Query 002781
Match_columns 882
No_of_seqs 6 out of 8
Neff 1.8
Searched_HMMs 29240
Date Tue Mar 26 17:21:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002781.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1497-1501//hhsearch_pdb/002781hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y9y_A Imitation switch protei 1.0 1 1 13.2 -0.8 23 731-753 256-278 (374)
2 1ofc_X ISWI protein; nuclear p 1.0 1 1 12.2 -0.9 23 731-753 240-262 (304)
3 4am6_A Actin-like protein ARP8 1.0 1 1 11.9 -1.9 51 569-623 330-390 (655)
4 3kh0_A Ralgds, ralgef, RAL gua 1.0 1 1 11.8 0.3 85 645-749 17-109 (140)
5 2qkw_A Avirulence protein; thr 1.0 1 1 10.9 -1.9 33 270-302 43-75 (164)
6 1ef5_A RGL; RAS-binding domain 1.0 1 1 10.9 1.0 23 726-748 79-101 (103)
7 3abq_B Ethanolamine ammonia-ly 1.0 1 1 10.8 -2.3 28 567-594 70-97 (306)
8 2lbo_A Microneme protein 3; ap 1.0 1 1 10.7 1.3 10 416-425 63-72 (123)
9 1lfd_A Ralgds; RAL, effector i 1.0 1 1 10.6 0.3 22 726-747 64-85 (87)
10 1rax_A Protein (RA-domain of R 1.0 1 1 10.5 0.3 21 727-747 90-110 (115)
No 1
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=1.00 E-value=1 Score=13.17 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44301223555453331011232
Q 002781 731 NTQAQIQKSPSFDLDLRIEARTE 753 (882)
Q Consensus 731 ni~~qmrKsPSFd~dLriEaRte 753 (882)
.|+..||.+|-|-||.-|-+|+.
T Consensus 256 ~Ir~~Ir~~p~FrFDwF~kSRT~ 278 (374)
T 2y9y_A 256 LVRDEIRDCPLFELDFYFRSRTP 278 (374)
T ss_dssp HHHHHHHHCSGGGSCHHHHTCCH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCH
T ss_conf 99999984942221288734999
No 2
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=1.00 E-value=1 Score=12.15 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44301223555453331011232
Q 002781 731 NTQAQIQKSPSFDLDLRIEARTE 753 (882)
Q Consensus 731 ni~~qmrKsPSFd~dLriEaRte 753 (882)
.|+..||.+|-|-||.-+-+||-
T Consensus 240 ~Ir~~Ir~~p~FrFDwf~kSRTp 262 (304)
T 1ofc_X 240 ELRAAIRASPQFRFDWFIKSRTA 262 (304)
T ss_dssp HHHHHHHHCGGGTTCHHHHTCCH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCH
T ss_conf 99999872930444589854899
No 3
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=1.00 E-value=1 Score=11.94 Aligned_cols=51 Identities=27% Similarity=0.255 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHH-------HHCC---CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00011489976410354356787454-------3048---6448743112237889754566663
Q 002781 569 SEEGQVFEEAEDKTKTSYGNENSKDA-------RENG---EQCTPPVEQEVSLTKAPLSLFQPQD 623 (882)
Q Consensus 569 ~~E~qivEei~eKte~s~avgn~~ee-------rq~g---Eq~t~~veae~~lp~aPaslfQsQd 623 (882)
..+..+|+.||||.-|-. .-+... |..+ +..+.-+-.|.++ ||..||+|.=
T Consensus 330 ~~e~eiVrdIKEk~CyVs--~~Di~~q~~~f~~r~P~~~~~ky~i~vgdErfl--aPe~lF~Pei 390 (655)
T 4am6_A 330 KHGWLLAERLKKNFTTFQ--DADVAVQLYNFMNRSPNQPTEKYEFKLFDEVML--APLALFFPQI 390 (655)
T ss_dssp HHHHHHHHHHHHHHCCCC--GGGCCSEEEEEEECCSSSCEEEEEEEESSHHHH--HHHGGGSTHH
T ss_pred CCHHHHHHHHHHHEEEEC--CCCHHHHHHCCEECCCCCCCCCEEEEECCEEHH--CCHHCCCHHH
T ss_conf 336999999988659970--654311321123216888886239998871000--7341079545
No 4
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=1.00 E-value=1 Score=11.85 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=48.8
Q ss_pred CCCCCCCCEEEECCCCCCCC----HHHHCC----HHHHHHHHCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCHHHHH
Q ss_conf 34466564587206994100----021002----1345653003898311101353104400130013455677357773
Q 002781 645 LKPEINGEFLVTDGSPFDSK----KSMAET----LTPVAESAIEKPDQDISQHTAETMMAPAEANTQVNNVSEQNADAQE 716 (882)
Q Consensus 645 Lkpe~~~EFlv~k~S~~da~----~~~~~t----l~~~vEla~~KP~qe~s~~~~~t~mA~ae~~tet~~~p~g~~eaQE 716 (882)
+-.....+|.++++|-++.. ++|.=| ...++.-||+|-..+...--. -.-+-+.|.|. |
T Consensus 17 ~~~qq~~d~~IIRVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~---------y~LvQ~Lp~~k-E--- 83 (140)
T 3kh0_A 17 QGNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPED---------YELLQILSDDR-K--- 83 (140)
T ss_dssp CCSCSSSCEEEEEEEEECSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGG---------EEEEEEEETTE-E---
T ss_pred CCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHC---------EEEEEECCCCC-E---
T ss_conf 5578899768999999748994888888641665579999999982889776103---------38999858997-6---
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 302420234777654430122355545333101
Q 002781 717 SLGRLSTESNSNNSNTQAQIQKSPSFDLDLRIE 749 (882)
Q Consensus 717 svgr~StESn~~nsni~~qmrKsPSFd~dLriE 749 (882)
| --|+|.|.-.-|-.|..|||-||--
T Consensus 84 ----L---~IPd~ANVFYAM~~sa~~dFvLR~k 109 (140)
T 3kh0_A 84 ----L---KIPENANVFYAMNSTANYDFVLKKR 109 (140)
T ss_dssp ----E---ECCTTCBHHHHSCTTSCCEEEEEEC
T ss_pred ----E---ECCCCCCEEEEECCCCCCCEEEEEC
T ss_conf ----8---2589873588865788854798554
No 5
>2qkw_A Avirulence protein; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Pseudomonas syringae} SCOP: a.8.8.1 PDB: 1r5e_A
Probab=1.00 E-value=1 Score=10.93 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=25.0
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 323489999935564204899986787753333
Q 002781 270 LQEFGDSKFDQPELASIHVDPPTQDSNNSLHIH 302 (882)
Q Consensus 270 ~q~~~d~kFDQ~El~~ihadps~qds~nsl~~s 302 (882)
+-+..++--+||+|+..-+-++..++.|.|.-.
T Consensus 43 L~eaagLpr~qh~Fi~n~ap~sLR~~~n~L~r~ 75 (164)
T 2qkw_A 43 LAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSH 75 (164)
T ss_dssp HHHHCCCCHHHHTTTSSSCCSSGGGHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 888619987778886168988999998799998
No 6
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=1.00 E-value=1 Score=10.90 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77765443012235554533310
Q 002781 726 NSNNSNTQAQIQKSPSFDLDLRI 748 (882)
Q Consensus 726 n~~nsni~~qmrKsPSFd~dLri 748 (882)
-|+|.|.-.-|-.++.|||-||-
T Consensus 79 iPd~aNVFYAm~~~~~~~F~LR~ 101 (103)
T 1ef5_A 79 IPDSANVFYAMNSQVNFDFILRK 101 (103)
T ss_dssp SSCCCCTTTTTCCCSCEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCEEEEE
T ss_conf 58976268997587773379731
No 7
>3abq_B Ethanolamine ammonia-lyase light chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_B* 3abr_B* 3abs_B* 3any_B* 3ao0_B*
Probab=1.00 E-value=1 Score=10.79 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=15.9
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 3100011489976410354356787454
Q 002781 567 EASEEGQVFEEAEDKTKTSYGNENSKDA 594 (882)
Q Consensus 567 E~~~E~qivEei~eKte~s~avgn~~ee 594 (882)
..|..+-.+...+..|-+-.|+|..-..
T Consensus 70 ~~p~~~~~w~~Lr~~T~ARIglGRaG~s 97 (306)
T 3abq_B 70 ENPHRADVLTELRRSTVARVCTGRAGPR 97 (306)
T ss_dssp SSCSCHHHHHHHHHTCSSCCSCCCBTTB
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 9968988999998458500761576888
No 8
>2lbo_A Microneme protein 3; apicomplexan, protozoa, cell adhesion, MICR microneme adhesive repeat; NMR {Eimeria tenella}
Probab=1.00 E-value=1 Score=10.66 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=3.3
Q ss_pred CCCCCCCCCC
Q ss_conf 1224579998
Q 002781 416 VTCMDESQNP 425 (882)
Q Consensus 416 ~~~m~~S~ns 425 (882)
+.||++--|.
T Consensus 63 ~~CvDdCGn~ 72 (123)
T 2lbo_A 63 DGCVDDCGSM 72 (123)
T ss_dssp TTCCCSSSSC
T ss_pred CCCCCCCCCC
T ss_conf 7321157871
No 9
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=1.00 E-value=1 Score=10.57 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7776544301223555453331
Q 002781 726 NSNNSNTQAQIQKSPSFDLDLR 747 (882)
Q Consensus 726 n~~nsni~~qmrKsPSFd~dLr 747 (882)
-|+|.|.-..|-.+..|||-||
T Consensus 64 iPd~aNvfYAm~~~~~~~FvLR 85 (87)
T 1lfd_A 64 IPENANVFYAMNSAANYDFILK 85 (87)
T ss_dssp CCTTSBHHHHSCTTSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCCEEEE
T ss_conf 5888617899757777336872
No 10
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=1.00 E-value=1 Score=10.52 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 776544301223555453331
Q 002781 727 SNNSNTQAQIQKSPSFDLDLR 747 (882)
Q Consensus 727 ~~nsni~~qmrKsPSFd~dLr 747 (882)
|+|.|.-.-|-.+..|||-||
T Consensus 90 Pd~aNVFYAm~~s~~~dFvLR 110 (115)
T 1rax_A 90 PENANVFYAMNSTANYDFVLK 110 (115)
T ss_dssp CTTSCHHHHSCTTSCCEEEEE
T ss_pred CCCCCEEEEECCCCCCCEEEE
T ss_conf 898626899757777327975
Done!