BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002782
(882 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 199 bits (507), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 168/628 (26%), Positives = 279/628 (44%), Gaps = 76/628 (12%)
Query: 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREI 84
+ S DG IA A + + N + T+ G S ++ +A SPD + + S+ + +
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 81
Query: 85 RVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
++W+ + + L++ GH G+A P G +A+A D+ V +W+ +G GH
Sbjct: 82 KLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLTGHS 139
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLI 204
V + F PD + S SDD TV++W+ + + TL H S V +A + DG T+
Sbjct: 140 SSVWGVAFSPD--GQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIA 196
Query: 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264
SA DK V LW+ + V V P G QTI
Sbjct: 197 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG------------QTI-------- 236
Query: 265 IHFITVGERGIVRMWNADSACLYE---QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC 321
+ + V++WN + L SS ++F P Q +
Sbjct: 237 ---ASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFR--------------PDGQTIAS 279
Query: 322 VTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 381
+ D+ TV++ + +L+ + L G++ + + F + Q +A A++ + V+++
Sbjct: 280 ASDDK------TVKLWNRNGQLL--QTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLW 330
Query: 382 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 441
+ + L GHS V + A S I + S D +V+LW+ + + TGH
Sbjct: 331 NRNGQHL-QTLTGHSSSVWGV---AFSPDGQTIASASDDKTVKLWNRNGQLLQTL-TGHS 385
Query: 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501
+V VAFS Q + S S D T+K+W+ +G + + H + +A
Sbjct: 386 SSVRGVAFSPDGQT-IASASDDKTVKLWNRNG-----------QLLQTLTGHSSSVWGVA 433
Query: 502 VAPNDSLVCTGSQDRTACVW-RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 560
+P+D + + S D+T +W R L+ +T GH + V FSP Q + +AS DKT+
Sbjct: 434 FSPDDQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTV 491
Query: 561 KIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE 620
K+W+ +G L+T GH+SSV +F G I S D VKLW R G+ + T H
Sbjct: 492 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 549
Query: 621 DKIWALAVGKKTEMFATGGSDALVNLWH 648
+W +A + A+ SD V LW+
Sbjct: 550 SSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 157/597 (26%), Positives = 269/597 (45%), Gaps = 70/597 (11%)
Query: 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
++ +E S ++ +A SPD + + S+ + +++W+ + + L++ GH G+A P
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSP 67
Query: 113 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
G +A+A D+ V +W+ +G GH V + F PD + S SDD TV++
Sbjct: 68 DGQTIASASDDKTVKLWNRNGQLL-QTLTGHSSSVRGVAFSPD--GQTIASASDDKTVKL 124
Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232
W+ + + TL H S V +A + DG T+ SA DK V LW+ + V
Sbjct: 125 WNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 183
Query: 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292
V P G + S+ + +T+K R+ ++ G VR
Sbjct: 184 WGVAFSPDG---QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG-------------- 226
Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
++F P Q + + D+ TV++ + +L+ + L G+
Sbjct: 227 ---VAFS--------------PDGQTIASASDDK------TVKLWNRNGQLL--QTLTGH 261
Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412
+ + + F + Q +A A++ + V++++ + L GHS V + A S
Sbjct: 262 SSSVNGVAFR-PDGQTIASASDDKTVKLWNRNGQLL-QTLTGHSSSVWGV---AFSPDGQ 316
Query: 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472
I + S D +V+LW+ + + TGH +V VAFS Q + S S D T+K+W+ +
Sbjct: 317 TIASASDDKTVKLWNRNGQHLQTL-TGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNRN 374
Query: 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW-RLPDLVSVVT 531
G + + H + +A +P+ + + S D+T +W R L+ +T
Sbjct: 375 G-----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 423
Query: 532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 591
GH +W V FSP DQ + +AS DKT+K+W+ +G L+T GH+SSV +F G
Sbjct: 424 --GHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 480
Query: 592 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
I S D VKLW R G+ + T H + +A + A+ D V LW+
Sbjct: 481 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW-RLPDLVSVVTFRGHKRGIW 540
M +K + + AH + +A +P+ + + S D+T +W R L+ +T GH +W
Sbjct: 4 MGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVW 61
Query: 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600
V FSP Q + +AS DKT+K+W+ +G L+T GH+SSV +F G I S D
Sbjct: 62 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 601 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
VKLW R G+ + T H +W +A + A+ D V LW+
Sbjct: 121 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 115 bits (289), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 21/244 (8%)
Query: 362 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421
L ++Q + ++++D +++ C +L GH+ VLCL + +I+TGS D+
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL-----QYDERVIITGSSDS 193
Query: 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481
+VR+WD + + H AV + F+ + +V+ S D +I VW D P
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM---MVTCSKDRSIAVW-------DMASP 243
Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541
++ + V+ H +N V +D + + S DRT VW V T GHKRGI
Sbjct: 244 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 301
Query: 542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 601
+++ D++V++ S D TI++W I G+CL+ EGH V F + +IVS DG
Sbjct: 302 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGK 357
Query: 602 VKLW 605
+K+W
Sbjct: 358 IKVW 361
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 121/237 (51%), Gaps = 24/237 (10%)
Query: 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473
IV+G +DN++++WD + C + TGH G+V + + +++ +++GSSD T++VW +
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV---IITGSSDSTVRVWDVN- 201
Query: 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 533
+ + + +AV L + N+ ++ T S+DR+ VW + + R
Sbjct: 202 -TGEMLNTLIHHCEAV----------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 250
Query: 534 ---GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
GH+ + V+F D+ +++ASGD+TIK+W+ S ++T GH + A R
Sbjct: 251 VLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRD 306
Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
+VS +D ++LW + G C+ + HE+ + + K +G D + +W
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGKIKVW 361
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 32/221 (14%)
Query: 10 YGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDL---SNASIKSTIEGGSDTITAL 66
+ CE VL + G +V C+ SI + D+ ++ +++ + G + +
Sbjct: 211 HHCEAVLHLRFNNGMMV--------TCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 262
Query: 67 ALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG-ADRK 125
DDK + S+ R I+VW+ ST + +R+ GH G+AC L +G +D
Sbjct: 263 DF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR---GIACLQYRDRLVVSGSSDNT 317
Query: 126 VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-------- 177
+ +WD++ G C +GH+ +V I F D + SG+ D ++VWDL+A
Sbjct: 318 IRLWDIECGACLRVLEGHEELVRCIRF----DNKRIVSGAYDGKIKVWDLVAALDPRAPA 373
Query: 178 -KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217
C+ TL +H RV + D ++S+ D + +WD
Sbjct: 374 GTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF 412
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/324 (22%), Positives = 126/324 (38%), Gaps = 56/324 (17%)
Query: 199 DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258
D ++S RD + +WD CK I G Y+++ I
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECK-------------RILTGHTGSVLCLQYDERVI-- 186
Query: 259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV-LPSNQ 317
IT VR+W+ ++ EM ++ A + L N
Sbjct: 187 ---------ITGSSDSTVRVWDVNTG--------------EMLNTLIHHCEAVLHLRFNN 223
Query: 318 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 377
G++ + + + + P ++ L + LVG+ + + F +++Y+ A+
Sbjct: 224 GMMVTCSKDRSIAVWDMASP---TDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRT 277
Query: 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 437
++V++ S+ L GH + CL L+V+GS DN++RLWD E C+ V
Sbjct: 278 IKVWNTSTCEFVRTLNGHKRGIACL-----QYRDRLVVSGSSDNTIRLWDIECGACLRVL 332
Query: 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 497
GH V + F K +VSG+ D IKVW D L + +V G+
Sbjct: 333 EGHEELVRCIRFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR-- 387
Query: 498 NSLAVAPNDSLVCTGSQDRTACVW 521
+ ++ + + S D T +W
Sbjct: 388 -VFRLQFDEFQIVSSSHDDTILIW 410
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 13/194 (6%)
Query: 40 ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK 99
+I I D + K + G + ++ L L D++++ + +RVWD++T + L +
Sbjct: 153 NTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI 210
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG---FCTHYFKGHKGVVSSILFHPDT 156
H + + + G++ T DR + VWD+ GH+ V+ + D
Sbjct: 211 HHCEAVLHL--RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV----DF 264
Query: 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216
D + S S D T++VW+ + V TL+ H + + ++S D + LWD
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWD 322
Query: 217 LRDYSCKLTVPTYE 230
+ +C + +E
Sbjct: 323 IECGACLRVLEGHE 336
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
Query: 68 LSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVL 127
L DD+ + S I++WD +TL+C R GH G + + ++ T +D V
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL--QYDERVIITGSSDSTVR 196
Query: 128 VWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH 187
VWDV+ G + H V + F + ++ + S D ++ VWD +A TL +
Sbjct: 197 VWDVNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWD-MASPTDITLRRV 251
Query: 188 F--SRVTSMAITSDGSTLISAGRDKVVNLWD 216
R + D ++SA D+ + +W+
Sbjct: 252 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWN 282
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 145/639 (22%), Positives = 242/639 (37%), Gaps = 82/639 (12%)
Query: 12 CEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPD 71
CEP + Y L +G E IN + N S + + +D + S D
Sbjct: 576 CEPETSEVYRQAKLQAKQEGD-TGRLYLEWINKKTIKNLS-RLVVRPHTDAVYHACFSQD 633
Query: 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131
+ + S G + ++V+ T + L K H+ + A +AT AD+KV +WD
Sbjct: 634 GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 693
Query: 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV 191
G H + H V+ F ++ LL +GS+D +++WDL K+C T+ H + V
Sbjct: 694 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 753
Query: 192 TSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY----------EMVEAVCAIPPG 241
+ D L S D + LWD+R + + ++ E VE +
Sbjct: 754 NHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 813
Query: 242 SA---------------FDSFLSSY-------NQQTIKKKRRSLEIHFITVG-ERGIVRM 278
SA FD S + TI+ S H + + V +
Sbjct: 814 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 873
Query: 279 WNADSACLYEQKSSDVTISFEMDDSKRGFTA----ATVLPSNQGLLCVTADQQLLLYTTV 334
WN DS K +D RG + P L + DQ + ++ T
Sbjct: 874 WNIDS----RLKVADC----------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Query: 335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG 394
+V K ++L + +D+ F E LAV NI +Q+ + Y+
Sbjct: 920 KVC-KNSAIVLKQE--------IDVVFQENETMVLAV-DNIRGLQLIAGKTGQIDYLPEA 969
Query: 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454
+ C LS + G +D ++++ + + G GH AV + F+ +
Sbjct: 970 Q------VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1023
Query: 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514
L+S S D I+VW++ + AH + + + DS + + S
Sbjct: 1024 T-LISSSEDSVIQVWNW-----------QTGDYVFLQAHQETVKDFRLL-QDSRLLSWSF 1070
Query: 515 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574
D T VW + F H+ + S S + S DKT KIWS S L
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1130
Query: 575 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
+GH V ++F G + + +G +++W V G+ +
Sbjct: 1131 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 128/574 (22%), Positives = 227/574 (39%), Gaps = 109/574 (18%)
Query: 105 AIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS 163
A+ AC G +A+ GAD+ + V+ + G K H+ V F +D S + +
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF--SSDDSYIAT 681
Query: 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA--GRDKVVNLWDLRDYS 221
S D V++WD K V T D+H +V T+ + L+ A D + LWDL
Sbjct: 682 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 741
Query: 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281
C+ T+ + C P D L+S G +R+W+
Sbjct: 742 CRNTMFGHTNSVNHCRFSPD---DELLAS-------------------CSADGTLRLWDV 779
Query: 282 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 341
SA E+KS +V KR F ++ E P + +
Sbjct: 780 RSA--NERKSINV---------KRFFLSS------------------------EDPPEDV 804
Query: 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAGHSEIVL 400
E+I+ + + ++ + A N +V ++D+ +S + + GH +
Sbjct: 805 EVIVKC-----------CSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTI- 850
Query: 401 CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG 460
C S L V V LW+ +SR V GH+ V V FS +FL +
Sbjct: 851 --QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TA 907
Query: 461 SSDHTIKVWS---------------FDGLSDDAEQPM----NLKAKAVVAAHGKDINSL- 500
S D TI+VW D + + E + N++ ++A I+ L
Sbjct: 908 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP 967
Query: 501 -------AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT 553
++P+ V G +D + LP+ + GHK+ + ++F+ + +I+
Sbjct: 968 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1027
Query: 554 ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
+S D I++W+ G + + H +V + L + ++++S DG VK+W V TG
Sbjct: 1028 SSEDSVIQVWNWQTGDYV-FLQAHQETV-KDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1085
Query: 614 ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
+ H+ + + A+ F++ +D +W
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 527 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
+S + R H ++ FS Q + + DKT++++ G L + H VL +F
Sbjct: 613 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 672
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE--MFATGGSDALV 644
+ + I +C AD VK+W TG+ + TYD+H +++ K+ + ATG +D +
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 645 NLW 647
LW
Sbjct: 733 KLW 735
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 117/311 (37%), Gaps = 30/311 (9%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451
+ H + VLC CA SS I T S D V++WDS + V H V F+
Sbjct: 660 IKAHEDEVLC---CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN 716
Query: 452 KLQNFLV-SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510
K + L+ +GS+D +K+W + + + + H +N +P+D L+
Sbjct: 717 KSNHLLLATGSNDFFLKLWDLN----------QKECRNTMFGHTNSVNHCRFSPDDELLA 766
Query: 511 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI------TASGDKTIK--- 561
+ S D T +W + + KR S E P D VI +A GDK I
Sbjct: 767 SCSADGTLRLWDVRSANERKSINV-KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 825
Query: 562 ----IWSI-SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY 616
++ I + G + GH S++ F V + V+LW + + +A
Sbjct: 826 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 885
Query: 617 DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELENAV 676
H + + F T D + +W V+ QE E V
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV-FQENETMV 944
Query: 677 LDADYTKAIQV 687
L D + +Q+
Sbjct: 945 LAVDNIRGLQL 955
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Query: 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS 545
++ VV H + + + + + D+T V++ ++ + H+ + FS
Sbjct: 614 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS 673
Query: 546 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV--SCGADGLVK 603
D + T S DK +KIW + G + T++ H+ V F + ++ + D +K
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 604 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
LW + EC T H + + E+ A+ +D + LW
Sbjct: 734 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 12/161 (7%)
Query: 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG 115
++ +T+ L D +LL S ++VW++ T + R + H G + A
Sbjct: 1047 LQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1105
Query: 116 LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175
++ AD+ +W D H KGH G V F D LL +G D+ +R+W++
Sbjct: 1106 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF--SLDGILLATGDDNGEIRIWNV 1163
Query: 176 ----LAKKCVAT-----LDKHFSRVTSMAITSDGSTLISAG 207
L C H VT + + D TL+SAG
Sbjct: 1164 SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1204
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 636
HT +V A F G +I SCGAD ++++ TGE + HED++ A A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 637 TGGSDALVNLWHDST 651
T +D V +W +T
Sbjct: 681 TCSADKKVKIWDSAT 695
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 13/153 (8%)
Query: 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG 121
T+ + A+S D S+ + ++W L L KGH+G A G LLAT
Sbjct: 1094 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGD 1153
Query: 122 ADRKVLVWDVDGGFCTHY---------FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
+ ++ +W+V G H H G V+ + F PD+ K+L+ +G ++
Sbjct: 1154 DNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDS-KTLVSAG---GYLKW 1209
Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS 205
W++ T + + + + ++ D T ++
Sbjct: 1210 WNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT 1242
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 145/639 (22%), Positives = 242/639 (37%), Gaps = 82/639 (12%)
Query: 12 CEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPD 71
CEP + Y L +G E IN + N S + + +D + S D
Sbjct: 569 CEPETSEVYRQAKLQAKQEGD-TGRLYLEWINKKTIKNLS-RLVVRPHTDAVYHACFSQD 626
Query: 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131
+ + S G + ++V+ T + L K H+ + A +AT AD+KV +WD
Sbjct: 627 GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686
Query: 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV 191
G H + H V+ F ++ LL +GS+D +++WDL K+C T+ H + V
Sbjct: 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746
Query: 192 TSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY----------EMVEAVCAIPPG 241
+ D L S D + LWD+R + + ++ E VE +
Sbjct: 747 NHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806
Query: 242 SA---------------FDSFLSSY-------NQQTIKKKRRSLEIHFITVG-ERGIVRM 278
SA FD S + TI+ S H + + V +
Sbjct: 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866
Query: 279 WNADSACLYEQKSSDVTISFEMDDSKRGFTA----ATVLPSNQGLLCVTADQQLLLYTTV 334
WN DS K +D RG + P L + DQ + ++ T
Sbjct: 867 WNIDS----RLKVADC----------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Query: 335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG 394
+V K ++L + +D+ F E LAV NI +Q+ + Y+
Sbjct: 913 KVC-KNSAIVLKQE--------IDVVFQENETMVLAV-DNIRGLQLIAGKTGQIDYLPEA 962
Query: 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454
+ C LS + G +D ++++ + + G GH AV + F+ +
Sbjct: 963 Q------VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016
Query: 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514
L+S S D I+VW++ + AH + + + DS + + S
Sbjct: 1017 T-LISSSEDSVIQVWNW-----------QTGDYVFLQAHQETVKDFRLL-QDSRLLSWSF 1063
Query: 515 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574
D T VW + F H+ + S S + S DKT KIWS S L
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1123
Query: 575 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
+GH V ++F G + + +G +++W V G+ +
Sbjct: 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 128/574 (22%), Positives = 227/574 (39%), Gaps = 109/574 (18%)
Query: 105 AIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS 163
A+ AC G +A+ GAD+ + V+ + G K H+ V F +D S + +
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF--SSDDSYIAT 674
Query: 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA--GRDKVVNLWDLRDYS 221
S D V++WD K V T D+H +V T+ + L+ A D + LWDL
Sbjct: 675 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734
Query: 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281
C+ T+ + C P D L+S G +R+W+
Sbjct: 735 CRNTMFGHTNSVNHCRFSPD---DELLAS-------------------CSADGTLRLWDV 772
Query: 282 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 341
SA E+KS +V KR F ++ E P + +
Sbjct: 773 RSA--NERKSINV---------KRFFLSS------------------------EDPPEDV 797
Query: 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAGHSEIVL 400
E+I+ + + ++ + A N +V ++D+ +S + + GH +
Sbjct: 798 EVIVKC-----------CSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTI- 843
Query: 401 CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG 460
C S L V V LW+ +SR V GH+ V V FS +FL +
Sbjct: 844 --QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TA 900
Query: 461 SSDHTIKVWS---------------FDGLSDDAEQPM----NLKAKAVVAAHGKDINSL- 500
S D TI+VW D + + E + N++ ++A I+ L
Sbjct: 901 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP 960
Query: 501 -------AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT 553
++P+ V G +D + LP+ + GHK+ + ++F+ + +I+
Sbjct: 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020
Query: 554 ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
+S D I++W+ G + + H +V + L + ++++S DG VK+W V TG
Sbjct: 1021 SSEDSVIQVWNWQTGDYV-FLQAHQETV-KDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078
Query: 614 ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
+ H+ + + A+ F++ +D +W
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 527 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
+S + R H ++ FS Q + + DKT++++ G L + H VL +F
Sbjct: 606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 665
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE--MFATGGSDALV 644
+ + I +C AD VK+W TG+ + TYD+H +++ K+ + ATG +D +
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 645 NLW 647
LW
Sbjct: 726 KLW 728
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 117/311 (37%), Gaps = 30/311 (9%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451
+ H + VLC CA SS I T S D V++WDS + V H V F+
Sbjct: 653 IKAHEDEVLC---CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN 709
Query: 452 KLQNFLV-SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510
K + L+ +GS+D +K+W + + + + H +N +P+D L+
Sbjct: 710 KSNHLLLATGSNDFFLKLWDLN----------QKECRNTMFGHTNSVNHCRFSPDDELLA 759
Query: 511 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI------TASGDKTIK--- 561
+ S D T +W + + KR S E P D VI +A GDK I
Sbjct: 760 SCSADGTLRLWDVRSANERKSINV-KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818
Query: 562 ----IWSI-SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY 616
++ I + G + GH S++ F V + V+LW + + +A
Sbjct: 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878
Query: 617 DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELENAV 676
H + + F T D + +W V+ QE E V
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV-FQENETMV 937
Query: 677 LDADYTKAIQV 687
L D + +Q+
Sbjct: 938 LAVDNIRGLQL 948
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Query: 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS 545
++ VV H + + + + + D+T V++ ++ + H+ + FS
Sbjct: 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS 666
Query: 546 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV--SCGADGLVK 603
D + T S DK +KIW + G + T++ H+ V F + ++ + D +K
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 604 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
LW + EC T H + + E+ A+ +D + LW
Sbjct: 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 12/161 (7%)
Query: 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG 115
++ +T+ L D +LL S ++VW++ T + R + H G + A
Sbjct: 1040 LQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1098
Query: 116 LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175
++ AD+ +W D H KGH G V F D LL +G D+ +R+W++
Sbjct: 1099 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF--SLDGILLATGDDNGEIRIWNV 1156
Query: 176 ----LAKKCVAT-----LDKHFSRVTSMAITSDGSTLISAG 207
L C H VT + + D TL+SAG
Sbjct: 1157 SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 636
HT +V A F G +I SCGAD ++++ TGE + HED++ A A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 637 TGGSDALVNLWHDST 651
T +D V +W +T
Sbjct: 674 TCSADKKVKIWDSAT 688
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 77/185 (41%), Gaps = 13/185 (7%)
Query: 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL 89
D ++ + ++ + ++ I+ T+ + A+S D S+ + ++W
Sbjct: 1055 DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114
Query: 90 STLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY---------F 140
L L KGH+G A G LLAT + ++ +W+V G H
Sbjct: 1115 DLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1174
Query: 141 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG 200
H G V+ + F PD+ K+L+ +G ++ W++ T + + + + ++ D
Sbjct: 1175 ATHGGWVTDVCFSPDS-KTLVSAG---GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDF 1230
Query: 201 STLIS 205
T ++
Sbjct: 1231 RTYVT 1235
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 147/681 (21%), Positives = 257/681 (37%), Gaps = 112/681 (16%)
Query: 12 CEPVLQQFYGGGPLVVSS--DGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALS 69
CEP + Y L D + NI +LS ++ +D + S
Sbjct: 575 CEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRP----HTDAVYHACFS 630
Query: 70 PDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129
D + + S G + ++V+ T + L K H+ + A +AT D+KV +W
Sbjct: 631 EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 130 DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS 189
+ G H + H V+ F + LL +GS D +++WDL K+C T+ H +
Sbjct: 691 NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTN 750
Query: 190 RVTSMAITSDGSTLISAGRDKVVNLWD-----------LRDYSCKLTVPTYEM--VEAVC 236
V + D L S D + LWD ++ + L P +M + C
Sbjct: 751 SVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCC 810
Query: 237 AIPPGSA------------FDSFLSSY-------NQQTIKKKRRSLEIHFITVG-ERGIV 276
+ A FD S + TI+ S + H V + V
Sbjct: 811 SWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCV 870
Query: 277 RMWNADSACLYEQKSSDVTISFEMDDSKRGFTA----ATVLPSNQGLLCVTADQQLLLYT 332
+WN DS K +D RG + P L + DQ + L+
Sbjct: 871 ELWNTDS----RSKVADC----------RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Query: 333 T--------------VEVPEKKMELIL-----SKRLVGYNEEILDLKFLGEEE------- 366
T V+V ++ E+++ +RL N + +L E +
Sbjct: 917 TKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLS 976
Query: 367 ---QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423
QY+A +++ +L + H + V + ++ + +++ S D +
Sbjct: 977 PHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHI---QFTADEKTLISSSDDAEI 1033
Query: 424 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 483
++W+ + C+ + GH V K + L+S S D T+KVW+ ++ + E+
Sbjct: 1034 QVWNWQLDKCIFL-RGHQETVKDFRLLKNSR--LLSWSFDGTVKVWNI--ITGNKEKDF- 1087
Query: 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE 543
H + S ++ + + + S D+TA +W L+ + RGH +
Sbjct: 1088 -------VCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSA 1140
Query: 544 FSPVDQVVITASGDKTIKIWSISDGSCLK-----TFEG---HTSSVLRASFLTRGAQIVS 595
FS ++ T + I+IW++S+G L + EG H V F G ++S
Sbjct: 1141 FSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLIS 1200
Query: 596 CGADGLVKLWTVRTGECIATY 616
G G +K W V TGE T+
Sbjct: 1201 AG--GYIKWWNVVTGESSQTF 1219
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 127/576 (22%), Positives = 226/576 (39%), Gaps = 113/576 (19%)
Query: 105 AIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS 163
A+ AC G +A+ GAD+ + V+ + G K H+ V F TD + +
Sbjct: 623 AVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAF--STDDRFIAT 680
Query: 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA--GRDKVVNLWDLRDYS 221
S D V++W+ + + V T D+H +V T+ L+ A D + LWDL
Sbjct: 681 CSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKE 740
Query: 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281
C+ T+ + C P D L+S G +++W+A
Sbjct: 741 CRNTMFGHTNSVNHCRFSPD---DKLLAS-------------------CSADGTLKLWDA 778
Query: 282 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 341
SA E+KS +V +Q L +E P++ M
Sbjct: 779 TSA--NERKSINV-------------------------------KQFFL--NLEDPQEDM 803
Query: 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAGHSEIVL 400
E+I+ + + + + A N ++ ++D+ +S + GH +
Sbjct: 804 EVIVKC-----------CSWSADGARIMVAAKN--KIFLFDIHTSGLLGEIHTGHHSTI- 849
Query: 401 CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG 460
C S L V V LW+++SR V GH+ V V FS +FL S
Sbjct: 850 --QYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS- 906
Query: 461 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC----TGSQD- 515
S D TI++W + ++ + LK + V ++ LAV L TG D
Sbjct: 907 SDDQTIRLWETKKVCKNS--AVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDY 964
Query: 516 ----RTACVWRLP-----------------DLVSVVTFRG---HKRGIWSVEFSPVDQVV 551
+ +C P +LV+ F+ HK+ +W ++F+ ++ +
Sbjct: 965 LTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTL 1024
Query: 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
I++S D I++W+ C+ GH +V + L + ++++S DG VK+W + TG
Sbjct: 1025 ISSSDDAEIQVWNWQLDKCI-FLRGHQETV-KDFRLLKNSRLLSWSFDGTVKVWNIITGN 1082
Query: 612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
+ H+ + + + F++ +D +W
Sbjct: 1083 KEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 527 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
+S + R H ++ FS Q + + DKT++++ G L + H VL +F
Sbjct: 612 LSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAF 671
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE--MFATGGSDALV 644
T I +C D VK+W TGE + TYD+H +++ + + ATG SD +
Sbjct: 672 STDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFL 731
Query: 645 NLW 647
LW
Sbjct: 732 KLW 734
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 2/164 (1%)
Query: 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS 545
++ VV H + + + + + D+T V++ ++ + H+ + FS
Sbjct: 613 SRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFS 672
Query: 546 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV--SCGADGLVK 603
D+ + T S DK +KIW+ G + T++ H+ V F ++ + +D +K
Sbjct: 673 TDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLK 732
Query: 604 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
LW + EC T H + + ++ A+ +D + LW
Sbjct: 733 LWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 636
HT +V A F G +I SCGAD ++++ TGE + HED++ A A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 637 TGGSDALVNLWHDST 651
T D V +W+ T
Sbjct: 680 TCSVDKKVKIWNSMT 694
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG 121
T+ + +S D S+ + ++W L L +GH+G A LLAT
Sbjct: 1093 TVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGD 1152
Query: 122 ADRKVLVWDVDGGFCTHYF--------KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
+ ++ +W+V G H H G V+ + F PD K L+ +G ++ W
Sbjct: 1153 DNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDG-KMLISAG---GYIKWW 1208
Query: 174 DLLAKKCVATLDKHFSRVTSMAITSDGSTLIS 205
+++ + T + + + + ++ D T ++
Sbjct: 1209 NVVTGESSQTFYTNGTNLKKIHVSPDFKTYVT 1240
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 27 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 82
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 83 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 141
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 142 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 191
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 192 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 251
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 252 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 311
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 312 ASAALENDKTIKLW 325
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 5/211 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 49 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 108
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 109 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 168
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ H + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 169 VSAV--HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 226
Query: 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
A D + LWD C L T E C
Sbjct: 227 ATLDNTLKLWDYSKGKC-LKTYTGHKNEKYC 256
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 146
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + D++
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 95
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 156 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 192
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 193 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 235
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 236 -------------------------------------------WDYSKGKCLKTYTGHKN 252
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 253 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 311
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 312 ASAALENDKTIKLWKSD 328
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565
++L G+Q + V P+ T GH + + SV+FSP + + ++S DK IKIW
Sbjct: 12 ENLYFQGTQSKPTPV--KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 69
Query: 566 SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 625
DG KT GH + ++ + +VS D +K+W V +G+C+ T H + ++
Sbjct: 70 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 129
Query: 626 LAVGKKTEMFATGGSDALVNLW 647
++ + +G D V +W
Sbjct: 130 CNFNPQSNLIVSGSFDESVRIW 151
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 296
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 297 DVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 13/178 (7%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-SFDGLSDDAEQPMNLKAKAVVAAHGKDI 497
GH AV +V FS + +L S S+D IK+W ++DG K + ++ H I
Sbjct: 24 GHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDG-----------KFEKTISGHKLGI 71
Query: 498 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557
+ +A + + +L+ + S D+T +W + + T +GH ++ F+P ++++ S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT 615
++++IW + G CLKT H+ V F G+ IVS DGL ++W +G+C+ T
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 140/302 (46%), Gaps = 19/302 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 68
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 127
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 128 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 636 AT 637
A+
Sbjct: 298 AS 299
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 5/211 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 35 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 94
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ H + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 155 VSAV--HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
A D + LWD C L T E C
Sbjct: 213 ATLDNTLKLWDYSKGKC-LKTYTGHKNEKYC 242
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 132
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 81
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 178
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 179 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 221
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 222 -------------------------------------------WDYSKGKCLKTYTGHKN 238
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 297
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK++ D
Sbjct: 298 ASAALENDKTIKLYKSD 314
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%)
Query: 524 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 583
P+ T GH + + SV+FSP + + ++S DK IKIW DG KT GH +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 584 ASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL 643
++ + +VS D +K+W V +G+C+ T H + ++ ++ + +G D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 644 VNLW 647
V +W
Sbjct: 134 VRIW 137
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T++++
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLY 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 13/178 (7%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-SFDGLSDDAEQPMNLKAKAVVAAHGKDI 497
GH AV +V FS + +L S S+D IK+W ++DG K + ++ H I
Sbjct: 24 GHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDG-----------KFEKTISGHKLGI 71
Query: 498 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557
+ +A + + +L+ + S D+T +W + + T +GH ++ F+P ++++ S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT 615
++++IW + G CLKT H+ V F G+ IVS DGL ++W +G+C+ T
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 140/302 (46%), Gaps = 19/302 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 68
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 127
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 128 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 636 AT 637
A+
Sbjct: 298 AS 299
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 5/211 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 35 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 94
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ H + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 155 VSAV--HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
A D + LWD C L T E C
Sbjct: 213 ATLDNTLKLWDYSKGKC-LKTYTGHKNEKYC 242
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 132
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 81
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 178
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 179 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 221
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 222 -------------------------------------------WDYSKGKCLKTYTGHKN 238
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 297
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK++ D
Sbjct: 298 ASAALENDKTIKLFKSD 314
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 130/308 (42%), Gaps = 50/308 (16%)
Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
+ + F + + ++ P+ + L +AD+ + ++ + K E K + G+
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFE----KTISGH 67
Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412
I D+ + + L A++ + ++++D+SS C L GHS V C C +
Sbjct: 68 KLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC---CNFNPQSN 123
Query: 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS-- 470
LIV+GS D SVR+WD ++ C+ H V AV F++ + +VS S D ++W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTA 182
Query: 471 ----FDGLSDDAEQPMNL-----KAKAVVAA------------HGKDINSLAVAPNDSL- 508
L DD P++ K ++AA GK + + N+
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 509 ------------VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS- 555
+ +GS+D +W L V +GH + S P + ++ +A+
Sbjct: 243 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 302
Query: 556 -GDKTIKI 562
DKTIK+
Sbjct: 303 ENDKTIKL 310
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%)
Query: 524 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 583
P+ T GH + + SV+FSP + + ++S DK IKIW DG KT GH +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 584 ASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL 643
++ + +VS D +K+W V +G+C+ T H + ++ ++ + +G D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 644 VNLW 647
V +W
Sbjct: 134 VRIW 137
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Query: 145 GVVSSILFHP 154
VV S HP
Sbjct: 283 DVVISTACHP 292
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 87
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 88 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 146
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 147 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 197 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 256
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 257 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 316
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 317 ASAALENDKTIKLW 330
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 4/197 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 54 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 113
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 114 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 173
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ F + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 174 VSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 231
Query: 206 AGRDKVVNLWDLRDYSC 222
A D + LWD C
Sbjct: 232 ATLDNTLKLWDYSKGKC 248
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 151
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + +D +
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSN 100
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 161 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 197
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 198 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 240
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 241 -------------------------------------------WDYSKGKCLKTYTGHKN 257
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 258 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 316
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 317 ASAALENDKTIKLWKSD 333
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 301
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 302 DVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 155
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 34 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 89
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 90 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 148
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 149 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 198
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 199 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 258
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 259 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 318
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 319 ASAALENDKTIKLW 332
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 4/197 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 56 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 115
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 116 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 175
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ F + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 176 VSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 233
Query: 206 AGRDKVVNLWDLRDYSC 222
A D + LWD C
Sbjct: 234 ATLDNTLKLWDYSKGKC 250
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 153
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + +D +
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSN 102
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 163 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 199
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 200 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 242
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 243 -------------------------------------------WDYSKGKCLKTYTGHKN 259
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 318
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 319 ASAALENDKTIKLWKSD 335
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 303
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 304 DVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 71
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 130
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 131 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 300
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 301 ASAALENDKTIKLW 314
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 4/197 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 38 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 97
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 98 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ F + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 158 VSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 206 AGRDKVVNLWDLRDYSC 222
A D + LWD C
Sbjct: 216 ATLDNTLKLWDYSKGKC 232
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 135
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + +D +
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSN 84
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 181
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 182 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 224
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 225 -------------------------------------------WDYSKGKCLKTYTGHKN 241
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 300
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 301 ASAALENDKTIKLWKSD 317
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF ++LA ++ + ++++ ++GH
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 71
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 130
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 131 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 300
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 301 ASAALENDKTIKLW 314
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 135
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 4/197 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 38 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 97
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 98 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ F + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 158 VSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 206 AGRDKVVNLWDLRDYSC 222
A D + LWD C
Sbjct: 216 ATLDNTLKLWDYSKGKC 232
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + D++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 84
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 181
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 182 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 224
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 225 -------------------------------------------WDYSKGKCLKTYTGHKN 241
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 300
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 301 ASAALENDKTIKLWKSD 317
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF ++LA ++ + ++++ ++GH
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 61
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 62 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 120
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 121 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 170
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 171 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 230
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 231 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 290
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 291 ASAALENDKTIKLW 304
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 4/197 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 28 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 87
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 88 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 147
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ H + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 148 VSAV--HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 205
Query: 206 AGRDKVVNLWDLRDYSC 222
A D + LWD C
Sbjct: 206 ATLDNTLKLWDYSKGKC 222
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 125
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + D++
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 74
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 135 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 171
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 172 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 214
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 215 -------------------------------------------WDYSKGKCLKTYTGHKN 231
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 290
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 291 ASAALENDKTIKLWKSD 307
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 275
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 276 DVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 71
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 130
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 131 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 300
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 301 ASAALENDKTIKLW 314
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 135
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 4/197 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 38 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 97
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 98 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ F + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 158 VSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 206 AGRDKVVNLWDLRDYSC 222
A D + LWD C
Sbjct: 216 ATLDNTLKLWDYSKGKC 232
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + D++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 84
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 181
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 182 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 224
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 225 -------------------------------------------WDYSKGKCLKTYTGHKN 241
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 300
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 301 ASAALENDKTIKLWKSD 317
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 119/258 (46%), Gaps = 33/258 (12%)
Query: 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100
+I + D + T++G +D++ ++ KLL S I++WD +C+R+ G
Sbjct: 131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG 190
Query: 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160
HD ++ P+G + +A D+ + +W+V G+C F GH+ V + P+ D +L
Sbjct: 191 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTL 248
Query: 161 LFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD--------------------G 200
+ S S+D TVRVW + K+C A L +H V ++ + G
Sbjct: 249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308
Query: 201 STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK--- 257
L+S RDK + +WD+ C +T+ ++ G F LS + +T++
Sbjct: 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF--ILSCADDKTLRVWD 366
Query: 258 -KKRRSLEI-----HFIT 269
K +R ++ HF+T
Sbjct: 367 YKNKRCMKTLNAHEHFVT 384
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 34/299 (11%)
Query: 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428
+ A+ ++V+D + L GH++ V D SGK+L + S D +++LWD
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQ--DISFDHSGKLL-ASCSADMTIKLWDF 179
Query: 429 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488
+ C+ GH V +V+ + +VS S D TIK+W + + +K
Sbjct: 180 QGFECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMW-------EVQTGYCVK--- 228
Query: 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548
H + + + + +L+ + S D+T VW + R H+ + + ++P
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 288
Query: 549 Q--------------------VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 588
+++ S DKTIK+W +S G CL T GH + V F +
Sbjct: 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 348
Query: 589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
G I+SC D +++W + C+ T + HE + +L K TG D V +W
Sbjct: 349 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 112/272 (41%), Gaps = 19/272 (6%)
Query: 17 QQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLF 76
++F GGPL D + K + G +T + P ++
Sbjct: 77 EEFTSGGPLGQKRDPKEW------------IPRPPEKYALSGHRSPVTRVIFHPVFSVMV 124
Query: 77 SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC 136
S+ I+VWD T R+ KGH ++ SG LLA+ AD + +WD G C
Sbjct: 125 SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 184
Query: 137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI 196
GH VSS+ P+ D + S S D T+++W++ CV T H V +
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDH--IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242
Query: 197 TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 256
DG+ + S D+ V +W + CK + + V + P S++ S + +T
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 257 KKKRRSLEIHFITVGER-GIVRMWNADSA-CL 286
K + F+ G R ++MW+ + CL
Sbjct: 303 KSGKPGP---FLLSGSRDKTIKMWDVSTGMCL 331
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 96/234 (41%), Gaps = 31/234 (13%)
Query: 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 497
+GH V V F + +VS S D TIKVW ++ + D E+ + H +
Sbjct: 105 SGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYE--TGDFERTLK--------GHTDSV 153
Query: 498 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557
++ + L+ + S D T +W + T GH + SV P +++AS D
Sbjct: 154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 213
Query: 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
KTIK+W + G C+KTF GH V G I SC D V++W V T EC A
Sbjct: 214 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 273
Query: 618 KHEDKI----WA----------------LAVGKKTEMFATGGSDALVNLWHDST 651
+H + WA GK +G D + +W ST
Sbjct: 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 35 ACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC 94
+C+ +I + D T+ G ++++++ P+ + S+ + I++W++ T C
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 95 LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP 154
++++ GH + + G L+A+ D+ V VW V C + H+ VV I + P
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
Query: 155 DTDKS------------------LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI 196
++ S L SGS D T+++WD+ C+ TL H + V +
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346
Query: 197 TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230
S G ++S DK + +WD ++ C T+ +E
Sbjct: 347 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 119/284 (41%), Gaps = 35/284 (12%)
Query: 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT 404
+ L G+ + + D+ F + LA + ++++D C + GH V +
Sbjct: 142 FERTLKGHTDSVQDISF-DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV---SS 197
Query: 405 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 464
++ IV+ S+D ++++W+ ++ CV TGH V V ++ + S S+D
Sbjct: 198 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQ 256
Query: 465 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS----------------- 507
T++VW + KA + H + ++ AP S
Sbjct: 257 TVRVWVV----------ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306
Query: 508 ---LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564
+ +GS+D+T +W + + ++T GH + V F + +++ + DKT+++W
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 565 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608
+ C+KT H V F +V+ D VK+W R
Sbjct: 367 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 45/272 (16%)
Query: 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449
Y L+GH V + + S ++V+ S+D ++++WD E+ GH +V ++F
Sbjct: 102 YALSGHRSPVTRVIFHPVFS---VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 158
Query: 450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN--SLAVAPNDS 507
L S S+D TIK+W F G + + HG D N S+++ PN
Sbjct: 159 DHS-GKLLASCSADMTIKLWDFQGF------------ECIRTMHGHDHNVSSVSIMPNGD 205
Query: 508 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567
+ + S+D+T +W + V TF GH+ + V + ++ + S D+T+++W ++
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 568 GSCLKTFEGHTSSVLRASFLTR--------------------GAQIVSCGADGLVKLWTV 607
C H V S+ G ++S D +K+W V
Sbjct: 266 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Query: 608 RTGECIATYDKHEDKIWALAVGKKTEMFATGG 639
TG C+ T H++ W V +F +GG
Sbjct: 326 STGMCLMTLVGHDN--WVRGV-----LFHSGG 350
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%)
Query: 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP 546
K ++ H + + P S++ + S+D T VW T +GH + + F
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 547 VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606
+++ + S D TIK+W C++T GH +V S + G IVS D +K+W
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 607 VRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
V+TG C+ T+ H + + + + + A+ +D V +W
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 22/213 (10%)
Query: 26 VVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
++ + ++ + ++I + ++ T G + + + + D L+ S + + +R
Sbjct: 200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259
Query: 86 VWDLSTLKCLRSWKGHDGPAIGMACHPS--------------------GGLLATAGADRK 125
VW ++T +C + H ++ P G L + D+
Sbjct: 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 126 VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD 185
+ +WDV G C GH V +LFH + + S +DD T+RVWD K+C+ TL+
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMKTLN 377
Query: 186 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218
H VTS+ +++ D+ V +W+ R
Sbjct: 378 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF ++LA ++ + ++++ ++GH
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 64
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 65 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 123
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 124 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 173
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 233
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 234 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 293
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 294 ASAALENDKTIKLW 307
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 5/225 (2%)
Query: 1 MASLPLKKSYGCEPVLQQFYGG-GPLVVSSDGSFIACACGES-INIVDLSNASIKSTIEG 58
+ S P+K +Y + L + S +G ++A + + I I + + TI G
Sbjct: 3 LGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 62
Query: 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA 118
I+ +A S D LL S+ + +++WD+S+ KCL++ KGH +P L+
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 119 TAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178
+ D V +WDV G C H VS++ H + D SL+ S S D R+WD +
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 179 KCVATL-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 222
+C+ TL D V+ + + +G +++A D + LWD C
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 225
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + D++
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 77
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 138 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 174
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 175 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 217
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 218 -------------------------------------------WDYSKGKCLKTYTGHKN 234
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 293
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 294 ASAALENDKTIKLWKSD 310
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 278
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 279 DVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 65
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 124
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 125 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 294
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 295 ASAALENDKTIKLW 308
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 5/211 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 32 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ F + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 152 VSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209
Query: 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
A D + LWD C L T E C
Sbjct: 210 ATLDNTLKLWDYSKGKC-LKTYTGHKNEKYC 239
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 129
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + D++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 78
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 175
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 176 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 218
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 219 -------------------------------------------WDYSKGKCLKTYTGHKN 235
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 294
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 295 ASAALENDKTIKLWKSD 311
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 571
G+Q + V P+ T GH + + SV+FSP + + ++S DK IKIW DG
Sbjct: 1 GTQSKPTPV--KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 58
Query: 572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK 631
KT GH + ++ + +VS D +K+W V +G+C+ T H + ++ +
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 632 TEMFATGGSDALVNLW 647
+ + +G D V +W
Sbjct: 119 SNLIVSGSFDESVRIW 134
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 280 DVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF ++LA ++ + ++++ ++GH
Sbjct: 15 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 70
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 71 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 129
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 130 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 179
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 180 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 239
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 240 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 299
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 300 ASAALENDKTIKLW 313
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 134
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 5/211 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 37 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 96
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 97 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 156
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ F + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 157 VSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 214
Query: 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
A D + LWD C L T E C
Sbjct: 215 ATLDNTLKLWDYSKGKC-LKTYTGHKNEKYC 244
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + D++
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 83
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 144 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 180
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 181 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 223
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 224 -------------------------------------------WDYSKGKCLKTYTGHKN 240
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 241 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 299
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 300 ASAALENDKTIKLWKSD 316
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 284
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 285 DVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 65
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 124
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 125 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 294
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 295 ASAALENDKTIKLW 308
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 4/197 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 32 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ H + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 152 VSAV--HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209
Query: 206 AGRDKVVNLWDLRDYSC 222
A D + LWD C
Sbjct: 210 ATLDNTLKLWDYSKGKC 226
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 129
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + D++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 78
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 175
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 176 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 218
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 219 -------------------------------------------WDYSKGKCLKTYTGHKN 235
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 294
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 295 ASAALENDKTIKLWKSD 311
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 280 DVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + + S D+ +W D T GHK GI V
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHK--- 66
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 67 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 125
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 126 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 175
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 176 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 235
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 236 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 295
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 296 ASAALENDKTIKLW 309
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 5/211 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 33 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 92
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 93 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 152
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ F + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 153 VSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 210
Query: 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
A D + LWD C L T E C
Sbjct: 211 ATLDNTLKLWDYSKGKC-LKTYTGHKNEKYC 240
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 130
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + D++
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 79
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 140 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 176
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 177 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 219
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 220 -------------------------------------------WDYSKGKCLKTYTGHKN 236
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 295
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 296 ASAALENDKTIKLWKSD 312
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 280
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 281 DVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 86/165 (52%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
N K +A H K ++S+ +PN + S D+ +W D T GHK GI V
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 543 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602
+S ++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
++W V+TG+C+ T H D + A+ + + + D L +W
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF E +LA ++ + ++++ ++GH
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGE-WLAASSADKLIKIWGAYDGKFEKTISGHK--- 68
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 127
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + LK + AH ++++ + SL+ + S D
Sbjct: 128 GSFDESVRIW-------DVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D LV +W ++T E + H D + + A +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 298 ASAALENDKTIKLW 311
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 5/211 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 35 SPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 94
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ H + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 155 VSAV--HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
A D + LWD C L T E C
Sbjct: 213 ATLDNTLKLWDYSKGKC-LKTYTGHKNEKYC 242
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++K T+ G + ++++ SP+ + L +S + I++W K ++ GH +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 132
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ KC+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 142/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA + AD+ + +W G GHK +S + + D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 81
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 178
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 179 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 221
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 222 -------------------------------------------WDYSKGKCLKTYTGHKN 238
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 297
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 298 ASAALENDKTIKLWKSD 314
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 146/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF ++LA ++ + ++++ ++GH
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 68
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 127
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + M LK + AH ++++ + SL+ + S D
Sbjct: 128 GSFDESVRIW-------DVKTGMCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D T+K+W S G CLKT+ GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D +V +W ++T E + H D + + A +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 298 ASAALENDKTIKLW 311
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 4/197 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 35 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 94
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ H + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 155 VSAV--HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 206 AGRDKVVNLWDLRDYSC 222
A D + LWD C
Sbjct: 213 ATLDNTLKLWDYSKGKC 229
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++ T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 132
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ C+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 81
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 178
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 179 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNTLKL------- 221
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 222 -------------------------------------------WDYSKGKCLKTYTGHKN 238
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 297
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 298 ASAALENDKTIKLWKSD 314
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ +++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLW 311
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 73 KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG--ADRKVLVWD 130
K + S + +W+L T + ++ +GH I ACHP+ ++A+A D+ + +W
Sbjct: 253 KWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Query: 131 VD 132
D
Sbjct: 313 SD 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 84/159 (52%)
Query: 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548
+A H K ++S+ +PN + + S D+ +W D T GHK GI V +S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 549 QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608
++++AS DKT+KIW +S G CLKT +GH++ V +F + IVS D V++W V+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
TG C+ T H D + A+ + + + D L +W
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
K L L G+ + + +KF ++LA ++ + ++++ ++GH
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--- 68
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
L + A SS L+V+ S D ++++WD S C+ GH V F+ + N +VS
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVS 127
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
GS D ++++W D + M LK + AH ++++ + SL+ + S D
Sbjct: 128 GSFDESVRIW-------DVKTGMCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 520 VWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578
+W + T S V+FSP + ++ A+ D +K+W S G CLKT+ GH
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHK 237
Query: 579 SS--VLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635
+ + A+F +T G IVS D +V +W ++T E + H D + + A +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 636 ATGG--SDALVNLW 647
A+ +D + LW
Sbjct: 298 ASAALENDKTIKLW 311
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 4/197 (2%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G ++A + + I I + + TI G I+ +A S D LL S+ + +++
Sbjct: 35 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 94
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WD+S+ KCL++ KGH +P L+ + D V +WDV G C H
Sbjct: 95 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLIS 205
VS++ H + D SL+ S S D R+WD + +C+ TL D V+ + + +G +++
Sbjct: 155 VSAV--HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 206 AGRDKVVNLWDLRDYSC 222
A D + LWD C
Sbjct: 213 ATLDNDLKLWDYSKGKC 229
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 2/178 (1%)
Query: 49 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM 108
N ++ T+ G + ++++ SP+ + L SS + I++W K ++ GH +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
A LL +A D+ + +WDV G C KGH V F+P ++ L+ SGS D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDE 132
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
+VR+WD+ C+ TL H V+++ DGS ++S+ D + +WD C T+
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 143/377 (37%), Gaps = 90/377 (23%)
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159
GH + P+G LA++ AD+ + +W G GHK +S + + D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN-- 81
Query: 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
LL S SDD T+++WD+ + KC+ TL H + V + ++S D+ V +WD++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 220 YSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
C T+P + + V AV GS S SSY+ G+ R+
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYD---------------------GLCRI 178
Query: 279 WN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337
W+ A CL +DD + P+ + +L T D L L
Sbjct: 179 WDTASGQCLKTL----------IDDDNPPVSFVKFSPNGKYILAATLDNDLKL------- 221
Query: 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+D S C GH
Sbjct: 222 -------------------------------------------WDYSKGKCLKTYTGHKN 238
Query: 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457
C+ +G IV+GS+DN V +W+ +++ V GH V + A +N +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENII 297
Query: 458 VSGS--SDHTIKVWSFD 472
S + +D TIK+W D
Sbjct: 298 ASAALENDKTIKLWKSD 314
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 5/149 (3%)
Query: 30 DGSFIACACGESI-NIVDL-SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
DGS I + + + I D S +K+ I+ + ++ + SP+ K + ++ ++++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
D S KCL+++ GH + + S G + + D V +W++ +GH
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VV S HP + + +D T+++W
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 27/258 (10%)
Query: 391 VLAGHSE-IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449
VL GH + ++ CL C IV+GS DN++++W + + C+ GH G V +
Sbjct: 113 VLKGHDDHVITCLQFCGNR-----IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--- 164
Query: 450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 509
S+ N ++SGS+D T+KVW+ + + + +G + ++ V
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAE------------TGECIHTLYGHTSTVRCMHLHEKRV 212
Query: 510 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569
+GS+D T VW + + GH + V++ + V++ + D +K+W +
Sbjct: 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETET 270
Query: 570 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG 629
CL T +GHT+ V F G +VS D +++W V TG CI T H+ + +
Sbjct: 271 CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL- 327
Query: 630 KKTEMFATGGSDALVNLW 647
K + +G +D+ V +W
Sbjct: 328 -KDNILVSGNADSTVKIW 344
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 149/321 (46%), Gaps = 39/321 (12%)
Query: 334 VEVPEKKMELILSKRLVGYNEEILD-LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL 392
++ ++ EL K L G+++ ++ L+F G + ++ ++V+ + C L
Sbjct: 99 IDTNWRRGELKSPKVLKGHDDHVITCLQFCGNR---IVSGSDDNTLKVWSAVTGKCLRTL 155
Query: 393 AGHSEIVLCLDTCALSSGKI---LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449
GH T + S ++ +I++GS D ++++W++E+ C+ GH V +
Sbjct: 156 VGH--------TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 509
+K +VSGS D T++VW + Q +++ V A V + V
Sbjct: 208 HEKR---VVSGSRDATLRVWDIE-----TGQCLHVLMGHVAAVR-------CVQYDGRRV 252
Query: 510 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569
+G+ D VW + T +GH ++S++F + V++ S D +I++W + G+
Sbjct: 253 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGN 310
Query: 570 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY---DKHEDKIWAL 626
C+ T GH S L + + +VS AD VK+W ++TG+C+ T +KH+ + L
Sbjct: 311 CIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 368
Query: 627 AVGKKTEMFATGGSDALVNLW 647
K T D V LW
Sbjct: 369 QFNK--NFVITSSDDGTVKLW 387
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 27/239 (11%)
Query: 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 437
++V++ + C + L GH+ V C+ L ++ V+GS+D ++R+WD E+ C+ V
Sbjct: 181 LKVWNAETGECIHTLYGHTSTVRCMH---LHEKRV--VSGSRDATLRVWDIETGQCLHVL 235
Query: 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 497
GH+ AV V + + +VSG+ D +KVW D E L + H +
Sbjct: 236 MGHVAAVRCVQYDGRR---VVSGAYDFMVKVW-------DPETETCLHT---LQGHTNRV 282
Query: 498 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557
SL + V +GS D + VW + + T GH+ +E D ++++ + D
Sbjct: 283 YSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD 338
Query: 558 KTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
T+KIW I G CL+T +G H S+V F +++ DG VKLW ++TGE I
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFI 395
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Query: 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL 89
D I+ + ++ + + T+ G + T+ + L +K + S +RVWD+
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI 226
Query: 90 STLKCLRSWKGHDGPAIGMACHPSGGLLATAGA-DRKVLVWDVDGGFCTHYFKGHKGVVS 148
T +CL GH + C G +GA D V VWD + C H +GH V
Sbjct: 227 ETGQCLHVLMGH---VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 283
Query: 149 SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208
S+ F D + SGS D ++RVWD+ C+ TL H S + M + + L+S
Sbjct: 284 SLQF----DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNA 337
Query: 209 DKVVNLWDLRDYSCKLTV 226
D V +WD++ C T+
Sbjct: 338 DSTVKIWDIKTGQCLQTL 355
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 75 LFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG 134
+ S ++VW T KCLR+ GH G + ++ + DR + VW+ + G
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--WSSQMRDNIIISGSTDRTLKVWNAETG 189
Query: 135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 194
C H GH V + H + + SGS DAT+RVWD+ +C+ L H + V
Sbjct: 190 ECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV--R 243
Query: 195 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY 229
+ DG ++S D +V +WD +C T+ +
Sbjct: 244 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH 278
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE 543
LK+ V+ H + + + +V +GS D T VW + T GH G+WS +
Sbjct: 108 LKSPKVLKGHDDHVITCLQFCGNRIV-SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 166
Query: 544 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 603
D ++I+ S D+T+K+W+ G C+ T GHTS+V R L ++VS D ++
Sbjct: 167 MR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV-RCMHLHE-KRVVSGSRDATLR 222
Query: 604 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
+W + TG+C+ H + V +G D +V +W T
Sbjct: 223 VWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPET 268
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 25/213 (11%)
Query: 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424
E+ + + ++V+D+ + C +VL GH V C+ G+ +V+G+ D V+
Sbjct: 208 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ----YDGR-RVVSGAYDFMVK 262
Query: 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484
+WD E+ C+ GH V ++ F +VSGS D +I+VW +
Sbjct: 263 VWDPETETCLHTLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVWDVE------------ 307
Query: 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWS 541
+ G + + D+++ +G+ D T +W + + T +G H+ +
Sbjct: 308 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 367
Query: 542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574
++F+ VIT+S D T+K+W + G ++
Sbjct: 368 LQFNK--NFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 42 INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101
+ + D + T++G ++ + +L D + S IRVWD+ T C+ + GH
Sbjct: 261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
Query: 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG---HKGVVSSILFHPDTDK 158
GM + +L + AD V +WD+ G C +G H+ V+ + F +K
Sbjct: 319 QSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF----NK 372
Query: 159 SLLFSGSDDATVRVWDLLAKKCVATL 184
+ + + SDD TV++WDL + + L
Sbjct: 373 NFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 76 FSSGHSREIRV---WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVL-VWDV 131
+ S + R+ R+ W LK + KGHD I C G +G+D L VW
Sbjct: 89 WKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVI--TCLQFCGNRIVSGSDDNTLKVWSA 146
Query: 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV 191
G C GH G V S +++ SGS D T++VW+ +C+ TL H S V
Sbjct: 147 VTGKCLRTLVGHTGGVWS----SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV 202
Query: 192 TSMAITSDGSTLISAGRDKVVNLWDLRDYSC 222
M + ++S RD + +WD+ C
Sbjct: 203 RCMHLHE--KRVVSGSRDATLRVWDIETGQC 231
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100
SI + D+ + T+ G + + L D +L S +++WD+ T +CL++ +G
Sbjct: 300 SIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 101 HDGPAIGMAC-HPSGGLLATAGADRKVLVWDVDGG 134
+ + C + + T+ D V +WD+ G
Sbjct: 358 PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 392
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 138/300 (46%), Gaps = 28/300 (9%)
Query: 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424
E+ Y+ + + ++VYD + L+GH V L + G IL V+GS D +VR
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL---KYAHGGIL-VSGSTDRTVR 186
Query: 425 LWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWSF---DGLSDDAEQ 480
+WD + CC V GH V + + K ++V+GS D+T+ VW + D E+
Sbjct: 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 481 ---PM-------NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 530
P+ N V+ H + + V+ + ++V +GS D T VW + + +
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLY 304
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV--LRASFLT 588
GH I+S + + I+AS D TI+IW + +G + T +GHT+ V LR S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--- 361
Query: 589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
+VS ADG ++ W +Y H + A+ ++ GS+ N+++
Sbjct: 362 -DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYN 418
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 27/193 (13%)
Query: 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
++T+ G ++ L +D + + + IRV+D K L GHDG + +
Sbjct: 114 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK-YA 171
Query: 113 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
GG+L + DR V VWD+ G CTH F+GH V + + + +GS D T+ V
Sbjct: 172 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231
Query: 173 WDLLAKKC-----------------------VATLDKHFSRVTSMAITSDGSTLISAGRD 209
W L + V L H + V + ++ G+ ++S D
Sbjct: 232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYD 289
Query: 210 KVVNLWDLRDYSC 222
+ +WD+ C
Sbjct: 290 NTLIVWDVAQMKC 302
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK 158
+GH ++ H G ++ + D ++VWDV C + GH + S ++ D ++
Sbjct: 267 RGHMASVRTVSGH--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY--DHER 322
Query: 159 SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218
S S D T+R+WDL + + TL H + V + ++ L+SA D + WD
Sbjct: 323 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAN 380
Query: 219 DYSCKLT 225
DYS K +
Sbjct: 381 DYSRKFS 387
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 84/215 (39%), Gaps = 30/215 (13%)
Query: 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL 89
D I A + I + D N + G + AL + +L S R +RVWD+
Sbjct: 132 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDI 190
Query: 90 STLKCLRSWKGHDGPA--IGMACHPSGGLLATAGADRKVLVWDV-------------DGG 134
C ++GH+ + + + + + T D + VW + D
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250
Query: 135 FCTH------YF----KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL 184
H YF +GH V ++ H + ++ SGS D T+ VWD+ KC+ L
Sbjct: 251 LVFHTPEENPYFVGVLRGHMASVRTVSGHGN----IVVSGSYDNTLIVWDVAQMKCLYIL 306
Query: 185 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
H R+ S + ISA D + +WDL +
Sbjct: 307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 10/197 (5%)
Query: 27 VSSDGSFIACACGESINIV-DLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
VS G+ + ++ IV D++ + G +D I + + K S+ IR
Sbjct: 276 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 335
Query: 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
+WDL + + + +GH A+ S L +A AD + WD + + F H
Sbjct: 336 IWDLENGELMYTLQGH--TALVGLLRLSDKFLVSAAADGSIRGWDAND--YSRKFSYHHT 391
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV-ATLDKHFSRVTSMAITSDGSTLI 204
+S+I +D ++L SGS++ +++L + K V A + K ++ S + G TL+
Sbjct: 392 NLSAITTFYVSD-NILVSGSENQ-FNIYNLRSGKLVHANILKDADQIWS--VNFKGKTLV 447
Query: 205 SAGRDKVVNLWDLRDYS 221
+A + ++ D+S
Sbjct: 448 AAVEKDGQSFLEILDFS 464
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 136/300 (45%), Gaps = 28/300 (9%)
Query: 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424
E+ Y+ + + ++VYD + L+GH V L + G IL V+GS D +VR
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWAL---KYAHGGIL-VSGSTDRTVR 186
Query: 425 LWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWSF---DGLSDDAEQ 480
+WD + CC V GH V + + K ++V+GS D+T+ VW + D E+
Sbjct: 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 481 ---PM-------NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 530
P+ N V+ H + + V+ + ++V +GS D T VW + +
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRGHXASVRT--VSGHGNIVVSGSYDNTLIVWDVAQXKCLY 304
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV--LRASFLT 588
GH I+S + + I+AS D TI+IW + +G T +GHT+ V LR S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS--- 361
Query: 589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
+VS ADG ++ W +Y H + A+ ++ GS+ N+++
Sbjct: 362 -DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYN 418
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 27/193 (13%)
Query: 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
++T+ G ++ L +D + + + IRV+D K L GHDG + +
Sbjct: 114 RTTLRGHXTSVIT-CLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALK-YA 171
Query: 113 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
GG+L + DR V VWD+ G CTH F+GH V + + + +GS D T+ V
Sbjct: 172 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231
Query: 173 WDLLAKKC-----------------------VATLDKHFSRVTSMAITSDGSTLISAGRD 209
W L + V L H + V + ++ G+ ++S D
Sbjct: 232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRT--VSGHGNIVVSGSYD 289
Query: 210 KVVNLWDLRDYSC 222
+ +WD+ C
Sbjct: 290 NTLIVWDVAQXKC 302
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK 158
+GH ++ H G ++ + D ++VWDV C + GH + S ++ D ++
Sbjct: 267 RGHXASVRTVSGH--GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIY--DHER 322
Query: 159 SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218
S S D T+R+WDL + TL H + V + ++ L+SA D + WD
Sbjct: 323 KRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAN 380
Query: 219 DYSCKLT 225
DYS K +
Sbjct: 381 DYSRKFS 387
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 84/215 (39%), Gaps = 30/215 (13%)
Query: 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL 89
D I A + I + D N + G + AL + +L S R +RVWD+
Sbjct: 132 DNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDI 190
Query: 90 STLKCLRSWKGHDGPA--IGMACHPSGGLLATAGADRKVLVWDV-------------DGG 134
C ++GH+ + + + + + T D + VW + D
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250
Query: 135 FCTH------YF----KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL 184
H YF +GH V ++ H + ++ SGS D T+ VWD+ KC+ L
Sbjct: 251 LVFHTPEENPYFVGVLRGHXASVRTVSGHGN----IVVSGSYDNTLIVWDVAQXKCLYIL 306
Query: 185 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
H R+ S + ISA D + +WDL +
Sbjct: 307 SGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN 341
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 10/197 (5%)
Query: 27 VSSDGSFIACACGESINIV-DLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
VS G+ + ++ IV D++ + G +D I + + K S+ IR
Sbjct: 276 VSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIR 335
Query: 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
+WDL + + +GH A+ S L +A AD + WD + + F H
Sbjct: 336 IWDLENGELXYTLQGH--TALVGLLRLSDKFLVSAAADGSIRGWDAND--YSRKFSYHHT 391
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV-ATLDKHFSRVTSMAITSDGSTLI 204
+S+I +D ++L SGS++ +++L + K V A + K ++ S + G TL+
Sbjct: 392 NLSAITTFYVSD-NILVSGSENQ-FNIYNLRSGKLVHANILKDADQIWS--VNFKGKTLV 447
Query: 205 SAGRDKVVNLWDLRDYS 221
+A + ++ D+S
Sbjct: 448 AAVEKDGQSFLEILDFS 464
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Query: 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG 115
+EG S ++ +ALS + S+ +R+W+L +C + GH + +A P
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 116 LLATAGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
+ + G D + VW+V G C H H VS + F P D ++ SG D V+VW
Sbjct: 123 QIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 174 DLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217
DL + V L H + VTS+ ++ DGS S+ +D V LWDL
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 23/235 (9%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-----SRCCVGVG----TGHMG 442
L GH V L +V+ S+D ++ W S C G+ GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502
V VA S NF VS S DH++++W+ N + + H KD+ S+A
Sbjct: 69 FVSDVALSNN-GNFAVSASWDHSLRLWNL----------QNGQCQYKFLGHTKDVLSVAF 117
Query: 503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSP-VDQVVITASG-DKT 559
+P++ + +G +D VW + RG H + V FSP +D VI + G D
Sbjct: 118 SPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 560 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614
+K+W ++ G + +GHT+ V + G+ S DG+ +LW + GE ++
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 438 TGHMGAVGAVAFSKKLQNF--LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495
TGH G V ++A + + +VS S D T+ W + +E L + + H
Sbjct: 10 TGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRL-EGHSA 68
Query: 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555
++ +A++ N + + S D + +W L + F GH + + SV FSP ++ +++
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 556 GDKTIKIWSISDGSCLKTFE--GHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
D +++W++ G C+ T HT S +R S IVS G D LVK+W + TG
Sbjct: 129 RDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
+ H + + ++ V + A+ D + LW
Sbjct: 188 LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 16/179 (8%)
Query: 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 406
+RL G++ + D+ L + A+ +++++L + C Y GH++ VL + A
Sbjct: 61 RRLEGHSAFVSDVA-LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVL---SVA 116
Query: 407 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQ-NFLVSGSSDH 464
S IV+G +DN++R+W+ + C + G H V V FS L +VSG D+
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDN 176
Query: 465 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523
+KVW +LK H + S+ V+P+ SL + +D A +W L
Sbjct: 177 LVKVWDL----ATGRLVTDLK------GHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 95/257 (36%), Gaps = 75/257 (29%)
Query: 25 LVVSSDGSF-IACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83
+ +S++G+F ++ + S+ + +L N + G + + ++A SPD++ + S G
Sbjct: 73 VALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNA 132
Query: 84 IRVWDLST--------------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129
+RVW++ + C+R D P I + G D V VW
Sbjct: 133 LRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVI-----------VSGGWDNLVKVW 181
Query: 130 DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---------- 179
D+ G KGH V+S+ PD SL S D R+WDL +
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPD--GSLCASSDKDGVARLWDLTKGEALSEMAAGAP 239
Query: 180 -------------CVAT------------------------LDKHFSRVTSMAITSDGST 202
C AT K S+A ++DGST
Sbjct: 240 INQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGST 299
Query: 203 LISAGRDKVVNLWDLRD 219
L S D V+ +W + +
Sbjct: 300 LYSGYTDNVIRVWGVSE 316
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 27/221 (12%)
Query: 28 SSDGSFIACACGESINIVDLSNASIKSTIEGGSDT------------------ITALALS 69
S+DG ++A C ++ + +S+ S+ + + S I ++ S
Sbjct: 73 SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132
Query: 70 PDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129
PD K L + R IR+WD+ K + +GH+ + PSG L + DR V +W
Sbjct: 133 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
Query: 130 DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK--- 186
D+ G C+ G V+++ P D + +GS D VRVWD V LD
Sbjct: 193 DLRTGQCSLTLSIEDG-VTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250
Query: 187 ----HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK 223
H V S+ T DG +++S D+ V LW+L++ + K
Sbjct: 251 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 43/271 (15%)
Query: 405 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 464
C GK L TG++D +R+WD E+R V + GH + ++ + + LVSGS D
Sbjct: 130 CFSPDGKFL-ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDR 187
Query: 465 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVW-- 521
T+++W + ++ + + ++AV+P D + GS DR VW
Sbjct: 188 TVRIWD-----------LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 522 -------RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD------- 567
RL T GHK ++SV F+ Q V++ S D+++K+W++ +
Sbjct: 237 ETGFLVERLDSENESGT--GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294
Query: 568 -----GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622
G+C T+ GH VL + I+S D V W ++G + H +
Sbjct: 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354
Query: 623 IWALAV------GKKTEMFATGGSDALVNLW 647
+ ++AV G + +FATG D +W
Sbjct: 355 VISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 124/267 (46%), Gaps = 33/267 (12%)
Query: 320 LCVTADQQLL-------LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372
+C + D + L L ++ +K+ +IL G+ ++I L + ++ L
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ----GHEQDIYSLDYFPSGDK-LVSG 183
Query: 373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK-ILIVTGSKDNSVRLWDSESR 431
+ V+++DL + CS L+ I + T A+S G I GS D +VR+WDSE+
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLS----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 432 CCVG-------VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD--DAEQPM 482
V GTGH +V +V F++ Q+ +VSGS D ++K+W+ ++ D++ P
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 542
+ + H + S+A ND + +GS+DR W ++ +GH+ + SV
Sbjct: 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358
Query: 543 ------EFSPVDQVVITASGDKTIKIW 563
P V T SGD +IW
Sbjct: 359 AVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 17/224 (7%)
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG-----LSDDA---EQPMNLKAKAVVA 491
H V V FS + +L +G + T DG LSDD+ + P NL + +
Sbjct: 63 HTSVVCCVKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551
+ I S+ +P+ + TG++DR +W + + V+ +GH++ I+S+++ P +
Sbjct: 122 SDLY-IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
++ SGD+T++IW + G C T A G I + D V++W TG
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 612 CIATYDK-------HEDKIWALAVGKKTEMFATGGSDALVNLWH 648
+ D H+D ++++ + + +G D V LW+
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 127/332 (38%), Gaps = 77/332 (23%)
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 206
+ S+ F PD L +G++D +R+WD+ +K V L H + S+ G L+S
Sbjct: 126 IRSVCFSPD--GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 266
D+ V +WDLR C LT+ + V V A+ PG
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSIEDGVTTV-AVSPGDG----------------------K 220
Query: 267 FITVG--ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 324
+I G +R VR+W++++ L E+ S+ DS + Q ++ +
Sbjct: 221 YIAAGSLDRA-VRVWDSETGFLVERLDSENESGTGHKDS---VYSVVFTRDGQSVVSGSL 276
Query: 325 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 384
D+ + L+ L A N + +
Sbjct: 277 DRSVKLWN------------------------------------LQNANNKSDSKTPNSG 300
Query: 385 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444
+ +Y+ GH + VL + A + I++GSKD V WD +S + + GH +V
Sbjct: 301 TCEVTYI--GHKDFVL---SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 355
Query: 445 GAVAFSK-----KLQNFLVSGSSDHTIKVWSF 471
+VA + N +GS D ++W +
Sbjct: 356 ISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 58 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK------------CLRSWKGHDGPA 105
G D++ ++ + D + + S R +++W+L C ++ GH
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 106 IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT----DKSLL 161
+ +A + + + DR VL WD G +GH+ V S+ + + ++
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373
Query: 162 FSGSDDATVRVW 173
+GS D R+W
Sbjct: 374 ATGSGDCKARIW 385
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 25 LVVSSDG-SFIACACGESINIVDLSNASIKS------------TIEGGSDTITALALSPD 71
+V + DG S ++ + S+ + +L NA+ KS T G D + ++A + +
Sbjct: 262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 321
Query: 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAI------GMACHPSGGLLATAGADRK 125
D+ + S R + WD + L +GH I G + P + AT D K
Sbjct: 322 DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 381
Query: 126 VLVW 129
+W
Sbjct: 382 ARIW 385
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 5/188 (2%)
Query: 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG 115
+ G S + + LS D + S E+R+WDL+ R + GH + +A
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 116 LLATAGADRKVLVWDVDGGFCTHYF----KGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171
+ +A DR + +W+ G C + +GH+ VS + F P+T + + S S D TV+
Sbjct: 486 QIVSASRDRTIKLWNTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM 231
VW+L K +TL H V+++A++ DGS S G+D VV LWDL + ++ +
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604
Query: 232 VEAVCAIP 239
+ A+C P
Sbjct: 605 IHALCFSP 612
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 23/230 (10%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD-SESRCCVGVG----TGHMGAVGA 446
+ H+++V + T ++ +IV+ S+D S+ LW ++ GV TGH V
Sbjct: 378 MRAHTDMVTAIATPIDNAD--IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506
V S Q F +SGS D +++W + + V H KD+ S+A + ++
Sbjct: 436 VVLSSDGQ-FALSGSWDGELRLWDL---------AAGVSTRRFVG-HTKDVLSVAFSLDN 484
Query: 507 SLVCTGSQDRTACVWR-LPDLVSVVT--FRGHKRGIWSVEFSP--VDQVVITASGDKTIK 561
+ + S+DRT +W L + ++ GH+ + V FSP + +++AS DKT+K
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
+W++S+ T GHT V + G+ S G DG+V LW + G+
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 12/219 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
G H V A+A + +VS S D +I +W DD + A+ + H
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKL--TKDDKAYGV---AQRRLTGHS 430
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
+ + ++ + +GS D +W L VS F GH + + SV FS ++ +++A
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 555 SGDKTIKIWSISDGSCLKTF----EGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVR 608
S D+TIK+W+ + G C T EGH S +R S T IVS D VK+W +
Sbjct: 491 SRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
+ +T H + +AV + A+GG D +V LW
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 25/185 (13%)
Query: 57 EGGSDTITALALSPD--DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG 114
EG D ++ + SP+ + S+ + ++VW+LS K + GH G +A P G
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
L A+ G D VL+WD+ G + + + V+ ++ F P+ + + +++WD
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPN---RYWLCAATEHGIKIWD 629
Query: 175 LLAKKCV-------------------ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
L +K V A + TS+ ++DGSTL S D V+ +W
Sbjct: 630 LESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
Query: 216 DLRDY 220
+ Y
Sbjct: 690 GIGRY 694
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 27/230 (11%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451
L GHS V + LSS ++GS D +RLWD + GH V +VAFS
Sbjct: 426 LTGHSHFV---EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS- 481
Query: 452 KLQNF-LVSGSSDHTIKVWSFDG-----LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505
L N +VS S D TIK+W+ G +S+ E H ++ + +PN
Sbjct: 482 -LDNRQIVSASRDRTIKLWNTLGECKYTISEGGE------------GHRDWVSCVRFSPN 528
Query: 506 --DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW 563
+ + S D+T VW L + T GH + +V SP + + D + +W
Sbjct: 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Query: 564 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
+++G L + E + SV+ A + + + +K+W + + +
Sbjct: 589 DLAEGKKLYSLEAN--SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIV 636
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 487 KAVVAAHGKDINSLAVA-PNDSLVCTGSQDRTACVWRLP--DLVSVVTFR---GHKRGIW 540
K + AH + ++A N ++ + S+D++ +W+L D V R GH +
Sbjct: 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE 434
Query: 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600
V S Q ++ S D +++W ++ G + F GHT VL +F QIVS D
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR 494
Query: 601 LVKLWTVRTGECIAT 615
+KLW GEC T
Sbjct: 495 TIKLWNT-LGECKYT 508
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 18/207 (8%)
Query: 25 LVVSSDGSF-IACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83
+V+SSDG F ++ + + + DL+ G + + ++A S D++ + S+ R
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 84 IRVWD-LSTLKCLRSWKGHDGPAIGMAC--------HPSGGLLATAGADRKVLVWDVDGG 134
I++W+ L K S +G +G ++C P+ + +A D+ V VW++
Sbjct: 496 IKLWNTLGECKYTIS-EGGEGHRDWVSCVRFSPNTLQPT---IVSASWDKTVKVWNLSNC 551
Query: 135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 194
GH G VS++ PD SL SG D V +WDL K + +L+ + V
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDG--SLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHA 607
Query: 195 AITSDGSTLISAGRDKVVNLWDLRDYS 221
S + A + + +WDL S
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKS 634
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 19/161 (11%)
Query: 32 SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST 91
+ ++ + +++ + +LSN ++ST+ G + ++ +A+SPD L S G + +WDL+
Sbjct: 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
Query: 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK---------- 141
K L S + + I C A + + +WD++ K
Sbjct: 593 GKKLYSLEANS--VIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKA 650
Query: 142 -------GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175
+ V+ + D S LFSG D +RVW +
Sbjct: 651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 138/317 (43%), Gaps = 55/317 (17%)
Query: 182 ATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 240
T+ H VT++A D + +I SA RDK + LW KLT A +
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILW-------KLTKDDKAYGVAQRRLTG 428
Query: 241 GSAF--DSFLSSYNQQTIKKKRRSLEIHFITVGE-RGIVRMWN---ADSACLYEQKSSDV 294
S F D LSS Q F G G +R+W+ S + + DV
Sbjct: 429 HSHFVEDVVLSSDGQ-------------FALSGSWDGELRLWDLAAGVSTRRFVGHTKDV 475
Query: 295 -TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 353
+++F +D N+ ++ + D+ + L+ T+ + + +S+ G+
Sbjct: 476 LSVAFSLD--------------NRQIVSASRDRTIKLWNTL----GECKYTISEGGEGHR 517
Query: 354 EEILDLKFLGEEEQYLAVATNIEQ-VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412
+ + ++F Q V+ + ++ V+V++LS+ LAGH+ V T A+S
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV---STVAVSPDGS 574
Query: 413 LIVTGSKDNSVRLWD-SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471
L +G KD V LWD +E + + + + A+ FS + + +++H IK+W
Sbjct: 575 LCASGGKDGVVLLWDLAEGKKLYSLEANSV--IHALCFSP--NRYWLCAATEHGIKIWDL 630
Query: 472 DGLSDDAEQPMNLKAKA 488
+ S + ++LKA+A
Sbjct: 631 ESKSIVEDLKVDLKAEA 647
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
K I+ GS D +R+++ + V H + ++A + +++SGS D T+K+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWN 125
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 529
++ N + H + +A P D S +G DRT VW L
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 530 VTFR-GHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
T G +RG+ V++ P+ +ITAS D TIKIW SC+ T EGH S+V A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 627
I+S DG +K+W T + T + ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 7/176 (3%)
Query: 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL-RSWKGHDGPAIGMACHPSG 114
E D I ++A+ P + S +++W+ L ++++GH+ + +A +P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 115 -GLLATAGADRKVLVWDVDGGFCTHYFK---GHKGVVSSILFHPDTDKSLLFSGSDDATV 170
A+ DR V VW + G T F G + V+ + ++P DK + + SDD T+
Sbjct: 153 PSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
++WD K CVATL+ H S V+ +IS D + +W+ Y + T+
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482
V +W+ E++ V V A F + +N+++ GS D I+V+++
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY----------- 84
Query: 483 NLKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIW 540
N K V AH I S+AV P V +GS D T +W + ++ TF GH+ +
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144
Query: 541 SVEFSPVDQVVITASG--DKTIKIWSISDGS---CLKTFEGHTSSVLRASFLTRGAQIVS 595
V F+P D ASG D+T+K+WS+ + L T + + + L +++
Sbjct: 145 CVAFNPKDPSTF-ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 596 CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDST 651
D +K+W +T C+AT + H + + AV T + +G D + +W+ ST
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 113/270 (41%), Gaps = 17/270 (6%)
Query: 360 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 419
KF+ + ++ V ++ +++V++ ++ H + + + A+ K +++GS
Sbjct: 62 KFIARK-NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI---AVHPTKPYVLSGSD 117
Query: 420 DNSVRLWDSESRCCV-GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 478
D +V+LW+ E+ + GH V VAF+ K + SG D T+KVWS
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL------G 171
Query: 479 EQPMNLKAKAVVAAHGKDINSLAVA--PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK 536
+ N + + +N + P+ + T S D T +W V T GH
Sbjct: 172 QSTPNF---TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 537 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFLTRGAQIVS 595
+ F P ++I+ S D T+KIW+ S KT G S A+ T ++
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288
Query: 596 CGADGLVKLWTVRTGECIATYDKHEDKIWA 625
G D + ++ E + D +W+
Sbjct: 289 SGFDNGFTVLSLGNDEPTLSLDPVGKLVWS 318
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 7/168 (4%)
Query: 48 SNASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLSTLK---CLRSWKGHDG 103
+N +++ T EG + +A +P D F+SG R ++VW L L + +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS 163
+ P + TA D + +WD C +GH VS +FHP ++ S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL--PIIIS 245
Query: 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG-STLISAGRDK 210
GS+D T+++W+ K TL+ R +A G I++G D
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 36/201 (17%)
Query: 353 NEEILDLKFLGEEEQYLAVATNIEQ------------VQVYDLSSMSCSYVLA-GHSEIV 399
N L+ F G E + VA N + V+V+ L + ++ L G V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
+D L K ++T S D ++++WD +++ CV GHM V F L ++S
Sbjct: 188 NYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIIS 245
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH---------------------GKDIN 498
GS D T+K+W+ + + L+ +A H G D
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305
Query: 499 SLAVAPNDSLVCTGSQDRTAC 519
+L++ P LV +G ++ A
Sbjct: 306 TLSLDPVGKLVWSGGKNAAAS 326
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 52/118 (44%)
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
TF + ++F P + V+T ++IW+ +++ + + V F+ R
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
I+ D ++++ TGE + ++ H D I ++AV +G D V LW+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 2/168 (1%)
Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541
M L K + + + P + V T +W V V + + + + +
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA 60
Query: 542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 601
+F +I S D I++++ + G + FE H + + ++S D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 602 VKLWTVRTGECI-ATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLW 647
VKLW + T++ HE + +A K FA+G D V +W
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 158 KSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217
K+ + GSDD +RV++ + V + H + S+A+ ++S D V LW+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 218 -RDYSCKLTVPTYEMVEAVCAIPP 240
+++ + T +E A P
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNP 150
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 33/74 (44%)
Query: 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100
+I I D S +T+EG ++ P ++ S +++W+ ST K ++
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 101 HDGPAIGMACHPSG 114
+ +A HP+G
Sbjct: 269 GLERSWCIATHPTG 282
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
K I+ GS D +R+++ + V H + ++A + +++SGS D T+K+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWN 125
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 529
++ N + H + +A P D S +G DRT VW L
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 530 VTFR-GHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
T G +RG+ V++ P+ +ITAS D TIKIW SC+ T EGH S+V A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 627
I+S DG +K+W T + T + ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 7/176 (3%)
Query: 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL-RSWKGHDGPAIGMACHPSG 114
E D I ++A+ P + S +++W+ L ++++GH+ + +A +P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 115 -GLLATAGADRKVLVWDVDGGFCTHYFK---GHKGVVSSILFHPDTDKSLLFSGSDDATV 170
A+ DR V VW + G T F G + V+ + ++P DK + + SDD T+
Sbjct: 153 PSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
++WD K CVATL+ H S V+ +IS D + +W+ Y + T+
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482
V LW+ E++ V V A F + +N+++ GS D I+V+++
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY----------- 84
Query: 483 NLKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIW 540
N K V AH I S+AV P V +GS D T +W + ++ TF GH+ +
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144
Query: 541 SVEFSPVDQVVITASG--DKTIKIWSISDGS---CLKTFEGHTSSVLRASFLTRGAQIVS 595
V F+P D ASG D+T+K+WS+ + L T + + + L +++
Sbjct: 145 CVAFNPKDPSTF-ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 596 CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDST 651
D +K+W +T C+AT + H + + AV T + +G D + +W+ ST
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 7/168 (4%)
Query: 48 SNASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDL--STLK-CLRSWKGHDG 103
+N +++ T EG + +A +P D F+SG R ++VW L ST L + +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS 163
+ P + TA D + +WD C +GH VS +FHP ++ S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL--PIIIS 245
Query: 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG-STLISAGRDK 210
GS+D T+++W+ K TL+ R +A G I++G D
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 353 NEEILDLKFLGEEEQYLAVATNIEQ------------VQVYDLSSMSCSYVLA-GHSEIV 399
N L+ F G E + VA N + V+V+ L + ++ L G V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
+D L K ++T S D ++++WD +++ CV GHM V F L ++S
Sbjct: 188 NYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIIS 245
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493
GS D T+K+W+ + + L+ +A H
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH 279
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
TF + ++F P + V+T +++W+ +++ + + V F+ R
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
I+ D ++++ TGE + ++ H D I ++AV +G D V LW+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 2/168 (1%)
Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541
M L K + + + P + V T +W V V + + + + +
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 601
+F +I S D I++++ + G + FE H + + ++S D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 602 VKLWTVRTGECI-ATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLW 647
VKLW + T++ HE + +A K FA+G D V +W
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 158 KSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217
K+ + GSDD +RV++ + V + H + S+A+ ++S D V LW+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 218 -RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK 257
+++ + T +E A P +F S +T+K
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVK 166
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 33/74 (44%)
Query: 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100
+I I D S +T+EG ++ P ++ S +++W+ ST K ++
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 101 HDGPAIGMACHPSG 114
+ +A HP+G
Sbjct: 269 GLERSWCIATHPTG 282
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
K I+ GS D +R+++ + V H + ++A + +++SGS D T+K+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWN 125
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 529
++ N + H + +A P D S +G DRT VW L
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 530 VTFR-GHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
T G +RG+ V++ P+ +ITAS D TIKIW SC+ T EGH S+V A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 627
I+S DG +K+W T + T + ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 7/176 (3%)
Query: 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL-RSWKGHDGPAIGMACHPSG 114
E D I ++A+ P + S +++W+ L ++++GH+ + +A +P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 115 -GLLATAGADRKVLVWDVDGGFCTHYFK---GHKGVVSSILFHPDTDKSLLFSGSDDATV 170
A+ DR V VW + G T F G + V+ + ++P DK + + SDD T+
Sbjct: 153 PSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
++WD K CVATL+ H S V+ +IS D + +W+ Y + T+
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482
V LW+ E++ V V A F + +N+++ GS D I+V+++
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY----------- 84
Query: 483 NLKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIW 540
N K V AH I S+AV P V +GS D T +W + ++ TF GH+ +
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144
Query: 541 SVEFSPVDQVVITASG--DKTIKIWSISDGS---CLKTFEGHTSSVLRASFLTRGAQIVS 595
V F+P D ASG D+T+K+WS+ + L T + + + L +++
Sbjct: 145 CVAFNPKDPSTF-ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 596 CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDST 651
D +K+W +T C+AT + H + + AV T + +G D + +W+ ST
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 7/168 (4%)
Query: 48 SNASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDL--STLK-CLRSWKGHDG 103
+N +++ T EG + +A +P D F+SG R ++VW L ST L + +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS 163
+ P + TA D + +WD C +GH VS +FHP ++ S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL--PIIIS 245
Query: 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG-STLISAGRDK 210
GS+D T+++W+ K TL+ R +A G I++G D
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 353 NEEILDLKFLGEEEQYLAVATNIEQ------------VQVYDLSSMSCSYVLA-GHSEIV 399
N L+ F G E + VA N + V+V+ L + ++ L G V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
+D L K ++T S D ++++WD +++ CV GHM V F L ++S
Sbjct: 188 NYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIIS 245
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493
GS D T+K+W+ + + L+ +A H
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH 279
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
TF + ++F P + V+T +++W+ +++ + + V F+ R
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
I+ D ++++ TGE + ++ H D I ++AV +G D V LW+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 2/168 (1%)
Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541
M L K + + + P + V T +W V V + + + + +
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 601
+F +I S D I++++ + G + FE H + + ++S D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 602 VKLWTVRTGECI-ATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLW 647
VKLW + T++ HE + +A K FA+G D V +W
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 158 KSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217
K+ + GSDD +RV++ + V + H + S+A+ ++S D V LW+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 218 -RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK 257
+++ + T +E A P +F S +T+K
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVK 166
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 33/74 (44%)
Query: 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100
+I I D S +T+EG ++ P ++ S +++W+ ST K ++
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 101 HDGPAIGMACHPSG 114
+ +A HP+G
Sbjct: 269 GLERSWCIATHPTG 282
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
K I+ GS D +R+++ + V H + ++A + +++SGS D T+K+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWN 125
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 529
++ N + H + +A P D S +G DRT VW L
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 530 VTFR-GHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
T G +RG+ V++ P+ +ITAS D TIKIW SC+ T EGH S+V A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 627
I+S DG +K+W T + T + ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 7/176 (3%)
Query: 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL-RSWKGHDGPAIGMACHPSG 114
E D I ++A+ P + S +++W+ L ++++GH+ + +A +P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 115 -GLLATAGADRKVLVWDVDGGFCTHYFK---GHKGVVSSILFHPDTDKSLLFSGSDDATV 170
A+ DR V VW + G T F G + V+ + ++P DK + + SDD T+
Sbjct: 153 PSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
++WD K CVATL+ H S V+ +IS D + +W+ Y + T+
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482
V LW+ E++ V V A F + +N+++ GS D I+V+++
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY----------- 84
Query: 483 NLKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIW 540
N K V AH I S+AV P V +GS D T +W + ++ TF GH+ +
Sbjct: 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144
Query: 541 SVEFSPVDQVVITASG--DKTIKIWSISDGS---CLKTFEGHTSSVLRASFLTRGAQIVS 595
V F+P D ASG D+T+K+WS+ + L T + + + L +++
Sbjct: 145 CVAFNPKDPSTF-ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 596 CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDST 651
D +K+W +T C+AT + H + + AV T + +G D + +W+ ST
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 7/168 (4%)
Query: 48 SNASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDL--STLK-CLRSWKGHDG 103
+N +++ T EG + +A +P D F+SG R ++VW L ST L + +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS 163
+ P + TA D + +WD C +GH VS +FHP ++ S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL--PIIIS 245
Query: 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG-STLISAGRDK 210
GS+D T+++W+ K TL+ R +A G I++G D
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 36/201 (17%)
Query: 353 NEEILDLKFLGEEEQYLAVATNIEQ------------VQVYDLSSMSCSYVLA-GHSEIV 399
N L+ F G E + VA N + V+V+ L + ++ L G V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459
+D L K ++T S D ++++WD +++ CV GHM V F L ++S
Sbjct: 188 NYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIIS 245
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH---------------------GKDIN 498
GS D T+K+W+ + + L+ +A H G D
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305
Query: 499 SLAVAPNDSLVCTGSQDRTAC 519
+L++ P LV +G ++ A
Sbjct: 306 TLSLDPVGKLVWSGGKNAAAS 326
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
TF + ++F P + V+T +++W+ +++ + + V F+ R
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
I+ D ++++ TGE + ++ H D I ++AV +G D V LW+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 2/168 (1%)
Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541
M L K + + + P + V T +W V V + + + + +
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 601
+F +I S D I++++ + G + FE H + + ++S D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 602 VKLWTVRTGECI-ATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLW 647
VKLW + T++ HE + +A K FA+G D V +W
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 158 KSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217
K+ + GSDD +RV++ + V + H + S+A+ ++S D V LW+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 218 -RDYSCKLTVPTYEMVEAVCAIPP 240
+++ + T +E A P
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNP 150
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 33/74 (44%)
Query: 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100
+I I D S +T+EG ++ P ++ S +++W+ ST K ++
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 101 HDGPAIGMACHPSG 114
+ +A HP+G
Sbjct: 269 GLERSWCIATHPTG 282
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 7/200 (3%)
Query: 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA 109
A+ K ++ ++ ++A + + D + ++ +WD+ + + L+S+ GH + +
Sbjct: 144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD 203
Query: 110 CHPS--GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167
PS G + G D+K +VWD+ G C F+ H+ V+S+ ++P D SGSDD
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA--FASGSDD 261
Query: 168 ATVRVWDLLAKKCVATLDKH--FSRVTSMAITSDGSTLISAGRDKVVNLWD-LRDYSCKL 224
AT R++DL A + VA K +S+ + G L + D +N+WD L+ +
Sbjct: 262 ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 321
Query: 225 TVPTYEMVEAVCAIPPGSAF 244
V + P G+AF
Sbjct: 322 LFGHENRVSTLRVSPDGTAF 341
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 115/276 (41%), Gaps = 12/276 (4%)
Query: 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 435
E+V+ M L GH VLC+D C K IV+ S+D V +WDS +
Sbjct: 44 ERVEALGQFVMKTRRTLKGHGNKVLCMDWC---KDKRRIVSSSQDGKVIVWDSFTTNKEH 100
Query: 436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495
T V A A++ + G D+ V+ L+ D + M K K+V A H
Sbjct: 101 AVTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYP---LTFDKNENMAAKKKSV-AMHTN 155
Query: 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD--QVVIT 553
+++ + +D + T S D T +W + + +F GH + ++ +P + ++
Sbjct: 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215
Query: 554 ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
DK +W + G C++ FE H S V + G S D +L+ +R +
Sbjct: 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275
Query: 614 ATYDKHEDKIWALAV--GKKTEMFATGGSDALVNLW 647
A Y K A +V + G +D +N+W
Sbjct: 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 97/256 (37%), Gaps = 12/256 (4%)
Query: 309 AATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368
A PS + C D + +Y +K + K+ V + L +
Sbjct: 111 ACAYAPSGCAIACGGLDNKCSVYPLT--FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428
+ A+ ++D+ S GH VLCLD +G V+G D +WD
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF-VSGGCDKKAMVWDM 227
Query: 429 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488
S CV H V +V + F SGS D T +++ L D E + K
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYPSGDAF-ASGSDDATCRLYD---LRADREVAIYSKESI 283
Query: 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548
+ A +S+ + + L+ G D T VW + V GH+ + ++ SP
Sbjct: 284 IFGA-----SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG 338
Query: 549 QVVITASGDKTIKIWS 564
+ S D T+++W+
Sbjct: 339 TAFCSGSWDHTLRVWA 354
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 25/213 (11%)
Query: 402 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS-KKLQNFLVSG 460
L C+ ++ + I+T S D + LWD ES + GH V + + + N VSG
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 461 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---HGKDINSLAVAPNDSLVCTGSQDRT 517
D VW ++++ V A H D+NS+ P+ +GS D T
Sbjct: 217 GCDKKAMVW-------------DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263
Query: 518 ACVWRLPDL-----VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 572
RL DL V++ + G SV+FS +++ D TI +W + GS +
Sbjct: 264 C---RLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS 320
Query: 573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 605
GH + V G S D +++W
Sbjct: 321 ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 37/216 (17%)
Query: 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMAC-- 110
+ T++G + + + D + + SS ++ VWD T K H A+ M C
Sbjct: 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-----KEH---AVTMPCTW 108
Query: 111 ------HPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVS---SILFHPDTDKSLL 161
PSG +A G D K V+ + F ++ + + S+ H + +
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLT-------FDKNENMAAKKKSVAMHTNYLSACS 161
Query: 162 FSGSD--------DATVRVWDLLAKKCVATLDKHFSRVT--SMAITSDGSTLISAGRDKV 211
F+ SD D T +WD+ + + + + H + V +A + G+T +S G DK
Sbjct: 162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221
Query: 212 VNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDS 246
+WD+R C T+E V +V P G AF S
Sbjct: 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS 257
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
G GH G V ++A S N L+S S D T+ W G DD + + +++ H
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
+ + + + + S D+T +W + + F GHK + SV+ ++I+
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 608
S DKTIK+W+I G CL T GH V + + I+S G D +VK W +
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
+ A + H I L + A+ G D + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 123/295 (41%), Gaps = 48/295 (16%)
Query: 52 IKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLK-----CLRSWKGHDGPA 105
++ T+EG + +T+LA S LL S+ + + W L+ +RS+KGH
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 106 IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK--SLLFS 163
G +A D+ + +WDV G F GHK V S+ D DK S++ S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV----DIDKKASMIIS 124
Query: 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT------SDGSTLISAGRDKVVNLWDL 217
GS D T++VW + +C+ATL H V+ + + D T+ISAG DK+V W+L
Sbjct: 125 GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 218 RDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV 276
+ + + + + A P G+ S G+ G +
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIAS-----------------------AGKDGEI 220
Query: 277 RMWN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330
+WN A +Y + D S ++ AAT G+ + D Q L+
Sbjct: 221 MLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLV 271
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 487 KAVVAAHGKDINSLAV-APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIW 540
+ + H + SLA A +L+ + S+D+T W+L V V +F+GH +
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600
+ ++AS DKT+++W ++ G + F GH S V+ + + I+S D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 601 LVKLWTVRTGECIATYDKHEDKIWALAV--GKKTE----MFATGGSDALVNLWH 648
+K+WT++ G+C+AT H D + + V +K + + G+D +V W+
Sbjct: 130 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 54 STIEGGSDTITALALSPDDK------LLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIG 107
+T+ G +D ++ + + P++K + S+G+ + ++ W+L+ + + GH+
Sbjct: 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 108 MACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167
+ P G L+A+AG D ++++W++ + V S+ F P+ + +
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSPN---RYWLAAATA 257
Query: 168 ATVRVWDLLAKKCVATLDKHFS--------RVTSMAITSDGSTLISAGRDKVVNLWDL 217
++V+ L + V L F+ S+A ++DG TL + D V+ +W +
Sbjct: 258 TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 32 SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST 91
+ I+ + + +L+ I++ G + I L SPD L+ S+G EI +W+L+
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGA--------DRKVLVWDVDGGFCTHYFKGH 143
K + + D +A P+ LA A A D + LV D+ F +
Sbjct: 228 KKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286
Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
VS D LF+G D +RVW ++
Sbjct: 287 PHAVS---LAWSADGQTLFAGYTDNVIRVWQVM 316
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
G GH G V ++A S N L+S S D T+ W G DD + + +++ H
Sbjct: 5 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 59
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
+ + + + + S D+T +W + + F GHK + SV+ ++I+
Sbjct: 60 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 119
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 608
S DKTIK+W+I G CL T GH V + + I+S G D +VK W +
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
+ A + H I L + A+ G D + LW+
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 123/295 (41%), Gaps = 48/295 (16%)
Query: 52 IKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLK-----CLRSWKGHDGPA 105
++ T+EG + +T+LA S LL S+ + + W L+ +RS+KGH
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 106 IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK--SLLFS 163
G +A D+ + +WDV G F GHK V S+ D DK S++ S
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV----DIDKKASMIIS 118
Query: 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT------SDGSTLISAGRDKVVNLWDL 217
GS D T++VW + +C+ATL H V+ + + D T+ISAG DK+V W+L
Sbjct: 119 GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 177
Query: 218 RDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV 276
+ + + + + A P G+ S G+ G +
Sbjct: 178 NQFQIEADFIGHNSNINTLTASPDGTLIAS-----------------------AGKDGEI 214
Query: 277 RMWN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330
+WN A +Y + D S ++ AAT G+ + D Q L+
Sbjct: 215 MLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLV 265
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 487 KAVVAAHGKDINSLAV-APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIW 540
+ + H + SLA A +L+ + S+D+T W+L V V +F+GH +
Sbjct: 4 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 63
Query: 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600
+ ++AS DKT+++W ++ G + F GH S V+ + + I+S D
Sbjct: 64 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 123
Query: 601 LVKLWTVRTGECIATYDKHEDKIWALAV--GKKTE----MFATGGSDALVNLWH 648
+K+WT++ G+C+AT H D + + V +K + + G+D +V W+
Sbjct: 124 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 26/247 (10%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW-----DSESRCCVGVGTGHMGAVGA 446
L GH+ V L T A L+++ S+D ++ W D + V GH V
Sbjct: 7 LEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506
+ + +S S D T+++W D + + Q H D+ S+ +
Sbjct: 65 CTLTAD-GAYALSASWDKTLRLW--DVATGETYQRF--------VGHKSDVMSVDIDKKA 113
Query: 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ------VVITASGDKTI 560
S++ +GS+D+T VW + + T GH + V P ++ +I+A DK +
Sbjct: 114 SMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 172
Query: 561 KIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE 620
K W+++ F GH S++ + G I S G DG + LW + + + T +
Sbjct: 173 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-Q 231
Query: 621 DKIWALA 627
D++++LA
Sbjct: 232 DEVFSLA 238
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 54 STIEGGSDTITALALSPDDK------LLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIG 107
+T+ G +D ++ + + P++K + S+G+ + ++ W+L+ + + GH+
Sbjct: 136 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 195
Query: 108 MACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167
+ P G L+A+AG D ++++W++ + V S+ F P+ + +
Sbjct: 196 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSPN---RYWLAAATA 251
Query: 168 ATVRVWDLLAKKCVATLDKHFS--------RVTSMAITSDGSTLISAGRDKVVNLWDL 217
++V+ L + V L F+ S+A ++DG TL + D V+ +W +
Sbjct: 252 TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 32 SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST 91
+ I+ + + +L+ I++ G + I L SPD L+ S+G EI +W+L+
Sbjct: 162 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Query: 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGA--------DRKVLVWDVDGGFCTHYFKGH 143
K + + D +A P+ LA A A D + LV D+ F +
Sbjct: 222 KKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 280
Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
VS D LF+G D +RVW ++
Sbjct: 281 PHAVS---LAWSADGQTLFAGYTDNVIRVWQVM 310
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
G GH G V ++A S N L+S S D T+ W G DD + + +++ H
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
+ + + + + S D+T +W + + F GHK + SV+ ++I+
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 608
S DKTIK+W+I G CL T GH V + + I+S G D +VK W +
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
+ A + H I L + A+ G D + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 123/295 (41%), Gaps = 48/295 (16%)
Query: 52 IKSTIEGGSDTITALALSPDD-KLLFSSGHSREIRVWDLSTLK-----CLRSWKGHDGPA 105
++ T+EG + +T+LA S LL S+ + + W L+ +RS+KGH
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 106 IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK--SLLFS 163
G +A D+ + +WDV G F GHK V S+ D DK S++ S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV----DIDKKASMIIS 124
Query: 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT------SDGSTLISAGRDKVVNLWDL 217
GS D T++VW + +C+ATL H V+ + + D T+ISAG DK+V W+L
Sbjct: 125 GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 218 RDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV 276
+ + + + + A P G+ S G+ G +
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIAS-----------------------AGKDGEI 220
Query: 277 RMWN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330
+WN A +Y + D S ++ AAT G+ + D Q L+
Sbjct: 221 MLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLV 271
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 487 KAVVAAHGKDINSLAV-APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIW 540
+ + H + SLA A +L+ + S+D+T W+L V V +F+GH +
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600
+ ++AS DKT+++W ++ G + F GH S V+ + + I+S D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 601 LVKLWTVRTGECIATYDKHEDKIWALAV--GKKTE----MFATGGSDALVNLWH 648
+K+WT++ G+C+AT H D + + V +K + + G+D +V W+
Sbjct: 130 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 54 STIEGGSDTITALALSPDDK------LLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIG 107
+T+ G +D ++ + + P++K + S+G+ + ++ W+L+ + + GH+
Sbjct: 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 108 MACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167
+ P G L+A+AG D ++++W++ + V S+ F P+ + +
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSPN---RYWLAAATA 257
Query: 168 ATVRVWDLLAKKCVATLDKHFS--------RVTSMAITSDGSTLISAGRDKVVNLWDL 217
++V+ L + V L F+ S+A ++DG TL + D V+ +W +
Sbjct: 258 TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 32 SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST 91
+ I+ + + +L+ I++ G + I L SPD L+ S+G EI +W+L+
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGA--------DRKVLVWDVDGGFCTHYFKGH 143
K + + D +A P+ LA A A D + LV D+ F +
Sbjct: 228 KKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286
Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
VS D LF+G D +RVW ++
Sbjct: 287 PHAVS---LAWSADGQTLFAGYTDNVIRVWQVM 316
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
G GH G V ++A S N L+S S D T+ W G DD + + +++ H
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
+ + + + + S D+T +W + + F GHK + SV+ ++I+
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 608
S DKTIK+W+I G CL T GH V + + I+S G D +VK W +
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
+ A + H I L + A+ G D + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 123/295 (41%), Gaps = 48/295 (16%)
Query: 52 IKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLK-----CLRSWKGHDGPA 105
++ T+EG + +T+LA S LL S+ + + W L+ +RS+KGH
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 106 IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK--SLLFS 163
G +A D+ + +WDV G F GHK V S+ D DK S++ S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV----DIDKKASMIIS 124
Query: 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT------SDGSTLISAGRDKVVNLWDL 217
GS D T++VW + +C+ATL H V+ + + D T+ISAG DK+V W+L
Sbjct: 125 GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 218 RDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV 276
+ + + + + A P G+ S G+ G +
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIAS-----------------------AGKDGEI 220
Query: 277 RMWN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330
+WN A +Y + D S ++ AAT G+ + D Q L+
Sbjct: 221 MLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLV 271
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 487 KAVVAAHGKDINSLAV-APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIW 540
+ + H + SLA A +L+ + S+D+T W+L V V +F+GH +
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600
+ ++AS DKT+++W ++ G + F GH S V+ + + I+S D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 601 LVKLWTVRTGECIATYDKHEDKIWALAV--GKKTE----MFATGGSDALVNLWH 648
+K+WT++ G+C+AT H D + + V +K + + G+D +V W+
Sbjct: 130 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 26/247 (10%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW-----DSESRCCVGVGTGHMGAVGA 446
L GH+ V L T A L+++ S+D ++ W D + V GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506
+ + +S S D T+++W D + + Q H D+ S+ +
Sbjct: 71 CTLTAD-GAYALSASWDKTLRLW--DVATGETYQRF--------VGHKSDVMSVDIDKKA 119
Query: 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ------VVITASGDKTI 560
S++ +GS+D+T VW + + T GH + V P ++ +I+A DK +
Sbjct: 120 SMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 561 KIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE 620
K W+++ F GH S++ + G I S G DG + LW + + + T +
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-Q 237
Query: 621 DKIWALA 627
D++++LA
Sbjct: 238 DEVFSLA 244
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 82/176 (46%), Gaps = 18/176 (10%)
Query: 54 STIEGGSDTITALALSPDDK------LLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIG 107
+T+ G +D ++ + + P++K + S+G+ + ++ W+L+ + + GH+
Sbjct: 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 108 MACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167
+ P G L+A+AG D ++++W++ + V S+ F P+ + +
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSPN---RYWLAAATA 257
Query: 168 ATVRVWDLLAKKCVATLDKHFS--------RVTSMAITSDGSTLISAGRDKVVNLW 215
++V+ L + V L F+ S+A ++DG TL + D V+ +W
Sbjct: 258 TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 12/150 (8%)
Query: 32 SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST 91
+ I+ + + +L+ I++ G + I L SPD L+ S+G EI +W+L+
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGA--------DRKVLVWDVDGGFCTHYFKGH 143
K + + D +A P+ LA A A D + LV D+ F +
Sbjct: 228 KKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286
Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
VS D LF+G D +RVW
Sbjct: 287 PHAVS---LAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
G GH G V ++A S N L+S S D T+ W G DD + + +++ H
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
+ + + + + S D+T +W + + F GHK + SV+ ++I+
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 608
S DKTIK+W+I G CL T GH V + + I+S G D +VK W +
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
+ A + H I L + A+ G D + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 123/295 (41%), Gaps = 48/295 (16%)
Query: 52 IKSTIEGGSDTITALALSPDD-KLLFSSGHSREIRVWDLSTLK-----CLRSWKGHDGPA 105
++ T+EG + +T+LA S LL S+ + + W L+ +RS+KGH
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 106 IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK--SLLFS 163
G +A D+ + +WDV G F GHK V S+ D DK S++ S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV----DIDKKASMIIS 124
Query: 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT------SDGSTLISAGRDKVVNLWDL 217
GS D T++VW + +C+ATL H V+ + + D T+ISAG DK+V W+L
Sbjct: 125 GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 218 RDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV 276
+ + + + + A P G+ S G+ G +
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIAS-----------------------AGKDGEI 220
Query: 277 RMWN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330
+WN A +Y + D S ++ AAT G+ + D Q L+
Sbjct: 221 MLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLV 271
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 487 KAVVAAHGKDINSLAV-APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIW 540
+ + H + SLA A +L+ + S+D+T W+L V V +F+GH +
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600
+ ++AS DKT+++W ++ G + F GH S V+ + + I+S D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 601 LVKLWTVRTGECIATYDKHEDKIWALAV--GKKTE----MFATGGSDALVNLWH 648
+K+WT++ G+C+AT H D + + V +K + + G+D +V W+
Sbjct: 130 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 54 STIEGGSDTITALALSPDDK------LLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIG 107
+T+ G +D ++ + + P++K + S+G+ + ++ W+L+ + + GH+
Sbjct: 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 108 MACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167
+ P G L+A+AG D ++++W++ + V S+ F P+ + +
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFSPN---RYWLAAATA 257
Query: 168 ATVRVWDLLAKKCVATLDKHFS--------RVTSMAITSDGSTLISAGRDKVVNLWDL 217
++V+ L + V L F+ S+A ++DG TL + D V+ +W +
Sbjct: 258 TGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 32 SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST 91
+ I+ + + +L+ I++ G + I L SPD L+ S+G EI +W+L+
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGA--------DRKVLVWDVDGGFCTHYFKGH 143
K + + D +A P+ LA A A D + LV D+ F +
Sbjct: 228 KKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAE 286
Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
VS D LF+G D +RVW ++
Sbjct: 287 PHAVS---LAWSADGQTLFAGYTDNVIRVWQVM 316
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 20/233 (8%)
Query: 418 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477
S+D +VRLW + + V G + +V + + + L+ G D I +
Sbjct: 36 SRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTXIN--GVPLFATS 92
Query: 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR 537
E P+ + H ++ SL+ D +V +GS D+TA VW+ LV + H
Sbjct: 93 GEDPL-----YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLV--YNLQAHNA 143
Query: 538 GIWS---VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
+W V FS + +TAS DKTIK+W + +KTF G + V+R + +
Sbjct: 144 SVWDAKVVSFS--ENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI 199
Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
SC DGL+KL TG+ + TY+ HE ++ + + ++ + G D V +W
Sbjct: 200 SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSC-GEDRTVRIW 251
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREI 84
L V DG FI+C+ I +VD + T EG + + L P+ ++ S G R +
Sbjct: 190 LAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIV-SCGEDRTV 248
Query: 85 RVW 87
R+W
Sbjct: 249 RIW 251
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 12/174 (6%)
Query: 67 ALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAI-GMACHPSGGLLATAGADRK 125
+LS D ++ S + +VW +L + + + H+ S TA AD+
Sbjct: 109 SLSFQDGVVISGSWDKTAKVWKEGSL--VYNLQAHNASVWDAKVVSFSENKFLTASADKT 166
Query: 126 VLVWDVDGGFCTHYFKGHKGVVSSILFH-PDTDKSLLFSGSDDATVRVWDLLAKKCVATL 184
+ +W D K G+ + ++ H D S S+D +++ D + T
Sbjct: 167 IKLWQND-----KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTY 221
Query: 185 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK--LTVPTYEMVEAVC 236
+ H S V + + +G ++S G D+ V +W + S K +T+P + C
Sbjct: 222 EGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDC 274
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEG-GSDTITALALSPDDKLLFSSGHSRE 83
+V S+ F+ + ++I + N + T G +D + LA+ DD S +
Sbjct: 150 VVSFSENKFLTASADKTIKL--WQNDKVIKTFSGIHNDVVRHLAV-VDDGHFISCSNDGL 206
Query: 84 IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG 134
I++ D T LR+++GH+ + P+G ++ + G DR V +W + G
Sbjct: 207 IKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIV-SCGEDRTVRIWSKENG 256
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 10/224 (4%)
Query: 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 487
+E G GH G V +A + + + ++S S D TI +W L+ D E + +
Sbjct: 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK---LTRD-ETNYGIPQR 80
Query: 488 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 547
A+ H ++ + ++ + +GS D T +W L + F GH + + SV FS
Sbjct: 81 AL-RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 548 DQVVITASGDKTIKIWSISDGSCLKTF--EGHTS--SVLRASFLTRGAQIVSCGADGLVK 603
++ +++ S DKTIK+W+ + G C T E H+ S +R S + IVSCG D LVK
Sbjct: 140 NRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 604 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
+W + + + H + + V + A+GG D LW
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 4/197 (2%)
Query: 46 DLSNASI-KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP 104
D +N I + + G S ++ + +S D + S +R+WDL+T R + GH
Sbjct: 71 DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 130
Query: 105 AIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLF 162
+ +A + + D+ + +W+ G C + + H VS + F P++ ++
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189
Query: 163 SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 222
S D V+VW+L K H + ++ ++ DGS S G+D LWDL +
Sbjct: 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249
Query: 223 KLTVPTYEMVEAVCAIP 239
T+ +++ A+C P
Sbjct: 250 LYTLDGGDIINALCFSP 266
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 18/224 (8%)
Query: 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 403
I + L G++ + D+ + + Q+ + ++++DL++ + + GH++ VL +
Sbjct: 77 IPQRALRGHSHFVSDV-VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV- 134
Query: 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQN-FLVSGS 461
A SS IV+GS+D +++LW++ C V H V V FS N +VS
Sbjct: 135 --AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192
Query: 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521
D +KVW+ N K K H +N++ V+P+ SL +G +D A +W
Sbjct: 193 WDKLVKVWNL----------ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Query: 522 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565
L + + T G I ++ FSP + A+G +IKIW +
Sbjct: 243 DLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATG-PSIKIWDL 284
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 11/175 (6%)
Query: 484 LKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKR 537
+ + + H + +A P ++ + S+D+T +W+L + RGH
Sbjct: 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 87
Query: 538 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 597
+ V S Q ++ S D T+++W ++ G+ + F GHT VL +F + QIVS
Sbjct: 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 147
Query: 598 ADGLVKLWTVRTGECIATYDKHEDKIWALAV----GKKTEMFATGGSDALVNLWH 648
D +KLW G C T W V + + G D LV +W+
Sbjct: 148 RDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 57 EGGSDTITALALSPD--DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG 114
E S+ ++ + SP+ + ++ S G + ++VW+L+ K + GH G + P G
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227
Query: 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
L A+ G D + ++WD++ G + G +++++ F P+ + ++++WD
Sbjct: 228 SLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPN---RYWLCAATGPSIKIWD 283
Query: 175 LLAKKCVATLDKHF---------SRVTSMAITSDGSTLISAGRDKVVNLWDL 217
L K V L + + TS+A ++DG TL + D +V +W +
Sbjct: 284 LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 93/213 (43%), Gaps = 19/213 (8%)
Query: 413 LIVTGSKDNSVRLWD-SESRCCVGVGT----GHMGAVGAVAFSKKLQNFLVSGSSDHTIK 467
+I++ S+D ++ +W + G+ GH V V S Q F +SGS D T++
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ-FALSGSWDGTLR 111
Query: 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 527
+W H KD+ S+A + ++ + +GS+D+T +W +
Sbjct: 112 LWDL----------TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161
Query: 528 S-VVTFRGHKRGIWSVEFSP--VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 584
V H + V FSP + ++++ DK +K+W++++ GHT +
Sbjct: 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Query: 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
+ G+ S G DG LW + G+ + T D
Sbjct: 222 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD 254
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 13/183 (7%)
Query: 51 SIKSTIEGGSDTITALALSPD-DKLLFSSGHSREIRVWDLSTLKC-----LRSWKGHDGP 104
+++ T++G + +T +A +P ++ S+ + I +W L+ + R+ +GH
Sbjct: 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 88
Query: 105 AIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG 164
+ G + D + +WD+ G T F GH V S+ F D + + SG
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ--IVSG 146
Query: 165 SDDATVRVWDLLAKKCVATLDKHFSRVTS---MAITSDGSTLISAGRDKVVNLWDLRDYS 221
S D T+++W+ L D+ S S + S ++S G DK+V +W+L +
Sbjct: 147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-- 204
Query: 222 CKL 224
CKL
Sbjct: 205 CKL 207
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 9/155 (5%)
Query: 28 SSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
SS+ ++C + + + +L+N +K+ G + + + +SPD L S G + +W
Sbjct: 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVV 147
DL+ K L + G G I C A + +WD++G K
Sbjct: 243 DLNEGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIST 300
Query: 148 SSILFHPD-------TDKSLLFSGSDDATVRVWDL 175
SS P D LF+G D VRVW +
Sbjct: 301 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 10/224 (4%)
Query: 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 487
+E G GH G V +A + + + ++S S D TI +W L+ D E + +
Sbjct: 2 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK---LTRD-ETNYGIPQR 57
Query: 488 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 547
A+ H ++ + ++ + +GS D T +W L + F GH + + SV FS
Sbjct: 58 AL-RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 548 DQVVITASGDKTIKIWSISDGSCLKTF--EGHTS--SVLRASFLTRGAQIVSCGADGLVK 603
++ +++ S DKTIK+W+ + G C T E H+ S +R S + IVSCG D LVK
Sbjct: 117 NRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 604 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
+W + + + H + + V + A+GG D LW
Sbjct: 176 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 4/197 (2%)
Query: 46 DLSNASI-KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP 104
D +N I + + G S ++ + +S D + S +R+WDL+T R + GH
Sbjct: 48 DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 107
Query: 105 AIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLF 162
+ +A + + D+ + +W+ G C + + H VS + F P++ ++
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCKYTVQDESHSEWVSCVRFSPNSSNPIIV 166
Query: 163 SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 222
S D V+VW+L K H + ++ ++ DGS S G+D LWDL +
Sbjct: 167 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 226
Query: 223 KLTVPTYEMVEAVCAIP 239
T+ +++ A+C P
Sbjct: 227 LYTLDGGDIINALCFSP 243
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 18/224 (8%)
Query: 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 403
I + L G++ + D+ + + Q+ + ++++DL++ + + GH++ VL +
Sbjct: 54 IPQRALRGHSHFVSDV-VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV- 111
Query: 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQN-FLVSGS 461
A SS IV+GS+D +++LW++ C V H V V FS N +VS
Sbjct: 112 --AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 169
Query: 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521
D +KVW+ N K K H +N++ V+P+ SL +G +D A +W
Sbjct: 170 WDKLVKVWNL----------ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Query: 522 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565
L + + T G I ++ FSP + A+G +IKIW +
Sbjct: 220 DLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATG-PSIKIWDL 261
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 11/175 (6%)
Query: 484 LKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKR 537
+ + + H + +A P ++ + S+D+T +W+L + RGH
Sbjct: 5 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 64
Query: 538 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 597
+ V S Q ++ S D T+++W ++ G+ + F GHT VL +F + QIVS
Sbjct: 65 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 124
Query: 598 ADGLVKLWTVRTGECIATYDKHEDKIWALAV----GKKTEMFATGGSDALVNLWH 648
D +KLW G C T W V + + G D LV +W+
Sbjct: 125 RDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 57 EGGSDTITALALSPD--DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG 114
E S+ ++ + SP+ + ++ S G + ++VW+L+ K + GH G + P G
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
L A+ G D + ++WD++ G + G +++++ F P+ + ++++WD
Sbjct: 205 SLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPN---RYWLCAATGPSIKIWD 260
Query: 175 LLAKKCVATLDKHF---------SRVTSMAITSDGSTLISAGRDKVVNLWDL 217
L K V L + + TS+A ++DG TL + D +V +W +
Sbjct: 261 LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 93/213 (43%), Gaps = 19/213 (8%)
Query: 413 LIVTGSKDNSVRLWD-SESRCCVGVGT----GHMGAVGAVAFSKKLQNFLVSGSSDHTIK 467
+I++ S+D ++ +W + G+ GH V V S Q F +SGS D T++
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ-FALSGSWDGTLR 88
Query: 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 527
+W H KD+ S+A + ++ + +GS+D+T +W +
Sbjct: 89 LWDL----------TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 138
Query: 528 S-VVTFRGHKRGIWSVEFSP--VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 584
V H + V FSP + ++++ DK +K+W++++ GHT +
Sbjct: 139 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Query: 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
+ G+ S G DG LW + G+ + T D
Sbjct: 199 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD 231
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 13/183 (7%)
Query: 51 SIKSTIEGGSDTITALALSPD-DKLLFSSGHSREIRVWDLSTLKC-----LRSWKGHDGP 104
+++ T++G + +T +A +P ++ S+ + I +W L+ + R+ +GH
Sbjct: 6 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 65
Query: 105 AIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG 164
+ G + D + +WD+ G T F GH V S+ F D + + SG
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ--IVSG 123
Query: 165 SDDATVRVWDLLAKKCVATLDKHFSRVTS---MAITSDGSTLISAGRDKVVNLWDLRDYS 221
S D T+++W+ L D+ S S + S ++S G DK+V +W+L +
Sbjct: 124 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-- 181
Query: 222 CKL 224
CKL
Sbjct: 182 CKL 184
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 9/155 (5%)
Query: 28 SSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87
SS+ ++C + + + +L+N +K+ G + + + +SPD L S G + +W
Sbjct: 160 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Query: 88 DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVV 147
DL+ K L + G G I C A + +WD++G K
Sbjct: 220 DLNEGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIST 277
Query: 148 SSILFHPD-------TDKSLLFSGSDDATVRVWDL 175
SS P D LF+G D VRVW +
Sbjct: 278 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 12/220 (5%)
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494
G GH G V ++A S N L+S S D T+ W G DD + + +++ H
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
+ + + + + S D+T +W + + F GHK + SV+ +I+
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISG 125
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 608
S DKTIK+W+I G CL T GH V + + I+S G D VK W +
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
+ A + H I L + A+ G D + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 120/295 (40%), Gaps = 48/295 (16%)
Query: 52 IKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLK-----CLRSWKGHDGPA 105
++ T+EG + +T+LA S LL S+ + + W L+ +RS+KGH
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 106 IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK--SLLFS 163
G +A D+ + +WDV G F GHK V S+ D DK S + S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSV----DIDKKASXIIS 124
Query: 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT------SDGSTLISAGRDKVVNLWDL 217
GS D T++VW + +C+ATL H V+ + + D T+ISAG DK V W+L
Sbjct: 125 GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL 183
Query: 218 RDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV 276
+ + + + + A P G+ S G+ G +
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIAS-----------------------AGKDGEI 220
Query: 277 RMWN-ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330
+WN A Y + D S ++ AAT G+ + D Q L+
Sbjct: 221 XLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLV 271
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 487 KAVVAAHGKDINSLAV-APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIW 540
+ + H + SLA A +L+ + S+D+T W+L V V +F+GH +
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600
+ ++AS DKT+++W ++ G + F GH S V + + I+S D
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDK 129
Query: 601 LVKLWTVRTGECIATYDKHEDKI 623
+K+WT++ G+C+AT H D +
Sbjct: 130 TIKVWTIK-GQCLATLLGHNDWV 151
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 105/247 (42%), Gaps = 26/247 (10%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW-----DSESRCCVGVGTGHMGAVGA 446
L GH+ V L T A L+++ S+D ++ W D + V GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506
+ + +S S D T+++W D + + Q H D+ S+ +
Sbjct: 71 CTLTAD-GAYALSASWDKTLRLW--DVATGETYQRF--------VGHKSDVXSVDIDKKA 119
Query: 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ------VVITASGDKTI 560
S + +GS+D+T VW + + T GH + V P ++ +I+A DK +
Sbjct: 120 SXIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXV 178
Query: 561 KIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE 620
K W+++ F GH S++ + G I S G DG + LW + + T +
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA-Q 237
Query: 621 DKIWALA 627
D++++LA
Sbjct: 238 DEVFSLA 244
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 54 STIEGGSDTITALALSPDDK------LLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIG 107
+T+ G +D ++ + + P++K + S+G+ + ++ W+L+ + + GH+
Sbjct: 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINT 201
Query: 108 MACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167
+ P G L+A+AG D ++ +W++ + V S + F P+ + +
Sbjct: 202 LTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFS-LAFSPN---RYWLAAATA 257
Query: 168 ATVRVWDLLAKKCVATLDKHFS--------RVTSMAITSDGSTLISAGRDKVVNLWDL 217
++V+ L + V L F+ S+A ++DG TL + D V+ +W +
Sbjct: 258 TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 12/152 (7%)
Query: 32 SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST 91
+ I+ + + +L+ I++ G + I L SPD L+ S+G EI +W+L+
Sbjct: 168 TIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
Query: 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGA--------DRKVLVWDVDGGFCTHYFKGH 143
K + D +A P+ LA A A D + LV D+ F +
Sbjct: 228 KKAXYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286
Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175
VS D LF+G D +RVW +
Sbjct: 287 PHAVS---LAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 123/263 (46%), Gaps = 16/263 (6%)
Query: 386 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAV 444
+ + L GH V+ +D +S + + S D +RLWD E+ + + G + A
Sbjct: 70 LDLQWSLEGHQLGVVSVD---ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW 126
Query: 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504
+AFS Q +L +G+ H KV F S E ++ + GK I S+A +P
Sbjct: 127 -TLAFSPDSQ-YLATGT--HVGKVNIFGVESGKKEYSLDTR--------GKFILSIAYSP 174
Query: 505 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564
+ + +G+ D ++ + + T GH I S+ FSP Q+++TAS D IKI+
Sbjct: 175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
Query: 565 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW 624
+ + T GH S VL +F VS +D VK+W V T C+ T+ H+D++W
Sbjct: 235 VQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW 294
Query: 625 ALAVGKKTEMFATGGSDALVNLW 647
+ + G D ++++
Sbjct: 295 GVKYNGNGSKIVSVGDDQEIHIY 317
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 3/193 (1%)
Query: 25 LVVSSDGSFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83
L S D ++A +NI + + + +++ I ++A SPD K L S
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187
Query: 84 IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH 143
I ++D++T K L + +GH P + P LL TA D + ++DV GH
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL 203
V ++ F P D + S S D +V+VWD+ + CV T H +V + +GS +
Sbjct: 248 ASWVLNVAFCP--DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKI 305
Query: 204 ISAGRDKVVNLWD 216
+S G D+ ++++D
Sbjct: 306 VSVGDDQEIHIYD 318
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 2/181 (1%)
Query: 42 INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101
I + DL N +I+ G LA SPD + L + H ++ ++ + + K S
Sbjct: 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR 163
Query: 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLL 161
+ +A P G LA+ D + ++D+ G H +GH + S+ F PD+ LL
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS--QLL 221
Query: 162 FSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS 221
+ SDD ++++D+ TL H S V ++A D + +S+ DK V +WD+ +
Sbjct: 222 VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281
Query: 222 C 222
C
Sbjct: 282 C 282
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 15/217 (6%)
Query: 414 IVTGSKDNSVRLWD-SESRCCVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471
+VTGS D+ V++W + R + GH V +V S L S S D I++W
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIRLWDL 109
Query: 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 531
+ + +Q ++ A V D +LA +P+ + TG+ ++ + +
Sbjct: 110 E----NGKQIKSIDAGPV------DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 159
Query: 532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 591
+ I S+ +SP + + + + D I I+ I+ G L T EGH + +F
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219
Query: 592 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 628
+V+ DG +K++ V+ T H W L V
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLNV 254
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
Query: 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACH 111
++ ++EG + ++ +S + SS IR+WDL K ++S A +A
Sbjct: 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 131
Query: 112 PSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171
P LAT KV ++ V+ G + + SI + P D L SG+ D +
Sbjct: 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP--DGKYLASGAIDGIIN 189
Query: 172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218
++D+ K + TL+ H + S+ + D L++A D + ++D++
Sbjct: 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 533 RGHKRGIWSVEFS----PVDQVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASF 586
+ H IWSV + + V+T S D +K+W D + EGH V+
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 646
S D ++LW + G+ I + D W LA ++ ATG VN+
Sbjct: 89 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 72/179 (40%), Gaps = 10/179 (5%)
Query: 84 IRVWDLSTLKCLRSW--KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK 141
++VW + W +GH + + + + A++ D + +WD++ G
Sbjct: 60 VKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID 119
Query: 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS 201
++ F PD+ L +G+ V ++ + + K +LD + S+A + DG
Sbjct: 120 AGPVDAWTLAFSPDS--QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK 177
Query: 202 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF------DSFLSSYNQQ 254
L S D ++N++D+ T+ + M P S D ++ Y+ Q
Sbjct: 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT 404
L L G+ I L F + Q L A++ +++YD+ + + L+GH+ VL +
Sbjct: 198 LLHTLEGHAMPIRSLTF-SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
Query: 405 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 450
C + V+ S D SV++WD +R CV H V V ++
Sbjct: 257 CPDDTH---FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN 299
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 17/208 (8%)
Query: 406 ALSSGKILIVTGSKDNSVRLWDSE--SRCCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSS 462
A + L+ + D +R+W +E S C V GH V VA+S N+L S S
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASF 81
Query: 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522
D T +W + DD E L+ H ++ S+A AP+ +L+ T S+D++ VW
Sbjct: 82 DATTCIWKKN--QDDFECVTTLEG------HENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 523 LPD---LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW--SISDGSCLKTFEGH 577
+ + V H + + V + P +++ +AS D T+K++ D C T EGH
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH 193
Query: 578 TSSVLRASFLTRGAQIVSCGADGLVKLW 605
S+V +F G ++ SC D V++W
Sbjct: 194 ESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 116/290 (40%), Gaps = 18/290 (6%)
Query: 57 EGGSDTITALALSPDDKLLFSSGHSREIRVW--DLSTLKCLRSWKGHDGPAIGMACHPSG 114
EG T+ +A SP L S+ +W + +C+ + +GH+ +A PSG
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117
Query: 115 GLLATAGADRKVLVWDVDGG---FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171
LLAT D+ V VW+VD C H V +++HP + LL S S D TV+
Sbjct: 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP--SQELLASASYDDTVK 175
Query: 172 VWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY 229
++ C ATL+ H S V S+A G L S D+ V +W R Y +P
Sbjct: 176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW--RQY-----LPGN 228
Query: 230 EMVEAVCAIPPGSAFDSFLSSYNQQTIKK-KRRSLEIHFITVGERGIVRMWNADSACLYE 288
E A P LS ++ +TI L T +R++ D +
Sbjct: 229 EQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ 288
Query: 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE 338
Q + +T S+ P GLL +D + + + PE
Sbjct: 289 QPTFSLTAHLHQAHSQ-DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 16/200 (8%)
Query: 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQ 514
L S D I++W +G S K+V++ H + + +A +P + + + S
Sbjct: 30 LLASCGGDRRIRIWGTEGDS--------WICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 515 DRTACVWR--LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---S 569
D T C+W+ D V T GH+ + SV ++P ++ T S DK++ +W + +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 570 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIATYDKHEDKIWALA 627
C+ HT V + + S D VKL+ + C AT + HE +W+LA
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 628 VGKKTEMFATGGSDALVNLW 647
+ A+ D V +W
Sbjct: 202 FDPSGQRLASCSDDRTVRIW 221
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 33/239 (13%)
Query: 385 SMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW--DSESRCCVGVGTGHM 441
S C VL+ GH V A S + + S D + +W + + CV GH
Sbjct: 49 SWICKSVLSEGHQRTVR---KVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE 105
Query: 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501
V +VA++ N L + S D ++ VW D + + +V+ +H +D+ +
Sbjct: 106 NEVKSVAWAPS-GNLLATCSRDKSVWVWEVD-------EEDEYECVSVLNSHTQDVKHVV 157
Query: 502 VAPNDSLVCTGSQDRTACVWRLP--DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
P+ L+ + S D T ++R D V T GH+ +WS+ F P Q + + S D+T
Sbjct: 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT 217
Query: 560 IKIW-------------SISDGS--CLKTFEG-HTSSVLRASFLT-RGAQIVSCGADGL 601
++IW S SD S C+ T G H+ ++ ++ GA +CG D +
Sbjct: 218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI 276
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 108 MACHPSGGLLATAGADRKVLVWDVDGG--FCTHYF-KGHKGVVSSILFHPDTDKSLLFSG 164
+A +P+G LLA+ G DR++ +W +G C +GH+ V + + P + L S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASA 79
Query: 165 SDDATVRVWDLLAK--KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL---RD 219
S DAT +W +CV TL+ H + V S+A G+ L + RDK V +W++ +
Sbjct: 80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139
Query: 220 YSC 222
Y C
Sbjct: 140 YEC 142
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL---STLKCLRSWKGHDGPAIGMAC 110
+T+EG + + ++A +P LL + + + VW++ +C+ H +
Sbjct: 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158
Query: 111 HPSGGLLATAGADRKVLVW--DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
HPS LLA+A D V ++ + D C +GH+ V S+ F P + L S SDD
Sbjct: 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR--LASCSDDR 216
Query: 169 TVRVW 173
TVR+W
Sbjct: 217 TVRIW 221
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 107/276 (38%), Gaps = 43/276 (15%)
Query: 367 QYLAVATNIEQVQVY--DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424
YLA A+ ++ + C L GH V + A + L+ T S+D SV
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEV---KSVAWAPSGNLLATCSRDKSVW 130
Query: 425 LWD---SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481
+W+ + CV V H V V + Q L S S D T+K++ E+
Sbjct: 131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYR--------EEE 181
Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL---------------PDL 526
+ A + H + SLA P+ + + S DRT +WR P
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241
Query: 527 VSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK--TF-------EG 576
+ T G H R I+ + + + + TA GD I+++ S + TF +
Sbjct: 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA 301
Query: 577 HTSSVLRASFLTRGAQIV-SCGADGLVKLWTVRTGE 611
H+ V ++ + ++ SC DG V W + E
Sbjct: 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 540 WSVEFSPVDQVVITASGDKTIKIWSISDGS--CLKTF-EGHTSSVLRASFLTRGAQIVSC 596
W + ++P ++ + GD+ I+IW S C EGH +V + ++ G + S
Sbjct: 20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79
Query: 597 GADGLVKLWTVRTG--ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
D +W EC+ T + HE+++ ++A + AT D V +W
Sbjct: 80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 26/145 (17%)
Query: 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL---------------STLKCLRSW 98
+T+EG T+ +LA P + L S R +R+W + KC+ +
Sbjct: 188 ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247
Query: 99 KG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG---------FCTHYFKGHKGVVS 148
G H +A G LATA D + V+ D H + H V+
Sbjct: 248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307
Query: 149 SILFHPDTDKSLLFSGSDDATVRVW 173
+ ++P + LL S SDD V W
Sbjct: 308 CVAWNP-KEPGLLASCSDDGEVAFW 331
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 23/231 (9%)
Query: 435 GVGTGHMGAVGAV--AFSKKLQN---FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489
G+ GH V ++ FS+K L+SGS D T+ +W ++ + KA+
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL--YEEEQNGYFGIPHKAL 72
Query: 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 549
H ++ LA++ + + S D+T +W L + F GH+ ++SV FSP ++
Sbjct: 73 TG-HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 550 VVITASGDKTIKIWSISDGSCLKTF---EGHTS--SVLRASFLTRGAQIV--------SC 596
+++A ++ IK+W+I G C + E H+ S +R S + + A V S
Sbjct: 132 QILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 597 GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
G DG +K+W + T+ HE + L++ + ATGG D + +W
Sbjct: 191 GWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG 115
+ G + ++ LALS ++ SS + +R+WDL T + + GH +A P
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 116 LLATAGADRKVLVWDVDG--GFCTHYFKGHKGVVSSILFHP---DTDKSLLF-----SGS 165
+ +AGA+R++ +W++ G F + + H VS + + P +K F S
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 166 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 225
D ++VW+ + T H S V ++I+ +G + + G+DK + +WD+ + LT
Sbjct: 192 WDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN----LT 246
Query: 226 VPTYEM 231
P E
Sbjct: 247 YPQREF 252
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 27/201 (13%)
Query: 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVA------PNDSLVCTGSQDRTACVWRLPDLV 527
++D++ + + + ++ H + S+ + ++ +GS+D+T +W+L +
Sbjct: 1 MADNSSLDIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEE 60
Query: 528 SVVTF-------RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS 580
F GH + + S + I++S DKT+++W + G+ K F GH S
Sbjct: 61 QNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE 120
Query: 581 VLRASFLTRGAQIVSCGADGLVKLWTVRTGEC-IATYDKHEDKIW------------ALA 627
V +F QI+S GA+ +KLW + GEC ++ +K W A
Sbjct: 121 VYSVAFSPDNRQILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANK 179
Query: 628 VGKKTEMFATGGSDALVNLWH 648
V FA+ G D + +W+
Sbjct: 180 VQPFAPYFASVGWDGRLKVWN 200
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 111/259 (42%), Gaps = 29/259 (11%)
Query: 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ- 377
L+ + D+ ++++ E + I K L G+N + DL +E A++++ ++
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL--SQENCFAISSSWDKT 99
Query: 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD--SESRCCVG 435
++++DL + + GH V + A S I++ + ++LW+ E +
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVY---SVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 436 VGTGHMGAVGAVAFS------KKLQNF---LVSGSSDHTIKVWSFDGLSDDAEQPMNLKA 486
H V V +S K+Q F S D +KVW+ N +
Sbjct: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-----------TNFQI 205
Query: 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP 546
+ AH ++N L+++PN + TG +D+ +W + +L I + F+P
Sbjct: 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP 265
Query: 547 VDQVVITASGDKTIKIWSI 565
Q V + D+ +KI+++
Sbjct: 266 KLQWVAVGT-DQGVKIFNL 283
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/294 (20%), Positives = 126/294 (42%), Gaps = 45/294 (15%)
Query: 116 LLATAGADRKVLVWDVDGGFCTHYF-------KGHKGVVSSILFHPDTDKSLLFSGSDDA 168
+L + D+ V++W + YF GH VS + + S S D
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL--SQENCFAISSSWDK 98
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228
T+R+WDL H S V S+A + D ++SAG ++ + LW++ CK +
Sbjct: 99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAE 157
Query: 229 YE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287
E + V + + + S N K + +F +VG G +++WN + Y
Sbjct: 158 KENHSDWVSCV----RYSPIMKSAN------KVQPFAPYFASVGWDGRLKVWNTNFQIRY 207
Query: 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV--PEKKMELIL 345
K+ + ++ ++ P+ + + D++LL++ + + P+++ +
Sbjct: 208 TFKAHESNVNH-----------LSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGS 256
Query: 346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
+ + +N ++ Q++AV T+ + V++++L + S + V +E +
Sbjct: 257 TINQIAFNPKL----------QWVAVGTD-QGVKIFNLMTQSKAPVCTIEAEPI 299
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 28/171 (16%)
Query: 25 LVVSSDGSF-IACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83
L +S + F I+ + +++ + DL + G + ++A SPD++ + S+G RE
Sbjct: 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE 141
Query: 84 IRVWDL---------------STLKCLRSWKGHDGPAIGMA--CHPSGGLLATAGADRKV 126
I++W++ + C+R P + A P A+ G D ++
Sbjct: 142 IKLWNILGECKFSSAEKENHSDWVSCVRY-----SPIMKSANKVQPFAPYFASVGWDGRL 196
Query: 127 LVWDVDGGFCTHY-FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
VW+ + F Y FK H+ V+ + P+ + +G D + +WD+L
Sbjct: 197 KVWNTN--FQIRYTFKAHESNVNHLSISPNG--KYIATGGKDKKLLIWDIL 243
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 48 SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL 92
+N I+ T + + L++SP+ K + + G +++ +WD+ L
Sbjct: 201 TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 31 GSFIACACGESI-NIVDL----SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
G+++AC ++I +I +L N + + G + ++ D++++ SSG +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCA 167
Query: 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
+WD+ T + ++ GH G + ++ P L + D +WDV G C F GH+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTL 203
+++I F P+ + +GSDDAT R++DL A + + T D +TS++ + G L
Sbjct: 228 DINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 204 ISAGRDKVVNLWD 216
++ D N+WD
Sbjct: 286 LAGYDDFNCNVWD 298
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 8/197 (4%)
Query: 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
+ T+ G I A+ D +LL S+ ++ +WD T + + + A P
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 113 SGGLLATAGADRKVLVWDV---DGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
SG +A G D ++++ +G + GH G +S F D + + + S D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF---LDDNQIVTSSGDT 164
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228
T +WD+ + T H V S+++ D +S D LWD+R+ C+ T
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 229 YEM-VEAVCAIPPGSAF 244
+E + A+C P G+AF
Sbjct: 225 HESDINAICFFPNGNAF 241
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 88/213 (41%), Gaps = 16/213 (7%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498
GH+ + A+ + LVS S D + +W D + + + L++ V+
Sbjct: 53 GHLAKIYAMHWGTD-SRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVM-------- 101
Query: 499 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGIWSVEFSPVDQVVITA 554
+ A AP+ + V G D ++ L V GH + F +Q+V T+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TS 160
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614
SGD T +W I G TF GHT V+ S VS D KLW VR G C
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
T+ HE I A+ FATG DA L+
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
AD L T P ++++ + L G+ +I + + G + + L A+ ++ ++D
Sbjct: 26 ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 84
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 439
+ + + + S V+ TCA + + G DN +++ ++R V V G
Sbjct: 85 YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
H G + F N +V+ S D T +W + + H D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
L++AP+ L +G+ D +A +W + + + TF GH+ I ++ F P T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 560 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
+++ + L T+ + + SF G +++ D +W +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
H++++ L V ATG D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA 122
+ +L+L+PD +L S ++WD+ C +++ GH+ + P+G AT
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 123 DRKVLVWDV--DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
D ++D+ D T+ ++S+ F LL +G DD VWD L
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNVWDALKADR 304
Query: 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216
L H +RV+ + +T DG + + D + +W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 117 LATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
+ T+ D +WD++ G T F GH G V S+ PDT L SG+ DA+ ++WD+
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVR 214
Query: 177 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
C T H S + ++ +G+ + D L+DLR + TY +C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR---ADQELMTYSHDNIIC 271
Query: 237 AI 238
I
Sbjct: 272 GI 273
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 31 GSFIACACGESI-NIVDL----SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
G+++AC ++I +I +L N + + G + ++ D++++ SSG +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCA 167
Query: 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
+WD+ T + ++ GH G + ++ P L + D +WDV G C F GH+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTL 203
+++I F P+ + +GSDDAT R++DL A + + T D +TS++ + G L
Sbjct: 228 DINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 204 ISAGRDKVVNLWD 216
++ D N+WD
Sbjct: 286 LAGYDDFNCNVWD 298
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 8/197 (4%)
Query: 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
+ T+ G I A+ D +LL S+ ++ +WD T + + + A P
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 113 SGGLLATAGADRKVLVWDV---DGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
SG +A G D ++++ +G + GH G +S F D + + + S D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF---LDDNQIVTSSGDT 164
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228
T +WD+ + T H V S+++ D +S D LWD+R+ C+ T
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 229 YEM-VEAVCAIPPGSAF 244
+E + A+C P G+AF
Sbjct: 225 HESDINAICFFPNGNAF 241
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
AD L T P ++++ + L G+ +I + + G + + L A+ ++ ++D
Sbjct: 26 ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDS 84
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 439
+ + + + S V+ TCA + + G DN +++ ++R V V G
Sbjct: 85 YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
H G + F N +V+ S D T +W + + H D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
L++AP+ L +G+ D +A +W + + + TF GH+ I ++ F P T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 560 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
+++ + L T+ + + SF G +++ D +W +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
H++++ L V ATG D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA 122
+ +L+L+PD +L S ++WD+ C +++ GH+ + P+G AT
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 123 DRKVLVWDV--DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
D ++D+ D T+ ++S+ F LL +G DD VWD L
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNVWDALKADR 304
Query: 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216
L H +RV+ + +T DG + + D + +W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 117 LATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
+ T+ D +WD++ G T F GH G V S+ PDT L SG+ DA+ ++WD+
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVR 214
Query: 177 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
C T H S + ++ +G+ + D L+DLR + TY +C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR---ADQELMTYSHDNIIC 271
Query: 237 AI 238
I
Sbjct: 272 GI 273
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 31 GSFIACACGESI-NIVDL----SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
G+++AC ++I +I +L N + + G + ++ D++++ SSG +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCA 167
Query: 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
+WD+ T + ++ GH G + ++ P L + D +WDV G C F GH+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTL 203
+++I F P+ + +GSDDAT R++DL A + + T D +TS++ + G L
Sbjct: 228 DINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 204 ISAGRDKVVNLWD 216
++ D N+WD
Sbjct: 286 LAGYDDFNCNVWD 298
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 8/197 (4%)
Query: 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
+ T+ G I A+ D +LL S+ ++ +WD T + + + A P
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 113 SGGLLATAGADRKVLVWDV---DGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
SG +A G D ++++ +G + GH G +S F D + + + S D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF---LDDNQIVTSSGDT 164
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228
T +WD+ + T H V S+++ D +S D LWD+R+ C+ T
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 229 YEM-VEAVCAIPPGSAF 244
+E + A+C P G+AF
Sbjct: 225 HESDINAICFFPNGNAF 241
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
AD L T P ++++ + L G+ +I + + G + + L A+ ++ ++D
Sbjct: 26 ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDS 84
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 439
+ + + + S V+ TCA + + G DN +++ ++R V V G
Sbjct: 85 YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
H G + F N +V+ S D T +W + + H D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
L++AP+ L +G+ D +A +W + + + TF GH+ I ++ F P T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 560 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
+++ + L T+ + + SF G +++ D +W +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
H++++ L V ATG D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA 122
+ +L+L+PD +L S ++WD+ C +++ GH+ + P+G AT
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 123 DRKVLVWDV--DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
D ++D+ D T+ ++S+ F LL +G DD VWD L
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNVWDALKADR 304
Query: 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216
L H +RV+ + +T DG + + D + +W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 117 LATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
+ T+ D +WD++ G T F GH G V S+ PDT L SG+ DA+ ++WD+
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVR 214
Query: 177 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
C T H S + ++ +G+ + D L+DLR + TY +C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR---ADQELMTYSHDNIIC 271
Query: 237 AI 238
I
Sbjct: 272 GI 273
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 31 GSFIACACGESI-NIVDL----SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
G+++AC ++I +I +L N + + G + ++ D++++ SSG +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCA 167
Query: 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
+WD+ T + ++ GH G + ++ P L + D +WDV G C F GH+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTL 203
+++I F P+ + +GSDDAT R++DL A + + T D +TS++ + G L
Sbjct: 228 DINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 204 ISAGRDKVVNLWD 216
++ D N+WD
Sbjct: 286 LAGYDDFNCNVWD 298
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 8/197 (4%)
Query: 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
+ T+ G I A+ D +LL S+ ++ +WD T + + + A P
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 113 SGGLLATAGADRKVLVWDV---DGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
SG +A G D ++++ +G + GH G +S F D + + + S D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF---LDDNQIVTSSGDT 164
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228
T +WD+ + T H V S+++ D +S D LWD+R+ C+ T
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 229 YEM-VEAVCAIPPGSAF 244
+E + A+C P G+AF
Sbjct: 225 HESDINAICFFPNGNAF 241
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 88/213 (41%), Gaps = 16/213 (7%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498
GH+ + A+ + LVS S D + +W D + + + L++ V+
Sbjct: 53 GHLAKIYAMHWGTD-SRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVM-------- 101
Query: 499 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGIWSVEFSPVDQVVITA 554
+ A AP+ + V G D ++ L V GH + F +Q+V T+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TS 160
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614
SGD T +W I G TF GHT V+ S VS D KLW VR G C
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
T+ HE I A+ FATG DA L+
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
AD L T P ++++ + L G+ +I + + G + + L A+ ++ ++D
Sbjct: 26 ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 84
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 439
+ + + + S V+ TCA + + G DN +++ ++R V V G
Sbjct: 85 YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
H G + F N +V+ S D T +W + + H D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
L++AP+ L +G+ D +A +W + + + TF GH+ I ++ F P T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 560 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
+++ + L T+ + + SF G +++ D +W +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
H++++ L V ATG D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA 122
+ +L+L+PD +L S ++WD+ C +++ GH+ + P+G AT
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 123 DRKVLVWDV--DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
D ++D+ D T+ ++S+ F LL +G DD VWD L
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNVWDALKADR 304
Query: 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216
L H +RV+ + +T DG + + D + +W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 117 LATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
+ T+ D +WD++ G T F GH G V S+ PDT L SG+ DA+ ++WD+
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVR 214
Query: 177 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
C T H S + ++ +G+ + D L+DLR + TY +C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR---ADQELMTYSHDNIIC 271
Query: 237 AI 238
I
Sbjct: 272 GI 273
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 31 GSFIACACGESI-NIVDL----SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
G+++AC ++I +I +L N + + G + ++ D++++ SSG +
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCA 178
Query: 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
+WD+ T + ++ GH G + ++ P L + D +WDV G C F GH+
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTL 203
+++I F P+ + +GSDDAT R++DL A + + T D +TS++ + G L
Sbjct: 239 DINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
Query: 204 ISAGRDKVVNLWD 216
++ D N+WD
Sbjct: 297 LAGYDDFNCNVWD 309
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 8/197 (4%)
Query: 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
+ T+ G I A+ D +LL S+ ++ +WD T + + + A P
Sbjct: 59 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 118
Query: 113 SGGLLATAGADRKVLVWDV---DGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
SG +A G D ++++ +G + GH G +S F D + + + S D
Sbjct: 119 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF---LDDNQIVTSSGDT 175
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228
T +WD+ + T H V S+++ D +S D LWD+R+ C+ T
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 235
Query: 229 YEM-VEAVCAIPPGSAF 244
+E + A+C P G+AF
Sbjct: 236 HESDINAICFFPNGNAF 252
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 88/213 (41%), Gaps = 16/213 (7%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498
GH+ + A+ + LVS S D + +W D + + + L++ V+
Sbjct: 64 GHLAKIYAMHWGTD-SRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVM-------- 112
Query: 499 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGIWSVEFSPVDQVVITA 554
+ A AP+ + V G D ++ L V GH + F +Q+V T+
Sbjct: 113 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TS 171
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614
SGD T +W I G TF GHT V+ S VS D KLW VR G C
Sbjct: 172 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 231
Query: 615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
T+ HE I A+ FATG DA L+
Sbjct: 232 TFTGHESDINAICFFPNGNAFATGSDDATCRLF 264
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
AD L T P ++++ + L G+ +I + + G + + L A+ ++ ++D
Sbjct: 37 ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 95
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 439
+ + + + S V+ TCA + + G DN +++ ++R V V G
Sbjct: 96 YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 152
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
H G + F N +V+ S D T +W + + H D+ S
Sbjct: 153 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 200
Query: 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
L++AP+ L +G+ D +A +W + + + TF GH+ I ++ F P T S D T
Sbjct: 201 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Query: 560 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
+++ + L T+ + + SF G +++ D +W +
Sbjct: 261 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 320
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
H++++ L V ATG D+ + +W+
Sbjct: 321 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA 122
+ +L+L+PD +L S ++WD+ C +++ GH+ + P+G AT
Sbjct: 198 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 257
Query: 123 DRKVLVWDV--DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
D ++D+ D T+ ++S+ F LL +G DD VWD L
Sbjct: 258 DATCRLFDLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNVWDALKADR 315
Query: 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216
L H +RV+ + +T DG + + D + +W+
Sbjct: 316 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 117 LATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
+ T+ D +WD++ G T F GH G V S+ PDT L SG+ DA+ ++WD+
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVR 225
Query: 177 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
C T H S + ++ +G+ + D L+DLR + TY +C
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR---ADQELMTYSHDNIIC 282
Query: 237 AI 238
I
Sbjct: 283 GI 284
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK----CLRSWKGHDGPAIGMA 109
+T+ G S + L +PD + L S G+ + VW + + L+++ H G +A
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 110 -CHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166
C +LAT G +DR + +W+V G C H V S IL+ P + + G
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPHYKELISGHGFA 342
Query: 167 DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
+ +W VA L H SRV S+ ++ DG+T+ SA D+ + LW
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 44/219 (20%)
Query: 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG--------TGHMG 442
L+GHS+ V L G+ L +G DN V +W S G G T H G
Sbjct: 225 TLSGHSQEVCGLRWAP--DGRHL-ASGGNDNLVNVWPS----APGEGGWVPLQTFTQHQG 277
Query: 443 AVGAVAFSKKLQNFLVSG--SSDHTIKVW---------SFDGLSDDAEQPMNLKAKAVVA 491
AV AVA+ N L +G +SD I++W + D S + K +++
Sbjct: 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 337
Query: 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551
HG N L +W+ P + V +GH + S+ SP V
Sbjct: 338 GHGFAQNQL------------------VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 379
Query: 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
+A+ D+T+++W + + E +S ++S + +G
Sbjct: 380 ASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 418
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423
+E YLAV T+ +VQ++D+ + HS V +LS ++ +GS+ +
Sbjct: 157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-----GSLSWNSYILSSGSRSGHI 211
Query: 424 RLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482
D + V +GH V + ++ ++ L SG +D+ + VW + P+
Sbjct: 212 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWP-SAPGEGGWVPL 269
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCT---GSQDRTACVWRLPDLVSVVTFRGHKRGI 539
H + ++A P S V G+ DR +W + + H + +
Sbjct: 270 Q-----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 323
Query: 540 WSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 597
S+ +SP + +I+ G + IW + + +GHTS VL + GA + S
Sbjct: 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 383
Query: 598 ADGLVKLW 605
AD ++LW
Sbjct: 384 ADETLRLW 391
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 106/230 (46%), Gaps = 29/230 (12%)
Query: 402 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA--VGAVAFSKKLQNFLVS 459
L+ SSG +L V + DNSV LW + S + + + +VA+ K+ N+L
Sbjct: 108 LNLVDWSSGNVLAV--ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAV 164
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
G+S +++W D +Q L+ + +H + SL+ N ++ +GS R+
Sbjct: 165 GTSSAEVQLW-------DVQQQKRLRN---MTSHSARVGSLSW--NSYILSSGS--RSGH 210
Query: 520 VWRLPDLVS---VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS----CLK 572
+ V+ V T GH + + + ++P + + + D + +W + G L+
Sbjct: 211 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 270
Query: 573 TFEGHTSSVLRASFLTRGAQIVSCG---ADGLVKLWTVRTGECIATYDKH 619
TF H +V ++ + +++ G +D +++W V +G C++ D H
Sbjct: 271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
G LA + +V +WDV H V S+ + + +L SGS +
Sbjct: 159 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHH 214
Query: 174 DL-LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
D+ +A+ VATL H V + DG L S G D +VN+W
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE----CIATYDKHEDKIWALA- 627
T GH+ V + G + S G D LV +W GE + T+ +H+ + A+A
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 628 VGKKTEMFATGG--SDALVNLWH 648
++ + ATGG SD + +W+
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWN 307
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 560 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGEC-IATYD 617
+++W + L+ H++ R L+ + I+S G+ G + VR E +AT
Sbjct: 171 VQLWDVQQQKRLRNMTSHSA---RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 227
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLW 647
H ++ L A+GG+D LVN+W
Sbjct: 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK----CLRSWKGHDGPAIGMA 109
+T+ G S + L +PD + L S G+ + VW + + L+++ H G +A
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 110 -CHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166
C +LAT G +DR + +W+V G C H V S IL+ P + + G
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPHYKELISGHGFA 353
Query: 167 DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
+ +W VA L H SRV S+ ++ DG+T+ SA D+ + LW
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 44/219 (20%)
Query: 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG--------TGHMG 442
L+GHS+ V L G+ L +G DN V +W S G G T H G
Sbjct: 236 TLSGHSQEVCGLRWAP--DGRHL-ASGGNDNLVNVWPS----APGEGGWVPLQTFTQHQG 288
Query: 443 AVGAVAFSKKLQNFLVSG--SSDHTIKVW---------SFDGLSDDAEQPMNLKAKAVVA 491
AV AVA+ N L +G +SD I++W + D S + K +++
Sbjct: 289 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 348
Query: 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551
HG N L +W+ P + V +GH + S+ SP V
Sbjct: 349 GHGFAQNQL------------------VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 390
Query: 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
+A+ D+T+++W + + E +S ++S + +G
Sbjct: 391 ASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 429
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423
+E YLAV T+ +VQ++D+ + HS V +LS ++ +GS+ +
Sbjct: 168 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-----GSLSWNSYILSSGSRSGHI 222
Query: 424 RLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482
D + V +GH V + ++ ++ L SG +D+ + VW + P+
Sbjct: 223 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWP-SAPGEGGWVPL 280
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCT---GSQDRTACVWRLPDLVSVVTFRGHKRGI 539
H + ++A P S V G+ DR +W + + H + +
Sbjct: 281 Q-----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 334
Query: 540 WSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 597
S+ +SP + +I+ G + IW + + +GHTS VL + GA + S
Sbjct: 335 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 394
Query: 598 ADGLVKLW 605
AD ++LW
Sbjct: 395 ADETLRLW 402
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 106/230 (46%), Gaps = 29/230 (12%)
Query: 402 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA--VGAVAFSKKLQNFLVS 459
L+ SSG +L V + DNSV LW + S + + + +VA+ K+ N+L
Sbjct: 119 LNLVDWSSGNVLAV--ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAV 175
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
G+S +++W D +Q L+ + +H + SL+ N ++ +GS R+
Sbjct: 176 GTSSAEVQLW-------DVQQQKRLRN---MTSHSARVGSLSW--NSYILSSGS--RSGH 221
Query: 520 VWRLPDLVS---VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS----CLK 572
+ V+ V T GH + + + ++P + + + D + +W + G L+
Sbjct: 222 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 281
Query: 573 TFEGHTSSVLRASFLTRGAQIVSCG---ADGLVKLWTVRTGECIATYDKH 619
TF H +V ++ + +++ G +D +++W V +G C++ D H
Sbjct: 282 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
G LA + +V +WDV H V S+ + + +L SGS +
Sbjct: 170 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHH 225
Query: 174 DL-LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
D+ +A+ VATL H V + DG L S G D +VN+W
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 571 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE----CIATYDKHEDKIWAL 626
+ T GH+ V + G + S G D LV +W GE + T+ +H+ + A+
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 627 A-VGKKTEMFATGG--SDALVNLWH 648
A ++ + ATGG SD + +W+
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWN 318
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 560 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGEC-IATYD 617
+++W + L+ H++ R L+ + I+S G+ G + VR E +AT
Sbjct: 182 VQLWDVQQQKRLRNMTSHSA---RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 238
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLW 647
H ++ L A+GG+D LVN+W
Sbjct: 239 GHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK----CLRSWKGHDGPAIGMA 109
+T+ G S + L +PD + L S G+ + VW + + L+++ H G +A
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 110 -CHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166
C +LAT G +DR + +W+V G C H V S IL+ P + + G
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPHYKELISGHGFA 262
Query: 167 DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
+ +W VA L H SRV S+ ++ DG+T+ SA D+ + LW
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 36/187 (19%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE----SRCCVGVGTGHMGAVGAV 447
L+GHS+ V L G+ L +G DN V +W S + T H GAV AV
Sbjct: 146 LSGHSQEVCGLRWAP--DGRHL-ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 448 AFSKKLQNFLVSG--SSDHTIKVW---------SFDGLSDDAEQPMNLKAKAVVAAHGKD 496
A+ N L +G +SD I++W + D S + K +++ HG
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 262
Query: 497 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 556
N L + W+ P + V +GH + S+ SP V +A+
Sbjct: 263 QNQLVI------------------WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 304
Query: 557 DKTIKIW 563
D+T+++W
Sbjct: 305 DETLRLW 311
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423
+E YLAV T+ +VQ++D+ + HS V +LS ++ +GS+ +
Sbjct: 77 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-----GSLSWNSYILSSGSRSGHI 131
Query: 424 RLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482
D + V +GH V + ++ ++ L SG +D+ + VW + P+
Sbjct: 132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWP-SAPGEGGWVPL 189
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCT---GSQDRTACVWRLPDLVSVVTFRGHKRGI 539
H + ++A P S V G+ DR +W + + H + +
Sbjct: 190 Q-----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 243
Query: 540 WSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 597
S+ +SP + +I+ G + IW + + +GHTS VL + GA + S
Sbjct: 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 303
Query: 598 ADGLVKLW 605
AD ++LW
Sbjct: 304 ADETLRLW 311
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 106/230 (46%), Gaps = 29/230 (12%)
Query: 402 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA--VGAVAFSKKLQNFLVS 459
L+ SSG +L V + DNSV LW + S + + + +VA+ K+ N+L
Sbjct: 28 LNLVDWSSGNVLAV--ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAV 84
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
G+S +++W D +Q L+ + +H + SL+ N ++ +GS R+
Sbjct: 85 GTSSAEVQLW-------DVQQQKRLRN---MTSHSARVGSLSW--NSYILSSGS--RSGH 130
Query: 520 VWRLPDLVS---VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS----CLK 572
+ V+ V T GH + + + ++P + + + D + +W + G L+
Sbjct: 131 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 190
Query: 573 TFEGHTSSVLRASFLTRGAQIVSCG---ADGLVKLWTVRTGECIATYDKH 619
TF H +V ++ + +++ G +D +++W V +G C++ D H
Sbjct: 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
G LA + +V +WDV H V S+ + + +L SGS +
Sbjct: 79 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHH 134
Query: 174 DL-LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
D+ +A+ VATL H V + DG L S G D +VN+W
Sbjct: 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 349 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV----LAGHSEIVLCLDT 404
L G+++E+ L++ + ++LA N V V+ + +V H V +
Sbjct: 146 LSGHSQEVCGLRW-APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 405 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS-GSSD 463
C S + G+ D +R+W+ S C+ H V ++ +S + + G +
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQ 263
Query: 464 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523
+ + +W + ++ AE + H + SL ++P+ + V + + D T +WR
Sbjct: 264 NQLVIWKYPTMAKVAE----------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313
Query: 524 PDL 526
+L
Sbjct: 314 FEL 316
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 571 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE----CIATYDKHEDKIWAL 626
+ T GH+ V + G + S G D LV +W GE + T+ +H+ + A+
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 627 A-VGKKTEMFATGG--SDALVNLWH 648
A ++ + ATGG SD + +W+
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWN 227
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 560 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGEC-IATYD 617
+++W + L+ H++ R L+ + I+S G+ G + VR E +AT
Sbjct: 91 VQLWDVQQQKRLRNMTSHSA---RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLW 647
H ++ L A+GG+D LVN+W
Sbjct: 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 40/264 (15%)
Query: 413 LIVTGSKDNSVRLWDSESRC-------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT 465
L+ GS D++V +W E + + GH V VA+S +L + S D +
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKS 130
Query: 466 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL-- 523
+ +W D E + +V+ H +D+ + P+++L+ + S D T +W+
Sbjct: 131 VWIWETD------ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184
Query: 524 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG--DKTIKIWSI--------SDGSCLKT 573
D V GH+ +WS +F + V SG D T+++W + C
Sbjct: 185 DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI 244
Query: 574 F-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE---------CIATYDKHEDKI 623
+ H V ++ G I S GADG++ ++ GE C Y+ + K
Sbjct: 245 LPDVHKRQVYNVAWGFNGL-IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKW 303
Query: 624 WALAVGKKTEMFATGGSDALVNLW 647
L + KT + ATGG D +VN W
Sbjct: 304 --LELNGKT-ILATGGDDGIVNFW 324
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 21/209 (10%)
Query: 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS 513
Q L +GS+D IK+ S DD L AH K I S+A P+ SL+ GS
Sbjct: 24 QGILATGSTDRKIKLVSVK--YDD----FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77
Query: 514 QDRTACVW-------RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566
D T +W R ++ + GH+ + V +S + T S DK++ IW
Sbjct: 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137
Query: 567 DG----SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG--ECIATYDKHE 620
+ C+ + H+ V + A + S D V++W EC+A + HE
Sbjct: 138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE 197
Query: 621 DKIWALAVGKKTEMF--ATGGSDALVNLW 647
+W+ K +F +G D+ V +W
Sbjct: 198 GTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 32/246 (13%)
Query: 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL----STLKCLRSWKGHDGPAIGMA 109
+ IEG + + +A S D L + + + +W+ +C+ + H +
Sbjct: 101 AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160
Query: 110 CHPSGGLLATAGADRKVLVW-DVDGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167
HPS LLA++ D V +W D D + C GH+G V S F L SGSDD
Sbjct: 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD 220
Query: 168 ATVRVWDLLAKK--------CVATL-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218
+TVRVW + C A L D H +V ++A +G + S G D V+ +++
Sbjct: 221 STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV 279
Query: 219 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278
D K+ A+C Y +K + + T G+ GIV
Sbjct: 280 DGEWKVFAK-----RALCH-----------GVYEINVVKWLELNGKTILATGGDDGIVNF 323
Query: 279 WNADSA 284
W+ + A
Sbjct: 324 WSLEKA 329
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 122/290 (42%), Gaps = 19/290 (6%)
Query: 290 KSSDVTISFEMDDS--KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 347
K D T+ +D++ K+ + P L + D + ++ E ++ E+ L
Sbjct: 42 KYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLA 101
Query: 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL----SSMSCSYVLAGHSEIVLCLD 403
+ G+ E+ + + + YLA + + V +++ C VL HS+ V
Sbjct: 102 IIEGHENEVKGVAW-SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV---K 157
Query: 404 TCALSSGKILIVTGSKDNSVRLWDS--ESRCCVGVGTGHMGAVGAVAFSKKLQNF-LVSG 460
+ L+ + S D++VR+W + CV V GH G V + F K F L SG
Sbjct: 158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217
Query: 461 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520
S D T++VW + G +D +Q +A + H + + ++A N + G+ A
Sbjct: 218 SDDSTVRVWKYMGDDEDDQQEWVCEA-ILPDVHKRQVYNVAWGFNGLIASVGADGVLAVY 276
Query: 521 WRLPDLVSVVTFRGHKRGIWS---VEFSPVDQVVITASG--DKTIKIWSI 565
+ V R G++ V++ ++ I A+G D + WS+
Sbjct: 277 EEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 15/157 (9%)
Query: 508 LVCTGSQDR----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW 563
++ TGS DR + + L+ V+ HK+ I SV + P ++ S D T+ IW
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85
Query: 564 SISDGS-------CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW-TVRTGE---C 612
+ + + L EGH + V ++ G + +C D V +W T +GE C
Sbjct: 86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC 145
Query: 613 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649
I+ +H + + + A+ D V +W D
Sbjct: 146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 113 SGGLLATAGADRKVLVWDVDGGFCTHY----FKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
S G+LAT DRK+ + V T HK + S+ + P T SLL +GS D+
Sbjct: 23 SQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT--SLLAAGSFDS 80
Query: 169 TVRVW-------DLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL---- 217
TV +W +A ++ H + V +A ++DG L + RDK V +W+
Sbjct: 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140
Query: 218 RDYSC 222
+Y C
Sbjct: 141 EEYEC 145
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592
+ H I ++F P + +I++S D +KIWS+ DGS +T GH ++V + + RG
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 593 IVSCGADGLVKLWTVRTGECIATYDKHED 621
++S DG ++LW TG I T+++ E+
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKEN 221
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 94/247 (38%), Gaps = 35/247 (14%)
Query: 33 FIACACGESINIVDLSNASIKSTIEGGS-DTITALALSPDDKLLFSSGHSREIRVWDLST 91
FI I ++D SN +++ I+ IT L P + L SS ++++W +
Sbjct: 109 FILGTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 167
Query: 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF----KGHKGVV 147
R+ GH +A G + +A D + +W+ G H F H GV
Sbjct: 168 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN 227
Query: 148 SSILFHPDTDKSL-------------------LFSGSDDATVRVWDLLAKKCVATLDKHF 188
S LF TD+ L + +G + V ++ +K+ L F
Sbjct: 228 SIALF-VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF 286
Query: 189 S-RVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKL-------TVPTYEMVEAVCAIP 239
+ S+ + + + I AG + ++ WDLR C + P + A A+
Sbjct: 287 TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALF 346
Query: 240 PGSAFDS 246
S FD+
Sbjct: 347 VSSGFDT 353
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541
NL+ + + AH +I L P+ + + SQD +W + D + T GH+ +
Sbjct: 125 FNLQ-REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 183
Query: 542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574
+ + V++AS D TI++W G+ + TF
Sbjct: 184 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 575 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEM 634
+ H S + + F G ++S D +K+W+V+ G T H + +A+ +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 635 FATGGSDALVNLW 647
+ D + LW
Sbjct: 193 VLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592
+ H I ++F P + +I++S D +KIWS+ DGS +T GH ++V + + RG
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 593 IVSCGADGLVKLWTVRTGECIATYDKHED 621
++S DG ++LW TG I T+++ E+
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKEN 224
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 94/247 (38%), Gaps = 35/247 (14%)
Query: 33 FIACACGESINIVDLSNASIKSTIEGGS-DTITALALSPDDKLLFSSGHSREIRVWDLST 91
FI I ++D SN +++ I+ IT L P + L SS ++++W +
Sbjct: 112 FILGTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 170
Query: 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF----KGHKGVV 147
R+ GH +A G + +A D + +W+ G H F H GV
Sbjct: 171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN 230
Query: 148 SSILFHPDTDKSL-------------------LFSGSDDATVRVWDLLAKKCVATLDKHF 188
S LF TD+ L + +G + V ++ +K+ L F
Sbjct: 231 SIALF-VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF 289
Query: 189 S-RVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKL-------TVPTYEMVEAVCAIP 239
+ S+ + + + I AG + ++ WDLR C + P + A A+
Sbjct: 290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALF 349
Query: 240 PGSAFDS 246
S FD+
Sbjct: 350 VSSGFDT 356
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541
NL+ + + AH +I L P+ + + SQD +W + D + T GH+ +
Sbjct: 128 FNLQ-REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 186
Query: 542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574
+ + V++AS D TI++W G+ + TF
Sbjct: 187 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 575 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEM 634
+ H S + + F G ++S D +K+W+V+ G T H + +A+ +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 635 FATGGSDALVNLW 647
+ D + LW
Sbjct: 196 VLSASLDGTIRLW 208
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 15/250 (6%)
Query: 381 YDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH 440
++ + + C L GHS V LD + K IV+ S+D + +W++ + H
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLD---WTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH 107
Query: 441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 500
V AF+ Q+ + G D +++ LS A++ N+ V+ H +S
Sbjct: 108 CPWVMECAFAPNGQS-VACGGLDSACSIFN---LSSQADRDGNMPVSRVLTGHKGYASSC 163
Query: 501 AVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTF-----RGHKRGIWSVEFSPVD-QVVIT 553
P+ ++ + TGS D+T +W + + F GH + S+ + ++ + I+
Sbjct: 164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS 223
Query: 554 ASGDKTIKIWSISDGS-CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC 612
S D T+++W + S ++T+ GH + F G + + DG +L+ +RTG
Sbjct: 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283
Query: 613 IATYDKHEDK 622
+ Y++ D+
Sbjct: 284 LQVYNREPDR 293
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 27/231 (11%)
Query: 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491
CC + GH G V ++ ++ + +N++VS S D + VW + L+ + L V+
Sbjct: 58 CCRTL-QGHSGKVYSLDWTPE-KNWIVSASQDGRLIVW--NALTSQKTHAIKLHCPWVME 113
Query: 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP-------DLVSVVTFRGHKRGIWSVEF 544
A APN V G D ++ L ++ GHK S ++
Sbjct: 114 C--------AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY 165
Query: 545 SPVDQV-VITASGDKTIKIWSISDGSCLKTF-----EGHTSSVLRASFLTRGAQI-VSCG 597
P + +IT SGD+T +W ++ G + F GHT+ VL S + A + +S
Sbjct: 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 598 ADGLVKLWTVR-TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
D V+LW +R T + TY HE I ++ + F TG D L+
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/326 (20%), Positives = 136/326 (41%), Gaps = 29/326 (8%)
Query: 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLC 401
+L+ + L G++ ++ L + E+ ++ A+ ++ V++ + ++ + H V+
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWT-PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM- 112
Query: 402 LDTCALSSGKILIVTGSKDNSVRLWDSESRC-------CVGVGTGHMGAVGAVAFSKKLQ 454
CA + + G D++ +++ S+ V TGH G + + +
Sbjct: 113 --ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV-APNDSLVCTGS 513
L++GS D T +W Q +++ + H D+ SL++ + N ++ +GS
Sbjct: 171 TRLITGSGDQTCVLWDVT-----TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 514 QDRTACVWRLPDLVSVV-TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 572
D T +W L V T+ GH+ I SV+F P Q T S D T +++ + G L+
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
Query: 573 TF-------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY----DKHED 621
+ + V +F G + + ++G +W E + + HE
Sbjct: 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG 345
Query: 622 KIWALAVGKKTEMFATGGSDALVNLW 647
+I L + TG D + +W
Sbjct: 346 RISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 20/207 (9%)
Query: 55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG 114
T++G S + +L +P+ + S+ + VW+ T + + K H + A P+G
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 115 GLLATAGADRKVLVW------DVDGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167
+A G D ++ D DG + GHKG SS + PD + L+ +GS D
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI-TGSGD 179
Query: 168 ATVRVWDLLAKKCVATLDKHF-----SRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYS 221
T +WD+ + ++ F + V S++I S + + IS D V LWDLR S
Sbjct: 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239
Query: 222 CKLTVPTYEM----VEAVCAIPPGSAF 244
V TY + +V P G F
Sbjct: 240 --RAVRTYHGHEGDINSVKFFPDGQRF 264
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 58 GGSDTITALALSPDDKLLFSSGH-SREIRVWDLS-TLKCLRSWKGHDGPAIGMACHPSGG 115
G + + +L+++ + +F SG +R+WDL T + +R++ GH+G + P G
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 116 LLATAGADRKVLVWDVDGGFCTHYFKGHKG-------VVSSILFHPDTDKSLLFSGSDDA 168
T D ++D+ G + +V+S+ F LLF+G +
Sbjct: 263 RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF--SISGRLLFAGYSNG 320
Query: 169 TVRVWDLLAKKCVATL----DKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
VWD L + V L + H R++ + ++SDGS L + DK + +W
Sbjct: 321 DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 121/275 (44%), Gaps = 40/275 (14%)
Query: 314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373
P+ Q + C D ++ ++ + +S+ L G+ +++ ++E L +
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS 177
Query: 374 NIEQVQVYDLS-----SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428
+ ++D++ S+ S +GH+ VL L +L++ + ++GS D +VRLWD
Sbjct: 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN--MFISGSCDTTVRLWDL 235
Query: 429 E--SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----------HTIKVWSFDGLS 475
SR V GH G + +V F Q F +GS D H ++V++ +
Sbjct: 236 RITSRA-VRTYHGHEGDINSVKFFPDGQRF-GTGSDDGTCRLFDMRTGHQLQVYNREPDR 293
Query: 476 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR--LPDLV-SVVTF 532
+D E P+ + S+A + + L+ G + VW L ++V ++ T
Sbjct: 294 NDNELPI--------------VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL 339
Query: 533 RG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566
+ H+ I + S + T S DK +KIW+ S
Sbjct: 340 QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 15/170 (8%)
Query: 63 ITALALSPDDKLLFSSGHSREIRVWDLST-------LKCLRSWKGHDGPAIGMACHPSGG 115
+ A +P+ + + G +++LS+ + R GH G A P
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 116 L-LATAGADRKVLVWDVDGG-----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169
L T D+ ++WDV G F + + GH V S+ + + ++ SGS D T
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN-SLNANMFISGSCDTT 229
Query: 170 VRVWDL-LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218
VR+WDL + + V T H + S+ DG + D L+D+R
Sbjct: 230 VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 572
+Q RTA + DLV T +GH ++S++++P +++AS D + +W+
Sbjct: 43 AQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH 102
Query: 573 TFEGHTSSVLRASFLTRGAQIVSCGA 598
+ H V+ +F G Q V+CG
Sbjct: 103 AIKLHCPWVMECAFAPNG-QSVACGG 127
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%)
Query: 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
+T ++ +D C +T +GH+ V + IVS DG + +W T +
Sbjct: 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK 105
Query: 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
H + A + A GG D+ ++++ S+
Sbjct: 106 LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 116/241 (48%), Gaps = 13/241 (5%)
Query: 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473
IVTG ++ +RLW+ ++ + V H + +V ++K ++S ++ +W+
Sbjct: 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD-GTHIISMDVENVTILWNV-- 178
Query: 474 LSDDAEQPMNLK---AKAVVAAHGKDINSLAV----APNDSLVCTGSQDRTACVWRLPDL 526
+S Q LK ++ A + SL V +D V G + V+++ +
Sbjct: 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG-AIFVYQITEK 237
Query: 527 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
GH I +EF+ ++++++AS D T++IW +G+ F GH+ S++ AS+
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW 297
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 646
+ +++SC DG V+LW+++ +A I+A + + + +A D VN+
Sbjct: 298 VGD-DKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356
Query: 647 W 647
+
Sbjct: 357 Y 357
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 5/186 (2%)
Query: 71 DDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130
DDK + G I V+ ++ GH GP + + + LL +A D + +W
Sbjct: 217 DDKFVIP-GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275
Query: 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR 190
G + F GH + S + D DK + S S D +VR+W L +A
Sbjct: 276 GGNGNSQNCFYGHSQSIVSASWVGD-DK--VISCSMDGSVRLWSLKQNTLLALSIVDGVP 332
Query: 191 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250
+ + I+ DG A D VN++DL+ + K + Y + + P + S+ SS
Sbjct: 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSK-SRSLYGNRDGILNPLPIPLYASYQSS 391
Query: 251 YNQQTI 256
+ I
Sbjct: 392 QDNDYI 397
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 73/214 (34%), Gaps = 58/214 (27%)
Query: 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLAT 119
++ +T LA S D + + + E+R+W+ T L H P + + + G + +
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 120 AGADRKVLVWDVDGGFCTHYFK-----------------------------------GHK 144
+ ++W+V G +F+ G K
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 145 GVVS--------------------SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL 184
G + S+L DT+K LL S SDD T+R+W
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNSQNCF 285
Query: 185 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218
H + S + D +IS D V LW L+
Sbjct: 286 YGHSQSIVSASWVGD-DKVISCSMDGSVRLWSLK 318
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 30/179 (16%)
Query: 62 TITALALSPDDKLLF-SSGHSREIRVWDLSTLKCL-------RSWKGHDGPAIGMACHPS 113
++ + P D +F SS + ++VWD +TL+ + H P C
Sbjct: 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC--- 157
Query: 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
L+A KV + D+ G C+H +GH+ + ++ + P D +L + S D+ V++W
Sbjct: 158 --LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY-ILATASADSRVKLW 214
Query: 174 DL-LAKKCVATLDK---------------HFSRVTSMAITSDGSTLISAGRDKVVNLWD 216
D+ A C+ TLD+ H +V + TSDG L++ G D + LW+
Sbjct: 215 DVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 25/189 (13%)
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
H +V V + S S D T+KVW + L N + + V + H
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--TADVFNFE-ETVYSHHMS---- 150
Query: 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDK 558
V+ LV G++ + L +GH++ I +V +SP D ++ TAS D
Sbjct: 151 -PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS 209
Query: 559 TIKIWSISDGS-CLKTFEGHTSSVLRA---------------SFLTRGAQIVSCGADGLV 602
+K+W + S CL T + H +A F + G +++ G D +
Sbjct: 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 603 KLWTVRTGE 611
+LW GE
Sbjct: 270 RLWNSSNGE 278
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD- 427
+AV T +VQ+ DL S SCS++L GH + +L + ++ T S D+ V+LWD
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY--DYILATASADSRVKLWDV 216
Query: 428 ---------------SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
+S+ T H G V + F+ + L G +D+ +++W+
Sbjct: 217 RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWN 273
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 101/240 (42%), Gaps = 14/240 (5%)
Query: 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 437
++V+D +++ + V E V +S+ L+ G++ V+L D +S C +
Sbjct: 124 LKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL 182
Query: 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF---DGLSDDAEQPMNLKAKAVVA--- 491
GH + AV++S + L + S+D +K+W G +Q K++AV +
Sbjct: 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242
Query: 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH-----KRGI-WSVEFS 545
AH +N L + + T D +W + + + G K+G+ ++V
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302
Query: 546 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 605
+ V G TI ++++ G + +GH +V F + ++ S D + W
Sbjct: 303 CSSEFVFVPYG-STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 104/257 (40%), Gaps = 33/257 (12%)
Query: 39 GESINIVDLSNASIKSTIEGGSDTITALALSPDD--------KLLFSSGHSR-EIRVWDL 89
G IN +D+ + + GGSD + L + K + S G ++ + +
Sbjct: 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102
Query: 90 STLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSS 149
T++ W HD G+ ++ D+ + VWD + F + V S
Sbjct: 103 ETVQ----WYPHDT-----------GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSH 147
Query: 150 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD-GSTLISAGR 208
+ T L+ G+ V++ DL + C L H + +++ + L +A
Sbjct: 148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA 207
Query: 209 DKVVNLWDLRDYS-CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 267
D V LWD+R S C +T+ + ++ A +S +++N + S +H
Sbjct: 208 DSRVKLWDVRRASGCLITLDQHNGKKS-------QAVESANTAHNGKVNGLCFTSDGLHL 260
Query: 268 ITVGERGIVRMWNADSA 284
+TVG +R+WN+ +
Sbjct: 261 LTVGTDNRMRLWNSSNG 277
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 42/208 (20%)
Query: 39 GESINIVDLSNASIKSTIEGGSDTITALALSPD-DKLLFSSGHSREIRVWDLSTLK-CLR 96
G + + DL + S ++G I A++ SP D +L ++ +++WD+ CL
Sbjct: 165 GPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI 224
Query: 97 SWKGHDGPA--------------IGMACHPSGGL-LATAGADRKVLVWDVDGG------- 134
+ H+G + C S GL L T G D ++ +W+ G
Sbjct: 225 TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY 284
Query: 135 --FCTHYFKGHK-----GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH 187
C + KG K G S +F P GS T+ V+ + + + + L H
Sbjct: 285 GKVCNNSKKGLKFTVSCGCSSEFVFVP--------YGS---TIAVYTVYSGEQITMLKGH 333
Query: 188 FSRVTSMAITSDGSTLISAGRDKVVNLW 215
+ V S+ L S RD + W
Sbjct: 334 YKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 99 KGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGFCTH-------YFKGHKGVVSSI 150
+GH G++ +P+ G L +A D + +WD++ H F GH VV +
Sbjct: 178 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 237
Query: 151 LFHPDTDKSLLFSGSDDATVRVWDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAG 207
+H +SL S +DD + +WD K T+D H + V ++ +++ G
Sbjct: 238 AWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 208 R-DKVVNLWDLRDYSCKL 224
DK V LWDLR+ KL
Sbjct: 297 SADKTVALWDLRNLKLKL 314
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 61/230 (26%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 470
GH ++++ L +L+S S DHTI +W
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 471 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 514
F ++DD + K V AH ++N L+ P ++ ++ TGS
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 515 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 566
D+T +W L +L + + +F HK I+ V++SP ++ ++ +SG D+ + +W +S
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358
Query: 567 ------DG--SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 607
DG L GHT+ + S+ I+ S D ++++W +
Sbjct: 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 98/235 (41%), Gaps = 15/235 (6%)
Query: 304 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363
K G+ + N LL + D + L+ P++ + G+ + D+ +
Sbjct: 182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL 241
Query: 364 EEEQYLAVATNIEQVQVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKD 420
E + +++ ++D + + S + + H+ V CL S + ++ TGS D
Sbjct: 242 LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS--EFILATGSAD 299
Query: 421 NSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL----- 474
+V LWD + + + H + V +S + L S +D + VW +
Sbjct: 300 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359
Query: 475 SDDAEQ-PMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLV 527
++DAE P L + H I+ + PN+ ++C+ S+D VW++ + V
Sbjct: 360 TEDAEDGPPEL--LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 15/167 (8%)
Query: 65 ALALSPD-DKLLFSSGHSREIRVWDLST-------LKCLRSWKGHDGPAIGMACHP-SGG 115
L+ +P+ + L S+ I +WD++ + + GH +A H
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 245
Query: 116 LLATAGADRKVLVWDVDGGFCT---HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
L + D+K+++WD + H H V+ + F+P ++ +L +GS D TV +
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE-FILATGSADKTVAL 304
Query: 173 WDLLAKKC-VATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDL 217
WDL K + + + H + + + T++ S+G D+ +++WDL
Sbjct: 305 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 21/163 (12%)
Query: 33 FIACACGESINIVDLSNASIKS---TIEGGSDTITALALSPDDKLLFSSGHS-REIRVWD 88
F + A + + I D N + T++ + + L+ +P + + ++G + + + +WD
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 89 LSTLKC-LRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDV-------------DG 133
L LK L S++ H + P +LA++G DR++ VWD+ DG
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 366
Query: 134 GFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175
+ GH +S ++P+ + ++ S S+D ++VW +
Sbjct: 367 PPELLFIHGGHTAKISDFSWNPN-EPWIICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 99 KGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGFCTHY-------FKGHKGVVSSI 150
+GH G++ +P+ G L +A D + +WD++ H F GH VV +
Sbjct: 180 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 239
Query: 151 LFHPDTDKSLLFSGSDDATVRVWDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAG 207
+H +SL S +DD + +WD K T+D H + V ++ +++ G
Sbjct: 240 AWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 208 R-DKVVNLWDLRDYSCKL 224
DK V LWDLR+ KL
Sbjct: 299 SADKTVALWDLRNLKLKL 316
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 61/230 (26%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 470
GH ++++ L +L+S S DHTI +W
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 471 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 514
F ++DD + K V AH ++N L+ P ++ ++ TGS
Sbjct: 241 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 300
Query: 515 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 566
D+T +W L +L + + +F HK I+ V++SP ++ ++ +SG D+ + +W +S
Sbjct: 301 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 360
Query: 567 ------DG--SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 607
DG L GHT+ + S+ I+ S D ++++W +
Sbjct: 361 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 98/235 (41%), Gaps = 15/235 (6%)
Query: 304 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363
K G+ + N LL + D + L+ P++ + G+ + D+ +
Sbjct: 184 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL 243
Query: 364 EEEQYLAVATNIEQVQVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKD 420
E + +++ ++D + + S + + H+ V CL S + ++ TGS D
Sbjct: 244 LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS--EFILATGSAD 301
Query: 421 NSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL----- 474
+V LWD + + + H + V +S + L S +D + VW +
Sbjct: 302 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 361
Query: 475 SDDAEQ-PMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLV 527
++DAE P L + H I+ + PN+ ++C+ S+D VW++ + V
Sbjct: 362 TEDAEDGPPEL--LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 414
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 15/167 (8%)
Query: 65 ALALSPD-DKLLFSSGHSREIRVWDLST-------LKCLRSWKGHDGPAIGMACHP-SGG 115
L+ +P+ + L S+ I +WD++ + + GH +A H
Sbjct: 188 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 247
Query: 116 LLATAGADRKVLVWDVDGGFCT---HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
L + D+K+++WD + H H V+ + F+P ++ +L +GS D TV +
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE-FILATGSADKTVAL 306
Query: 173 WDLLAKKC-VATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDL 217
WDL K + + + H + + + T++ S+G D+ +++WDL
Sbjct: 307 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 21/163 (12%)
Query: 33 FIACACGESINIVDLSNASIKS---TIEGGSDTITALALSPDDKLLFSSGHS-REIRVWD 88
F + A + + I D N + T++ + + L+ +P + + ++G + + + +WD
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 89 LSTLKC-LRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDV-------------DG 133
L LK L S++ H + P +LA++G DR++ VWD+ DG
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 368
Query: 134 GFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175
+ GH +S ++P+ + ++ S S+D ++VW +
Sbjct: 369 PPELLFIHGGHTAKISDFSWNPN-EPWIICSVSEDNIMQVWQM 410
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 99 KGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGFCTHY-------FKGHKGVVSSI 150
+GH G++ +P+ G L +A D + +WD++ H F GH VV +
Sbjct: 182 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 241
Query: 151 LFHPDTDKSLLFSGSDDATVRVWDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAG 207
+H +SL S +DD + +WD K T+D H + V ++ +++ G
Sbjct: 242 AWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 208 R-DKVVNLWDLRDYSCKL 224
DK V LWDLR+ KL
Sbjct: 301 SADKTVALWDLRNLKLKL 318
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 61/230 (26%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 470
GH ++++ L +L+S S DHTI +W
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 471 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 514
F ++DD + K V AH ++N L+ P ++ ++ TGS
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 302
Query: 515 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 566
D+T +W L +L + + +F HK I+ V++SP ++ ++ +SG D+ + +W +S
Sbjct: 303 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 362
Query: 567 ------DG--SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 607
DG L GHT+ + S+ I+ S D ++++W +
Sbjct: 363 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 98/235 (41%), Gaps = 15/235 (6%)
Query: 304 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363
K G+ + N LL + D + L+ P++ + G+ + D+ +
Sbjct: 186 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL 245
Query: 364 EEEQYLAVATNIEQVQVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKD 420
E + +++ ++D + + S + + H+ V CL S + ++ TGS D
Sbjct: 246 LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS--EFILATGSAD 303
Query: 421 NSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL----- 474
+V LWD + + + H + V +S + L S +D + VW +
Sbjct: 304 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 363
Query: 475 SDDAEQ-PMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLV 527
++DAE P L + H I+ + PN+ ++C+ S+D VW++ + V
Sbjct: 364 TEDAEDGPPEL--LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 416
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 15/167 (8%)
Query: 65 ALALSPD-DKLLFSSGHSREIRVWDLST-------LKCLRSWKGHDGPAIGMACHP-SGG 115
L+ +P+ + L S+ I +WD++ + + GH +A H
Sbjct: 190 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 249
Query: 116 LLATAGADRKVLVWDVDGGFCT---HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
L + D+K+++WD + H H V+ + F+P ++ +L +GS D TV +
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE-FILATGSADKTVAL 308
Query: 173 WDLLAKKC-VATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDL 217
WDL K + + + H + + + T++ S+G D+ +++WDL
Sbjct: 309 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 21/163 (12%)
Query: 33 FIACACGESINIVDLSNASIKS---TIEGGSDTITALALSPDDKLLFSSGHS-REIRVWD 88
F + A + + I D N + T++ + + L+ +P + + ++G + + + +WD
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 89 LSTLKC-LRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDV-------------DG 133
L LK L S++ H + P +LA++G DR++ VWD+ DG
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 370
Query: 134 GFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175
+ GH +S ++P+ + ++ S S+D ++VW +
Sbjct: 371 PPELLFIHGGHTAKISDFSWNPN-EPWIICSVSEDNIMQVWQM 412
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 485 KAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD--LV-----SVVTFRGHK 536
K +V H + +A P ND+++ +GS+D T VW +PD LV V+T GH
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 537 RGIWSVEFSPVDQ-VVITASGDKTIKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQI 593
+ + V + P Q V+++A D I +W + G+ + T + H ++ + GA I
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 594 VSCGADGLVKLWTVRTGECIATYDK-HE 620
+ D V++ R G +A D+ HE
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHE 219
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD-------LLAKKCVATLDKHFSRVTSM 194
GH V I + P D +++ SGS+D TV VW+ L ++ V TL+ H RV +
Sbjct: 79 GHTAPVLDIAWXPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 195 AI-TSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
A + + L+SAG D V+ +WD+ + LT+
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 27/138 (19%)
Query: 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-------RCCVGVGTGHMGA 443
++ GH+ VL D +I +GS+D +V +W+ R V GH
Sbjct: 76 LVXGHTAPVL--DIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503
VG VA+ QN L+S D+ I VW ++ A V G D++ +
Sbjct: 134 VGIVAWHPTAQNVLLSAGXDNVILVW-------------DVGTGAAVLTLGPDVHPDTIY 180
Query: 504 PND-----SLVCTGSQDR 516
D +L+CT +D+
Sbjct: 181 SVDWSRDGALICTSCRDK 198
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 35/221 (15%)
Query: 28 SSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRV 86
S G+F+ G++ VD N + + G + + +A P +D ++ S + V
Sbjct: 54 SGGGAFLVLPLGKT-GRVD-KNVPL---VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMV 108
Query: 87 WD-------LSTLKCLRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDVDGGFCTH 138
W+ L + + + +GH +A HP+ +L +AG D +LVWDV G
Sbjct: 109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAV- 167
Query: 139 YFKGHKGVVSSILFHPDT--------DKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-- 188
+ HPDT D +L+ + D VRV + VA D+
Sbjct: 168 -------LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG 220
Query: 189 SRVTSMAITSDGSTL---ISAGRDKVVNLWDLRDYSCKLTV 226
+R S+G L S ++ V LWD + L++
Sbjct: 221 TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSL 261
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 485 KAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD--LV-----SVVTFRGHK 536
K +V H + +A P ND+++ +GS+D T VW +PD LV V+T GH
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 537 RGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQI 593
+ + V + P Q V+ ++G D I +W + G+ + T + H ++ + GA I
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 594 VSCGADGLVKLWTVRTGECIATYDK-HE 620
+ D V++ R G +A D+ HE
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHE 219
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD-------LLAKKCVATLDKHFSRVTSM 194
GH V I + P D +++ SGS+D TV VW+ L ++ V TL+ H RV +
Sbjct: 79 GHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 195 AI-TSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
A + + L+SAG D V+ +WD+ + LT+
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-------RCCVGVGTGHMGA 443
++ GH+ VL + C + +I +GS+D +V +W+ R V GH
Sbjct: 76 LVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503
VG VA+ QN L+S D+ I VW ++ A V G D++ +
Sbjct: 134 VGIVAWHPTAQNVLLSAGCDNVILVW-------------DVGTGAAVLTLGPDVHPDTIY 180
Query: 504 PND-----SLVCTGSQDR 516
D +L+CT +D+
Sbjct: 181 SVDWSRDGALICTSCRDK 198
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 43/220 (19%)
Query: 21 GGGPLVVSSDGSF------IACACGESINIVDLSNASIK-STIEGGSDTITALALS-PDD 72
GGG +V G + CG + ++D++ + I GS+ T + PD
Sbjct: 55 GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114
Query: 73 KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDV 131
L+ L + + + +GH +A HP+ +L +AG D +LVWDV
Sbjct: 115 GLV-------------LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161
Query: 132 DGGFCTHYFKGHKGVVSSILFHPDT--------DKSLLFSGSDDATVRVWDLLAKKCVAT 183
G + HPDT D +L+ + D VRV + VA
Sbjct: 162 GTGAAV--------LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213
Query: 184 LDKHF--SRVTSMAITSDGSTL---ISAGRDKVVNLWDLR 218
D+ +R S+G L S ++ V LWD +
Sbjct: 214 KDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK 253
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 61/230 (26%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 470
GH ++++ L L+S S DHT+ +W
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 471 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 514
F ++DD + K +V AH ++N L+ P ++ ++ TGS
Sbjct: 237 WHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 515 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 566
D+T +W L +L + + TF HK I+ V +SP ++ ++ +SG D+ + +W +S
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356
Query: 567 ------DG--SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 607
DG L GHT+ + S+ ++ S D ++++W +
Sbjct: 357 SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 99 KGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGF-------CTHYFKGHKGVVSSI 150
+GH G++ + + G L +A D V +WD++ G F GH VV +
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 151 LFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAITSDGSTLISAG 207
+H +SL S +DD + +WD + K +D H + V ++ +++ G
Sbjct: 236 AWHL-LHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 208 R-DKVVNLWDLRDYSCKL 224
DK V LWDLR+ KL
Sbjct: 295 SADKTVALWDLRNLKLKL 312
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 93/216 (43%), Gaps = 15/216 (6%)
Query: 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 378
LL + D + L+ P++ + G++ + D+ + E + +++
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 379 QVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCV 434
++D S + S +++ H+ V CL S + ++ TGS D +V LWD + + +
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS--EFILATGSADKTVALWDLRNLKLKL 312
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL-----SDDAEQ-PMNLKAKA 488
H + V +S + L S +D + VW + ++DAE P L
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL--LF 370
Query: 489 VVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRL 523
+ H I+ + PN+ ++C+ S+D +W++
Sbjct: 371 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 116 LLATAGADRKVLVWDVDGGFCT---HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
L + D+K+++WD + H H V+ + F+P ++ +L +GS D TV +
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE-FILATGSADKTVAL 302
Query: 173 WDLLAKKC-VATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDL 217
WDL K + T + H + + + T++ S+G D+ +N+WDL
Sbjct: 303 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 78/163 (47%), Gaps = 21/163 (12%)
Query: 33 FIACACGESINIVDL-SNASIKST--IEGGSDTITALALSPDDKLLFSSGHS-REIRVWD 88
F + A + + I D SN + K + ++ + + L+ +P + + ++G + + + +WD
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 89 LSTLKC-LRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDV-------------DG 133
L LK L +++ H + P +LA++G DR++ VWD+ DG
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 134 GFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175
+ GH +S ++P+ + ++ S S+D +++W +
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPN-EPWVICSVSEDNIMQIWQM 406
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 41 SINIVDLSNAS--IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98
+++I DL+ + IK+ + + ALA+SPD K+ FS I VWDL +R +
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG--FCTHYFKGHKGVVSSILFHPDT 156
+GH A + G L T G D V WD+ G H F + S+ + P
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ---IFSLGYCPTG 236
Query: 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
+ L G + + V V + K L H S V S+ G +S G+D ++N W
Sbjct: 237 E--WLAVGMESSNVEVLH-VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 81/213 (38%), Gaps = 14/213 (6%)
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD--I 497
H V AV S ++ G +KVW D P N + + +D I
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGKG--CVKVW-------DISHPGNKSPVSQLDCLNRDNYI 100
Query: 498 NSLAVAPNDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555
S + P+ + G + T +W L P +++ SP +V +
Sbjct: 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160
Query: 556 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT 615
D I +W + + + ++ F+GHT G ++ + G D V+ W +R G +
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 616 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
+D +I++L E A G + V + H
Sbjct: 221 HD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLH 252
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/271 (18%), Positives = 98/271 (36%), Gaps = 39/271 (14%)
Query: 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACH--------- 111
+ + A+ +S + +++ G ++VWD+S G+ P + C
Sbjct: 52 EVVCAVTISNPTRHVYTGGKGC-VKVWDISH-------PGNKSPVSQLDCLNRDNYIRSC 103
Query: 112 ---PSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168
P G L G + +WD+ + + D + FS D
Sbjct: 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163
Query: 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228
+ VWDL + V H + + I++DG+ L + G D V WDLR+
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF 223
Query: 229 YEMVEAVCAIPPGSAFDSFLSSYNQQTI---KKKRRSLEIH---------------FITV 270
+ ++ P G + S N + + K + L +H F++
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST 283
Query: 271 GERGIVRMWNAD-SACLYEQKSSDVTISFEM 300
G+ ++ W A +++ K S +S ++
Sbjct: 284 GKDNLLNAWRTPYGASIFQSKESSSVLSCDI 314
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 65/197 (32%), Gaps = 48/197 (24%)
Query: 457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 516
L+ G T+ +W A P + KA + + +LA++P+ + + D
Sbjct: 112 LIVGGEASTLSIWDLA-----APTP---RIKAELTSSAPACYALAISPDSKVCFSCCSDG 163
Query: 517 TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 576
VW L + V F+GH G ++ S + T D T++ W + +G L+ +
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF 223
Query: 577 ----------------------------------------HTSSVLRASFLTRGAQIVSC 596
H S VL F G VS
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST 283
Query: 597 GADGLVKLWTVRTGECI 613
G D L+ W G I
Sbjct: 284 GKDNLLNAWRTPYGASI 300
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 20/187 (10%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451
L GHS V L A S + + +G DN V++WD+ S T H AV AVA+
Sbjct: 213 LQGHSSEVCGL---AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 452 KLQNFLVS--GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 509
N L + G+ D I W+ A+ G + SL +P+ +
Sbjct: 270 WQSNLLATGGGTMDKQIHFWN-----------AATGARVNTVDAGSQVTSLIWSPHSKEI 318
Query: 510 CT--GSQDRTACVWRLPD--LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565
+ G D +W L V H + SP +++ TA+ D+ +K W +
Sbjct: 319 MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Query: 566 SDGSCLK 572
DG +K
Sbjct: 379 YDGDHVK 385
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 7/180 (3%)
Query: 45 VDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP 104
V ++N I T++G S + LA D L S G+ +++WD + + H+
Sbjct: 203 VRIANHQI-GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAA 261
Query: 105 AIGMA-CHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLL 161
+A C LLAT G D+++ W+ G + V+S+++ P + + +
Sbjct: 262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMS 320
Query: 162 FSGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
G D + +W + +D H +RV A++ DG L +A D+ + W + D
Sbjct: 321 THGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
G L+ + V ++DV+ GH+ V + + ++ +L SGS +
Sbjct: 146 GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHH 201
Query: 174 DL-LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE-M 231
D+ +A + TL H S V +A SDG L S G D VV +WD R K T +
Sbjct: 202 DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAA 261
Query: 232 VEAVCAIP 239
V+AV P
Sbjct: 262 VKAVAWCP 269
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 26/228 (11%)
Query: 28 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG------H 80
S DGSF++ G ++I D+ + + T+ G + L+ ++ + SSG H
Sbjct: 143 SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW---NRHVLSSGSRSGAIH 199
Query: 81 SREIRVWD--LSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH 138
++R+ + + TL+ GH G+A G LA+ G D V +WD
Sbjct: 200 HHDVRIANHQIGTLQ------GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF 253
Query: 139 YFKGHKGVVSSILFHPDTDKSLLFSGSD--DATVRVWDLLAKKCVATLDKHFSRVTSMAI 196
H V ++ + P +LL +G D + W+ V T+D S+VTS+
Sbjct: 254 TKTNHNAAVKAVAWCP-WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLIW 311
Query: 197 TSDGSTLISAG--RDKVVNLWDLRD--YSCKLTVPTYEMVEAVCAIPP 240
+ ++S D +++W + ++ +P ++ A+ P
Sbjct: 312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP 359
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 571 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA-VG 629
+ T +GH+S V ++ + G Q+ S G D +V++W R+ T H + A+A
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 630 KKTEMFATGGS--DALVNLWHDST 651
++ + ATGG D ++ W+ +T
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAAT 293
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA-D 599
SV++S + G+ + I+ + + L+T GH + R L+ ++S G+
Sbjct: 139 SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA---RVGCLSWNRHVLSSGSRS 195
Query: 600 GLVKLWTVR-TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
G + VR I T H ++ LA A+GG+D +V +W
Sbjct: 196 GAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 54 STIEGGSDTITALALSPDDKLLFSSG--HSREIRVWDLSTLKCLRS--WKGHDGPAIGMA 109
+T++ GS +T+L SP K + S+ + +W S+ + HD + A
Sbjct: 298 NTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA 356
Query: 110 CHPSGGLLATAGADRKVLVWDVDGG 134
P G +L+TA +D + W V G
Sbjct: 357 LSPDGRILSTAASDENLKFWRVYDG 381
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 61/228 (26%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 470
GH ++++ L L+S S DHT+ +W
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 471 --------FDGLSDDAEQPM-------NLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 514
F ++DD + + K +V AH ++N L+ P ++ ++ TGS
Sbjct: 237 WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 515 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 566
D+T +W L +L + + TF HK I+ V +SP ++ ++ +SG D+ + +W +S
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356
Query: 567 ------DG--SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLW 605
DG L GHT+ + S+ ++ S D + ++W
Sbjct: 357 SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 99 KGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGF-------CTHYFKGHKGVVSSI 150
+GH G++ + + G L +A D V +WD++ G F GH VV +
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 151 LFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAITSDGSTLISAG 207
+H +SL S +DD + +WD + K +D H + V ++ +++ G
Sbjct: 236 AWHL-LHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 208 R-DKVVNLWDLRDYSCKL 224
DK V LWDLR+ KL
Sbjct: 295 SADKTVALWDLRNLKLKL 312
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 15/215 (6%)
Query: 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 378
LL + D + L+ P++ + G++ + D+ + E + +++
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 379 QVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCV 434
++D S + S +++ H+ V CL S + ++ TGS D +V LWD + + +
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS--EFILATGSADKTVALWDLRNLKLKL 312
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL-----SDDAEQ-PMNLKAKA 488
H + V +S + L S +D + VW + ++DAE P L
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL--LF 370
Query: 489 VVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWR 522
+ H I+ + PN+ ++C+ S+D +W+
Sbjct: 371 IHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 116 LLATAGADRKVLVWDVDGGFCT---HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
L + D+K+ +WD + H H V+ + F+P ++ +L +GS D TV +
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE-FILATGSADKTVAL 302
Query: 173 WDLLAKKC-VATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDL 217
WDL K + T + H + + + T++ S+G D+ +N+WDL
Sbjct: 303 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 33 FIACACGESINIVDL-SNASIKST--IEGGSDTITALALSPDDKLLFSSGHS-REIRVWD 88
F + A + + I D SN + K + ++ + + L+ +P + + ++G + + + +WD
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 89 LSTLKC-LRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDV 131
L LK L +++ H + P +LA++G DR++ VWD+
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 37 ACGESINIVDLSNASIK-STIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLKC 94
+ +++ + DL N +K T E D I + SP ++ +L SSG R + VWDLS +
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354
Query: 95 LRSWK-GHDGPAIGMACHPSGGLLA 118
+S + DGP + H GG A
Sbjct: 355 EQSAEDAEDGPPELLFIH--GGHTA 377
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 490 VAAHGKDINSLAVAPNDSL-VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548
+ + +NS+ P+ + +GS D T ++ P TF H + + SV ++P
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 549 QVVITASGDKTIKIWSISDGSCLKTFE-------GHTSSVLRASFLTRGAQIVSCGADGL 601
+ + GD TI +++ DG+ FE H+ SV ++ G +I S AD
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 262
Query: 602 VKLWTVRT 609
+K+W V T
Sbjct: 263 IKIWNVAT 270
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 96/255 (37%), Gaps = 39/255 (15%)
Query: 426 WDSESRCCVGVG---------------------TGHMGAVGAVAFSKKLQNFLVSGSSDH 464
WDSES+ VG TG A+ +V F ++SGS D+
Sbjct: 111 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170
Query: 465 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524
T+ + F+G K K+ H K ++S+ P+ SL + D T ++
Sbjct: 171 TVAI--FEGPP--------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220
Query: 525 DLVSVVTFR-------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-G 576
D F H ++ + +SP + +AS DKTIKIW+++ KT G
Sbjct: 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280
Query: 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 636
+ + +VS A+G + G H I AL+ +
Sbjct: 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF 340
Query: 637 TGGSDALVNLWHDST 651
+ ++ +N W ST
Sbjct: 341 SADAEGHINSWDIST 355
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 104/499 (20%), Positives = 190/499 (38%), Gaps = 96/499 (19%)
Query: 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREI-----------RVWDLSTLKCLRSWKG 100
KST + + ++ +PD L S+G I V++ +LK +
Sbjct: 182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV----A 237
Query: 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160
H G G+ P G +A+A AD+ + +W+V K K + D+ L
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVA------TLKVEKTIPVGTRIE---DQQL 288
Query: 161 LFSGSDDATVRV----WDLLAKKCVATLDK----HFSRVTSMAITSDGSTLISAGRDKVV 212
+ A V + + + ++D+ H +T+++ ++DG TL SA + +
Sbjct: 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHI 348
Query: 213 NLWDLRDYSCKLTVPTYEMVEA--VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 270
N WD+ S ++ + V A + I S D F S++ + +
Sbjct: 349 NSWDI---STGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH----------LKVVPA 395
Query: 271 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330
G G+ D SK A L S L V+AD + +
Sbjct: 396 GGSGV-------------------------DSSK---AVANKLSSQPLGLAVSADGDIAV 427
Query: 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY 390
+ L++ + YN + L ++Q++AV +V VY LS S S
Sbjct: 428 AACYKHIAIYSHGKLTEVPISYNSSCVALS---NDKQFVAVGGQDSKVHVYKLSGASVSE 484
Query: 391 V--LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGHMGAVG 445
V + +EI + A S+ +V + V + + T H V
Sbjct: 485 VKTIVHPAEIT----SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA 540
Query: 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505
V++S L +GS D+++ VW+ + SD P+ +K +++ +NS+ + N
Sbjct: 541 CVSWSPDNVR-LATGSLDNSVIVWNMNKPSD---HPIIIKGAHAMSS----VNSV-IWLN 591
Query: 506 DSLVCTGSQDRTACVWRLP 524
++ + + QD W +P
Sbjct: 592 ETTIVSAGQDSNIKFWNVP 610
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 26/206 (12%)
Query: 25 LVVSSDGSFIACACGESINIVD---LSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS 81
L VS+DG AC + I I L+ I S + +ALS D + + G
Sbjct: 417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPI-------SYNSSCVALSNDKQFVAVGGQD 469
Query: 82 REIRVWDLS-----TLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF- 135
++ V+ LS +K + H +A +G L RKV+ + V F
Sbjct: 470 SKVHVYKLSGASVSEVKTIV----HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525
Query: 136 --CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL--LAKKCVATLDKHFSRV 191
T+ + H V+ + + PD + L +GS D +V VW++ + + H
Sbjct: 526 LAHTNSWTFHTAKVACVSWSPDNVR--LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS 583
Query: 192 TSMAITSDGSTLISAGRDKVVNLWDL 217
+ I + +T++SAG+D + W++
Sbjct: 584 VNSVIWLNETTIVSAGQDSNIKFWNV 609
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Query: 83 EIRVWDLS-TLKCLRSW-KGHDGPAIGMACHPSGGLLATAGADRKVL--VWDVDGGFCTH 138
+R+WD + T L++ GP ++ +A G R+ V+ D G
Sbjct: 82 NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 141
Query: 139 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS 198
G ++S+ F P ++ SGSDD TV +++ K +T +H V S+
Sbjct: 142 NLTGQARAMNSVDFKPSRPFRII-SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200
Query: 199 DGSTLISAGRDKVVNLWDLRD 219
DGS S G D + L++ D
Sbjct: 201 DGSLFASTGGDGTIVLYNGVD 221
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 20 YGGGPLVVSSDGSFIACACGES-INIVDLSNASIK--STIEGGSDTITALALSPDDKLLF 76
Y + +S+D F+A +S +++ LS AS+ TI ++ IT++A S + L
Sbjct: 449 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE-ITSVAFSNNGAFLV 507
Query: 77 SSGHSREIRVWDLST---LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132
++ SR++ + ++ L SW H ++ P LAT D V+VW+++
Sbjct: 508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 94/466 (20%), Positives = 182/466 (39%), Gaps = 82/466 (17%)
Query: 140 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-------KHFSRVT 192
F H V S+ ++PD SL S D T+ +++ + + H V
Sbjct: 186 FGEHTKFVHSVRYNPD--GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243
Query: 193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVE-----------AVCAIPPG 241
+ + DG+ + SA DK + +W++ + T+P +E A+ +I
Sbjct: 244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI--- 300
Query: 242 SAFDSFLSSYNQQ--TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299
+ + F++ N + +I + R + +AD L+ + S++
Sbjct: 301 -SANGFINFVNPELGSIDQVRYGHNKAITALSS-------SADGKTLFSADAEGHINSWD 352
Query: 300 MDD--SKRGF--TAATVL-----PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 350
+ S R F AT++ S L V+ D L + VP + SK +
Sbjct: 353 ISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV-----VPAGGSGVDSSKAVA 407
Query: 351 G-YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC--AL 407
+ + L L + + +AVA + + +Y + +E+ + ++ AL
Sbjct: 408 NKLSSQPLGLAVSADGD--IAVAACYKHIAIYSHGKL---------TEVPISYNSSCVAL 456
Query: 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTI 466
S+ K + G +D+ V ++ V T H + +VAFS FLV ++D +
Sbjct: 457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN-GAFLV--ATDQSR 513
Query: 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL--P 524
KV + ++++ E L H + ++ +P++ + TGS D + VW + P
Sbjct: 514 KVIPYS-VANNFE----LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568
Query: 525 DLVSVVTFRGHKRG-----IWSVEFSPVDQVVITASGDKTIKIWSI 565
++ H IW E +++A D IK W++
Sbjct: 569 SDHPIIIKGAHAMSSVNSVIWLNE-----TTIVSAGQDSNIKFWNV 609
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 15/166 (9%)
Query: 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506
VA S Q F+ G D + V+ G S + K +V H +I S+A + N
Sbjct: 454 VALSNDKQ-FVAVGGQDSKVHVYKLSGASVS-------EVKTIV--HPAEITSVAFSNNG 503
Query: 507 SLVCTGSQDRTACVWRLPD---LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW 563
+ + Q R + + + L ++ H + V +SP + + T S D ++ +W
Sbjct: 504 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563
Query: 564 SISDGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607
+++ S + H S + + IVS G D +K W V
Sbjct: 564 NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 32 SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST 91
+ ++ + IN V+ SI G + ITAL+ S D K LFS+ I WD+ST
Sbjct: 296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 61/230 (26%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 470
GH ++++ L L+S S DHTI +W
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 471 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 514
F ++DD + K V AH ++N L+ P ++ ++ TGS
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 294
Query: 515 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 566
D+T +W L +L + + +F HK I+ V++SP ++ ++ +SG D+ + +W +S
Sbjct: 295 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ 354
Query: 567 ------DG--SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 607
DG L GHT+ + S+ ++ S D ++++W +
Sbjct: 355 SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 99 KGHDGPAIGMACHPS-GGLLATAGADRKVLVWDV-----DGGF--CTHYFKGHKGVVSSI 150
+GH G++ +P+ G L +A D + +WD+ +G F GH VV +
Sbjct: 174 RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDV 233
Query: 151 LFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAITSDGSTLISAG 207
+H +SL S +DD + +WD + K ++D H + V ++ +++ G
Sbjct: 234 SWHL-LHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 208 R-DKVVNLWDLRDYSCKL 224
DK V LWDLR+ KL
Sbjct: 293 SADKTVALWDLRNLKLKL 310
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 15/216 (6%)
Query: 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 378
LL + D + L+ VP++ + G+ + D+ + E + +++
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 379 QVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCV 434
++D S + S + + H+ V CL S + ++ TGS D +V LWD + + +
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS--EFILATGSADKTVALWDLRNLKLKL 310
Query: 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL-----SDDAEQ-PMNLKAKA 488
H + V +S + L S +D + VW + +DAE P L
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPEL--LF 368
Query: 489 VVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRL 523
+ H I+ + PN+ ++C+ S+D VW++
Sbjct: 369 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 116 LLATAGADRKVLVWDVDGGFCT---HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
L + D+K+++WD + H H V+ + F+P ++ +L +GS D TV +
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSE-FILATGSADKTVAL 300
Query: 173 WDLLAKKC-VATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDL 217
WDL K + + + H + + + T++ S+G D+ +N+WDL
Sbjct: 301 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 55 TIEGGSDTITALALSPDDKLLFSSGHS-REIRVWDLSTLKC-LRSWKGHDGPAIGMACHP 112
+++ + + L+ +P + + ++G + + + +WDL LK L S++ H + P
Sbjct: 268 SVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 327
Query: 113 SG-GLLATAGADRKVLVWDV-------------DGGFCTHYFK-GHKGVVSSILFHPDTD 157
+LA++G DR++ VWD+ DG + GH +S ++P+ +
Sbjct: 328 HNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN-E 386
Query: 158 KSLLFSGSDDATVRVWDL 175
++ S S+D ++VW +
Sbjct: 387 PWVICSVSEDNIMQVWQM 404
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 37 ACGESINIVDLSNASIK-STIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLKC 94
+ +++ + DL N +K + E D I + SP ++ +L SSG R + VWDLS +
Sbjct: 293 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE 352
Query: 95 LRSWK-GHDGPAIGMACHPSGGLLA 118
+S + DGP + H GG A
Sbjct: 353 EQSPEDAEDGPPELLFIH--GGHTA 375
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 532 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 587
+ GH I ++F P D ++++ S D +++W+I + + F EGH VL A +
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 588 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 622
G +I+SCG D +KLW + + + +YD + +K
Sbjct: 166 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 204
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 32/218 (14%)
Query: 72 DKLLFSSGHSREIRVWDLST---LKCLRSWKGHDGPAIGMAC------HPSGGLLATAGA 122
D L+F++ S + +++ + ++ L+S+ D C + S LLA AG+
Sbjct: 29 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 88
Query: 123 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182
+ + + C ++ GH ++ + FHP D +LL S S D +R+W++ VA
Sbjct: 89 RGIIRIINPITMQCIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVA 147
Query: 183 TL---DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239
+ H V S G ++S G D + LW + + M+ A+
Sbjct: 148 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW---------RINSKRMMNAI---- 194
Query: 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR 277
++D YN + S +IHF R I R
Sbjct: 195 -KESYD-----YNPNKTNRPFISQKIHFPDFSTRDIHR 226
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 404 TCALS-----SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 458
TCA + S +L V GS+ +R+ + + C+ GH A+ + F + N L+
Sbjct: 69 TCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 127
Query: 459 SGSSDHTIKVWS 470
S S DH +++W+
Sbjct: 128 SVSKDHALRLWN 139
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ-IVSCGA 598
W+ + + ++ A I+I + C+K + GH +++ F R ++S
Sbjct: 72 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 131
Query: 599 DGLVKLWTVRTGECIATY---DKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
D ++LW ++T +A + + H D++ + E + G D + LW
Sbjct: 132 DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428
LAVA + +++ + +M C GH + L L+++ SKD+++RLW+
Sbjct: 83 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNI 140
Query: 429 ESRCCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFD 472
++ V + G G V A L ++S DH++K+W +
Sbjct: 141 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 186
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 532 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 587
+ GH I ++F P D ++++ S D +++W+I + + F EGH VL A +
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 588 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 622
G +I+SCG D +KLW + + + +YD + +K
Sbjct: 207 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 245
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 32/218 (14%)
Query: 72 DKLLFSSGHSREIRVWDLST---LKCLRSWKGHDGPAIGMAC------HPSGGLLATAGA 122
D L+F++ S + +++ + ++ L+S+ D C + S LLA AG+
Sbjct: 70 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 129
Query: 123 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182
+ + + C ++ GH ++ + FHP D +LL S S D +R+W++ VA
Sbjct: 130 RGIIRIINPITMQCIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVA 188
Query: 183 TL---DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239
+ H V S G ++S G D + LW + + M+ A+
Sbjct: 189 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW---------RINSKRMMNAI---- 235
Query: 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR 277
++D YN + S +IHF R I R
Sbjct: 236 -KESYD-----YNPNKTNRPFISQKIHFPDFSTRDIHR 267
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 404 TCALS-----SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 458
TCA + S +L V GS+ +R+ + + C+ GH A+ + F + N L+
Sbjct: 110 TCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 168
Query: 459 SGSSDHTIKVWS 470
S S DH +++W+
Sbjct: 169 SVSKDHALRLWN 180
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ-IVSCGA 598
W+ + + ++ A I+I + C+K + GH +++ F R ++S
Sbjct: 113 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 172
Query: 599 DGLVKLWTVRTGECIATY---DKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
D ++LW ++T +A + + H D++ + E + G D + LW
Sbjct: 173 DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428
LAVA + +++ + +M C GH + L L+++ SKD+++RLW+
Sbjct: 124 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNI 181
Query: 429 ESRCCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFD 472
++ V + G G V A L ++S DH++K+W +
Sbjct: 182 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 227
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 532 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 587
+ GH I ++F P D ++++ S D +++W+I + + F EGH VL A +
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 588 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 622
G +I+SCG D +KLW + + + +YD + +K
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 32/218 (14%)
Query: 72 DKLLFSSGHSREIRVWDLST---LKCLRSWKGHDGPAIGMAC------HPSGGLLATAGA 122
D L+F++ S + +++ + ++ L+S+ D C + S LLA AG+
Sbjct: 33 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 92
Query: 123 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182
+ + + C ++ GH ++ + FHP D +LL S S D +R+W++ VA
Sbjct: 93 RGIIRIINPITMQCIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVA 151
Query: 183 TL---DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239
+ H V S G ++S G D + LW + + M+ A+
Sbjct: 152 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW---------RINSKRMMNAI---- 198
Query: 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR 277
++D YN + S +IHF R I R
Sbjct: 199 -KESYD-----YNPNKTNRPFISQKIHFPDFSTRDIHR 230
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 404 TCALS-----SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 458
TCA + S +L V GS+ +R+ + + C+ GH A+ + F + N L+
Sbjct: 73 TCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 131
Query: 459 SGSSDHTIKVWS 470
S S DH +++W+
Sbjct: 132 SVSKDHALRLWN 143
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ-IVSCGA 598
W+ + + ++ A I+I + C+K + GH +++ F R ++S
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 135
Query: 599 DGLVKLWTVRTGECIATY---DKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
D ++LW ++T +A + + H D++ + E + G D + LW
Sbjct: 136 DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428
LAVA + +++ + +M C GH + L L+++ SKD+++RLW+
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNI 144
Query: 429 ESRCCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFD 472
++ V + G G V A L ++S DH++K+W +
Sbjct: 145 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 532 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 587
+ GH I ++F P D ++++ S D +++W+I + + F EGH VL A +
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 588 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 622
G +I+SCG D +KLW + + + +YD + +K
Sbjct: 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 209
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 32/218 (14%)
Query: 72 DKLLFSSGHSREIRVWDLST---LKCLRSWKGHDGPAIGMAC------HPSGGLLATAGA 122
D L+F++ S + +++ + ++ L+S+ D C + S LLA AG+
Sbjct: 34 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93
Query: 123 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182
+ + + C ++ GH ++ + FHP D +LL S S D +R+W++ VA
Sbjct: 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVA 152
Query: 183 TL---DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239
+ H V S G ++S G D + LW + + M+ A+
Sbjct: 153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW---------RINSKRMMNAI---- 199
Query: 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR 277
++D YN + S +IHF R I R
Sbjct: 200 -KESYD-----YNPNKTNRPFISQKIHFPDFSTRDIHR 231
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 404 TCALS-----SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 458
TCA + S +L V GS+ +R+ + + C+ GH A+ + F + N L+
Sbjct: 74 TCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 132
Query: 459 SGSSDHTIKVWS 470
S S DH +++W+
Sbjct: 133 SVSKDHALRLWN 144
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ-IVSCGA 598
W+ + + ++ A I+I + C+K + GH +++ F R ++S
Sbjct: 77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 136
Query: 599 DGLVKLWTVRTGECIATY---DKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
D ++LW ++T +A + + H D++ + E + G D + LW
Sbjct: 137 DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428
LAVA + +++ + +M C GH + L L+++ SKD+++RLW+
Sbjct: 88 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNI 145
Query: 429 ESRCCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFD 472
++ V + G G V A L ++S DH++K+W +
Sbjct: 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 532 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 587
+ GH I ++F P D ++++ S D +++W+I + + F EGH VL A +
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 588 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 622
G +I+SCG D +KLW + + + +YD + +K
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 32/218 (14%)
Query: 72 DKLLFSSGHSREIRVWDLST---LKCLRSWKGHDGPAIGMAC------HPSGGLLATAGA 122
D L+F++ S + +++ + ++ L+S+ D C + S LLA AG+
Sbjct: 33 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 92
Query: 123 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182
+ + + C ++ GH ++ + FHP D +LL S S D +R+W++ VA
Sbjct: 93 RGIIRIINPITMQCIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVA 151
Query: 183 TL---DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239
+ H V S G ++S G D + LW + + M+ A+
Sbjct: 152 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW---------RINSKRMMNAI---- 198
Query: 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR 277
++D YN + S +IHF R I R
Sbjct: 199 -KESYD-----YNPNKTNRPFISQKIHFPDFSTRDIHR 230
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 404 TCALS-----SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 458
TCA + S +L V GS+ +R+ + + C+ GH A+ + F + N L+
Sbjct: 73 TCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 131
Query: 459 SGSSDHTIKVWS 470
S S DH +++W+
Sbjct: 132 SVSKDHALRLWN 143
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ-IVSCGA 598
W+ + + ++ A I+I + C+K + GH +++ F R ++S
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 135
Query: 599 DGLVKLWTVRTGECIATY---DKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
D ++LW ++T +A + + H D++ + E + G D + LW
Sbjct: 136 DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428
LAVA + +++ + +M C GH + L L+++ SKD+++RLW+
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNI 144
Query: 429 ESRCCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFD 472
++ V + G G V A L ++S DH++K+W +
Sbjct: 145 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 527 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586
+ + GH+R + V+++ ++ + S D + +W +G L T +GHT ++
Sbjct: 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
Query: 587 LTRGAQIVSCGADGLVKLWTVRTGECIATY 616
V+ AD +KLW V G+C+AT+
Sbjct: 83 DCFTKYCVTGSADYSIKLWDVSNGQCVATW 112
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 549
+ H + + + L+ + S+D +A VW + + T GH IWS++ +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 550 VVITASGDKTIKIWSISDGSCLKTFE 575
+T S D +IK+W +S+G C+ T++
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWK 113
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 568 GSCLKTFE--GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 625
GS +K + GH + + + G + SC D +W GE + T D H IW+
Sbjct: 20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWS 79
Query: 626 LAVGKKTEMFATGGSDALVNLW 647
+ V T+ TG +D + LW
Sbjct: 80 IDVDCFTKYCVTGSADYSIKLW 101
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS 201
GH+ ++ + ++ + D LLFS S D++ VW L + + TLD H + S+ +
Sbjct: 30 GHERPLTQVKYNKEGD--LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 202 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250
++ D + LWD+ + C T + V+ V P G+ F + L +
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDN 136
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 125/328 (38%), Gaps = 38/328 (11%)
Query: 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCAL 407
+L G+ + +K+ E + + + + Y L+ L GH+ + +D
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-TLDGHTGTIWSIDVDCF 85
Query: 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV----SGSSD 463
+ VTGS D S++LWD + CV + V V FS FL +
Sbjct: 86 TK---YCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNP 141
Query: 464 HTIKVWSFD------GLSDDAEQPMNLKAKAVVAAHGKDINSLAV-APNDSLVCTGSQDR 516
+I ++ + L+ +E+P++ ++ G D ++A + + G +D
Sbjct: 142 GSINIYEIERDSATHELTKVSEEPIH----KIITHEGLDAATVAGWSTKGKYIIAGHKDG 197
Query: 517 TACVWRLPDLVSVV-TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE 575
+ + + V + H++ I ++FSP IT+S D + +S LK +E
Sbjct: 198 KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257
Query: 576 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG---------------ECIATYDKHE 620
T L + +T + + G K T + E I H
Sbjct: 258 --TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF 315
Query: 621 DKIWALAVGKKTEMFATGGSDALVNLWH 648
+ +A+ + +A+GG D + L H
Sbjct: 316 GPLNTVAISPQGTSYASGGEDGFIRLHH 343
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131
+ L F H + I++ GH+ P + + G LL + D VW
Sbjct: 14 ENLYFQGSHMKAIKL------------TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYS 61
Query: 132 DGGFCTHYFKGHKGVVSSILFHPDTD--KSLLFSGSDDATVRVWDLLAKKCVAT 183
G GH G + SI D D +GS D ++++WD+ +CVAT
Sbjct: 62 LNGERLGTLDGHTGTIWSI----DVDCFTKYCVTGSADYSIKLWDVSNGQCVAT 111
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/194 (19%), Positives = 80/194 (41%), Gaps = 18/194 (9%)
Query: 33 FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL 92
+C+ S ++ N T++G + TI ++ + K + I++WD+S
Sbjct: 47 LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106
Query: 93 KCLRSWKGHDGPAIGMACHPSGG-LLATAGADRK----VLVWDVDGGFCTHYFKG----- 142
+C+ +WK P + P G LA K + +++++ TH
Sbjct: 107 QCVATWKS-PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165
Query: 143 ------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-KCVATLDKHFSRVTSMA 195
H+G+ ++ + T + +G D + +D+ + V ++D H ++ M
Sbjct: 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQ 225
Query: 196 ITSDGSTLISAGRD 209
+ D + I++ RD
Sbjct: 226 FSPDLTYFITSSRD 239
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 7/180 (3%)
Query: 32 SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPD-DKLLFSSGHSREIRVWDLS 90
++IA + ++I+++D+++ + +TI GS+ A+ +SPD K+ ++ HS ++ + D +
Sbjct: 4 AYIANSESDNISVIDVTSNKVTATIPVGSNPXGAV-ISPDGTKVYVANAHSNDVSIIDTA 62
Query: 91 TLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSS 149
T + + P G+A P G + T A + V D K K +
Sbjct: 63 TNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNXASSTLSVIDTTSNTVAGTVKTGKSPL-G 120
Query: 150 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209
+ PD K L + + D TV V + + K + T+ S +A+T DG+ + A D
Sbjct: 121 LALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP-KGIAVTPDGTKVYVANFD 178
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 108/492 (21%), Positives = 186/492 (37%), Gaps = 86/492 (17%)
Query: 78 SGHSREIRVWDLSTLKCLRSWK-GHDGPAIGMACHP------------------------ 112
SGHS+ I L + +RS G DG + P
Sbjct: 157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 216
Query: 113 -SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG-SDDATV 170
SG + T G+DRK+ +D G Y + + V +F S F+ DAT+
Sbjct: 217 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATI 276
Query: 171 RVWDLLAKKCVA--TLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVP 227
RVWD+ KCV TLDK + + + G+ +IS D +N ++L T+
Sbjct: 277 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTIS 336
Query: 228 TYEMVEAVCAIPP--GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285
+ + P ++D + ++ ++ + +L IV + N+ A
Sbjct: 337 GHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNL-----------IVSLDNS-KAQ 384
Query: 286 LYEQKSSDVTISFE-MDDSKRGFTAATVLPSNQGLLCV-TADQQLLLYTTVEVPEKKMEL 343
Y S D T+ + + G +N G V T D LL+ + ++
Sbjct: 385 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSF-----TGDI 439
Query: 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ---VQVYDLSSMSCSYVLAGHSEIVL 400
I S RL + + Y+AV +E+ +QV+ LS + S+ L + +
Sbjct: 440 IKSVRLNSPGSAV------SLSQNYVAVG--LEEGNTIQVFKLSDLEVSFDL--KTPLRA 489
Query: 401 CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV----GVGTGHMGAVGAVAFSKKL--- 453
++S + I G + L+D +SR T + A+ K
Sbjct: 490 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 549
Query: 454 ---QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510
++ + +GS D I ++S ++PM K + AH +N+L +LV
Sbjct: 550 EIEEDLVATGSLDTNIFIYS-------VKRPM--KIIKALNAHKDGVNNLLWETPSTLVS 600
Query: 511 TGSQDRTACVWR 522
+G+ AC+ R
Sbjct: 601 SGAD---ACIKR 609
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 30/151 (19%)
Query: 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG------------HKR 537
V+ H + IN+ C Q R + D SVV ++G HK+
Sbjct: 156 VSGHSQRINA----------CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 205
Query: 538 G--IWSVEFSP-VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR---GA 591
G + VEFSP + VIT D+ I + G LK E V F
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 265
Query: 592 QIVSCGADGLVKLWTVRTGECIA--TYDKHE 620
+ + GAD +++W V T +C+ T DK +
Sbjct: 266 KFATVGADATIRVWDVTTSKCVQKWTLDKQQ 296
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 66 LALSPDDKLLFSS-GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124
ALS D F++ G IRVWD++T KC++ W D +G + G++AT
Sbjct: 257 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT-LDKQQLG---NQQVGVVATGNG-- 310
Query: 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL----LFSGSDDATVRVW 173
+++ +DG Y GH V+ +I H +L L SGS D + W
Sbjct: 311 RIISLSLDGTL-NFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEW 362
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 549 QVVITASGDKTIKIWSISDGSCLK--TFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLW 605
Q T D TI++W ++ C++ T + + + G +I+S DG + +
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 324
Query: 606 TVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
+ E + T H I AL V +G D + W S+
Sbjct: 325 ELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS 366
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 103/275 (37%), Gaps = 52/275 (18%)
Query: 414 IVTGSKDNSVRLWD--SESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWS 470
+ T S D ++++++ E+ + TGH G V V ++ K L S S D + +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPD--L 526
E+ AV A H +NS+ AP++ L+ S D V +
Sbjct: 84 --------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135
Query: 527 VSVVTFRGHKRGIWSVEFSPV-------------DQVVITASGDKTIKIWSI-SDGSCL- 571
S + H G+ S ++P + +T D +KIW SD
Sbjct: 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 572 --KTFEGHTS---------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-----CIAT 615
T EGH+ +VL S+L +Q +C +WT + +
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC------IIWTQDNEQGPWKKTLLK 249
Query: 616 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650
+K D +W + + A G D V LW ++
Sbjct: 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 25/206 (12%)
Query: 73 KLLFSSGHSREIRVWDLS--TLKCLRSWKGHDGPAIGMA-CHPS-GGLLATAGADRKVLV 128
K L + + I+++++ T K + + GH+GP + HP G +LA+ D KVL+
Sbjct: 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81
Query: 129 WDVDGGFCTHY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT--L 184
W + G + H V+S+ + P LL S D V V + + +
Sbjct: 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII 141
Query: 185 DKHFSRVTSMA-----ITSDGS--------TLISAGRDKVVNLW----DLRDYSCKLTVP 227
D H V S + I DG ++ G D +V +W D + Y + T+
Sbjct: 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201
Query: 228 TYEMVEAVCAIPPGSAFDSFLSSYNQ 253
+ A P S+L+S +Q
Sbjct: 202 GHSDWVRDVAWSPTVLLRSYLASVSQ 227
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS--CLKTFEGHTSSVLRASF 586
VV H I + + T S DKTIKI+ + + + T GH V R +
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 587 L--TRGAQIVSCGADGLVKLWTVRTG 610
G + SC DG V +W G
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEENG 87
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 74/182 (40%), Gaps = 23/182 (12%)
Query: 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS--VVTFRGHKRGIWSVEFS- 545
+ AH + I+ + + T S D+T ++ + + T GH+ +W V+++
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 546 -PVDQVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTR--GAQIVSCGADG 600
++ + S D + IW +G S + H++SV + G ++ +DG
Sbjct: 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123
Query: 601 LVKLWTVRTGECIATY--DKHEDKI----WALAV---------GKKTEMFATGGSDALVN 645
V + + + D H + WA A K++ F TGG+D LV
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 646 LW 647
+W
Sbjct: 184 IW 185
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 99 KGHDGPAIGMA-CHP-SGGLLATAGADRKVLVWDVDGGFC--THYFKGHKGVVSSILFHP 154
+GH+GP +A HP G +LA+ DRKV++W + G +H GH V+S+ + P
Sbjct: 54 RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP 113
Query: 155 DTDKSLLFSGSDDATVRV 172
+L GS D + +
Sbjct: 114 HDYGLILACGSSDGAISL 131
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 107/283 (37%), Gaps = 64/283 (22%)
Query: 414 IVTGSKDNSVRLWDSESRCCVGVG--TGHMGAVGAVAFSKKLQ-NFLVSGSSDHTIKVWS 470
+ T S D SV+++D + + + GH G V VA++ + N L S S D + +W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS--LVCTGSQDRTACVWRLPDLVS 528
E+ + A H +NS+ AP+D ++ GS D +S
Sbjct: 88 --------EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA---------IS 130
Query: 529 VVTFRG------------HKRGIWSVEFSPV---------------DQVVITASG--DKT 559
++T+ G H G +V ++P + + ASG D
Sbjct: 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL 190
Query: 560 IKIWSISDGSCLK---TFEGHTSSVLRASFLTR----GAQIVSCGADGLVKLWTVRTGEC 612
IK+W + K E H+ V ++ + I SC DG V +WT
Sbjct: 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS 250
Query: 613 IATYD-----KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650
T+ K D +W ++ + A G D V LW +S
Sbjct: 251 -NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 113 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG-SDDATVR 171
SG + T G+DRK+ +D G Y + + V +F S F+ DAT+R
Sbjct: 218 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 277
Query: 172 VWDLLAKKCVA--TLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDL 217
VWD+ KCV TLDK + + + G+ +IS D +N ++L
Sbjct: 278 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 30/151 (19%)
Query: 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG------------HKR 537
V+ H + IN+ C Q R + D SVV ++G HK+
Sbjct: 156 VSGHSQRINA----------CHLKQSRPXRSXTVGDDGSVVFYQGPPFKFSASDRTHHKQ 205
Query: 538 G--IWSVEFSP-VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR---GA 591
G + VEFSP + VIT D+ I + G LK E V F
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 265
Query: 592 QIVSCGADGLVKLWTVRTGECIA--TYDKHE 620
+ + GAD +++W V T +C+ T DK +
Sbjct: 266 KFATVGADATIRVWDVTTSKCVQKWTLDKQQ 296
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 66 LALSPDDKLLFSS-GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124
ALS D F++ G IRVWD++T KC++ W D +G + G++AT
Sbjct: 257 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT-LDKQQLG---NQQVGVVATGNG-- 310
Query: 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL----LFSGSDDATVRVW 173
+++ +DG Y GH V+ +I H +L L SGS D + W
Sbjct: 311 RIISLSLDGTL-NFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIXEW 362
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 549 QVVITASGDKTIKIWSISDGSCLK--TFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLW 605
Q T D TI++W ++ C++ T + + + G +I+S DG + +
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 324
Query: 606 TVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
+ E + T H I AL V +G D + W
Sbjct: 325 ELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 103/275 (37%), Gaps = 52/275 (18%)
Query: 414 IVTGSKDNSVRLWD--SESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWS 470
+ T S D ++++++ E+ + TGH G V V ++ K L S S D + +W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPD--L 526
E+ AV A H +NS+ AP++ L+ S D V +
Sbjct: 86 --------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137
Query: 527 VSVVTFRGHKRGIWSVEFSPV-------------DQVVITASGDKTIKIWSI-SDGSCL- 571
S + H G+ S ++P + +T D +KIW SD
Sbjct: 138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 197
Query: 572 --KTFEGHT---------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-----CIAT 615
T EGH+ +VL S+L +Q +C +WT + +
Sbjct: 198 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC------IIWTQDNEQGPWKKTLLK 251
Query: 616 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650
+K D +W + + A G D V LW ++
Sbjct: 252 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 25/206 (12%)
Query: 73 KLLFSSGHSREIRVWDLS--TLKCLRSWKGHDGPAIGM-ACHPS-GGLLATAGADRKVLV 128
K L + + I+++++ T K + + GH+GP + HP G +LA+ D KVL+
Sbjct: 24 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83
Query: 129 WDVDGGFCTH--YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT--L 184
W + G + H V+S+ + P LL S D V V + + +
Sbjct: 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII 143
Query: 185 DKHFSRVTSMA-----ITSDGS--------TLISAGRDKVVNLW----DLRDYSCKLTVP 227
D H V S + I DG ++ G D +V +W D + Y + T+
Sbjct: 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 203
Query: 228 TYEMVEAVCAIPPGSAFDSFLSSYNQ 253
+ A P S+L+S +Q
Sbjct: 204 GHSDWVRDVAWSPTVLLRSYLASVSQ 229
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 35/227 (15%)
Query: 266 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325
+ IT ++G++++WN + E SS +T D T T++P+ + D
Sbjct: 78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-----DCSSTVTQITMIPNFDAFAVSSKD 132
Query: 326 QQLLLYTT------VEVPEKKMELI--LSKRLVGYNEEILDLK-FLGEEEQYLAVATNIE 376
Q+++ EV E I ++ + G NE + ++ F+ EE+ L TN+
Sbjct: 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS 192
Query: 377 QVQVYDLSSMSCSYVLAG---HSEI-VLCLDT--CALSSGKILIVTGSKDNSVRLWDSES 430
+V ++D+ ++ ++ H + +C+D C L + G+ + +WD
Sbjct: 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVL-------ILGTTRGIIDIWD--I 243
Query: 431 RCCVGVGTGHMG------AVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471
R V + + G V F K +V GSS + +W+F
Sbjct: 244 RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 103/275 (37%), Gaps = 52/275 (18%)
Query: 414 IVTGSKDNSVRLWD--SESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWS 470
+ T S D ++++++ E+ + TGH G V V ++ K L S S D + +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPD--L 526
E+ AV A H +NS+ AP++ L+ S D V +
Sbjct: 84 --------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135
Query: 527 VSVVTFRGHKRGIWSVEFSPV-------------DQVVITASGDKTIKIWSI-SDGSCL- 571
S + H G+ S ++P + +T D +KIW SD
Sbjct: 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 572 --KTFEGHT---------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-----CIAT 615
T EGH+ +VL S+L +Q +C +WT + +
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC------IIWTQDNEQGPWKKTLLK 249
Query: 616 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650
+K D +W + + A G D V LW ++
Sbjct: 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 23/186 (12%)
Query: 91 TLKCLRSWKGHDGPAIGM-ACHPS-GGLLATAGADRKVLVWDVDGGFCTH--YFKGHKGV 146
T K + + GH+GP + HP G +LA+ D KVL+W + G + H
Sbjct: 42 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS 101
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT--LDKHFSRVTSMA-----ITSD 199
V+S+ + P LL S D V V + + +D H V S + I D
Sbjct: 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 200 GS--------TLISAGRDKVVNLW----DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF 247
G ++ G D +V +W D + Y + T+ + A P S+
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 248 LSSYNQ 253
L+S +Q
Sbjct: 222 LASVSQ 227
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM-ACHPSGGLLAT 119
D + L++ D S G ++VWDLS L+S+ H + AC + +
Sbjct: 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLS 199
Query: 120 AGADRKVLVWDVDG-------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
G D ++L+WD FC + +S+ +HP+ D + G + V +
Sbjct: 200 CGEDGRILLWDTRKPKPATRIDFC-----ASDTIPTSVTWHPEKDDTFA-CGDETGNVSL 253
Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 206
++ T H +T +A + S +++
Sbjct: 254 VNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLAS 287
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSV-LRASFLTRGAQIVSCGADGLVKLWTVR 608
++ D ++K+W +S + LK++ H+S V A+ + +SCG DG + LW R
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 34/133 (25%)
Query: 156 TDKSLLFSGSDDATVRVWDLLAKKCVATLD----KHFSRVTSMAITSDGSTLISAGRDKV 211
++K +L + SD V +W++L K+ + +H V ++++ SDG+ +S G+D
Sbjct: 104 SEKGILVA-SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162
Query: 212 VNLWDLRDYSCKLTVPTYEM----VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 267
V +WDL S K + +Y V V A P + TI F
Sbjct: 163 VKVWDL---SQKAVLKSYNAHSSEVNCVAACP------------GKDTI----------F 197
Query: 268 ITVGERGIVRMWN 280
++ GE G + +W+
Sbjct: 198 LSCGEDGRILLWD 210
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 551 VITASGDKTIKIWSISDGSCL-----KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 605
++ AS +++W I + L +E H V S + G Q VS G D VK+W
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166
Query: 606 TVRTGECIATYDKHEDKIWALAV--GKKTEMFATGGSDALVNLW 647
+ + +Y+ H ++ +A GK T +F + G D + LW
Sbjct: 167 DLSQKAVLKSYNAHSSEVNCVAACPGKDT-IFLSCGEDGRILLW 209
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 366 EQYLAVATNIEQVQVYDL----SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421
E+ + VA++ V+++++ S + + H +IV L ++ S V+G KD
Sbjct: 105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL---SVFSDGTQAVSGGKDF 161
Query: 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469
SV++WD + + H V VA +S D I +W
Sbjct: 162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 27/211 (12%)
Query: 414 IVTGSKDNSVRLWD----SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469
+ GSK + LW+ + G+G G G++ + F+ N + S + T ++
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPLNTNQFYASSMEGTTRLQ 192
Query: 470 SFDGLSDDAEQPMNLKAKAVVAAHGKDIN----SLAVAPNDSLVCTGSQDRTACVWRLPD 525
F G N+ V A IN SL V+ + +V TG + + D
Sbjct: 193 DFKG---------NI---LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM-D 239
Query: 526 LVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTF---EGHTSSV 581
+ R HK+ + V +P D + TAS D+T+KIW + +F H V
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGEC 612
A F GA++++ +++++ +C
Sbjct: 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDC 330
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 116 LLATAGADRKVLVWD---VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
LATA D+ V +WD V G Y H+ V++ F PD + L + + +RV
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR--LLTTDQKSEIRV 322
Query: 173 WDLLAKKCVATL----DKHFSRVTSM-AITSDGSTLISAGR 208
+ C L +HF +T + A LI GR
Sbjct: 323 YSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 363
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 414 IVTGSKDNSVRLWD----SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469
+ GSK + LW+ + G+G G G++ + F+ N + S + T ++
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPLNTNQFYASSMEGTTRLQ 192
Query: 470 SFDGLSDDAEQPMNLKAKAVVAAHGKDIN----SLAVAPNDSLVCTGSQDRTACVWRLPD 525
F G N+ V A IN SL V+ + +V TG + + D
Sbjct: 193 DFKG---------NI---LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM-D 239
Query: 526 LVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTF---EGHTSSV 581
+ R HK+ + V +P D + TAS D+T+KIW + +F H V
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622
A F GA++++ +++++ +C H +
Sbjct: 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 340
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 116 LLATAGADRKVLVWD---VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
LATA D+ V +WD V G Y H+ V++ F PD + L + + +RV
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR--LLTTDQKSEIRV 322
Query: 173 WDLLAKKCVATL----DKHFSRVTSM-AITSDGSTLISAGR 208
+ C L +HF +T + A LI GR
Sbjct: 323 YSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 363
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 102/270 (37%), Gaps = 42/270 (15%)
Query: 414 IVTGSKDNSVRLWD--SESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWS 470
+ T S D ++++++ E+ + TGH G V V ++ K L S S D + +W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPD--L 526
E+ AV A H +NS+ AP++ ++ S D V +
Sbjct: 84 --------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135
Query: 527 VSVVTFRGHKRGIWSVEFSPV-------------DQVVITASGDKTIKIWSI-SDGSCL- 571
S + H G+ S ++P + +T D +KIW SD
Sbjct: 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 572 --KTFEGHTSSVLRASF----LTRGAQIVSCGADGLVKLWTVRTGE-----CIATYDKHE 620
T EGH+ V ++ L R + + S D +WT + + +K
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLR-SYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 621 DKIWALAVGKKTEMFATGGSDALVNLWHDS 650
D +W + + A G D V LW ++
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 23/186 (12%)
Query: 91 TLKCLRSWKGHDGPAIGM-ACHPS-GGLLATAGADRKVLVWDVDGGFCTH--YFKGHKGV 146
T K + + GH+GP + HP G +LA+ D KV++W + G + H
Sbjct: 42 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS 101
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT--LDKHFSRVTSMA-----ITSD 199
V+S+ + P +L S D V V + + +D H V S + I D
Sbjct: 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 200 GS--------TLISAGRDKVVNLW----DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF 247
G ++ G D +V +W D + Y + T+ + A P S+
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 248 LSSYNQ 253
++S +Q
Sbjct: 222 MASVSQ 227
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 414 IVTGSKDNSVRLWD----SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469
+ GSK + LW+ + G+G G G++ + F+ N + S + T ++
Sbjct: 136 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPLNTNQFYASSMEGTTRLQ 193
Query: 470 SFDGLSDDAEQPMNLKAKAVVAAHGKDIN----SLAVAPNDSLVCTGSQDRTACVWRLPD 525
F G N+ V A IN SL V+ + +V TG + + D
Sbjct: 194 DFKG---------NI---LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM-D 240
Query: 526 LVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTF---EGHTSSV 581
+ R HK+ + V +P D + TAS D+T+KIW + +F H V
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 300
Query: 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622
A F GA++++ +++++ +C H +
Sbjct: 301 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 341
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 116 LLATAGADRKVLVWD---VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
LATA D+ V +WD V G Y H+ V++ F PD + L + + +RV
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR--LLTTDQKSEIRV 323
Query: 173 WDLLAKKCVATL----DKHFSRVTSM-AITSDGSTLISAGR 208
+ C L +HF +T + A LI GR
Sbjct: 324 YSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 364
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 24/139 (17%)
Query: 508 LVCTGSQDRTACVWRLPDLVSVVTFR------GHKRGIWSVEFSPVDQVVITAS------ 555
L+ TG + T + L L + F + I SV+FSP ++ A
Sbjct: 209 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 268
Query: 556 ---------GDK--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604
G++ ++ + + S + L F H+S V+ SF G + S G DG ++
Sbjct: 269 CITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLRF 327
Query: 605 WTVRTGECIATYDKHEDKI 623
W V+T E I T + H D I
Sbjct: 328 WDVKTKERITTLNMHCDDI 346
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 24/139 (17%)
Query: 508 LVCTGSQDRTACVWRLPDLVSVVTFR------GHKRGIWSVEFSPVDQVVITAS------ 555
L+ TG + T + L L + F + I SV+FSP ++ A
Sbjct: 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 258
Query: 556 ---------GDK--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604
G++ ++ + + S + L F H+S V+ SF G + S G DG ++
Sbjct: 259 CITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLRF 317
Query: 605 WTVRTGECIATYDKHEDKI 623
W V+T E I T + H D I
Sbjct: 318 WDVKTKERITTLNMHCDDI 336
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 61 DTITALALSPDD---KLLFSSGHSREIRVWDL--STLKCLRSWKGHDGPAIGMACHPSGG 115
D+I L+ SP L + + ++R W++ S ++ + H GP + + G
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 116 LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175
+ TA D+ +WD+ + H V +I + + S + +GS D T++ WD
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Query: 176 LAKKCVATL 184
+ + L
Sbjct: 159 RSSNPMMVL 167
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 16/135 (11%)
Query: 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGTGHMGAVGAVA 448
V + + + CL + ++ GS N VR W+ + + H G V V
Sbjct: 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVC 93
Query: 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA--VAPND 506
+S + + S D T K+W D S+ A Q +A H + ++ APN
Sbjct: 94 WSDDGSK-VFTASCDKTAKMW--DLSSNQAIQ---------IAQHDAPVKTIHWIKAPNY 141
Query: 507 SLVCTGSQDRTACVW 521
S V TGS D+T W
Sbjct: 142 SCVMTGSWDKTLKFW 156
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 88 DLSTLKCLRSWKGHDGPAI-------GMACHPSGGLLATAGADRKVLVWDVDG 133
D T KC RS G + A G+A HP G LAT G+D + WD D
Sbjct: 253 DNFTFKCHRS-NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 147 VSSILFHPDT-DKSLLFSGSDDATVRVWDLL--AKKCVATLDKHFSRVTSMAITSDGSTL 203
+ + F P T + L +GS VR W++ + H V + + DGS +
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 204 ISAGRDKVVNLWDL 217
+A DK +WDL
Sbjct: 102 FTASCDKTAKMWDL 115
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 10/114 (8%)
Query: 542 VEFSPVD---QVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRGAQIVSC 596
+ FSP +I S ++ W + D + K + HT VL + G+++ +
Sbjct: 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104
Query: 597 GADGLVKLWTVRTGEC--IATYDKHEDKI-WALAVGKKTEMFATGGSDALVNLW 647
D K+W + + + IA +D I W A M TG D + W
Sbjct: 105 SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVM--TGSWDKTLKFW 156
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 102/268 (38%), Gaps = 42/268 (15%)
Query: 416 TGSKDNSVRLWD--SESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWSFD 472
T S D ++++++ E+ + TGH G V V ++ K L S S D + +W
Sbjct: 26 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWK-- 83
Query: 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND---SLVCTGSQDRTACV-WRLPDLVS 528
E+ AV A H +NS+ AP++ L+ S + + V ++ S
Sbjct: 84 ------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTS 137
Query: 529 VVTFRGHKRGIWSVEFSPV-------------DQVVITASGDKTIKIWSI-SDGSCL--- 571
+ H G+ S ++P + +T D +KIW SD
Sbjct: 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197
Query: 572 KTFEGHTSSVLRASF----LTRGAQIVSCGADGLVKLWTVRTGE-----CIATYDKHEDK 622
T EGH+ V ++ L R + S D +WT + + +K D
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLR-SYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV 256
Query: 623 IWALAVGKKTEMFATGGSDALVNLWHDS 650
+W + + A G D V LW ++
Sbjct: 257 LWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 414 IVTGSKDNSVRLW----DSESRCCVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHTIK 467
VTG DN V++W D+++ GH V VA+S L+++ S S D T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCI 232
Query: 468 VWSFD 472
+W+ D
Sbjct: 233 IWTQD 237
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 96/229 (41%), Gaps = 31/229 (13%)
Query: 413 LIVTGSKDNSVRLWDSESRCC----------VGVGTGHMGAVGAVAFSKKLQNFLVSGSS 462
++ +G + + +WD ++C G + V ++A+++ L + S S
Sbjct: 128 VLASGGNNGEIFIWDM-NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS 186
Query: 463 DHTIKVWSFDG------LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QD 515
+ +W LS + + +VV H K+ +A A TGS D
Sbjct: 187 SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA-------TGSDND 239
Query: 516 RTACVWRLPDLVSVVTF--RGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLK 572
+ +W L + + + +GH++GI S+++ D+ ++ +SG D T+ +W+ L
Sbjct: 240 PSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS 299
Query: 573 TFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHE 620
F + + F + +C + D +++ T++ T D+ E
Sbjct: 300 QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN--LTNTLDEQE 346
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 64/320 (20%), Positives = 130/320 (40%), Gaps = 29/320 (9%)
Query: 165 SDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKL 224
S D+++ +W LLA + S+ + S + L + +K++ L + S +L
Sbjct: 42 STDSSLELWSLLAADSEKP-------IASLQVDSKFNDLDWSHNNKII-AGALDNGSLEL 93
Query: 225 TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284
Y EA AI + F + SS +T+K + + + G G + +W+ +
Sbjct: 94 ----YSTNEANNAINSMARFSNHSSSV--KTVKFNAKQDNV-LASGGNNGEIFIWDMNKC 146
Query: 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 344
+ +T M + A NQ L V A + ++ + K E+I
Sbjct: 147 TESPSNYTPLTPGQSMSSVDEVISLAW----NQSLAHVFASAGSSNFASIWDLKAKKEVI 202
Query: 345 ---LSKRLVGYNEEILDLKFLGEEEQYLAVAT---NIEQVQVYDLSSMSCSY--VLAGHS 396
+ G +++ +++ + +A AT N + ++DL + + + GH
Sbjct: 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ 262
Query: 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 456
+ +L LD C + L+++ +DN+V LW+ ES + F+ + +
Sbjct: 263 KGILSLDWC--HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320
Query: 457 LVSGSSDHTIKVWSFDGLSD 476
S D+ I+V + L++
Sbjct: 321 FACASFDNKIEVQTLQNLTN 340
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLS-------SMSCSYVLAGHSEIVLCLDTCALS 408
+ DL ++GE + + VA++ V++++L S C Y H +IV T ++
Sbjct: 85 VADLTWVGE--RGILVASDSGAVELWELDENETLIVSKFCKY---EHDDIV---STVSVL 136
Query: 409 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV 468
S V+GSKD +++WD + + H V VA S + +S S D+ I +
Sbjct: 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
Query: 469 W 469
W
Sbjct: 197 W 197
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 163 SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLR 218
SGS D ++VWDL + +++ H ++VT +A + S +S D + LWD R
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 551 VITASGDKTIKIWSISDGSCLKTFE----GHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606
++ AS +++W + + L + H V S L+ G Q VS D +K+W
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 607 VRTGECIATYDKHEDKIWALAVGK-KTEMFATGGSDALVNLW 647
+ +++Y H ++ +A K +F + D + LW
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 8/170 (4%)
Query: 113 SGGLLATAGA-DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171
S G A +G+ D + VWD+ ++ H V+ + P D S+ S S+D +
Sbjct: 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD-SVFLSCSEDNRIL 195
Query: 172 VWDLLAKKCVATLDKHFSRV--TSMAITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPT 228
+WD K + + TS+A S + G + V+L D + SC L+
Sbjct: 196 LWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV 255
Query: 229 YEMVEAVCAIPPGSAFDSFLSSYNQQ-TIKKKRRSLEIHFITVGERGIVR 277
+ P S FL+S ++ ++ SL F + R VR
Sbjct: 256 HSQCVTGLVFSPHSV--PFLASLSEDCSLAVLDSSLSELFRSQAHRDFVR 303
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 83 EIRVWDL----STLKCLRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDV-DGGFC 136
++++WD + + S G P + HP+ ++AT G D + +WDV G
Sbjct: 213 QLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMP 272
Query: 137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
K H+ + + FHP ++ LF+ S+D ++ WD
Sbjct: 273 VSLLKAHEAEMWEVHFHP-SNPEHLFTCSEDGSLWHWD 309
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 41/162 (25%)
Query: 551 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR-- 608
++T D I ++ ++T + SS L A R +I++ + G +K+W R
Sbjct: 163 IVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQ 222
Query: 609 ----------TGECIATY--DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXX 656
TG+ + + D+H ++ + ATGG D ++++W
Sbjct: 223 GNEPSQILSLTGDRVPLHCVDRHPNQ---------QHVVATGGQDGMLSIWD-------- 265
Query: 657 XXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLF 698
+R + ++L A + +V F P LF
Sbjct: 266 ----------VRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLF 297
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/322 (19%), Positives = 139/322 (43%), Gaps = 53/322 (16%)
Query: 367 QYLAVATNIEQVQVYDLSSMSCSYVLA----GHSEIVLCLDTCALSSGKILIVTGSKDNS 422
+++A ++ + ++V+ L + ++ L+ H ++ +D + G+I I + S D +
Sbjct: 24 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI-IASASYDKT 82
Query: 423 VRLW--DSESRCCVGVGTGHM-------GAVGAVAFSK-KLQNFLVSGSSDHTIKVWSFD 472
V+LW D + C G + G++ +V F+ L L +D ++++
Sbjct: 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY--- 139
Query: 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL-----------------VCTGSQD 515
DA +P +L++ + + ++ L++ P + L + + +
Sbjct: 140 ----DALEPSDLRSWTLTS----EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE 191
Query: 516 RTACVWRLPD--LVSVVTFRGHKRGIWSVEFSPV----DQVVITASGDKTIKIWSISDG- 568
+ R D L GHK I S+ ++P Q++ T D I+I+ I++
Sbjct: 192 QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 251
Query: 569 SCLKTFEGHTSSVL--RASFLTRGAQIVS-CGADGLVKLWTVRTGECIATYDKHEDKIWA 625
S L + E T+S + ++ + AQ S + +L + E ++ +D H ++W+
Sbjct: 252 SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS 311
Query: 626 LAVGKKTEMFATGGSDALVNLW 647
++ + ++ G D V LW
Sbjct: 312 VSWNLTGTILSSAGDDGKVRLW 333
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 63/322 (19%), Positives = 139/322 (43%), Gaps = 53/322 (16%)
Query: 367 QYLAVATNIEQVQVYDLSSMSCSYVLA----GHSEIVLCLDTCALSSGKILIVTGSKDNS 422
+++A ++ + ++V+ L + ++ L+ H ++ +D + G+I I + S D +
Sbjct: 22 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI-IASASYDKT 80
Query: 423 VRLW--DSESRCCVGVGTGHM-------GAVGAVAFSK-KLQNFLVSGSSDHTIKVWSFD 472
V+LW D + C G + G++ +V F+ L L +D ++++
Sbjct: 81 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY--- 137
Query: 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL-----------------VCTGSQD 515
DA +P +L++ + + ++ L++ P + L + + +
Sbjct: 138 ----DALEPSDLRSWTLTS----EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE 189
Query: 516 RTACVWRLPD--LVSVVTFRGHKRGIWSVEFSPV----DQVVITASGDKTIKIWSISDG- 568
+ R D L GHK I S+ ++P Q++ T D I+I+ I++
Sbjct: 190 QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 249
Query: 569 SCLKTFEGHTSSVL--RASFLTRGAQIVS-CGADGLVKLWTVRTGECIATYDKHEDKIWA 625
S L + E T+S + ++ + AQ S + +L + E ++ +D H ++W+
Sbjct: 250 SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS 309
Query: 626 LAVGKKTEMFATGGSDALVNLW 647
++ + ++ G D V LW
Sbjct: 310 VSWNLTGTILSSAGDDGKVRLW 331
>pdb|3VGZ|A Chain A, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|B Chain B, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|C Chain C, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|D Chain D, Crystal Structure Of E. Coli Ynce
Length = 353
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 33 FIACACGESIN-IVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD--- 88
+I+ ES+ +VD N +K+ I+ T LAL + K L+++ E+ D
Sbjct: 156 YISGIGKESVIWVVDGGNIKLKTAIQNTGKXSTGLALDSEGKRLYTTNADGELITIDTAD 215
Query: 89 ---LSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
LS K L K H I + + + A +VLV D G +
Sbjct: 216 NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA-AEVLVVDTRNGNILAKVAAPES 274
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS 205
+ ++LF+P +++ + + V V D + K V T D + S+A+++DG TL
Sbjct: 275 L--AVLFNPARNEAYV-THRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYV 330
Query: 206 AGRDK 210
+ + K
Sbjct: 331 SVKQK 335
>pdb|3VH0|A Chain A, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|B Chain B, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|C Chain C, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|D Chain D, Crystal Structure Of E. Coli Ynce Complexed With Dna
Length = 353
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 33 FIACACGESIN-IVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD--- 88
+I+ ES+ +VD N +K+ I+ T LAL + K L+++ E+ D
Sbjct: 156 YISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD 215
Query: 89 ---LSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG 145
LS K L K H I + + + A +VLV D G +
Sbjct: 216 NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA-AEVLVVDTRNGNILAKVAAPES 274
Query: 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS 205
+ ++LF+P +++ + + V V D + K V T D + S+A+++DG TL
Sbjct: 275 L--AVLFNPARNEAYV-THRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYV 330
Query: 206 AGRDK 210
+ + K
Sbjct: 331 SVKQK 335
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 63/322 (19%), Positives = 137/322 (42%), Gaps = 53/322 (16%)
Query: 367 QYLAVATNIEQVQVYDLSSMSCSYVLA----GHSEIVLCLDTCALSSGKILIVTGSKDNS 422
+++A ++ + ++V+ L + ++ L+ H ++ +D + G+I I + S D +
Sbjct: 24 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI-IASASYDKT 82
Query: 423 VRLW--DSESRCCVGVGTGHM-------GAVGAVAFSK-KLQNFLVSGSSDHTIKVWSFD 472
V+LW D + C G + G++ +V F+ L L +D ++++
Sbjct: 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY--- 139
Query: 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL-----------------VCTGSQD 515
DA +P +L++ + + + L++ P + L + + +
Sbjct: 140 ----DALEPSDLRSWTLTS----EXKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE 191
Query: 516 RTACVWRLPD--LVSVVTFRGHKRGIWSVEFSPV----DQVVITASGDKTIKIWSISDG- 568
+ R D L GHK I S+ ++P Q++ T D I+I+ I++
Sbjct: 192 QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 251
Query: 569 SCLKTFEGHTSSVL--RASFLTRGAQIVS-CGADGLVKLWTVRTGECIATYDKHEDKIWA 625
S L + E T+S ++ + AQ S + +L + E ++ +D H ++W+
Sbjct: 252 SPLASEESLTNSNXFDNSADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS 311
Query: 626 LAVGKKTEMFATGGSDALVNLW 647
++ + ++ G D V LW
Sbjct: 312 VSWNLTGTILSSAGDDGKVRLW 333
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHPSGGLLATA 120
+ ++ SP K L+++G I W+L T K ++++ K ++ + +AC + LAT+
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHPSGGLLATA 120
+ ++ SP K L+++G I W+L T K ++++ K ++ + +AC + LAT+
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHPSGGLLATA 120
+ ++ SP K L+++G I W+L T K ++++ K ++ + +AC + LAT+
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 365 EEQYLAVATNIEQVQVYDLSSMSCS-YVLAGHSEIVLCLDTCALSSGKIL---IVTGSKD 420
+++YLA + +++L + Y + GH EI+ +D IVTGS+D
Sbjct: 79 QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD 138
Query: 421 NSVRLWDSESR 431
+V++WD +
Sbjct: 139 GTVKVWDPRQK 149
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 59/241 (24%)
Query: 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501
G GA + Q +L +G + +W+ + E P+ V H + IN++
Sbjct: 71 GTFGATSLQ---QRYLATGDFGGNLHIWNLEA----PEMPV-----YSVKGHKEIINAID 118
Query: 502 V---------APNDSLVCTGSQDRTACVW--RLPD--LVSVVTFRG-HKRGIWSVEFSPV 547
AP + TGS+D T VW R D + ++ +G +KR W+V F
Sbjct: 119 GIGGLGIGEGAPE---IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175
Query: 548 ----DQVVITASGDKTIKIW-----------SISDGSCLKTFEGHTSSVLRASFLTRGAQ 592
++VV + IK++ +I +G C F+ S+ +
Sbjct: 176 YNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISM---------NK 226
Query: 593 IVSCGADGLVKLWTVRT-----GECIATYDKHEDKIWALA-VGKKTEMFATGGSDALVNL 646
+V+ +G ++ +RT G + H+ +W + + + E+F T G ++L
Sbjct: 227 LVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHL 286
Query: 647 W 647
W
Sbjct: 287 W 287
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHPSGGLLATA 120
+ ++ SP K L+++G I W+L T K ++++ K ++ + +AC + LAT+
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
>pdb|3A1Y|G Chain G, The Structure Of Protein Complex
Length = 284
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 704 VCRKREAELQIEKALHALGKEEIRQLLEYV 733
V R EL I+KA LGK E+ +L+EY+
Sbjct: 54 VSRNTLIELAIKKAAKELGKPELEKLVEYI 83
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425
+ LA+AT +++Q ++C ++A S+ C + + SK++ +R+
Sbjct: 293 QMILAMATTDDELQ----QRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRV 348
Query: 426 WDSESRCCVGVGTGHMGAV------GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 475
C +G G A+ A+ ++ + FL+ D I+ W+ DGL+
Sbjct: 349 RALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA 404
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,911,489
Number of Sequences: 62578
Number of extensions: 1005962
Number of successful extensions: 4835
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2391
Number of HSP's gapped (non-prelim): 870
length of query: 882
length of database: 14,973,337
effective HSP length: 107
effective length of query: 775
effective length of database: 8,277,491
effective search space: 6415055525
effective search space used: 6415055525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)