Query 002781
Match_columns 882
No_of_seqs 6 out of 8
Neff 1.8
Searched_HMMs 13730
Date Tue Mar 26 17:26:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002781.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1497-1501//hhsearch_scop/002781hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i9wa2 g.74.1.1 (A:1-39) Hypo 20.8 11 0.00081 14.1 0.3 10 757-766 20-29 (39)
2 d2qkwa1 a.8.8.1 (A:29-129) Avi 15.3 6.6 0.00048 15.3 -1.9 33 270-302 15-47 (101)
3 d1ofcx2 a.4.1.13 (X:851-978) S 9.4 21 0.0015 12.5 -0.9 22 732-753 78-99 (128)
4 d1hywa_ d.186.1.1 (A:) Head-to 8.6 43 0.0031 10.9 0.6 20 34-53 26-45 (58)
5 d2i5nm1 f.26.1.1 (M:1-323) M ( 6.1 57 0.0041 10.2 0.9 32 785-819 2-36 (323)
6 d1p8ba_ g.3.6.4 (A:) Pab1, sub 5.9 58 0.0042 10.1 0.8 19 780-798 7-26 (37)
7 d1ef5a_ d.15.1.5 (A:) Rgl {Mou 5.7 60 0.0044 10.0 1.0 57 672-748 30-86 (88)
8 d2o3la1 a.69.4.1 (A:14-95) Hyp 5.7 53 0.0038 10.3 -0.3 15 459-473 65-79 (82)
9 d2imja1 d.17.4.23 (A:5-159) Hy 5.1 54 0.0039 10.3 -0.5 29 830-858 7-35 (155)
10 d1g5ta_ c.37.1.11 (A:) ATP:cor 4.3 76 0.0055 9.5 -0.2 10 371-380 8-17 (157)
No 1
>d2i9wa2 g.74.1.1 (A:1-39) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=20.82 E-value=11 Score=14.09 Aligned_cols=10 Identities=60% Similarity=0.943 Sum_probs=6.2
Q ss_pred CCCCEEECCC
Q ss_conf 9960330456
Q 002781 757 RTPLLYHDKT 766 (882)
Q Consensus 757 qTPLLy~DKT 766 (882)
-|||||+|--
T Consensus 20 s~pllyqdcc 29 (39)
T d2i9wa2 20 STPLLYQDCC 29 (39)
T ss_dssp SCCCBGGGTT
T ss_pred CCHHHHHHHC
T ss_conf 3206777612
No 2
>d2qkwa1 a.8.8.1 (A:29-129) Avirulence protein AvrPto {Pseudomonas syringae [TaxId: 317]}
Probab=15.29 E-value=6.6 Score=15.33 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=26.4
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 323489999935564204899986787753333
Q 002781 270 LQEFGDSKFDQPELASIHVDPPTQDSNNSLHIH 302 (882)
Q Consensus 270 ~q~~~d~kFDQ~El~~ihadps~qds~nsl~~s 302 (882)
+-++.++--|||||++-.+-+|..++.|.|-.|
T Consensus 15 laesaglprdqhefissqap~slr~~ynnlysh 47 (101)
T d2qkwa1 15 LAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSH 47 (101)
T ss_dssp HHHHCCCCHHHHTTTSSSCCSSGGGHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 998549982077887500829999988668887
No 3
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=9.37 E-value=21 Score=12.52 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4301223555453331011232
Q 002781 732 TQAQIQKSPSFDLDLRIEARTE 753 (882)
Q Consensus 732 i~~qmrKsPSFd~dLriEaRte 753 (882)
|+..||.+|-|-||.-+-+|+.
T Consensus 78 ir~~Ir~~p~FrFDwf~kSRt~ 99 (128)
T d1ofcx2 78 LRAAIRASPQFRFDWFIKSRTA 99 (128)
T ss_dssp HHHHHHHCGGGTTCHHHHTCCH
T ss_pred HHHHHHHCCCHHHHHHHCCCCH
T ss_conf 9999974953120257616999
No 4
>d1hywa_ d.186.1.1 (A:) Head-to-tail joining protein W, gpW {Bacteriophage lambda [TaxId: 10710]}
Probab=8.58 E-value=43 Score=10.86 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCCCCHHHHCC
Q ss_conf 01375200123331122012
Q 002781 34 GQADGKEVENHNASLAEVKD 53 (882)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~ 53 (882)
-|-||..|+-+.||+.+.+.
T Consensus 26 vqKDGr~Veytaasi~eL~~ 45 (58)
T d1hywa_ 26 VQKDGRRVEFTATSVSDLKK 45 (58)
T ss_dssp EECSSCEEEECTTTHHHHHH
T ss_pred EECCCCEEEEECCCHHHHHH
T ss_conf 72389288874357999999
No 5
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=6.13 E-value=57 Score=10.17 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=19.3
Q ss_pred CCCC---CCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 2222---1112322343235775117643246886544
Q 002781 785 RAQD---KLQCHAMPVEEKVVRMERNDSDKLKTPFLGF 819 (882)
Q Consensus 785 ~~~~---~~q~~a~PVEEk~i~lersDSeKsRtPfLgf 819 (882)
+||. |+|++. | +.-+.+.+++.+....|+.+.
T Consensus 2 eyqniftqvqv~g-p--~~~~~~~~~~~~r~~~~~~~~ 36 (323)
T d2i5nm1 2 DYQTIYTQIQARG-P--HITVSGEWGDNDRVGKPFYSY 36 (323)
T ss_dssp CGGGTSCSSBEEC-C--CCCCCCSSCGGGEECCCEECT
T ss_pred CCCCCEEEEEECC-C--CCCCCCCCCCCCCCCCCCHHH
T ss_conf 7442204322058-9--888899888443247751446
No 6
>d1p8ba_ g.3.6.4 (A:) Pab1, subunit b {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=5.93 E-value=58 Score=10.11 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=13.3
Q ss_pred CCCCCCCCC-CCCCCCCCCC
Q ss_conf 884122222-1112322343
Q 002781 780 GSPIARAQD-KLQCHAMPVE 798 (882)
Q Consensus 780 ~sP~~~~~~-~~q~~a~PVE 798 (882)
-||.-.++| +-.|||||+-
T Consensus 7 CSPFemPPCgs~dCRCiP~g 26 (37)
T d1p8ba_ 7 CSPFEMPPCGTSACRCIPVG 26 (37)
T ss_dssp ECTTCSSGGGCSSSEEECCS
T ss_pred CCCCCCCCCCCCCCEEEEEE
T ss_conf 16663698899871688878
No 7
>d1ef5a_ d.15.1.5 (A:) Rgl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.71 E-value=60 Score=10.03 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=34.2
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34565300389831110135310440013001345567735777330242023477765443012235554533310
Q 002781 672 TPVAESAIEKPDQDISQHTAETMMAPAEANTQVNNVSEQNADAQESLGRLSTESNSNNSNTQAQIQKSPSFDLDLRI 748 (882)
Q Consensus 672 ~~~vEla~~KP~qe~s~~~~~t~mA~ae~~tet~~~p~g~~eaQEsvgr~StESn~~nsni~~qmrKsPSFd~dLri 748 (882)
..++.-||.|-..+.... +--.-+-+.|.+. -+ --|+|-|.-..|.-++.|||-||-
T Consensus 30 P~VI~rAl~Khnl~~~~~---------~~Y~L~QvLp~dk--------El---~iPd~aNvfYAm~~s~n~dF~LRk 86 (88)
T d1ef5a_ 30 PAVIQRAMSKHNLESDPA---------EEYELVQVISEDK--------EL---VIPDSANVFYAMNSQVNFDFILRK 86 (88)
T ss_dssp HHHHHHHTTTTTCCCCSS---------SSEEEEEECSSSC--------CE---ESSCCCCTTTTTCCCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCH---------HCEEEEEECCCCC--------EE---ECCCCCCEEEEECCCCCCCEEEEC
T ss_conf 799999999838997741---------0418999858997--------69---638997268996688775568741
No 8
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus cereus [TaxId: 1396]}
Probab=5.71 E-value=53 Score=10.34 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=6.5
Q ss_pred CCCCHHHHHHHHCCC
Q ss_conf 874301365431013
Q 002781 459 DCLTHSCDESVKESK 473 (882)
Q Consensus 459 ~~~tq~~des~~ESk 473 (882)
.+|-.|||++++++|
T Consensus 65 ~D~~~f~deli~~~k 79 (82)
T d2o3la1 65 EDVASFADELVANAK 79 (82)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCC
T ss_conf 899999999997565
No 9
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=5.14 E-value=54 Score=10.29 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=18.4
Q ss_pred ECCCCCCCCHHHCCCCHHHCCCCCHHHHC
Q ss_conf 27765465011012020101521011200
Q 002781 830 VTPQVHGNNAAAKREDKESSNLHAKEVTA 858 (882)
Q Consensus 830 Vt~~~q~n~aA~KKa~ke~~Ns~tkeV~s 858 (882)
++|-...+-++--++++|.||++.++.-+
T Consensus 7 lPPFt~etA~~KVr~AEdaWNsrdP~~Va 35 (155)
T d2imja1 7 LPPFTRESAIEKIRLAEDGWNSRDPERVS 35 (155)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCHHEE
T ss_conf 88889899999999999866358800336
No 10
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=4.32 E-value=76 Score=9.48 Aligned_cols=10 Identities=50% Similarity=0.737 Sum_probs=6.6
Q ss_pred CCCCCCCCCE
Q ss_conf 2487767510
Q 002781 371 ETGNAKGEKS 380 (882)
Q Consensus 371 EvgN~~~kts 380 (882)
-+||++||||
T Consensus 8 ytG~GKGKTT 17 (157)
T d1g5ta_ 8 FTGNGKGKTT 17 (157)
T ss_dssp EESSSSCHHH
T ss_pred EECCCCCCHH
T ss_conf 9579997089
Done!