835 (882)
Q Consensus 764 ~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~------~c~~l~~ip~~l~~l~~L~~L~l~~~~~~~~~ 835 (882)
+..+. .+++|+.|++++|.... +|..+..+++|+.|+++ +|...+.+|..+..+++|++|++++|.
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~----- 577 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND----- 577 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-----
T ss_pred CHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCC-----
T ss_conf 854534458876989898998877-68235308887878898886656673121273778569987889898994-----
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 3135565642144462899982066101222344689
Q 002780 836 MTKDENWGKVTENIPDVLVTFMEAGQLFHYRKDILSS 872 (882)
Q Consensus 836 ~~~~~~~~~~~~~ip~~~~~~~~l~~l~l~~N~~~~~ 872 (882)
+ +.+|..+. ++|+.|++++|++.+.
T Consensus 578 ---------l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 578 ---------I-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp ---------C-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred ---------C-CCCCHHHH--CCCCEEECCCCCCCCC
T ss_conf ---------7-70597683--8678998769987633
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=267.80 Aligned_cols=348 Identities=14% Similarity=0.136 Sum_probs=211.8
Q ss_pred CCCCCCEEEEEEECCCCCCCC---------------CCCCCCC--CCCEEEEEEECCCCCC-CCCCCCCCCCCCCEEEEE
Q ss_conf 235663118998237999952---------------1111224--7753229971699998-786235776688188870
Q 002780 494 SIKESKVRSVFLFNVDKLPDS---------------FMNASIA--NFKLIKVLDLEDAPVD-YLPEGVGNLFNLHYLSLR 555 (882)
Q Consensus 494 ~~~~~~lrsL~~~~~~~~~~~---------------~~~~~~~--~~~~Lr~L~L~~~~~~-~l~~~i~~l~~L~~L~L~ 555 (882)
...+++|+.|.+.++...... .+|..+. ++++|++|+|++|.+. .+|..++.+++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECC
T ss_conf 75699987897968867887465322332222224458744402559997789871898875273877379998999896
Q ss_pred CCC-CC--CCCCCCCCCC-------CCCEEECCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 588-73--1360102789-------99599716864532454--310463467254132024578750121100123472
Q 002780 556 NTK-VK--IIPTSIGNLL-------SLETLNMKNTLVRELPV--EIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGG 623 (882)
Q Consensus 556 ~~~-i~--~lp~~i~~l~-------~L~~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 623 (882)
+|. ++ .+|..++.+. +|++|++++|.+..+|. .+..+++|++|++++|.+. .+| .
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~------------~lp-~ 590 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR------------HLE-A 590 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC------------BCC-C
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCC------------CCH-H
T ss_conf 898765664617787523301556883199822894776187235515898898989799825------------621-2
Q ss_pred CCCCCCCCCCCCEECCH-HHHHHHCCCCC-CCEEEEEECCCCCHHHHHHHCCCC--CCCEEEEEECCCCCCCC-CC-CCC
Q ss_conf 35775564146100697-84997017888-739998826997206889820499--97778976359753334-67-888
Q 002780 624 FGSLTNLQKLSIIEADS-QVLKELMKLRQ-LRMLSIRPQNGNGKDLCALITNLE--NLETLTVEMTSKEEMLD-LQ-SLS 697 (882)
Q Consensus 624 ~~~l~~L~~L~l~~~~~-~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~-l~-~l~ 697 (882)
++.+++|+.|++..|.. ..+..+..+++ |+.|+++.|.+. .++..+...+ +|+.|++++|.+....+ +. .+.
T Consensus 591 ~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred HCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCC--CCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHC
T ss_conf 247985007987187125035877525114989998499787--476445225567778897708847886432000000
Q ss_pred --CCCCCCCEEEEECC-CCCCCCCCC-CCCCCCEEEEEECCCCCCCCHHHC-------CCCCCCEEEEECCCCCCEEEEC
Q ss_conf --88877437896024-999991003-899941899960278964210102-------7875561584135688837882
Q 002780 698 --SPPQYLQRLHLTGN-MKKLPDWIF-KLKNLIRLGLDLSGLTEEPIRVLQ-------TLPNLLELRFTGAYNYELFHFE 766 (882)
Q Consensus 698 --~~~~~L~~L~l~~~-~~~lp~~~~-~l~~L~~L~L~~~~l~~~~~~~l~-------~l~~L~~L~L~~~~~~~~~~~~ 766 (882)
..+ +|+.|++++| +..+|..+. .+++|+.|+|++|.+...+...+. ++++|+.|+|++|.+. .++..
T Consensus 669 ~~~~~-~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 669 DYKGI-NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp TCCCC-CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred CCCCC-CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCHHH
T ss_conf 13579-76889831996886597887138988999898996885496784555334321487158988899786-65277
Q ss_pred CC--CCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEEEC------CCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCC
Q ss_conf 58--875554667264688501598579765854888603------8986743642224646767899447589998313
Q 002780 767 AG--WFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGP------CPLLMEIPIGIEHLKNLKLLVFAGMVKQVYYMTK 838 (882)
Q Consensus 767 ~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~------c~~l~~ip~~l~~l~~L~~L~l~~~~~~~~~~~~ 838 (882)
+. .+++|+.|++++|.... +|..+..+++|+.|++++ |...+.+|..+..+++|+.|++++|.
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-------- 817 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-------- 817 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC--------
T ss_pred HHHCCCCCCCEEEECCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCC--------
T ss_conf 624427986989908997876-10566159998899887997766563244486888369987889887997--------
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 55656421444628999820661012223446899876
Q 002780 839 DENWGKVTENIPDVLVTFMEAGQLFHYRKDILSSLSPE 876 (882)
Q Consensus 839 ~~~~~~~~~~ip~~~~~~~~l~~l~l~~N~~~~~~p~~ 876 (882)
+ +.+|..+. ++|+.|++++|++...-+..
T Consensus 818 ------L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 818 ------I-RKVDEKLT--PQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp ------C-CBCCSCCC--SSSCEEECCSCTTCEEECGG
T ss_pred ------C-CCCCHHHC--CCCCEEECCCCCCCCCCHHH
T ss_conf ------8-74087662--87788999799888117677
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=263.23 Aligned_cols=384 Identities=15% Similarity=0.089 Sum_probs=190.4
Q ss_pred CCCEEEEEEECCCCCCCC--CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC-CCCCCCCCCCCE
Q ss_conf 898499999645785411--22356631189982379999521111224775322997169999878-623577668818
Q 002780 475 SSKTRRITVQRSIDDGAL--ESIKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYL-PEGVGNLFNLHY 551 (882)
Q Consensus 475 ~~~~r~l~i~~~~~~~~~--~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~l-~~~i~~l~~L~~ 551 (882)
+..++++.+.++...... ....+++|+.|.+.++.. ....+..|.++++|++|++++|.+..+ |..|+.+++|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCC--CCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 88767887888975773754555776674886887736--6439777306010688678798563048522078653788
Q ss_pred EEEECCCCCCCC-CCCCCCCCCCEEECCCCCCC--CCCHHHHCCCCCCEEECCCCCCCCCCC--HHHHH-----------
Q ss_conf 887058873136-01027899959971686453--245431046346725413202457875--01211-----------
Q 002780 552 LSLRNTKVKIIP-TSIGNLLSLETLNMKNTLVR--ELPVEIRNLKKLRYLMVYQYHYTSGSS--ITEEA----------- 615 (882)
Q Consensus 552 L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~n~~~~~~~--~~~~~----------- 615 (882)
|++++|.+..+| ..++++++|++|++++|.+. .+|..+.++++|++|++++|.+..... +....
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEEC
T ss_conf 87037755544511348988779896878852325306867326777788766885310573341212034200243004
Q ss_pred ---HHCCCCCCCCCCCCCCCCCCEEC------------------------------------------------------
Q ss_conf ---00123472357755641461006------------------------------------------------------
Q 002780 616 ---AVAKVRGGFGSLTNLQKLSIIEA------------------------------------------------------ 638 (882)
Q Consensus 616 ---~~~~~~~~~~~l~~L~~L~l~~~------------------------------------------------------ 638 (882)
....++.......+|+.|++.++
T Consensus 189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEEC
T ss_conf 68975325711056760433524678561667788860266565231411110367741026817766665434745012
Q ss_pred ---------------------------CHHHHHHHCCCCCCCEEEEEECCCC---------------------CHH----
Q ss_conf ---------------------------9784997017888739998826997---------------------206----
Q 002780 639 ---------------------------DSQVLKELMKLRQLRMLSIRPQNGN---------------------GKD---- 666 (882)
Q Consensus 639 ---------------------------~~~~~~~l~~l~~L~~L~l~~~~~~---------------------~~~---- 666 (882)
....++.+..+++|+.|+++.+... ...
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~ 348 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVA 348 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHCC
T ss_conf 36655554322235488789877147660443543340117789764666765466788755644544786853100024
Q ss_pred -------------------HHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCC--CCCC-CCCCCCCC
Q ss_conf -------------------8898204999777897635975333467888888774378960249--9999-10038999
Q 002780 667 -------------------LCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNM--KKLP-DWIFKLKN 724 (882)
Q Consensus 667 -------------------~~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~lp-~~~~~l~~ 724 (882)
.+..+..+++|+.|++++|...... ..+...+ +|+.|++++|. +..| ..+..+++
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--ANFMGLE-ELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC--CCCTTCT-TCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCH--HHCCCCC-CCCEEECCCCCCCCCCCHHHHHCCCC
T ss_conf 89888797758736877520122146775548678899530005--5406888-88965898870587537645646213
Q ss_pred CCEEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCCC-EEEECCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEEE
Q ss_conf 4189996027896421010278755615841356888-378825887555466726468850159857976585488860
Q 002780 725 LIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYE-LFHFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIG 803 (882)
Q Consensus 725 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 803 (882)
|+.|++++|.+....+..++.+++|+.|++++|.+.+ ..+..++.+++|+.|++++|......+..+..+++|+.|+++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 78898968978743355534778789898989837985467760457889989898885776486561546468989898
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCEEEEEEE-ECCCCCCCCCCCCCCCCHHHH
Q ss_conf 389867436422246467678994475899983135565642144462899982-066101222344689987677
Q 002780 804 PCPLLMEIPIGIEHLKNLKLLVFAGMVKQVYYMTKDENWGKVTENIPDVLVTFM-EAGQLFHYRKDILSSLSPEYV 878 (882)
Q Consensus 804 ~c~~l~~ip~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~-~l~~l~l~~N~~~~~~p~~~~ 878 (882)
+|......|..+..+++|+.|++++| .+..+|..+..++ +|+.+++++|++.+..+..|+
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N---------------~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~ 566 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFN---------------RIETSKGILQHFPKSLAFFNLTNNSVACICEHQKF 566 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTS---------------CCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHH
T ss_pred CCCCCCCCHHHCCCCCCCCEEECCCC---------------CCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHH
T ss_conf 99578748777068876898889898---------------37666876752102174887628986647764899
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=257.95 Aligned_cols=336 Identities=13% Similarity=0.123 Sum_probs=269.7
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------------------CCCCCC--CCCCCCEEEEECCCCC-CCCCCCCCCCCCCE
Q ss_conf 11122477532299716999987------------------862357--7668818887058873-13601027899959
Q 002780 516 MNASIANFKLIKVLDLEDAPVDY------------------LPEGVG--NLFNLHYLSLRNTKVK-IIPTSIGNLLSLET 574 (882)
Q Consensus 516 ~~~~~~~~~~Lr~L~L~~~~~~~------------------l~~~i~--~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 574 (882)
+|..+.++++|++|+|++|.+.. +|..++ .+++|++|++++|.+. .+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCE
T ss_conf 11887569998789796886788746532233222222445874440255999778987189887527387737999899
Q ss_pred EECCCCC-CC--CCCHHHHCCC-------CCCEEECCCCCCCCCCCHHHHHHHCCCCC--CCCCCCCCCCCCCEECCHHH
Q ss_conf 9716864-53--2454310463-------46725413202457875012110012347--23577556414610069784
Q 002780 575 LNMKNTL-VR--ELPVEIRNLK-------KLRYLMVYQYHYTSGSSITEEAAVAKVRG--GFGSLTNLQKLSIIEADSQV 642 (882)
Q Consensus 575 L~L~~~~-~~--~lp~~i~~l~-------~L~~L~l~~n~~~~~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~ 642 (882)
|++++|. +. .+|..+..++ +|++|++++|.+. .+|. .++++++|+.|++..|....
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~------------~ip~~~~l~~L~~L~~L~Ls~N~l~~ 587 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE------------EFPASASLQKMVKLGLLDCVHNKVRH 587 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC------------BCCCHHHHTTCTTCCEEECTTSCCCB
T ss_pred EECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC------------CCCCHHHHHCCCCCCEEECCCCCCCC
T ss_conf 989689876566461778752330155688319982289477------------61872355158988989897998256
Q ss_pred HHHHCCCCCCCEEEEEECCCCCHHHHHHHCCCCC-CCEEEEEECCCCCCCCCCCCCCCC-CCCCEEEEECCC--CCCCC-
Q ss_conf 9970178887399988269972068898204999-777897635975333467888888-774378960249--99991-
Q 002780 643 LKELMKLRQLRMLSIRPQNGNGKDLCALITNLEN-LETLTVEMTSKEEMLDLQSLSSPP-QYLQRLHLTGNM--KKLPD- 717 (882)
Q Consensus 643 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~l~~l~~~~-~~L~~L~l~~~~--~~lp~- 717 (882)
++.+..+++|+.|+++.|.+. .++..+..+++ |+.|++++|.+.... ..+.... ++|+.|++++|. +.+|.
T Consensus 588 lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp--~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 588 LEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIP--NIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp CCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCC--SCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred CHHHCCCCCCEEEECCCCCCC--CCHHHHHHCCCCCCEEECCCCCCCCCC--HHHHCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 212247985007987187125--035877525114989998499787476--4452255677788977088478864320
Q ss_pred --CCC--CCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCCCEEEECCC-------CCCCCCEEEECCCCCCEE
Q ss_conf --003--899941899960278964210102787556158413568883788258-------875554667264688501
Q 002780 718 --WIF--KLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAG-------WFPKLQKLLLWEFKAVKS 786 (882)
Q Consensus 718 --~~~--~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~ 786 (882)
.+. .+++|+.|++++|.+...+...+..+++|+.|++++|.+.......+. .+++|+.|++++|.. ..
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-~~ 742 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TS 742 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC-CC
T ss_pred HHHHCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCC-CC
T ss_conf 00000135797688983199688659788713898899989899688549678455533432148715898889978-66
Q ss_pred EEECCC--CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 598579--765854888603898674364222464676789944758999831355656421444628999820661012
Q 002780 787 VIIEKG--AMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGMVKQVYYMTKDENWGKVTENIPDVLVTFMEAGQLFH 864 (882)
Q Consensus 787 ~~~~~~--~~~~L~~L~l~~c~~l~~ip~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~l~~l~l 864 (882)
+|..+. .+++|+.|++++|.... +|..+..+++|+.|++++|+ ....|++.+.+|..+..+++|+.|++
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~--------~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR--------DAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB--------CTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CHHHHHHCCCCCCCEEEECCCCCCC-CCHHHHCCCCCCEEECCCCC--------CCCCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 5277624427986989908997876-10566159998899887997--------76656324448688836998788988
Q ss_pred CCCCCCCCCCHHHH
Q ss_conf 22344689987677
Q 002780 865 YRKDILSSLSPEYV 878 (882)
Q Consensus 865 ~~N~~~~~~p~~~~ 878 (882)
++|++ +.+|..+.
T Consensus 814 s~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 814 GSNDI-RKVDEKLT 826 (876)
T ss_dssp CSSCC-CBCCSCCC
T ss_pred CCCCC-CCCCHHHC
T ss_conf 79978-74087662
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=257.02 Aligned_cols=286 Identities=14% Similarity=0.083 Sum_probs=168.7
Q ss_pred EEEEEEE-CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEECCCC
Q ss_conf 3229971-699998786235776688188870588731360102789995997168645324543104634672541320
Q 002780 525 LIKVLDL-EDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQY 603 (882)
Q Consensus 525 ~Lr~L~L-~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~n 603 (882)
.++.+++ ..+.+......+..+++|+.|+++++.+..+| .+..+++|+.|++++|.+..+| .+ .+++|++|++++|
T Consensus 262 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMN 338 (606)
T ss_dssp EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESC
T ss_pred CHHHEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHH-HCCCCCCCCEEECCCCCCCCCC-CC-CCCCCCEEECCCC
T ss_conf 4745012366555543222354887898771476604435-4334011778976466676546-67-8875564454478
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEECCHH----HHHHHCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCE
Q ss_conf 24578750121100123472357755641461006978----49970178887399988269972068898204999777
Q 002780 604 HYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQ----VLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLET 679 (882)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 679 (882)
... .. ..+..+++|+.|++.++... .+..+..+++|+.|+++.|.... .+..+..+++|+.
T Consensus 339 ~~~-----------~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 339 KGS-----------IS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQH 403 (606)
T ss_dssp SSC-----------EE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE--ECCCCTTCTTCCE
T ss_pred CCC-----------CC--HHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC--CHHHCCCCCCCCE
T ss_conf 685-----------31--00024898887977587368775201221467755486788995300--0554068888896
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCEEEEEECCCCC-CCCHHHCCCCCCCEEEEEC
Q ss_conf 897635975333467888888774378960249--9999100389994189996027896-4210102787556158413
Q 002780 680 LTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNM--KKLPDWIFKLKNLIRLGLDLSGLTE-EPIRVLQTLPNLLELRFTG 756 (882)
Q Consensus 680 L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~ 756 (882)
|++++|......+...+...+ +|+.|++++|. ...|..+..+++|+.|++++|.+.+ ..+..++.+++|+.|++++
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLE-KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EECCCCCCCCCCCHHHHHCCC-CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCC
T ss_conf 589887058753764564621-3788989689787433555347787898989898379854677604578899898988
Q ss_pred CCCCCEEEECCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CCCEEEEECCH
Q ss_conf 568883788258875554667264688501598579765854888603898674364222464-67678994475
Q 002780 757 AYNYELFHFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEHLK-NLKLLVFAGMV 830 (882)
Q Consensus 757 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~l~~l~-~L~~L~l~~~~ 830 (882)
|.+.+..+..+..+++|+.|++++|......|..+..+++|+.|++++|... .+|..+..++ +|+.|++++||
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCC
T ss_conf 8577648656154646898989899578748777068876898889898376-6687675210217488762898
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=256.47 Aligned_cols=337 Identities=13% Similarity=0.103 Sum_probs=261.6
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------------------CCCCCC--CCCCCCEEEEECCCCC-CCCCCCCCCCCCCE
Q ss_conf 11122477532299716999987------------------862357--7668818887058873-13601027899959
Q 002780 516 MNASIANFKLIKVLDLEDAPVDY------------------LPEGVG--NLFNLHYLSLRNTKVK-IIPTSIGNLLSLET 574 (882)
Q Consensus 516 ~~~~~~~~~~Lr~L~L~~~~~~~------------------l~~~i~--~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 574 (882)
++..+.++++|++|+|++|.+.. +|..++ .+++|++|++++|.+. .+|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCE
T ss_conf 78777256478789886882366423221222221001024863220044687888980488577628388834999788
Q ss_pred EECCCCC-CC--CCCHHHHCC------CCCCEEECCCCCCCCCCCHHHHHHHCCCCC--CCCCCCCCCCCCCEECCHH-H
Q ss_conf 9716864-53--245431046------346725413202457875012110012347--2357755641461006978-4
Q 002780 575 LNMKNTL-VR--ELPVEIRNL------KKLRYLMVYQYHYTSGSSITEEAAVAKVRG--GFGSLTNLQKLSIIEADSQ-V 642 (882)
Q Consensus 575 L~L~~~~-~~--~lp~~i~~l------~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~-~ 642 (882)
|++++|. +. .+|..+..+ ++|++|++++|.+. .+|. .++++++|+.|++..+... .
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~------------~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK------------TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS------------SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred EECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC------------CCCCHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 97847988766533578875430465788888989799377------------667655542578889896908807051
Q ss_pred HHHHCCCCCCCEEEEEECCCCCHHHHHHHCCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCC
Q ss_conf 9970178887399988269972068898204999-777897635975333467888888774378960249--9999100
Q 002780 643 LKELMKLRQLRMLSIRPQNGNGKDLCALITNLEN-LETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNM--KKLPDWI 719 (882)
Q Consensus 643 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~lp~~~ 719 (882)
++.+..+++|+.|+++.|... .++..+..+++ |+.|++++|.+......-.....+ +|+.|++++|. +..|.++
T Consensus 346 ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 346 LPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS-VMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp CCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSS-CEEEEECCSSCTTTTTTCSS
T ss_pred HHHHCCCCCCCEEECCCCCCC--CCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHCCCC-CCCEEECCCCCCCCCCHHHH
T ss_conf 666478898898989899403--033756510236868985298275446655333457-66889774885788652442
Q ss_pred C-------CCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCCCEEEECCC-------CCCCCCEEEECCCCCCE
Q ss_conf 3-------899941899960278964210102787556158413568883788258-------87555466726468850
Q 002780 720 F-------KLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAG-------WFPKLQKLLLWEFKAVK 785 (882)
Q Consensus 720 ~-------~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~ 785 (882)
. .+++|+.|++++|.+...+...+..+++|+.|++++|.+.......+. .+++|+.|++++|...
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 501 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT- 501 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-
T ss_conf 0022011258988889772796686787887158988989897997887397884044001221477338989699388-
Q ss_pred EEEECCC--CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 1598579--76585488860389867436422246467678994475899983135565642144462899982066101
Q 002780 786 SVIIEKG--AMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGMVKQVYYMTKDENWGKVTENIPDVLVTFMEAGQLF 863 (882)
Q Consensus 786 ~~~~~~~--~~~~L~~L~l~~c~~l~~ip~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~l~~l~ 863 (882)
.+|..+. .+++|+.|++++|.... +|..+..+++|+.|++++|. ..+.|++.+.+|..+..+++|+.|+
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~--------~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR--------DAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB--------CTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred CCCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCC--------CCCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf 16854534458876989898998877-68235308887878898886--------6566731212737785699878898
Q ss_pred CCCCCCCCCCCHHHH
Q ss_conf 222344689987677
Q 002780 864 HYRKDILSSLSPEYV 878 (882)
Q Consensus 864 l~~N~~~~~~p~~~~ 878 (882)
+++|.+ +.+|....
T Consensus 573 Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 573 IGSNDI-RKVNEKIT 586 (636)
T ss_dssp CCSSCC-CBCCSCCC
T ss_pred CCCCCC-CCCCHHHH
T ss_conf 989947-70597683
Done!