Query 002782
Match_columns 882
No_of_seqs 1143 out of 4067
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 07:01:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0319 WD40-repeat-containing 100.0 5E-122 1E-126 942.2 68.4 765 1-806 1-774 (775)
2 KOG0306 WD40-repeat-containing 100.0 4.7E-79 1E-83 625.6 55.3 766 9-808 7-856 (888)
3 KOG0291 WD40-repeat-containing 100.0 6.9E-72 1.5E-76 573.2 68.7 738 7-827 2-870 (893)
4 KOG0319 WD40-repeat-containing 100.0 1.7E-58 3.6E-63 474.8 43.0 527 24-608 67-619 (775)
5 KOG0318 WD40 repeat stress pro 100.0 1.5E-54 3.3E-59 428.3 64.3 585 1-650 1-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 2.8E-50 6E-55 414.3 66.5 545 6-651 42-710 (893)
7 KOG0271 Notchless-like WD40 re 100.0 2.1E-54 4.6E-59 410.3 31.0 336 93-648 106-479 (480)
8 KOG0271 Notchless-like WD40 re 100.0 5.8E-54 1.3E-58 407.4 30.9 368 53-606 108-479 (480)
9 KOG0306 WD40-repeat-containing 100.0 1.9E-50 4.1E-55 415.3 49.5 556 23-609 69-665 (888)
10 KOG0318 WD40 repeat stress pro 100.0 1E-47 2.2E-52 380.0 58.4 529 17-608 52-602 (603)
11 KOG1408 WD40 repeat protein [F 100.0 1.1E-46 2.4E-51 384.2 47.7 562 21-656 39-719 (1080)
12 KOG1539 WD repeat protein [Gen 100.0 2.2E-43 4.7E-48 368.1 61.1 588 9-648 23-646 (910)
13 KOG1408 WD40 repeat protein [F 100.0 2.1E-43 4.5E-48 360.4 39.5 537 24-609 83-714 (1080)
14 KOG0272 U4/U6 small nuclear ri 100.0 4.4E-45 9.5E-50 352.2 25.2 287 348-648 170-458 (459)
15 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-43 7.7E-48 339.1 23.6 284 58-522 173-458 (459)
16 KOG0310 Conserved WD40 repeat- 100.0 1.1E-40 2.5E-45 328.4 32.2 427 352-800 25-481 (487)
17 KOG1539 WD repeat protein [Gen 100.0 1.1E-37 2.3E-42 325.7 51.5 534 25-608 80-648 (910)
18 KOG1063 RNA polymerase II elon 100.0 3E-38 6.5E-43 323.2 45.4 577 24-651 19-700 (764)
19 KOG2106 Uncharacterized conser 100.0 1.3E-37 2.7E-42 306.7 45.0 492 9-649 89-625 (626)
20 KOG0286 G-protein beta subunit 100.0 5.9E-39 1.3E-43 295.2 33.3 291 342-648 44-343 (343)
21 KOG0286 G-protein beta subunit 100.0 1.7E-38 3.8E-43 292.2 33.5 294 137-606 48-343 (343)
22 KOG0279 G protein beta subunit 100.0 8.9E-39 1.9E-43 292.4 31.3 292 342-650 4-313 (315)
23 KOG0276 Vesicle coat complex C 100.0 6.3E-37 1.4E-41 309.3 46.2 469 24-654 18-494 (794)
24 KOG0296 Angio-associated migra 100.0 3.1E-37 6.7E-42 292.7 34.6 332 52-566 56-398 (399)
25 KOG0315 G-protein beta subunit 100.0 5.8E-37 1.3E-41 275.4 32.3 294 157-629 9-309 (311)
26 KOG0273 Beta-transducin family 100.0 2.4E-37 5.3E-42 302.7 32.3 243 391-649 271-522 (524)
27 KOG0315 G-protein beta subunit 100.0 6.3E-37 1.4E-41 275.2 31.8 295 115-587 11-309 (311)
28 KOG0273 Beta-transducin family 100.0 1.6E-36 3.5E-41 297.0 33.5 323 101-608 177-523 (524)
29 KOG0296 Angio-associated migra 100.0 2.6E-36 5.6E-41 286.5 32.7 340 93-608 55-398 (399)
30 KOG0295 WD40 repeat-containing 100.0 1.2E-37 2.6E-42 295.2 22.7 291 344-649 99-405 (406)
31 KOG0292 Vesicle coat complex C 100.0 6.2E-34 1.3E-38 298.4 52.1 526 55-654 4-598 (1202)
32 KOG0279 G protein beta subunit 100.0 6.9E-36 1.5E-40 273.5 32.6 286 24-334 20-313 (315)
33 KOG0263 Transcription initiati 100.0 1.4E-36 3E-41 317.6 29.0 247 378-638 433-703 (707)
34 KOG0295 WD40 repeat-containing 100.0 1.1E-36 2.4E-41 288.8 24.9 305 51-471 99-405 (406)
35 KOG0276 Vesicle coat complex C 100.0 1.5E-34 3.2E-39 292.2 39.8 407 96-653 7-455 (794)
36 KOG0281 Beta-TrCP (transducin 100.0 1.6E-37 3.4E-42 291.7 16.9 277 353-655 197-482 (499)
37 KOG0284 Polyadenylation factor 100.0 5E-37 1.1E-41 295.1 17.9 285 353-652 96-382 (464)
38 KOG0263 Transcription initiati 100.0 1.7E-36 3.7E-41 316.9 22.1 274 353-652 378-651 (707)
39 KOG0265 U5 snRNP-specific prot 100.0 1.7E-34 3.6E-39 267.2 28.4 288 344-646 38-334 (338)
40 KOG0285 Pleiotropic regulator 100.0 8.9E-35 1.9E-39 274.6 26.8 291 52-474 143-441 (460)
41 KOG1063 RNA polymerase II elon 100.0 1.2E-32 2.7E-37 282.2 43.3 539 24-650 59-763 (764)
42 KOG2106 Uncharacterized conser 100.0 6.1E-32 1.3E-36 266.8 46.1 478 24-653 70-584 (626)
43 KOG0293 WD40 repeat-containing 100.0 8.6E-35 1.9E-39 279.7 23.8 294 52-473 216-514 (519)
44 KOG0645 WD40 repeat protein [G 100.0 5.7E-33 1.2E-37 253.3 34.2 295 52-524 6-311 (312)
45 KOG2048 WD40 repeat protein [G 100.0 4.3E-31 9.4E-36 270.8 51.9 536 24-654 30-605 (691)
46 KOG0284 Polyadenylation factor 100.0 2.1E-35 4.6E-40 283.9 17.0 284 60-523 96-379 (464)
47 KOG0285 Pleiotropic regulator 100.0 5E-34 1.1E-38 269.5 24.8 292 342-650 140-439 (460)
48 KOG0282 mRNA splicing factor [ 100.0 4.1E-35 8.8E-40 288.6 17.9 294 51-470 205-503 (503)
49 KOG0265 U5 snRNP-specific prot 100.0 4.1E-33 9E-38 258.0 28.2 288 54-469 41-335 (338)
50 KOG0645 WD40 repeat protein [G 100.0 5.9E-32 1.3E-36 246.7 32.6 290 343-650 4-311 (312)
51 KOG0281 Beta-TrCP (transducin 100.0 3.1E-34 6.6E-39 269.6 17.3 287 101-529 196-482 (499)
52 KOG0292 Vesicle coat complex C 100.0 5.5E-32 1.2E-36 283.9 35.7 344 97-636 4-381 (1202)
53 KOG2048 WD40 repeat protein [G 100.0 1.6E-29 3.4E-34 259.4 52.1 495 59-650 24-548 (691)
54 KOG0266 WD40 repeat-containing 100.0 7.9E-32 1.7E-36 293.6 34.4 291 54-472 152-454 (456)
55 cd00200 WD40 WD40 domain, foun 100.0 2.3E-31 4.9E-36 278.1 35.6 286 348-648 4-289 (289)
56 KOG0316 Conserved WD40 repeat- 100.0 1.1E-31 2.4E-36 239.4 27.3 284 347-648 11-297 (307)
57 KOG0266 WD40 repeat-containing 100.0 7.6E-32 1.6E-36 293.7 31.6 283 353-650 159-454 (456)
58 KOG0316 Conserved WD40 repeat- 100.0 1.3E-31 2.7E-36 239.1 26.3 286 52-470 9-297 (307)
59 KOG0275 Conserved WD40 repeat- 100.0 3.6E-33 7.7E-38 260.0 16.4 283 59-470 212-507 (508)
60 cd00200 WD40 WD40 domain, foun 100.0 1E-30 2.2E-35 273.2 37.2 288 53-470 2-289 (289)
61 KOG0278 Serine/threonine kinas 100.0 4E-32 8.6E-37 244.3 19.4 292 347-655 8-302 (334)
62 KOG0282 mRNA splicing factor [ 100.0 6E-32 1.3E-36 266.3 20.4 291 344-648 205-503 (503)
63 PLN00181 protein SPA1-RELATED; 100.0 6.9E-30 1.5E-34 300.8 39.9 241 354-607 533-792 (793)
64 KOG0313 Microtubule binding pr 100.0 8.5E-31 1.8E-35 250.2 25.9 291 352-650 104-418 (423)
65 KOG0293 WD40 repeat-containing 100.0 4.9E-31 1.1E-35 254.0 23.2 290 346-651 217-514 (519)
66 PLN00181 protein SPA1-RELATED; 100.0 1.3E-29 2.8E-34 298.6 39.1 286 348-649 478-792 (793)
67 KOG0278 Serine/threonine kinas 100.0 1.2E-30 2.6E-35 234.8 18.5 287 54-474 8-299 (334)
68 KOG0275 Conserved WD40 repeat- 100.0 1.5E-30 3.4E-35 242.4 16.1 285 101-564 212-507 (508)
69 KOG0643 Translation initiation 100.0 3.4E-29 7.4E-34 228.0 23.3 295 348-651 5-318 (327)
70 KOG0274 Cdc4 and related F-box 100.0 7.1E-29 1.5E-33 267.8 28.7 279 353-657 208-489 (537)
71 KOG0643 Translation initiation 100.0 8.7E-29 1.9E-33 225.4 24.4 290 55-473 5-318 (327)
72 KOG1407 WD40 repeat protein [F 100.0 2.2E-28 4.8E-33 222.1 26.7 278 347-641 14-293 (313)
73 KOG0277 Peroxisomal targeting 100.0 3E-29 6.5E-34 226.7 20.8 281 357-649 12-308 (311)
74 KOG1407 WD40 repeat protein [F 100.0 3.1E-28 6.6E-33 221.2 26.6 234 349-599 60-293 (313)
75 KOG0313 Microtubule binding pr 100.0 3.5E-28 7.5E-33 232.5 27.2 282 59-429 104-418 (423)
76 KOG1446 Histone H3 (Lys4) meth 100.0 2.3E-27 5E-32 222.8 31.9 285 347-650 8-303 (311)
77 KOG0274 Cdc4 and related F-box 100.0 9.6E-28 2.1E-32 259.1 33.1 276 59-475 207-485 (537)
78 KOG0310 Conserved WD40 repeat- 100.0 2.9E-28 6.4E-33 241.0 25.8 283 303-607 25-308 (487)
79 KOG0305 Anaphase promoting com 100.0 3.1E-28 6.8E-33 251.7 27.0 282 17-431 176-463 (484)
80 KOG0640 mRNA cleavage stimulat 100.0 1.1E-28 2.5E-33 228.9 20.3 201 24-226 117-343 (430)
81 KOG0305 Anaphase promoting com 100.0 1.3E-27 2.9E-32 247.0 29.7 271 365-652 187-463 (484)
82 KOG0283 WD40 repeat-containing 100.0 3E-28 6.4E-33 257.9 25.2 260 52-431 258-578 (712)
83 PTZ00421 coronin; Provisional 100.0 1.6E-26 3.5E-31 249.9 39.0 218 1-220 1-247 (493)
84 KOG0277 Peroxisomal targeting 100.0 2.1E-28 4.5E-33 221.3 20.2 268 323-607 35-308 (311)
85 KOG0288 WD40 repeat protein Ti 100.0 6.4E-29 1.4E-33 240.0 17.8 282 348-648 170-459 (459)
86 KOG0299 U3 snoRNP-associated p 100.0 1.4E-27 3.1E-32 234.2 25.7 288 53-472 135-456 (479)
87 KOG1446 Histone H3 (Lys4) meth 100.0 3.1E-26 6.8E-31 215.2 33.3 293 53-472 7-303 (311)
88 KOG0973 Histone transcription 100.0 2.6E-27 5.7E-32 257.2 29.9 293 59-525 12-356 (942)
89 KOG0301 Phospholipase A2-activ 100.0 2.2E-27 4.8E-32 244.1 27.1 282 343-650 4-288 (745)
90 PF08625 Utp13: Utp13 specific 100.0 4.4E-29 9.6E-34 216.5 12.0 136 669-804 1-141 (141)
91 KOG0288 WD40 repeat protein Ti 100.0 1.4E-28 3E-33 237.7 15.6 289 93-563 166-458 (459)
92 KOG0268 Sof1-like rRNA process 100.0 1.4E-28 3E-33 233.5 14.9 290 137-613 59-350 (433)
93 KOG0772 Uncharacterized conser 100.0 3.9E-27 8.5E-32 233.5 25.4 214 437-654 264-491 (641)
94 KOG0289 mRNA splicing factor [ 100.0 4.2E-27 9.1E-32 228.7 25.1 282 355-649 221-505 (506)
95 KOG0268 Sof1-like rRNA process 100.0 7.3E-28 1.6E-32 228.7 19.1 291 343-654 56-349 (433)
96 KOG1445 Tumor-specific antigen 100.0 6.9E-26 1.5E-30 229.6 33.2 576 30-653 42-847 (1012)
97 KOG0294 WD40 repeat-containing 100.0 1.5E-26 3.3E-31 216.0 26.1 246 53-431 36-283 (362)
98 KOG0640 mRNA cleavage stimulat 100.0 2.4E-27 5.2E-32 220.2 20.6 294 345-650 104-426 (430)
99 KOG0283 WD40 repeat-containing 100.0 3.2E-27 6.9E-32 250.1 24.0 209 387-611 360-579 (712)
100 KOG0300 WD40 repeat-containing 100.0 5.6E-27 1.2E-31 218.2 22.6 294 52-474 140-478 (481)
101 KOG0301 Phospholipase A2-activ 100.0 1.6E-26 3.6E-31 237.7 27.3 282 51-474 5-290 (745)
102 KOG0772 Uncharacterized conser 100.0 6.6E-27 1.4E-31 232.0 22.9 303 138-606 161-485 (641)
103 KOG0300 WD40 repeat-containing 100.0 9E-27 1.9E-31 216.9 21.5 332 136-610 140-478 (481)
104 KOG1963 WD40 repeat protein [G 100.0 7.7E-25 1.7E-29 232.7 38.7 465 24-572 21-589 (792)
105 KOG0641 WD40 repeat protein [G 100.0 7.7E-25 1.7E-29 194.3 32.1 296 59-524 31-349 (350)
106 KOG0294 WD40 repeat-containing 100.0 1E-25 2.2E-30 210.5 27.7 289 318-628 3-305 (362)
107 KOG0308 Conserved WD40 repeat- 100.0 4.3E-27 9.4E-32 240.0 19.7 362 107-617 29-402 (735)
108 KOG0289 mRNA splicing factor [ 100.0 6.1E-26 1.3E-30 220.7 26.5 205 24-230 224-431 (506)
109 KOG0299 U3 snoRNP-associated p 99.9 4.2E-26 9.1E-31 223.9 25.4 286 95-555 135-444 (479)
110 KOG0647 mRNA export protein (c 99.9 9.2E-26 2E-30 209.6 25.9 276 59-463 26-315 (347)
111 KOG0308 Conserved WD40 repeat- 99.9 5.2E-27 1.1E-31 239.4 19.4 287 361-650 32-327 (735)
112 KOG0973 Histone transcription 99.9 6.4E-26 1.4E-30 246.5 28.1 311 143-611 12-358 (942)
113 PTZ00421 coronin; Provisional 99.9 1.9E-25 4.1E-30 241.6 31.5 215 436-653 70-293 (493)
114 PTZ00420 coronin; Provisional 99.9 2.9E-25 6.4E-30 240.5 31.5 234 416-652 49-295 (568)
115 KOG0264 Nucleosome remodeling 99.9 4.1E-26 9E-31 224.4 20.8 254 393-651 121-405 (422)
116 PTZ00420 coronin; Provisional 99.9 9.9E-25 2.1E-29 236.5 33.1 248 372-633 50-319 (568)
117 KOG0647 mRNA export protein (c 99.9 4.9E-25 1.1E-29 204.8 25.6 270 100-513 25-312 (347)
118 KOG1445 Tumor-specific antigen 99.9 3.6E-24 7.9E-29 217.2 33.7 149 494-642 627-786 (1012)
119 KOG0646 WD40 repeat protein [G 99.9 4.9E-25 1.1E-29 217.0 26.4 310 82-607 18-349 (476)
120 KOG1332 Vesicle coat complex C 99.9 1.1E-25 2.5E-30 202.5 18.7 249 392-651 7-287 (299)
121 KOG0641 WD40 repeat protein [G 99.9 2.2E-23 4.7E-28 185.1 32.1 284 352-650 31-349 (350)
122 KOG1538 Uncharacterized conser 99.9 9.2E-23 2E-27 208.3 39.4 477 24-562 17-520 (1081)
123 KOG0264 Nucleosome remodeling 99.9 6.9E-25 1.5E-29 215.9 22.7 252 347-608 118-404 (422)
124 KOG0646 WD40 repeat protein [G 99.9 1.2E-24 2.5E-29 214.4 23.2 253 375-633 60-332 (476)
125 KOG2096 WD40 repeat protein [G 99.9 1.6E-23 3.4E-28 195.9 26.2 290 347-653 80-405 (420)
126 KOG1036 Mitotic spindle checkp 99.9 2E-23 4.4E-28 195.1 26.2 267 353-640 13-294 (323)
127 KOG2096 WD40 repeat protein [G 99.9 1.9E-23 4E-28 195.3 25.4 305 182-564 80-400 (420)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.9E-22 6.2E-27 210.9 37.6 290 72-546 1-300 (300)
129 KOG0267 Microtubule severing p 99.9 2.4E-25 5.2E-30 230.0 11.8 255 369-643 7-261 (825)
130 KOG4283 Transcription-coupled 99.9 4.2E-23 9E-28 190.9 24.9 254 351-607 99-364 (397)
131 KOG0639 Transducin-like enhanc 99.9 4.9E-24 1.1E-28 210.7 19.7 279 353-649 418-703 (705)
132 KOG0321 WD40 repeat-containing 99.9 1.6E-23 3.6E-28 213.6 23.0 291 363-656 61-397 (720)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.4E-22 7.4E-27 210.3 34.2 270 367-653 2-282 (300)
134 KOG0639 Transducin-like enhanc 99.9 1.2E-23 2.6E-28 208.0 21.0 280 58-471 417-703 (705)
135 KOG1332 Vesicle coat complex C 99.9 8.9E-24 1.9E-28 190.4 17.9 144 56-199 7-160 (299)
136 KOG1036 Mitotic spindle checkp 99.9 1.9E-22 4E-27 188.8 27.1 270 303-598 12-294 (323)
137 KOG0650 WD40 repeat nucleolar 99.9 1.2E-22 2.6E-27 205.6 26.2 313 54-563 394-732 (733)
138 KOG1274 WD40 repeat protein [G 99.9 2.2E-22 4.7E-27 214.4 27.8 276 351-647 11-297 (933)
139 KOG4283 Transcription-coupled 99.9 3.6E-22 7.8E-27 184.7 25.7 292 141-565 40-364 (397)
140 KOG2445 Nuclear pore complex c 99.9 3.6E-22 7.8E-27 186.3 25.2 253 393-650 10-318 (361)
141 KOG0269 WD40 repeat-containing 99.9 2.6E-23 5.7E-28 216.9 19.6 286 312-610 47-342 (839)
142 KOG1273 WD40 repeat protein [G 99.9 7.7E-22 1.7E-26 184.4 27.1 292 63-566 26-322 (405)
143 KOG1274 WD40 repeat protein [G 99.9 2.2E-22 4.8E-27 214.3 26.1 243 393-651 10-263 (933)
144 KOG0269 WD40 repeat-containing 99.9 2.7E-23 5.9E-28 216.7 18.9 232 406-648 95-338 (839)
145 KOG1963 WD40 repeat protein [G 99.9 3.7E-20 8.1E-25 197.4 42.8 473 106-652 20-540 (792)
146 KOG0321 WD40 repeat-containing 99.9 3.1E-22 6.8E-27 204.4 24.9 435 66-631 55-553 (720)
147 COG2319 FOG: WD40 repeat [Gene 99.9 1.8E-19 3.9E-24 201.0 49.3 374 96-651 59-443 (466)
148 KOG1273 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 183.3 24.2 287 356-654 26-326 (405)
149 KOG1538 Uncharacterized conser 99.9 5.2E-21 1.1E-25 195.6 31.1 279 62-523 14-292 (1081)
150 KOG0267 Microtubule severing p 99.9 4.7E-24 1E-28 220.6 8.4 222 414-652 7-228 (825)
151 KOG2445 Nuclear pore complex c 99.9 4.8E-21 1E-25 178.8 26.6 272 99-524 10-318 (361)
152 KOG2055 WD40 repeat protein [G 99.9 2.7E-21 5.8E-26 190.2 26.2 291 143-566 212-512 (514)
153 COG2319 FOG: WD40 repeat [Gene 99.9 9.8E-19 2.1E-23 195.0 51.1 373 55-609 60-443 (466)
154 KOG2055 WD40 repeat protein [G 99.9 2.2E-21 4.7E-26 190.9 25.5 284 352-650 212-512 (514)
155 KOG4328 WD40 protein [Function 99.9 2E-21 4.2E-26 191.1 23.8 291 347-650 180-495 (498)
156 KOG0650 WD40 repeat nucleolar 99.9 1.8E-21 3.9E-26 197.2 24.1 216 420-647 496-732 (733)
157 KOG4328 WD40 protein [Function 99.9 3.4E-21 7.5E-26 189.4 24.5 306 129-608 171-495 (498)
158 KOG1034 Transcriptional repres 99.9 1.7E-20 3.7E-25 176.7 21.9 293 348-650 33-383 (385)
159 KOG1034 Transcriptional repres 99.9 2.7E-20 5.9E-25 175.4 22.9 315 55-471 33-382 (385)
160 KOG1912 WD40 repeat protein [G 99.9 1.1E-18 2.5E-23 182.1 36.0 580 23-651 19-742 (1062)
161 KOG0302 Ribosome Assembly prot 99.9 1.7E-20 3.6E-25 179.9 20.3 247 348-605 146-435 (440)
162 KOG2919 Guanine nucleotide-bin 99.9 6.4E-20 1.4E-24 172.4 23.5 308 305-652 50-369 (406)
163 KOG4378 Nuclear protein COP1 [ 99.9 6.5E-20 1.4E-24 181.6 23.6 211 367-590 92-305 (673)
164 KOG0302 Ribosome Assembly prot 99.9 7.6E-21 1.6E-25 182.3 16.5 221 437-658 147-386 (440)
165 KOG0270 WD40 repeat-containing 99.9 9.7E-20 2.1E-24 178.8 24.2 239 364-614 190-455 (463)
166 KOG1009 Chromatin assembly com 99.9 2.8E-19 6.1E-24 173.6 27.1 161 59-221 12-198 (434)
167 KOG4378 Nuclear protein COP1 [ 99.9 5.6E-20 1.2E-24 182.1 22.1 288 121-548 9-305 (673)
168 KOG0270 WD40 repeat-containing 99.9 9E-20 2E-24 179.0 23.2 283 63-474 128-451 (463)
169 KOG0322 G-protein beta subunit 99.8 7.5E-20 1.6E-24 167.1 16.9 306 136-565 6-322 (323)
170 KOG1009 Chromatin assembly com 99.8 4.8E-18 1E-22 165.1 26.1 160 15-179 12-198 (434)
171 KOG0644 Uncharacterized conser 99.8 2.2E-20 4.7E-25 196.2 10.5 283 53-474 183-470 (1113)
172 KOG0307 Vesicle coat complex C 99.8 9.1E-20 2E-24 199.8 15.1 246 398-653 66-330 (1049)
173 KOG2919 Guanine nucleotide-bin 99.8 6.5E-18 1.4E-22 159.0 25.1 238 364-613 121-375 (406)
174 KOG1310 WD40 repeat protein [G 99.8 2.7E-18 5.9E-23 172.4 19.4 125 95-219 43-179 (758)
175 KOG0307 Vesicle coat complex C 99.8 8.2E-18 1.8E-22 184.7 24.8 245 355-611 66-330 (1049)
176 KOG1524 WD40 repeat-containing 99.8 1.2E-15 2.7E-20 153.1 37.9 596 24-735 19-642 (737)
177 KOG4227 WD40 repeat protein [G 99.8 1.1E-17 2.3E-22 161.1 21.0 300 97-523 51-386 (609)
178 KOG2041 WD40 repeat protein [G 99.8 1.7E-16 3.7E-21 164.3 30.9 551 102-739 14-736 (1189)
179 KOG1587 Cytoplasmic dynein int 99.8 5.8E-17 1.3E-21 173.9 28.0 280 123-525 221-517 (555)
180 KOG0649 WD40 repeat protein [G 99.8 2E-16 4.4E-21 143.0 26.9 226 25-283 16-275 (325)
181 KOG0642 Cell-cycle nuclear pro 99.8 1.7E-18 3.8E-23 175.2 15.1 259 390-653 288-564 (577)
182 KOG1587 Cytoplasmic dynein int 99.8 4.2E-17 9.1E-22 175.0 25.7 277 376-654 222-520 (555)
183 KOG0322 G-protein beta subunit 99.8 7.5E-18 1.6E-22 154.2 16.9 290 348-649 9-322 (323)
184 KOG1188 WD40 repeat protein [G 99.8 8.4E-18 1.8E-22 159.8 17.7 195 32-227 41-251 (376)
185 KOG4497 Uncharacterized conser 99.8 1.6E-17 3.5E-22 156.6 19.0 405 24-600 13-424 (447)
186 KOG0644 Uncharacterized conser 99.8 6.1E-19 1.3E-23 185.5 10.0 291 343-654 180-472 (1113)
187 KOG0649 WD40 repeat protein [G 99.8 1.2E-16 2.6E-21 144.4 23.1 235 406-651 18-275 (325)
188 KOG1188 WD40 repeat protein [G 99.8 2.1E-17 4.6E-22 157.1 19.1 272 367-649 41-345 (376)
189 KOG0303 Actin-binding protein 99.8 3.8E-17 8.2E-22 158.0 20.9 213 436-653 76-297 (472)
190 KOG0642 Cell-cycle nuclear pro 99.8 4.7E-18 1E-22 172.1 15.1 267 53-441 287-573 (577)
191 KOG0303 Actin-binding protein 99.8 6.3E-17 1.4E-21 156.5 21.6 206 54-284 75-296 (472)
192 KOG1007 WD repeat protein TSSC 99.8 1.5E-16 3.2E-21 147.5 22.1 268 325-609 39-362 (370)
193 KOG4227 WD40 repeat protein [G 99.8 7.7E-17 1.7E-21 155.2 20.5 248 352-607 104-386 (609)
194 KOG1240 Protein kinase contain 99.8 2.3E-16 5E-21 173.5 26.2 180 45-225 1034-1232(1431)
195 KOG0974 WD-repeat protein WDR6 99.8 8E-15 1.7E-19 159.8 37.7 186 30-220 98-290 (967)
196 KOG1007 WD repeat protein TSSC 99.7 5.1E-16 1.1E-20 144.0 23.2 281 122-525 38-362 (370)
197 KOG4497 Uncharacterized conser 99.7 2.2E-16 4.8E-21 149.0 20.5 140 66-209 14-154 (447)
198 KOG1524 WD40 repeat-containing 99.7 1.2E-15 2.6E-20 153.2 26.8 437 32-567 77-524 (737)
199 KOG1517 Guanine nucleotide bin 99.7 2.2E-16 4.8E-21 170.8 22.9 192 409-610 1176-1383(1387)
200 PRK11028 6-phosphogluconolacto 99.7 3.6E-15 7.8E-20 158.0 31.0 269 370-650 6-304 (330)
201 KOG1517 Guanine nucleotide bin 99.7 9E-16 2E-20 166.1 26.1 301 103-526 1065-1383(1387)
202 KOG1334 WD40 repeat protein [G 99.7 5E-17 1.1E-21 161.5 14.1 314 53-432 135-469 (559)
203 PF02239 Cytochrom_D1: Cytochr 99.7 5E-14 1.1E-18 148.0 37.3 327 32-474 6-349 (369)
204 KOG1334 WD40 repeat protein [G 99.7 5.8E-17 1.3E-21 161.1 12.9 301 342-651 131-467 (559)
205 KOG1912 WD40 repeat protein [G 99.7 1.2E-14 2.6E-19 152.4 28.0 471 61-652 16-553 (1062)
206 KOG1310 WD40 repeat protein [G 99.7 1.6E-16 3.6E-21 159.8 13.7 166 52-218 42-231 (758)
207 KOG0290 Conserved WD40 repeat- 99.7 2.5E-14 5.5E-19 133.1 25.5 291 93-514 36-356 (364)
208 KOG2315 Predicted translation 99.7 1.2E-13 2.7E-18 140.6 32.0 378 33-589 4-411 (566)
209 PF02239 Cytochrom_D1: Cytochr 99.7 1.6E-13 3.5E-18 144.2 34.2 324 160-617 8-356 (369)
210 PRK11028 6-phosphogluconolacto 99.7 9.4E-14 2E-18 147.2 32.9 244 356-608 37-304 (330)
211 KOG2110 Uncharacterized conser 99.7 2.1E-14 4.5E-19 138.6 24.7 229 406-653 13-251 (391)
212 KOG1240 Protein kinase contain 99.7 1.6E-14 3.4E-19 159.3 25.7 357 129-606 1034-1431(1431)
213 KOG2139 WD40 repeat protein [G 99.7 4.8E-14 1E-18 135.3 25.3 302 24-383 103-430 (445)
214 KOG0974 WD-repeat protein WDR6 99.7 3.6E-13 7.8E-18 147.1 35.2 225 32-284 18-290 (967)
215 PRK01742 tolB translocation pr 99.7 9.7E-15 2.1E-19 159.3 23.6 235 375-631 183-426 (429)
216 KOG0771 Prolactin regulatory e 99.7 2.7E-15 5.9E-20 147.5 16.5 195 445-651 148-355 (398)
217 KOG2394 WD40 protein DMR-N9 [G 99.7 6.8E-15 1.5E-19 148.2 19.3 221 408-653 183-455 (636)
218 PF04762 IKI3: IKI3 family; I 99.6 4.9E-09 1.1E-13 122.6 70.2 446 23-567 25-565 (928)
219 KOG1272 WD40-repeat-containing 99.6 4.8E-16 1E-20 153.7 10.4 199 24-228 134-333 (545)
220 KOG0290 Conserved WD40 repeat- 99.6 7.6E-14 1.6E-18 130.0 23.4 269 365-646 58-361 (364)
221 COG5354 Uncharacterized protei 99.6 3.7E-13 8E-18 135.4 29.8 365 9-600 21-421 (561)
222 KOG1523 Actin-related protein 99.6 2.2E-14 4.9E-19 135.6 19.9 203 14-221 8-239 (361)
223 KOG2110 Uncharacterized conser 99.6 5.9E-13 1.3E-17 128.7 29.7 197 25-227 11-213 (391)
224 KOG0771 Prolactin regulatory e 99.6 4E-15 8.6E-20 146.4 14.9 194 23-219 148-355 (398)
225 KOG2111 Uncharacterized conser 99.6 7.6E-13 1.7E-17 125.4 29.0 278 357-650 9-322 (346)
226 COG4946 Uncharacterized protei 99.6 1.2E-10 2.7E-15 116.1 44.6 177 361-556 327-508 (668)
227 PRK01742 tolB translocation pr 99.6 3E-14 6.6E-19 155.5 20.5 211 420-650 183-401 (429)
228 KOG2394 WD40 protein DMR-N9 [G 99.6 1.3E-14 2.8E-19 146.3 15.3 193 28-222 182-456 (636)
229 KOG1523 Actin-related protein 99.6 1E-13 2.3E-18 131.1 20.0 235 395-641 9-269 (361)
230 KOG4547 WD40 repeat-containing 99.6 9.5E-13 2E-17 135.5 28.6 415 363-794 2-523 (541)
231 KOG3881 Uncharacterized conser 99.6 1.3E-13 2.7E-18 134.2 20.2 270 354-631 56-342 (412)
232 COG5354 Uncharacterized protei 99.6 4.7E-12 1E-16 127.5 31.6 376 40-642 11-421 (561)
233 KOG1272 WD40-repeat-containing 99.6 3.5E-15 7.5E-20 147.7 8.5 232 399-651 132-363 (545)
234 PRK03629 tolB translocation pr 99.6 1.5E-12 3.3E-17 141.7 27.8 236 376-630 179-427 (429)
235 KOG2139 WD40 repeat protein [G 99.6 4.7E-12 1E-16 121.9 26.8 291 102-565 98-430 (445)
236 KOG1354 Serine/threonine prote 99.5 1.3E-12 2.8E-17 124.8 22.6 193 442-647 214-431 (433)
237 KOG2321 WD40 repeat protein [G 99.5 1.4E-12 3E-17 132.9 23.2 290 59-426 50-340 (703)
238 KOG2321 WD40 repeat protein [G 99.5 3.3E-12 7.1E-17 130.2 23.5 281 351-650 49-343 (703)
239 KOG2111 Uncharacterized conser 99.5 2.9E-11 6.4E-16 114.8 27.7 104 414-526 152-258 (346)
240 PRK02889 tolB translocation pr 99.5 2.7E-12 5.8E-17 140.0 24.3 239 376-631 176-425 (427)
241 PF08662 eIF2A: Eukaryotic tra 99.5 3E-12 6.5E-17 121.9 21.6 151 24-183 10-185 (194)
242 KOG2315 Predicted translation 99.5 3.8E-11 8.3E-16 122.8 30.1 317 22-474 37-392 (566)
243 PRK04922 tolB translocation pr 99.5 3.2E-12 7E-17 139.9 24.3 235 376-630 184-432 (433)
244 PF08662 eIF2A: Eukaryotic tra 99.5 2.2E-12 4.9E-17 122.8 19.5 149 498-651 9-180 (194)
245 PRK03629 tolB translocation pr 99.5 6.7E-12 1.5E-16 136.6 25.0 189 24-219 203-407 (429)
246 KOG3881 Uncharacterized conser 99.5 5.1E-12 1.1E-16 123.2 21.0 211 348-573 100-327 (412)
247 PRK05137 tolB translocation pr 99.5 1.5E-11 3.2E-16 135.0 27.4 235 376-630 182-432 (435)
248 KOG2314 Translation initiation 99.5 1.1E-10 2.4E-15 118.8 29.7 157 42-204 192-362 (698)
249 KOG2041 WD40 repeat protein [G 99.4 3E-10 6.5E-15 118.8 31.9 496 24-567 19-620 (1189)
250 PRK05137 tolB translocation pr 99.4 3.2E-11 7E-16 132.3 26.3 215 421-651 182-413 (435)
251 KOG4547 WD40 repeat-containing 99.4 8.7E-12 1.9E-16 128.5 19.1 208 413-652 7-222 (541)
252 PRK02889 tolB translocation pr 99.4 1.4E-11 3E-16 134.4 21.0 206 421-642 176-392 (427)
253 PRK04922 tolB translocation pr 99.4 4.8E-11 1.1E-15 130.7 25.4 195 41-242 185-391 (433)
254 KOG2314 Translation initiation 99.4 3.9E-10 8.5E-15 114.9 29.0 260 376-651 282-574 (698)
255 KOG1409 Uncharacterized conser 99.4 2.1E-11 4.5E-16 116.8 18.2 249 342-608 13-270 (404)
256 PF04762 IKI3: IKI3 family; I 99.4 2.5E-07 5.3E-12 108.6 55.2 463 24-566 80-639 (928)
257 TIGR02658 TTQ_MADH_Hv methylam 99.4 5E-09 1.1E-13 107.3 36.3 114 71-186 11-146 (352)
258 KOG1354 Serine/threonine prote 99.4 3.1E-11 6.8E-16 115.5 18.0 254 396-654 25-363 (433)
259 COG4946 Uncharacterized protei 99.4 8.1E-09 1.8E-13 103.4 34.8 200 13-221 263-480 (668)
260 KOG1409 Uncharacterized conser 99.4 6.4E-11 1.4E-15 113.6 19.3 340 93-566 15-394 (404)
261 PF10282 Lactonase: Lactonase, 99.4 1E-08 2.2E-13 108.6 37.8 225 359-586 92-345 (345)
262 TIGR03300 assembly_YfgL outer 99.3 2.3E-09 5E-14 115.9 33.0 307 72-469 65-376 (377)
263 PRK01029 tolB translocation pr 99.3 3E-10 6.4E-15 123.1 25.3 197 24-223 189-408 (428)
264 TIGR02800 propeller_TolB tol-p 99.3 4.5E-10 9.7E-15 123.8 26.6 234 376-628 170-416 (417)
265 PRK04792 tolB translocation pr 99.3 6.6E-10 1.4E-14 121.5 26.9 235 377-630 199-446 (448)
266 PRK00178 tolB translocation pr 99.3 8.1E-10 1.8E-14 121.7 27.3 235 377-630 180-427 (430)
267 PF10282 Lactonase: Lactonase, 99.3 4.4E-08 9.6E-13 103.7 38.2 291 326-628 13-345 (345)
268 TIGR03300 assembly_YfgL outer 99.3 5.8E-09 1.3E-13 112.8 31.9 264 367-647 106-376 (377)
269 PRK04792 tolB translocation pr 99.3 1.4E-09 3E-14 119.0 27.1 183 21-208 175-369 (448)
270 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.3E-08 2.9E-13 104.2 31.8 248 13-288 40-336 (352)
271 TIGR02800 propeller_TolB tol-p 99.3 1.8E-09 3.9E-14 119.0 27.6 175 41-221 171-357 (417)
272 PRK01029 tolB translocation pr 99.3 1.4E-09 3.1E-14 117.9 25.5 220 421-653 165-406 (428)
273 PRK00178 tolB translocation pr 99.2 1.3E-09 2.8E-14 120.1 24.8 190 24-219 203-407 (430)
274 KOG1064 RAVE (regulator of V-A 99.2 1.7E-10 3.7E-15 132.6 14.9 197 394-617 2206-2407(2439)
275 KOG0280 Uncharacterized conser 99.2 4.5E-09 9.8E-14 99.0 21.5 273 324-611 44-336 (339)
276 COG2706 3-carboxymuconate cycl 99.1 2.4E-07 5.2E-12 91.0 31.2 268 375-651 15-322 (346)
277 PF15492 Nbas_N: Neuroblastoma 99.1 4E-08 8.7E-13 93.3 25.1 205 24-230 2-271 (282)
278 PLN02919 haloacid dehalogenase 99.1 4.6E-08 9.9E-13 117.1 31.7 253 357-612 571-892 (1057)
279 PLN02919 haloacid dehalogenase 99.1 3.5E-08 7.6E-13 118.1 30.6 246 406-653 575-891 (1057)
280 KOG1064 RAVE (regulator of V-A 99.1 2.5E-10 5.4E-15 131.3 11.5 186 28-230 2217-2410(2439)
281 KOG4190 Uncharacterized conser 99.1 2.2E-10 4.7E-15 116.2 9.1 171 53-225 728-913 (1034)
282 COG2706 3-carboxymuconate cycl 99.1 5.9E-07 1.3E-11 88.3 31.8 180 39-220 15-223 (346)
283 KOG3914 WD repeat protein WDR4 99.0 2.4E-09 5.3E-14 105.6 12.3 157 24-185 67-232 (390)
284 KOG0309 Conserved WD40 repeat- 99.0 6.5E-09 1.4E-13 109.6 15.3 203 15-219 20-233 (1081)
285 KOG4532 WD40-like repeat conta 99.0 1E-07 2.2E-12 88.7 21.4 217 413-641 86-323 (344)
286 KOG2114 Vacuolar assembly/sort 99.0 2.2E-06 4.7E-11 93.2 34.0 213 406-622 31-258 (933)
287 KOG0280 Uncharacterized conser 99.0 5.1E-08 1.1E-12 92.1 19.0 192 456-653 87-287 (339)
288 KOG4532 WD40-like repeat conta 99.0 9.1E-08 2E-12 89.1 20.2 232 365-607 83-330 (344)
289 PRK11138 outer membrane biogen 99.0 4.2E-07 9E-12 98.7 29.3 150 31-184 69-231 (394)
290 KOG3617 WD40 and TPR repeat-co 99.0 5.9E-08 1.3E-12 104.0 21.2 308 106-454 19-368 (1416)
291 PRK04043 tolB translocation pr 99.0 1.2E-07 2.5E-12 102.2 23.2 178 24-209 192-388 (419)
292 KOG4190 Uncharacterized conser 99.0 4.5E-09 9.8E-14 106.8 11.2 249 390-653 729-991 (1034)
293 KOG3914 WD repeat protein WDR4 98.9 6.4E-09 1.4E-13 102.6 11.7 160 448-617 69-232 (390)
294 COG5170 CDC55 Serine/threonine 98.9 3E-08 6.6E-13 94.0 15.4 250 396-650 26-367 (460)
295 KOG0309 Conserved WD40 repeat- 98.9 1.4E-08 3E-13 107.1 14.2 277 365-653 35-342 (1081)
296 PRK04043 tolB translocation pr 98.9 7.9E-07 1.7E-11 95.8 28.0 212 376-608 169-400 (419)
297 KOG2695 WD40 repeat protein [G 98.9 3.7E-09 8.1E-14 101.7 8.4 169 448-629 218-401 (425)
298 PF09384 UTP15_C: UTP15 C term 98.9 1E-08 2.3E-13 91.5 10.8 126 668-798 21-147 (148)
299 PRK11138 outer membrane biogen 98.9 3.1E-06 6.6E-11 92.0 31.3 263 367-649 121-393 (394)
300 PF04003 Utp12: Dip2/Utp12 Fam 98.8 6.7E-09 1.5E-13 89.1 6.6 93 710-803 14-110 (110)
301 PF00930 DPPIV_N: Dipeptidyl p 98.8 1.2E-05 2.6E-10 85.6 32.0 164 28-205 1-200 (353)
302 PF13360 PQQ_2: PQQ-like domai 98.8 2.8E-06 6.2E-11 85.4 25.8 218 39-287 2-235 (238)
303 KOG4649 PQQ (pyrrolo-quinoline 98.8 5.8E-05 1.3E-09 70.7 30.6 200 18-227 9-215 (354)
304 KOG1920 IkappaB kinase complex 98.8 0.00069 1.5E-08 77.4 44.4 285 60-383 68-364 (1265)
305 PF07433 DUF1513: Protein of u 98.7 9E-06 2E-10 80.4 25.8 205 22-230 7-259 (305)
306 KOG2695 WD40 repeat protein [G 98.7 3.5E-08 7.6E-13 95.1 8.7 155 31-188 225-388 (425)
307 PF08450 SGL: SMP-30/Gluconola 98.7 3E-05 6.5E-10 78.2 30.5 219 358-597 4-244 (246)
308 KOG3617 WD40 and TPR repeat-co 98.7 1.9E-06 4.1E-11 92.8 22.0 107 24-132 20-131 (1416)
309 COG5170 CDC55 Serine/threonine 98.7 5.3E-07 1.1E-11 85.8 16.0 169 393-566 169-367 (460)
310 PF08450 SGL: SMP-30/Gluconola 98.7 5.3E-05 1.1E-09 76.4 31.7 205 24-237 4-232 (246)
311 PF13360 PQQ_2: PQQ-like domai 98.7 1.4E-05 3E-10 80.4 27.1 222 375-615 2-237 (238)
312 KOG0882 Cyclophilin-related pe 98.7 3.9E-07 8.5E-12 91.2 14.4 251 352-616 8-313 (558)
313 KOG4714 Nucleoporin [Nuclear s 98.7 1.3E-07 2.9E-12 87.7 10.0 165 54-219 83-255 (319)
314 KOG4649 PQQ (pyrrolo-quinoline 98.7 0.0002 4.3E-09 67.2 30.4 143 68-214 18-161 (354)
315 PF15492 Nbas_N: Neuroblastoma 98.7 1.2E-05 2.6E-10 76.8 22.9 199 447-653 3-262 (282)
316 PF07433 DUF1513: Protein of u 98.6 4.9E-05 1.1E-09 75.3 27.8 242 358-641 9-277 (305)
317 KOG1275 PAB-dependent poly(A) 98.6 5.9E-07 1.3E-11 97.8 15.6 180 31-216 147-340 (1118)
318 KOG0882 Cyclophilin-related pe 98.6 5.5E-07 1.2E-11 90.1 13.5 213 439-660 7-241 (558)
319 PF06433 Me-amine-dh_H: Methyl 98.6 0.00011 2.5E-09 73.6 29.7 173 41-220 18-215 (342)
320 KOG1645 RING-finger-containing 98.6 3.2E-06 7E-11 83.7 18.4 260 378-651 175-462 (463)
321 PF00400 WD40: WD domain, G-be 98.6 1.9E-07 4.1E-12 62.7 6.3 39 92-130 1-39 (39)
322 PF00400 WD40: WD domain, G-be 98.6 1.8E-07 4E-12 62.8 6.0 39 50-88 1-39 (39)
323 KOG4714 Nucleoporin [Nuclear s 98.6 1.6E-06 3.4E-11 80.7 13.8 158 355-525 90-255 (319)
324 PF06433 Me-amine-dh_H: Methyl 98.5 0.00013 2.9E-09 73.1 27.6 193 376-576 118-330 (342)
325 KOG1645 RING-finger-containing 98.5 1.1E-05 2.3E-10 80.2 19.4 94 84-179 175-269 (463)
326 PF11768 DUF3312: Protein of u 98.5 0.0021 4.5E-08 68.4 37.5 179 534-721 257-474 (545)
327 KOG1832 HIV-1 Vpr-binding prot 98.5 7.6E-08 1.6E-12 103.7 4.0 219 389-636 1094-1317(1516)
328 KOG1832 HIV-1 Vpr-binding prot 98.5 1.4E-07 2.9E-12 101.9 5.8 264 346-637 1094-1376(1516)
329 PRK02888 nitrous-oxide reducta 98.5 0.00013 2.8E-09 79.3 27.4 207 407-640 201-451 (635)
330 KOG3621 WD40 repeat-containing 98.5 1.5E-05 3.3E-10 85.1 19.9 195 26-226 40-253 (726)
331 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00044 9.6E-09 73.6 31.0 66 69-136 1-75 (353)
332 KOG1275 PAB-dependent poly(A) 98.4 3.3E-06 7.2E-11 92.1 14.4 181 456-651 149-343 (1118)
333 KOG1920 IkappaB kinase complex 98.4 0.00021 4.6E-09 81.4 28.3 243 352-611 67-325 (1265)
334 KOG1897 Damage-specific DNA bi 98.3 0.011 2.5E-07 66.4 45.6 426 41-524 471-942 (1096)
335 KOG2066 Vacuolar assembly/sort 98.3 1.7E-05 3.7E-10 85.9 15.9 180 442-650 40-233 (846)
336 cd00216 PQQ_DH Dehydrogenases 98.3 0.0014 3E-08 73.0 31.7 190 30-224 61-325 (488)
337 KOG2066 Vacuolar assembly/sort 98.3 1.4E-05 3E-10 86.5 14.2 156 60-230 39-199 (846)
338 KOG2114 Vacuolar assembly/sort 98.3 0.00012 2.7E-09 80.0 21.2 206 20-229 23-254 (933)
339 cd00216 PQQ_DH Dehydrogenases 98.3 0.0017 3.7E-08 72.3 31.2 106 508-618 303-434 (488)
340 PF08596 Lgl_C: Lethal giant l 98.2 0.0021 4.6E-08 68.3 30.1 271 104-454 3-319 (395)
341 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0012 2.7E-08 71.1 28.1 189 24-223 33-251 (410)
342 PRK02888 nitrous-oxide reducta 98.2 0.00045 9.8E-09 75.2 24.2 194 16-219 187-405 (635)
343 PF04053 Coatomer_WDAD: Coatom 98.2 0.00027 5.8E-09 76.0 21.9 161 23-199 36-207 (443)
344 KOG3621 WD40 repeat-containing 98.2 0.00029 6.2E-09 75.7 21.4 137 59-197 32-179 (726)
345 PF04053 Coatomer_WDAD: Coatom 98.1 0.0033 7.1E-08 67.8 29.1 221 398-654 34-266 (443)
346 PF06977 SdiA-regulated: SdiA- 98.1 0.0017 3.8E-08 63.7 24.2 189 23-215 25-247 (248)
347 COG3391 Uncharacterized conser 98.1 0.0015 3.3E-08 70.0 25.5 208 21-230 75-295 (381)
348 COG0823 TolB Periplasmic compo 97.9 0.00031 6.8E-09 75.3 16.0 180 25-209 198-390 (425)
349 PF14583 Pectate_lyase22: Olig 97.9 0.048 1E-06 56.4 32.2 166 44-210 14-209 (386)
350 COG3391 Uncharacterized conser 97.9 0.027 5.9E-07 60.5 29.9 235 406-652 38-285 (381)
351 PF08596 Lgl_C: Lethal giant l 97.9 0.0038 8.2E-08 66.4 22.9 276 355-649 3-334 (395)
352 PF06977 SdiA-regulated: SdiA- 97.8 0.013 2.9E-07 57.6 24.9 211 346-563 14-247 (248)
353 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.089 1.9E-06 58.9 36.2 109 30-141 69-198 (527)
354 PF11768 DUF3312: Protein of u 97.8 0.00055 1.2E-08 72.6 16.0 90 42-134 238-331 (545)
355 PF04841 Vps16_N: Vps16, N-ter 97.8 0.083 1.8E-06 57.2 35.7 214 377-606 62-285 (410)
356 COG0823 TolB Periplasmic compo 97.8 0.0025 5.5E-08 68.4 19.8 181 406-598 200-389 (425)
357 PF02897 Peptidase_S9_N: Proly 97.7 0.034 7.3E-07 61.1 29.4 204 20-228 124-367 (414)
358 PF14583 Pectate_lyase22: Olig 97.7 0.078 1.7E-06 54.9 30.4 196 25-223 41-277 (386)
359 PF04192 Utp21: Utp21 specific 97.7 0.00011 2.3E-09 71.4 7.9 89 712-807 139-236 (237)
360 PF03178 CPSF_A: CPSF A subuni 97.7 0.02 4.3E-07 60.2 25.8 218 422-649 3-264 (321)
361 PRK13616 lipoprotein LpqB; Pro 97.7 0.0025 5.3E-08 71.6 19.3 179 23-213 353-563 (591)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.12 2.7E-06 57.8 32.5 61 558-619 441-501 (527)
363 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.0098 2.1E-07 62.9 21.4 90 486-575 299-407 (415)
364 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.08 1.7E-06 56.2 27.9 88 24-112 6-118 (415)
365 KOG1008 Uncharacterized conser 97.6 2.3E-05 4.9E-10 82.6 1.5 198 443-651 58-276 (783)
366 COG3386 Gluconolactonase [Carb 97.6 0.024 5.1E-07 58.0 23.2 223 406-639 32-274 (307)
367 PF03178 CPSF_A: CPSF A subuni 97.6 0.024 5.2E-07 59.7 23.9 177 376-566 2-202 (321)
368 PF08553 VID27: VID27 cytoplas 97.5 0.012 2.6E-07 67.1 21.6 135 79-217 501-646 (794)
369 COG3386 Gluconolactonase [Carb 97.5 0.045 9.7E-07 56.0 23.8 208 25-238 30-263 (307)
370 TIGR03074 PQQ_membr_DH membran 97.5 0.36 7.8E-06 56.2 35.1 195 30-227 194-486 (764)
371 KOG1897 Damage-specific DNA bi 97.5 0.34 7.4E-06 55.2 56.1 291 314-608 267-613 (1096)
372 COG3490 Uncharacterized protei 97.5 0.0074 1.6E-07 58.0 16.0 197 13-216 109-346 (366)
373 PF00780 CNH: CNH domain; Int 97.5 0.13 2.8E-06 52.8 27.2 147 28-184 4-173 (275)
374 PF00780 CNH: CNH domain; Int 97.4 0.089 1.9E-06 54.0 25.8 230 406-653 3-258 (275)
375 PF02897 Peptidase_S9_N: Proly 97.4 0.13 2.8E-06 56.4 28.5 239 406-653 131-407 (414)
376 PRK13616 lipoprotein LpqB; Pro 97.4 0.019 4.1E-07 64.7 21.1 149 59-217 348-524 (591)
377 KOG4640 Anaphase-promoting com 97.3 0.00091 2E-08 71.1 9.5 78 61-139 21-99 (665)
378 KOG1008 Uncharacterized conser 97.3 7.8E-05 1.7E-09 78.8 1.7 203 397-608 57-275 (783)
379 KOG4640 Anaphase-promoting com 97.3 0.0011 2.3E-08 70.5 9.3 93 494-587 20-114 (665)
380 smart00320 WD40 WD40 repeats. 97.3 0.0009 1.9E-08 44.0 5.7 39 92-130 2-40 (40)
381 smart00320 WD40 WD40 repeats. 97.2 0.001 2.2E-08 43.8 5.3 39 50-88 2-40 (40)
382 PF08553 VID27: VID27 cytoplas 97.2 0.0087 1.9E-07 68.1 15.4 145 414-565 497-646 (794)
383 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.032 7E-07 46.2 14.5 102 63-171 2-109 (111)
384 PF05096 Glu_cyclase_2: Glutam 97.1 0.19 4.2E-06 49.2 22.2 173 25-207 50-249 (264)
385 KOG2079 Vacuolar assembly/sort 97.1 0.0062 1.3E-07 69.1 13.4 109 65-175 92-202 (1206)
386 PF10647 Gmad1: Lipoprotein Lp 97.1 0.13 2.7E-06 51.7 21.4 147 22-172 26-192 (253)
387 KOG2395 Protein involved in va 97.1 0.019 4.1E-07 60.2 15.4 147 408-565 343-499 (644)
388 KOG2079 Vacuolar assembly/sort 97.0 0.0082 1.8E-07 68.1 13.3 105 25-131 93-202 (1206)
389 PRK10115 protease 2; Provision 97.0 1.1 2.4E-05 52.2 33.2 194 20-218 127-344 (686)
390 KOG4499 Ca2+-binding protein R 97.0 0.25 5.3E-06 46.5 19.9 136 494-630 108-263 (310)
391 COG3490 Uncharacterized protei 97.0 0.22 4.7E-06 48.3 20.1 98 24-121 72-180 (366)
392 KOG2395 Protein involved in va 96.8 0.018 3.8E-07 60.3 12.9 143 70-217 343-499 (644)
393 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.051 1.1E-06 45.0 13.1 101 444-561 2-109 (111)
394 KOG2444 WD40 repeat protein [G 96.8 0.0018 3.9E-08 60.3 4.9 141 76-220 34-179 (238)
395 PF05694 SBP56: 56kDa selenium 96.8 0.33 7.2E-06 50.8 21.4 191 30-220 86-344 (461)
396 TIGR03074 PQQ_membr_DH membran 96.8 1.7 3.7E-05 50.7 37.8 114 114-228 194-354 (764)
397 PF14870 PSII_BNR: Photosynthe 96.8 0.51 1.1E-05 48.1 22.5 152 58-215 142-301 (302)
398 KOG2444 WD40 repeat protein [G 96.7 0.003 6.6E-08 58.8 5.8 104 505-608 69-177 (238)
399 PHA02713 hypothetical protein; 96.7 0.15 3.2E-06 57.8 20.6 225 377-620 273-545 (557)
400 PHA02713 hypothetical protein; 96.7 0.12 2.5E-06 58.7 19.7 144 503-652 349-535 (557)
401 COG3204 Uncharacterized protei 96.7 0.38 8.2E-06 47.3 19.9 176 185-385 82-264 (316)
402 PF10647 Gmad1: Lipoprotein Lp 96.5 0.73 1.6E-05 46.2 21.6 147 443-600 25-187 (253)
403 PF14727 PHTB1_N: PTHB1 N-term 96.4 1.9 4.1E-05 46.2 30.0 144 113-281 36-203 (418)
404 KOG4499 Ca2+-binding protein R 96.3 0.19 4.2E-06 47.1 14.8 130 26-155 115-264 (310)
405 PF10168 Nup88: Nuclear pore c 96.3 1.6 3.4E-05 50.6 25.0 93 103-220 85-181 (717)
406 COG3204 Uncharacterized protei 96.2 1.2 2.6E-05 43.9 19.8 163 56-220 81-265 (316)
407 KOG4441 Proteins containing BT 96.1 0.46 1E-05 53.8 19.8 224 412-651 286-547 (571)
408 PF10433 MMS1_N: Mono-function 96.1 3.5 7.6E-05 46.5 40.2 402 190-630 45-503 (504)
409 KOG1916 Nuclear protein, conta 96.0 0.0019 4.1E-08 71.3 0.3 187 421-613 111-328 (1283)
410 KOG4441 Proteins containing BT 96.0 0.72 1.6E-05 52.2 20.6 227 365-611 284-549 (571)
411 PF12894 Apc4_WD40: Anaphase-p 96.0 0.025 5.5E-07 38.9 5.6 34 60-94 11-44 (47)
412 PF05096 Glu_cyclase_2: Glutam 96.0 1.9 4.1E-05 42.5 23.4 182 443-639 46-249 (264)
413 PF14870 PSII_BNR: Photosynthe 95.9 2.5 5.3E-05 43.2 27.2 111 99-213 141-256 (302)
414 PLN00033 photosystem II stabil 95.8 0.56 1.2E-05 50.1 17.7 147 18-173 235-396 (398)
415 PF14727 PHTB1_N: PTHB1 N-term 95.8 3.6 7.8E-05 44.1 30.0 301 315-654 36-364 (418)
416 PRK13684 Ycf48-like protein; P 95.7 2.1 4.6E-05 45.0 21.5 150 60-217 172-330 (334)
417 KOG1896 mRNA cleavage and poly 95.7 6.5 0.00014 46.6 45.0 186 419-608 1002-1213(1366)
418 PF12894 Apc4_WD40: Anaphase-p 95.4 0.055 1.2E-06 37.2 5.4 30 102-131 11-40 (47)
419 KOG1898 Splicing factor 3b, su 95.3 7.7 0.00017 45.3 37.2 106 73-178 550-675 (1205)
420 PF05694 SBP56: 56kDa selenium 95.1 3.8 8.3E-05 43.3 19.9 199 456-654 89-346 (461)
421 TIGR02604 Piru_Ver_Nterm putat 95.1 0.81 1.8E-05 49.0 16.2 143 496-641 15-204 (367)
422 KOG3630 Nuclear pore complex, 95.0 0.23 5E-06 57.3 12.0 142 495-638 101-261 (1405)
423 PHA03098 kelch-like protein; P 95.0 1 2.3E-05 51.3 17.9 172 41-221 312-514 (534)
424 PF14761 HPS3_N: Hermansky-Pud 95.0 2.1 4.5E-05 40.5 16.2 110 24-135 22-166 (215)
425 PF08728 CRT10: CRT10; InterP 94.9 1.1 2.3E-05 50.9 16.7 154 20-175 39-245 (717)
426 PHA03098 kelch-like protein; P 94.7 1.4 3.1E-05 50.2 17.9 105 504-612 388-515 (534)
427 PF07995 GSDH: Glucose / Sorbo 94.6 7.1 0.00015 41.0 23.3 239 399-645 4-330 (331)
428 KOG2280 Vacuolar assembly/sort 94.4 2.2 4.8E-05 47.5 17.2 181 41-227 65-255 (829)
429 PF15390 DUF4613: Domain of un 94.2 1.4 3E-05 47.8 14.7 158 397-565 20-185 (671)
430 PF12234 Rav1p_C: RAVE protein 94.2 1.7 3.6E-05 48.8 16.1 115 101-217 28-155 (631)
431 PF12234 Rav1p_C: RAVE protein 93.9 1.7 3.8E-05 48.7 15.4 118 531-650 24-156 (631)
432 PF15390 DUF4613: Domain of un 93.7 3.2 6.8E-05 45.1 16.2 115 61-177 57-187 (671)
433 PF10168 Nup88: Nuclear pore c 93.7 14 0.00029 43.1 22.8 96 60-178 84-181 (717)
434 COG5276 Uncharacterized conser 93.7 8 0.00017 38.3 26.4 273 355-649 88-368 (370)
435 PLN00033 photosystem II stabil 93.7 12 0.00026 40.2 22.5 144 63-215 241-396 (398)
436 COG3292 Predicted periplasmic 93.6 13 0.00028 40.5 23.9 71 101-177 163-234 (671)
437 smart00036 CNH Domain found in 93.6 10 0.00022 39.2 28.4 239 367-618 14-280 (302)
438 PHA02790 Kelch-like protein; P 93.5 5 0.00011 44.8 18.7 182 412-611 273-473 (480)
439 PF08728 CRT10: CRT10; InterP 93.5 3.2 7E-05 47.2 16.7 111 496-607 102-245 (717)
440 PF12657 TFIIIC_delta: Transcr 93.4 0.5 1.1E-05 44.2 9.1 32 103-134 86-123 (173)
441 TIGR02604 Piru_Ver_Nterm putat 93.3 2.5 5.5E-05 45.3 15.5 98 22-121 16-142 (367)
442 PRK10115 protease 2; Provision 93.2 21 0.00046 41.8 29.3 234 406-652 134-396 (686)
443 PF14761 HPS3_N: Hermansky-Pud 93.1 6.2 0.00013 37.4 15.3 111 64-179 21-166 (215)
444 PHA02790 Kelch-like protein; P 93.1 5.6 0.00012 44.4 18.2 167 41-220 288-472 (480)
445 PRK13684 Ycf48-like protein; P 92.9 14 0.0003 38.9 30.2 150 494-649 172-330 (334)
446 PF07569 Hira: TUP1-like enhan 92.8 1.9 4.2E-05 41.9 12.3 71 544-615 18-102 (219)
447 KOG1916 Nuclear protein, conta 92.6 0.067 1.4E-06 59.8 2.2 103 348-453 127-236 (1283)
448 KOG2247 WD40 repeat-containing 92.6 0.24 5.1E-06 51.9 5.9 268 406-694 42-320 (615)
449 KOG3630 Nuclear pore complex, 92.6 1.2 2.6E-05 51.9 11.7 144 61-207 101-262 (1405)
450 COG3823 Glutamine cyclotransfe 92.2 9.9 0.00022 35.6 14.9 171 412-596 57-247 (262)
451 PF14269 Arylsulfotran_2: Aryl 92.1 16 0.00035 37.6 22.0 113 63-175 59-219 (299)
452 COG1770 PtrB Protease II [Amin 92.1 24 0.00052 39.6 21.9 199 17-221 126-351 (682)
453 PF12768 Rax2: Cortical protei 92.0 3.3 7E-05 41.9 13.0 114 82-196 16-144 (281)
454 PF10313 DUF2415: Uncharacteri 91.7 0.82 1.8E-05 30.5 5.5 33 103-135 1-36 (43)
455 COG4590 ABC-type uncharacteriz 91.4 0.86 1.9E-05 47.2 8.2 155 23-181 224-391 (733)
456 KOG2377 Uncharacterized conser 91.4 5.7 0.00012 41.6 13.9 139 24-164 27-173 (657)
457 KOG2280 Vacuolar assembly/sort 91.2 31 0.00067 39.1 23.5 54 536-589 216-270 (829)
458 KOG3616 Selective LIM binding 91.0 2.4 5.1E-05 46.9 11.3 71 59-132 13-83 (1636)
459 COG1520 FOG: WD40-like repeat 90.9 26 0.00056 37.7 20.0 197 28-229 66-279 (370)
460 PF07569 Hira: TUP1-like enhan 90.6 1.6 3.4E-05 42.5 9.1 66 68-134 18-97 (219)
461 COG3823 Glutamine cyclotransfe 90.6 9.5 0.00021 35.7 13.2 68 160-227 58-128 (262)
462 PF13449 Phytase-like: Esteras 90.6 15 0.00032 38.6 17.1 99 496-595 86-231 (326)
463 COG4257 Vgb Streptogramin lyas 90.5 19 0.00041 35.4 20.4 224 406-650 69-305 (353)
464 PF07995 GSDH: Glucose / Sorbo 90.4 26 0.00056 36.9 28.8 68 494-561 252-330 (331)
465 PF14781 BBS2_N: Ciliary BBSom 90.3 12 0.00025 32.6 13.7 116 106-224 2-131 (136)
466 KOG2377 Uncharacterized conser 90.3 27 0.00059 36.9 19.5 139 64-207 26-172 (657)
467 COG5167 VID27 Protein involved 89.8 5.9 0.00013 42.1 12.6 143 70-218 477-632 (776)
468 PF08801 Nucleoporin_N: Nup133 89.8 9.5 0.00021 41.9 15.6 164 25-219 31-220 (422)
469 PF12768 Rax2: Cortical protei 89.3 13 0.00028 37.6 14.5 113 41-154 17-146 (281)
470 KOG2247 WD40 repeat-containing 89.0 0.05 1.1E-06 56.7 -2.7 145 64-213 38-183 (615)
471 PF10313 DUF2415: Uncharacteri 88.9 1.9 4.1E-05 28.8 5.5 31 61-91 1-34 (43)
472 KOG3616 Selective LIM binding 88.8 6.3 0.00014 43.8 12.5 79 534-616 335-413 (1636)
473 PF03022 MRJP: Major royal jel 88.7 31 0.00067 35.3 20.4 163 41-206 35-253 (287)
474 PF13449 Phytase-like: Esteras 88.6 24 0.00052 37.1 16.8 157 494-651 19-250 (326)
475 PRK14131 N-acetylneuraminic ac 88.6 39 0.00084 36.4 20.4 40 602-641 314-353 (376)
476 KOG4460 Nuclear pore complex, 88.5 17 0.00037 39.1 14.8 26 496-521 105-130 (741)
477 TIGR02276 beta_rpt_yvtn 40-res 88.3 2.2 4.8E-05 28.4 6.0 39 29-68 1-41 (42)
478 TIGR03118 PEPCTERM_chp_1 conse 88.3 30 0.00066 34.8 24.8 218 406-630 30-307 (336)
479 PF14781 BBS2_N: Ciliary BBSom 87.5 18 0.0004 31.4 13.2 113 501-616 5-133 (136)
480 PF04699 P16-Arc: ARP2/3 compl 87.4 2.5 5.4E-05 37.8 7.1 91 667-758 38-138 (152)
481 COG4590 ABC-type uncharacteriz 87.0 5.7 0.00012 41.5 10.3 244 406-652 122-388 (733)
482 KOG4460 Nuclear pore complex, 86.7 14 0.00031 39.6 13.1 102 61-185 104-207 (741)
483 COG5167 VID27 Protein involved 86.5 17 0.00037 38.9 13.5 144 25-175 473-631 (776)
484 KOG3380 Actin-related protein 86.3 6.5 0.00014 34.3 8.7 92 668-760 38-140 (152)
485 TIGR03547 muta_rot_YjhT mutatr 86.3 49 0.0011 35.1 23.2 42 601-642 291-332 (346)
486 TIGR02276 beta_rpt_yvtn 40-res 84.5 5.2 0.00011 26.6 6.2 40 70-110 1-41 (42)
487 KOG1898 Splicing factor 3b, su 84.3 99 0.0021 36.8 31.0 81 116-196 551-640 (1205)
488 TIGR03118 PEPCTERM_chp_1 conse 84.2 50 0.0011 33.4 22.6 201 24-227 27-288 (336)
489 KOG1900 Nuclear pore complex, 84.2 14 0.0003 44.6 12.9 146 415-567 93-273 (1311)
490 PF11635 Med16: Mediator compl 84.0 91 0.002 37.1 20.0 68 494-561 259-345 (753)
491 PF10395 Utp8: Utp8 family; I 84.0 85 0.0018 35.8 21.5 203 24-229 32-270 (670)
492 smart00036 CNH Domain found in 83.4 59 0.0013 33.6 25.5 61 28-90 10-73 (302)
493 PF05935 Arylsulfotrans: Aryls 83.3 58 0.0013 36.3 17.2 142 41-188 129-313 (477)
494 PF05935 Arylsulfotrans: Aryls 83.2 31 0.00068 38.4 15.1 118 25-145 153-314 (477)
495 PF11635 Med16: Mediator compl 83.1 1.1E+02 0.0024 36.5 22.0 68 536-603 259-345 (753)
496 KOG1983 Tomosyn and related SN 82.4 20 0.00044 43.6 14.0 26 197-222 243-268 (993)
497 PF07250 Glyoxal_oxid_N: Glyox 82.4 33 0.00072 33.8 13.0 187 33-227 2-206 (243)
498 PF10433 MMS1_N: Mono-function 82.1 95 0.0021 35.0 39.5 217 20-240 44-310 (504)
499 TIGR03548 mutarot_permut cycli 81.9 71 0.0015 33.5 16.9 104 30-136 72-198 (323)
500 PF11715 Nup160: Nucleoporin N 81.7 14 0.0003 42.2 12.1 71 504-574 156-256 (547)
No 1
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-122 Score=942.21 Aligned_cols=765 Identities=47% Similarity=0.790 Sum_probs=713.1
Q ss_pred CCCCcccccccccccccccccCCceEEccCCCEEEEEeCCeEEEEEcCCCce-eeeec-CCCccEEEEEEcCCCCEEEEE
Q 002782 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASI-KSTIE-GGSDTITALALSPDDKLLFSS 78 (882)
Q Consensus 1 m~~~~l~~~~~~~~~~~~~y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~-~~~l~-~~~~~I~~l~~spd~~~las~ 78 (882)
|++..+|++|+..++++|||+||.++||++|+.|++.+++.|.+.|+.+++. +.... ...+.|++++++||+++|+++
T Consensus 1 ma~~~~Kk~ya~ers~epiYtGG~~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a 80 (775)
T KOG0319|consen 1 MAPMTEKKSYALERSLEPIYTGGPVAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTA 80 (775)
T ss_pred CCccchhhhhhhhhcccceecCCceeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEe
Confidence 8999999999999999999999999999999999999999999999999987 44333 356789999999999999999
Q ss_pred eCCCcEEEEECCCCeeEEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCC
Q 002782 79 GHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD 157 (882)
Q Consensus 79 ~~dg~i~iwd~~~~~~~~~~~~-h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~ 157 (882)
++.+.+++|++++++.++.+++ |.+||.-|+|+|.|.+|++|+.|+.++|||+..+.+++.|+||.+.|.++.|+|+..
T Consensus 81 ~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 81 SRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN 160 (775)
T ss_pred eccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeCCCcEEEEECCCCe-EEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEE
Q 002782 158 KSLLFSGSDDATVRVWDLLAKK-CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236 (882)
Q Consensus 158 ~~~l~sgs~dg~I~vwd~~~~~-~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 236 (882)
+.+|++|..|+.+++||+.++. |+.++..|.+.|+++.|++|+..++++|+|..+.+||+.+.+..+++|.++.++++.
T Consensus 161 ~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv 240 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVV 240 (775)
T ss_pred hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEE
Confidence 9999999999999999999554 588899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCce-eeeecCCceeeeeccCCcCcceeEEEEccC
Q 002782 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC-LYEQKSSDVTISFEMDDSKRGFTAATVLPS 315 (882)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (882)
+.+++.. ....++++.|.+|.++.|+..++. ...+..++ ...+..+...+.
T Consensus 241 ~l~~~~~------------------~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~----------~~e~~~~~~~~~ 292 (775)
T KOG0319|consen 241 RLREELG------------------GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD----------SEEIDHLLAIES 292 (775)
T ss_pred EechhcC------------------CcceEEEEecCCceEEEEecccchhhhhhccCC----------chhhhcceeccc
Confidence 9877321 113589999999999999999983 33333332 123778888899
Q ss_pred CCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCC
Q 002782 316 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH 395 (882)
Q Consensus 316 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 395 (882)
...++++++++++.+|+.. ++...+.+.|++++|.+++|.+++.++++++++.+.+++|+..+..+. .+.||
T Consensus 293 ~~~~l~vtaeQnl~l~d~~-------~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH 364 (775)
T KOG0319|consen 293 MSQLLLVTAEQNLFLYDED-------ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGH 364 (775)
T ss_pred cCceEEEEccceEEEEEcc-------ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCc
Confidence 9999999999999999766 678889999999999999999999999999999999999999998888 89999
Q ss_pred CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc----eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEec
Q 002782 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (882)
Q Consensus 396 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~ 471 (882)
++.|.+++ .+..|. ++++|++|.++++|.++++ .++....+|.+.|.+++++..+..+|+++|.|+++++|++
T Consensus 365 ~e~vlSL~--~~~~g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 365 TEAVLSLD--VWSSGD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred hhheeeee--ecccCc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 99999998 667774 4999999999999977543 3556678999999999999998899999999999999999
Q ss_pred CCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEE
Q 002782 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551 (882)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 551 (882)
....+. ..+.......+...|.++|+|++++|+.+++||||+|++.+||+++++....++.||..+|+++.|+|.++.+
T Consensus 442 ~~s~~~-~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~l 520 (775)
T KOG0319|consen 442 PKSKET-AFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLL 520 (775)
T ss_pred CCcccc-cccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecccccee
Confidence 874332 2355666777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCC
Q 002782 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK 631 (882)
Q Consensus 552 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~ 631 (882)
+|+|.|++|+||.+.++.|+++|+||...|..+.|..+|.+|+|++.||.|++|++++++|+.+++.|+++||+++.+|.
T Consensus 521 aT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~ 600 (775)
T KOG0319|consen 521 ATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPL 600 (775)
T ss_pred EeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCEEEEECCCHHHHHHHhhhhHHHHhccchHHHhhhccchHHHHHHHhhcCCchhHHHHHHHHHhcchhH
Q 002782 632 TEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAE 711 (882)
Q Consensus 632 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 711 (882)
+.+++||+.||.|.+|.+.|+++++++.+++++.++++|+++|++.+.+|.+|+.+|+.+.+|+.++.++..++++++ +
T Consensus 601 ~~~~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r~r~-~ 679 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYRERD-P 679 (775)
T ss_pred cceeEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHhcCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887766 6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHhccCCcchhhcccChHhHHhhhccchhhHHHHHHHHHh
Q 002782 712 LQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVR 791 (882)
Q Consensus 712 ~~l~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~ 791 (882)
.+|.+++..|+.++.+.||+|+++||||+|+|+++|++|+.+|+.+.|+++.+.|+..+++++|+||+||||+||+|+.|
T Consensus 680 e~l~~av~~L~~dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRHf~Rid~~~~ 759 (775)
T KOG0319|consen 680 EELGQAVFRLNEDQPEALLQFVVKWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEALLPYTQRHFRRIDRLVQ 759 (775)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhhhhHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhheeccccCCC
Q 002782 792 STFLLDYTLTGMSVI 806 (882)
Q Consensus 792 ~~~~~~~~~~~~~~~ 806 (882)
.+++|||+|.+|+.+
T Consensus 760 ~~~lLdf~~~eM~~~ 774 (775)
T KOG0319|consen 760 DSALLDFTWFEMRIS 774 (775)
T ss_pred hhHHHHHhhhheecC
Confidence 999999999999864
No 2
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-79 Score=625.57 Aligned_cols=766 Identities=22% Similarity=0.370 Sum_probs=588.5
Q ss_pred cccccccccccccCC-ceE----EccCCCEEEEEeCCeEEEEEcCCCceeeeec--CCCccEEEEEEcCCCCEEEEEeCC
Q 002782 9 SYGCEPVLQQFYGGG-PLV----VSSDGSFIACACGESINIVDLSNASIKSTIE--GGSDTITALALSPDDKLLFSSGHS 81 (882)
Q Consensus 9 ~~~~~~~~~~~y~g~-~va----~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~--~~~~~I~~l~~spd~~~las~~~d 81 (882)
.|++...+..+-+++ ++. =+..|+++|+.....|.+||+++|+....+. .....|+|++-+||.-+||+|+.|
T Consensus 7 rye~~~~fgviaS~~aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaD 86 (888)
T KOG0306|consen 7 RYEPAAVFGVIASEVANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYAD 86 (888)
T ss_pred cccccceeeeeecCccceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecC
Confidence 355666665555532 111 1235999999999999999999996655443 334589999999999999999999
Q ss_pred CcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEE
Q 002782 82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLL 161 (882)
Q Consensus 82 g~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l 161 (882)
|.|+||+..++....++.||+..|+++.|+..|.+||+||.|+.|.|||+-...-..+++||...|+..-|..+. .++
T Consensus 87 GsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~--~~l 164 (888)
T KOG0306|consen 87 GSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD--SFL 164 (888)
T ss_pred ceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC--eEE
Confidence 999999999999999999999999999999999999999999999999999888899999999999999998743 469
Q ss_pred EEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCC
Q 002782 162 FSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG 241 (882)
Q Consensus 162 ~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (882)
++.+.|+.|++||+.+..|..+...|.+.++++++.+ +.+++++.|+.+++|++.....-..-+ ..+.+..
T Consensus 165 vS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~-----~~~s~~~-- 235 (888)
T KOG0306|consen 165 VSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETN-----RYISTKL-- 235 (888)
T ss_pred EEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccccccccc-----ccceeec--
Confidence 9999999999999999999999999999999999987 789999999999999983211100000 0000000
Q ss_pred CCcccccccchhhh----hhccccccceEEEEEcCCCeEEEEECCCce-ee---ee-----c-CCc-------eeee---
Q 002782 242 SAFDSFLSSYNQQT----IKKKRRSLEIHFITVGERGIVRMWNADSAC-LY---EQ-----K-SSD-------VTIS--- 297 (882)
Q Consensus 242 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~-~~---~~-----~-~~~-------~~~~--- 297 (882)
.+.+.++. ...........+++.|.|..+.++.+.+.. +. .. + ... ...+
T Consensus 236 ------~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~ 309 (888)
T KOG0306|consen 236 ------RGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSD 309 (888)
T ss_pred ------cceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHH
Confidence 01111111 111122234578889999999999987761 11 00 0 000 0000
Q ss_pred ----eccCCcCcceeEEEEccCCCc--EEEEEeCCeEEEEEecccc--cccceeeeeeeecccCCceEEEEEeCCCCcEE
Q 002782 298 ----FEMDDSKRGFTAATVLPSNQG--LLCVTADQQLLLYTTVEVP--EKKMELILSKRLVGYNEEILDLKFLGEEEQYL 369 (882)
Q Consensus 298 ----~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 369 (882)
...-.....+....+.|.+.. .++...++.+..|.+.... .+...........||...|..++++. + +.+
T Consensus 310 ~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d-~~~ 387 (888)
T KOG0306|consen 310 EIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-D-SIL 387 (888)
T ss_pred HHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-C-cee
Confidence 000112234555666665443 3555888999999887622 12333444567889999999999985 3 344
Q ss_pred EEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEE
Q 002782 370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449 (882)
Q Consensus 370 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~ 449 (882)
...+..+.+.+|+..+.+|++++... .+.+.. |.|.+++ +++|.+.|.+.+||+.+...+....+|.+.|++++.
T Consensus 388 ~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~--Fvpgd~~-Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 388 LASGAGESIKIWNRDTLKCIRTITCG--YILASK--FVPGDRY-IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL 462 (888)
T ss_pred eeecCCCcEEEEEccCcceeEEeccc--cEEEEE--ecCCCce-EEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence 44444589999999999999999865 555555 7788887 999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEeeCCCeEEEEecCCCCCCCC---CcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc
Q 002782 450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL 526 (882)
Q Consensus 450 s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~ 526 (882)
+|++. .+++||.|.+|++||+.-....+. ...++....+ ......|.|+.+||||++||++-.|.+++||-+++.
T Consensus 463 ~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt-Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl 540 (888)
T KOG0306|consen 463 SPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT-LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL 540 (888)
T ss_pred cCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE-EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce
Confidence 99987 689999999999999864422111 0111111122 234578999999999999999999999999999999
Q ss_pred eeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEE
Q 002782 527 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (882)
Q Consensus 527 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 606 (882)
+...++.||.-||.|+..|||+++++|||.|.+|++|-++-|.|.++|.+|..+|+++.|.|....++++|.||.|+-||
T Consensus 541 KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 541 KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHH----HHHhhhhHHHHh-c-------------
Q 002782 607 VRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER----EEAFRKEEEAVL-R------------- 668 (882)
Q Consensus 607 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~~-~------------- 668 (882)
-...++++.+.+|...|||++.+|+|.++++++.|.+|++|....+... ++.+++++.+.+ .
T Consensus 621 g~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lEeekE~ErEe~yE~l~~~~e~~~~~~~~~g 700 (888)
T KOG0306|consen 621 GEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILEEEKEGEREEEYETLLASEEVVAGDGSADG 700 (888)
T ss_pred hhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeeehhhhhhhHHHHHHhhhhcccccCCCcccc
Confidence 9999999999999999999999999999999999999999998874321 111111111100 0
Q ss_pred ------cchHHHhhhccchHHHHHHHhh---------cCCch-hHHHHH--------HHHHhcchhHHHHHHHHhccCHH
Q 002782 669 ------GQELENAVLDADYTKAIQVAFE---------LRRPH-KLFELF--------ASVCRKREAELQIEKALHALGKE 724 (882)
Q Consensus 669 ------~~~~~~~~~~~~~~~a~~~a~~---------~~~~~-~~~~~~--------~~~~~~~~~~~~l~~~~~~l~~~ 724 (882)
.+.++.....++..+|+.++.+ +..|+ .++..+ ... ...+...+|+.+|.-||++
T Consensus 701 ~~~~~skkTieSvk~aE~i~ea~di~~~e~~~~ee~~~g~P~npll~a~~ks~e~yi~dt-l~~Ir~S~Ld~aLlllPfS 779 (888)
T KOG0306|consen 701 DAGVASKKTIESVKSAERILEALDIGREELTQLEEYSPGHPHNPLLNAYNKSPEKYIVDT-LMKIRASELDDALLLLPFS 779 (888)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCCcHHHHHhcCCHHHHHHHH-HHhcchhhhhhhheeccHH
Confidence 0222233333333344432221 11132 111111 111 1123456899999999999
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHhccCCcchhhcccChHhHHhhhccchhhHHHHHHHHHhhhhhhheeccccC
Q 002782 725 EIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMS 804 (882)
Q Consensus 725 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 804 (882)
++..+|+++..|+.++...+++.+++.+|+++|. .++...+++++.|+.+...+++..+ |....++||+++++
T Consensus 780 ~V~~vl~~i~~~~q~~~~veLv~rv~~fL~rih~-~~it~~~~~kp~l~~i~s~l~~~v~------q~rdv~G~NlagL~ 852 (888)
T KOG0306|consen 780 YVLDVLKFIDECIQRKSKVELVCRVLFFLLRIHH-KQITAHKNMKPLLEKIKSKLREIVE------QLRDVLGFNLAGLS 852 (888)
T ss_pred HHHHHHHHHHHHHcCCCcceeEeeeeeehhhhhh-hhhccccchHHHHHHHHHHHHHHHH------HhhhhhhhhhhHHH
Confidence 9999999999999999999999999999999998 8999999999999999998886555 45555599999999
Q ss_pred CCCC
Q 002782 805 VIEP 808 (882)
Q Consensus 805 ~~~~ 808 (882)
++..
T Consensus 853 ~l~~ 856 (888)
T KOG0306|consen 853 LLKQ 856 (888)
T ss_pred HHHH
Confidence 9874
No 3
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.9e-72 Score=573.18 Aligned_cols=738 Identities=21% Similarity=0.327 Sum_probs=594.3
Q ss_pred cccccccccccccccCCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 002782 7 KKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86 (882)
Q Consensus 7 ~~~~~~~~~~~~~y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~i 86 (882)
|..|+.++.+...|.+|.++|++||.-++.+.++.|.++|+.+++-....-.+...|+++++||+|.+|++....|...+
T Consensus 2 k~efrfsNllGTvyr~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~l 81 (893)
T KOG0291|consen 2 KTEFRFSNLLGTVYRAGNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALL 81 (893)
T ss_pred ccccchhhcccceeecCcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEE
Confidence 67899999999999999999999999999999999999999988765444456789999999999999999999999999
Q ss_pred EECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--------EEEEeecCCCcEEEEEEecCCCc
Q 002782 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--------CTHYFKGHKGVVSSILFHPDTDK 158 (882)
Q Consensus 87 wd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~--------~~~~~~~h~~~V~~l~f~~~~~~ 158 (882)
-++.....++.++ -+.+|.++.|||+|+++|.|.. +.+.||...... ...++.+|...|+++.|+.|.+.
T Consensus 82 vs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~ 159 (893)
T KOG0291|consen 82 VSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRL 159 (893)
T ss_pred EecccceeeEEEe-ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCce
Confidence 9999888888877 4689999999999999998764 789999875432 23456789999999999998654
Q ss_pred cEEEEEeCCCcEEEEECCCCeE--EEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCce--eeeeecCcceeeE
Q 002782 159 SLLFSGSDDATVRVWDLLAKKC--VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS--CKLTVPTYEMVEA 234 (882)
Q Consensus 159 ~~l~sgs~dg~I~vwd~~~~~~--~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~ 234 (882)
|++|+.|..+++|++...+. ...+.+|.+.|.+.-|..+...+++.+.||.+.+|.....- ....-...+....
T Consensus 160 --l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d 237 (893)
T KOG0291|consen 160 --LVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDD 237 (893)
T ss_pred --EEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccc
Confidence 99999999999999987665 66789999999999999999999999999999999876431 1000000000000
Q ss_pred EEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCe-EEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEc
Q 002782 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI-VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL 313 (882)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (882)
. ....-++... -.+|... ...-.......+++..++
T Consensus 238 ~------------------------------~~~~~~Eek~~~~~~~k~-------------~k~~ln~~~~kvtaa~fH 274 (893)
T KOG0291|consen 238 E------------------------------EMDEDGEEKTHKIFWYKT-------------KKHYLNQNSSKVTAAAFH 274 (893)
T ss_pred c------------------------------cccccchhhhcceEEEEE-------------Eeeeecccccceeeeecc
Confidence 0 0000000000 0011100 011111222567888899
Q ss_pred cCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEc-CCcEEEEeCCCceeeeee
Q 002782 314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN-IEQVQVYDLSSMSCSYVL 392 (882)
Q Consensus 314 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~ 392 (882)
+....++++-..|.+.+|.++ .+.....+.-....|..+.|+. .+.++|.|+. -|++.+|+..+...+...
T Consensus 275 ~~t~~lvvgFssG~f~LyelP-------~f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQ 346 (893)
T KOG0291|consen 275 KGTNLLVVGFSSGEFGLYELP-------DFNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQ 346 (893)
T ss_pred CCceEEEEEecCCeeEEEecC-------CceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeec
Confidence 999999999999999999988 5566667777778899999876 6778888766 489999999999999999
Q ss_pred eCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecC
Q 002782 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (882)
Q Consensus 393 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~ 472 (882)
++|...+.+++ ++|||.. +++|+.||.|++||..++-|..++..|++.|+.+.|+..++ .+++.+-||+|+.||+.
T Consensus 347 QgH~~~i~~l~--YSpDgq~-iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 347 QGHSDRITSLA--YSPDGQL-IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLK 422 (893)
T ss_pred cccccceeeEE--ECCCCcE-EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeec
Confidence 99999999999 9999998 99999999999999999999999999999999999999977 89999999999999997
Q ss_pred CCCCCCCCcccccchhhh-hhcCCCeeEEEEcCCCcEEEEEcCCC-cEEEEeCCCceeEEEEecccCceEEEEEcCCCCE
Q 002782 473 GLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 550 (882)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~la~~s~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 550 (882)
.... ..++ ........|++..|.|.+++.|+.|. .|.+|++++|+.+-.+.||.+||.+++|+|++..
T Consensus 423 RYrN----------fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 423 RYRN----------FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSL 492 (893)
T ss_pred ccce----------eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCe
Confidence 5421 1111 12233567999999999999999887 5999999999999999999999999999999999
Q ss_pred EEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEecc-----------
Q 002782 551 VITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----------- 618 (882)
Q Consensus 551 l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------- 618 (882)
|+++|.|.+||+||+-.. ..+.+++ +...++.++|.|+|+.|+++..||.|.+||++.+..+.++++
T Consensus 493 LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~ 571 (893)
T KOG0291|consen 493 LASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKET 571 (893)
T ss_pred EEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccccc
Confidence 999999999999998655 3445554 778899999999999999999999999999988776655442
Q ss_pred ---------CCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHHHHHh----------------hh-----------h
Q 002782 619 ---------HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAF----------------RK-----------E 662 (882)
Q Consensus 619 ---------h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~----------------~~-----------~ 662 (882)
.....+.+++|+||.+|++||....|++|++.++...+..+ ++ .
T Consensus 572 D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~ 651 (893)
T KOG0291|consen 572 DRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDT 651 (893)
T ss_pred ceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccc
Confidence 12467889999999999999999999999988764322100 00 0
Q ss_pred HHHHh-------------------------------------------------------------------ccchHHHh
Q 002782 663 EEAVL-------------------------------------------------------------------RGQELENA 675 (882)
Q Consensus 663 ~~~~~-------------------------------------------------------------------~~~~~~~~ 675 (882)
++..+ ....+..+
T Consensus 652 e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~~FDPf~LD~~vTPe~v~~a 731 (893)
T KOG0291|consen 652 EESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTILFDPFDLDVDVTPESVREA 731 (893)
T ss_pred ccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCceEEcccccccccCHHHHHHH
Confidence 00000 00113367
Q ss_pred hhccchHHHHHHHhhcCCchhHHHHHHHHHhcchhHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHhc
Q 002782 676 VLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFN 755 (882)
Q Consensus 676 ~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 755 (882)
+.+.+|.+|+.++++++++..+.+++++++.. .++.+...||..++++||++|.+...+++|.+++..|++.||.
T Consensus 732 l~~qey~~AlvmslRLNe~~lI~evlesvp~~-----~Ie~V~~~Lp~~y~erll~~l~~~l~~s~HieF~l~W~~~il~ 806 (893)
T KOG0291|consen 732 LREQEYLKALVMSLRLNEYKLIKEVLESVPIK-----DIELVASSLPTAYLERLLKALSRFLENSPHIEFYLRWLRAILT 806 (893)
T ss_pred HhcchHHHHHHHHHhcCHHHHHHHHHHhCChh-----hhhhhhhcCcHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 78889999999999999998887888777665 7999999999999999999999999999999999999999999
Q ss_pred cCCcchhhcccChHhHHhhhccchhhHHHHHHHHHhhhhhhheeccccCCCCCchhhhhhhhhccccccccc
Q 002782 756 IHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQ 827 (882)
Q Consensus 756 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (882)
.||........-+.+.|.+|++.+.||.++|.+|+ .+|-++|+++....+++ |.+-.+..++++
T Consensus 807 ~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~------~~Nky~L~~lv~~~~~~--k~~~~~~~~eed 870 (893)
T KOG0291|consen 807 YHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLC------SLNKYTLRYLVSKRQSR--KSAKKPEEEEED 870 (893)
T ss_pred HhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHh------hccHHHHHHHHhhhhhh--cccCCccccccc
Confidence 99954444445577889999999999999999999 88888888876544444 555444444444
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-58 Score=474.83 Aligned_cols=527 Identities=24% Similarity=0.414 Sum_probs=449.4
Q ss_pred ceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecC-CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC
Q 002782 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEG-GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~-~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h 101 (882)
+++++||+++|+++..+ -+++|++++|+.++.++. |+.||.-++|+|.|..||+|+.||.++|||+..+.+.+.|+||
T Consensus 67 a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~ 146 (775)
T KOG0319|consen 67 ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGH 146 (775)
T ss_pred eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCC
Confidence 79999999999999987 799999999999999998 9999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCCE--EEEEeCCCcEEEEECCCCe-EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC
Q 002782 102 DGPAIGMACHPSGGL--LATAGADRKVLVWDVDGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (882)
Q Consensus 102 ~~~V~~l~fs~~~~~--lasg~~dg~v~vwd~~~~~-~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~ 178 (882)
.+.|.++.|+|+-.+ |++|+.|+++++||+.+.. +++.+..|.+.|++++|++|+.. +++++.|..+.+||+.+.
T Consensus 147 gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~--~ls~~RDkvi~vwd~~~~ 224 (775)
T KOG0319|consen 147 GGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE--LLSVGRDKVIIVWDLVQY 224 (775)
T ss_pred CceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce--EEEeccCcEEEEeehhhh
Confidence 999999999997664 8999999999999998554 58888999999999999999766 999999999999999888
Q ss_pred eEEEEecCcccceEEEEEccC-----CCEEEEEeCCCeEEEEecCCceeeeeecCcc--eeeEEEecCCCCCcccccccc
Q 002782 179 KCVATLDKHFSRVTSMAITSD-----GSTLISAGRDKVVNLWDLRDYSCKLTVPTYE--MVEAVCAIPPGSAFDSFLSSY 251 (882)
Q Consensus 179 ~~~~~l~~h~~~v~~l~~s~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 251 (882)
++..+++.. ..+.++.+-++ |.+++++|.+|.+++||..+.++........ .+......+
T Consensus 225 ~~l~~lp~y-e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~------------ 291 (775)
T KOG0319|consen 225 KKLKTLPLY-ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIE------------ 291 (775)
T ss_pred hhhheechh-hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceecc------------
Confidence 777776533 45667777776 6799999999999999999887765443332 111111111
Q ss_pred hhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEE-ccCCCcEEEEEeCCeEEE
Q 002782 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV-LPSNQGLLCVTADQQLLL 330 (882)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~i~~ 330 (882)
....+++...+..+.++|.++..+..+. ......+..+.+ .|+.+.+++.++.+.+++
T Consensus 292 -----------~~~~~l~vtaeQnl~l~d~~~l~i~k~i----------vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 292 -----------SMSQLLLVTAEQNLFLYDEDELTIVKQI----------VGYNDEILDMKFLGPEESHLAVATNSPELRL 350 (775)
T ss_pred -----------ccCceEEEEccceEEEEEccccEEehhh----------cCCchhheeeeecCCccceEEEEeCCCceEE
Confidence 1236778888889999988877554332 222345555554 467788899999999999
Q ss_pred EEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc----eeeeeeeCCCcceEEeeeee
Q 002782 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM----SCSYVLAGHSEIVLCLDTCA 406 (882)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~ 406 (882)
|+..+.. ...+.||.+.|.++.... .+.++++++.|..+++|.++.+ .++....+|+..|.+++ .
T Consensus 351 y~~~~~~--------c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava--~ 419 (775)
T KOG0319|consen 351 YTLPTSY--------CQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA--G 419 (775)
T ss_pred EecCCCc--------eEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee--e
Confidence 9776432 227889999999999433 5589999999999999977443 34556779999999998 6
Q ss_pred ecCCCEEEEEeecCCeEEEEeCCCceEE---------eeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCC
Q 002782 407 LSSGKILIVTGSKDNSVRLWDSESRCCV---------GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477 (882)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~ 477 (882)
+..+..++++++.|+++++|++...+.. .....|...|++++++|+.. ++++||.|++.++|+++..
T Consensus 420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~--- 495 (775)
T KOG0319|consen 420 SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQL--- 495 (775)
T ss_pred cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCc---
Confidence 7777788999999999999998762211 12347999999999999976 9999999999999999844
Q ss_pred CCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCC
Q 002782 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557 (882)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 557 (882)
....++.+|...|.|+.|+|+.+.+||+|.|++|+||.+.++.++.+|.||...|..+.|-.+|..|++++.|
T Consensus 496 -------~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 496 -------RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred -------eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence 2677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (882)
Q Consensus 558 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 608 (882)
|-|++|++++++|+.++.+|.+.|++++-++.+.+++||+.||.|.+|.-.
T Consensus 569 GliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred CcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 999999999999999999999999999999999999999999999999643
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-54 Score=428.30 Aligned_cols=585 Identities=18% Similarity=0.245 Sum_probs=476.3
Q ss_pred CCCCcccccccccccccccccCCceEE--ccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEE
Q 002782 1 MASLPLKKSYGCEPVLQQFYGGGPLVV--SSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS 78 (882)
Q Consensus 1 m~~~~l~~~~~~~~~~~~~y~g~~va~--s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~ 78 (882)
|.++.||+.|++.|+-++-.+ +.+ .|-|..++++++..|.+.+++++.....+..|..+++-..|||.|-|+|+|
T Consensus 1 ms~~~lk~~~~~lPst~Rg~~---~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASG 77 (603)
T KOG0318|consen 1 MSEYELKETFASLPSTERGVP---IIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASG 77 (603)
T ss_pred CchhhhhhhccCCCcccCCcc---eEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeec
Confidence 888999999999998888443 555 577899999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCe--eEEEeecCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeEEEEeecCCCcEEEEEEec
Q 002782 79 GHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGAD--RKVLVWDVDGGFCTHYFKGHKGVVSSILFHP 154 (882)
Q Consensus 79 ~~dg~i~iwd~~~~~--~~~~~~~h~~~V~~l~fs~~~~~lasg~~d--g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~ 154 (882)
...|.|||||....+ +..+++.-.++|..++|++++++++..++. +..+++-+++|..+..+.||...|.++.|-|
T Consensus 78 D~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kp 157 (603)
T KOG0318|consen 78 DVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKP 157 (603)
T ss_pred CCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccC
Confidence 999999999987633 334567778999999999999999987743 3445555557777889999999999999998
Q ss_pred CCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeec----Ccc
Q 002782 155 DTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP----TYE 230 (882)
Q Consensus 155 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~~~ 230 (882)
. +...+++|++|++|.+|+-...+...+++.|..-|.++.|+|||.++++++.||.+.+||-.+++.+..+. +..
T Consensus 158 s-RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkG 236 (603)
T KOG0318|consen 158 S-RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKG 236 (603)
T ss_pred C-CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccc
Confidence 7 55679999999999999988888888999999999999999999999999999999999999999888776 455
Q ss_pred eeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEE
Q 002782 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAA 310 (882)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (882)
.+.++.+.|++. ++++++.|.++++||+.+..+.......... ......+
T Consensus 237 sIfalsWsPDs~-----------------------~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v-------~dqqvG~ 286 (603)
T KOG0318|consen 237 SIFALSWSPDST-----------------------QFLTVSADKTIKIWDVSTNSLVSTWPMGSTV-------EDQQVGC 286 (603)
T ss_pred cEEEEEECCCCc-----------------------eEEEecCCceEEEEEeeccceEEEeecCCch-------hceEEEE
Confidence 788999999986 8999999999999999998554433222110 0111222
Q ss_pred EEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeee
Q 002782 311 TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY 390 (882)
Q Consensus 311 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 390 (882)
.+ .+..|++++.+|.+.+++.... .....+.||+..|.++..++ ++.++.+|+.||.|.-|+..++..-+
T Consensus 287 lW--qkd~lItVSl~G~in~ln~~d~-------~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 287 LW--QKDHLITVSLSGTINYLNPSDP-------SVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred EE--eCCeEEEEEcCcEEEEecccCC-------ChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccc
Confidence 22 3888999999999999998743 35678899999999999988 55999999999999999999988775
Q ss_pred ee-eCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEee--eecccccEEEEEEccCCCcEEEEeeCCCeEE
Q 002782 391 VL-AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV--GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK 467 (882)
Q Consensus 391 ~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~ 467 (882)
.. .+|...|.+++ ....+. +++.+.|.++++.++..+..... .... ....+++..+++. +++..+.++.+.
T Consensus 357 ~~g~~h~nqI~~~~--~~~~~~--~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg-~QP~~lav~~d~~-~avv~~~~~iv~ 430 (603)
T KOG0318|consen 357 LAGKGHTNQIKGMA--ASESGE--LFTIGWDDTLRVISLKDNGYTKSEVVKLG-SQPKGLAVLSDGG-TAVVACISDIVL 430 (603)
T ss_pred cccccccceEEEEe--ecCCCc--EEEEecCCeEEEEecccCcccccceeecC-CCceeEEEcCCCC-EEEEEecCcEEE
Confidence 54 78999999997 444343 78889999999998765432221 1211 2233788888765 455555555444
Q ss_pred EEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCce--eEEEEecccCceEEEEEc
Q 002782 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKRGIWSVEFS 545 (882)
Q Consensus 468 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~s 545 (882)
+-+..... .....-...+++++|++..+|+|+.|+.|+||.+..+. ....+..|..+|++++||
T Consensus 431 l~~~~~~~--------------~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 431 LQDQTKVS--------------SIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS 496 (603)
T ss_pred EecCCcce--------------eeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence 44443221 11123456899999999999999999999999998754 334566799999999999
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCceeeEe-ecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe-eEEEeccCCCce
Q 002782 546 PVDQVVITASGDKTIKIWSISDGSCLKTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-CIATYDKHEDKI 623 (882)
Q Consensus 546 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v 623 (882)
||+.+||++...+.+.+||+.+.+..... --|...|.+++|+|+..++++|+-|-.|.||+++... .+.....|...|
T Consensus 497 pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gV 576 (603)
T KOG0318|consen 497 PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGV 576 (603)
T ss_pred CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCc
Confidence 99999999999999999999988774333 3399999999999999999999999999999998754 355556899899
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782 624 WALAVGKKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 624 ~~l~~s~~~~~l~s~~~dg~i~iw~~~ 650 (882)
+.+.|- |...+++.|.|..|++|.+.
T Consensus 577 n~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 577 NSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eeEEEe-cCceEEeccCcceeEEeccc
Confidence 999997 55679999999999999864
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-50 Score=414.33 Aligned_cols=545 Identities=19% Similarity=0.296 Sum_probs=435.7
Q ss_pred ccccccccccccccccCCceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcE
Q 002782 6 LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREI 84 (882)
Q Consensus 6 l~~~~~~~~~~~~~y~g~~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i 84 (882)
|+++-...-.++.-|+-..+++||||.++++.... ...+.++.....++.+. -..+|.|+.|||||+++|+|.. +.+
T Consensus 42 LknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~g-n~l 119 (893)
T KOG0291|consen 42 LKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCG-NLL 119 (893)
T ss_pred ccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcEEEEEec-cee
Confidence 44433334445666666689999999988877765 66777777777777665 3578999999999999988865 589
Q ss_pred EEEECCC--------CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEeecCCCcEEEEEEec
Q 002782 85 RVWDLST--------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC--THYFKGHKGVVSSILFHP 154 (882)
Q Consensus 85 ~iwd~~~--------~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~--~~~~~~h~~~V~~l~f~~ 154 (882)
.||.... ....+++.+|-..|+++.|+.|.++|++|+.|.++++|+++..+. .+.+.+|...|.++-|..
T Consensus 120 qiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~ 199 (893)
T KOG0291|consen 120 QIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA 199 (893)
T ss_pred EEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc
Confidence 9998653 345677889999999999999999999999999999999977655 677889999999999998
Q ss_pred CCCccEEEEEeCCCcEEEEECCC-----------------------CeE-----------EEEecCcccceEEEEEccCC
Q 002782 155 DTDKSLLFSGSDDATVRVWDLLA-----------------------KKC-----------VATLDKHFSRVTSMAITSDG 200 (882)
Q Consensus 155 ~~~~~~l~sgs~dg~I~vwd~~~-----------------------~~~-----------~~~l~~h~~~v~~l~~s~~~ 200 (882)
+... +++.+.||.+.+|.... ++. ..-+......|++.+|++..
T Consensus 200 ~~~~--l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t 277 (893)
T KOG0291|consen 200 NSLD--LYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT 277 (893)
T ss_pred Ccce--EEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc
Confidence 7666 99999999999997651 111 11122233689999999999
Q ss_pred CEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEE
Q 002782 201 STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280 (882)
Q Consensus 201 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~ 280 (882)
..|+++-..|...++.+....++..+...+
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~-------------------------------------------------- 307 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISD-------------------------------------------------- 307 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeeccc--------------------------------------------------
Confidence 999999999999999998888777665542
Q ss_pred CCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeC-CeEEEEEecccccccceeeeeeeecccCCceEEE
Q 002782 281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD-QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 359 (882)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 359 (882)
..+..+++...+..++.++.. |.+.+|+.... .......||...+.++
T Consensus 308 ------------------------~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-------sYVlKQQgH~~~i~~l 356 (893)
T KOG0291|consen 308 ------------------------QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-------SYVLKQQGHSDRITSL 356 (893)
T ss_pred ------------------------ceeeEEEecccCCEEEEcCCccceEEEEEeecc-------ceeeeccccccceeeE
Confidence 223333444444445444443 55556655422 2334567899999999
Q ss_pred EEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeec
Q 002782 360 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG 439 (882)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 439 (882)
+|+| +++++++|+.||.|++||..++-|..++..|+..|+.+. +...++. +++.+-||+|+.||+...+..+++..
T Consensus 357 ~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~--f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~ 432 (893)
T KOG0291|consen 357 AYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQ--FTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTS 432 (893)
T ss_pred EECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEE--EEecCCE-EEEeecCCeEEeeeecccceeeeecC
Confidence 9998 899999999999999999999999999999999999998 8888887 99999999999999999999888875
Q ss_pred cc-ccEEEEEEccCCCcEEEEeeCCC-eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCc
Q 002782 440 HM-GAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT 517 (882)
Q Consensus 440 ~~-~~v~~v~~s~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~ 517 (882)
.. -...|++..|.|. ++++|+.|. .|.+|++.++. ...++.+|+++|.+++|+|++..||++|.|++
T Consensus 433 P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGq----------llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 433 PEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQ----------LLDILSGHEGPVSGLSFSPDGSLLASGSWDKT 501 (893)
T ss_pred CCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCe----------eeehhcCCCCcceeeEEccccCeEEeccccce
Confidence 43 4677899999987 677777764 59999998774 67788999999999999999999999999999
Q ss_pred EEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeec--------------------C
Q 002782 518 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG--------------------H 577 (882)
Q Consensus 518 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------h 577 (882)
|++||+-.......--.+...+..++|+|||+.|+++.-||+|.+||+..+..+.++.| .
T Consensus 502 VRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~ 581 (893)
T KOG0291|consen 502 VRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK 581 (893)
T ss_pred EEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence 99999865533333333778899999999999999999999999999988766655442 2
Q ss_pred cCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEecc---------------------------------------
Q 002782 578 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK--------------------------------------- 618 (882)
Q Consensus 578 ~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------------------------------- 618 (882)
....+.+++++||.++++||....|++|++.++-.++.++-
T Consensus 582 ~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~ 661 (893)
T KOG0291|consen 582 GKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRID 661 (893)
T ss_pred CCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccccccccccccc
Confidence 34688999999999999999999999999987655543310
Q ss_pred -----------------CCCceEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782 619 -----------------HEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (882)
Q Consensus 619 -----------------h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~ 651 (882)
+.-.|.++.|+|.|+.++.++..| +.||.+.+
T Consensus 662 ~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 662 IALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred ccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccc-eEEEecCC
Confidence 122478899999999999999998 57777643
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-54 Score=410.34 Aligned_cols=336 Identities=29% Similarity=0.507 Sum_probs=308.2
Q ss_pred eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEE
Q 002782 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (882)
Q Consensus 93 ~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~v 172 (882)
++..++.||..+|.|++|+|+|.+||+|+.|.++++||+.+..+.++.++|...|.|++|+||+.. |++|+.||+|++
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~--iASG~~dg~I~l 183 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKK--IASGSKDGSIRL 183 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcch--hhccccCCeEEE
Confidence 455678899999999999999999999999999999999999999999999999999999999987 999999999999
Q ss_pred EECCCCeEE-EEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccc
Q 002782 173 WDLLAKKCV-ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 251 (882)
Q Consensus 173 wd~~~~~~~-~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (882)
||..+|+++ ..+.+|...|++++|.|-.
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~h--------------------------------------------------- 212 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLH--------------------------------------------------- 212 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccc---------------------------------------------------
Confidence 999998866 5789999999999886531
Q ss_pred hhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEE
Q 002782 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (882)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 331 (882)
T Consensus 213 -------------------------------------------------------------------------------- 212 (480)
T KOG0271|consen 213 -------------------------------------------------------------------------------- 212 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCC
Q 002782 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (882)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 411 (882)
..|+.+
T Consensus 213 --------------------------------------------------------------------------l~p~~r 218 (480)
T KOG0271|consen 213 --------------------------------------------------------------------------LVPPCR 218 (480)
T ss_pred --------------------------------------------------------------------------cCCCcc
Confidence 223444
Q ss_pred EEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhh
Q 002782 412 ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (882)
Q Consensus 412 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 491 (882)
. ++++++||.++|||+..+.++..+.+|+.+|+|+.|--+| ++++|+.|++|++|+...+. ....+.
T Consensus 219 ~-las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~----------~~r~lk 285 (480)
T KOG0271|consen 219 R-LASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGK----------LCRELK 285 (480)
T ss_pred c-eecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchh----------HHHhhc
Confidence 4 9999999999999999999999999999999999998654 89999999999999987542 677889
Q ss_pred hcCCCeeEEEEc-----------CCC-------------------------cEEEEEcCCCcEEEEeCCCc-eeEEEEec
Q 002782 492 AHGKDINSLAVA-----------PND-------------------------SLVCTGSQDRTACVWRLPDL-VSVVTFRG 534 (882)
Q Consensus 492 ~~~~~i~~~~~s-----------~~~-------------------------~~la~~s~dg~i~iwd~~~~-~~~~~~~~ 534 (882)
+|...|+.++.+ |.+ ..+++|+.|.++.+|+.... +++..+.+
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg 365 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG 365 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence 999999999887 223 35999999999999997654 57888999
Q ss_pred ccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEE
Q 002782 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614 (882)
Q Consensus 535 h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~ 614 (882)
|..-|..+.||||++++|+++-|..|++||..+|+.+.+|+||-+.|..++|+.|.++|++|+.|.++++|++++.+...
T Consensus 366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782 615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (882)
Q Consensus 615 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~ 648 (882)
.+.+|.++|.++.|+|||..+++|+.|..+++|.
T Consensus 446 DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 446 DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999995
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-54 Score=407.36 Aligned_cols=368 Identities=26% Similarity=0.436 Sum_probs=308.0
Q ss_pred eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (882)
Q Consensus 53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~ 132 (882)
-..+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||..
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEE-EEeecCCCcEEEEEEecC---CCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeC
Q 002782 133 GGFCT-HYFKGHKGVVSSILFHPD---TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (882)
Q Consensus 133 ~~~~~-~~~~~h~~~V~~l~f~~~---~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~ 208 (882)
+|.++ ..+++|...|++++|.|- ....+|++++.||.|+|||+..+.++..+.+|..+|+|+.|-.+| ++++++.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~ 266 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQ 266 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCC
Confidence 88765 568999999999999762 233469999999999999999999999999999999999997665 7889998
Q ss_pred CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeee
Q 002782 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (882)
Q Consensus 209 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~ 288 (882)
|++|++|+...+
T Consensus 267 DrtIkvw~a~dG-------------------------------------------------------------------- 278 (480)
T KOG0271|consen 267 DRTIKVWRALDG-------------------------------------------------------------------- 278 (480)
T ss_pred CceEEEEEccch--------------------------------------------------------------------
Confidence 988888876432
Q ss_pred ecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcE
Q 002782 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (882)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 368 (882)
T Consensus 279 -------------------------------------------------------------------------------- 278 (480)
T KOG0271|consen 279 -------------------------------------------------------------------------------- 278 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEE
Q 002782 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (882)
Q Consensus 369 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~ 448 (882)
.+.+.+.+|...|+.++ .+.+ +.+-+|.-|.+=+-....+ +... .+.. ... +
T Consensus 279 ------------------~~~r~lkGHahwvN~la--lsTd--y~LRtgaf~~t~~~~~~~s-e~~~--~Al~-rY~--~ 330 (480)
T KOG0271|consen 279 ------------------KLCRELKGHAHWVNHLA--LSTD--YVLRTGAFDHTGRKPKSFS-EEQK--KALE-RYE--A 330 (480)
T ss_pred ------------------hHHHhhcccchheeeee--ccch--hhhhccccccccccCCChH-HHHH--HHHH-HHH--H
Confidence 23336778888888886 3333 3355554432211111000 0000 0000 000 1
Q ss_pred EccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCcee
Q 002782 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (882)
Q Consensus 449 ~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~ 528 (882)
..+++...+++|+.|.++.+|+-... .++.....+|..-|+.+.||||++++|++|-|+.|++||..+|+.
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~---------kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKS---------KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred hhccCcceeEEecCCceEEEeccccc---------ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 12233357999999999999996533 225566788999999999999999999999999999999999999
Q ss_pred EEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEE
Q 002782 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (882)
Q Consensus 529 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 606 (882)
+.+|+||-.+|..++|+.|.++|++|+.|.++++|++++.+....+.||...|.++.|+|||..+++|+.|..+++|.
T Consensus 402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-50 Score=415.29 Aligned_cols=556 Identities=22% Similarity=0.317 Sum_probs=433.2
Q ss_pred CceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC
Q 002782 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101 (882)
Q Consensus 23 ~~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h 101 (882)
.++.-+||.-+||+|..+ .|+||+..++....++.||...|+++.|+..|..||+|+.|+.|.+||+-...-+..++||
T Consensus 69 t~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GH 148 (888)
T KOG0306|consen 69 TCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGH 148 (888)
T ss_pred EEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecc
Confidence 367778999999999976 8999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC---
Q 002782 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--- 178 (882)
Q Consensus 102 ~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~--- 178 (882)
+..|+.+-|..+.++|++.+.|+.|++||+++..|..+.-.|.+.|+.+++.+ + ++++++.|+.+++|++...
T Consensus 149 kd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~--~lvt~~~dse~~v~~L~~~~D~ 224 (888)
T KOG0306|consen 149 KDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--K--LLVTAGTDSELKVWELAFEDDE 224 (888)
T ss_pred hHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--c--eEEEEecCCceEEEEeeccccc
Confidence 99999999999899999999999999999999999999999999999999987 3 4999999999999998211
Q ss_pred ----e-----EEEE-ecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCc------ceee----EEEec
Q 002782 179 ----K-----CVAT-LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY------EMVE----AVCAI 238 (882)
Q Consensus 179 ----~-----~~~~-l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~~----~~~~~ 238 (882)
. ...+ .+...+....+...++++++++-+.|..+.++.+.....+...... .... .....
T Consensus 225 ~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~ 304 (888)
T KOG0306|consen 225 KETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVE 304 (888)
T ss_pred ccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchh
Confidence 1 1111 2233445666777888999999999999999998765422211100 0000 00000
Q ss_pred CCCCCcccccccchhhh----hhcc-ccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEc
Q 002782 239 PPGSAFDSFLSSYNQQT----IKKK-RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL 313 (882)
Q Consensus 239 ~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (882)
..-+.....+....... .... ..... ..+..-.+..+.++.++.. .-....+..........+...+.+++++
T Consensus 305 ~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~-~~lv~l~nNtv~~ysl~~s-~~~~p~~~~~~~i~~~GHR~dVRsl~vS 382 (888)
T KOG0306|consen 305 KSLSDEIKRLETIRTSAKIKSFDVTPSGGTE-NTLVLLANNTVEWYSLENS-GKTSPEADRTSNIEIGGHRSDVRSLCVS 382 (888)
T ss_pred hhHHHHHHHHHheechhheeEEEEEecCCcc-eeEEEeecCceEEEEeccC-CCCCccccccceeeeccchhheeEEEee
Confidence 00000000000000000 0000 00011 1111144455555555441 1111222233345566677778888886
Q ss_pred cCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeee
Q 002782 314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA 393 (882)
Q Consensus 314 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 393 (882)
.+. .++...+++.+.+|+.... .+.+.+.. +.+.+..|.| ++.++++|..+|.+.+||+.+...+.+.+
T Consensus 383 ~d~-~~~~Sga~~SikiWn~~t~-------kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~ 451 (888)
T KOG0306|consen 383 SDS-ILLASGAGESIKIWNRDTL-------KCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIR 451 (888)
T ss_pred cCc-eeeeecCCCcEEEEEccCc-------ceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhh
Confidence 654 4555667789999998743 33333332 2677888887 88899999999999999999999999999
Q ss_pred CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC-----ceEEeeee-------cccccEEEEEEccCCCcEEEEee
Q 002782 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-----RCCVGVGT-------GHMGAVGAVAFSKKLQNFLVSGS 461 (882)
Q Consensus 394 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~-------~~~~~v~~v~~s~~~~~~l~s~~ 461 (882)
.|.+.+.+++ ..|++.. +++|+.|.+|++||+.- +.....+. .-...|.|+.+||++. +|+.+-
T Consensus 452 AHdgaIWsi~--~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsL 527 (888)
T KOG0306|consen 452 AHDGAIWSIS--LSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSL 527 (888)
T ss_pred ccccceeeee--ecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEe
Confidence 9999999999 8899998 99999999999998642 21111111 2356899999999988 899999
Q ss_pred CCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEE
Q 002782 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541 (882)
Q Consensus 462 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 541 (882)
-|.+|++|-+++. +....+.+|.-||.|+.+|||+++++|||.|++|++|-++-|.+-..+-+|...|.+
T Consensus 528 LdnTVkVyflDtl----------KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~ 597 (888)
T KOG0306|consen 528 LDNTVKVYFLDTL----------KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS 597 (888)
T ss_pred ccCeEEEEEecce----------eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence 9999999998854 366778899999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCC
Q 002782 542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (882)
Q Consensus 542 l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 609 (882)
+.|-|...++++++.|+.|+-||-...++++++.+|...|++++.+|+|.+++|++.|.+|++|.-..
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998544
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1e-47 Score=379.97 Aligned_cols=529 Identities=20% Similarity=0.259 Sum_probs=417.4
Q ss_pred cccccCC-----ceEEccCCCEEEEEeCC-eEEEEEcCCCc--eeeeecCCCccEEEEEEcCCCCEEEEEeC--CCcEEE
Q 002782 17 QQFYGGG-----PLVVSSDGSFIACACGE-SINIVDLSNAS--IKSTIEGGSDTITALALSPDDKLLFSSGH--SREIRV 86 (882)
Q Consensus 17 ~~~y~g~-----~va~s~dg~~la~~~~~-~I~i~d~~~~~--~~~~l~~~~~~I~~l~~spd~~~las~~~--dg~i~i 86 (882)
...|+.+ ...+||.|-|+|.|... .|+|||....+ +...++.-.++|..++|++|+++|++.+. +...++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 3456665 34589999998888754 89999976533 33456666789999999999999887654 334444
Q ss_pred EECCCCeeEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEe
Q 002782 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (882)
Q Consensus 87 wd~~~~~~~~~~~~h~~~V~~l~fs~~~~-~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs 165 (882)
+-+.+|..+..+.||...|.+++|-|... ++++|+.|++|.+|+=.--+...+++.|..-|.++.|+||+.. +++.+
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~--Fat~g 209 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSR--FATAG 209 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCe--EEEec
Confidence 44458889999999999999999999876 5999999999999997766767788899999999999999876 99999
Q ss_pred CCCcEEEEECCCCeEEEEec---CcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeE----EEec
Q 002782 166 DDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEA----VCAI 238 (882)
Q Consensus 166 ~dg~I~vwd~~~~~~~~~l~---~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~ 238 (882)
.||.|.+||-.+++.+..+. +|.+.|.+++|+||++.+++++.|.++++||+.+.+++++++....++. +.+.
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq 289 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ 289 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence 99999999999999999997 8999999999999999999999999999999999999999887665332 2222
Q ss_pred CCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCc
Q 002782 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG 318 (882)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (882)
..++++.+.+|.+.+++...... ......+...++++..++++..
T Consensus 290 -------------------------kd~lItVSl~G~in~ln~~d~~~----------~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 290 -------------------------KDHLITVSLSGTINYLNPSDPSV----------LKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred -------------------------CCeEEEEEcCcEEEEecccCCCh----------hheecccccceeEEEEcCCCCE
Confidence 24799999999999999876632 1223456789999999999999
Q ss_pred EEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeee--eeCCC
Q 002782 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV--LAGHS 396 (882)
Q Consensus 319 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--~~~~~ 396 (882)
++.++.||.|.-|+....... ...-.+|...|..++.. +...+.+.+.|..+++.++........ .....
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~------~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~ 406 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSD------RLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS 406 (603)
T ss_pred EEeeccCceEEEEecCCcccc------ccccccccceEEEEeec--CCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence 999999999999998754321 11225688888888875 335788888889999998864433222 12222
Q ss_pred cceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCC
Q 002782 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (882)
Q Consensus 397 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~ 476 (882)
.+. +++ ..+++.. ++..+.++.+.+-|...-..+. -.-...+++++|++. .++.|++|+.|++|.+....
T Consensus 407 QP~-~la--v~~d~~~-avv~~~~~iv~l~~~~~~~~~~----~~y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~- 476 (603)
T KOG0318|consen 407 QPK-GLA--VLSDGGT-AVVACISDIVLLQDQTKVSSIP----IGYESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDE- 476 (603)
T ss_pred Cce-eEE--EcCCCCE-EEEEecCcEEEEecCCcceeec----cccccceEEEcCCCC-EEEEecccceEEEEEecCCc-
Confidence 222 554 6677766 4444444444333333222111 234567899999987 79999999999999998653
Q ss_pred CCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEE-ecccCceEEEEEcCCCCEEEEee
Q 002782 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITAS 555 (882)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~ 555 (882)
.........|..+|+++++|||+.+||++...+.+.+||+.+.+..... .-|...|.+++|+|+..++|||+
T Consensus 477 -------l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGS 549 (603)
T KOG0318|consen 477 -------LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGS 549 (603)
T ss_pred -------ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecc
Confidence 2234455679999999999999999999999999999999988764433 34999999999999999999999
Q ss_pred CCCcEEEEecCCCc-eeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782 556 GDKTIKIWSISDGS-CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (882)
Q Consensus 556 ~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 608 (882)
-|..|.||+++... .+.....|...|+.+.|.. ...+++.+.|..|++|++.
T Consensus 550 lDt~Viiysv~kP~~~i~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 550 LDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccceEEEEEccChhhheEeccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence 99999999998763 3455567999999999974 4689999999999999873
No 11
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-46 Score=384.21 Aligned_cols=562 Identities=16% Similarity=0.234 Sum_probs=433.3
Q ss_pred cCCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEe
Q 002782 21 GGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG--HSREIRVWDLSTLKCLRSW 98 (882)
Q Consensus 21 ~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~--~dg~i~iwd~~~~~~~~~~ 98 (882)
++..++.+|-..++|+..+-.|.+||+...++-+.+..+..+++|+|||++|+|+|+|- ....+++|++.....+..|
T Consensus 39 ~~~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEf 118 (1080)
T KOG1408|consen 39 NANGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEF 118 (1080)
T ss_pred cCCcccccccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhh
Confidence 44589999999999999999999999999998888889999999999999999999984 7788999999999999999
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC
Q 002782 99 KGHDGPAIGMACHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (882)
Q Consensus 99 ~~h~~~V~~l~fs~~~~~lasg~--~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~ 176 (882)
..|+-.|+|++|+|.++|+++.+ .|-.|.+|||........- .-...|..++|+.|+.+ +++.+. ..|++|.++
T Consensus 119 vdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fsEdgSY--fvT~gn-rHvk~wyl~ 194 (1080)
T KOG1408|consen 119 VDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFSEDGSY--FVTSGN-RHVKLWYLQ 194 (1080)
T ss_pred hhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEccCCce--eeeeee-eeEEEEEee
Confidence 99999999999999999999877 4567889998755433222 24577999999998875 777654 669999987
Q ss_pred CCeEEE-------------------------------------EecCc-----------------ccceEEEEEccCCCE
Q 002782 177 AKKCVA-------------------------------------TLDKH-----------------FSRVTSMAITSDGST 202 (882)
Q Consensus 177 ~~~~~~-------------------------------------~l~~h-----------------~~~v~~l~~s~~~~~ 202 (882)
.++... +-.+| .....|+++ ..++
T Consensus 195 ~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~ 272 (1080)
T KOG1408|consen 195 IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRL 272 (1080)
T ss_pred ccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecce
Confidence 654110 00111 011223333 4568
Q ss_pred EEEEeCCCeEEEEecCCceeeeeecCcceeeEEE--ecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEE
Q 002782 203 LISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC--AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280 (882)
Q Consensus 203 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~ 280 (882)
+++|+.+|.|++|+-.+.....++|.......-. ..... .+..
T Consensus 273 I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~------------------------~~~s----------- 317 (1080)
T KOG1408|consen 273 IACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPE------------------------PKNS----------- 317 (1080)
T ss_pred EEEeeccceeeecCcchhhhccccccccccccchhhccccc------------------------cccc-----------
Confidence 9999999999999998877776666543211000 00000 0000
Q ss_pred CCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEE
Q 002782 281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 360 (882)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 360 (882)
......-....++.|.+....+.++..|..+++|++..... .........|...|.++.
T Consensus 318 -----------------~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k----vgk~~s~lyHS~ciW~Ve 376 (1080)
T KOG1408|consen 318 -----------------ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK----VGKCSSMLYHSACIWDVE 376 (1080)
T ss_pred -----------------ccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc----ccceeeeeeccceeeeec
Confidence 00001113346677888899999999999999999876542 223344555666666665
Q ss_pred EeCC----------CCcEEEEEEcCCcEEEEeCCCceeeeee-------------------------------------e
Q 002782 361 FLGE----------EEQYLAVATNIEQVQVYDLSSMSCSYVL-------------------------------------A 393 (882)
Q Consensus 361 ~~~~----------~~~~l~~~~~~~~i~i~d~~~~~~~~~~-------------------------------------~ 393 (882)
-.|- -...+.+++.|++|++|++..+..-..+ .
T Consensus 377 ~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~ 456 (1080)
T KOG1408|consen 377 NLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTC 456 (1080)
T ss_pred cccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhc
Confidence 5441 1245899999999999998752111000 0
Q ss_pred CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccC--CCcEEEEeeCCCeEEEEec
Q 002782 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHTIKVWSF 471 (882)
Q Consensus 394 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~--~~~~l~s~~~dg~i~~wd~ 471 (882)
+....+.++. .+|++++ |++|..-|++++|++..-+.+....+|...|.|+.++.. +..+|++++.|.-|.+||+
T Consensus 457 d~r~G~R~~~--vSp~gqh-LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 457 DSRFGFRALA--VSPDGQH-LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred CcccceEEEE--ECCCcce-ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence 1223467777 8999998 999999999999999999888899999999999999842 3348999999999999998
Q ss_pred CCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC--cEEEEEcCCCcEEEEeCCCceeEEEEec-----ccCceEEEEE
Q 002782 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRG-----HKRGIWSVEF 544 (882)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~la~~s~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~ 544 (882)
... .....++.+|...|+++.|.-+| ..+++++.|+.|.+--.........+.. .+..+..++.
T Consensus 534 ~rn---------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 534 KRN---------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV 604 (1080)
T ss_pred ccc---------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence 743 34677889999999999999887 7788888898775433221111112221 2346889999
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCceeeEeec---CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCC
Q 002782 545 SPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED 621 (882)
Q Consensus 545 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~ 621 (882)
.|..+++++++.|..|+||++.+|+..+.|++ |.+....+...|.|.||++.+.|.++.++|..+|+|+.+..+|..
T Consensus 605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE 684 (1080)
T KOG1408|consen 605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE 684 (1080)
T ss_pred CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch
Confidence 99999999999999999999999999999986 667888999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHHH
Q 002782 622 KIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (882)
Q Consensus 622 ~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 656 (882)
.|+.+.|++|.+.|++.+.||.|.||.+.......
T Consensus 685 ~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mii~ 719 (1080)
T KOG1408|consen 685 AVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMIIR 719 (1080)
T ss_pred heeeeeecccchhheeecCCceEEEEECchhHhHH
Confidence 99999999999999999999999999998765433
No 12
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.2e-43 Score=368.05 Aligned_cols=588 Identities=18% Similarity=0.237 Sum_probs=463.7
Q ss_pred cccccccccccccCCceEEccCCC--EEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 002782 9 SYGCEPVLQQFYGGGPLVVSSDGS--FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86 (882)
Q Consensus 9 ~~~~~~~~~~~y~g~~va~s~dg~--~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~i 86 (882)
-|++.+.+..+-++-++.+..-|+ ++.++.+....+||.++-..+..-+.+.+.|+|++-+.+ ++.+|+. ..|.+
T Consensus 23 iFapfR~lG~vsn~VP~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~--~vy~A~g-~~i~~ 99 (910)
T KOG1539|consen 23 IFAPFRALGYVSNGVPFRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKD--YVYVASG-NKIYA 99 (910)
T ss_pred cccchhhhceecCCCceeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCc--eEEEecC-cEEEE
Confidence 366666666666666777766554 344445669999999998888877788999999987654 4444443 46777
Q ss_pred EECCCC-eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eE----EEEeecCCCcEEEEEEecCCCccE
Q 002782 87 WDLSTL-KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FC----THYFKGHKGVVSSILFHPDTDKSL 160 (882)
Q Consensus 87 wd~~~~-~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~-~~----~~~~~~h~~~V~~l~f~~~~~~~~ 160 (882)
|- -| ...+.+.+|.+.|.-+. +=|.+++++..++.+.||+..++ .. ...++.....|+++ +||..-.+-
T Consensus 100 ~~--rgk~i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNK 174 (910)
T KOG1539|consen 100 YA--RGKHIRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNK 174 (910)
T ss_pred EE--ccceEEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheee
Confidence 75 44 45567788887777764 45778999999999999999874 11 12223323337777 578766667
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCc-ceeeEEEecC
Q 002782 161 LFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIP 239 (882)
Q Consensus 161 l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~ 239 (882)
++.|+.+|.+.+|++.+++.+.+++++.+.|+++.=+|-=..++.|..+|+|.+++++..+.+.++... ..+.++.|-.
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt 254 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT 254 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEecc
Confidence 999999999999999999999999999999999999999899999999999999999999999999886 8899999988
Q ss_pred CCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcE
Q 002782 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319 (882)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (882)
+|. ..+++++..|.+.+||++...+...... .+..++....+.|...-+
T Consensus 255 DG~----------------------p~las~~~~G~m~~wDLe~kkl~~v~~n---------ah~~sv~~~~fl~~epVl 303 (910)
T KOG1539|consen 255 DGN----------------------PLLASGRSNGDMAFWDLEKKKLINVTRN---------AHYGSVTGATFLPGEPVL 303 (910)
T ss_pred CCC----------------------eeEEeccCCceEEEEEcCCCeeeeeeec---------cccCCcccceecCCCceE
Confidence 885 5788899999999999998855433221 223667788888999999
Q ss_pred EEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeee-------
Q 002782 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL------- 392 (882)
Q Consensus 320 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~------- 392 (882)
+....|+.+.+|-...... .....+.-.||..+..+++|....+..+..+..|+.++.+++......+.+
T Consensus 304 ~ta~~DnSlk~~vfD~~dg---~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~ 380 (910)
T KOG1539|consen 304 VTAGADNSLKVWVFDSGDG---VPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKK 380 (910)
T ss_pred eeccCCCceeEEEeeCCCC---cchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccc
Confidence 9999999999988774432 234556677999999999999999999999999999999887432111100
Q ss_pred -----------eCCCcceEEeeeeeec--CCCEEEEEeecCCeEEEEeCCCceEEee-e-----ecccccEEEEEEccCC
Q 002782 393 -----------AGHSEIVLCLDTCALS--SGKILIVTGSKDNSVRLWDSESRCCVGV-G-----TGHMGAVGAVAFSKKL 453 (882)
Q Consensus 393 -----------~~~~~~v~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~-----~~~~~~v~~v~~s~~~ 453 (882)
.-.-.+|..+++.... +-...++..-.+...+.|++.+...-+. + ......+++++.++.|
T Consensus 381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG 460 (910)
T KOG1539|consen 381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG 460 (910)
T ss_pred ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC
Confidence 0112344444411111 1122255555677899999987654222 2 2234789999999998
Q ss_pred CcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEe
Q 002782 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 533 (882)
Q Consensus 454 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~ 533 (882)
+ +.+.|...|+|.+|++..+-. .........|..+|+.++...-++.+++++.+|.+++||.....++..+.
T Consensus 461 N-F~~IG~S~G~Id~fNmQSGi~-------r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 461 N-FVFIGYSKGTIDRFNMQSGIH-------RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred c-eEEEeccCCeEEEEEcccCee-------ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec
Confidence 7 899999999999999987621 11112236799999999999999999999999999999999988777776
Q ss_pred cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782 534 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613 (882)
Q Consensus 534 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~ 613 (882)
-..++.++..+.....++.+..|-.|+++|+.+.+.++.|.||.+.|+.++|||||++|++++.|++|++||+.++.++
T Consensus 533 -l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 533 -LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred -cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 4567888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEeCC-CCEEEEE
Q 002782 614 ATYDKHEDKIWALAVGKKTEMFATGGSD-ALVNLWH 648 (882)
Q Consensus 614 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g~i~iw~ 648 (882)
-.+. -..+..++.|||+|.+|||...| .-|.+|.
T Consensus 612 D~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 612 DGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 8875 57789999999999999999988 6689996
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-43 Score=360.39 Aligned_cols=537 Identities=20% Similarity=0.283 Sum_probs=388.2
Q ss_pred ceEEccCCCEEEEEeCC---eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEEe
Q 002782 24 PLVVSSDGSFIACACGE---SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH--SREIRVWDLSTLKCLRSW 98 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~---~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~--dg~i~iwd~~~~~~~~~~ 98 (882)
+||||++|+|+|+|.-+ .+++|++.....+..|..|.-.|+|++|+|.++|+++.+. |-.|.+|||........-
T Consensus 83 ~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn 162 (1080)
T KOG1408|consen 83 CVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN 162 (1080)
T ss_pred EEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc
Confidence 79999999999999854 6999999999999999999999999999999999997665 557889999765544443
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-------------Ee------------------------e
Q 002782 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-------------YF------------------------K 141 (882)
Q Consensus 99 ~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~-------------~~------------------------~ 141 (882)
+ -...|.+++|+.||.|+++.+. ..|++|.++.++... .+ .
T Consensus 163 k-iss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~q 240 (1080)
T KOG1408|consen 163 K-ISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQ 240 (1080)
T ss_pred c-cceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecc
Confidence 3 3578999999999999999864 889999987654110 00 0
Q ss_pred cC-----------------CCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecC-c----------------
Q 002782 142 GH-----------------KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-H---------------- 187 (882)
Q Consensus 142 ~h-----------------~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~-h---------------- 187 (882)
|| +..-.|++.+. .+++.|+.+|.|++++..+-..+.+++. |
T Consensus 241 GhLvEFSsRRLLDKWVqcRTTnAnCIcVs~----r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~ 316 (1080)
T KOG1408|consen 241 GHLVEFSSRRLLDKWVQCRTTNANCICVSS----RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKN 316 (1080)
T ss_pred cceeeechhhhhhhhhhhhccccceeeeec----ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccc
Confidence 11 11123344432 4699999999999999877654444321 1
Q ss_pred -------ccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeee----ecCcceeeEEEecCCCCCcccccccchhhhh
Q 002782 188 -------FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT----VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 256 (882)
Q Consensus 188 -------~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (882)
.....++.|++....|.+...|..+++||+++-..+.. +-+..-+..+...|-.- ..
T Consensus 317 s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv------~~------ 384 (1080)
T KOG1408|consen 317 SESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNV------HS------ 384 (1080)
T ss_pred cccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccc------cC------
Confidence 11345788999999999999999999999987543322 22222233332222100 00
Q ss_pred hccccccceEEEEEcCCCeEEEEECCCc---eeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEe
Q 002782 257 KKKRRSLEIHFITVGERGIVRMWNADSA---CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT 333 (882)
Q Consensus 257 ~~~~~~~~~~~~~~~~~g~v~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 333 (882)
.......+..|++++.|++||+|+++.. .++.+....... +-....|++..+...
T Consensus 385 ~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l----------------------~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 385 PTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANL----------------------SKIPYEDSTQQIMHD 442 (1080)
T ss_pred cccccCCccceeEecCCCcEEEeecccccccceeecccchhhh----------------------hcCccccCchhhhhh
Confidence 0011123457999999999999999874 222211110000 000011111111000
Q ss_pred cccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEE
Q 002782 334 VEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL 413 (882)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 413 (882)
...+ ..+. ......+....+.+++.+| ++++||.|...|.+++|++...+....+..|...|.|+.+.+-.-++.+
T Consensus 443 ~~~~--~fdk-a~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kL 518 (1080)
T KOG1408|consen 443 ASAG--IFDK-ALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKL 518 (1080)
T ss_pred ccCC--cccc-cchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHh
Confidence 0000 0000 0011122334567777766 8999999999999999999999999999999999999994443445567
Q ss_pred EEEeecCCeEEEEeCCC-ceEEeeeecccccEEEEEEccCC-CcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhh
Q 002782 414 IVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (882)
Q Consensus 414 l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 491 (882)
|++++.|.-|.+||... -.++.++.+|...|+++.|.-.| +..+++++.|+.|.+--...... . ......+..
T Consensus 519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~-g----~~f~r~t~t 593 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS-G----RLFPRHTQT 593 (1080)
T ss_pred hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC-c----eeccccccc
Confidence 99999999999999875 45677889999999999997665 34689999999886643332110 0 111111112
Q ss_pred hcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec---ccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC
Q 002782 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (882)
Q Consensus 492 ~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~ 568 (882)
.....+..+++.|..++++++++|+.|+||++.++++.+.|++ |.+....+...|.|.+|++.+.|+++.++|..+|
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 2234678999999999999999999999999999999999997 5667888999999999999999999999999999
Q ss_pred ceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCC
Q 002782 569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (882)
Q Consensus 569 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 609 (882)
+|+.+..||...|+.+.|++|-+.|++.+.||.|.||.+..
T Consensus 674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999999999999999999999999999999864
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.4e-45 Score=352.24 Aligned_cols=287 Identities=28% Similarity=0.417 Sum_probs=270.7
Q ss_pred eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecC-CCEEEEEeecCCeEEEE
Q 002782 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLW 426 (882)
Q Consensus 348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iw 426 (882)
...|...++..+.|+. ++.++++|+-+|.+++|+..+.....++.+|...+.++. |.|. ....+++|+.||++++|
T Consensus 170 SQ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~--fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAV--FHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred hhccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEE--EccCCCccceeeeccCCceeee
Confidence 3445667777777776 889999999999999999999999999999999999999 8887 34449999999999999
Q ss_pred eCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC
Q 002782 427 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (882)
Q Consensus 427 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (882)
++.+..++..+.+|...|..++|+|+|+ +|++++.|.+-++||+.+.. ......+|...|.+++|.|||
T Consensus 247 ~~~~e~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~----------ElL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 247 KLSQETPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKS----------ELLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred ccCCCcchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccch----------hhHhhcccccccceeEecCCC
Confidence 9999999999999999999999999998 89999999999999998764 556668999999999999999
Q ss_pred cEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEE
Q 002782 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586 (882)
Q Consensus 507 ~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 586 (882)
.++++|+.|..-+|||++++.++..+.+|..+|.+|+|+|+|..|||||.|++++|||++...++.++.+|.+-|+.++|
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~ 395 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKY 395 (459)
T ss_pred ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee-CCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782 587 LT-RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (882)
Q Consensus 587 s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~ 648 (882)
+| .|.+|+|++.|++++||...++.++.++.+|+++|.++..++|+.+++|++.|.++++|.
T Consensus 396 ~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 396 SPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 98 788999999999999999999999999999999999999999999999999999999995
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-43 Score=339.06 Aligned_cols=284 Identities=32% Similarity=0.491 Sum_probs=264.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe
Q 002782 58 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPS--GGLLATAGADRKVLVWDVDGGF 135 (882)
Q Consensus 58 ~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~--~~~lasg~~dg~v~vwd~~~~~ 135 (882)
|.+.+|+.+.||+|++.||||+-+|.+++|+.++...+.+|.||...|.++.|+|. +..||||+.||++++|++++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 56889999999999999999999999999999999999999999999999999997 5689999999999999999999
Q ss_pred EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEE
Q 002782 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215 (882)
Q Consensus 136 ~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 215 (882)
++..+.+|...|..++|+|+|+. |+|++.|.+-++||+.++..+....||...|.+++|.|||..+++||.|..-+||
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~--L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKF--LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred chhhhhcchhhheeeeecCCCce--eeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 99999999999999999998876 9999999999999999999999999999999999999999999999998877777
Q ss_pred ecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCcee
Q 002782 216 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT 295 (882)
Q Consensus 216 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~ 295 (882)
|++++
T Consensus 331 DlRtg--------------------------------------------------------------------------- 335 (459)
T KOG0272|consen 331 DLRTG--------------------------------------------------------------------------- 335 (459)
T ss_pred ecccC---------------------------------------------------------------------------
Confidence 76543
Q ss_pred eeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcC
Q 002782 296 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 375 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 375 (882)
T Consensus 336 -------------------------------------------------------------------------------- 335 (459)
T KOG0272|consen 336 -------------------------------------------------------------------------------- 335 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCc
Q 002782 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 455 (882)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 455 (882)
.++..+.+|..+|..++ |+|+|.. +++|+.|++++|||+.....+.++.+|..-|+.|.|+|....
T Consensus 336 -----------r~im~L~gH~k~I~~V~--fsPNGy~-lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 336 -----------RCIMFLAGHIKEILSVA--FSPNGYH-LATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred -----------cEEEEecccccceeeEe--ECCCceE-EeecCCCCcEEEeeecccccceecccccchhhheEecccCCe
Confidence 34446778889999998 8999987 999999999999999999999999999999999999997777
Q ss_pred EEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEe
Q 002782 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (882)
Q Consensus 456 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd 522 (882)
+|++++.|+++++|...+. .+...+.+|.+.|.+++++||+..+++++.|+++++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~----------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTW----------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCc----------ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999997754 37788899999999999999999999999999999995
No 16
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-40 Score=328.37 Aligned_cols=427 Identities=19% Similarity=0.313 Sum_probs=363.1
Q ss_pred cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (882)
Q Consensus 352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 431 (882)
..+.|.+++|+|....-+++++. -.+.+|+..+......+....+.+.+++ +-.||+. +++|...|.|++||+.+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~--fR~DG~L-laaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVD--FRSDGRL-LAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEE--eecCCeE-EEccCCcCcEEEeccccH
Confidence 45689999999988888888776 7899999999888888888888999998 7799987 999999999999998887
Q ss_pred eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC-CcEEE
Q 002782 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVC 510 (882)
Q Consensus 432 ~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~la 510 (882)
..++.+.+|+.++..+.|+|++...+++|+.|+.+++||+.+.. ....+.+|...|.|.+++|. +.+++
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----------v~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----------VQAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----------EEEEecCCcceeEeeccccCCCeEEE
Confidence 78889999999999999999999899999999999999998652 24456789999999999995 56899
Q ss_pred EEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEe
Q 002782 511 TGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLT 588 (882)
Q Consensus 511 ~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~ 588 (882)
+|+.||.|++||++.. ..+.++. |..+|..+.|-|.|..++++++ ..|+|||+.+| +.+..+..|...|+|+++..
T Consensus 171 tGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred ecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 9999999999999987 5566665 9999999999999999999987 68999999865 45555666999999999999
Q ss_pred CCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHHHHHhhhh------
Q 002782 589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKE------ 662 (882)
Q Consensus 589 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~------ 662 (882)
++..|++++-||.|++||+.+.+.+..+. ..++|.+++++||++.++.|..||.+.+-+...+++........
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s~~~~~r~~r~~~ 327 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPSKEPKRRADRSDG 327 (487)
T ss_pred CCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcccCCCcccccccccccc
Confidence 99999999999999999999999999887 68899999999999999999999998887554443321110000
Q ss_pred --------------------HHHHhccchHHHhhhccchHHHHHHHhh-cCCchhHHHHHHHHHhcchhHHHHHHHHhcc
Q 002782 663 --------------------EEAVLRGQELENAVLDADYTKAIQVAFE-LRRPHKLFELFASVCRKREAELQIEKALHAL 721 (882)
Q Consensus 663 --------------------~~~~~~~~~~~~~~~~~~~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 721 (882)
+..-.+-..++..+.+.+|.+||..+++ ...|..+..++.++ .++..+..||..+
T Consensus 328 ~~v~~r~~~~~~~~ddiv~n~~~r~~L~~~Dk~Lk~F~~kkALd~vl~~~~~pelvvavl~eL----~~Rg~l~~AL~gr 403 (487)
T KOG0310|consen 328 FFVKVRGQNYKGQKDDIVVNEVKRLKLTYFDKRLKQFKHKKALDHVLEPKKDPELVVAVLSEL----VHRGGLRRALAGR 403 (487)
T ss_pred ceEeeeccccccccceeEeccccccCCchHHHHHhhhhHHHHHHHHhcccCChhHHHHHHHHH----HHhhHHHHHhcCc
Confidence 0000123446788899999999999998 66676555555544 3456899999999
Q ss_pred CHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHhccCCcchhhcccChHhHHhhhccchhhHHHHHHHHHhhhhhhheec
Q 002782 722 GKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTL 800 (882)
Q Consensus 722 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 800 (882)
++.++..||.||.+..+..|++.++..|...||.+|++. +...|.+.+.++.|..-.++..+--.+|++..++||...
T Consensus 404 de~eL~~lLnfl~~~l~~~rf~~~L~~~~~~iLd~Y~~~-i~~s~~l~k~i~~L~~~V~~Ev~~q~ellr~~G~ldmL~ 481 (487)
T KOG0310|consen 404 DESELAPLLNFLVKNLTVVRFASILMEVVSVILDLYARD-IEGSPMLAKLIQALRGKVEQEVRVQKELLRLIGMLDMLG 481 (487)
T ss_pred cHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999954 777888999999999999988888888888888888755
No 17
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=325.72 Aligned_cols=534 Identities=19% Similarity=0.278 Sum_probs=406.0
Q ss_pred eEEccCCCEEEEEeCCeEEEEEcCCC-ceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ee----EEEe
Q 002782 25 LVVSSDGSFIACACGESINIVDLSNA-SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL-KC----LRSW 98 (882)
Q Consensus 25 va~s~dg~~la~~~~~~I~i~d~~~~-~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~-~~----~~~~ 98 (882)
.|+..+..+++++.++.|.+|- -| ...+.+.+|...|.-+. |-|.+++++..++.+.||+..++ .. +...
T Consensus 80 ~alas~~~~vy~A~g~~i~~~~--rgk~i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~ 155 (910)
T KOG1539|consen 80 TALASDKDYVYVASGNKIYAYA--RGKHIRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFL 155 (910)
T ss_pred EEEEecCceEEEecCcEEEEEE--ccceEEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceee
Confidence 4566788899999999999986 45 46678888888887665 45889999999999999999874 22 1222
Q ss_pred ecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC
Q 002782 99 KGHDGPAIGMACHPSG--GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (882)
Q Consensus 99 ~~h~~~V~~l~fs~~~--~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~ 176 (882)
+.....|+++ ++|.. +.++.|+.+|.+.+|++.+++.+++++++...|+++.-+|--+ +++.|..+|+|.++++.
T Consensus 156 ~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK 232 (910)
T KOG1539|consen 156 KVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD--VVAIGLENGTVIIFNLK 232 (910)
T ss_pred eccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce--EEEEeccCceEEEEEcc
Confidence 3222337776 46643 4588899999999999999999999999999999999999654 59999999999999999
Q ss_pred CCeEEEEecCcccceEEEEEccCCCEE-EEEeCCCeEEEEecCCceeeeeec--CcceeeEEEecCCCCCcccccccchh
Q 002782 177 AKKCVATLDKHFSRVTSMAITSDGSTL-ISAGRDKVVNLWDLRDYSCKLTVP--TYEMVEAVCAIPPGSAFDSFLSSYNQ 253 (882)
Q Consensus 177 ~~~~~~~l~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (882)
.++.+.+++...+.|++++|..||..+ ++++..|.+.+||++..+...... +...+....+.+.
T Consensus 233 ~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~------------- 299 (910)
T KOG1539|consen 233 FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG------------- 299 (910)
T ss_pred cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC-------------
Confidence 999999998777999999999999865 555666999999999887665443 2234444444443
Q ss_pred hhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEc-cCCCcEEEEEeCCeEEEEE
Q 002782 254 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL-PSNQGLLCVTADQQLLLYT 332 (882)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~i~~~~ 332 (882)
...+++.+.|..+++|=.+++.... ..... ...+..+...+.+. ..+..++....|+.+..++
T Consensus 300 ----------epVl~ta~~DnSlk~~vfD~~dg~p-----R~LR~-R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs 363 (910)
T KOG1539|consen 300 ----------EPVLVTAGADNSLKVWVFDSGDGVP-----RLLRS-RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFS 363 (910)
T ss_pred ----------CceEeeccCCCceeEEEeeCCCCcc-----hheee-ccCCCCCchheeeeccCcEEEEecccCcchhhhh
Confidence 3478999999999998777551100 00000 11222333444444 5566678888888888877
Q ss_pred ecccccccc--e---------eeeeeeecccCCceEEEEEeC----CCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCC-
Q 002782 333 TVEVPEKKM--E---------LILSKRLVGYNEEILDLKFLG----EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS- 396 (882)
Q Consensus 333 ~~~~~~~~~--~---------~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~- 396 (882)
+........ . ........-.-.+|..+++.. ...+.+++.-++...+.|+......-.-.-.+.
T Consensus 364 ~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~ 443 (910)
T KOG1539|consen 364 VISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR 443 (910)
T ss_pred hhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcc
Confidence 655431110 0 000001111224566666643 345677888888899999998765522222222
Q ss_pred ---cceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeee---ecccccEEEEEEccCCCcEEEEeeCCCeEEEEe
Q 002782 397 ---EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (882)
Q Consensus 397 ---~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd 470 (882)
..+.+.++|.++.|+. .+.|...|.|-+|++++|.....+ ..|.++|+.++....++ .+++++.+|.+++||
T Consensus 444 ~~~~~~~~~av~vs~CGNF-~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 444 FKKDDINATAVCVSFCGNF-VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWD 521 (910)
T ss_pred ccccCcceEEEEEeccCce-EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEe
Confidence 4455555558999997 889999999999999999888877 58999999999988766 799999999999999
Q ss_pred cCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCE
Q 002782 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 550 (882)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 550 (882)
+.... ....-.-+..++++..+....++|++..|-.|.++|..+.+.++.|.||...|++++|||||++
T Consensus 522 f~~k~-----------l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 522 FKKKV-----------LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW 590 (910)
T ss_pred cCCcc-----------eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence 98642 1111123456788888888889999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecC-CeEEEEEcC
Q 002782 551 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-GLVKLWTVR 608 (882)
Q Consensus 551 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g~i~iwd~~ 608 (882)
|++++.|++|++||+.++.++..+. -..+++.+.|+|+|.+|+++..| .-|++|.=+
T Consensus 591 lisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 591 LISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 9999999999999999999998886 56788999999999999999998 579999643
No 18
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3e-38 Score=323.20 Aligned_cols=577 Identities=17% Similarity=0.258 Sum_probs=423.8
Q ss_pred ceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCC---EEEEEeCCCcEEEEECCCC--eeEEEe
Q 002782 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDK---LLFSSGHSREIRVWDLSTL--KCLRSW 98 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~---~las~~~dg~i~iwd~~~~--~~~~~~ 98 (882)
...+.| +..+|+|.+..|.+||..+......+.||..+|+|+.+-|+.+ ++++|+.|+.|.+|.++.. ..+.++
T Consensus 19 v~sw~~-~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~ 97 (764)
T KOG1063|consen 19 VSSWGP-GGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI 97 (764)
T ss_pred cccccc-cceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee
Confidence 344544 4478999999999999998888899999999999999999988 8999999999999999843 355667
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCCCc--EEEEEEecCCCccEEEEEeCCCcEEEEE
Q 002782 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--CTHYFKGHKGV--VSSILFHPDTDKSLLFSGSDDATVRVWD 174 (882)
Q Consensus 99 ~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~--~~~~~~~h~~~--V~~l~f~~~~~~~~l~sgs~dg~I~vwd 174 (882)
.+|...+.|+ ...-....+.+.|+.+.+||.+..+ +.+.++...+. ..|+++.|+.+..+++.|+.+..|.++.
T Consensus 98 ~g~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s 175 (764)
T KOG1063|consen 98 QGHCKECVCV--VARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYS 175 (764)
T ss_pred cCcceeEEEE--EeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEec
Confidence 7766655554 4333333334689999999996655 34444432232 3567777876777888999999999997
Q ss_pred CCCC--eEEEEecCcccceEEEEEccCCC---EEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccc
Q 002782 175 LLAK--KCVATLDKHFSRVTSMAITSDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLS 249 (882)
Q Consensus 175 ~~~~--~~~~~l~~h~~~v~~l~~s~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (882)
-.+. +.+..+.||.+.|.+++|...+. +|++++.|..|++|.+.-........... .....++.
T Consensus 176 ~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~---~~t~~~~~-------- 244 (764)
T KOG1063|consen 176 SSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED---SLTTLSNL-------- 244 (764)
T ss_pred cCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc---ccccccCC--------
Confidence 6543 46778899999999999986544 78999999999999975432111000000 00000000
Q ss_pred cchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEE
Q 002782 250 SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLL 329 (882)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 329 (882)
+.+.+... +. +.+ ........+.+-+.++.+.|.+..|++.+.|.++.
T Consensus 245 ---------------~~f~~l~~---i~-~~i-------------s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmi 292 (764)
T KOG1063|consen 245 ---------------PVFMILEE---IQ-YRI-------------SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMI 292 (764)
T ss_pred ---------------ceeeeeee---EE-EEE-------------ehhhhhcCcccceEEEEEccchhhheecccCcceE
Confidence 01111100 00 000 00112234557778889999999999999999999
Q ss_pred EEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC---ceeeeeeeCCCcceEEeeeee
Q 002782 330 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---MSCSYVLAGHSEIVLCLDTCA 406 (882)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~ 406 (882)
+|.................+.|......+.-|++ +++.+++-+..|..++|.... ......+.||.+.|..++ +
T Consensus 293 iW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~--W 369 (764)
T KOG1063|consen 293 IWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVD--W 369 (764)
T ss_pred EEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeee--e
Confidence 9998876554444444455556666677888887 567888888889999998332 123345679999999999 9
Q ss_pred ecCCCEEEEEeecCCeEEEEeCCC----ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCC--------
Q 002782 407 LSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL-------- 474 (882)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~-------- 474 (882)
.|.|.+ +++.+.|.+-|+|-.-. -..+...+-|...++|+++-+. +..+++|...+.+++|+.+..
T Consensus 370 ~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i 447 (764)
T KOG1063|consen 370 DPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAI 447 (764)
T ss_pred cCCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHH
Confidence 999997 88899999999986542 2345556679999999999885 336899999999999976321
Q ss_pred -----CCC-----------------C----------------CCc-----c---------------cccchhhhhhcCCC
Q 002782 475 -----SDD-----------------A----------------EQP-----M---------------NLKAKAVVAAHGKD 496 (882)
Q Consensus 475 -----~~~-----------------~----------------~~~-----~---------------~~~~~~~~~~~~~~ 496 (882)
... + +.+ . -......+.+|+..
T Consensus 448 ~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE 527 (764)
T KOG1063|consen 448 CGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE 527 (764)
T ss_pred hCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee
Confidence 000 0 000 0 01122335689999
Q ss_pred eeEEEEcCCCcEEEEEcCCC-----cEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCce-
Q 002782 497 INSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC- 570 (882)
Q Consensus 497 i~~~~~s~~~~~la~~s~dg-----~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~- 570 (882)
|.+++.+|+|+++|+++... .|++|+..+-.....+.+|.-.|+.++|||||++|++.|.|+++.+|.......
T Consensus 528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~ 607 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD 607 (764)
T ss_pred EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch
Confidence 99999999999999987654 499999999999999999999999999999999999999999999999754322
Q ss_pred ---eeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCC--eeEEEe--ccCCCceEEEEEcCC-----CCEEEEE
Q 002782 571 ---LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG--ECIATY--DKHEDKIWALAVGKK-----TEMFATG 638 (882)
Q Consensus 571 ---~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~--~~~~~~--~~h~~~v~~l~~s~~-----~~~l~s~ 638 (882)
....+.|..-|..+.|+|++.+++|+|.|..|++|....+ +.+..+ ..+...|+++++.|- +..++.|
T Consensus 608 e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavG 687 (764)
T KOG1063|consen 608 EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVG 687 (764)
T ss_pred hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEE
Confidence 2336779999999999999999999999999999999887 555442 357889999998762 3367888
Q ss_pred eCCCCEEEEECCC
Q 002782 639 GSDALVNLWHDST 651 (882)
Q Consensus 639 ~~dg~i~iw~~~~ 651 (882)
-..|.|.+|+...
T Consensus 688 le~GeI~l~~~~~ 700 (764)
T KOG1063|consen 688 LEKGEIVLWRRKR 700 (764)
T ss_pred ecccEEEEEeccc
Confidence 8999999999764
No 19
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.3e-37 Score=306.70 Aligned_cols=492 Identities=19% Similarity=0.270 Sum_probs=368.0
Q ss_pred cccccccccccccCC-----ceEEccCCCEEEEEeCC---------eEEEEEcCCCceeeeecCCCccEEEEEEcC--CC
Q 002782 9 SYGCEPVLQQFYGGG-----PLVVSSDGSFIACACGE---------SINIVDLSNASIKSTIEGGSDTITALALSP--DD 72 (882)
Q Consensus 9 ~~~~~~~~~~~y~g~-----~va~s~dg~~la~~~~~---------~I~i~d~~~~~~~~~l~~~~~~I~~l~~sp--d~ 72 (882)
.|..+...|++|.|. +++++||.-.+++|... .|+|||..+-..++.+..-...|+|++||+ .|
T Consensus 89 l~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G 168 (626)
T KOG2106|consen 89 LYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGG 168 (626)
T ss_pred EEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCC
Confidence 455666788999987 89999999888865432 499999999888888887788999999998 35
Q ss_pred CEEEEE--eCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE---eecC-CCc
Q 002782 73 KLLFSS--GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY---FKGH-KGV 146 (882)
Q Consensus 73 ~~las~--~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~---~~~h-~~~ 146 (882)
.+|+.. +.+..+.+||++.+......+..+..|....|+|.+.-|+.....+.+.+|+++++....+ +.++ ..-
T Consensus 169 ~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~ 248 (626)
T KOG2106|consen 169 SLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKF 248 (626)
T ss_pred ceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceE
Confidence 666654 4567899999999988888888889999999999776555555569999999998876544 3332 356
Q ss_pred EEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeee
Q 002782 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (882)
Q Consensus 147 V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 226 (882)
|.|++|.++++ +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.. ++|+.|+.|..|| ...+..+..
T Consensus 249 Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~ 323 (626)
T KOG2106|consen 249 VLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRET 323 (626)
T ss_pred EEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEecc-ccccccccc
Confidence 99999999987 999999999999999888888777799999999999999964 5599999999999 444333333
Q ss_pred cCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcc
Q 002782 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (882)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (882)
..++....
T Consensus 324 elPe~~G~------------------------------------------------------------------------ 331 (626)
T KOG2106|consen 324 ELPEQFGP------------------------------------------------------------------------ 331 (626)
T ss_pred cCchhcCC------------------------------------------------------------------------
Confidence 22221110
Q ss_pred eeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc
Q 002782 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (882)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 386 (882)
+.. +.+....+++++..+.| .-=+++++
T Consensus 332 iRt--v~e~~~di~vGTtrN~i--------------------------------------------------L~Gt~~~~ 359 (626)
T KOG2106|consen 332 IRT--VAEGKGDILVGTTRNFI--------------------------------------------------LQGTLENG 359 (626)
T ss_pred eeE--EecCCCcEEEeeccceE--------------------------------------------------EEeeecCC
Confidence 000 11222223333333332 22222222
Q ss_pred eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeE
Q 002782 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (882)
Q Consensus 387 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i 466 (882)
- .....+|.+....++ ..|+.+. +++++.|+.+++|+ ..++... ..-..+..|+.|+|.| .++.|+..|..
T Consensus 360 f-~~~v~gh~delwgla--~hps~~q-~~T~gqdk~v~lW~--~~k~~wt-~~~~d~~~~~~fhpsg--~va~Gt~~G~w 430 (626)
T KOG2106|consen 360 F-TLTVQGHGDELWGLA--THPSKNQ-LLTCGQDKHVRLWN--DHKLEWT-KIIEDPAECADFHPSG--VVAVGTATGRW 430 (626)
T ss_pred c-eEEEEecccceeeEE--cCCChhh-eeeccCcceEEEcc--CCceeEE-EEecCceeEeeccCcc--eEEEeeccceE
Confidence 2 225567888888887 7777776 99999999999999 3333322 2345688899999998 69999999999
Q ss_pred EEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEE--ecccCceEEEEE
Q 002782 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF--RGHKRGIWSVEF 544 (882)
Q Consensus 467 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~ 544 (882)
.+.|..+.. .........+++++.|+|+|.+||+|+.|+.|+||.+......... +-|..+|+.+.|
T Consensus 431 ~V~d~e~~~-----------lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDw 499 (626)
T KOG2106|consen 431 FVLDTETQD-----------LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDW 499 (626)
T ss_pred EEEecccce-----------eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeee
Confidence 999987531 1222223778999999999999999999999999998765333222 224489999999
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCceeeE--------------ee----cCcCCEEEEEEEeCCCEEEEeecCCeEEEEE
Q 002782 545 SPVDQVVITASGDKTIKIWSISDGSCLKT--------------FE----GHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (882)
Q Consensus 545 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~--------------~~----~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 606 (882)
|+|+++|.+-+.|-.|-.|....-..+.. |. .|...|..++-+.+.+.+++|...|.|++|.
T Consensus 500 S~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~ 579 (626)
T KOG2106|consen 500 SSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFS 579 (626)
T ss_pred cCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEc
Confidence 99999999999999999994322111111 11 2444556666677788999999999999998
Q ss_pred cCCCe---eEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782 607 VRTGE---CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (882)
Q Consensus 607 ~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~ 649 (882)
..--. ....+.+|.+-|.+++|..+...+++.+.|.+|..|++
T Consensus 580 yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 580 YPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 75433 34566789999999999999999999889999999986
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.9e-39 Score=295.25 Aligned_cols=291 Identities=22% Similarity=0.366 Sum_probs=270.0
Q ss_pred eeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCC
Q 002782 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421 (882)
Q Consensus 342 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 421 (882)
.+...+.+.||...|.++.|.+ +.+++++++.||.+.|||.-+......++.....|...+ ++|.++. ++.|+-|+
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA--~sPSg~~-VAcGGLdN 119 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCA--YSPSGNF-VACGGLDN 119 (343)
T ss_pred eeeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEE--ECCCCCe-EEecCcCc
Confidence 4455688999999999999988 888999999999999999999988888998888998888 9999997 99999999
Q ss_pred eEEEEeCCCc------eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC
Q 002782 422 SVRLWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (882)
Q Consensus 422 ~i~iwd~~~~------~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (882)
...||++.+. ...+.+.+|++.+.++.|.+++. +++++.|.+..+||++++. ....+.+|.+
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~----------~~~~f~GH~g 187 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQ----------QTQVFHGHTG 187 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccce----------EEEEecCCcc
Confidence 9999999865 45567889999999999999764 9999999999999999764 5667789999
Q ss_pred CeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEe
Q 002782 496 DINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574 (882)
Q Consensus 496 ~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 574 (882)
+|.+++++| +++.+++|+-|+..++||++.+...++|.+|...|.+++|.|+|.-+++|+.|++.|+||++....+..|
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred ec--CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782 575 EG--HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (882)
Q Consensus 575 ~~--h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~ 648 (882)
.. -..+|++++||..|++|++|..|..+.+||.-.++.+..+.+|+++|.++..+|||..++||+.|..++||.
T Consensus 268 s~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 268 SHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 73 235899999999999999999999999999999999999999999999999999999999999999999994
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-38 Score=292.16 Aligned_cols=294 Identities=26% Similarity=0.406 Sum_probs=262.5
Q ss_pred EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEe
Q 002782 137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216 (882)
Q Consensus 137 ~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd 216 (882)
...++||.+.|.++.|++|.++ +++++.||.+.|||.-+...++.++-....|..++|+|.|+++++||.|+...||+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~--ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRR--IVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEEecccccceeeeEecCCcCe--EEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 3678999999999999998776 99999999999999999998999988999999999999999999999999999998
Q ss_pred cCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceee
Q 002782 217 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 296 (882)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~ 296 (882)
+.+...-
T Consensus 126 ls~~d~~------------------------------------------------------------------------- 132 (343)
T KOG0286|consen 126 LSTRDAE------------------------------------------------------------------------- 132 (343)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 7532100
Q ss_pred eeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCC
Q 002782 297 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 376 (882)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 376 (882)
+
T Consensus 133 -------------------------------------------------------------------------------g 133 (343)
T KOG0286|consen 133 -------------------------------------------------------------------------------G 133 (343)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred cEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcE
Q 002782 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 456 (882)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~ 456 (882)
. -...+.+.+|++.+.|.. |.+ +.. |++++.|.+..+||+++++.+..+.+|.+.|.++.++|...+.
T Consensus 134 ~--------~~v~r~l~gHtgylScC~--f~d-D~~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 134 N--------VRVSRELAGHTGYLSCCR--FLD-DNH-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred c--------ceeeeeecCccceeEEEE--EcC-CCc-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 0 011225678888888886 555 444 8999999999999999999999999999999999999955568
Q ss_pred EEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec--
Q 002782 457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-- 534 (882)
Q Consensus 457 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~-- 534 (882)
+++|+-|+..++||++.+. ....+.+|..+|+++.|.|+|.-+++|+.|++.++||++....+..+..
T Consensus 202 FvSg~cD~~aklWD~R~~~----------c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~ 271 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQ----------CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS 271 (343)
T ss_pred EEecccccceeeeeccCcc----------eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence 9999999999999998653 7788899999999999999999999999999999999999988887773
Q ss_pred ccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEE
Q 002782 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (882)
Q Consensus 535 h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 606 (882)
-..+|++++||..|++|++|..|.++.+||.-.++.+..+.||.+.|.++..+|||.-+++|+.|..++||.
T Consensus 272 ~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 346899999999999999999999999999999999999999999999999999999999999999999994
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-39 Score=292.44 Aligned_cols=292 Identities=24% Similarity=0.375 Sum_probs=258.5
Q ss_pred eeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCC-----CceeeeeeeCCCcceEEeeeeeecCCCEEEEE
Q 002782 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS-----SMSCSYVLAGHSEIVLCLDTCALSSGKILIVT 416 (882)
Q Consensus 342 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 416 (882)
.+.....+.+|++.|..++..+.+.+.+..++.|..+.+|++. .|..++.+.||...|..+. .+++|++ .++
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~--~s~dg~~-alS 80 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVV--LSSDGNF-ALS 80 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceE--EccCCce-EEe
Confidence 3455677889999999999999899999999999999999975 4566889999999999998 8899987 999
Q ss_pred eecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhh--hcC
Q 002782 417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHG 494 (882)
Q Consensus 417 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~ 494 (882)
++.|+++++||+.+++..+.+.+|...|.+++|+++.. .+++|+.|++|++|+.-.. +..+.. .+.
T Consensus 81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~-----------ck~t~~~~~~~ 148 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGV-----------CKYTIHEDSHR 148 (315)
T ss_pred ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeeccc-----------EEEEEecCCCc
Confidence 99999999999999999999999999999999999977 7999999999999998754 222222 236
Q ss_pred CCeeEEEEcCC--CcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceee
Q 002782 495 KDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 572 (882)
Q Consensus 495 ~~i~~~~~s~~--~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 572 (882)
..|+|+.|+|+ ..+|++++.|++|++||+++.+....+.||...++.+++||||.++++|+.||.+.+||++.++++.
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly 228 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY 228 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE
Confidence 78999999998 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEecc----C-----CCceEEEEEcCCCCEEEEEeCCCC
Q 002782 573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----H-----EDKIWALAVGKKTEMFATGGSDAL 643 (882)
Q Consensus 573 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~----h-----~~~v~~l~~s~~~~~l~s~~~dg~ 643 (882)
++. |...|.+++|+|+.-.|+.+ .+..|+|||+.++.++..+.. . .-...+++|++||..|++|..|+.
T Consensus 229 sl~-a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 229 SLE-AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred ecc-CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 887 88999999999986555544 455699999999998877752 2 223467899999999999999999
Q ss_pred EEEEECC
Q 002782 644 VNLWHDS 650 (882)
Q Consensus 644 i~iw~~~ 650 (882)
|++|.+.
T Consensus 307 irv~qv~ 313 (315)
T KOG0279|consen 307 IRVWQVA 313 (315)
T ss_pred EEEEEee
Confidence 9999864
No 23
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-37 Score=309.28 Aligned_cols=469 Identities=18% Similarity=0.261 Sum_probs=355.7
Q ss_pred ceEEccCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC
Q 002782 24 PLVVSSDGSFIACAC-GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (882)
Q Consensus 24 ~va~s~dg~~la~~~-~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~ 102 (882)
+|.++|-..++.++- .+.|.|||.+|...++.++-...+|.+..|-+..+++++|+.|..|+||+..+++.+..|.+|.
T Consensus 18 sVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~ 97 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHS 97 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccc
Confidence 699999999877766 5599999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEE
Q 002782 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 181 (882)
Q Consensus 103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~ 181 (882)
.-|.+++.+|...++.|+|.|-+|++||++.+ .+.++|.||..-|.+++|.|.. ..-+++++-|++|+||.+.+..+.
T Consensus 98 DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD-~ntFaS~sLDrTVKVWslgs~~~n 176 (794)
T KOG0276|consen 98 DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD-PNTFASASLDRTVKVWSLGSPHPN 176 (794)
T ss_pred cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC-ccceeeeeccccEEEEEcCCCCCc
Confidence 99999999999999999999999999999865 7889999999999999999974 356999999999999999999999
Q ss_pred EEecCcccceEEEEEccCC--CEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhcc
Q 002782 182 ATLDKHFSRVTSMAITSDG--STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK 259 (882)
Q Consensus 182 ~~l~~h~~~v~~l~~s~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (882)
.++.+|...|.++.|-+.| .+|++|+.|.++++||..+..++++
T Consensus 177 fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T---------------------------------- 222 (794)
T KOG0276|consen 177 FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT---------------------------------- 222 (794)
T ss_pred eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH----------------------------------
Confidence 9999999999999998744 6999999999999999987766544
Q ss_pred ccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccc
Q 002782 260 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 339 (882)
Q Consensus 260 ~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 339 (882)
T Consensus 223 -------------------------------------------------------------------------------- 222 (794)
T KOG0276|consen 223 -------------------------------------------------------------------------------- 222 (794)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeec
Q 002782 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 419 (882)
Q Consensus 340 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 419 (882)
+.||...|..+.|.| .-.++++|+.||++++|+..+.+...++.-.-+.+.|+. ..+.++. ++.|.+
T Consensus 223 ---------LeGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~--~~k~~~~-i~vG~D 289 (794)
T KOG0276|consen 223 ---------LEGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA--AHKGDGK-IAVGFD 289 (794)
T ss_pred ---------hhcccccceEEEecC-CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEe--ecCCCCe-EEEecc
Confidence 345666667777766 667999999999999999999998888888889999997 6677776 899998
Q ss_pred CCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEee-CCCeEEEEecCCCCC---CCCCcccccchhhhhhcCC
Q 002782 420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSD---DAEQPMNLKAKAVVAAHGK 495 (882)
Q Consensus 420 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~-~dg~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~ 495 (882)
+|.|.+ .+....+ .+..++.|+ ++.+.. +=..+.+-.+....+ ...-+...+.... -.-
T Consensus 290 eg~i~v-~lgreeP------------~vsMd~~gK-Iiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs---~ei 352 (794)
T KOG0276|consen 290 EGSVTV-KLGREEP------------AVSMDSNGK-IIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGS---VEI 352 (794)
T ss_pred CCcEEE-EccCCCC------------ceeecCCcc-EEEEcCceeeeeeceeccCcccccCCccccchhhhccc---ccc
Confidence 887755 3322222 223333333 222211 111112211111100 0000111111111 111
Q ss_pred CeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEee
Q 002782 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE 575 (882)
Q Consensus 496 ~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 575 (882)
....++.+|+|+++++++ ||.-.||-.-..+ .-+.+.-....|++|.+..++--.++.|+++ ++++..+++.
T Consensus 353 yPq~L~hsPNGrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~ 424 (794)
T KOG0276|consen 353 YPQTLAHSPNGRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIR 424 (794)
T ss_pred chHHhccCCCCcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccc
Confidence 234678899999888775 7887777532111 1134556778899998888888888999999 7777777765
Q ss_pred cCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782 576 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (882)
Q Consensus 576 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 654 (882)
.... +.+.- |..|+....++.+++||-.+++.++.++-.. -.+.|+.+|.+++.++.|. ..+.....+..
T Consensus 425 ~~~~----~e~i~-gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~---k~v~w~d~g~lVai~~d~S-fyil~~n~d~v 494 (794)
T KOG0276|consen 425 PDMS----AEGIF-GGPLLGVRSSDFLCFYDWESGELVRRIEVTS---KHVYWSDNGELVAIAGDDS-FYILKFNADAV 494 (794)
T ss_pred cccc----eeeec-CCceEEEEeCCeEEEEEcccceEEEEEeecc---ceeEEecCCCEEEEEecCc-eeEEEecHHHH
Confidence 2211 22222 3445555556789999999999999987433 3578999999888887765 56777666544
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.1e-37 Score=292.74 Aligned_cols=332 Identities=21% Similarity=0.327 Sum_probs=272.0
Q ss_pred eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 002782 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (882)
Q Consensus 52 ~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~ 131 (882)
.+..|..|.+.|.+++.+|+.+++|+|+.|..-.+|++.+|.....+.+|+..|+++.||.+|.+||||+-+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCe
Q 002782 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211 (882)
Q Consensus 132 ~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~ 211 (882)
.++.....+...-..+.-+.|+|-+ .+|+.|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|++++++..||+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 9999888887777889999999954 56999999999999999999889999999999999999999999999999999
Q ss_pred EEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecC
Q 002782 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291 (882)
Q Consensus 212 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~ 291 (882)
|++|+..++++...+...+..
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~----------------------------------------------------------- 234 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGL----------------------------------------------------------- 234 (399)
T ss_pred EEEEecCCCceeEEecccccC-----------------------------------------------------------
Confidence 999999887655433211100
Q ss_pred CceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEE
Q 002782 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371 (882)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 371 (882)
T Consensus 235 -------------------------------------------------------------------------------- 234 (399)
T KOG0296|consen 235 -------------------------------------------------------------------------------- 234 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeee--------ccccc
Q 002782 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--------GHMGA 443 (882)
Q Consensus 372 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~ 443 (882)
...++. +...+.. ++.|+.++.+++-+..+++.+.... .+...
T Consensus 235 --------------------------~~~~~~--~~~~~~~-~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~ 285 (399)
T KOG0296|consen 235 --------------------------ELPCIS--LNLAGST-LTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL 285 (399)
T ss_pred --------------------------cCCccc--cccccce-eEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence 000111 1112222 3444444444444444444333322 34444
Q ss_pred EEEEEEcc---CCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEE
Q 002782 444 VGAVAFSK---KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (882)
Q Consensus 444 v~~v~~s~---~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~i 520 (882)
+.++.+.| .-+ +.++|+-||+|.+||+... ..+..-.|...|+.+.|-+ ..+|++++.+|.|+.
T Consensus 286 ~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~-----------~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 286 DESVESIPSSSKLP-LAACGSVDGTIAIYDLAAS-----------TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQ 352 (399)
T ss_pred hhhhhhcccccccc-hhhcccccceEEEEecccc-----------hhheeccCCCceEEEEEcC-cchheeeccCceEEe
Confidence 55555444 433 6899999999999998764 3444556889999999998 789999999999999
Q ss_pred EeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (882)
Q Consensus 521 wd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~ 566 (882)
||.++|.+..++.||..+|.+++++|+.++++|+|.|++.+||+..
T Consensus 353 wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 353 WDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999999999999999999864
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.8e-37 Score=275.45 Aligned_cols=294 Identities=28% Similarity=0.481 Sum_probs=252.1
Q ss_pred CccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEE
Q 002782 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236 (882)
Q Consensus 157 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 236 (882)
...+|++++.|.+||+|...+|.|..+++...+.|..+.++|+++.|++++. ..|++||+.+...
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-------------- 73 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-------------- 73 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC--------------
Confidence 4467999999999999999999999999988999999999999999988884 4577777754210
Q ss_pred ecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCC
Q 002782 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN 316 (882)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (882)
T Consensus 74 -------------------------------------------------------------------------------- 73 (311)
T KOG0315|consen 74 -------------------------------------------------------------------------------- 73 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCC
Q 002782 317 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS 396 (882)
Q Consensus 317 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 396 (882)
..+..+.+|.
T Consensus 74 ----------------------------------------------------------------------~Pv~t~e~h~ 83 (311)
T KOG0315|consen 74 ----------------------------------------------------------------------NPVATFEGHT 83 (311)
T ss_pred ----------------------------------------------------------------------CceeEEeccC
Confidence 1223566787
Q ss_pred cceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCC
Q 002782 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (882)
Q Consensus 397 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~ 476 (882)
..|+++. |..+|++ +++|++||+++|||+....+.+.+. |..+|+++..+|+.. -|++|.++|.|++||+....-
T Consensus 84 kNVtaVg--F~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 84 KNVTAVG--FQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred CceEEEE--EeecCeE-EEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCcc
Confidence 8888887 8888988 9999999999999999966655554 669999999999855 699999999999999976421
Q ss_pred CCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc------eeEEEEecccCceEEEEEcCCCCE
Q 002782 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL------VSVVTFRGHKRGIWSVEFSPVDQV 550 (882)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~s~~~~~ 550 (882)
...........|.++.+.|||.+++.+...|+.++|++.+. +++..++.|.+-+..+.+|||+++
T Consensus 159 ---------~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 159 ---------THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred ---------ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence 11222334468999999999999999999999999998653 566778889999999999999999
Q ss_pred EEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEc
Q 002782 551 VITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG 629 (882)
Q Consensus 551 l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 629 (882)
|+++|.|.+++||+.++. +.-..+.+|...+..++||.||.||++++.|+.+++|++..++.+..+.+|.....|++..
T Consensus 230 lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999988 6667889999999999999999999999999999999999999999999999888887753
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.4e-37 Score=302.71 Aligned_cols=243 Identities=23% Similarity=0.399 Sum_probs=224.6
Q ss_pred eeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEe
Q 002782 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (882)
Q Consensus 391 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd 470 (882)
++..|.++|.++. +...|.+ +++++.|+++.+||..++.....+..|..+-..+.|-.+.. +++++.|+.|+++.
T Consensus 271 tl~~HkgPI~slK--Wnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~--F~ts~td~~i~V~k 345 (524)
T KOG0273|consen 271 TLGQHKGPIFSLK--WNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE--FATSSTDGCIHVCK 345 (524)
T ss_pred hhhccCCceEEEE--EcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce--EeecCCCceEEEEE
Confidence 5567888999998 8888988 99999999999999999999999999998877888877654 89999999999999
Q ss_pred cCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCC--
Q 002782 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-- 548 (882)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~-- 548 (882)
+.... +..++.+|.++|+++.|.|.|.+|+++|.|++++||..........+.+|...|..+.|+|+|
T Consensus 346 v~~~~----------P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v 415 (524)
T KOG0273|consen 346 VGEDR----------PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPV 415 (524)
T ss_pred ecCCC----------cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCc
Confidence 87543 566778899999999999999999999999999999999999999999999999999999965
Q ss_pred -------CEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCC
Q 002782 549 -------QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED 621 (882)
Q Consensus 549 -------~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~ 621 (882)
..+++++.|++|++||+..+.++.+|..|+.+|.+++|+|+|+|+++|+.||.|.+|+.++++.++.+.+ .+
T Consensus 416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~ 494 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TG 494 (524)
T ss_pred cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CC
Confidence 3899999999999999999999999999999999999999999999999999999999999999999974 66
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782 622 KIWALAVGKKTEMFATGGSDALVNLWHD 649 (882)
Q Consensus 622 ~v~~l~~s~~~~~l~s~~~dg~i~iw~~ 649 (882)
.|..++|+.+|..|..+-.|+.+++-|+
T Consensus 495 ~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 495 GIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred eEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 7999999999999999999999999875
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.3e-37 Score=275.22 Aligned_cols=295 Identities=23% Similarity=0.451 Sum_probs=251.3
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe--EEEEecCcccceE
Q 002782 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVT 192 (882)
Q Consensus 115 ~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~--~~~~l~~h~~~v~ 192 (882)
-+|+++|.|.+|++|...+|.|..+++...+.|..+...|+... |++++. -.||+||++++. ++.++.+|...|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~--LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKD--LAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcch--hhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 47999999999999999999999999988899999999998765 777665 459999999876 6899999999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcC
Q 002782 193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 272 (882)
Q Consensus 193 ~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (882)
++.|..+|+++++|+.||+++|||++...+.+
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR------------------------------------------------ 119 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR------------------------------------------------ 119 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccch------------------------------------------------
Confidence 99999999999999999999999987532211
Q ss_pred CCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeeccc
Q 002782 273 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352 (882)
Q Consensus 273 ~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 352 (882)
T Consensus 120 -------------------------------------------------------------------------------- 119 (311)
T KOG0315|consen 120 -------------------------------------------------------------------------------- 119 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce
Q 002782 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (882)
Q Consensus 353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 432 (882)
...|..+|+++. ..|+... |++|..+|.|++||+....
T Consensus 120 ---------------------------------------~~~~~spVn~vv--lhpnQte-Lis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 120 ---------------------------------------NYQHNSPVNTVV--LHPNQTE-LISGDQSGNIRVWDLGENS 157 (311)
T ss_pred ---------------------------------------hccCCCCcceEE--ecCCcce-EEeecCCCcEEEEEccCCc
Confidence 112334555554 5566665 8899999999999998876
Q ss_pred EEeee-ecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEE
Q 002782 433 CVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (882)
Q Consensus 433 ~~~~~-~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 511 (882)
+...+ .....+|.++.+.|+|. +++.+...|...+|++..... ...+.+...+++|...+..+.+|||+++||+
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~----~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQT----ASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCc----cccceEhhheecccceEEEEEECCCCcEEEe
Confidence 55543 34557899999999988 789999999999999976422 2234466668899999999999999999999
Q ss_pred EcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEE
Q 002782 512 GSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (882)
Q Consensus 512 ~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 587 (882)
+|.|.+++||+.++. +....+.+|.+.++..+||.||++|+||+.|+++++|++..++.++.+.+|.....+++..
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999988 7777899999999999999999999999999999999999999999999999888777764
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-36 Score=296.98 Aligned_cols=323 Identities=26% Similarity=0.432 Sum_probs=276.3
Q ss_pred CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC--CeEE--EEee----------cCCCcEEEEEEecCCCccEEEEEe
Q 002782 101 HDGPAIGMACHPSGG-LLATAGADRKVLVWDVDG--GFCT--HYFK----------GHKGVVSSILFHPDTDKSLLFSGS 165 (882)
Q Consensus 101 h~~~V~~l~fs~~~~-~lasg~~dg~v~vwd~~~--~~~~--~~~~----------~h~~~V~~l~f~~~~~~~~l~sgs 165 (882)
|..+|.+.+|+|-.. .+++|+.|...++|++.. ..+. ..++ ..+..|++++|+.+|.. |++|+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~--LatG~ 254 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL--LATGS 254 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe--EEEee
Confidence 999999999999766 899999999999999964 1111 1111 12457999999998765 99999
Q ss_pred CCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcc
Q 002782 166 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245 (882)
Q Consensus 166 ~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (882)
.||.+++|+. .|..+.++..|.++|.++.|+.+|.+|++++.||++.+||..++...+.++.
T Consensus 255 ~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~----------------- 316 (524)
T KOG0273|consen 255 EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF----------------- 316 (524)
T ss_pred cCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee-----------------
Confidence 9999999995 6778889999999999999999999999999999999999876654433221
Q ss_pred cccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeC
Q 002782 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (882)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (882)
T Consensus 317 -------------------------------------------------------------------------------- 316 (524)
T KOG0273|consen 317 -------------------------------------------------------------------------------- 316 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeee
Q 002782 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC 405 (882)
Q Consensus 326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 405 (882)
|..+...+.
T Consensus 317 ---------------------------------------------------------------------~s~~~lDVd-- 325 (524)
T KOG0273|consen 317 ---------------------------------------------------------------------HSAPALDVD-- 325 (524)
T ss_pred ---------------------------------------------------------------------ccCCccceE--
Confidence 111111122
Q ss_pred eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCccccc
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 485 (882)
|..+. . +++.+.|+.|+++.+....++.++.+|.+.|.++.|.|.+. +|++++.|+++++|+.....
T Consensus 326 W~~~~-~-F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~---------- 392 (524)
T KOG0273|consen 326 WQSND-E-FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSN---------- 392 (524)
T ss_pred EecCc-e-EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCc----------
Confidence 33333 3 89999999999999999999999999999999999999987 89999999999999976542
Q ss_pred chhhhhhcCCCeeEEEEcCCC---------cEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC
Q 002782 486 AKAVVAAHGKDINSLAVAPND---------SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 556 (882)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~---------~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 556 (882)
....+.+|.+.|..+.|+|.| ..+++++.|++|++||+..+.++.+|..|..+|.+++|+|+|+++|+|+.
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence 666778999999999999954 57999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782 557 DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (882)
Q Consensus 557 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 608 (882)
||.|.+|++++++..+.+.+ .+.|..++|+.+|.+|..+-.||.+.+-|++
T Consensus 473 dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 473 DGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999999999984 4569999999999999999999999998875
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.6e-36 Score=286.52 Aligned_cols=340 Identities=19% Similarity=0.289 Sum_probs=281.5
Q ss_pred eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEE
Q 002782 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (882)
Q Consensus 93 ~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~v 172 (882)
..+.+|..|+.+|.+++.+|+.+++|||+.|..-.+|++.+|.....+.+|...|+++.|+.++.. |+||+.+|.|+|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgtl--LATGdmsG~v~v 132 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTL--LATGDMSGKVLV 132 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceE--EEecCCCccEEE
Confidence 346778899999999999999999999999999999999999999999999999999999998765 999999999999
Q ss_pred EECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccch
Q 002782 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 252 (882)
Q Consensus 173 wd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (882)
|...++.....+...-+.+.-|.|+|.+..|+.|+.||.+.+|.+....
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~------------------------------- 181 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA------------------------------- 181 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-------------------------------
Confidence 9999999988887777889999999999999999999999999875321
Q ss_pred hhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEE
Q 002782 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (882)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 332 (882)
T Consensus 182 -------------------------------------------------------------------------------- 181 (399)
T KOG0296|consen 182 -------------------------------------------------------------------------------- 181 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCE
Q 002782 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412 (882)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 412 (882)
..+.+.||..++++=. +.|+|++
T Consensus 182 -------------------------------------------------------~~kv~~Gh~~~ct~G~--f~pdGKr 204 (399)
T KOG0296|consen 182 -------------------------------------------------------LCKVMSGHNSPCTCGE--FIPDGKR 204 (399)
T ss_pred -------------------------------------------------------eeeEecCCCCCccccc--ccCCCce
Confidence 1124556666666666 8899998
Q ss_pred EEEEeecCCeEEEEeCCCceEEeeeec-ccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhh
Q 002782 413 LIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (882)
Q Consensus 413 ~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 491 (882)
++++..||+|++||..++.++..... ......++.++..+. .++.|+.++.+++-+..+++...... ........
T Consensus 205 -~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~-~~~~g~~e~~~~~~~~~sgKVv~~~n--~~~~~l~~ 280 (399)
T KOG0296|consen 205 -ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS-TLTKGNSEGVACGVNNGSGKVVNCNN--GTVPELKP 280 (399)
T ss_pred -EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc-eeEeccCCccEEEEccccceEEEecC--CCCccccc
Confidence 99999999999999999988877653 344567777777765 68888888888777665442111100 01112222
Q ss_pred hcCCCeeEEEE---cCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC
Q 002782 492 AHGKDINSLAV---APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (882)
Q Consensus 492 ~~~~~i~~~~~---s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~ 568 (882)
.+...+.|+.+ |..=.+.|+|+.||+|.|||+...++...+. |..+|+.+.|-+ ..+|++++.||.|+.||.++|
T Consensus 281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred cchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence 34444455544 4456789999999999999998877666655 999999999998 889999999999999999999
Q ss_pred ceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782 569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (882)
Q Consensus 569 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 608 (882)
.++.++.||...|.+++++|++++++|+|.|+..+||++.
T Consensus 359 ~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 359 QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999999999999864
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-37 Score=295.20 Aligned_cols=291 Identities=28% Similarity=0.468 Sum_probs=271.3
Q ss_pred eeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeE
Q 002782 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (882)
Q Consensus 344 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 423 (882)
+....+.|+...|..+.|.| ....+++++.++.|++||..++++...++||.+.+..+. +...|+. +++++.|-.+
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~--~~a~Gk~-l~tcSsDl~~ 174 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDIS--FDASGKY-LATCSSDLSA 174 (406)
T ss_pred Cchhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEE--EecCccE-EEecCCccch
Confidence 44556778889999999977 778889999999999999999999999999999999998 8888887 9999999999
Q ss_pred EEEeCCC-ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEE
Q 002782 424 RLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (882)
Q Consensus 424 ~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (882)
.+||..+ .+++....+|...|.+++|-|.|. ++++++.|.+|+.|++.++. +..++.+|...|..++.
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~----------cv~t~~~h~ewvr~v~v 243 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGY----------CVKTFPGHSEWVRMVRV 243 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccce----------eEEeccCchHhEEEEEe
Confidence 9999987 667778889999999999999986 89999999999999998764 77788899999999999
Q ss_pred cCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCC---------------CCEEEEeeCCCcEEEEecCC
Q 002782 503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV---------------DQVVITASGDKTIKIWSISD 567 (882)
Q Consensus 503 s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~---------------~~~l~s~~~d~~i~iwd~~~ 567 (882)
+.||.++|+++.|.++++|-+.++.+...++.|.-+|.+++|.|. ++++.+++.|++|++||+.+
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 999999999999999999999999999999999999999999763 35999999999999999999
Q ss_pred CceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEE
Q 002782 568 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647 (882)
Q Consensus 568 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 647 (882)
|.|+.++.||.+.|..++|+|.|+||+|+..|+++++||+++++|..++..|+.-|+++.|..+..+++||+-|..+++|
T Consensus 324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EC
Q 002782 648 HD 649 (882)
Q Consensus 648 ~~ 649 (882)
.-
T Consensus 404 Ec 405 (406)
T KOG0295|consen 404 EC 405 (406)
T ss_pred ec
Confidence 63
No 31
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-34 Score=298.40 Aligned_cols=526 Identities=18% Similarity=0.279 Sum_probs=366.8
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 002782 55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG 134 (882)
Q Consensus 55 ~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~ 134 (882)
.++.-+..|..++|+|...++.++-.+|.|++||..-+.++..|..|.+||..++|+|++.++++||.|..|+||+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 35556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEE
Q 002782 135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 214 (882)
Q Consensus 135 ~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 214 (882)
+|+.++.||-.-|..+.|++ .+.+++++|+|.+|+||++.+++|+..+.||...|.|..|+|....+++++-|.+|++
T Consensus 84 rclftL~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred eehhhhccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 99999999999999999999 4567999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCceeeeeecC--cceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCC
Q 002782 215 WDLRDYSCKLTVPT--YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (882)
Q Consensus 215 wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~ 292 (882)
||+...+.....|. .+...... .. .-+.++ .
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~---~~------------------------~dLfg~--------------------~ 194 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQ---GN------------------------SDLFGQ--------------------T 194 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccc---cc------------------------hhhcCC--------------------c
Confidence 99986654333222 00000000 00 000011 1
Q ss_pred ceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEE
Q 002782 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (882)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 372 (882)
+..+.+..+.+.+++...+|.|.-..+++++.|..+.+|..... ..-......||.+.|.++-|.| ..+++++.
T Consensus 195 DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-----KaWEvDtcrgH~nnVssvlfhp-~q~lIlSn 268 (1202)
T KOG0292|consen 195 DAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-----KAWEVDTCRGHYNNVSSVLFHP-HQDLILSN 268 (1202)
T ss_pred CeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc-----cceeehhhhcccCCcceEEecC-ccceeEec
Confidence 22233455677899999999999999999999999999998764 3344567889999999999988 67799999
Q ss_pred EcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCC-----------------------
Q 002782 373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE----------------------- 429 (882)
Q Consensus 373 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----------------------- 429 (882)
+.|+.|++||+.....+.+++...+...+++ ..|..+. +++|.+.| +.+|-++
T Consensus 269 sEDksirVwDm~kRt~v~tfrrendRFW~la--ahP~lNL-fAAgHDsG-m~VFkleRErpa~~v~~n~LfYvkd~~i~~ 344 (1202)
T KOG0292|consen 269 SEDKSIRVWDMTKRTSVQTFRRENDRFWILA--AHPELNL-FAAGHDSG-MIVFKLERERPAYAVNGNGLFYVKDRFIRS 344 (1202)
T ss_pred CCCccEEEEecccccceeeeeccCCeEEEEE--ecCCcce-eeeecCCc-eEEEEEcccCceEEEcCCEEEEEccceEEe
Confidence 9999999999999999999988888888888 7777775 66555444 3344333
Q ss_pred ----CceE--Eeeeec---ccccEEEEEEccCCCcEEEEeeC-CCeEEEEecCCCCCCCCCccc-cc-------------
Q 002782 430 ----SRCC--VGVGTG---HMGAVGAVAFSKKLQNFLVSGSS-DHTIKVWSFDGLSDDAEQPMN-LK------------- 485 (882)
Q Consensus 430 ----~~~~--~~~~~~---~~~~v~~v~~s~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~-~~------------- 485 (882)
+.+. +..+.. ...++.++.++|.....+++... .|.-.++.+............ .+
T Consensus 345 ~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNr 424 (1202)
T KOG0292|consen 345 YDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNR 424 (1202)
T ss_pred eeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecc
Confidence 2111 111111 12577889999987655555443 355556665543211111000 00
Q ss_pred --------chhhhhhcC----------CCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCC
Q 002782 486 --------AKAVVAAHG----------KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 547 (882)
Q Consensus 486 --------~~~~~~~~~----------~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~ 547 (882)
......... ..+..+-+...|.+|+. ....|.+||+...+.+..+. -..|..+.||+|
T Consensus 425 favl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~d 500 (1202)
T KOG0292|consen 425 FAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSND 500 (1202)
T ss_pred eEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCc
Confidence 000000000 01122233333444333 23467888888777776665 356778888888
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe--eEEEeccCCCceEE
Q 002782 548 DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIATYDKHEDKIWA 625 (882)
Q Consensus 548 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~ 625 (882)
..+++.-+. .+|.|.+. .-+.+.++. ..-.|.+-+|..+|-+|.+... .|+ |-+.+|. .+.+++ .++.-
T Consensus 501 m~~vAll~K-h~i~i~~k-kL~l~~sih-Etiriksgawde~gVfiYtT~n--Hik-Yal~~GD~GIikTLd---~~iyi 571 (1202)
T KOG0292|consen 501 MSRVALLSK-HTITIADK-KLELLCSIH-ETIRIKSGAWDEDGVFIYTTLN--HIK-YALENGDSGIIKTLD---KPIYI 571 (1202)
T ss_pred cchhhhccc-ceEEEEec-chhheecch-heeEeeeceeccCceEEEEehh--hhh-hhhccCCcceEEecc---cceEE
Confidence 877776665 67777774 233333332 2234556677777766655442 122 2223332 233332 23333
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782 626 LAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (882)
Q Consensus 626 l~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 654 (882)
.+. .|+.++.-..|+.+.+..+...+-
T Consensus 572 tkv--~gn~V~cl~rd~~~~~~~IDptEy 598 (1202)
T KOG0292|consen 572 TKV--KGNKVFCLNRDGEIECLTIDPTEY 598 (1202)
T ss_pred EEe--eCCEEEEEecCCCeEEEeechHHH
Confidence 333 577777778888888888776543
No 32
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-36 Score=273.54 Aligned_cols=286 Identities=20% Similarity=0.371 Sum_probs=245.4
Q ss_pred ceEEccCC-CEEEEEeCC-eEEEEEcC-----CCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 002782 24 PLVVSSDG-SFIACACGE-SINIVDLS-----NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR 96 (882)
Q Consensus 24 ~va~s~dg-~~la~~~~~-~I~i~d~~-----~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~ 96 (882)
.++..+.+ ..|..++.+ .+.+|++. .|..++.+.||+..|+.++.++||++.++++.|+++++||+.+++..+
T Consensus 20 ~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~ 99 (315)
T KOG0279|consen 20 ALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR 99 (315)
T ss_pred EEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEE
Confidence 57777765 455555555 79999874 567899999999999999999999999999999999999999999999
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec-CCCcEEEEEEecCCCccEEEEEeCCCcEEEEEC
Q 002782 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (882)
Q Consensus 97 ~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~-h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~ 175 (882)
.|.+|...|.+++|++|++.+++|+.|.+|++||+.++........ |.+.|+|++|+|+....++++++.|++|++||+
T Consensus 100 ~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl 179 (315)
T KOG0279|consen 100 RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNL 179 (315)
T ss_pred EEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEcc
Confidence 9999999999999999999999999999999999987655444443 378999999999977788999999999999999
Q ss_pred CCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhh
Q 002782 176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (882)
Q Consensus 176 ~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (882)
.+.+....+.+|.+.++.+++||||..+++|+.||.+.+||++..+.+..+.....+.+++|.|+.
T Consensus 180 ~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr-------------- 245 (315)
T KOG0279|consen 180 RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR-------------- 245 (315)
T ss_pred CCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred hhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEec
Q 002782 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334 (882)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 334 (882)
+.++......|++||.+++........+.... ........-..+++++++..|+++..++.|++|.+.
T Consensus 246 ----------ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 246 ----------YWLCAATATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ----------eeEeeccCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 56677777779999999985544433322211 111122334678899999999999999999999764
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-36 Score=317.60 Aligned_cols=247 Identities=30% Similarity=0.528 Sum_probs=220.5
Q ss_pred EEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEE
Q 002782 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457 (882)
Q Consensus 378 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l 457 (882)
+.+.|..+......+.||.++|.... ++|+.+. |++++.|+++|+|.+.+..++..+.+|..+|+.+.|+|.|- ++
T Consensus 433 ~~~~D~~~~~~~~~L~GH~GPVyg~s--FsPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy-YF 508 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSGPVYGCS--FSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY-YF 508 (707)
T ss_pred hhhccccCCceeEEeecCCCceeeee--ecccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCce-EE
Confidence 34445555555667999999999999 9999987 99999999999999999999999999999999999999976 89
Q ss_pred EEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccC
Q 002782 458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR 537 (882)
Q Consensus 458 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~ 537 (882)
+|++.|++-++|..... .+.+++.+|-.+|.|+.|+|+..++|+||.|.+|++||+.+|..++.|.||.+
T Consensus 509 atas~D~tArLWs~d~~----------~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHN----------KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG 578 (707)
T ss_pred EecCCCceeeeeecccC----------CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence 99999999999998753 37888999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe------
Q 002782 538 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------ 611 (882)
Q Consensus 538 ~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~------ 611 (882)
+|++++|||+|++|++|+.||.|.+||+.+++.+..+.+|.+.|.++.|+.+|..||+||.|.+|++||+..-.
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~ 658 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLG 658 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985321
Q ss_pred ------------------eEEEeccCCCceEEEEEcCCCCEEEEE
Q 002782 612 ------------------CIATYDKHEDKIWALAVGKKTEMFATG 638 (882)
Q Consensus 612 ------------------~~~~~~~h~~~v~~l~~s~~~~~l~s~ 638 (882)
++.++..-..+|..+.|..-.-.|++|
T Consensus 659 ~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 659 HISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 444555556678888887655444443
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=288.77 Aligned_cols=305 Identities=27% Similarity=0.480 Sum_probs=271.9
Q ss_pred ceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (882)
Q Consensus 51 ~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd 130 (882)
...+.+.||..+|+.+-|+|+-..+|+++.|++|++||..+|++.+.++||...|..++|+..|++||+++.|-.+++||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 45577888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782 131 VDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (882)
Q Consensus 131 ~~~-~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d 209 (882)
.++ .+++..+.+|...|.+++|-|.++. +++++.|.+|+.|++.++.|+.++.+|...|..+..+.||..+++++.|
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~--ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDH--ILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCe--eeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 977 6677888899999999999998865 9999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCceeeeeecCcc-eeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeee
Q 002782 210 KVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (882)
Q Consensus 210 g~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~ 288 (882)
.+|++|-+.+.++...+...+ +++.+.+.|......
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~------------------------------------------- 293 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS------------------------------------------- 293 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcc-------------------------------------------
Confidence 999999999987776665444 566666665443100
Q ss_pred ecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcE
Q 002782 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (882)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 368 (882)
|....-+.+.+++
T Consensus 294 -------------------------------------------------------------------i~~at~~~~~~~~ 306 (406)
T KOG0295|consen 294 -------------------------------------------------------------------ISEATGSTNGGQV 306 (406)
T ss_pred -------------------------------------------------------------------hhhccCCCCCccE
Confidence 0000001125678
Q ss_pred EEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEE
Q 002782 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (882)
Q Consensus 369 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~ 448 (882)
+.+++.|+.|++||+.++.++.++.+|...|..++ ++|.|++ |+++.+|+++++||+++++++..+..|..-++++.
T Consensus 307 l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a--f~p~Gky-i~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA--FSPGGKY-ILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD 383 (406)
T ss_pred EEeecccceEEEEeccCCeEEEEEecccceeeeeE--EcCCCeE-EEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence 99999999999999999999999999999999999 9999988 99999999999999999999999999999999999
Q ss_pred EccCCCcEEEEeeCCCeEEEEec
Q 002782 449 FSKKLQNFLVSGSSDHTIKVWSF 471 (882)
Q Consensus 449 ~s~~~~~~l~s~~~dg~i~~wd~ 471 (882)
|..+.. ++++|+-|.++++|..
T Consensus 384 fh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCc-eEEeccccceeeeeec
Confidence 998877 8999999999999974
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-34 Score=292.20 Aligned_cols=407 Identities=20% Similarity=0.324 Sum_probs=318.3
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEEC
Q 002782 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (882)
Q Consensus 96 ~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~ 175 (882)
+.+..++..|.++.|+|...+++++-.+|.|.|||.++...+..+.-..-+|.+..|.+ +...+++|++|..|+||++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia--RknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA--RKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee--ccceEEEecCCceEEEEec
Confidence 44556889999999999999999999999999999999999999999999999999998 4567999999999999999
Q ss_pred CCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhh
Q 002782 176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (882)
Q Consensus 176 ~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (882)
++++.+..+..|...|.+++.+|...++++++.|-.|++||.+.
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~------------------------------------ 128 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN------------------------------------ 128 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC------------------------------------
Confidence 99999999999999999999999999999999999999999863
Q ss_pred hhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecc
Q 002782 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (882)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 335 (882)
T Consensus 129 -------------------------------------------------------------------------------- 128 (794)
T KOG0276|consen 129 -------------------------------------------------------------------------------- 128 (794)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCC-CEEE
Q 002782 336 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG-KILI 414 (882)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~l 414 (882)
...+.....||..-|.+++|.|.+.+.+++++-|++|++|++.+..+..++.+|...|.|++ +.+.| +.++
T Consensus 129 ------~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vd--yy~~gdkpyl 200 (794)
T KOG0276|consen 129 ------EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVD--YYTGGDKPYL 200 (794)
T ss_pred ------ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEE--eccCCCcceE
Confidence 22234566789999999999999999999999999999999999999999999999999999 55544 3359
Q ss_pred EEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcC
Q 002782 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494 (882)
Q Consensus 415 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 494 (882)
++|++|.++++||.++..|++++.+|...|..++|+|.-+ ++++|++||++++|+..+.. ...++.-..
T Consensus 201 IsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~----------lE~tLn~gl 269 (794)
T KOG0276|consen 201 ISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYK----------LEKTLNYGL 269 (794)
T ss_pred EecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCccee----------hhhhhhcCC
Confidence 9999999999999999999999999999999999999987 89999999999999976543 333444455
Q ss_pred CCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec--------c-------------c-----------------
Q 002782 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--------H-------------K----------------- 536 (882)
Q Consensus 495 ~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~--------h-------------~----------------- 536 (882)
..+.|++-.+.+..+++|...|.|.+ .+...++..++.. | .
T Consensus 270 eRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLg 348 (794)
T KOG0276|consen 270 ERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELG 348 (794)
T ss_pred ceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhcc
Confidence 67889998888888888887776544 2222222111110 0 0
Q ss_pred ---CceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782 537 ---RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613 (882)
Q Consensus 537 ---~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~ 613 (882)
--...++-+|+|++++++ .||.-.||..-..+ ..+.+.-....|++|.+..+.-..++.|+++ ++++..
T Consensus 349 s~eiyPq~L~hsPNGrfV~Vc-gdGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ 420 (794)
T KOG0276|consen 349 SVEIYPQTLAHSPNGRFVVVC-GDGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEH 420 (794)
T ss_pred ccccchHHhccCCCCcEEEEe-cCccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceec
Confidence 012235667888877665 45877777631111 1134555667888887777777778888888 677666
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782 614 ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 614 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~ 653 (882)
..+...-. +. .--.|. |+....++.+++||-.++.
T Consensus 421 ksi~~~~~---~e-~i~gg~-Llg~~ss~~~~fydW~~~~ 455 (794)
T KOG0276|consen 421 KSIRPDMS---AE-GIFGGP-LLGVRSSDFLCFYDWESGE 455 (794)
T ss_pred cccccccc---ee-eecCCc-eEEEEeCCeEEEEEcccce
Confidence 65542111 11 111333 4444445557777755543
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-37 Score=291.66 Aligned_cols=277 Identities=28% Similarity=0.562 Sum_probs=250.7
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce
Q 002782 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (882)
Q Consensus 353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 432 (882)
...|.++.| ++..+++|..|++|.+||..+..+.+.+.||++.|.|+. + +.+ ++++|+.|.+|++||.++++
T Consensus 197 skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLq--y--d~r-viisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQ--Y--DER-VIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEEe---cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeee--c--cce-EEEecCCCceEEEEeccCCc
Confidence 355677776 778999999999999999999999999999999999998 2 333 59999999999999999999
Q ss_pred EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE
Q 002782 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (882)
Q Consensus 433 ~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 512 (882)
++.++-.|...|..+.|+.. ++++++.|.++.+||+.... .......+.+|...|+.+.|+ .++++++
T Consensus 269 ~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps-------~it~rrVLvGHrAaVNvVdfd--~kyIVsA 336 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPT-------DITLRRVLVGHRAAVNVVDFD--DKYIVSA 336 (499)
T ss_pred hhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCch-------HHHHHHHHhhhhhheeeeccc--cceEEEe
Confidence 99999999999999999865 89999999999999998653 344778889999999999996 4599999
Q ss_pred cCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCE
Q 002782 513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592 (882)
Q Consensus 513 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 592 (882)
+.|.+|++|++.+++.+.++.+|..+|-|+.+. |+++++|+.|.+|++||+..|.|++.++||..-|.++.|. .+.
T Consensus 337 SgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~kr 412 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKR 412 (499)
T ss_pred cCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cce
Confidence 999999999999999999999999999999886 9999999999999999999999999999999999999995 679
Q ss_pred EEEeecCCeEEEEEcCCCe---------eEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHH
Q 002782 593 IVSCGADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (882)
Q Consensus 593 l~s~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 655 (882)
+++|+.||.|++||+..+. |+.++..|.+.|..+.| |...+++++.|.+|.|||...+...
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 9999999999999998764 55666779999999999 7888999999999999999876543
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5e-37 Score=295.12 Aligned_cols=285 Identities=24% Similarity=0.432 Sum_probs=257.3
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce
Q 002782 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (882)
Q Consensus 353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 432 (882)
.-.|..+.|.| +++.|++|+..|.+.+|+..+......++.|..+|.++. +++++.+ +++|+.+|.|++|+.+-..
T Consensus 96 kc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~--ws~~g~w-miSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 96 KCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMK--WSHNGTW-MISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEE--EccCCCE-EEEcCCCceEEecccchhh
Confidence 35678888887 788999999999999999988777778899999999999 9999998 9999999999999987665
Q ss_pred EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE
Q 002782 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (882)
Q Consensus 433 ~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 512 (882)
.......|...|++++|+|+.. .+++++.||+|++||..... ....+.+|+-.|.+++|+|...++|+|
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~k----------ee~vL~GHgwdVksvdWHP~kgLiasg 240 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPK----------EERVLRGHGWDVKSVDWHPTKGLIASG 240 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCc----------hhheeccCCCCcceeccCCccceeEEc
Confidence 5544455669999999999765 79999999999999987543 555668999999999999999999999
Q ss_pred cCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEe-CCC
Q 002782 513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT-RGA 591 (882)
Q Consensus 513 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~-~g~ 591 (882)
+.|..|++||.+++.++.++.+|+..|..+.|+|++++|+++|.|..++++|+++-+.+.++++|...|+++.|+| ...
T Consensus 241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES 320 (464)
T ss_pred cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 456
Q ss_pred EEEEeecCCeEEEEEcCCCeeEEEe-ccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782 592 QIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (882)
Q Consensus 592 ~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~ 652 (882)
.|.+|+.||.|..|.+...+++..+ .+|...||+++|+|=|..|++|+.|.++++|....+
T Consensus 321 lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred ceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 7889999999999999866666555 479999999999999999999999999999986654
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.7e-36 Score=316.89 Aligned_cols=274 Identities=28% Similarity=0.467 Sum_probs=240.7
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce
Q 002782 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (882)
Q Consensus 353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 432 (882)
...+.|..|++ +..++|.|..|..|++|.+...+.. .+++.. .-.. +-+++.|-.+.+.|.....
T Consensus 378 ~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~------------~l~~-~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 378 YQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLK-KLKDAS------------DLSN-IDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCcceeEeecC-CcchhhccccccEEEEEecchhhhc-cccchh------------hhcc-ccccccchhhhhccccCCc
Confidence 34556666665 6679999999999999998765322 222111 0011 3334445557777888777
Q ss_pred EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE
Q 002782 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (882)
Q Consensus 433 ~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 512 (882)
....+.+|.++|..+.|+|+.+ +|+++++|+++++|.+.+.. ......+|..+|..+.|+|.|-++|++
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~s----------~~V~y~GH~~PVwdV~F~P~GyYFata 511 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWS----------CLVIYKGHLAPVWDVQFAPRGYYFATA 511 (707)
T ss_pred eeEEeecCCCceeeeeeccccc-ceeeccCCcceeeeecccce----------eEEEecCCCcceeeEEecCCceEEEec
Confidence 7788999999999999999966 99999999999999998653 666677999999999999999999999
Q ss_pred cCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCE
Q 002782 513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592 (882)
Q Consensus 513 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 592 (882)
+.|++.++|......+.+.+.+|...|.|+.|+|+..++++||.|.+||+||+.+|..++.|.||.++|.+++|||+|++
T Consensus 512 s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred CCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782 593 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (882)
Q Consensus 593 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~ 652 (882)
|++|+.||.|++||+.+|..+..+.+|.+.|.++.||.||..||+||.|.+|++||+...
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999999999999999999999999999999999998754
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=267.17 Aligned_cols=288 Identities=23% Similarity=0.394 Sum_probs=260.2
Q ss_pred eeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCC-CceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS-SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (882)
Q Consensus 344 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 422 (882)
.+...+.||.++|..+.|.| ++..|++|+.|..|.+|+.. ..+....+.+|.+.|..+. +.+++.. +++++.|.+
T Consensus 38 ap~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~--~~~d~s~-i~S~gtDk~ 113 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELH--GMRDGSH-ILSCGTDKT 113 (338)
T ss_pred chhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeee--eccCCCE-EEEecCCce
Confidence 44567789999999999999 99999999999999999954 4555667889999999999 8899998 999999999
Q ss_pred EEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEE
Q 002782 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (882)
Q Consensus 423 i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (882)
++.||.++|+++...++|..-|.++..+.-|..++.+++.|+++++||++... ..........++++.|
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-----------~~~t~~~kyqltAv~f 182 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-----------AIKTFENKYQLTAVGF 182 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-----------hhhccccceeEEEEEe
Confidence 99999999999999999999999999887888889999999999999998542 1111223557899999
Q ss_pred cCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCC----CceeeEeecCc
Q 002782 503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD----GSCLKTFEGHT 578 (882)
Q Consensus 503 s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~h~ 578 (882)
...+..+.+|+-|+.|++||++......++.||..+|+.+..+|+|.++.+-+.|.++++||++. .+|+..+.+|.
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 99999999999999999999999999999999999999999999999999999999999999875 46788888865
Q ss_pred C----CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEE
Q 002782 579 S----SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 646 (882)
Q Consensus 579 ~----~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 646 (882)
. ....++|+|+++.+-.|+.|..+++||......+..+.+|.+.|.+++|+|....|.+++.|.+|.+
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 3 4577899999999999999999999999888999999999999999999999999999999999876
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.9e-35 Score=274.58 Aligned_cols=291 Identities=27% Similarity=0.448 Sum_probs=250.3
Q ss_pred eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 002782 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (882)
Q Consensus 52 ~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~ 131 (882)
..+.+.||.+.|.|+++.|.+.++++|+.|++++|||+.+|++..++.||...|..+++|+-..||++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCe
Q 002782 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211 (882)
Q Consensus 132 ~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~ 211 (882)
+..+.++.+.||-+.|.|++.+|.-+. |++|+.|.+++|||+.+...+..+.+|.++|.++.+.|....+++|+.|++
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldv--l~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDV--LVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred hhhhhHHHhccccceeEEEecccccee--EEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 999999999999999999999997554 999999999999999999999999999999999999998899999999999
Q ss_pred EEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecC
Q 002782 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291 (882)
Q Consensus 212 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~ 291 (882)
|++||+..++...++.
T Consensus 301 vrlWDl~agkt~~tlt---------------------------------------------------------------- 316 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLT---------------------------------------------------------------- 316 (460)
T ss_pred EEEeeeccCceeEeee----------------------------------------------------------------
Confidence 9999998665433221
Q ss_pred CceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEE
Q 002782 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371 (882)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 371 (882)
.|...+.+++..| ....+|+
T Consensus 317 -----------------------------------------------------------~hkksvral~lhP-~e~~fAS 336 (460)
T KOG0285|consen 317 -----------------------------------------------------------HHKKSVRALCLHP-KENLFAS 336 (460)
T ss_pred -----------------------------------------------------------cccceeeEEecCC-chhhhhc
Confidence 1223344444443 4445555
Q ss_pred EEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeee--------ccccc
Q 002782 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--------GHMGA 443 (882)
Q Consensus 372 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~ 443 (882)
++. ..|+-|++..+.....+.+|...+.+++ ...++ ++++|+++|.+.+||..++...+... .....
T Consensus 337 as~-dnik~w~~p~g~f~~nlsgh~~iintl~--~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEag 411 (460)
T KOG0285|consen 337 ASP-DNIKQWKLPEGEFLQNLSGHNAIINTLS--VNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAG 411 (460)
T ss_pred cCC-ccceeccCCccchhhccccccceeeeee--eccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccc
Confidence 555 5789999999999889999999999997 55555 38999999999999999986655442 13457
Q ss_pred EEEEEEccCCCcEEEEeeCCCeEEEEecCCC
Q 002782 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (882)
Q Consensus 444 v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~ 474 (882)
|.+.+|...+. .|++|..|++|++|.-+..
T Consensus 412 I~as~fDktg~-rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 412 IFASCFDKTGS-RLITGEADKTIKMYKEDEH 441 (460)
T ss_pred eeEEeecccCc-eEEeccCCcceEEEecccc
Confidence 88999998877 6999999999999986543
No 41
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.2e-32 Score=282.21 Aligned_cols=539 Identities=18% Similarity=0.262 Sum_probs=390.2
Q ss_pred ceEEccCCC---EEEEEeCC-eEEEEEcCCCc--eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eE
Q 002782 24 PLVVSSDGS---FIACACGE-SINIVDLSNAS--IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CL 95 (882)
Q Consensus 24 ~va~s~dg~---~la~~~~~-~I~i~d~~~~~--~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~--~~ 95 (882)
++.+-|+.+ ++++|..+ .|.+|.++... .+..+++|... +++++.......+...|+.+.+||.+..+ +.
T Consensus 59 C~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~--~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~ 136 (764)
T KOG1063|consen 59 CVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKE--CVCVVARSSVMTCKAADGTVSVWDKQQDEVFLL 136 (764)
T ss_pred EEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCccee--EEEEEeeeeEEEeeccCceEEEeecCCCceeee
Confidence 666777777 66666655 89999998433 45667776555 44554444444444689999999996555 33
Q ss_pred EEeecCCCC--EEEEEEcCC-CC-EEEEEeCCCcEEEEECCCC--eEEEEeecCCCcEEEEEEecCCC-ccEEEEEeCCC
Q 002782 96 RSWKGHDGP--AIGMACHPS-GG-LLATAGADRKVLVWDVDGG--FCTHYFKGHKGVVSSILFHPDTD-KSLLFSGSDDA 168 (882)
Q Consensus 96 ~~~~~h~~~--V~~l~fs~~-~~-~lasg~~dg~v~vwd~~~~--~~~~~~~~h~~~V~~l~f~~~~~-~~~l~sgs~dg 168 (882)
..++--.+. -.|+++.|+ +. ++|.|+.+..|.++.-..+ .....+.||...|.+++|...+. ..+|+++|.|.
T Consensus 137 ~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~ 216 (764)
T KOG1063|consen 137 AVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDR 216 (764)
T ss_pred hheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCce
Confidence 333322222 345666663 33 4566777777888766543 45677889999999999976655 78899999999
Q ss_pred cEEEEECCCCe---------------------EEE----------EecCcccceEEEEEccCCCEEEEEeCCCeEEEEec
Q 002782 169 TVRVWDLLAKK---------------------CVA----------TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (882)
Q Consensus 169 ~I~vwd~~~~~---------------------~~~----------~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~ 217 (882)
.||+|.+.-+. +.. .+.||.+.|.++.|+|.+..|++++.|+++.+|.-
T Consensus 217 yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~p 296 (764)
T KOG1063|consen 217 YIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKP 296 (764)
T ss_pred EEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEec
Confidence 99999774221 111 23489999999999999999999999999999986
Q ss_pred CCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeee
Q 002782 218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 297 (882)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~ 297 (882)
.+..-+..- .+..|
T Consensus 297 d~~tGiWv~----------------------------------------~vRlG-------------------------- 310 (764)
T KOG1063|consen 297 DENTGIWVD----------------------------------------VVRLG-------------------------- 310 (764)
T ss_pred CCccceEEE----------------------------------------EEEee--------------------------
Confidence 543211100 00000
Q ss_pred eccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCc
Q 002782 298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 377 (882)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 377 (882)
+......++....++|+++.+++-+..|..++|... ..........+.||-+.|.++.|.| .+.++++.+.|.+
T Consensus 311 -e~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~----d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQT 384 (764)
T KOG1063|consen 311 -EVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK----DKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQT 384 (764)
T ss_pred -cccccccceeeEEEcCCCCEEEEecccCcEEEEecc----CccceeeccccccccccceeeeecC-CCCEEEEeccccc
Confidence 011223567788888999889999999999999822 1224455667889999999999998 5668999999999
Q ss_pred EEEEeCCC----ceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC-----------------------
Q 002782 378 VQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----------------------- 430 (882)
Q Consensus 378 i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------------- 430 (882)
-++|-.-. .-.+...+-|.....|++ +.+. +..+++|.+...+|+|+...
T Consensus 385 TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~--~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~g 461 (764)
T KOG1063|consen 385 TRLFARWGRQQEWHEIARPQIHGYDLTCLS--FVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDG 461 (764)
T ss_pred eeeecccccccceeeecccccccccceeee--hccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccc
Confidence 99987551 122334556888899997 5554 34499999999999995221
Q ss_pred --------------------ceE----E-----------------------------eeeecccccEEEEEEccCCCcEE
Q 002782 431 --------------------RCC----V-----------------------------GVGTGHMGAVGAVAFSKKLQNFL 457 (882)
Q Consensus 431 --------------------~~~----~-----------------------------~~~~~~~~~v~~v~~s~~~~~~l 457 (882)
|.. . ..+.+|...|.+++.+|+++ ++
T Consensus 462 A~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-li 540 (764)
T KOG1063|consen 462 ANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LI 540 (764)
T ss_pred cccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EE
Confidence 000 0 01227888999999999977 88
Q ss_pred EEeeCC-----CeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCce----e
Q 002782 458 VSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV----S 528 (882)
Q Consensus 458 ~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~----~ 528 (882)
++++.. ..|++|+...- .....+..|.-.|+.++|||||++|++.+.|+++.+|...... .
T Consensus 541 ASaCKS~~~ehAvI~lw~t~~W----------~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 541 ASACKSSLKEHAVIRLWNTANW----------LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred eehhhhCCccceEEEEEeccch----------hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh
Confidence 888754 45889997643 3455678899999999999999999999999999999875431 2
Q ss_pred EEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC--ceeeE--eecCcCCEEEEEEEeC-----CCEEEEeecC
Q 002782 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG--SCLKT--FEGHTSSVLRASFLTR-----GAQIVSCGAD 599 (882)
Q Consensus 529 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~--~~~h~~~v~~~~~s~~-----g~~l~s~~~d 599 (882)
....+.|..-|++..|+|++.+++|+|.|.+|++|...+. +++.. ...+..+|+.+++.|- +..++.|-..
T Consensus 611 fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~ 690 (764)
T KOG1063|consen 611 FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK 690 (764)
T ss_pred hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc
Confidence 2336789999999999999999999999999999999887 54443 3347889999999762 2356778889
Q ss_pred CeEEEEEcCC-------Ce-----eEEEeccCCCceEEEEEcCC----------CCEEEEEeCCCCEEEEECC
Q 002782 600 GLVKLWTVRT-------GE-----CIATYDKHEDKIWALAVGKK----------TEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 600 g~i~iwd~~~-------~~-----~~~~~~~h~~~v~~l~~s~~----------~~~l~s~~~dg~i~iw~~~ 650 (882)
|.|.+|..+. +. ......+|.+.|..+.|+|. ...|++|+.|..++++++.
T Consensus 691 GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 691 GEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 9999999651 11 11122357788999999975 2357999999999999864
No 42
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=6.1e-32 Score=266.76 Aligned_cols=478 Identities=16% Similarity=0.212 Sum_probs=355.9
Q ss_pred ceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCeeE
Q 002782 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSR--------EIRVWDLSTLKCL 95 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg--------~i~iwd~~~~~~~ 95 (882)
++-+-|.|..++. ....+.+++.+... .+.+.||+..|.|++++||.-.+|+|-..| .+++||..+...+
T Consensus 70 Nly~lptgE~vyf-vA~V~Vl~n~ee~~-Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL 147 (626)
T KOG2106|consen 70 NLYLLPTGELVYF-VAAVGVLYNWEERS-QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTL 147 (626)
T ss_pred eeEEccCccEEEE-eccEEEEEeehhhh-cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceee
Confidence 5667788866544 34566777775533 355678999999999999998888774433 6999999888888
Q ss_pred EEeecCCCCEEEEEEcC--CCCEEEEEe--CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEE
Q 002782 96 RSWKGHDGPAIGMACHP--SGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (882)
Q Consensus 96 ~~~~~h~~~V~~l~fs~--~~~~lasg~--~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~ 171 (882)
..+..-...|.|++||+ .|.+|+... .+..+.|||+..+......+..+..|....|+|.+.. ++.....|.+.
T Consensus 148 ~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~n--liit~Gk~H~~ 225 (626)
T KOG2106|consen 148 HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPN--LIITCGKGHLY 225 (626)
T ss_pred eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCc--EEEEeCCceEE
Confidence 88887788999999998 445666543 4567999999999888888888899999999998664 44555567899
Q ss_pred EEECCCCeEEEE---ecCc-ccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccc
Q 002782 172 VWDLLAKKCVAT---LDKH-FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF 247 (882)
Q Consensus 172 vwd~~~~~~~~~---l~~h-~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (882)
+|+++.+..... +..+ ...|.+++|.++|. +++|..+|.|.+|+..+.+..++
T Consensus 226 Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~---------------------- 282 (626)
T KOG2106|consen 226 FWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQ---------------------- 282 (626)
T ss_pred EEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeE----------------------
Confidence 999998876543 3332 25799999999986 67999999999998754332211
Q ss_pred cccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCe
Q 002782 248 LSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQ 327 (882)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 327 (882)
T Consensus 283 -------------------------------------------------------------------------------- 282 (626)
T KOG2106|consen 283 -------------------------------------------------------------------------------- 282 (626)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc-eeeeeeeCCCcceEEeeeee
Q 002782 328 LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYVLAGHSEIVLCLDTCA 406 (882)
Q Consensus 328 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~ 406 (882)
...|++.|.+++... ++.+ ++|+.|..|..||-.-. .....++...+++..+.
T Consensus 283 ---------------------~~aH~ggv~~L~~lr-~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~--- 336 (626)
T KOG2106|consen 283 ---------------------VHAHDGGVFSLCMLR-DGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA--- 336 (626)
T ss_pred ---------------------eeecCCceEEEEEec-CccE-eecCccceEEeccccccccccccCchhcCCeeEEe---
Confidence 113555666666654 4444 44889999999993211 12224556677787775
Q ss_pred ecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccc
Q 002782 407 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA 486 (882)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~ 486 (882)
+.+.- ++.|...+.|..=.++++-.+ ...+|....+.++.+|+.. .+++++.|+.+++|+-. .
T Consensus 337 -e~~~d-i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~~~-------------k 399 (626)
T KOG2106|consen 337 -EGKGD-ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWNDH-------------K 399 (626)
T ss_pred -cCCCc-EEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChh-heeeccCcceEEEccCC-------------c
Confidence 33333 777777777766666665443 3457888999999999866 79999999999999921 1
Q ss_pred hhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (882)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~ 566 (882)
..-......+..|+.|+|.| .+|.|+..|...+.|.++...+. +.....+++++.|+|+|.+||.|+.|+.|++|.+.
T Consensus 400 ~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 400 LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 11122345678999999999 99999999999999999955544 44448999999999999999999999999999987
Q ss_pred CCce-eeEe-ecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCC--------------eeEEEe----ccCCCceEEE
Q 002782 567 DGSC-LKTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG--------------ECIATY----DKHEDKIWAL 626 (882)
Q Consensus 567 ~~~~-~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~--------------~~~~~~----~~h~~~v~~l 626 (882)
.+.. .... ..|..+|+.+.||+|+++|.+-+.|-.|-.|....- .|.--| -.|...|.++
T Consensus 478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~ 557 (626)
T KOG2106|consen 478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAV 557 (626)
T ss_pred CCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHh
Confidence 6533 2222 224489999999999999999999999999943211 111111 1355677788
Q ss_pred EEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782 627 AVGKKTEMFATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 627 ~~s~~~~~l~s~~~dg~i~iw~~~~~~ 653 (882)
+-+.+++++++|.+.|.|++|...--+
T Consensus 558 ~rs~~~~~lA~gdd~g~v~lf~yPc~s 584 (626)
T KOG2106|consen 558 ARSHCEKLLASGDDFGKVHLFSYPCSS 584 (626)
T ss_pred hhhhhhhhhhccccCceEEEEccccCC
Confidence 888899999999999999999876543
No 43
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.6e-35 Score=279.72 Aligned_cols=294 Identities=23% Similarity=0.361 Sum_probs=244.4
Q ss_pred eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 002782 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV 128 (882)
Q Consensus 52 ~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~---~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~v 128 (882)
..+.+..|.+.|.-+.||++|+|||+++.|.+..+|++... +..+++.+|..+|..+.||||.++|++++.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 34667889999999999999999999999999999987543 457889999999999999999999999999999999
Q ss_pred EECCCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcc-cceEEEEEccCCCEEEEE
Q 002782 129 WDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLISA 206 (882)
Q Consensus 129 wd~~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~-~~v~~l~~s~~~~~l~s~ 206 (882)
||+.+|.+.+.+. +|...+.+++|.||+.+ +++|+.|+.|..||+... .....++-. ..|.+++.++||+++++.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~--~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR--FVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCce--eEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEE
Confidence 9999999887775 45678999999999887 999999999999998543 344444433 469999999999999999
Q ss_pred eCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCcee
Q 002782 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286 (882)
Q Consensus 207 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~ 286 (882)
+.|..|++++..+......+...
T Consensus 373 ~~d~~i~l~~~e~~~dr~lise~--------------------------------------------------------- 395 (519)
T KOG0293|consen 373 TVDKKIRLYNREARVDRGLISEE--------------------------------------------------------- 395 (519)
T ss_pred ecccceeeechhhhhhhcccccc---------------------------------------------------------
Confidence 99999999998654332211111
Q ss_pred eeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCC
Q 002782 287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 366 (882)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 366 (882)
.+|.+...+ .++
T Consensus 396 -------------------------------------------------------------------~~its~~iS-~d~ 407 (519)
T KOG0293|consen 396 -------------------------------------------------------------------QPITSFSIS-KDG 407 (519)
T ss_pred -------------------------------------------------------------------CceeEEEEc-CCC
Confidence 122222222 245
Q ss_pred cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEE
Q 002782 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 446 (882)
Q Consensus 367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 446 (882)
+++.+.-.+..+.+||++....++.+.||...-.-+..||--.+..++++|+.|+.|+||+..+++++.++.+|...|.+
T Consensus 408 k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNc 487 (519)
T KOG0293|consen 408 KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNC 487 (519)
T ss_pred cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeE
Confidence 55555566678888888888888888999888777777777666667999999999999999999999999999999999
Q ss_pred EEEccCCCcEEEEeeCCCeEEEEecCC
Q 002782 447 VAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (882)
Q Consensus 447 v~~s~~~~~~l~s~~~dg~i~~wd~~~ 473 (882)
++|+|..+.++|+++.||+|++|....
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999999999999998653
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.7e-33 Score=253.29 Aligned_cols=295 Identities=24% Similarity=0.453 Sum_probs=245.6
Q ss_pred eeeeecCCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCC---CeeEEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 002782 52 IKSTIEGGSDTITALALSPD-DKLLFSSGHSREIRVWDLST---LKCLRSW-KGHDGPAIGMACHPSGGLLATAGADRKV 126 (882)
Q Consensus 52 ~~~~l~~~~~~I~~l~~spd-~~~las~~~dg~i~iwd~~~---~~~~~~~-~~h~~~V~~l~fs~~~~~lasg~~dg~v 126 (882)
.++.+++|.+.|..+||+|- |..||+++.|..|++|+... ..+...+ .+|+..|.+++|+|.|++||+|+.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45788999999999999998 89999999999999999984 3444444 4699999999999999999999999999
Q ss_pred EEEECCCC--eEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCC---CeEEEEecCcccceEEEEEccCCC
Q 002782 127 LVWDVDGG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA---KKCVATLDKHFSRVTSMAITSDGS 201 (882)
Q Consensus 127 ~vwd~~~~--~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~---~~~~~~l~~h~~~v~~l~~s~~~~ 201 (882)
.||.-..+ +++..+.||...|.+++|+++|.. ||+++.|..|-||.... -.+...++.|...|..+.|+|...
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~--LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNY--LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCE--EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 99987654 688999999999999999998765 99999999999999874 358889999999999999999999
Q ss_pred EEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEEC
Q 002782 202 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281 (882)
Q Consensus 202 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~ 281 (882)
+|++++.|++|++|+-...
T Consensus 164 lL~S~SYDnTIk~~~~~~d------------------------------------------------------------- 182 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDD------------------------------------------------------------- 182 (312)
T ss_pred eeEEeccCCeEEEEeecCC-------------------------------------------------------------
Confidence 9999999999999974310
Q ss_pred CCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEE
Q 002782 282 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF 361 (882)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 361 (882)
T Consensus 183 -------------------------------------------------------------------------------- 182 (312)
T KOG0645|consen 183 -------------------------------------------------------------------------------- 182 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeeccc
Q 002782 362 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 441 (882)
Q Consensus 362 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 441 (882)
....+..++.+|...|.+++ |.+.|.. +++++.|++++||...+. ....|.
T Consensus 183 ----------------------ddW~c~~tl~g~~~TVW~~~--F~~~G~r-l~s~sdD~tv~Iw~~~~~----~~~~~s 233 (312)
T KOG0645|consen 183 ----------------------DDWECVQTLDGHENTVWSLA--FDNIGSR-LVSCSDDGTVSIWRLYTD----LSGMHS 233 (312)
T ss_pred ----------------------CCeeEEEEecCccceEEEEE--ecCCCce-EEEecCCcceEeeeeccC----cchhcc
Confidence 11234457778888888888 8898987 999999999999986532 123577
Q ss_pred ccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC-CcEEEEEcCCCcEEE
Q 002782 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACV 520 (882)
Q Consensus 442 ~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~s~dg~i~i 520 (882)
..+..++|. ++ .+++++.|+.|++|.-..... .+.-.........|+..|++++|.|. ..+|++|+.||.|++
T Consensus 234 r~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d---~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 234 RALYDVPWD-NG--VIASGGGDDAIRLFKESDSPD---EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred cceEeeeec-cc--ceEeccCCCEEEEEEecCCCC---CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 899999998 43 699999999999998663211 11111123345679999999999994 789999999999999
Q ss_pred EeCC
Q 002782 521 WRLP 524 (882)
Q Consensus 521 wd~~ 524 (882)
|.+.
T Consensus 308 W~l~ 311 (312)
T KOG0645|consen 308 WELE 311 (312)
T ss_pred EEec
Confidence 9864
No 45
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.3e-31 Score=270.78 Aligned_cols=536 Identities=16% Similarity=0.141 Sum_probs=374.3
Q ss_pred ceEEccCCCEEEEEeCC-eEEEEEcCCCc-eeeeecCC-CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 002782 24 PLVVSSDGSFIACACGE-SINIVDLSNAS-IKSTIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~-~~~~l~~~-~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~ 100 (882)
++|+|.+.+.||++-.+ .|.||++..+- +...+.|+ ...|.+++|++ +..|.+.+-+|.|.-||+.++++......
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~ 108 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDS 108 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecC
Confidence 89999999999988765 89999998764 44666666 45799999995 55688999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC
Q 002782 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (882)
Q Consensus 101 h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~--~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~ 178 (882)
..++|.+++.+|.+..++.|+.||.+..++...+...+. |....++|.++.|+|++.. +++|+.||.|++||..++
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~--i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK--IAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE--EEecccCceEEEEEcCCC
Confidence 999999999999999999999999888888888776543 3345689999999998876 999999999999999998
Q ss_pred eEEEEec-------C-cccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCccccccc
Q 002782 179 KCVATLD-------K-HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (882)
Q Consensus 179 ~~~~~l~-------~-h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (882)
..+.... . ..--|+++.|-.++ .+++|...|.|.+||...+..++.+...
T Consensus 187 ~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h--------------------- 244 (691)
T KOG2048|consen 187 QTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH--------------------- 244 (691)
T ss_pred ceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh---------------------
Confidence 8766221 1 22357777777554 6788888888888887766655443322
Q ss_pred chhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEE
Q 002782 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (882)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 330 (882)
...+.+++..++++.+++.+.|+.+..
T Consensus 245 -----------------------------------------------------~adVl~Lav~~~~d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 245 -----------------------------------------------------DADVLALAVADNEDRVFSAGVDPKIIQ 271 (691)
T ss_pred -----------------------------------------------------hcceeEEEEcCCCCeEEEccCCCceEE
Confidence 134556666677778888888888888
Q ss_pred EEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCc-ceEEeeeeeecC
Q 002782 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE-IVLCLDTCALSS 409 (882)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 409 (882)
|...+... +.........|...+.+++..+. .++.|+.|..+.+-.....+...-. .+.. +-.+.. ....
T Consensus 272 ~~~~~~~~---~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~-~~~~~p~~~~v--~~a~ 342 (691)
T KOG2048|consen 272 YSLTTNKS---EWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHR-QKNLFPASDRV--SVAP 342 (691)
T ss_pred EEecCCcc---ceeeeccccCCcccceeeeeecc---eEEecceeeEEEEccccccCchhhh-cccccccccee--ecCc
Confidence 87776543 24445566678888999998764 8888888888887665442211111 0100 000110 1112
Q ss_pred CCEEEEEeecCCeEEEEeCCCce---------EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCC
Q 002782 410 GKILIVTGSKDNSVRLWDSESRC---------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ 480 (882)
Q Consensus 410 ~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 480 (882)
.++ +..--.+..+.+|.+.+.. +..........|.+.+.+|+|+ + ++-+.=..+++|.+....
T Consensus 343 ~~~-L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~-~-Ia~st~~~~~iy~L~~~~----- 414 (691)
T KOG2048|consen 343 ENR-LLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGN-L-IAISTVSRTKIYRLQPDP----- 414 (691)
T ss_pred cce-EEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCC-E-EEEeeccceEEEEeccCc-----
Confidence 222 3333445566677665541 1222233456799999999998 3 444444567888876432
Q ss_pred cccccchhhhhhcCCCeeEEEEcCCCcEEEEEc-CCCcEEEEeCCCc--eeEEEEe--cccCceEEEEEcCCCCEEEEee
Q 002782 481 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDL--VSVVTFR--GHKRGIWSVEFSPVDQVVITAS 555 (882)
Q Consensus 481 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s-~dg~i~iwd~~~~--~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~ 555 (882)
..............-+...+.|+-|++.++.++ .+..+.++++.+. +.+..+. +...+|..+..||+|++||+.+
T Consensus 415 ~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~ 494 (691)
T KOG2048|consen 415 NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS 494 (691)
T ss_pred ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe
Confidence 111112222222334567888998888888777 6677888877654 2222222 2456799999999999999999
Q ss_pred CCCcEEEEecCCCceeeEeecCcCCEEEEEEE-eCCCEEEEeecCCeEEEEEcCCCee-----------EEEeccCCCce
Q 002782 556 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFL-TRGAQIVSCGADGLVKLWTVRTGEC-----------IATYDKHEDKI 623 (882)
Q Consensus 556 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~h~~~v 623 (882)
.+|.|.+|++.+++.......-...++.++|+ ++.+.|+.+..|+.+.-||+...+. -.........+
T Consensus 495 t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~ 574 (691)
T KOG2048|consen 495 TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGI 574 (691)
T ss_pred ccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCC
Confidence 99999999999887655554455889999999 4667899999999999999842211 11112234677
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782 624 WALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (882)
Q Consensus 624 ~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 654 (882)
..+.|+|..+..+..-+.+-+.+.|..-.-.
T Consensus 575 ~gisfd~~n~s~~~~~~a~w~~~id~~~~lp 605 (691)
T KOG2048|consen 575 PGISFDPKNSSRFIVYDAHWSCLIDFSLPLP 605 (691)
T ss_pred ceEEeCCCCccEEEEEcCcEEEEEecCCCCC
Confidence 8888887766555555556667766654433
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.1e-35 Score=283.93 Aligned_cols=284 Identities=25% Similarity=0.411 Sum_probs=247.2
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 002782 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY 139 (882)
Q Consensus 60 ~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~ 139 (882)
.-+|..+.|.|+|+.|++|+..|.+.+|+..+...-..+..|+.+|.+|.|+++|.++++|+.+|.|++|+..-......
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 45799999999999999999999999999865554455678999999999999999999999999999999865543333
Q ss_pred eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 002782 140 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (882)
Q Consensus 140 ~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 219 (882)
...|...|.+++|+|++.. ++++++||+|+|||....+.-..+.+|.-.|.++.|+|....++++|.|..|++||.++
T Consensus 176 ~ahh~eaIRdlafSpnDsk--F~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSK--FLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred hHhhhhhhheeccCCCCce--eEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 3345599999999997665 99999999999999999998889999999999999999999999999998888887654
Q ss_pred ceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeec
Q 002782 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299 (882)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~ 299 (882)
++
T Consensus 254 g~------------------------------------------------------------------------------ 255 (464)
T KOG0284|consen 254 GS------------------------------------------------------------------------------ 255 (464)
T ss_pred cc------------------------------------------------------------------------------
Confidence 43
Q ss_pred cCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEE
Q 002782 300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379 (882)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~ 379 (882)
T Consensus 256 -------------------------------------------------------------------------------- 255 (464)
T KOG0284|consen 256 -------------------------------------------------------------------------------- 255 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEE
Q 002782 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459 (882)
Q Consensus 380 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s 459 (882)
|+.++.+|...|..+. |.+++++ |++++.|..++++|+.+.+.+..+++|...++++.|+|-...+|.+
T Consensus 256 --------cl~tlh~HKntVl~~~--f~~n~N~-Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 256 --------CLATLHGHKNTVLAVK--FNPNGNW-LLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred --------hhhhhhhccceEEEEE--EcCCCCe-eEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceee
Confidence 3335666777888887 8888876 9999999999999999988899999999999999999998889999
Q ss_pred eeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC
Q 002782 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (882)
Q Consensus 460 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~ 523 (882)
|+.||.|..|.+....+ ....-.+|...|.+++|+|-|.+||+|+.|.++++|.-
T Consensus 325 gg~Dgsvvh~~v~~~~p---------~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEP---------LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccCCCceEEEecccccc---------ccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99999999999873321 33445789999999999999999999999999999974
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5e-34 Score=269.53 Aligned_cols=292 Identities=24% Similarity=0.431 Sum_probs=267.1
Q ss_pred eeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCC
Q 002782 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421 (882)
Q Consensus 342 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 421 (882)
.....+.+.||.+.|.++++-| .+.+|++|+.|+.+.|||+.+++...++.||...+..++ +++...+ +++++.|+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~va--vS~rHpY-lFs~gedk 215 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVA--VSKRHPY-LFSAGEDK 215 (460)
T ss_pred cceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeee--ecccCce-EEEecCCC
Confidence 3455677889999999999988 589999999999999999999999999999999999998 7777776 99999999
Q ss_pred eEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEE
Q 002782 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (882)
Q Consensus 422 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (882)
.|+.||+...+.++.+.+|-+.|.+++.+|... .+++|+.|.++++||+++.. ....+.+|..+|.++.
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~----------~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA----------SVHVLSGHTNPVASVM 284 (460)
T ss_pred eeEEEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccc----------eEEEecCCCCcceeEE
Confidence 999999999999999999999999999999876 89999999999999998653 5677889999999999
Q ss_pred EcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCE
Q 002782 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (882)
Q Consensus 502 ~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 581 (882)
+.|-+..+++||.|++|++||+..++...++..|+..|.+++.+|....+|+++.| .|+-|++..|..+..+.+|..-|
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ii 363 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAII 363 (460)
T ss_pred eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccccee
Confidence 99988899999999999999999999999999999999999999999999999986 59999999999999999999999
Q ss_pred EEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec--------cCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 582 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~ 650 (882)
+.++...|| ++++|+.+|.+.+||.++|-..+..+ ..+..|.+.+|...|..|+||..|.+|++|+-.
T Consensus 364 ntl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 364 NTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred eeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 999998775 88999999999999999987665542 134678999999999999999999999999754
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.1e-35 Score=288.59 Aligned_cols=294 Identities=22% Similarity=0.438 Sum_probs=247.2
Q ss_pred ceeeeecCCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 002782 51 SIKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLST-LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV 128 (882)
Q Consensus 51 ~~~~~l~~~~~~I~~l~~sp-d~~~las~~~dg~i~iwd~~~-~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~v 128 (882)
+.++.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|..++|+++|..+.+++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45688899999999999999 889999999999999999976 8999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeC
Q 002782 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (882)
Q Consensus 129 wd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~ 208 (882)
||+++|+++..+. ....++|+.|+|++ ...+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.+.
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 9999999999887 45678999999997 568999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeee
Q 002782 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (882)
Q Consensus 209 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~ 288 (882)
|+.+++|+......++.+...+
T Consensus 363 dks~riWe~~~~v~ik~i~~~~---------------------------------------------------------- 384 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPE---------------------------------------------------------- 384 (503)
T ss_pred CccEEEEEcCCCccchhhcchh----------------------------------------------------------
Confidence 9999999987654433221111
Q ss_pred ecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcE
Q 002782 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (882)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 368 (882)
......+...|. +.+
T Consensus 385 ---------------~hsmP~~~~~P~--------------------------------------------------~~~ 399 (503)
T KOG0282|consen 385 ---------------MHTMPCLTLHPN--------------------------------------------------GKW 399 (503)
T ss_pred ---------------hccCcceecCCC--------------------------------------------------CCe
Confidence 011222333344 444
Q ss_pred EEEEEcCCcEEEEeCCC---ceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEE
Q 002782 369 LAVATNIEQVQVYDLSS---MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG 445 (882)
Q Consensus 369 l~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 445 (882)
++.-+.++.|.+|.+.. ......+.||..+-.++.+.++|+|.. |++|..||.+.+||..+.+.+..+.+|.+++.
T Consensus 400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci 478 (503)
T KOG0282|consen 400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI 478 (503)
T ss_pred ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhhhhhhccccCCcceE
Confidence 44444555555554332 122335677776666666669999998 99999999999999999999999999999999
Q ss_pred EEEEccCCCcEEEEeeCCCeEEEEe
Q 002782 446 AVAFSKKLQNFLVSGSSDHTIKVWS 470 (882)
Q Consensus 446 ~v~~s~~~~~~l~s~~~dg~i~~wd 470 (882)
.+.|+|.....+++++.||.|++|+
T Consensus 479 ~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEecCCCcceeEecccCceeEecC
Confidence 9999999888999999999999996
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.1e-33 Score=257.99 Aligned_cols=288 Identities=27% Similarity=0.446 Sum_probs=245.8
Q ss_pred eeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL-STLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (882)
Q Consensus 54 ~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~-~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~ 132 (882)
-.+.||.+.|..+.|+|+|.++|+|+.|..|.+|++ ..-+-...+++|++.|..+.|.+|+..|++++.|.+|++||++
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence 456799999999999999999999999999999995 4556677888999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeE
Q 002782 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVV 212 (882)
Q Consensus 133 ~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i 212 (882)
+|+++..+++|...|..+.-+.- ...++.+|+.||++++||+++..+++++.. .-+++++.|..++..+++|+-|+.|
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rr-g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRR-GPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred cceeeehhccccceeeecCcccc-CCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCce
Confidence 99999999999999999984333 346788999999999999999998887743 4579999999999999999999999
Q ss_pred EEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCC
Q 002782 213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (882)
Q Consensus 213 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~ 292 (882)
++||++.....
T Consensus 199 kvWd~r~~d~~--------------------------------------------------------------------- 209 (338)
T KOG0265|consen 199 KVWDLRKNDGL--------------------------------------------------------------------- 209 (338)
T ss_pred eeeccccCcce---------------------------------------------------------------------
Confidence 99998654322
Q ss_pred ceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEE
Q 002782 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (882)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 372 (882)
..+.||.+.|+.+..++ ++..+.+-
T Consensus 210 ------------------------------------------------------~~lsGh~DtIt~lsls~-~gs~llsn 234 (338)
T KOG0265|consen 210 ------------------------------------------------------YTLSGHADTITGLSLSR-YGSFLLSN 234 (338)
T ss_pred ------------------------------------------------------EEeecccCceeeEEecc-CCCccccc
Confidence 23456667777777665 66777788
Q ss_pred EcCCcEEEEeCCC----ceeeeeeeCCC--cceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEE
Q 002782 373 TNIEQVQVYDLSS----MSCSYVLAGHS--EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 446 (882)
Q Consensus 373 ~~~~~i~i~d~~~----~~~~~~~~~~~--~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 446 (882)
+.|..+++||... .+++..+.+|. -...-+.+.++|++.. +.+|+.|..+++||......+..+.+|.+.|.+
T Consensus 235 sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~ 313 (338)
T KOG0265|consen 235 SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNE 313 (338)
T ss_pred cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc-cccccccceEEEeecccccEEEEcCCcceeEEE
Confidence 8889999999763 45566777654 3455555558899887 999999999999999999999999999999999
Q ss_pred EEEccCCCcEEEEeeCCCeEEEE
Q 002782 447 VAFSKKLQNFLVSGSSDHTIKVW 469 (882)
Q Consensus 447 v~~s~~~~~~l~s~~~dg~i~~w 469 (882)
+.|+|..+ ++.+++.|++|.+=
T Consensus 314 ~~Fhp~e~-iils~~sdk~i~lg 335 (338)
T KOG0265|consen 314 VDFHPTEP-IILSCSSDKTIYLG 335 (338)
T ss_pred eeecCCCc-EEEEeccCceeEee
Confidence 99999977 89999999998763
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.9e-32 Score=246.72 Aligned_cols=290 Identities=26% Similarity=0.472 Sum_probs=248.6
Q ss_pred eeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC---ceeeeee-eCCCcceEEeeeeeecCCCEEEEEee
Q 002782 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---MSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGS 418 (882)
Q Consensus 343 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~ 418 (882)
+.....+.+|.+.+..+++.|..+..|++++.|..|++|+... ..+...+ .+|...|.+++ ++|.|++ |++|+
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvA--wsp~g~~-La~aS 80 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVA--WSPHGRY-LASAS 80 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeee--ecCCCcE-EEEee
Confidence 3445677899999999999997688999999999999999984 4444444 37999999999 9999996 99999
Q ss_pred cCCeEEEEeCCC--ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCC
Q 002782 419 KDNSVRLWDSES--RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496 (882)
Q Consensus 419 ~dg~i~iwd~~~--~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (882)
-|.++.||.-.. .+++..+.+|...|.+++|+++|. +|++++.|+.|-+|.+.... ......++..|..+
T Consensus 81 FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~dedd-------Efec~aVL~~HtqD 152 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDD-------EFECIAVLQEHTQD 152 (312)
T ss_pred ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCC-------cEEEEeeecccccc
Confidence 999999998664 468889999999999999999987 99999999999999988442 34477888999999
Q ss_pred eeEEEEcCCCcEEEEEcCCCcEEEEeCC---CceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeE
Q 002782 497 INSLAVAPNDSLVCTGSQDRTACVWRLP---DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (882)
Q Consensus 497 i~~~~~s~~~~~la~~s~dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 573 (882)
|..+.|+|...+|+++++|.+|++|+-. +-.+..++.+|...|++++|+|.|..|++++.|++|+||...+.
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----- 227 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----- 227 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----
Confidence 9999999999999999999999999876 34788999999999999999999999999999999999986522
Q ss_pred ee-cCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCC------eeEE-EeccCCCceEEEEEcCC-CCEEEEEeCCCCE
Q 002782 574 FE-GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG------ECIA-TYDKHEDKIWALAVGKK-TEMFATGGSDALV 644 (882)
Q Consensus 574 ~~-~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~------~~~~-~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i 644 (882)
+. .|...+..+.|. ...|+|++.|+.|++|.-..+ +.+. .-..|...|+++.|.|. .++|++|+.||.+
T Consensus 228 ~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v 305 (312)
T KOG0645|consen 228 LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIV 305 (312)
T ss_pred cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceE
Confidence 22 277889999998 458999999999999976543 1111 22468899999999995 7799999999999
Q ss_pred EEEECC
Q 002782 645 NLWHDS 650 (882)
Q Consensus 645 ~iw~~~ 650 (882)
++|.+.
T Consensus 306 ~~W~l~ 311 (312)
T KOG0645|consen 306 NFWELE 311 (312)
T ss_pred EEEEec
Confidence 999864
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.1e-34 Score=269.64 Aligned_cols=287 Identities=25% Similarity=0.500 Sum_probs=246.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeE
Q 002782 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (882)
Q Consensus 101 h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~ 180 (882)
....|.|+.++. ..+++|..|.+|+|||..+-.++..+.||++.|.|+.|.. .++++|+.|.+|++||++++++
T Consensus 196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~----rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE----RVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred cCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc----eEEEecCCCceEEEEeccCCch
Confidence 456899998864 4699999999999999999999999999999999999953 4799999999999999999999
Q ss_pred EEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccc
Q 002782 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 260 (882)
Q Consensus 181 ~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (882)
+.++-+|...|..+.|+. .++++++.|.++.+||+....
T Consensus 270 l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps--------------------------------------- 308 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT--------------------------------------- 308 (499)
T ss_pred hhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCch---------------------------------------
Confidence 999999999999999974 489999999999999986432
Q ss_pred cccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccc
Q 002782 261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK 340 (882)
Q Consensus 261 ~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 340 (882)
T Consensus 309 -------------------------------------------------------------------------------- 308 (499)
T KOG0281|consen 309 -------------------------------------------------------------------------------- 308 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecC
Q 002782 341 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD 420 (882)
Q Consensus 341 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 420 (882)
...+.+.+.||...|..+.| +++++++++.|.+|++|+..++.+++++.+|...|.|+. -.++ ++++|+.|
T Consensus 309 -~it~rrVLvGHrAaVNvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ----Yr~r-lvVSGSSD 379 (499)
T KOG0281|consen 309 -DITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ----YRDR-LVVSGSSD 379 (499)
T ss_pred -HHHHHHHHhhhhhheeeecc---ccceEEEecCCceEEEEeccceeeehhhhcccccceehh----ccCe-EEEecCCC
Confidence 12233556788888888888 566999999999999999999999999999999999986 3455 49999999
Q ss_pred CeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEE
Q 002782 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 500 (882)
Q Consensus 421 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 500 (882)
.+|++||+..|.+++.+.+|..-|.++.|... .+++|+.||+|++||+....... .+....+......|.+.|..+
T Consensus 380 ntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpr-a~~~~~Cl~~lv~hsgRVFrL 455 (499)
T KOG0281|consen 380 NTIRLWDIECGACLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPR-APASTLCLRTLVEHSGRVFRL 455 (499)
T ss_pred ceEEEEeccccHHHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCCc-ccccchHHHhhhhccceeEEE
Confidence 99999999999999999999999999999865 59999999999999998764321 222333566677899999999
Q ss_pred EEcCCCcEEEEEcCCCcEEEEeCCCceeE
Q 002782 501 AVAPNDSLVCTGSQDRTACVWRLPDLVSV 529 (882)
Q Consensus 501 ~~s~~~~~la~~s~dg~i~iwd~~~~~~~ 529 (882)
.| |...+++++.|.+|.|||+.++.+.
T Consensus 456 QF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 456 QF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 98 4568999999999999999877554
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-32 Score=283.88 Aligned_cols=344 Identities=23% Similarity=0.463 Sum_probs=280.0
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC
Q 002782 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (882)
Q Consensus 97 ~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~ 176 (882)
.|...+..|..++|+|...++.++-..|.|.+||..-+.+++.|..|.++|..++|+|.. .++++|++|..|+||++.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q--plFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ--PLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC--CeEEecCCccEEEEEecc
Confidence 344556889999999999999999999999999999999999999999999999999965 459999999999999999
Q ss_pred CCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhh
Q 002782 177 AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 256 (882)
Q Consensus 177 ~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (882)
+.+|+.++.+|-..|..+.|++.-.++++++.|.+|++|++.+..
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~----------------------------------- 126 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK----------------------------------- 126 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-----------------------------------
Confidence 999999999999999999999999999999999999998875432
Q ss_pred hccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccc
Q 002782 257 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 336 (882)
Q Consensus 257 ~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 336 (882)
T Consensus 127 -------------------------------------------------------------------------------- 126 (1202)
T KOG0292|consen 127 -------------------------------------------------------------------------------- 126 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEE
Q 002782 337 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT 416 (882)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 416 (882)
++..+.||...|.|.. |.|.... +++
T Consensus 127 ---------------------------------------------------~iavltGHnHYVMcAq--FhptEDl-IVS 152 (1202)
T KOG0292|consen 127 ---------------------------------------------------CIAVLTGHNHYVMCAQ--FHPTEDL-IVS 152 (1202)
T ss_pred ---------------------------------------------------eEEEEecCceEEEeec--cCCccce-EEE
Confidence 3335667777787777 7776665 888
Q ss_pred eecCCeEEEEeCCC--------c---------------------eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEE
Q 002782 417 GSKDNSVRLWDSES--------R---------------------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK 467 (882)
Q Consensus 417 ~~~dg~i~iwd~~~--------~---------------------~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~ 467 (882)
++-|.+||+||+.. + -....+.+|...|.-++|+|.-+ ++++|+.|..|+
T Consensus 153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVK 231 (1202)
T KOG0292|consen 153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVK 231 (1202)
T ss_pred ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceee
Confidence 88888888888642 1 12235679999999999999877 899999999999
Q ss_pred EEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCC
Q 002782 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 547 (882)
Q Consensus 468 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~ 547 (882)
+|.++.. +.-...+..+|...|.++-|+|...++++.+.|++|++||+...+.+.+++......|.++-+|.
T Consensus 232 lWrmnet--------KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~ 303 (1202)
T KOG0292|consen 232 LWRMNET--------KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPE 303 (1202)
T ss_pred EEEeccc--------cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCC
Confidence 9998754 22355677899999999999999999999999999999999999999999988899999999999
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe--eEEEeccC---CCc
Q 002782 548 DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIATYDKH---EDK 622 (882)
Q Consensus 548 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h---~~~ 622 (882)
.+++++|. |+-+.||-++...+. +.-+++.|+-.- |..|+-+|+.+.+ .+..+... ..+
T Consensus 304 lNLfAAgH-DsGm~VFkleRErpa--------------~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~ 367 (1202)
T KOG0292|consen 304 LNLFAAGH-DSGMIVFKLERERPA--------------YAVNGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQP 367 (1202)
T ss_pred cceeeeec-CCceEEEEEcccCce--------------EEEcCCEEEEEc-cceEEeeeccccccceeEeccCCCcccCC
Confidence 99887765 455777776533222 112234444443 7888999988754 33344322 356
Q ss_pred eEEEEEcCCCCEEE
Q 002782 623 IWALAVGKKTEMFA 636 (882)
Q Consensus 623 v~~l~~s~~~~~l~ 636 (882)
+.++.++|....+.
T Consensus 368 ~~smsYNpae~~vl 381 (1202)
T KOG0292|consen 368 PRSLSYNPAENAVL 381 (1202)
T ss_pred cceeeeccccCeEE
Confidence 77788888655443
No 53
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-29 Score=259.41 Aligned_cols=495 Identities=17% Similarity=0.209 Sum_probs=352.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 002782 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CLRSWKGH-DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC 136 (882)
Q Consensus 59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~-~~~~~~~h-~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~ 136 (882)
-..+|+|+|||.+.+.||++-.+|.|-+|++..+- +...+.++ +..|.+++|++ +.+|.+.+.+|.|.-||+.++++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence 35689999999999999999999999999998753 44556664 57899999994 55788888999999999999999
Q ss_pred EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEE--EecCcccceEEEEEccCCCEEEEEeCCCeEEE
Q 002782 137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA--TLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 214 (882)
Q Consensus 137 ~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~--~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 214 (882)
...+....+.|++++.+|.++. ++.|++||.+..++...++... .+....+.|.++.|+|++..+++|+.||.|++
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~--l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTI--LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred eEEecCCCcceeEEEeCCccce--EEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 9999999999999999998765 9999999988888888877654 34556789999999999999999999999999
Q ss_pred EecCCceeeeeecC-----c----ceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCce
Q 002782 215 WDLRDYSCKLTVPT-----Y----EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285 (882)
Q Consensus 215 wd~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~ 285 (882)
||...+..+..... . .-+-++.+..++ .+++|...|+|.+||...+.
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~------------------------tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS------------------------TIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecC------------------------cEEEecCCceEEEEcccCcc
Confidence 99998775541110 0 011222222221 35555555555555554431
Q ss_pred eeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCC
Q 002782 286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE 365 (882)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 365 (882)
+.....-|...|.+++..+ +
T Consensus 237 -----------------------------------------------------------LiqS~~~h~adVl~Lav~~-~ 256 (691)
T KOG2048|consen 237 -----------------------------------------------------------LIQSHSCHDADVLALAVAD-N 256 (691)
T ss_pred -----------------------------------------------------------hhhhhhhhhcceeEEEEcC-C
Confidence 2233445777888888765 6
Q ss_pred CcEEEEEEcCCcEEEEeCCCcee----eeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeeccc
Q 002782 366 EQYLAVATNIEQVQVYDLSSMSC----SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 441 (882)
Q Consensus 366 ~~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 441 (882)
++.+.+++-|+.+.-|...+... ......|...+.+++ ..++ .+++|+.|..+.+-........... .+.
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a--v~~~---~l~sgG~d~~l~i~~s~~~~~~~h~-~~~ 330 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA--VIEN---ALISGGRDFTLAICSSREFKNMDHR-QKN 330 (691)
T ss_pred CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee--eecc---eEEecceeeEEEEccccccCchhhh-ccc
Confidence 67888888899999888776543 223457888899987 5554 4999999998887654331111000 010
Q ss_pred ccE-E-EEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEE
Q 002782 442 GAV-G-AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519 (882)
Q Consensus 442 ~~v-~-~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~ 519 (882)
... . -+...|. .+++.--.+..+.+|.+.......+.... ............|.|.++||+|+++|.++- ...+
T Consensus 331 ~~p~~~~v~~a~~--~~L~~~w~~h~v~lwrlGS~~~~g~~~~~-~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~ 406 (691)
T KOG2048|consen 331 LFPASDRVSVAPE--NRLLVLWKAHGVDLWRLGSVILQGEYNYI-HLLKLFTKEKENISCAAISPDGNLIAISTV-SRTK 406 (691)
T ss_pred cccccceeecCcc--ceEEEEeccccccceeccCcccccccChh-hheeeecCCccceeeeccCCCCCEEEEeec-cceE
Confidence 000 0 1122222 23454455666777777654222111111 122222334567999999999999999864 5688
Q ss_pred EEeCCCceeEEEEe-----cccCceEEEEEcCCCCEEEEee-CCCcEEEEecCCC--ceeeEee--cCcCCEEEEEEEeC
Q 002782 520 VWRLPDLVSVVTFR-----GHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDG--SCLKTFE--GHTSSVLRASFLTR 589 (882)
Q Consensus 520 iwd~~~~~~~~~~~-----~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~--~~~~~~~--~h~~~v~~~~~s~~ 589 (882)
||.+.....+.... ....+...+.|+-|+..++.++ .+..+.++++.+. +.+..+. +-...|..+..+++
T Consensus 407 iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd 486 (691)
T KOG2048|consen 407 IYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD 486 (691)
T ss_pred EEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCC
Confidence 88886532222221 2344678889999988888887 6778888887654 3333332 34578999999999
Q ss_pred CCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEc-CCCCEEEEEeCCCCEEEEECC
Q 002782 590 GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG-KKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 590 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~dg~i~iw~~~ 650 (882)
|+||+..+.+|.|.+|++++++.-......+..|++++|+ ++.+.|+.+..|+.+.-+|+.
T Consensus 487 G~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 487 GNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred CCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 9999999999999999999988766554556889999999 466789999999999999983
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.9e-32 Score=293.55 Aligned_cols=291 Identities=33% Similarity=0.579 Sum_probs=253.9
Q ss_pred eeecCC-CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782 54 STIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (882)
Q Consensus 54 ~~l~~~-~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~--~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd 130 (882)
..+.+| ...|+++.|||+|+++++++.++.+++|+..+++ ..+.+.+|...|..++|+|+++++++++.|++|+|||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 344444 7899999999999999999999999999998888 7888899999999999999999999999999999999
Q ss_pred C-CCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782 131 V-DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (882)
Q Consensus 131 ~-~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d 209 (882)
+ ..+.++..+++|...|++++|+|++ .++++|+.|++|++||+.+++++..+.+|.+.|++++|++++.+|++++.|
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCC--CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9 6679999999999999999999987 459999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCceee--eeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceee
Q 002782 210 KVVNLWDLRDYSCK--LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (882)
Q Consensus 210 g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~ 287 (882)
+.|++||+.++... ..+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~------------------------------------------------------------- 328 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLL------------------------------------------------------------- 328 (456)
T ss_pred ccEEEEECCCCceeeeecc-------------------------------------------------------------
Confidence 99999999876521 111
Q ss_pred eecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCC--ceEEEEEeCCC
Q 002782 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE--EILDLKFLGEE 365 (882)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~ 365 (882)
.++.. .+..+.|++ +
T Consensus 329 --------------------------------------------------------------~~~~~~~~~~~~~fsp-~ 345 (456)
T KOG0266|consen 329 --------------------------------------------------------------SGAENSAPVTSVQFSP-N 345 (456)
T ss_pred --------------------------------------------------------------cCCCCCCceeEEEECC-C
Confidence 01111 355666665 8
Q ss_pred CcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeee-eeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecc-ccc
Q 002782 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT-CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGA 443 (882)
Q Consensus 366 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 443 (882)
+.++++++.++.+++||+..+.+...+.+|...+.|+.. +.++.+.. +++|+.|+.|.+||..++..+..+.+| ...
T Consensus 346 ~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~ 424 (456)
T KOG0266|consen 346 GKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSGGILQRLEGHSKAA 424 (456)
T ss_pred CcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe-EEEEeCCceEEEEeCCccchhhhhcCCCCCc
Confidence 889999999999999999999999999999887655532 23556666 999999999999999999999999999 899
Q ss_pred EEEEEEccCCCcEEEEee--CCCeEEEEecC
Q 002782 444 VGAVAFSKKLQNFLVSGS--SDHTIKVWSFD 472 (882)
Q Consensus 444 v~~v~~s~~~~~~l~s~~--~dg~i~~wd~~ 472 (882)
+..+.+++... ++++++ .|+.+++|...
T Consensus 425 ~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 425 VSDLSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence 99999999866 788887 78999999754
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.3e-31 Score=278.06 Aligned_cols=286 Identities=33% Similarity=0.569 Sum_probs=258.9
Q ss_pred eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEe
Q 002782 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (882)
Q Consensus 348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 427 (882)
.+.+|...|.++.|.+ +++++++++.+|.+.+|+..++.....+..|...+..+. +.++++. +++++.+|.+++||
T Consensus 4 ~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~-l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA--ASADGTY-LASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEE--ECCCCCE-EEEEcCCCeEEEEE
Confidence 4557889999999988 578999999999999999999888888889999988887 8888876 89999999999999
Q ss_pred CCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCc
Q 002782 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507 (882)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 507 (882)
+.+++....+..|...+.++.|++++. ++++++.|+.+.+|++.... .......|...+.+++|+|++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGK----------CLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcE----------EEEEeccCCCcEEEEEEcCcCC
Confidence 999888888889999999999999855 77888889999999987432 2333446888999999999999
Q ss_pred EEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEE
Q 002782 508 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (882)
Q Consensus 508 ~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 587 (882)
++++++.|+.|++||+.+++....+..|...+.+++|+|+++.+++++.|+.|++||+..++.+..+..|...+.++.|+
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence 99999889999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred eCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782 588 TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (882)
Q Consensus 588 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~ 648 (882)
|++.++++++.||.|++|++.+++.+..+..|...|.+++|+|++.+|++++.||.+++|+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9988888888899999999999999999999999999999999999999999999999996
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=239.39 Aligned_cols=284 Identities=19% Similarity=0.296 Sum_probs=251.1
Q ss_pred eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEE
Q 002782 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (882)
Q Consensus 347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 426 (882)
..+..+.+.|..++|.. ++++..+++++..+++||...+.++.++.+|...|..++ .+.++.. +++|+.|..+.+|
T Consensus 11 ~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~--~s~Dnsk-f~s~GgDk~v~vw 86 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAA--LSSDNSK-FASCGGDKAVQVW 86 (307)
T ss_pred eeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeecc--ccccccc-cccCCCCceEEEE
Confidence 45567888999999987 889999999999999999999999999999999999998 7777777 9999999999999
Q ss_pred eCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC
Q 002782 427 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (882)
Q Consensus 427 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (882)
|+++|+.++.+.+|.+.|+.+.|+.+.. .+++|+.|.++++||.+... .++..++......|.++.++ +
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s--------~ePiQildea~D~V~Si~v~--~ 155 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRS--------FEPIQILDEAKDGVSSIDVA--E 155 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCC--------CCccchhhhhcCceeEEEec--c
Confidence 9999999999999999999999998865 89999999999999998753 33566666677788888875 5
Q ss_pred cEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEE--E
Q 002782 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR--A 584 (882)
Q Consensus 507 ~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~--~ 584 (882)
..+++|+.||+++.||++.|.......+ .+|++++|++|+++.++++-|+++++.|-.+|+.++.+.||.+.-.. +
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 6899999999999999999987766654 57999999999999999999999999999999999999999876544 5
Q ss_pred EEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCc-eEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK-IWALAVGKKTEMFATGGSDALVNLWH 648 (882)
Q Consensus 585 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~s~~~dg~i~iw~ 648 (882)
+++.....+++|++||.|++||+.++..+..+..|... |.++.++|.-..|++++..+ +..|.
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eecee
Confidence 67777889999999999999999999999999988777 89999999988888777555 45564
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.6e-32 Score=293.68 Aligned_cols=283 Identities=27% Similarity=0.481 Sum_probs=257.4
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCce--eeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeC-C
Q 002782 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS-E 429 (882)
Q Consensus 353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~ 429 (882)
...+.++.|++ ++..++.++.++.+++|+..+.. ....+.+|...|..+. |+|++.. +++++.|+++++||+ .
T Consensus 159 ~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~--fs~d~~~-l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 159 CPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVA--FSPDGSY-LLSGSDDKTLRIWDLKD 234 (456)
T ss_pred cCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeE--ECCCCcE-EEEecCCceEEEeeccC
Confidence 56788888888 66669999999999999998777 7777889999999999 9999997 999999999999999 5
Q ss_pred CceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEE
Q 002782 430 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 509 (882)
Q Consensus 430 ~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 509 (882)
.+..+.++.+|...|++++|+|++ +++++|+.|++|++||+.++. ....+.+|...|++++|++++.+|
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~----------~~~~l~~hs~~is~~~f~~d~~~l 303 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGE----------CVRKLKGHSDGISGLAFSPDGNLL 303 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCe----------EEEeeeccCCceEEEEECCCCCEE
Confidence 668999999999999999999999 599999999999999998643 777888999999999999999999
Q ss_pred EEEcCCCcEEEEeCCCce--eEEEEecccCc--eEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCE---E
Q 002782 510 CTGSQDRTACVWRLPDLV--SVVTFRGHKRG--IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV---L 582 (882)
Q Consensus 510 a~~s~dg~i~iwd~~~~~--~~~~~~~h~~~--v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v---~ 582 (882)
++++.|+.|++||+.++. +...+.++... +++++|+|++.++++++.|+.+++||+..+.++..+.+|...+ .
T Consensus 304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 304 VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIF 383 (456)
T ss_pred EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEe
Confidence 999999999999999998 56777776655 9999999999999999999999999999999999999998853 3
Q ss_pred EEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccC-CCceEEEEEcCCCCEEEEEe--CCCCEEEEECC
Q 002782 583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-EDKIWALAVGKKTEMFATGG--SDALVNLWHDS 650 (882)
Q Consensus 583 ~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~--~dg~i~iw~~~ 650 (882)
+..+++.|.++++|+.|+.|++|++.++..+..+.+| ...+..+.++|...++++++ .|+.+++|...
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 3455778999999999999999999999999999999 89999999999999999998 79999999754
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=239.06 Aligned_cols=286 Identities=21% Similarity=0.386 Sum_probs=248.5
Q ss_pred eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 002782 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (882)
Q Consensus 52 ~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~ 131 (882)
..+.+..+.++|.++.|.-||+|.++++.|.+|++|+...|.++++..+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC--eEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--KCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (882)
Q Consensus 132 ~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~--~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d 209 (882)
.+|+....+++|.+.|+.++|+.+.. ++++|+.|..+++||..+. ++++.+......|.++..+ +..+++|+.|
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~D 164 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVD 164 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccC
Confidence 99999999999999999999988654 5999999999999998764 6888888888889998886 4578999999
Q ss_pred CeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeee
Q 002782 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 289 (882)
Q Consensus 210 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~ 289 (882)
|+++.||++.+.....
T Consensus 165 GtvRtydiR~G~l~sD---------------------------------------------------------------- 180 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSD---------------------------------------------------------------- 180 (307)
T ss_pred CcEEEEEeecceeehh----------------------------------------------------------------
Confidence 9999999876542110
Q ss_pred cCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEE
Q 002782 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 369 (882)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 369 (882)
....+|.++.|++ +++..
T Consensus 181 -------------------------------------------------------------y~g~pit~vs~s~-d~nc~ 198 (307)
T KOG0316|consen 181 -------------------------------------------------------------YFGHPITSVSFSK-DGNCS 198 (307)
T ss_pred -------------------------------------------------------------hcCCcceeEEecC-CCCEE
Confidence 0224667777776 67788
Q ss_pred EEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeeccccc-EEEEE
Q 002782 370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVA 448 (882)
Q Consensus 370 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~v~ 448 (882)
.+++-++.+++.|-.+++....+.||...-..++.|+...... +++|+.||.|.+||+.....+..+..+... +..+.
T Consensus 199 La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth-V~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~ 277 (307)
T KOG0316|consen 199 LASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH-VFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLS 277 (307)
T ss_pred EEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee-EEeccCCceEEEEEeccceeeeeeccCCceeEEeee
Confidence 8888889999999999999999999999999999888887777 999999999999999999999999888887 89999
Q ss_pred EccCCCcEEEEeeCCCeEEEEe
Q 002782 449 FSKKLQNFLVSGSSDHTIKVWS 470 (882)
Q Consensus 449 ~s~~~~~~l~s~~~dg~i~~wd 470 (882)
++|....++.+++ +.+.+|-
T Consensus 278 ~hp~~~~f~~A~~--~~~~~~~ 297 (307)
T KOG0316|consen 278 CHPTMDDFITATG--HGDLFWY 297 (307)
T ss_pred cccCccceeEecC--Cceecee
Confidence 9998775444432 3455554
No 59
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.6e-33 Score=259.97 Aligned_cols=283 Identities=23% Similarity=0.345 Sum_probs=239.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe--------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW--------KGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (882)
Q Consensus 59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~--------~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd 130 (882)
...-+-|..|||||+||++|+.||.|.+||..+|+....+ .-+..+|.|+.||.|...||+|+.||.|+||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 3456789999999999999999999999999999876544 34788999999999999999999999999999
Q ss_pred CCCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782 131 VDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (882)
Q Consensus 131 ~~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d 209 (882)
+.+|.|+.+|. .|+..|+|+.|+.|+.. +++++.|.++++.-+.+|+++..+++|.+.|+...|++||.++++++.|
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~Sq--iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQ--ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcch--hhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99999999987 89999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeee
Q 002782 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 289 (882)
Q Consensus 210 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~ 289 (882)
|+|++|+..+.+++.++....
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~----------------------------------------------------------- 390 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLG----------------------------------------------------------- 390 (508)
T ss_pred ccEEEecCcchhhhhhccCCC-----------------------------------------------------------
Confidence 999999999887766543211
Q ss_pred cCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEE
Q 002782 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 369 (882)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 369 (882)
..-+|..+-..|.+..++
T Consensus 391 --------------------------------------------------------------~d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 391 --------------------------------------------------------------TDYPVNSVILLPKNPEHF 408 (508)
T ss_pred --------------------------------------------------------------CcccceeEEEcCCCCceE
Confidence 112233444455566677
Q ss_pred EEEEcCCcEEEEeCCCceeeeeeeC----CCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEE
Q 002782 370 AVATNIEQVQVYDLSSMSCSYVLAG----HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG 445 (882)
Q Consensus 370 ~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 445 (882)
+++...+.+++.++.. +.++.+.. ..+.|.|+ .+|.|.+ +.+.+.|+.++.|...+|..-..+.-|...+-
T Consensus 409 iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~---lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~VhEkdvI 483 (508)
T KOG0275|consen 409 IVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAI---LSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVHEKDVI 483 (508)
T ss_pred EEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEE---ecCCCcE-EEEEccCcEEEEEEeecCceeeeeeccccccc
Confidence 7777777777777643 33434432 12334444 8899998 88999999999999999999999999999999
Q ss_pred EEEEccCCCcEEEEeeCCCeEEEEe
Q 002782 446 AVAFSKKLQNFLVSGSSDHTIKVWS 470 (882)
Q Consensus 446 ~v~~s~~~~~~l~s~~~dg~i~~wd 470 (882)
.++-+|. ++++++-+.||.+++|.
T Consensus 484 Gl~HHPH-qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 484 GLTHHPH-QNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccccCcc-cchhhhhcccchhhhcC
Confidence 9999997 45899999999999995
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1e-30 Score=273.16 Aligned_cols=288 Identities=35% Similarity=0.641 Sum_probs=251.9
Q ss_pred eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (882)
Q Consensus 53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~ 132 (882)
++.+.+|..+|++++|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+|+++++++++.||.|++||+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 35677899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeE
Q 002782 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVV 212 (882)
Q Consensus 133 ~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i 212 (882)
++.....+..|...|.++.|+|++ .++++++.+|.|.+||+.+++....+..|...+.++.|+|++.++++++.|+.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 988888999999999999999974 357777779999999999999999999999999999999999998888889999
Q ss_pred EEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCC
Q 002782 213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (882)
Q Consensus 213 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~ 292 (882)
++||+...+....+
T Consensus 160 ~i~d~~~~~~~~~~------------------------------------------------------------------ 173 (289)
T cd00200 160 KLWDLRTGKCVATL------------------------------------------------------------------ 173 (289)
T ss_pred EEEEccccccceeE------------------------------------------------------------------
Confidence 99998643322111
Q ss_pred ceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEE
Q 002782 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (882)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 372 (882)
..+...+.++.|.+ ++..++++
T Consensus 174 ---------------------------------------------------------~~~~~~i~~~~~~~-~~~~l~~~ 195 (289)
T cd00200 174 ---------------------------------------------------------TGHTGEVNSVAFSP-DGEKLLSS 195 (289)
T ss_pred ---------------------------------------------------------ecCccccceEEECC-CcCEEEEe
Confidence 12334566677766 55677777
Q ss_pred EcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccC
Q 002782 373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (882)
Q Consensus 373 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~ 452 (882)
+.++.+.+||+.++.....+..|...+.++. +.+++.. +++++.+|.+++||+.++.....+..|...+.+++|+|+
T Consensus 196 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~--~~~~~~~-~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (289)
T cd00200 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVA--FSPDGYL-LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD 272 (289)
T ss_pred cCCCcEEEEECCCCceecchhhcCCceEEEE--EcCCCcE-EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence 7799999999999888888888999999998 7788654 788888999999999999988888899999999999999
Q ss_pred CCcEEEEeeCCCeEEEEe
Q 002782 453 LQNFLVSGSSDHTIKVWS 470 (882)
Q Consensus 453 ~~~~l~s~~~dg~i~~wd 470 (882)
+. ++++++.|+.+++|+
T Consensus 273 ~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 273 GK-RLASGSADGTIRIWD 289 (289)
T ss_pred CC-EEEEecCCCeEEecC
Confidence 76 799999999999996
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4e-32 Score=244.32 Aligned_cols=292 Identities=20% Similarity=0.317 Sum_probs=260.8
Q ss_pred eeecccCCceEEEEEeC--CCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEE
Q 002782 347 KRLVGYNEEILDLKFLG--EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (882)
Q Consensus 347 ~~~~~~~~~i~~~~~~~--~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (882)
....||..+|.+++|++ +++-+|++++.|+.-.+-+-+++..+.++.+|.+.|.+.. ...+... .++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~--l~~na~~-aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSAT--LNKNATR-AASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeee--cCchhhh-hhhhcccchhh
Confidence 45678999999999977 7888999999999999999999999999999999998875 4444444 88899999999
Q ss_pred EEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC
Q 002782 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (882)
Q Consensus 425 iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (882)
+||.-+|..+..+. |..-|.+++|+.+.. .|++|+.++-+++||++.... +...+.+|.+.|..+.|..
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~A---------pp~E~~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKA---------PPKEISGHTGGIRTVLWCH 153 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEecccch-hhhccchHHHhhhhhccCCCC---------CchhhcCCCCcceeEEEec
Confidence 99999998887764 888999999999966 799999999999999986532 4455678999999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEE
Q 002782 505 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 584 (882)
Q Consensus 505 ~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 584 (882)
..+.+.+++.|++|++||.++++.+.++. .+.+|+++.++++|++|.++.. +.|.+||..+...++.+. -...|.+.
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs~k-~P~nV~SA 230 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKSYK-MPCNVESA 230 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecC-ceeEEeccccccceeecc-Cccccccc
Confidence 99999999999999999999999999988 6788999999999998888765 789999999999999887 44578889
Q ss_pred EEEeCCCEEEEeecCCeEEEEEcCCCeeEEEe-ccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHH
Q 002782 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (882)
Q Consensus 585 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 655 (882)
.++|+...++.|+.|+.++.||..+|+-+..+ .+|.++|.|+.|+|||..-++|+.||+|++|....++..
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999999999999999999999999998886 899999999999999999999999999999998876543
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6e-32 Score=266.32 Aligned_cols=291 Identities=20% Similarity=0.299 Sum_probs=257.9
Q ss_pred eeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC-ceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (882)
Q Consensus 344 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 422 (882)
.......||+..|.++.|+|..+.+|++++.|+.|++|++.. +.+++++.+|..+|..+. ++.+|.. +.+++-|+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~--~s~~g~~-fLS~sfD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDAS--FNNCGTS-FLSASFDRF 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhh--ccccCCe-eeeeeccee
Confidence 345678899999999999999999999999999999999876 899999999999999998 9999998 999999999
Q ss_pred EEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEE
Q 002782 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (882)
Q Consensus 423 i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (882)
+++||+++|+++..+.. ...++++.|.|++++.+++|+.|+.|+.||++.+. .......|-+.|+.+.|
T Consensus 282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k----------vvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK----------VVQEYDRHLGAILDITF 350 (503)
T ss_pred eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH----------HHHHHHhhhhheeeeEE
Confidence 99999999999987753 45788999999998899999999999999998653 56667788899999999
Q ss_pred cCCCcEEEEEcCCCcEEEEeCCCceeEEEEe-cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC---ceeeEeecCc
Q 002782 503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---SCLKTFEGHT 578 (882)
Q Consensus 503 s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~ 578 (882)
-++|+.+++.+.|++++||+.....++.... .+.-...++..+|++++++.-+.|..|.+|.+... ..-+.|+||.
T Consensus 351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 9999999999999999999998876655433 23345678999999999999999999999997543 3346788886
Q ss_pred C--CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCC-CEEEEEeCCCCEEEEE
Q 002782 579 S--SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWH 648 (882)
Q Consensus 579 ~--~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iw~ 648 (882)
. --..+.|||||.+|++|+.||.+.+||.++-+.+..+..|+..+..+.|+|.. ..+||+|.||.|++|+
T Consensus 431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 4 45678999999999999999999999999999999999999999999999965 4799999999999996
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.9e-30 Score=300.82 Aligned_cols=241 Identities=18% Similarity=0.276 Sum_probs=204.8
Q ss_pred CceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE
Q 002782 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433 (882)
Q Consensus 354 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 433 (882)
..+.+++|.+..+.++++++.||.|++||+.++.....+.+|.+.|.+++ ++|.+..++++|+.||.|++||+.++..
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~--~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSID--YSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEE--EcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 45677888887788999999999999999999999999999999999999 8764333499999999999999999988
Q ss_pred EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEc
Q 002782 434 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS 513 (882)
Q Consensus 434 ~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s 513 (882)
+..+..+ ..+.++.|++....++++|+.||.|++||+..... ......+|...|.++.|. ++.++++++
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~---------~~~~~~~h~~~V~~v~f~-~~~~lvs~s 679 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL---------PLCTMIGHSKTVSYVRFV-DSSTLVSSS 679 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc---------cceEecCCCCCEEEEEEe-CCCEEEEEE
Confidence 8877755 67899999665455899999999999999875321 223446799999999997 778999999
Q ss_pred CCCcEEEEeCCC------ceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEe-------------
Q 002782 514 QDRTACVWRLPD------LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF------------- 574 (882)
Q Consensus 514 ~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------- 574 (882)
.|++|++||+.. ..++..+.+|...+.+++|+|++.+|++|+.|+.|++|+......+..+
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~ 759 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEV 759 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccccc
Confidence 999999999974 3567889999999999999999999999999999999998765443322
Q ss_pred ecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEc
Q 002782 575 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (882)
Q Consensus 575 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 607 (882)
..|...|.+++|+|++.+|++|+.||.|+||++
T Consensus 760 ~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 760 DDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 234567999999999999999999999999986
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8.5e-31 Score=250.23 Aligned_cols=291 Identities=21% Similarity=0.361 Sum_probs=243.1
Q ss_pred cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (882)
Q Consensus 352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 431 (882)
|.+.|.++... +.++.+|+.||.+++||.. |++...+.||.+++..+++....+....+++++.|.++++|..+.+
T Consensus 104 hdDWVSsv~~~---~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 104 HDDWVSSVKGA---SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred chhhhhhhccc---CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 55555555543 6799999999999999974 6677799999999998876554444456999999999999998876
Q ss_pred eE----EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCC---------------Ccccccchhhhhh
Q 002782 432 CC----VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---------------QPMNLKAKAVVAA 492 (882)
Q Consensus 432 ~~----~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---------------~~~~~~~~~~~~~ 492 (882)
.. +....+|...|.++...+++. .+++|+.|.++++|+......... ......+..++.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 53 334559999999999999987 799999999999999433211110 1112235566789
Q ss_pred cCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCc---
Q 002782 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS--- 569 (882)
Q Consensus 493 ~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~--- 569 (882)
|..+|.++.|++ ...+++++.|.+|+.||+.++....++.+ ...+.++..+|...+|++|+.|..+++||.+++.
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 999999999998 67899999999999999999999888874 5679999999999999999999999999988762
Q ss_pred eeeEeecCcCCEEEEEEEeCCC-EEEEeecCCeEEEEEcCCCe-eEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEE
Q 002782 570 CLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647 (882)
Q Consensus 570 ~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 647 (882)
..++|.||.+.|..+.|+|... +|++++.|+++++||+++.. ++..+.+|.++|.++.|. ++.+|++||.|..|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 4578999999999999999655 67999999999999999887 999999999999999997 56689999999999998
Q ss_pred ECC
Q 002782 648 HDS 650 (882)
Q Consensus 648 ~~~ 650 (882)
.-.
T Consensus 416 ~~~ 418 (423)
T KOG0313|consen 416 KGS 418 (423)
T ss_pred ccc
Confidence 654
No 65
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=4.9e-31 Score=253.98 Aligned_cols=290 Identities=20% Similarity=0.315 Sum_probs=247.1
Q ss_pred eeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc---eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782 346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (882)
Q Consensus 346 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 422 (882)
...+..|.++|.-+.|++ ++++||+++.|.+..+|.+... +...++.+|..+|..+. |+|++++ +++++.+..
T Consensus 217 ~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~--wSPDdry-LlaCg~~e~ 292 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIM--WSPDDRY-LLACGFDEV 292 (519)
T ss_pred hhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEE--ECCCCCe-EEecCchHh
Confidence 345677999999999988 8999999999999999987644 34778899999999999 9999998 777777888
Q ss_pred EEEEeCCCceEEeeee-cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEE
Q 002782 423 VRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (882)
Q Consensus 423 i~iwd~~~~~~~~~~~-~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (882)
+.+||..+|.+...+. ++...+.+++|.|||. .+++|+.|+++..||++...... .+ ......|.+++
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~~-----W~-----gvr~~~v~dla 361 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILGN-----WE-----GVRDPKVHDLA 361 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhhc-----cc-----ccccceeEEEE
Confidence 9999999998877654 3578999999999998 58999999999999998652111 10 11124688999
Q ss_pred EcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCC-
Q 002782 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS- 580 (882)
Q Consensus 502 ~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~- 580 (882)
+++||+++++.+.|..|++++.++......+. ...+|++++.|.|++++++.-.+..+++||+.....++.+.||...
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~ 440 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH 440 (519)
T ss_pred EcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence 99999999999999999999988766554333 5678999999999999999999999999999999999999999754
Q ss_pred -EEEEEEEe-CCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCC-CEEEEEeCCCCEEEEECCC
Q 002782 581 -VLRASFLT-RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDST 651 (882)
Q Consensus 581 -v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iw~~~~ 651 (882)
+..-+|-. +..++++|+.|+.|+||+..+|+++..+.+|...|++++|+|.. .++|++|+||+|+||....
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 55556653 45799999999999999999999999999999999999999965 5789999999999998764
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=1.3e-29 Score=298.56 Aligned_cols=286 Identities=18% Similarity=0.254 Sum_probs=237.0
Q ss_pred eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCce--------eeeeeeCCCcceEEeeeeeecCCCEEEEEeec
Q 002782 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 419 (882)
Q Consensus 348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 419 (882)
.+.+|.+.|.+++|.+ +++++++|+.|+.|++|+..+.. ....+. +...+.++. +.+.....+++++.
T Consensus 478 ~~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~--~~~~~~~~las~~~ 553 (793)
T PLN00181 478 DLLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGIC--WNSYIKSQVASSNF 553 (793)
T ss_pred cccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEE--eccCCCCEEEEEeC
Confidence 3456888999999997 67899999999999999975421 111222 345677776 66654444999999
Q ss_pred CCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeE
Q 002782 420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (882)
Q Consensus 420 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (882)
||+|++||+.+++.+..+.+|.+.|++++|+|....+|++|+.|++|++||+.... ...... +...+.+
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~----------~~~~~~-~~~~v~~ 622 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV----------SIGTIK-TKANICC 622 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc----------EEEEEe-cCCCeEE
Confidence 99999999999999999999999999999998545589999999999999997542 111222 3357889
Q ss_pred EEEc-CCCcEEEEEcCCCcEEEEeCCCce-eEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCC------Ccee
Q 002782 500 LAVA-PNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD------GSCL 571 (882)
Q Consensus 500 ~~~s-~~~~~la~~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~------~~~~ 571 (882)
+.|+ ++|.+|++|+.||.|++||+.+.. ....+.+|...|.++.|. ++.+|++++.|++|++||+.. +.++
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l 701 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL 701 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence 9995 579999999999999999998765 567788999999999997 688999999999999999974 3678
Q ss_pred eEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEe-------------ccCCCceEEEEEcCCCCEEEEE
Q 002782 572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-------------DKHEDKIWALAVGKKTEMFATG 638 (882)
Q Consensus 572 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~l~~s~~~~~l~s~ 638 (882)
.++.+|...+..++|++++.+|++|+.||.|++|+...+..+..+ ..|...|.+++|+|++..|++|
T Consensus 702 ~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~ 781 (793)
T PLN00181 702 HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAA 781 (793)
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEe
Confidence 899999999999999999999999999999999998766444222 2345679999999999999999
Q ss_pred eCCCCEEEEEC
Q 002782 639 GSDALVNLWHD 649 (882)
Q Consensus 639 ~~dg~i~iw~~ 649 (882)
+.||.|+||++
T Consensus 782 ~~dG~I~i~~~ 792 (793)
T PLN00181 782 NSTGNIKILEM 792 (793)
T ss_pred cCCCcEEEEec
Confidence 99999999986
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.2e-30 Score=234.79 Aligned_cols=287 Identities=25% Similarity=0.350 Sum_probs=240.3
Q ss_pred eeecCCCccEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782 54 STIEGGSDTITALALSP---DDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (882)
Q Consensus 54 ~~l~~~~~~I~~l~~sp---d~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd 130 (882)
.+..||+.+|..++||| +|-+|++++.|+.=.+-+-++|.-+.+|.||++.|.+.+.+.+..+.|+++.|-+-+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 45678999999999985 899999999999988888899999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe-EEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-CVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (882)
Q Consensus 131 ~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~-~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d 209 (882)
.-+|..++.|. |...|..++|+.|.++ |++|+.+..++|||++..+ +...+.+|.+.|..+.|....+.+++++.|
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~~--lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd 164 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSNY--LLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD 164 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccchh--hhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence 99999999887 8999999999998776 9999999999999998654 667889999999999999999999999999
Q ss_pred CeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeee
Q 002782 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 289 (882)
Q Consensus 210 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~ 289 (882)
++||+||.+++..++++....++.++...+++. +++....
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~------------------------ilTia~g---------------- 204 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR------------------------ILTIAYG---------------- 204 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcceeeccCCC------------------------EEEEecC----------------
Confidence 999999999999888887776666655554442 2222233
Q ss_pred cCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEE
Q 002782 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 369 (882)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 369 (882)
T Consensus 205 -------------------------------------------------------------------------------- 204 (334)
T KOG0278|consen 205 -------------------------------------------------------------------------------- 204 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeee-ecccccEEEEE
Q 002782 370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVA 448 (882)
Q Consensus 370 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~v~ 448 (882)
+.|..||..+...+..+.-. ..|.+.+ ..|+... +++|+.|..++.||+.++..+..+ .+|.++|.|+.
T Consensus 205 ------ssV~Fwdaksf~~lKs~k~P-~nV~SAS--L~P~k~~-fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVr 274 (334)
T KOG0278|consen 205 ------SSVKFWDAKSFGLLKSYKMP-CNVESAS--LHPKKEF-FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVR 274 (334)
T ss_pred ------ceeEEeccccccceeeccCc-ccccccc--ccCCCce-EEecCcceEEEEEeccCCceeeecccCCCCceEEEE
Confidence 44555555444443332211 1233333 5677755 999999999999999999999886 89999999999
Q ss_pred EccCCCcEEEEeeCCCeEEEEecCCC
Q 002782 449 FSKKLQNFLVSGSSDHTIKVWSFDGL 474 (882)
Q Consensus 449 ~s~~~~~~l~s~~~dg~i~~wd~~~~ 474 (882)
|+|+|. ..++|++||+|++|.....
T Consensus 275 FSPdGE-~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 275 FSPDGE-LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ECCCCc-eeeccCCCceEEEEEecCC
Confidence 999998 7899999999999998754
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=242.43 Aligned_cols=285 Identities=21% Similarity=0.355 Sum_probs=244.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--------eecCCCcEEEEEEecCCCccEEEEEeCCCcEEE
Q 002782 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY--------FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (882)
Q Consensus 101 h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~--------~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~v 172 (882)
.+..+.|..|||||+||++|+.||.|.|||..+|+.... |.-+...|.|+.|+.|... +++|+.||.|++
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM--lAsGsqDGkIKv 289 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM--LASGSQDGKIKV 289 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH--hhccCcCCcEEE
Confidence 456788999999999999999999999999999875543 3357889999999998765 999999999999
Q ss_pred EECCCCeEEEEec-CcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccc
Q 002782 173 WDLLAKKCVATLD-KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 251 (882)
Q Consensus 173 wd~~~~~~~~~l~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (882)
|.+.+|.|++.+. .|...|+++.|+.|+..+++++.|.++++.-+.+
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-------------------------------- 337 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-------------------------------- 337 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc--------------------------------
Confidence 9999999999996 8999999999999999999999888777765443
Q ss_pred hhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEE
Q 002782 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (882)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 331 (882)
T Consensus 338 -------------------------------------------------------------------------------- 337 (508)
T KOG0275|consen 338 -------------------------------------------------------------------------------- 337 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCC
Q 002782 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (882)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 411 (882)
|++...+.||+..|+... +.++|.
T Consensus 338 ------------------------------------------------------GK~LKEfrGHsSyvn~a~--ft~dG~ 361 (508)
T KOG0275|consen 338 ------------------------------------------------------GKCLKEFRGHSSYVNEAT--FTDDGH 361 (508)
T ss_pred ------------------------------------------------------chhHHHhcCccccccceE--EcCCCC
Confidence 344446677888887777 889998
Q ss_pred EEEEEeecCCeEEEEeCCCceEEeeeec--ccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhh
Q 002782 412 ILIVTGSKDNSVRLWDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (882)
Q Consensus 412 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 489 (882)
. +++++.||+|++|+..+..|+.++.. ...+|.++..-|.++..++.+...+++.+.++...- .+....
T Consensus 362 ~-iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv--------VrsfsS 432 (508)
T KOG0275|consen 362 H-IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV--------VRSFSS 432 (508)
T ss_pred e-EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE--------Eeeecc
Confidence 8 99999999999999999999988763 556888998889888889999999999999986531 111112
Q ss_pred hhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 002782 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (882)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd 564 (882)
-...+++..+.+.||.|.++.+.+.|+.++.|...+|+...++..|...|..++-+|..+.|++-+.||.+++|.
T Consensus 433 GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 433 GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 223456777889999999999999999999999999999999999999999999999999999999999999994
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=3.4e-29 Score=228.00 Aligned_cols=295 Identities=21% Similarity=0.229 Sum_probs=245.5
Q ss_pred eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEe
Q 002782 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (882)
Q Consensus 348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 427 (882)
.+.||..++..+.|.. ++.+|.+++.|....+|-..+++.+.++.||.+.|.|++ ...+.+. +++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~D--id~~s~~-liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCD--IDWDSKH-LITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEE--ecCCcce-eeeccccceeEEEE
Confidence 4678999999999987 888999999999999999999999999999999999999 6666666 99999999999999
Q ss_pred CCCceEEeeeecccccEEEEEEccCCCcEEEEe----eCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEc
Q 002782 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG----SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (882)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~----~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (882)
+.+|+++..+. ...+|..+.|+++|...+++. +..+.|.++|++...... ....+......+.+.++.+.|+
T Consensus 81 v~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~---~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 81 VETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI---DSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred cCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh---cccCceEEecCCccceeeeeec
Confidence 99999998876 456899999999988444443 345789999998543211 1122334445567899999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCce-eEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEE
Q 002782 504 PNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL 582 (882)
Q Consensus 504 ~~~~~la~~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 582 (882)
|-+++|++|..||.|.+||+.++. .+..-+.|...|+.++++||..++++++.|.+-++||..+.++++++. -..+|+
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN 235 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVN 235 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccccc
Confidence 999999999999999999999984 455557799999999999999999999999999999999999999998 567999
Q ss_pred EEEEEeCCCEEEEeecCCe--EE------------EEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782 583 RASFLTRGAQIVSCGADGL--VK------------LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (882)
Q Consensus 583 ~~~~s~~g~~l~s~~~dg~--i~------------iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~ 648 (882)
+.+++|....++.|+.... |. +|++-..+.+..+.+|-++|++++|+|+|+..++||.||.|++..
T Consensus 236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence 9999998777777664322 22 222223345667789999999999999999999999999999986
Q ss_pred CCC
Q 002782 649 DST 651 (882)
Q Consensus 649 ~~~ 651 (882)
...
T Consensus 316 Fd~ 318 (327)
T KOG0643|consen 316 FDS 318 (327)
T ss_pred ecc
Confidence 553
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=7.1e-29 Score=267.84 Aligned_cols=279 Identities=29% Similarity=0.500 Sum_probs=247.4
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeee-eeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (882)
Q Consensus 353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 431 (882)
...+.+..+. ...+.+++.++.|.+|+..++..+.. +.||.+.|.++. +...++ .+++|+.|.++++||..+|
T Consensus 208 ~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~--~~~~~~-~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 208 DHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLA--FPSGGD-KLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cchhhhheee---cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEE--EecCCC-EEEEEecCCcEEeEecCCC
Confidence 3444555543 67899999999999999999999888 999999999996 444344 4999999999999999999
Q ss_pred eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEE
Q 002782 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (882)
Q Consensus 432 ~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 511 (882)
.+...+.+|.+.+.++...+. .+++|+.|.+|++|+++++. ...+..+|..+|+++..+ +.++++
T Consensus 282 ~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~----------~l~l~~~h~~~V~~v~~~--~~~lvs 346 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGA----------CLNLLRGHTGPVNCVQLD--EPLLVS 346 (537)
T ss_pred cEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcc----------eEEEeccccccEEEEEec--CCEEEE
Confidence 999999999999999998765 68889999999999998553 556666799999999998 789999
Q ss_pred EcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEeCC
Q 002782 512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG 590 (882)
Q Consensus 512 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~g 590 (882)
|+.|++|++||+.+++++.++.+|...|.++.+.+. ..+++|+.|++|++||+.+. +|+.++.+|..-+..+.+ .+
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~ 423 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RD 423 (537)
T ss_pred EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--cc
Confidence 999999999999999999999999999999988765 89999999999999999999 999999999998865554 57
Q ss_pred CEEEEeecCCeEEEEEcCCCeeEEEecc-CCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHHHH
Q 002782 591 AQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE 657 (882)
Q Consensus 591 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 657 (882)
++|++++.||.|++||..+++++..+.+ |...|+++++. ...+++++.||.+.+||+.+++....
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhh
Confidence 8999999999999999999999999998 67899999886 56799999999999999998876543
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=8.7e-29 Score=225.37 Aligned_cols=290 Identities=21% Similarity=0.285 Sum_probs=238.2
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 002782 55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG 134 (882)
Q Consensus 55 ~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~ 134 (882)
.+.||+.+++.+.++.+|.+|.+++.|.+..+|-..+|+.+.++.||.+.|.|+..+.+.++|++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCCCcEEEEEEecCCCccEEEEE----eCCCcEEEEECC-------CCeEEEEecCcccceEEEEEccCCCEE
Q 002782 135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSG----SDDATVRVWDLL-------AKKCVATLDKHFSRVTSMAITSDGSTL 203 (882)
Q Consensus 135 ~~~~~~~~h~~~V~~l~f~~~~~~~~l~sg----s~dg~I~vwd~~-------~~~~~~~l~~h~~~v~~l~~s~~~~~l 203 (882)
+++..++ ...+|..+.|+++++. .+++. +..+.|.++|+. +.++...+..+.+.++.+-|.|-+++|
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~-~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNL-ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcE-EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999988 5788999999998764 22222 234789999997 556788888899999999999999999
Q ss_pred EEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCC
Q 002782 204 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (882)
Q Consensus 204 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~ 283 (882)
++|..||.|..||++++.....
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~---------------------------------------------------------- 184 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVD---------------------------------------------------------- 184 (327)
T ss_pred EEecCCCcEEEEEcccCceeee----------------------------------------------------------
Confidence 9999999999999987542210
Q ss_pred ceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeC
Q 002782 284 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363 (882)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 363 (882)
....|...|.++.+++
T Consensus 185 ----------------------------------------------------------------s~~~h~~~Ind~q~s~ 200 (327)
T KOG0643|consen 185 ----------------------------------------------------------------SDEEHSSKINDLQFSR 200 (327)
T ss_pred ----------------------------------------------------------------chhhhccccccccccC
Confidence 1112445677777776
Q ss_pred CCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe-E------------EEEeCCC
Q 002782 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS-V------------RLWDSES 430 (882)
Q Consensus 364 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i------------~iwd~~~ 430 (882)
+..++++++.|.+-++||..+..++.++.. ..++++.+ .+|-....++.|+.+-. | ++|++-.
T Consensus 201 -d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aa--isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~ 276 (327)
T KOG0643|consen 201 -DRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAA--ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF 276 (327)
T ss_pred -CcceEEecccCccceeeeccceeeEEEeee-ccccccee--cccccceEEecCCceeeeeeeecccccchhhhHHHHHH
Confidence 788999999999999999999998887764 45778877 77877774444443321 1 1222222
Q ss_pred ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCC
Q 002782 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (882)
Q Consensus 431 ~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~ 473 (882)
.+.+...++|-++|++++|+|+|. ..++|++||.|++..+..
T Consensus 277 eEEigrvkGHFGPINsvAfhPdGk-sYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 277 EEEIGRVKGHFGPINSVAFHPDGK-SYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred HHHhccccccccCcceeEECCCCc-ccccCCCCceEEEEEecc
Confidence 334556789999999999999998 579999999999987654
No 72
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.2e-28 Score=222.07 Aligned_cols=278 Identities=19% Similarity=0.270 Sum_probs=244.3
Q ss_pred eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeee--eeeCCCcceEEeeeeeecCCCEEEEEeecCCeEE
Q 002782 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY--VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (882)
Q Consensus 347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (882)
+...+|...+.+++|.. ++..++.++.++.+.+|++...+... ...+|.+.|-.+. +.|....++++++.|.+|+
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~--w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLC--WDPKHPDLFATASGDKTIR 90 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhhe--eCCCCCcceEEecCCceEE
Confidence 56678889999999987 88999999999999999998775543 3568888888877 7777777799999999999
Q ss_pred EEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC
Q 002782 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (882)
Q Consensus 425 iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (882)
+||...+++........+.+ -+.|+|+|. +++.++.|..|.+.|...... .........++.++|+.
T Consensus 91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~-~~~~~~kdD~it~id~r~~~~-----------~~~~~~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENI-NITWSPDGE-YIAVGNKDDRITFIDARTYKI-----------VNEEQFKFEVNEISWNN 157 (313)
T ss_pred EEEeccCcEEEEeeccCcce-EEEEcCCCC-EEEEecCcccEEEEEecccce-----------eehhcccceeeeeeecC
Confidence 99999999988877655555 567899987 789999999999999876521 11222345678899998
Q ss_pred CCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEE
Q 002782 505 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 584 (882)
Q Consensus 505 ~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 584 (882)
++.+++.....|+|.|...+..+++.+++.|.....||.|+|+|+++|+|+.|..+.+||++.--|++.+..+.-+|..+
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTl 237 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTL 237 (313)
T ss_pred CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEE
Confidence 88888887778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCC
Q 002782 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD 641 (882)
Q Consensus 585 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 641 (882)
.|+.||++|++++.|..|-|=++.+|..+..++ ++++...++|+|...+||-++.|
T Consensus 238 SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 999999999999999999999999999999997 88999999999999999987765
No 73
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-29 Score=226.71 Aligned_cols=281 Identities=21% Similarity=0.288 Sum_probs=235.6
Q ss_pred EEEEEeCCCCcEEEEEE-------cCCcEEEEeCCCceeeeeee--CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEe
Q 002782 357 LDLKFLGEEEQYLAVAT-------NIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (882)
Q Consensus 357 ~~~~~~~~~~~~l~~~~-------~~~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 427 (882)
.++.|+|--++.|++++ ..|.+.|.++....-+.... .-.+.+..++ +++.....+++++.||++++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~--Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVA--WSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEee--ecCCCcceEEEEecCceEEEec
Confidence 56788887777777764 36889999986444444333 3456677777 6677666799999999999999
Q ss_pred CCC-ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC-C
Q 002782 428 SES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-N 505 (882)
Q Consensus 428 ~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~ 505 (882)
+.. ..++..++.|...|.++.|++..+..+++++.|++|++|+..... ...++.+|...|...+|+| .
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~----------Sv~Tf~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN----------SVQTFNGHNSCIYQAAFSPHI 159 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc----------ceEeecCCccEEEEEecCCCC
Confidence 653 457888999999999999999888788999999999999976542 5666888999999999999 5
Q ss_pred CcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcC-CCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEE
Q 002782 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLR 583 (882)
Q Consensus 506 ~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~ 583 (882)
.++++++|.|+++++||++.......+..|...+.++.|+. +...|+||+.|+.|++||++.- .++..+.+|.-.|..
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk 239 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK 239 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE
Confidence 78999999999999999987655566999999999999997 5678999999999999999875 567889999999999
Q ss_pred EEEEeCC-CEEEEeecCCeEEEEEcCCC-eeEEEeccCCCceEEEEEcC-CCCEEEEEeCCCCEEEEEC
Q 002782 584 ASFLTRG-AQIVSCGADGLVKLWTVRTG-ECIATYDKHEDKIWALAVGK-KTEMFATGGSDALVNLWHD 649 (882)
Q Consensus 584 ~~~s~~g-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iw~~ 649 (882)
+.|||.. ..|+|++.|-+++|||...+ .++.+.+.|..-|..+.||+ ++.++|+++-|+.+.||+-
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999964 57899999999999999855 46777788889999999987 5679999999999999973
No 74
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.1e-28 Score=221.18 Aligned_cols=234 Identities=16% Similarity=0.267 Sum_probs=205.8
Q ss_pred ecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeC
Q 002782 349 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428 (882)
Q Consensus 349 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 428 (882)
..||.+.|-.+++.+.....+++++.+..|++||..++++........+.+... ++|+|++ ++.++.|..|.+.|.
T Consensus 60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~---wsp~g~~-~~~~~kdD~it~id~ 135 (313)
T KOG1407|consen 60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINIT---WSPDGEY-IAVGNKDDRITFIDA 135 (313)
T ss_pred ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEE---EcCCCCE-EEEecCcccEEEEEe
Confidence 346777888899999999999999999999999999999998887766666655 8999998 999999999999999
Q ss_pred CCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcE
Q 002782 429 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 508 (882)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 508 (882)
.+.+.+...+ ....+..++|+.++. +++.....|+|.+...+. +++...+.+|.....|+.|+|+|++
T Consensus 136 r~~~~~~~~~-~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyps----------Lkpv~si~AH~snCicI~f~p~Gry 203 (313)
T KOG1407|consen 136 RTYKIVNEEQ-FKFEVNEISWNNSND-LFFLTNGLGCVEILSYPS----------LKPVQSIKAHPSNCICIEFDPDGRY 203 (313)
T ss_pred cccceeehhc-ccceeeeeeecCCCC-EEEEecCCceEEEEeccc----------cccccccccCCcceEEEEECCCCce
Confidence 9887665543 334677788886554 666667779999998764 4477788999999999999999999
Q ss_pred EEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEe
Q 002782 509 VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 588 (882)
Q Consensus 509 la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 588 (882)
+|+|+.|..+.+||++..-+.+.+..+.-+|..+.||.||++||+||.|..|-|=++++|..+..++ +.++...++|+|
T Consensus 204 fA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP 282 (313)
T KOG1407|consen 204 FATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP 282 (313)
T ss_pred EeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 888999999999
Q ss_pred CCCEEEEeecC
Q 002782 589 RGAQIVSCGAD 599 (882)
Q Consensus 589 ~g~~l~s~~~d 599 (882)
...+|+-++.|
T Consensus 283 k~~LLAyA~dd 293 (313)
T KOG1407|consen 283 KRPLLAYACDD 293 (313)
T ss_pred CCceeeEEecC
Confidence 99999888775
No 75
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.5e-28 Score=232.47 Aligned_cols=282 Identities=23% Similarity=0.419 Sum_probs=237.8
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCe
Q 002782 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG---GLLATAGADRKVLVWDVDGGF 135 (882)
Q Consensus 59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~---~~lasg~~dg~v~vwd~~~~~ 135 (882)
|.+.|.++... +++|++|+.||.+++||. .|+....+.||.++|.++++.-.+ ..+++++.|.++++|-++.+.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 78899999888 789999999999999996 688999999999999988875433 359999999999999998764
Q ss_pred E----EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC-------------------------CCeEEEEecC
Q 002782 136 C----THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-------------------------AKKCVATLDK 186 (882)
Q Consensus 136 ~----~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~-------------------------~~~~~~~l~~ 186 (882)
. ++.-+||...|.++...+++.+ +++|+.|.+|++|+.. ++.++.++.+
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr--~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTR--FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCe--EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 3 3344599999999999998876 9999999999999931 1236778899
Q ss_pred cccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceE
Q 002782 187 HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 266 (882)
Q Consensus 187 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (882)
|..+|.++.|++ ...+++++.|.+|+.||+.++..+.++.....+.++...+.. ..
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~-----------------------~L 314 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLS-----------------------KL 314 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeeccccc-----------------------ce
Confidence 999999999998 678999999999999999999988888777777777666543 26
Q ss_pred EEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeee
Q 002782 267 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 346 (882)
Q Consensus 267 ~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 346 (882)
+++++.+..+++||.+++. .....
T Consensus 315 l~~gssdr~irl~DPR~~~--------------------------------------------------------gs~v~ 338 (423)
T KOG0313|consen 315 LASGSSDRHIRLWDPRTGD--------------------------------------------------------GSVVS 338 (423)
T ss_pred eeecCCCCceeecCCCCCC--------------------------------------------------------CceeE
Confidence 7788888888888876540 12234
Q ss_pred eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCce-eeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEE
Q 002782 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (882)
Q Consensus 347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (882)
.++.||.+-|..+.++|.+..+|++++.|+.+++||+.+.. .++.+.+|.+.|.+++ +.. +.. +++|+.|.++++
T Consensus 339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vd--W~~-~~~-IvSGGaD~~l~i 414 (423)
T KOG0313|consen 339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD--WNE-GGL-IVSGGADNKLRI 414 (423)
T ss_pred EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEe--ccC-Cce-EEeccCcceEEE
Confidence 56789999999999999999999999999999999999877 8999999999999998 443 344 999999999999
Q ss_pred EeCC
Q 002782 426 WDSE 429 (882)
Q Consensus 426 wd~~ 429 (882)
+...
T Consensus 415 ~~~~ 418 (423)
T KOG0313|consen 415 FKGS 418 (423)
T ss_pred eccc
Confidence 8643
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-27 Score=222.80 Aligned_cols=285 Identities=18% Similarity=0.274 Sum_probs=238.3
Q ss_pred eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeec--CCeEE
Q 002782 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVR 424 (882)
Q Consensus 347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~ 424 (882)
+.+......|.++.|.. ++.++++++.|..+++||..++.+..++..+.-.+..+. +...... ++.++. |.+||
T Consensus 8 k~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~--Fth~~~~-~i~sStk~d~tIr 83 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLAC--FTHHSNT-VIHSSTKEDDTIR 83 (311)
T ss_pred cccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEE--EecCCce-EEEccCCCCCceE
Confidence 34444678899999987 778888899999999999999999999998877777666 5566555 444444 88999
Q ss_pred EEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC
Q 002782 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (882)
Q Consensus 425 iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (882)
..++.+.+.++.+.+|...|.+++.+|-+. .+++++.|++|++||++... +...+ +...-..++|.|
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~----------cqg~l--~~~~~pi~AfDp 150 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK----------CQGLL--NLSGRPIAAFDP 150 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC----------CceEE--ecCCCcceeECC
Confidence 999999999999999999999999999875 79999999999999998542 11111 223335689999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCc--eeEEEEe---cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcC
Q 002782 505 NDSLVCTGSQDRTACVWRLPDL--VSVVTFR---GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 579 (882)
Q Consensus 505 ~~~~la~~s~dg~i~iwd~~~~--~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 579 (882)
.|-++|++.....|++||++.. .+..++. +.....+.+.|||||++|+.+...+.+++.|.-+|..+.++.++.+
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN 230 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC
Confidence 9999999998889999999864 3444443 3467789999999999999999999999999999999999988765
Q ss_pred CE---EEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEecc-CCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782 580 SV---LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 580 ~v---~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~ 650 (882)
.- ...+|+||++++++|+.||.|.+|++++|..+..+.+ +.+++.++.|+|.-.+++|++ ..+.+|-..
T Consensus 231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 43 6789999999999999999999999999999999998 689999999999887777775 558888544
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=9.6e-28 Score=259.09 Aligned_cols=276 Identities=29% Similarity=0.539 Sum_probs=245.5
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 002782 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS-WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT 137 (882)
Q Consensus 59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~-~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~ 137 (882)
+...+++..|. ..++++++.+.+|++||..++..+.. +.||.+.|.+++|..-+.+|++|+.|.+++|||..+|.|+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678999998 56799999999999999999999988 9999999999999988889999999999999999999999
Q ss_pred EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEec
Q 002782 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (882)
Q Consensus 138 ~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~ 217 (882)
+.+.+|.+.|.++...+ .++++|+.|.+|++|++.++.++..+.+|.++|.++..+ +.++++|+.|++|++|++
T Consensus 285 ~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence 99999999999998865 348889999999999999999999999999999999997 789999999999999998
Q ss_pred CCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeee
Q 002782 218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 297 (882)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~ 297 (882)
.+++++.
T Consensus 359 ~~~~cl~------------------------------------------------------------------------- 365 (537)
T KOG0274|consen 359 RTGKCLK------------------------------------------------------------------------- 365 (537)
T ss_pred hhceeee-------------------------------------------------------------------------
Confidence 7655443
Q ss_pred eccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCc
Q 002782 298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 377 (882)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 377 (882)
.+.||...|.++.+.+. ..++.|+.|+.
T Consensus 366 --------------------------------------------------sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 366 --------------------------------------------------SLSGHTGRVYSLIVDSE--NRLLSGSLDTT 393 (537)
T ss_pred --------------------------------------------------eecCCcceEEEEEecCc--ceEEeeeeccc
Confidence 34457777777766432 89999999999
Q ss_pred EEEEeCCCc-eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeec-ccccEEEEEEccCCCc
Q 002782 378 VQVYDLSSM-SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQN 455 (882)
Q Consensus 378 i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~s~~~~~ 455 (882)
|++||+.+. +++..+.+|...+..+. ..++. +++++.|++|++||..++.++..+.+ |.+.|+++++. ..
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~~v~~l~----~~~~~-Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~ 465 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTSLVSSLL----LRDNF-LVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KE 465 (537)
T ss_pred eEeecCCchhhhhhhhcCCcccccccc----cccce-eEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cc
Confidence 999999999 99999999999997765 44555 99999999999999999999999998 77899999887 23
Q ss_pred EEEEeeCCCeEEEEecCCCC
Q 002782 456 FLVSGSSDHTIKVWSFDGLS 475 (882)
Q Consensus 456 ~l~s~~~dg~i~~wd~~~~~ 475 (882)
.+++++.|+++++||++...
T Consensus 466 ~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 466 EILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred eEEEEecCCeeEEEecccCc
Confidence 68999999999999998764
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.9e-28 Score=240.99 Aligned_cols=283 Identities=19% Similarity=0.339 Sum_probs=248.3
Q ss_pred cCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEe
Q 002782 303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD 382 (882)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d 382 (882)
....+.+++++|....-++++..-.+.+|+.... ...+.+..+...+.++.|.. ++.++++|...|.|++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~-------~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD 96 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR-------SVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFD 96 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchh-------hhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEec
Confidence 4467899999999999999999999999987643 23344555677888899877 899999999999999999
Q ss_pred CCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeC
Q 002782 383 LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS 462 (882)
Q Consensus 383 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~ 462 (882)
..+....+.+.+|+.++..+. |.|.++.++++|++|+.+++||+.+......+.+|+..|.|.+++|....++++||.
T Consensus 97 ~k~r~iLR~~~ah~apv~~~~--f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 97 MKSRVILRQLYAHQAPVHVTK--FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred cccHHHHHHHhhccCceeEEE--ecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC
Confidence 888888889999999999998 889999889999999999999999999877899999999999999998889999999
Q ss_pred CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEE
Q 002782 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWS 541 (882)
Q Consensus 463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~ 541 (882)
||+|++||..... .......|+.+|..+.+-|.|.++|+++. ..|++||+.+| +.+..+..|...|+|
T Consensus 175 Dg~vrl~DtR~~~----------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTc 243 (487)
T KOG0310|consen 175 DGKVRLWDTRSLT----------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTC 243 (487)
T ss_pred CceEEEEEeccCC----------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEE
Confidence 9999999998642 23334569999999999999999999874 67999999955 444455559999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEc
Q 002782 542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (882)
Q Consensus 542 l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 607 (882)
+++..++..|++|+-|+.|++||+.+.+.+..+. ..++|.+++.+|++..++.|..||.+.+-+.
T Consensus 244 L~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 244 LRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 9999999999999999999999999999998887 7789999999999999999999998877644
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-28 Score=251.67 Aligned_cols=282 Identities=25% Similarity=0.407 Sum_probs=239.6
Q ss_pred cccccCCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 002782 17 QQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR 96 (882)
Q Consensus 17 ~~~y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~ 96 (882)
..||. .-+.|| ..+.||++.+..|++|+..+++.......+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.++
T Consensus 176 dDfY~-nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 176 DDFYL-NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred ccHhh-hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc
Confidence 34443 457788 5668999999999999999999777777678999999999999999999999999999999999999
Q ss_pred Eeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEE
Q 002782 97 SWKG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY-FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (882)
Q Consensus 97 ~~~~-h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~-~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd 174 (882)
.+.+ |...|-+++|. +..+.+|+.|+.|..+|+........ +.+|...|..+.|++|+.. +++|+.|+.+.|||
T Consensus 254 ~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--LASGGNDNVVFIWD 329 (484)
T ss_pred cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe--eccCCCccceEecc
Confidence 9999 99999999999 66799999999999999987765555 8899999999999998776 99999999999999
Q ss_pred CCCCeEEEEecCcccceEEEEEcc-CCCEEEEEe--CCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccc
Q 002782 175 LLAKKCVATLDKHFSRVTSMAITS-DGSTLISAG--RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 251 (882)
Q Consensus 175 ~~~~~~~~~l~~h~~~v~~l~~s~-~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (882)
.....+...+..|.+.|.+++|+| ....|++|+ .|+.|++||..++..+..+...
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---------------------- 387 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---------------------- 387 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC----------------------
Confidence 999999999999999999999999 455777775 6889999998776655444333
Q ss_pred hhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEE
Q 002782 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (882)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 331 (882)
T Consensus 388 -------------------------------------------------------------------------------- 387 (484)
T KOG0305|consen 388 -------------------------------------------------------------------------------- 387 (484)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEE-EEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCC
Q 002782 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV-ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG 410 (882)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 410 (882)
..|..+.|++...+++.+ |...+.|.||+..+.+.+..+.+|...|..++ .+|+|
T Consensus 388 ----------------------sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la--~SPdg 443 (484)
T KOG0305|consen 388 ----------------------SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA--LSPDG 443 (484)
T ss_pred ----------------------CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE--ECCCC
Confidence 334445554444334333 44567899999999999999999999999999 99999
Q ss_pred CEEEEEeecCCeEEEEeCCCc
Q 002782 411 KILIVTGSKDNSVRLWDSESR 431 (882)
Q Consensus 411 ~~~l~~~~~dg~i~iwd~~~~ 431 (882)
.. +++|+.|.++++|++-..
T Consensus 444 ~~-i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 444 ET-IVTGAADETLRFWNLFDE 463 (484)
T ss_pred CE-EEEecccCcEEeccccCC
Confidence 98 999999999999997654
No 80
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=228.91 Aligned_cols=201 Identities=24% Similarity=0.494 Sum_probs=175.4
Q ss_pred ceEEccCCCEEEEEeCC-eEEEEEcCC------------------CceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcE
Q 002782 24 PLVVSSDGSFIACACGE-SINIVDLSN------------------ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREI 84 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~-~I~i~d~~~------------------~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i 84 (882)
+.+|||||.++|+|+.+ .|.|+|++. ...+++|-.|.++|+++.|+|....|++|+.|++|
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tv 196 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTV 196 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeE
Confidence 78899999999999988 899999861 13567888899999999999999999999999999
Q ss_pred EEEECCCCeeEEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---ecCCCcEEEEEEecCCCcc
Q 002782 85 RVWDLSTLKCLRSWKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF---KGHKGVVSSILFHPDTDKS 159 (882)
Q Consensus 85 ~iwd~~~~~~~~~~~~--h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~---~~h~~~V~~l~f~~~~~~~ 159 (882)
++||+......+-++. ...+|.++.|+|.|.+|+.|....++++||+.+-+|...- .+|.+.|+++.+++.++
T Consensus 197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-- 274 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-- 274 (430)
T ss_pred EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc--
Confidence 9999976544433332 3579999999999999999999999999999998876553 36999999999999765
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEe-cCccc-ceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeee
Q 002782 160 LLFSGSDDATVRVWDLLAKKCVATL-DKHFS-RVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (882)
Q Consensus 160 ~l~sgs~dg~I~vwd~~~~~~~~~l-~~h~~-~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 226 (882)
+.++|+.||.|++||--+++|+.++ ..|.+ .|.+..|+.+|+++++.|.|..+++|.+.+++.+...
T Consensus 275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 4999999999999999999999988 44654 8999999999999999999999999999988876654
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-27 Score=247.03 Aligned_cols=271 Identities=21% Similarity=0.370 Sum_probs=241.6
Q ss_pred CCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeec-cccc
Q 002782 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGA 443 (882)
Q Consensus 365 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 443 (882)
..+.+++|.. ..+++|+..++........+...|+++. +.++|.. |++|..+|.|.|||..+.+.+..+.+ |...
T Consensus 187 s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~--ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~~~~~h~~r 262 (484)
T KOG0305|consen 187 SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVK--WSPDGSH-LAVGTSDGTVQIWDVKEQKKTRTLRGSHASR 262 (484)
T ss_pred cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEE--ECCCCCE-EEEeecCCeEEEEehhhccccccccCCcCce
Confidence 3456777665 7899999999997777777789999999 8899998 99999999999999999988888888 9999
Q ss_pred EEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC
Q 002782 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (882)
Q Consensus 444 v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~ 523 (882)
|.+++|... .+.+|+.|+.|..+|++.... ......+|...|..+.|++|++++|+|+.|+.+.|||.
T Consensus 263 vg~laW~~~---~lssGsr~~~I~~~dvR~~~~---------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 263 VGSLAWNSS---VLSSGSRDGKILNHDVRISQH---------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG 330 (484)
T ss_pred eEEEeccCc---eEEEecCCCcEEEEEEecchh---------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence 999999943 799999999999999986532 22247889999999999999999999999999999999
Q ss_pred CCceeEEEEecccCceEEEEEcC-CCCEEEEee--CCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEee--c
Q 002782 524 PDLVSVVTFRGHKRGIWSVEFSP-VDQVVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG--A 598 (882)
Q Consensus 524 ~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~ 598 (882)
....+...+..|...|.+++|+| ...+||+|+ .|+.|++||..+|.++..+. -...|..+.|++..+.|+++. .
T Consensus 331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCC
Confidence 88899999999999999999999 456888875 59999999999999998886 557899999999988777654 3
Q ss_pred CCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782 599 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (882)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~ 652 (882)
++.|.||+..+.+.+..+.+|..+|..+++||||..+++|+.|.++++|++-+.
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 678999999999999999999999999999999999999999999999999875
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3e-28 Score=257.89 Aligned_cols=260 Identities=24% Similarity=0.367 Sum_probs=213.0
Q ss_pred eeeeec-CCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------------------------------------
Q 002782 52 IKSTIE-GGSDTITALALSPDDKLLFSSGHSREIRVWDLST--------------------------------------- 91 (882)
Q Consensus 52 ~~~~l~-~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~--------------------------------------- 91 (882)
..+.+. .|.+.|.++.||+||+|||+||.|+.|+||.+..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334555 7999999999999999999999999999998753
Q ss_pred ---------------------CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEE
Q 002782 92 ---------------------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSI 150 (882)
Q Consensus 92 ---------------------~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l 150 (882)
.++++.+.||.+.|..+.||.++ +|.+++.|.+|++|++....|+..|. |..-|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 12344578999999999999875 89999999999999999999999998 99999999
Q ss_pred EEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcc
Q 002782 151 LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (882)
Q Consensus 151 ~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 230 (882)
+|+|..+ .++++|+-||.|+||++...+.+.-...+ .-|++++|+|||++.+.|+.+|.+++|+....+.........
T Consensus 416 aFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 416 AFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 9999854 58999999999999999887766544444 789999999999999999999999999987765443221100
Q ss_pred eeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEE
Q 002782 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAA 310 (882)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (882)
T Consensus 494 -------------------------------------------------------------------------------- 493 (712)
T KOG0283|consen 494 -------------------------------------------------------------------------------- 493 (712)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeee
Q 002782 311 TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY 390 (882)
Q Consensus 311 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 390 (882)
...+ ...+. .|+.+-|.|.+...+++.++|..|+|||..+...+.
T Consensus 494 ---------------------------------~~~K-k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~ 538 (712)
T KOG0283|consen 494 ---------------------------------HNKK-KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH 538 (712)
T ss_pred ---------------------------------ccCc-cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh
Confidence 0000 01122 688888888777789999999999999999888888
Q ss_pred eeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (882)
Q Consensus 391 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 431 (882)
.+.|+...-..+...++.+|++ |++++.|..|++|++...
T Consensus 539 KfKG~~n~~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 539 KFKGFRNTSSQISASFSSDGKH-IVSASEDSWVYIWKNDSF 578 (712)
T ss_pred hhcccccCCcceeeeEccCCCE-EEEeecCceEEEEeCCCC
Confidence 8888766555555558889998 999999999999998643
No 83
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.6e-26 Score=249.90 Aligned_cols=218 Identities=22% Similarity=0.321 Sum_probs=176.3
Q ss_pred CCCCcccccccccccccccccCC-ceEEccCCCEEEEEeCC-eEEEEEcCCCce----------e---eeecCCCccEEE
Q 002782 1 MASLPLKKSYGCEPVLQQFYGGG-PLVVSSDGSFIACACGE-SINIVDLSNASI----------K---STIEGGSDTITA 65 (882)
Q Consensus 1 m~~~~l~~~~~~~~~~~~~y~g~-~va~s~dg~~la~~~~~-~I~i~d~~~~~~----------~---~~l~~~~~~I~~ 65 (882)
|....++-.|.....-+..|.+- ....++|+..++++... ....|+...+.. . ..+.||.+.|++
T Consensus 1 ~~~sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~ 80 (493)
T PTZ00421 1 MSVSRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIID 80 (493)
T ss_pred CCcccccccccccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEE
Confidence 66666777777777777777653 45566675444444433 444565443322 1 247789999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCCC-------eeEEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeE
Q 002782 66 LALSP-DDKLLFSSGHSREIRVWDLSTL-------KCLRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDVDGGFC 136 (882)
Q Consensus 66 l~~sp-d~~~las~~~dg~i~iwd~~~~-------~~~~~~~~h~~~V~~l~fs~~~-~~lasg~~dg~v~vwd~~~~~~ 136 (882)
++|+| ++++||+|+.|++|++||+.++ .++..+.+|...|.+++|+|++ .+|++|+.|++|+|||+.++..
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~ 160 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA 160 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE
Confidence 99999 8899999999999999999765 3577889999999999999986 6999999999999999999999
Q ss_pred EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccc-eEEEEEccCCCEEEEEe----CCCe
Q 002782 137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR-VTSMAITSDGSTLISAG----RDKV 211 (882)
Q Consensus 137 ~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~-v~~l~~s~~~~~l~s~~----~dg~ 211 (882)
+..+.+|...|.+++|+|++.. |++++.|+.|++||+.+++.+..+.+|.+. +..+.|.+++..+++++ .|+.
T Consensus 161 ~~~l~~h~~~V~sla~spdG~l--Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 161 VEVIKCHSDQITSLEWNLDGSL--LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred EEEEcCCCCceEEEEEECCCCE--EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 9999999999999999998764 999999999999999999999999999764 45678899888888765 4688
Q ss_pred EEEEecCCc
Q 002782 212 VNLWDLRDY 220 (882)
Q Consensus 212 i~vwd~~~~ 220 (882)
|++||++..
T Consensus 239 VklWDlr~~ 247 (493)
T PTZ00421 239 IMLWDTRKM 247 (493)
T ss_pred EEEEeCCCC
Confidence 999987643
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.1e-28 Score=221.29 Aligned_cols=268 Identities=22% Similarity=0.383 Sum_probs=226.7
Q ss_pred EeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCC-CceeeeeeeCCCcceEE
Q 002782 323 TADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS-SMSCSYVLAGHSEIVLC 401 (882)
Q Consensus 323 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~ 401 (882)
..+|.+.+.+....+ .+ ....--...+.+.+++|++..++.+++++.||.+++||+. ...++..++.|...|.+
T Consensus 35 ~G~G~L~ile~~~~~----gi-~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~S 109 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPK----GI-QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYS 109 (311)
T ss_pred ccCceEEEEecCCCC----Ce-EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEE
Confidence 346777777765221 11 1111223457789999999999999999999999999965 34567788999999999
Q ss_pred eeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCc
Q 002782 402 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481 (882)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 481 (882)
++ +.+..+..+++++.|++|++|+...+..+.++.+|..-|...+|+|..++++++++.|+++++||++...
T Consensus 110 vd--wn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g------ 181 (311)
T KOG0277|consen 110 VD--WNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG------ 181 (311)
T ss_pred ec--cccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC------
Confidence 99 7777777789999999999999999999999999999999999999999999999999999999987542
Q ss_pred ccccchhhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCC-CEEEEeeCCC
Q 002782 482 MNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDK 558 (882)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~ 558 (882)
....+..|...|.|+.|+. +...++||+.|+.|+.||++.. .++..+.+|.-.|..+.|||.. .+|++++.|-
T Consensus 182 ----k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 182 ----KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred ----ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence 2223678999999999998 6688999999999999999875 5678899999999999999964 5899999999
Q ss_pred cEEEEecCCC-ceeeEeecCcCCEEEEEEEe-CCCEEEEeecCCeEEEEEc
Q 002782 559 TIKIWSISDG-SCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTV 607 (882)
Q Consensus 559 ~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~ 607 (882)
++||||...+ .++.+...|+.-+..+.|++ ++.++++++-|+.++||+.
T Consensus 258 T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 258 TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999998744 56777888999999999986 6779999999999999984
No 85
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=6.4e-29 Score=239.96 Aligned_cols=282 Identities=23% Similarity=0.326 Sum_probs=242.4
Q ss_pred eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCce--eeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEE
Q 002782 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (882)
Q Consensus 348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (882)
.+..|.+++.++.|.+ +...|++|+.|..|.+|+....+ ...++.|..+.++.++ +.++++. +++++.|+.+++
T Consensus 170 ~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d--~d~~~~~-~iAas~d~~~r~ 245 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSID--FDSDNKH-VIAASNDKNLRL 245 (459)
T ss_pred hhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceee--ecCCCce-EEeecCCCceee
Confidence 4456778888999987 66799999999999999988766 6678889999999999 8899988 888899999999
Q ss_pred EeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC
Q 002782 426 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (882)
Q Consensus 426 wd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (882)
|++...+...++.+|...|+++.|..... .+++|+.|.+|+.||+.... +... .-....++.|+.+
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~----------C~kt-~l~~S~cnDI~~~-- 311 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAY----------CSKT-VLPGSQCNDIVCS-- 311 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhh----------eecc-ccccccccceEec--
Confidence 99999999999999999999999987755 49999999999999998532 1111 1123345555555
Q ss_pred CcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc----CCE
Q 002782 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT----SSV 581 (882)
Q Consensus 506 ~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~----~~v 581 (882)
+..+++|-.|++|++||.++..+......+. .|+++..++++..|.+++.|.++.+.|+.+......+.... ...
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence 5678899999999999999999999988766 89999999999999999999999999999998888776422 348
Q ss_pred EEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCC--ceEEEEEcCCCCEEEEEeCCCCEEEEE
Q 002782 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED--KIWALAVGKKTEMFATGGSDALVNLWH 648 (882)
Q Consensus 582 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~i~iw~ 648 (882)
+.+.|||++.|+++||.||.|+||++.++++...+..... .|+++.|+|.|..|++++.++.+.+|.
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 8899999999999999999999999999999988875444 599999999999999999999999993
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=234.20 Aligned_cols=288 Identities=28% Similarity=0.410 Sum_probs=225.5
Q ss_pred eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE----E-------------e-ecCCCCEEEEEEcCCC
Q 002782 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR----S-------------W-KGHDGPAIGMACHPSG 114 (882)
Q Consensus 53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~----~-------------~-~~h~~~V~~l~fs~~~ 114 (882)
...+..|.-+|+|++++||++++++++.+++|.=|++.+|+..+ + - ++|...|.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45667899999999999999999999999999999998876331 1 1 3688899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEE
Q 002782 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 194 (882)
Q Consensus 115 ~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l 194 (882)
+|||+|+.|..|.||+.++.+.++.+++|.+.|.+++|-..... +++++.|+.|++|+++....+.++.+|.+.|.++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~--lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSE--LYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccc--eeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999999999999999999999999876666 9999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCC
Q 002782 195 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 274 (882)
Q Consensus 195 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 274 (882)
....-++.+-+|++|+++++|++.....+...+....+.+++++.
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In----------------------------------- 337 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN----------------------------------- 337 (479)
T ss_pred chhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-----------------------------------
Confidence 998888877788899999999986544443333333444444433
Q ss_pred eEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCC
Q 002782 275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354 (882)
Q Consensus 275 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (882)
T Consensus 338 -------------------------------------------------------------------------------- 337 (479)
T KOG0299|consen 338 -------------------------------------------------------------------------------- 337 (479)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeee------------CCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA------------GHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (882)
Q Consensus 355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 422 (882)
+.++++|+.+|.|.+|++...+++.+.. .+...|++++ ..|..+. +++|+.+|.
T Consensus 338 -----------~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla--~i~~sdL-~asGS~~G~ 403 (479)
T KOG0299|consen 338 -----------DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLA--VIPGSDL-LASGSWSGC 403 (479)
T ss_pred -----------ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeE--ecccCce-EEecCCCCc
Confidence 3344444444555555544444333221 1123677777 6676665 999999999
Q ss_pred EEEEeCCCc----eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecC
Q 002782 423 VRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (882)
Q Consensus 423 i~iwd~~~~----~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~ 472 (882)
|++|-+..+ .++..+. -.+.|++++|+++|..+++..+....+--|-..
T Consensus 404 vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 404 VRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred eEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 999998877 3333443 668899999999999767777777766666544
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-26 Score=215.18 Aligned_cols=293 Identities=23% Similarity=0.340 Sum_probs=238.6
Q ss_pred eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEE
Q 002782 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA--DRKVLVWD 130 (882)
Q Consensus 53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~--dg~v~vwd 130 (882)
.+.+......|+++.|+++|.+|++++.|.+|++||..+++.++++..++-.|..++|......++.++. |.+|+.-+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 3445555778999999999999999999999999999999999999988889999999888777777775 89999999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCC
Q 002782 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK 210 (882)
Q Consensus 131 ~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg 210 (882)
+.+.+.++.|.||...|..++.+|-++. +++++.|++|++||++..+|...+.....+ ..+|.|+|-+++++...+
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~--FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDT--FLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSE 162 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCe--EEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCC
Confidence 9999999999999999999999998765 999999999999999998888777544333 468999999999998888
Q ss_pred eEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeec
Q 002782 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290 (882)
Q Consensus 211 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~ 290 (882)
.|++||++....-
T Consensus 163 ~IkLyD~Rs~dkg------------------------------------------------------------------- 175 (311)
T KOG1446|consen 163 LIKLYDLRSFDKG------------------------------------------------------------------- 175 (311)
T ss_pred eEEEEEecccCCC-------------------------------------------------------------------
Confidence 9999998754210
Q ss_pred CCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEE
Q 002782 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA 370 (882)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 370 (882)
++... ....+...+...+.|++ +++.+.
T Consensus 176 ---------------PF~tf------------------------------------~i~~~~~~ew~~l~FS~-dGK~iL 203 (311)
T KOG1446|consen 176 ---------------PFTTF------------------------------------SITDNDEAEWTDLEFSP-DGKSIL 203 (311)
T ss_pred ---------------CceeE------------------------------------ccCCCCccceeeeEEcC-CCCEEE
Confidence 00000 00001234566777877 788888
Q ss_pred EEEcCCcEEEEeCCCceeeeeeeCCCcce-EEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeec-ccccEEEEE
Q 002782 371 VATNIEQVQVYDLSSMSCSYVLAGHSEIV-LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVA 448 (882)
Q Consensus 371 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~ 448 (882)
.+++.+.+.+.|.-+|.....+.++...- ..+..++.|+++. +++|+.||+|.+|+++++..+..+.+ +.+++.++.
T Consensus 204 lsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~ 282 (311)
T KOG1446|consen 204 LSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVR 282 (311)
T ss_pred EEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccc
Confidence 88888999999999999888888765543 2255558899997 99999999999999999999999888 799999999
Q ss_pred EccCCCcEEEEeeCCCeEEEEecC
Q 002782 449 FSKKLQNFLVSGSSDHTIKVWSFD 472 (882)
Q Consensus 449 ~s~~~~~~l~s~~~dg~i~~wd~~ 472 (882)
|+|... .-.+.+..+.+|-..
T Consensus 283 fnP~~~---mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 283 FNPRYA---MFVSASSNLVFWLPD 303 (311)
T ss_pred cCCcee---eeeecCceEEEEecc
Confidence 999843 344455678888654
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.6e-27 Score=257.20 Aligned_cols=293 Identities=20% Similarity=0.315 Sum_probs=230.2
Q ss_pred CCccEEEEEEcCCCCEEEEEe--CCCcEEEEECCC------------CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 002782 59 GSDTITALALSPDDKLLFSSG--HSREIRVWDLST------------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124 (882)
Q Consensus 59 ~~~~I~~l~~spd~~~las~~--~dg~i~iwd~~~------------~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg 124 (882)
+...|.++..+|||..+|+|+ .|+.++||+... .+.+.+...|.+.|.|+.|+|||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456799999999999999999 899999998742 345667788999999999999999999999999
Q ss_pred cEEEEECCC------------------CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecC
Q 002782 125 KVLVWDVDG------------------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186 (882)
Q Consensus 125 ~v~vwd~~~------------------~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~ 186 (882)
.|.||+... .++...+.+|.+.|..++|+|++. +|++++.|++|.+||..+.+++..+.+
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccceeeeeeec
Confidence 999999862 146778999999999999999765 599999999999999999999999999
Q ss_pred cccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceE
Q 002782 187 HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 266 (882)
Q Consensus 187 h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (882)
|.+.|..+.|.|-|+|+++-+.|++|++|++.+....+.+..+..
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~----------------------------------- 214 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE----------------------------------- 214 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh-----------------------------------
Confidence 999999999999999999999999999999766544433321100
Q ss_pred EEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeee
Q 002782 267 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 346 (882)
Q Consensus 267 ~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 346 (882)
....
T Consensus 215 ---------------------------------~~~~------------------------------------------- 218 (942)
T KOG0973|consen 215 ---------------------------------ESPL------------------------------------------- 218 (942)
T ss_pred ---------------------------------hCCC-------------------------------------------
Confidence 0000
Q ss_pred eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEee----cCCe
Q 002782 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS----KDNS 422 (882)
Q Consensus 347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----~dg~ 422 (882)
.....-+. |+|+|.+ |++.. .-.+
T Consensus 219 -------------------------------------------------~T~f~RlS--WSPDG~~-las~nA~n~~~~~ 246 (942)
T KOG0973|consen 219 -------------------------------------------------TTFFLRLS--WSPDGHH-LASPNAVNGGKST 246 (942)
T ss_pred -------------------------------------------------cceeeecc--cCCCcCe-ecchhhccCCcce
Confidence 00011112 5566655 33321 2235
Q ss_pred EEEEeCCCceEEeeeecccccEEEEEEccC--------CC--------cEEEEeeCCCeEEEEecCCCCCCCCCcccccc
Q 002782 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKK--------LQ--------NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA 486 (882)
Q Consensus 423 i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~--------~~--------~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~ 486 (882)
+.|.+-.+.+.-..+-+|.+++.++.|+|. |. .++++|+.|++|.||......+ .
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP---------l 317 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP---------L 317 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc---------h
Confidence 667777677777778899999999999872 11 1789999999999999754321 2
Q ss_pred hhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCC
Q 002782 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 525 (882)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~ 525 (882)
.....-....|..++|+|||..|.++|.||+|.++.++.
T Consensus 318 ~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 318 FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 233344567899999999999999999999999998753
No 89
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2.2e-27 Score=244.08 Aligned_cols=282 Identities=23% Similarity=0.366 Sum_probs=244.8
Q ss_pred eeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceee--eeeeCCCcceEE-eeeeeecCCCEEEEEeec
Q 002782 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVLAGHSEIVLC-LDTCALSSGKILIVTGSK 419 (882)
Q Consensus 343 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~v~~-~~~~~~~~~~~~l~~~~~ 419 (882)
..+...+.||...+..++.. ++..++.++.||++++|+-...... ..+.+|.+.+.+ +. +.+..+..+++|+.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~--~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~--y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVT--DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSIC--YAESDKGRLVVGGM 79 (745)
T ss_pred ceeEEEeccCccchheeEec--CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccce--eccccCcceEeecc
Confidence 45667888999999888876 4458999999999999998665543 356677777766 43 44444444999999
Q ss_pred CCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeE
Q 002782 420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (882)
Q Consensus 420 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (882)
|+.+.+|...+..++..+.+|.+.|.++....++. +++||.|.++++|.... ......+|...|.+
T Consensus 80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~------------l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE------------LVYSLQGHTASVWA 145 (745)
T ss_pred cceEEEEecCCCCchhhhhccccceeeeecCCcCc--eEecccccceEEecchh------------hhcccCCcchheee
Confidence 99999999999999999999999999999887764 89999999999998764 44457899999999
Q ss_pred EEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcC
Q 002782 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 579 (882)
Q Consensus 500 ~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 579 (882)
++.-|++ .+++||.|++|++|.- ++.+.+|.+|..-|..+++-+++ .+++++.||.|++|++ +|+++..+.||++
T Consensus 146 v~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn 220 (745)
T KOG0301|consen 146 VASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTN 220 (745)
T ss_pred eeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccce
Confidence 9999988 8899999999999975 77899999999999999999754 5788999999999999 8999999999999
Q ss_pred CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782 580 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 580 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~ 650 (882)
-|.++....++..++++++|++++||+.. +|.+.+..+...||++.+-++|. +++|+.||.|+||...
T Consensus 221 ~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 221 FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 99999988888999999999999999865 89999986677999999998886 7889999999999876
No 90
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=99.96 E-value=4.4e-29 Score=216.53 Aligned_cols=136 Identities=38% Similarity=0.802 Sum_probs=128.7
Q ss_pred cchHHHhhhccchHHHHHHHhhcCCchhHHHHHHHHH---hcch--hHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcch
Q 002782 669 GQELENAVLDADYTKAIQVAFELRRPHKLFELFASVC---RKRE--AELQIEKALHALGKEEIRQLLEYVREWNTKPKLC 743 (882)
Q Consensus 669 ~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~---~~~~--~~~~l~~~~~~l~~~~~~~ll~~~~~~~~~~~~~ 743 (882)
+|++.|++..++|.+|+.+|+++++|.+++.+++.++ .+.+ ....++.++..|+.+++.+||+|+++||||+|+|
T Consensus 1 eQ~L~N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~~ 80 (141)
T PF08625_consen 1 EQELSNLLRQKDYKEALRLALKLDHPFRLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRTS 80 (141)
T ss_pred CchHHHHHHhhhHHHHHHHHHhcCCcHHHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhcccccH
Confidence 5789999999999999999999999999999999998 3222 2467999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCcchhhcccChHhHHhhhccchhhHHHHHHHHHhhhhhhheeccccC
Q 002782 744 HVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMS 804 (882)
Q Consensus 744 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 804 (882)
++||.+|+.||+.|+++++.++|++.++|++|+||++|||+|+++|+|++|+|||++.+|+
T Consensus 81 ~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteRH~~Rl~~L~q~syllDy~l~~M~ 141 (141)
T PF08625_consen 81 HVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTERHFQRLDRLLQKSYLLDYTLQQMD 141 (141)
T ss_pred HHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999995
No 91
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=237.67 Aligned_cols=289 Identities=24% Similarity=0.353 Sum_probs=236.6
Q ss_pred eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcE
Q 002782 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (882)
Q Consensus 93 ~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I 170 (882)
+....+..|.+.+..+.|-++...|++|+.|..|++|++..++ ...++.|..+.|+.+.|.+++.. +++.+.|+.+
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~--~iAas~d~~~ 243 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKH--VIAASNDKNL 243 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCce--EEeecCCCce
Confidence 4455677899999999999999999999999999999998776 66778889999999999998765 9999999999
Q ss_pred EEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCccccccc
Q 002782 171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (882)
Q Consensus 171 ~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (882)
++|++.+.+...++.+|...|+++.|......+++|+.|.+|+.||+....+.+++-..+
T Consensus 244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S-------------------- 303 (459)
T KOG0288|consen 244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS-------------------- 303 (459)
T ss_pred eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc--------------------
Confidence 999999999999999999999999999887779999999999999997644433211000
Q ss_pred chhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEE
Q 002782 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (882)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 330 (882)
T Consensus 304 -------------------------------------------------------------------------------- 303 (459)
T KOG0288|consen 304 -------------------------------------------------------------------------------- 303 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCC
Q 002782 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG 410 (882)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 410 (882)
.+..+. ..
T Consensus 304 -------------------------------------------------------------------~cnDI~--~~--- 311 (459)
T KOG0288|consen 304 -------------------------------------------------------------------QCNDIV--CS--- 311 (459)
T ss_pred -------------------------------------------------------------------cccceE--ec---
Confidence 000000 11
Q ss_pred CEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhh
Q 002782 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (882)
Q Consensus 411 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 490 (882)
...+++|..|+.||+||..+..+......+. .|+++..++++. -+.+++.|.++.+.|+.+..-.. ........
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~eI~~----~~sA~g~k 385 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKEIRQ----TFSAEGFK 385 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe-EEeeecCCCceeeeecccccEEE----Eeeccccc
Confidence 1137888889999999999999888887776 999999999987 46777999999999998653100 11111111
Q ss_pred hhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccC--ceEEEEEcCCCCEEEEeeCCCcEEEE
Q 002782 491 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIW 563 (882)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~d~~i~iw 563 (882)
...+.+.+.|||++.|+|+||.||.|+||++.++++...+..... .|+++.|+|.|..|++++.++.+.+|
T Consensus 386 --~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 386 --CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred --cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 234589999999999999999999999999999999888876544 59999999999999999999999999
No 92
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=233.55 Aligned_cols=290 Identities=22% Similarity=0.406 Sum_probs=229.2
Q ss_pred EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEe
Q 002782 137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216 (882)
Q Consensus 137 ~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd 216 (882)
+..+.||...|.+++=+|.. ...+++|+.||.|++||+.+..++.++..|.+.|.+++++. ..++++|.|++|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~-ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNK-LSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhhccccccccchhhcCcch-hhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 34568999999999999973 34599999999999999999999999999999999999987 6788999999999998
Q ss_pred cCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceee
Q 002782 217 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 296 (882)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~ 296 (882)
+... ...++.
T Consensus 136 ~~~~-p~~til--------------------------------------------------------------------- 145 (433)
T KOG0268|consen 136 IDGP-PLHTIL--------------------------------------------------------------------- 145 (433)
T ss_pred ccCC-cceeee---------------------------------------------------------------------
Confidence 6531 000000
Q ss_pred eeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCC
Q 002782 297 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 376 (882)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 376 (882)
|
T Consensus 146 -------------------------------------------------------------------------------g 146 (433)
T KOG0268|consen 146 -------------------------------------------------------------------------------G 146 (433)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred cEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcE
Q 002782 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 456 (882)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~ 456 (882)
...+..++ ....+.. +++++. .|.|||.....++..+.-....|.++.|+|....+
T Consensus 147 -------------------~s~~~gId--h~~~~~~-FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 147 -------------------KSVYLGID--HHRKNSV-FATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI 202 (433)
T ss_pred -------------------cccccccc--ccccccc-ccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchh
Confidence 00011111 1122222 677655 48899999888888888888899999999998889
Q ss_pred EEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-eeEEEEecc
Q 002782 457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGH 535 (882)
Q Consensus 457 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h 535 (882)
|++++.|+.|.+||+....... .+ ...-.-+.++|+|++-.+++|+.|..++.||++.. .++....+|
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~---------KV--i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLK---------KV--ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred eeeeccCCceEEEecccCCccc---------ee--eeeccccceecCccccceeeccccccceehhhhhhcccchhhccc
Confidence 9999999999999998763211 00 11224478999999999999999999999999876 567788899
Q ss_pred cCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeec-CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613 (882)
Q Consensus 536 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~ 613 (882)
.+.|.+++|||.|+-+++||.|.+|+||....+.....+.. ....|.++.||.|.+|+++||.|+.|++|.....+.+
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 99999999999999999999999999999987755443321 2256899999999999999999999999987654433
No 93
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.9e-27 Score=233.54 Aligned_cols=214 Identities=15% Similarity=0.219 Sum_probs=174.3
Q ss_pred eecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCC
Q 002782 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 516 (882)
Q Consensus 437 ~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg 516 (882)
..+|...+++.+|+|.....+++++.||++++|++....... .........+..-++++++|+|+|++||+|+.||
T Consensus 264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~----qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG 339 (641)
T KOG0772|consen 264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL----QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG 339 (641)
T ss_pred cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe----eEEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence 458999999999999999999999999999999998653211 0001111223445789999999999999999999
Q ss_pred cEEEEeCCCcee---EEEEecccC--ceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeEeecCc--CCEEEEEEEe
Q 002782 517 TACVWRLPDLVS---VVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHT--SSVLRASFLT 588 (882)
Q Consensus 517 ~i~iwd~~~~~~---~~~~~~h~~--~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~--~~v~~~~~s~ 588 (882)
.|.+|+..+... ...-..|.. .|+||.||+||++|++-+.|+++++||++.. +++....+-. -+-+.++|||
T Consensus 340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP 419 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP 419 (641)
T ss_pred ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence 999999855422 223345776 8999999999999999999999999999875 5666655432 3557799999
Q ss_pred CCCEEEEeec------CCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782 589 RGAQIVSCGA------DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (882)
Q Consensus 589 ~g~~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 654 (882)
+.+.|++|.. .|.+.+||..+.+.++.+.-....|..+.|+|--+.|+.|+.||.+++|-..+...
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECccccc
Confidence 9999999865 47899999999999999988888899999999999999999999999998776544
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=4.2e-27 Score=228.70 Aligned_cols=282 Identities=20% Similarity=0.275 Sum_probs=244.2
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEE
Q 002782 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 434 (882)
Q Consensus 355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 434 (882)
.+..+...+. ...+.+|+.|..+.++|..+.+.+..+.||...|..+. ++++... +++++.|..|++|........
T Consensus 221 gi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~--~~~~~~~-v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 221 GITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVK--FHKDLDT-VITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEE--eccchhh-eeecCCcceEEeeccccccCc
Confidence 3445555554 67899999999999999999999999999999999998 8888776 999999999999999888888
Q ss_pred eeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC
Q 002782 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (882)
Q Consensus 435 ~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~ 514 (882)
.....|..+|+.+..+|.|. +|++++.||+..+.|+.++.. + .........-.+++.+|+|||.++.+|+.
T Consensus 297 ~~~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~-------l-t~vs~~~s~v~~ts~~fHpDgLifgtgt~ 367 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQ-------L-TVVSDETSDVEYTSAAFHPDGLIFGTGTP 367 (506)
T ss_pred cccccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcE-------E-EEEeeccccceeEEeeEcCCceEEeccCC
Confidence 88889999999999999988 899999999999999987631 0 11111122345899999999999999999
Q ss_pred CCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc-CCEEEEEEEeCCCEE
Q 002782 515 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRGAQI 593 (882)
Q Consensus 515 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l 593 (882)
||.++|||+.+......|.+|.++|.++.|+.+|-+|++++.|+.|++||++.-+..+++.-.. ..+..+.|.+.|.+|
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeE
Confidence 9999999999999999999999999999999999999999999999999999888888776433 369999999999999
Q ss_pred EEeecCCeEEEEEcC--CCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782 594 VSCGADGLVKLWTVR--TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (882)
Q Consensus 594 ~s~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~ 649 (882)
+.++.|=.|++++-. +..++..+..|.+..+.+.|....++++++|.|..++++.+
T Consensus 448 ~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 448 GIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 999887666666633 56788888889999999999999999999999999988754
No 95
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.3e-28 Score=228.68 Aligned_cols=291 Identities=16% Similarity=0.274 Sum_probs=234.0
Q ss_pred eeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (882)
Q Consensus 343 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 422 (882)
.+....+.||.+.|.+++-.|..-..+++|+.||.|++||+.+..+...+..|.+.|..+. +.. .. ++++++|.+
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~--v~~--~~-~~tvgdDKt 130 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGIC--VTQ--TS-FFTVGDDKT 130 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEE--ecc--cc-eEEecCCcc
Confidence 3455667899999999999987778999999999999999999999999999999999997 333 44 889999999
Q ss_pred EEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEE
Q 002782 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (882)
Q Consensus 423 i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (882)
|+.|-+... ++.++.+ .+.+..+.-+..+. .++++|+ .|.+||..... +...+.-....|.++.|
T Consensus 131 vK~wk~~~~-p~~tilg-~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~~----------Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 131 VKQWKIDGP-PLHTILG-KSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRDN----------PVSSMSWGADSISSVKF 195 (433)
T ss_pred eeeeeccCC-cceeeec-cccccccccccccc-cccccCc--eeeecccccCC----------ccceeecCCCceeEEec
Confidence 999987763 3333332 23444555444433 6788876 48999986432 22333334457899999
Q ss_pred cCCC-cEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCC
Q 002782 503 APND-SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSS 580 (882)
Q Consensus 503 s~~~-~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~ 580 (882)
+|.. .+|+++..|+.|.+||++.+.++..+. -...-..|+|+|.+-.+++|+.|..++.||+..- .++..+.+|.+.
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA 274 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA 274 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhccccee
Confidence 9965 577888899999999999998887665 3445678999998888899999999999999865 567888999999
Q ss_pred EEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec-cCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782 581 VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (882)
Q Consensus 581 v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 654 (882)
|+.+.|||.|+-+++||.|.+|+||.+..+.....+. .....|.++.||.|.+++++|++|+.|++|+....+.
T Consensus 275 V~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 275 VMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred EEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 9999999999999999999999999998876544442 1235799999999999999999999999999775543
No 96
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=6.9e-26 Score=229.62 Aligned_cols=576 Identities=18% Similarity=0.255 Sum_probs=339.6
Q ss_pred CCCEEEEEeC---CeEEEEEcC-CC---ceeeeecCCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeE------
Q 002782 30 DGSFIACACG---ESINIVDLS-NA---SIKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLKCL------ 95 (882)
Q Consensus 30 dg~~la~~~~---~~I~i~d~~-~~---~~~~~l~~~~~~I~~l~~sp-d~~~las~~~dg~i~iwd~~~~~~~------ 95 (882)
.+.+||.-.. +.+-|.-+. .| +.+..+.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|-..
T Consensus 42 S~~flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape 121 (1012)
T KOG1445|consen 42 SADFLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPE 121 (1012)
T ss_pred ccceEEEeecCCCceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcc
Confidence 4556666543 355565553 22 24567788999999999999 4457899999999999999854321
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEEC
Q 002782 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (882)
Q Consensus 96 ~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~ 175 (882)
..+.+..-.|.++.|+|...-|...+..|.+.|||+.+++.+..+.+|...|.++.|+.||.. |++.+.|..|+|||.
T Consensus 122 ~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~l--latscKdkqirifDP 199 (1012)
T KOG1445|consen 122 IDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKL--LATSCKDKQIRIFDP 199 (1012)
T ss_pred eeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCce--EeeecCCcceEEeCC
Confidence 123334567889999997665555556799999999999999999999999999999998765 999999999999998
Q ss_pred C-CCeEEEEecCcccc-eEEEEEccCCCEEEEEeCC----CeEEEEecCCce-eeeeecCcceeeEEEecCCCCCccccc
Q 002782 176 L-AKKCVATLDKHFSR-VTSMAITSDGSTLISAGRD----KVVNLWDLRDYS-CKLTVPTYEMVEAVCAIPPGSAFDSFL 248 (882)
Q Consensus 176 ~-~~~~~~~l~~h~~~-v~~l~~s~~~~~l~s~~~d----g~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (882)
. .++.+++..+|.+. =..+.|..+-..|++.|.+ ..|++||.+... ...++..
T Consensus 200 Ra~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tlel-------------------- 259 (1012)
T KOG1445|consen 200 RASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLEL-------------------- 259 (1012)
T ss_pred ccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEe--------------------
Confidence 7 46788888888763 3456676665677777644 579999987542 1222111
Q ss_pred ccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceee-eeccCCcCcce------------eEEEEc--
Q 002782 249 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI-SFEMDDSKRGF------------TAATVL-- 313 (882)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------~~~~~~-- 313 (882)
.++..-.+-++|.+++.++-..+..... ..+..+..... ...++.
T Consensus 260 --------------------d~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpk 319 (1012)
T KOG1445|consen 260 --------------------DSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPK 319 (1012)
T ss_pred --------------------ecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecch
Confidence 1111123445666665444333332222 11221111000 000000
Q ss_pred -----------------------------------------cCCCcEEEE--------EeCCeEEEEEecccc--c----
Q 002782 314 -----------------------------------------PSNQGLLCV--------TADQQLLLYTTVEVP--E---- 338 (882)
Q Consensus 314 -----------------------------------------~~~~~l~~~--------~~~~~i~~~~~~~~~--~---- 338 (882)
|+....... ..++.+.-.++.... .
T Consensus 320 ral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~p 399 (1012)
T KOG1445|consen 320 RALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPP 399 (1012)
T ss_pred hhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCC
Confidence 000000000 000000000000000 0
Q ss_pred ----c--------------------------------cceeeeeeeecccCCceEEEE----------------------
Q 002782 339 ----K--------------------------------KMELILSKRLVGYNEEILDLK---------------------- 360 (882)
Q Consensus 339 ----~--------------------------------~~~~~~~~~~~~~~~~i~~~~---------------------- 360 (882)
. .......... ....++..+.
T Consensus 400 p~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV-~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g 478 (1012)
T KOG1445|consen 400 PEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAV-PKKEEVRELDYRPYEKENGVHTPNADADSTQG 478 (1012)
T ss_pred CCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCc-CcchhhhhhcccccccccCccCCCcccccccC
Confidence 0 0000000000 0000000000
Q ss_pred ------EeCCCCcEEE------EEEcCCcEEEEeC------------------------------CCceee---------
Q 002782 361 ------FLGEEEQYLA------VATNIEQVQVYDL------------------------------SSMSCS--------- 389 (882)
Q Consensus 361 ------~~~~~~~~l~------~~~~~~~i~i~d~------------------------------~~~~~~--------- 389 (882)
+..+....+. ....-....+... ....++
T Consensus 479 ~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH 558 (1012)
T KOG1445|consen 479 NSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRH 558 (1012)
T ss_pred CCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheee
Confidence 0000000000 0000000000000 000000
Q ss_pred -eeeeCCCcce----EEeee-------eeecCCCEEEE--EeecCCeEEEEeCCCceEEe--eee--cccccEEEEEEcc
Q 002782 390 -YVLAGHSEIV----LCLDT-------CALSSGKILIV--TGSKDNSVRLWDSESRCCVG--VGT--GHMGAVGAVAFSK 451 (882)
Q Consensus 390 -~~~~~~~~~v----~~~~~-------~~~~~~~~~l~--~~~~dg~i~iwd~~~~~~~~--~~~--~~~~~v~~v~~s~ 451 (882)
.--.+|.+.. ..+.. -+..+... ++ ..+..|.|-||+++..-.+. .+. .....|+.+.|.|
T Consensus 559 ~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~r-vAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdP 637 (1012)
T KOG1445|consen 559 VDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKR-VAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDP 637 (1012)
T ss_pred ccCccccchhhhhhhhcccccCCCccCceeeccce-EEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCC
Confidence 0011222211 00000 01112222 22 24557899999987532211 111 2456799999999
Q ss_pred CCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCceeEE
Q 002782 452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVV 530 (882)
Q Consensus 452 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~~~~~ 530 (882)
-....|+.++.||.|++|.+....... ....+...+..|...|+++.|+| -...|++++.|.+|++||+.+++...
T Consensus 638 FD~~rLAVa~ddg~i~lWr~~a~gl~e---~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~ 714 (1012)
T KOG1445|consen 638 FDDERLAVATDDGQINLWRLTANGLPE---NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS 714 (1012)
T ss_pred CChHHeeecccCceEEEEEeccCCCCc---ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh
Confidence 877789999999999999998764322 22335566788999999999999 45789999999999999999999999
Q ss_pred EEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eeeEeecCc-CCEEEEEEEeCCCEEEEeecCC----eEEE
Q 002782 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS-CLKTFEGHT-SSVLRASFLTRGAQIVSCGADG----LVKL 604 (882)
Q Consensus 531 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~dg----~i~i 604 (882)
.+.+|.+.|..++|||||+.+++.+.||+|++|+-.+++ .++.-.+.. ..--.+.|..||++++..+.|. .|.+
T Consensus 715 ~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~ 794 (1012)
T KOG1445|consen 715 RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQM 794 (1012)
T ss_pred eeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhh
Confidence 999999999999999999999999999999999987764 344333322 3345688999999999888764 6888
Q ss_pred EEcCCC--eeEEEe--ccCCCceEEEEEcCC-CCEEEEEeCCCCEEEEECCCHH
Q 002782 605 WTVRTG--ECIATY--DKHEDKIWALAVGKK-TEMFATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 605 wd~~~~--~~~~~~--~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iw~~~~~~ 653 (882)
||..+- ..+.+. +.-... .--.+.+| +-++++|-.|..|.+|++..+.
T Consensus 795 Y~Aq~l~~~pl~t~~lDvaps~-LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 795 YDAQTLDLRPLYTQVLDVAPSP-LVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred hhhhhccCCcceeeeecccCcc-ccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 887542 222222 111110 00112334 3467789999999999887643
No 97
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-26 Score=216.03 Aligned_cols=246 Identities=23% Similarity=0.369 Sum_probs=204.8
Q ss_pred eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEE
Q 002782 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG--LLATAGADRKVLVWD 130 (882)
Q Consensus 53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~--~lasg~~dg~v~vwd 130 (882)
+..+..|..+|+++|.+ +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 45567899999999998 99999999999999999999999999999999999999999776 899999999999999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCC
Q 002782 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK 210 (882)
Q Consensus 131 ~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg 210 (882)
...-.++..+++|.+.|+.++.+|.+. +.++.+.|+.++.||+-.|+.-..++-. ..-+.+.|+|.|.+++.+++++
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~K--LALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGK--LALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCc--eEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEeccE
Confidence 999999999999999999999999765 4888899999999999998866555322 2234489999999999988776
Q ss_pred eEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeec
Q 002782 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290 (882)
Q Consensus 211 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~ 290 (882)
|-+|.+++......+..+
T Consensus 191 -i~i~q~d~A~v~~~i~~~------------------------------------------------------------- 208 (362)
T KOG0294|consen 191 -IDIYQLDNASVFREIENP------------------------------------------------------------- 208 (362)
T ss_pred -EEEEecccHhHhhhhhcc-------------------------------------------------------------
Confidence 778877654322211110
Q ss_pred CCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEE
Q 002782 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA 370 (882)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 370 (882)
..+.++.|. ++..++
T Consensus 209 ---------------------------------------------------------------~r~l~~~~l--~~~~L~ 223 (362)
T KOG0294|consen 209 ---------------------------------------------------------------KRILCATFL--DGSELL 223 (362)
T ss_pred ---------------------------------------------------------------ccceeeeec--CCceEE
Confidence 122333333 667899
Q ss_pred EEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782 371 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (882)
Q Consensus 371 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 431 (882)
+|..++.|.+||..+..+...+.+|...|..+.....|++.+ +++++.||.|++||+...
T Consensus 224 vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~-lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 224 VGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEY-LVTASSDGFIKVWDIDME 283 (362)
T ss_pred EecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceE-EEEeccCceEEEEEcccc
Confidence 999999999999999999999999999999998655666655 999999999999998865
No 98
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.4e-27 Score=220.18 Aligned_cols=294 Identities=20% Similarity=0.295 Sum_probs=244.2
Q ss_pred eeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC------------------ceeeeeeeCCCcceEEeeeee
Q 002782 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS------------------MSCSYVLAGHSEIVLCLDTCA 406 (882)
Q Consensus 345 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~------------------~~~~~~~~~~~~~v~~~~~~~ 406 (882)
....+..|...+.+.+|++ ++.++++|+.|..|+++|++. ...++++..|.+.|.++. |
T Consensus 104 Et~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~--F 180 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD--F 180 (430)
T ss_pred ceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee--e
Confidence 3455667888888889887 899999999999999999861 123667889999999999 8
Q ss_pred ecCCCEEEEEeecCCeEEEEeCCCceEEeeee--cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccc
Q 002782 407 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (882)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 484 (882)
.|.... |++|+.|++|++||+......+.++ ....+|.++.|+|.|. +++.|....++++||+++.+. .
T Consensus 181 HPre~I-LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qc-------f 251 (430)
T KOG0640|consen 181 HPRETI-LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQC-------F 251 (430)
T ss_pred cchhhe-EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeE-------e
Confidence 888876 9999999999999998654333222 2456899999999988 899999999999999987532 1
Q ss_pred cchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec-cc-CceEEEEEcCCCCEEEEeeCCCcEEE
Q 002782 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HK-RGIWSVEFSPVDQVVITASGDKTIKI 562 (882)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~-h~-~~v~~l~~s~~~~~l~s~~~d~~i~i 562 (882)
.....-..|...|+++.+++.|++.++|+.||.|++||--+++++.++.. |. ..|.+..|..+++++++.+.|..+++
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL 331 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence 12223467999999999999999999999999999999999888888764 43 46999999999999999999999999
Q ss_pred EecCCCceeeEeecCc-----CCEEEEEEEeCCCEEEEeec-CCeEEEEEcCCCeeEEEec-cCCCceEEEEEcCCCCEE
Q 002782 563 WSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMF 635 (882)
Q Consensus 563 wd~~~~~~~~~~~~h~-----~~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l 635 (882)
|.+.+++++..+.|-. .--+...|.....|++.-.. .+.+.-||.+++..+..+. +|++.+..+.-||.+..+
T Consensus 332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce
Confidence 9999999999987642 22344567777778776654 4689999999998766554 799999999999999999
Q ss_pred EEEeCCCCEEEEECC
Q 002782 636 ATGGSDALVNLWHDS 650 (882)
Q Consensus 636 ~s~~~dg~i~iw~~~ 650 (882)
+||+.|..+++|...
T Consensus 412 mTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 412 MTCSDDFRARFWYRR 426 (430)
T ss_pred eeecccceeeeeeec
Confidence 999999999999754
No 99
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.2e-27 Score=250.14 Aligned_cols=209 Identities=25% Similarity=0.395 Sum_probs=175.4
Q ss_pred eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeE
Q 002782 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (882)
Q Consensus 387 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i 466 (882)
++...+.||.+.|..+. |+.++ +|++++.|.+||+|++....|+..+. |...|+|++|+|...+++++|+-||.|
T Consensus 360 kP~~ef~GHt~DILDlS--WSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~Kv 434 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLS--WSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKV 434 (712)
T ss_pred cchhhhhccchhheecc--cccCC--eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccce
Confidence 45667889999999997 55544 49999999999999999999999875 999999999999988999999999999
Q ss_pred EEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec--c------cCc
Q 002782 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--H------KRG 538 (882)
Q Consensus 467 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~--h------~~~ 538 (882)
++|++... .......-..-|++++|+|||+..++|+.+|.+++|+....+....+.- | ...
T Consensus 435 RiWsI~d~-----------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~r 503 (712)
T KOG0283|consen 435 RLWSISDK-----------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKR 503 (712)
T ss_pred EEeecCcC-----------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCce
Confidence 99999754 2222233346799999999999999999999999999998877665442 1 227
Q ss_pred eEEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeEeecCcC--CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe
Q 002782 539 IWSVEFSPVDQ-VVITASGDKTIKIWSISDGSCLKTFEGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611 (882)
Q Consensus 539 v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~ 611 (882)
|+.+.|.|... .+++.+.|..|||||..+-.++..|.|+.+ .-....|+.||++|++++.|..|++|+.....
T Consensus 504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred eeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 99999998543 577778999999999998899999988653 44567999999999999999999999985443
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.6e-27 Score=218.25 Aligned_cols=294 Identities=21% Similarity=0.353 Sum_probs=245.0
Q ss_pred eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 002782 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (882)
Q Consensus 52 ~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~ 131 (882)
+++.+.||.+.|..++.......+.+++.|.+-+||.+++|.++..+.||.+.|.++.|++.+.++++++.|++..||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 45677899999999999888889999999999999999999999999999999999999999999999999999999962
Q ss_pred ------CC-----C-----------------------------eEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEE
Q 002782 132 ------DG-----G-----------------------------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (882)
Q Consensus 132 ------~~-----~-----------------------------~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~ 171 (882)
.. + .++..+.+|.+.|.+..|...++. +++++.|.+..
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q--~vTaSWDRTAn 297 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ--MVTASWDRTAN 297 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce--eeeeeccccce
Confidence 11 0 245678899999999999988777 99999999999
Q ss_pred EEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccc
Q 002782 172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 251 (882)
Q Consensus 172 vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (882)
+||++++..+..+.+|....+.++-+|..++++++++|.+.++||++..
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea------------------------------- 346 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA------------------------------- 346 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-------------------------------
Confidence 9999999999999999999999999999999999999999999998631
Q ss_pred hhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEE
Q 002782 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (882)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 331 (882)
T Consensus 347 -------------------------------------------------------------------------------- 346 (481)
T KOG0300|consen 347 -------------------------------------------------------------------------------- 346 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCC
Q 002782 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (882)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 411 (882)
+.....+.||.+.|.+..|.. +..+++|+.|..|++||+.++.....--....++..++ .+..++
T Consensus 347 -----------I~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRva--vs~g~~ 411 (481)
T KOG0300|consen 347 -----------IQSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVA--VSKGHP 411 (481)
T ss_pred -----------cceeeeecccccceeEEEEec--CCceeecCCCceEEEeeeccccCcceeeecCCccceeE--eecCCc
Confidence 111234567888889998874 45789999999999999988765433333445666665 444444
Q ss_pred EEEEEeecCCeEEEEeCCCceEEe----eeecccccEEEEEEccCCC-cEEEEeeCCCeEEEEecCCC
Q 002782 412 ILIVTGSKDNSVRLWDSESRCCVG----VGTGHMGAVGAVAFSKKLQ-NFLVSGSSDHTIKVWSFDGL 474 (882)
Q Consensus 412 ~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~v~~s~~~~-~~l~s~~~dg~i~~wd~~~~ 474 (882)
. ++.-.++..|++||++..+..+ ...+|...|+|++|..+.. .-|++++.|..+.-|++...
T Consensus 412 i-IAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 412 I-IAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred e-EEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 4 8888889999999998765443 3458999999999975432 23889999999999998753
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.6e-26 Score=237.70 Aligned_cols=282 Identities=24% Similarity=0.398 Sum_probs=241.8
Q ss_pred ceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE--EEeecCCCCEEE-EEEcC-CCCEEEEEeCCCcE
Q 002782 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL--RSWKGHDGPAIG-MACHP-SGGLLATAGADRKV 126 (882)
Q Consensus 51 ~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~--~~~~~h~~~V~~-l~fs~-~~~~lasg~~dg~v 126 (882)
++.+.+.||...|..+++.+.. .++++++||++++|+-...+.+ ..+.+|.+-|.. +++.+ ++.+|++|+.|+.|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 4668899999999999877655 7899999999999997655543 456778888877 88886 55569999999999
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEE
Q 002782 127 LVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 206 (882)
Q Consensus 127 ~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~ 206 (882)
.+|...+..++..+++|.+.|.++....++. +++||.|.++++|- .+++...+.+|...|+++..-|++ .++||
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEec
Confidence 9999999999999999999999998766543 89999999999996 466777799999999999999988 88999
Q ss_pred eCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCcee
Q 002782 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286 (882)
Q Consensus 207 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~ 286 (882)
+.|++|++|.-.+
T Consensus 158 saDKtIklWk~~~------------------------------------------------------------------- 170 (745)
T KOG0301|consen 158 SADKTIKLWKGGT------------------------------------------------------------------- 170 (745)
T ss_pred cCcceeeeccCCc-------------------------------------------------------------------
Confidence 9999999997421
Q ss_pred eeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCC
Q 002782 287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 366 (882)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 366 (882)
..+.+.||.+.|..+++.+ +
T Consensus 171 ----------------------------------------------------------~l~tf~gHtD~VRgL~vl~--~ 190 (745)
T KOG0301|consen 171 ----------------------------------------------------------LLKTFSGHTDCVRGLAVLD--D 190 (745)
T ss_pred ----------------------------------------------------------hhhhhccchhheeeeEEec--C
Confidence 1234557888888888884 4
Q ss_pred cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEE
Q 002782 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 446 (882)
Q Consensus 367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 446 (882)
..++++++||.|+.|++ ++.++..+.+|+..+++++ ..+++.. +++++.|++++||+.. .+.+.+....-.|++
T Consensus 191 ~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis--~~~~~~~-Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWs 264 (745)
T KOG0301|consen 191 SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS--MALSDGL-IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWS 264 (745)
T ss_pred CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEE--ecCCCCe-EEEecCCceEEEeecC--ceEEEEecCccceEE
Confidence 58999999999999999 8889999999999999998 6677776 9999999999999977 677777777779999
Q ss_pred EEEccCCCcEEEEeeCCCeEEEEecCCC
Q 002782 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (882)
Q Consensus 447 v~~s~~~~~~l~s~~~dg~i~~wd~~~~ 474 (882)
+.+-++|. +++|+.||.|++|.....
T Consensus 265 a~~L~NgD--Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 265 AKVLLNGD--IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEEeeCCC--EEEeccCceEEEEEeccc
Confidence 99999987 899999999999987744
No 102
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=6.6e-27 Score=231.97 Aligned_cols=303 Identities=20% Similarity=0.281 Sum_probs=231.4
Q ss_pred EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe----EEEEe-cCcccceEEEEEccCCCEEEEEeCCCeE
Q 002782 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK----CVATL-DKHFSRVTSMAITSDGSTLISAGRDKVV 212 (882)
Q Consensus 138 ~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~----~~~~l-~~h~~~v~~l~~s~~~~~l~s~~~dg~i 212 (882)
..+++|+..|+++++.|.|.+ +++|+.|..|++||+.... ..+.+ ......|.++.|++.|..+++.+.....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR--~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGAR--FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred EeccCCceEEEEeeecCCCce--eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 457789999999999998877 9999999999999986432 22233 2334579999999999999988888888
Q ss_pred EEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCC
Q 002782 213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (882)
Q Consensus 213 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~ 292 (882)
+++|-+..+......
T Consensus 239 kl~DRdG~~~~e~~K----------------------------------------------------------------- 253 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSK----------------------------------------------------------------- 253 (641)
T ss_pred eEEccCCceeeeeec-----------------------------------------------------------------
Confidence 888855332211000
Q ss_pred ceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEE
Q 002782 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (882)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 372 (882)
T Consensus 254 -------------------------------------------------------------------------------- 253 (641)
T KOG0772|consen 254 -------------------------------------------------------------------------------- 253 (641)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce-EEeeee-----cccccEEE
Q 002782 373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGT-----GHMGAVGA 446 (882)
Q Consensus 373 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~-----~~~~~v~~ 446 (882)
|.-+|-|+. .-.||...++|-. |.|..+..+++++.||++|+||+...+ .+.++. +..-+++.
T Consensus 254 ---GDQYI~Dm~------nTKGHia~lt~g~--whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 254 ---GDQYIRDMY------NTKGHIAELTCGC--WHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred ---cchhhhhhh------ccCCceeeeeccc--cccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence 111111111 2346777777776 778877778899999999999887543 222222 34457899
Q ss_pred EEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC--CeeEEEEcCCCcEEEEEcCCCcEEEEeCC
Q 002782 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (882)
Q Consensus 447 v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~s~dg~i~iwd~~ 524 (882)
++|++++. .+++|+.||.|.+|+...... .....+..+|.. .|+|+.||+||++|++-+.|+++++||++
T Consensus 323 C~~nrdg~-~iAagc~DGSIQ~W~~~~~~v-------~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 323 CAWNRDGK-LIAAGCLDGSIQIWDKGSRTV-------RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred eecCCCcc-hhhhcccCCceeeeecCCccc-------ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 99999998 699999999999999854321 113344567777 99999999999999999999999999998
Q ss_pred Cce-eEEEEec--ccCceEEEEEcCCCCEEEEeeC------CCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEE
Q 002782 525 DLV-SVVTFRG--HKRGIWSVEFSPVDQVVITASG------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS 595 (882)
Q Consensus 525 ~~~-~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 595 (882)
+.+ ++....+ ...+-+.++|||+.++|++|.. .|++.+||..+...+..+.-....|..+.|+|.=++|+.
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~ 474 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA 474 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheee
Confidence 764 4444443 3345688999999999999864 578999999999999998888899999999999999999
Q ss_pred eecCCeEEEEE
Q 002782 596 CGADGLVKLWT 606 (882)
Q Consensus 596 ~~~dg~i~iwd 606 (882)
|+.||.+++|=
T Consensus 475 gsgdG~~~vyY 485 (641)
T KOG0772|consen 475 GSGDGTAHVYY 485 (641)
T ss_pred ecCCCceEEEE
Confidence 99999999873
No 103
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9e-27 Score=216.88 Aligned_cols=332 Identities=24% Similarity=0.422 Sum_probs=252.5
Q ss_pred EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEE
Q 002782 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215 (882)
Q Consensus 136 ~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 215 (882)
.+..+.||...|+.++... ...++.+++.|.+.++|.++++.|+.++.+|.+.|.++.|++.+.++++++.|++-.||
T Consensus 140 lvre~~GHkDGiW~Vaa~~--tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADS--TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred ehhhhcccccceeeehhhc--CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 3556789999999998755 34579999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCcee
Q 002782 216 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT 295 (882)
Q Consensus 216 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~ 295 (882)
...-.-.+ |.... |.+.. ++
T Consensus 218 ~~av~~~v---P~~~a-------~~~hS---------------------------sE----------------------- 237 (481)
T KOG0300|consen 218 KAAVNWEV---PSNNA-------PSDHS---------------------------SE----------------------- 237 (481)
T ss_pred HHhhcCcC---CCCCC-------CCCCC---------------------------ch-----------------------
Confidence 74321100 00000 00000 00
Q ss_pred eeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcC
Q 002782 296 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 375 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 375 (882)
.+.+.+ | .++. -.+-... .++
T Consensus 238 --eE~e~s---------------------D-------------------------e~~~-d~d~~~~-sD~--------- 258 (481)
T KOG0300|consen 238 --EEEEHS---------------------D-------------------------EHNR-DTDSSEK-SDG--------- 258 (481)
T ss_pred --hhhhcc---------------------c-------------------------cccc-ccccccc-cCC---------
Confidence 000000 0 0000 0000000 000
Q ss_pred CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCc
Q 002782 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 455 (882)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 455 (882)
..|+ .++..+.+|...|.+.+ |...|+. +++++.|.+..+||++++.++..+.+|....+.++-+|..+
T Consensus 259 ~tiR-------vPl~~ltgH~~vV~a~d--WL~gg~Q-~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr- 327 (481)
T KOG0300|consen 259 HTIR-------VPLMRLTGHRAVVSACD--WLAGGQQ-MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQR- 327 (481)
T ss_pred ceee-------eeeeeeeccccceEehh--hhcCcce-eeeeeccccceeeeeccCceeccccCcchhccccccCCcce-
Confidence 1111 12336778999999998 7788887 99999999999999999999999999999999999999854
Q ss_pred EEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-eeEEEEec
Q 002782 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRG 534 (882)
Q Consensus 456 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~ 534 (882)
++++.+.|.+.++||+.. .+.....+++|...|+++.|..+. .+++|+.|.+|++||+++. .++.++.
T Consensus 328 LVvTsSrDtTFRLWDFRe---------aI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR- 396 (481)
T KOG0300|consen 328 LVVTSSRDTTFRLWDFRE---------AIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR- 396 (481)
T ss_pred EEEEeccCceeEeccchh---------hcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-
Confidence 899999999999999983 344677889999999999998765 6789999999999999886 4555665
Q ss_pred ccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceee----EeecCcCCEEEEEEEeCC--CEEEEeecCCeEEEEEcC
Q 002782 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK----TFEGHTSSVLRASFLTRG--AQIVSCGADGLVKLWTVR 608 (882)
Q Consensus 535 h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~i~iwd~~ 608 (882)
-.+++..++.+..+.+++.-..+..|++||+......+ .-.+|..-|.+++|..+. .-|+++|.|..+.-|++.
T Consensus 397 tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 397 TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 56789999999988899999999999999996554322 345899999999998653 358999999999999986
Q ss_pred CC
Q 002782 609 TG 610 (882)
Q Consensus 609 ~~ 610 (882)
..
T Consensus 477 ~p 478 (481)
T KOG0300|consen 477 TP 478 (481)
T ss_pred cc
Confidence 53
No 104
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.7e-25 Score=232.73 Aligned_cols=465 Identities=20% Similarity=0.274 Sum_probs=307.7
Q ss_pred ceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCeeEEEeec
Q 002782 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDK---LLFSSGHSREIRVWDLSTLKCLRSWKG 100 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~---~las~~~dg~i~iwd~~~~~~~~~~~~ 100 (882)
+-+||+|++++++.+++.|.||...||.++..+.+|..+++.+.+.|... ++.+++.+|.|++||+..+.+++++..
T Consensus 21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred ccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 67799999999999999999999999999999999999999999988654 677999999999999999888877653
Q ss_pred CCCCEEEE-----------------------------------------------------------EEcCCCCEEEEEe
Q 002782 101 HDGPAIGM-----------------------------------------------------------ACHPSGGLLATAG 121 (882)
Q Consensus 101 h~~~V~~l-----------------------------------------------------------~fs~~~~~lasg~ 121 (882)
+ .++.++ .+++.|.+.+..
T Consensus 101 ~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~- 178 (792)
T KOG1963|consen 101 N-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV- 178 (792)
T ss_pred C-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-
Confidence 2 222222 222222221111
Q ss_pred CCCcEEEEECCCCeEEEE----eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCC----CeEEEEecCcccceEE
Q 002782 122 ADRKVLVWDVDGGFCTHY----FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA----KKCVATLDKHFSRVTS 193 (882)
Q Consensus 122 ~dg~v~vwd~~~~~~~~~----~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~----~~~~~~l~~h~~~v~~ 193 (882)
.+..+.+|++..+..... -..|.-.+++.++||.++. +++|..||.|.+|.--. ......+.-|...|.+
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~--~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERY--LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccce--EEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 133456666655441111 1247777999999998765 99999999999996433 2234567889999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCC
Q 002782 194 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273 (882)
Q Consensus 194 l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (882)
++|+++|.+|++||..|.+.+|.+.+++...-....
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg-------------------------------------------- 292 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLG-------------------------------------------- 292 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCCcccccccC--------------------------------------------
Confidence 999999999999999999999999987732211122
Q ss_pred CeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccc----ceeeeeeee
Q 002782 274 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK----MELILSKRL 349 (882)
Q Consensus 274 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~ 349 (882)
..+..+.++|++....++..|+.|.+.......... .........
T Consensus 293 -------------------------------s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k 341 (792)
T KOG1963|consen 293 -------------------------------SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK 341 (792)
T ss_pred -------------------------------CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence 334555666666667777777777777664322100 000000001
Q ss_pred cccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeC-----CC------cceEEeeeeeecCCCEEEEEee
Q 002782 350 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-----HS------EIVLCLDTCALSSGKILIVTGS 418 (882)
Q Consensus 350 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----~~------~~v~~~~~~~~~~~~~~l~~~~ 418 (882)
.+..+-...+++.| ..+.++..+..|.|.+||+.+...++.+.. +. ..++.+. .+..|.+ ++++-
T Consensus 342 ~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~--~~~~gs~-maT~E 417 (792)
T KOG1963|consen 342 TRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVA--RSRFGSW-MATLE 417 (792)
T ss_pred ccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeeh--hhccceE-EEEee
Confidence 11223334455555 566777788889999999988776655431 11 2233443 4455665 66653
Q ss_pred --------cC--CeEEEEeCCCceEE-----eeeecccccEEEEEEccCCCc-EEEEeeCCCeEEEEecCCCCCCCCCcc
Q 002782 419 --------KD--NSVRLWDSESRCCV-----GVGTGHMGAVGAVAFSKKLQN-FLVSGSSDHTIKVWSFDGLSDDAEQPM 482 (882)
Q Consensus 419 --------~d--g~i~iwd~~~~~~~-----~~~~~~~~~v~~v~~s~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~ 482 (882)
.| -.+++|-......- .....|...+.+.++.+..+. .+++++.||.+++|-+...........
T Consensus 418 ~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s 497 (792)
T KOG1963|consen 418 ARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSS 497 (792)
T ss_pred eeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCcc
Confidence 22 35778866543321 223468877777777654444 799999999999999976544333333
Q ss_pred cccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCC--CEEEEeeCCCc
Q 002782 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD--QVVITASGDKT 559 (882)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~~d~~ 559 (882)
...+...-.-|..++++++|+.||.+|+++ .|++|.+||..+. +..........++..++|.... ...+.....+.
T Consensus 498 ~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (792)
T KOG1963|consen 498 NWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQR 576 (792)
T ss_pred ceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCce
Confidence 444444444588999999999999777765 5789999999884 3333332233344444443211 12223334578
Q ss_pred EEEEecCCCceee
Q 002782 560 IKIWSISDGSCLK 572 (882)
Q Consensus 560 i~iwd~~~~~~~~ 572 (882)
+.+|++-+.....
T Consensus 577 l~~WNll~~~l~w 589 (792)
T KOG1963|consen 577 LSVWNLLSMSLIW 589 (792)
T ss_pred EehHhhhhhheec
Confidence 9999998776665
No 105
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.7e-25 Score=194.32 Aligned_cols=296 Identities=25% Similarity=0.360 Sum_probs=232.1
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------------eeEEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 002782 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---------------KCLRSWKGHDGPAIGMACHPSGGLLATAGAD 123 (882)
Q Consensus 59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~---------------~~~~~~~~h~~~V~~l~fs~~~~~lasg~~d 123 (882)
++..|.+++|+|.|.+.|+|+.+.+++|--...- .....-+.|.+.|.|.+|||+|.++|+|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 5778999999999999999999999998755321 1112335689999999999999999999999
Q ss_pred CcEEEEECCCCeEE-----EEeecCCCcEEEEEEecC--CCccEEEEEe-CCCcEEEEECCCCeEEEEecCcccceEEEE
Q 002782 124 RKVLVWDVDGGFCT-----HYFKGHKGVVSSILFHPD--TDKSLLFSGS-DDATVRVWDLLAKKCVATLDKHFSRVTSMA 195 (882)
Q Consensus 124 g~v~vwd~~~~~~~-----~~~~~h~~~V~~l~f~~~--~~~~~l~sgs-~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~ 195 (882)
.+|++.......+. ..|.-|.+.|..++|..+ ....+|++++ .|..|.+=|...|+..+.+.+|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal- 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL- 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence 99999877554332 346679999999999644 3445666654 57788888999999999999999999887
Q ss_pred EccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCe
Q 002782 196 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 275 (882)
Q Consensus 196 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 275 (882)
++=+|-.+++|+.|.+|++||++-..++.++....
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~--------------------------------------------- 224 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF--------------------------------------------- 224 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccCcc---------------------------------------------
Confidence 44467899999999999999987544332221100
Q ss_pred EEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCc
Q 002782 276 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 355 (882)
Q Consensus 276 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (882)
|
T Consensus 225 ----------------------------------------------------------------------------~--- 225 (350)
T KOG0641|consen 225 ----------------------------------------------------------------------------H--- 225 (350)
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred eEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEe
Q 002782 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 435 (882)
Q Consensus 356 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 435 (882)
+ + -.....|.+++ ..|.|+. +++|..|....+||+..++.++
T Consensus 226 ---------~----------~----------------glessavaav~--vdpsgrl-l~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 226 ---------D----------G----------------GLESSAVAAVA--VDPSGRL-LASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred ---------C----------C----------------CcccceeEEEE--ECCCcce-eeeccCCCceEEEEeeCCceee
Confidence 0 0 00122344444 6688886 9999999999999999999999
Q ss_pred eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCC
Q 002782 436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD 515 (882)
Q Consensus 436 ~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~d 515 (882)
.+..|...|.++.|+|... ++++++.|..|++-|+...-. ...+..+...|...+..+.|+|..--+++.+.|
T Consensus 268 ~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdla------~el~~~vv~ehkdk~i~~rwh~~d~sfisssad 340 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDLA------HELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD 340 (350)
T ss_pred eeCCCccceeEEEeCCCce-EEEEecccceEEEeecccchh------hcCceEEEEeccCceEEEEecCccceeeeccCc
Confidence 9999999999999999855 899999999999999875411 111344556788888999999999999999999
Q ss_pred CcEEEEeCC
Q 002782 516 RTACVWRLP 524 (882)
Q Consensus 516 g~i~iwd~~ 524 (882)
+++.+|-++
T Consensus 341 kt~tlwa~~ 349 (350)
T KOG0641|consen 341 KTATLWALN 349 (350)
T ss_pred ceEEEeccC
Confidence 999999764
No 106
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-25 Score=210.49 Aligned_cols=289 Identities=15% Similarity=0.228 Sum_probs=233.7
Q ss_pred cEEEEEeCCeEEEEEecccc-----cccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeee
Q 002782 318 GLLCVTADQQLLLYTTVEVP-----EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL 392 (882)
Q Consensus 318 ~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 392 (882)
.+++++....|.-+.+...+ ...+.+...-....|.+.+.+++. ++.++++|++|..|+|||+........+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcce
Confidence 36778888888888877665 223344455566788899999988 6679999999999999999999999999
Q ss_pred eCCCcceEEeeeeeecCCC--EEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEe
Q 002782 393 AGHSEIVLCLDTCALSSGK--ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (882)
Q Consensus 393 ~~~~~~v~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd 470 (882)
-.|.+.|+++. |.++-. . |++|+.||.|.+|+.....++..+.+|.+.|+.++++|.++ +.++.+.|+.++.||
T Consensus 80 l~HagsitaL~--F~~~~S~sh-LlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WN 155 (362)
T KOG0294|consen 80 LSHAGSITALK--FYPPLSKSH-LLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWN 155 (362)
T ss_pred eccccceEEEE--ecCCcchhh-eeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeeh
Confidence 99999999998 666543 5 99999999999999999999999999999999999999988 788999999999999
Q ss_pred cCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCE
Q 002782 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 550 (882)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 550 (882)
+-.+..... ..-....+.+.|+|.|.+++.++.+ .|-+|.+.+......+... ..+.++.|- ++..
T Consensus 156 LV~Gr~a~v-----------~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~ 221 (362)
T KOG0294|consen 156 LVRGRVAFV-----------LNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSE 221 (362)
T ss_pred hhcCcccee-----------eccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCce
Confidence 976632111 1112233459999999999988765 4899999887666655532 456677775 4778
Q ss_pred EEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEE--EeCCCEEEEeecCCeEEEEEcCCC-----eeEEEeccCCCce
Q 002782 551 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF--LTRGAQIVSCGADGLVKLWTVRTG-----ECIATYDKHEDKI 623 (882)
Q Consensus 551 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~--s~~g~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~h~~~v 623 (882)
|++|+.|+.|++||.++..+...+.+|.+.|-.+.+ .|++.+|+|++.||.|++||++.. +.+..++. ..++
T Consensus 222 L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~Rl 300 (362)
T KOG0294|consen 222 LLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRL 300 (362)
T ss_pred EEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCcc
Confidence 999999999999999999999999999999999985 367889999999999999999866 44555543 4555
Q ss_pred EEEEE
Q 002782 624 WALAV 628 (882)
Q Consensus 624 ~~l~~ 628 (882)
+|+..
T Consensus 301 tCl~~ 305 (362)
T KOG0294|consen 301 TCLRV 305 (362)
T ss_pred ceeee
Confidence 55544
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.3e-27 Score=239.97 Aligned_cols=362 Identities=19% Similarity=0.325 Sum_probs=273.2
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCe------EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC-
Q 002782 107 GMACHP-SGGLLATAGADRKVLVWDVDGGF------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK- 178 (882)
Q Consensus 107 ~l~fs~-~~~~lasg~~dg~v~vwd~~~~~------~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~- 178 (882)
++..+. .++||.+||.||.|++|++.... .+..+..|...|..++...+++. |+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~t--lIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKT--LISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCc--eEEecCCceEEEeecccCc
Confidence 344444 56689999999999999985422 46678889999999999888776 999999999999999887
Q ss_pred -eEEEEecCcccceEEEEE-ccCCCEEEEEeCCCeEEEEecCCcee--eeeecCcceeeEEEecCCCCCcccccccchhh
Q 002782 179 -KCVATLDKHFSRVTSMAI-TSDGSTLISAGRDKVVNLWDLRDYSC--KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQ 254 (882)
Q Consensus 179 -~~~~~l~~h~~~v~~l~~-s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (882)
-|..++..|...|.++++ .++...+++||-|+.|.+||+.++.. +....
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n--------------------------- 159 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN--------------------------- 159 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc---------------------------
Confidence 688999999999999999 78888999999999999999986532 10000
Q ss_pred hhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEec
Q 002782 255 TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334 (882)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 334 (882)
T Consensus 160 -------------------------------------------------------------------------------- 159 (735)
T KOG0308|consen 160 -------------------------------------------------------------------------------- 159 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEE
Q 002782 335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 414 (882)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 414 (882)
.........|+...|.+++..+ .+..++.|+..+.+++||..+.+.+..+.||++.|.++. .+++|.. +
T Consensus 160 -------~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll--~~dDGt~-~ 228 (735)
T KOG0308|consen 160 -------NVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL--VNDDGTR-L 228 (735)
T ss_pred -------ccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEE--EcCCCCe-E
Confidence 0000011115566777777665 557888888999999999999999999999999999998 8899988 9
Q ss_pred EEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcC
Q 002782 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494 (882)
Q Consensus 415 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 494 (882)
++++.||+|++||+...+++.++..|...|+++..+|+-. .+.+|+.||.|..=|+.... ....+....
T Consensus 229 ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~----------~~tlick~d 297 (735)
T KOG0308|consen 229 LSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPA----------KSTLICKED 297 (735)
T ss_pred eecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCch----------hheEeecCC
Confidence 9999999999999999999999999999999999998876 79999999999999887641 111122233
Q ss_pred CCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEe
Q 002782 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574 (882)
Q Consensus 495 ~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 574 (882)
.+|..+..+...+-+-+++.|+.|+-|...-.. .+++.+.+.. -+.|....+.+... .+-..+
T Consensus 298 aPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~---------------~l~~s~~~~~-~~T~~~~~~~~~~~-tp~~vi 360 (735)
T KOG0308|consen 298 APVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI---------------ALSVSGDLDF-FSTDSNNHSCDLTN-TPDSVI 360 (735)
T ss_pred CchhhhhhccccCCceeeeccccceecCCcccc---------------ccccCCCCCc-ccccCCCccccccC-CCceec
Confidence 456666666555555778889999999754321 3344444444 23334444444311 222223
Q ss_pred ecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec
Q 002782 575 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617 (882)
Q Consensus 575 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 617 (882)
+| ..++...++..|-+++++-...|.+.+||+-....+..+.
T Consensus 361 ~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 361 PG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred cC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 22 2345556777889999999999999999998777666554
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=6.1e-26 Score=220.67 Aligned_cols=205 Identities=26% Similarity=0.403 Sum_probs=186.4
Q ss_pred ceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC
Q 002782 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~ 102 (882)
++...|....+++|+.+ .+.++|..+++.+.+++||...|+.+.++|+...+++++.|-.|+||.............|.
T Consensus 224 ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~ 303 (506)
T KOG0289|consen 224 ALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHE 303 (506)
T ss_pred EEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccc
Confidence 34455555788898888 89999999999999999999999999999999999999999999999999988888899999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec--CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeE
Q 002782 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (882)
Q Consensus 103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~--h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~ 180 (882)
.+|+.+..+|+|.||++++.|++..+.|+.+|.++..... ..-.+++.+|+||| .++.+|+.||.|++||+.++..
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG--LIFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc--eEEeccCCCceEEEEEcCCccc
Confidence 9999999999999999999999999999999998876653 23458999999986 4599999999999999999999
Q ss_pred EEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcc
Q 002782 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (882)
Q Consensus 181 ~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 230 (882)
+..|.+|.++|..++|+.+|-+|++++.|+.|++||++..+..++++..+
T Consensus 382 ~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 382 VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence 99999999999999999999999999999999999999887776666544
No 109
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.2e-26 Score=223.93 Aligned_cols=286 Identities=26% Similarity=0.369 Sum_probs=227.1
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE----E-------------e-ecCCCcEEEEEEecCC
Q 002782 95 LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH----Y-------------F-KGHKGVVSSILFHPDT 156 (882)
Q Consensus 95 ~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~----~-------------~-~~h~~~V~~l~f~~~~ 156 (882)
......|.-+|.+++++|++++.++++.+++|.=|++.+|+... + - ++|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 56677899999999999999999999999999999998876331 1 0 2688899999999988
Q ss_pred CccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEE
Q 002782 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236 (882)
Q Consensus 157 ~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 236 (882)
.+ |++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|+.|++|+++...
T Consensus 215 ky--latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s--------------- 277 (479)
T KOG0299|consen 215 KY--LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS--------------- 277 (479)
T ss_pred cE--EEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH---------------
Confidence 76 9999999999999999999999999999999999999888889999999999999875322
Q ss_pred ecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCC
Q 002782 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN 316 (882)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (882)
T Consensus 278 -------------------------------------------------------------------------------- 277 (479)
T KOG0299|consen 278 -------------------------------------------------------------------------------- 277 (479)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCC
Q 002782 317 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS 396 (882)
Q Consensus 317 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 396 (882)
.+.++.+|.
T Consensus 278 -----------------------------------------------------------------------~vetlyGHq 286 (479)
T KOG0299|consen 278 -----------------------------------------------------------------------YVETLYGHQ 286 (479)
T ss_pred -----------------------------------------------------------------------HHHHHhCCc
Confidence 112556777
Q ss_pred cceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCC
Q 002782 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (882)
Q Consensus 397 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~ 476 (882)
+.|..++ ...-++. +.+|+.|+++++|++... ....+.+|.+.+.|++|-.+. .+++|+.+|.|.+|++.....
T Consensus 287 d~v~~Id--aL~reR~-vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 287 DGVLGID--ALSRERC-VTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred cceeeec--hhcccce-EEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCc
Confidence 7777777 6666665 777889999999999543 344577889999999998875 489999999999999876542
Q ss_pred CCCCcccccchh--hhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc----eeEEEEecccCceEEEEEcCCCCE
Q 002782 477 DAEQPMNLKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHKRGIWSVEFSPVDQV 550 (882)
Q Consensus 477 ~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~s~~~~~ 550 (882)
............ ....+...|++++..|...++|+|+.+|.|++|-+.++ .++..+. -.+-|++++|+++|+.
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKR 439 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCE
Confidence 211110000000 01122358999999999999999999999999999877 3444444 5677999999999997
Q ss_pred EEEee
Q 002782 551 VITAS 555 (882)
Q Consensus 551 l~s~~ 555 (882)
|++|.
T Consensus 440 ivagi 444 (479)
T KOG0299|consen 440 IVAGI 444 (479)
T ss_pred EEEec
Confidence 77663
No 110
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.2e-26 Score=209.58 Aligned_cols=276 Identities=20% Similarity=0.342 Sum_probs=210.3
Q ss_pred CCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeeE-EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 002782 59 GSDTITALALSP-DDKLLFSSGHSREIRVWDLST-LKCL-RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF 135 (882)
Q Consensus 59 ~~~~I~~l~~sp-d~~~las~~~dg~i~iwd~~~-~~~~-~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~ 135 (882)
.++.|.+++||| ...++++++-||+||+|+++. |..+ +....|.+||.+++|+.||..+++|+.|+.+++||+.++.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 567899999999 455666888899999999987 3433 3345589999999999999999999999999999999994
Q ss_pred EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEE
Q 002782 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215 (882)
Q Consensus 136 ~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 215 (882)
+..+..|.++|.++.|.+...+..|+|||.|.+|+.||.++..++.++.-. ..+.++.. -...++.+..++.|.+|
T Consensus 106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv--~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV--LYPMAVVATAERHIAVY 181 (347)
T ss_pred -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc--cCceeEEEecCCcEEEE
Confidence 667778999999999998877778999999999999999999988887543 44555544 34478888888999999
Q ss_pred ecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCcee
Q 002782 216 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT 295 (882)
Q Consensus 216 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~ 295 (882)
+++.........
T Consensus 182 nL~n~~te~k~~-------------------------------------------------------------------- 193 (347)
T KOG0647|consen 182 NLENPPTEFKRI-------------------------------------------------------------------- 193 (347)
T ss_pred EcCCCcchhhhh--------------------------------------------------------------------
Confidence 886532111000
Q ss_pred eeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcC
Q 002782 296 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 375 (882)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 375 (882)
.....-.+.+++...+. ...+.|+-.
T Consensus 194 -----------------------------------------------------~SpLk~Q~R~va~f~d~-~~~alGsiE 219 (347)
T KOG0647|consen 194 -----------------------------------------------------ESPLKWQTRCVACFQDK-DGFALGSIE 219 (347)
T ss_pred -----------------------------------------------------cCcccceeeEEEEEecC-CceEeeeec
Confidence 00011233455554433 334778888
Q ss_pred CcEEEEeCCCc--eeeeeeeCCCc---------ceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccE
Q 002782 376 EQVQVYDLSSM--SCSYVLAGHSE---------IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444 (882)
Q Consensus 376 ~~i~i~d~~~~--~~~~~~~~~~~---------~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 444 (882)
|.+.+..+..+ .....+++|.. .|.+++ |.|.... |++++.||++.+||-.....+.....|..+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~--FhP~hgt-lvTaGsDGtf~FWDkdar~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA--FHPVHGT-LVTAGSDGTFSFWDKDARTKLKTSETHPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE--eecccce-EEEecCCceEEEecchhhhhhhccCcCCCcc
Confidence 88888887765 44445666652 345565 7887776 9999999999999999888888888999999
Q ss_pred EEEEEccCCCcEEEEeeCC
Q 002782 445 GAVAFSKKLQNFLVSGSSD 463 (882)
Q Consensus 445 ~~v~~s~~~~~~l~s~~~d 463 (882)
++.+|+.+|.-+..+.+.|
T Consensus 297 tcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ceeEecCCCCEEEEEeecc
Confidence 9999999998554444543
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.2e-27 Score=239.38 Aligned_cols=287 Identities=18% Similarity=0.325 Sum_probs=235.7
Q ss_pred EeCCCCcEEEEEEcCCcEEEEeCCCce------eeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc--e
Q 002782 361 FLGEEEQYLAVATNIEQVQVYDLSSMS------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR--C 432 (882)
Q Consensus 361 ~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~ 432 (882)
...+++++|.+|+.||.|++|+..... ....++.|.+.|..+. ...+++. +++++.|-+|.+|+...+ -
T Consensus 32 ~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDii--L~~~~~t-lIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 32 LDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDII--LCGNGKT-LISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred ccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHH--hhcCCCc-eEEecCCceEEEeecccCcch
Confidence 345678899999999999999986432 3567888999999887 4466666 999999999999999877 6
Q ss_pred EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcc-cccchhhhhhcCCCeeEEEEcCCCcEEEE
Q 002782 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM-NLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (882)
Q Consensus 433 ~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 511 (882)
++.++..|...|.|+++-.....++++||-|+.|.+||++.+........ .........++...|.+++..+.|..+++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 77888999999999999444455899999999999999997632111001 11112222378889999999999999999
Q ss_pred EcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCC
Q 002782 512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 591 (882)
Q Consensus 512 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~ 591 (882)
|+..+.+++||.++++.+..++||...|.++..++||..++++|.||+|++||+...+|+.++..|...|+++..+|+-.
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~ 268 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT 268 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782 592 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 592 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~ 650 (882)
.+.+|+.||.|..=|+.+......+-....+|..+..+.+.+-+-++..|+.|+-|...
T Consensus 269 ~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 269 HVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred eEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 99999999999999999854333333345566666666555545666777778777654
No 112
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.4e-26 Score=246.46 Aligned_cols=311 Identities=22% Similarity=0.343 Sum_probs=243.7
Q ss_pred CCCcEEEEEEecCCCccEEEEEe--CCCcEEEEECCC------------CeEEEEecCcccceEEEEEccCCCEEEEEeC
Q 002782 143 HKGVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLA------------KKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (882)
Q Consensus 143 h~~~V~~l~f~~~~~~~~l~sgs--~dg~I~vwd~~~------------~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~ 208 (882)
+...|.++..+||+.. ++||+ .||.+++|+... .+.+.++..|.+.|.|+.|+|||++|++|+.
T Consensus 12 ~~~~IfSIdv~pdg~~--~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK--FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred CCeeEEEEEecCCcee--EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 3456899999999877 99999 899999998642 3456677889999999999999999999999
Q ss_pred CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeee
Q 002782 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (882)
Q Consensus 209 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~ 288 (882)
|+.|.+|..... .. +. +.++..
T Consensus 90 D~~v~iW~~~~~-~~-----------------~~-------------------------~fgs~g--------------- 111 (942)
T KOG0973|consen 90 DRLVMIWERAEI-GS-----------------GT-------------------------VFGSTG--------------- 111 (942)
T ss_pred cceEEEeeeccc-CC-----------------cc-------------------------cccccc---------------
Confidence 999999986520 00 00 000000
Q ss_pred ecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcE
Q 002782 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (882)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 368 (882)
T Consensus 112 -------------------------------------------------------------------------------- 111 (942)
T KOG0973|consen 112 -------------------------------------------------------------------------------- 111 (942)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEE
Q 002782 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (882)
Q Consensus 369 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~ 448 (882)
| .-+.+..++...+.+|...|..+. ++|++.. +++++.|++|.+||..+...+..+.+|.+.|..+.
T Consensus 112 -------~---~~~vE~wk~~~~l~~H~~DV~Dv~--Wsp~~~~-lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs 178 (942)
T KOG0973|consen 112 -------G---AKNVESWKVVSILRGHDSDVLDVN--WSPDDSL-LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVS 178 (942)
T ss_pred -------c---ccccceeeEEEEEecCCCccceec--cCCCccE-EEEecccceEEEEccccceeeeeeecccccccceE
Confidence 0 012344556668888999998888 8898887 99999999999999999999999999999999999
Q ss_pred EccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEc----CCCcEEEEeCC
Q 002782 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS----QDRTACVWRLP 524 (882)
Q Consensus 449 ~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s----~dg~i~iwd~~ 524 (882)
|.|-|+ ++++-+.|++|++|++....-... .............+..+.|||||.+|++.- .-.++.|.+-.
T Consensus 179 ~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~----It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~ 253 (942)
T KOG0973|consen 179 WDPIGK-YFASQSDDRTLKVWRTSDWGIEKS----ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG 253 (942)
T ss_pred ECCccC-eeeeecCCceEEEEEcccceeeEe----eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC
Confidence 999998 899999999999999665311000 000000111234567899999999999853 23468899988
Q ss_pred CceeEEEEecccCceEEEEEcCC-----CC------------EEEEeeCCCcEEEEecCCCceeeEee-cCcCCEEEEEE
Q 002782 525 DLVSVVTFRGHKRGIWSVEFSPV-----DQ------------VVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASF 586 (882)
Q Consensus 525 ~~~~~~~~~~h~~~v~~l~~s~~-----~~------------~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~ 586 (882)
+.+.-..|-||..++.++.|+|. .+ .+|+|+.|++|-||.....+++.... -...+|..++|
T Consensus 254 tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsW 333 (942)
T KOG0973|consen 254 TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSW 333 (942)
T ss_pred CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeE
Confidence 88888999999999999999981 11 78899999999999987766654432 24578999999
Q ss_pred EeCCCEEEEeecCCeEEEEEcCCCe
Q 002782 587 LTRGAQIVSCGADGLVKLWTVRTGE 611 (882)
Q Consensus 587 s~~g~~l~s~~~dg~i~iwd~~~~~ 611 (882)
+|||..|+.++.||+|.+......+
T Consensus 334 spdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 334 SPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred cCCCCeEEEEecCCeEEEEEcchHH
Confidence 9999999999999999999987644
No 113
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.9e-25 Score=241.59 Aligned_cols=215 Identities=20% Similarity=0.290 Sum_probs=178.3
Q ss_pred eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC-cEEEEEcC
Q 002782 436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQ 514 (882)
Q Consensus 436 ~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~la~~s~ 514 (882)
.+.+|.+.|.+++|+|....+|++++.|++|++||+....... ........+.+|...|.+++|+|++ .+|++++.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 4678999999999999434489999999999999997542110 0112344567899999999999985 79999999
Q ss_pred CCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCC-EEEEEEEeCCCEE
Q 002782 515 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGAQI 593 (882)
Q Consensus 515 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~s~~g~~l 593 (882)
|++|+|||+.+++....+.+|...|.+++|+|++.+|++++.|++|++||+++++.+.++.+|.+. +..+.|.+++..+
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999999999999999999999999999999999999999999999999999999999999865 4567889988888
Q ss_pred EEee----cCCeEEEEEcCCCe-eEEEeccC-CCceEEEEEcCCCCEEEEEe-CCCCEEEEECCCHH
Q 002782 594 VSCG----ADGLVKLWTVRTGE-CIATYDKH-EDKIWALAVGKKTEMFATGG-SDALVNLWHDSTAA 653 (882)
Q Consensus 594 ~s~~----~dg~i~iwd~~~~~-~~~~~~~h-~~~v~~l~~s~~~~~l~s~~-~dg~i~iw~~~~~~ 653 (882)
++++ .|+.|++||+++.. ++.....+ ...+....|++++++|++++ .|+.|++|++.++.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 8765 47899999998754 44444333 34566678999999999888 59999999998754
No 114
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=2.9e-25 Score=240.54 Aligned_cols=234 Identities=16% Similarity=0.258 Sum_probs=189.6
Q ss_pred EeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC
Q 002782 416 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (882)
Q Consensus 416 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (882)
.|+.++.+++|+......+..+.+|.+.|.+++|+|+...+|++|+.|++|++||+......... .......+.+|..
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--i~~p~~~L~gH~~ 126 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--IKDPQCILKGHKK 126 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc--cccceEEeecCCC
Confidence 35567889999988888888899999999999999985568999999999999999754211000 0012334567999
Q ss_pred CeeEEEEcCCCcE-EEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEe
Q 002782 496 DINSLAVAPNDSL-VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574 (882)
Q Consensus 496 ~i~~~~~s~~~~~-la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 574 (882)
.|.+++|+|++.. +++++.|++|++||+.+++....+. |...|.+++|+|+|.+|++++.|+.|+|||+++++++.++
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 9999999999875 5789999999999999998877776 6678999999999999999999999999999999999999
Q ss_pred ecCcCCEEEE-----EEEeCCCEEEEeecCC----eEEEEEcCC-CeeEEEec--cCCCceEEEEEcCCCCEEEEEeCCC
Q 002782 575 EGHTSSVLRA-----SFLTRGAQIVSCGADG----LVKLWTVRT-GECIATYD--KHEDKIWALAVGKKTEMFATGGSDA 642 (882)
Q Consensus 575 ~~h~~~v~~~-----~~s~~g~~l~s~~~dg----~i~iwd~~~-~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg 642 (882)
.+|.+.+... .|++++.+|++++.|+ .|+|||+++ ++++..+. .+.+.+......++|.++++|+.|+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 9998875443 3457889999988775 799999995 56665543 3334444444566788999999999
Q ss_pred CEEEEECCCH
Q 002782 643 LVNLWHDSTA 652 (882)
Q Consensus 643 ~i~iw~~~~~ 652 (882)
.|++|++..+
T Consensus 286 tIr~~e~~~~ 295 (568)
T PTZ00420 286 NCRYYQHSLG 295 (568)
T ss_pred eEEEEEccCC
Confidence 9999999765
No 115
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=4.1e-26 Score=224.41 Aligned_cols=254 Identities=20% Similarity=0.366 Sum_probs=215.1
Q ss_pred eCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE----------EeeeecccccEEEEEEccCCCcEEEEeeC
Q 002782 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----------VGVGTGHMGAVGAVAFSKKLQNFLVSGSS 462 (882)
Q Consensus 393 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~v~~v~~s~~~~~~l~s~~~ 462 (882)
-.|.+.|..+. ..|....++++++..+.+.|||..+-.- -..+.+|...-.+++|++.....+++++.
T Consensus 121 i~h~gEVnRaR--ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 121 INHDGEVNRAR--YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred ccCCccchhhh--hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 35778888777 7788888899999999999999764221 12577898878889999988889999999
Q ss_pred CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCC--CceeEEEEecccCce
Q 002782 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP--DLVSVVTFRGHKRGI 539 (882)
Q Consensus 463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~--~~~~~~~~~~h~~~v 539 (882)
|++|.+||+...... .....+...+.+|...|..++|+| +..++++++.|+.+.|||++ +.++.....+|..+|
T Consensus 199 d~~i~lwdi~~~~~~---~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 199 DHTICLWDINAESKE---DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred CCcEEEEeccccccC---CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 999999999876432 223446677889999999999999 56789999999999999999 567777888999999
Q ss_pred EEEEEcC-CCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEeCC-CEEEEeecCCeEEEEEcCC-------
Q 002782 540 WSVEFSP-VDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRT------- 609 (882)
Q Consensus 540 ~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~iwd~~~------- 609 (882)
+|++|+| ++.+|||||.|++|++||+++- .++.++++|...|.++.|+|+. ..|+|++.|+.+.|||+..
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 9999999 5568899999999999999875 5789999999999999999964 5789999999999999863
Q ss_pred -------CeeEEEeccCCCceEEEEEcCCCCE-EEEEeCCCCEEEEECCC
Q 002782 610 -------GECIATYDKHEDKIWALAVGKKTEM-FATGGSDALVNLWHDST 651 (882)
Q Consensus 610 -------~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg~i~iw~~~~ 651 (882)
.+++...-||...|..+.|.|+..+ |+|.+.|+.+.||+...
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1345677799999999999999885 66889999999999873
No 116
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=9.9e-25 Score=236.46 Aligned_cols=248 Identities=15% Similarity=0.194 Sum_probs=196.2
Q ss_pred EEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce--------EEeeeeccccc
Q 002782 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--------CVGVGTGHMGA 443 (882)
Q Consensus 372 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~ 443 (882)
|+..+.+++|+.........+.+|.+.|.+++ ++|....++++|+.||+|++||+.++. .+..+.+|...
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~la--fsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQ--FNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEE--EcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 44567899999888888888999999999999 888744449999999999999997642 33467889999
Q ss_pred EEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC
Q 002782 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (882)
Q Consensus 444 v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~ 523 (882)
|.+++|+|++..++++++.|++|++||+.... ..... .|...|.+++|+|+|.+|++++.|+.|+|||+
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~----------~~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK----------RAFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCc----------EEEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEEC
Confidence 99999999988778899999999999998652 11111 25568999999999999999999999999999
Q ss_pred CCceeEEEEecccCceE-----EEEEcCCCCEEEEeeCCC----cEEEEecCC-CceeeEeec--CcCCEEEEEEEeCCC
Q 002782 524 PDLVSVVTFRGHKRGIW-----SVEFSPVDQVVITASGDK----TIKIWSISD-GSCLKTFEG--HTSSVLRASFLTRGA 591 (882)
Q Consensus 524 ~~~~~~~~~~~h~~~v~-----~l~~s~~~~~l~s~~~d~----~i~iwd~~~-~~~~~~~~~--h~~~v~~~~~s~~g~ 591 (882)
++++.+..+.+|.+.+. ...|++++.+|++++.|+ +|+|||+++ +.++..+.. +.+.+...-..++|.
T Consensus 197 Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 197 RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence 99999999999987643 334568999999988774 799999985 566665543 333343333455688
Q ss_pred EEEEeecCCeEEEEEcCCCeeE--EEeccCCCceEEEEEcCCCC
Q 002782 592 QIVSCGADGLVKLWTVRTGECI--ATYDKHEDKIWALAVGKKTE 633 (882)
Q Consensus 592 ~l~s~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s~~~~ 633 (882)
++++|+.|+.|++|++..+... ..+. +..++.+++|.|...
T Consensus 277 l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc
Confidence 9999999999999999877532 2222 567788999999653
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.9e-25 Score=204.81 Aligned_cols=270 Identities=23% Similarity=0.291 Sum_probs=203.8
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEE-EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC
Q 002782 100 GHDGPAIGMACHP-SGGLLATAGADRKVLVWDVDG-GFCT-HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (882)
Q Consensus 100 ~h~~~V~~l~fs~-~~~~lasg~~dg~v~vwd~~~-~~~~-~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~ 176 (882)
.....|.+++||| ...+++.||.|++|++|+++. |... .....|.++|.+++|+.|+.. +++|+.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgsk--Vf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSK--VFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCce--EEeeccCCceEEEEcc
Confidence 3568899999999 556677899999999999976 3332 344569999999999999866 9999999999999999
Q ss_pred CCeEEEEecCcccceEEEEEccCCC--EEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhh
Q 002782 177 AKKCVATLDKHFSRVTSMAITSDGS--TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQ 254 (882)
Q Consensus 177 ~~~~~~~l~~h~~~v~~l~~s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (882)
++ .+..+..|.++|..+.|-+... .|++|+-|++|+.||.+....+.++..++.+.++..
T Consensus 103 S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv----------------- 164 (347)
T KOG0647|consen 103 SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV----------------- 164 (347)
T ss_pred CC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc-----------------
Confidence 99 5667788999999999987665 899999999999999998777666655443322111
Q ss_pred hhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEec
Q 002782 255 TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334 (882)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 334 (882)
T Consensus 165 -------------------------------------------------------------------------------- 164 (347)
T KOG0647|consen 165 -------------------------------------------------------------------------------- 164 (347)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeee-ee-CCCcceEEeeeeeecCCCE
Q 002782 335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LA-GHSEIVLCLDTCALSSGKI 412 (882)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~-~~~~~v~~~~~~~~~~~~~ 412 (882)
...++++++.+..|.+|+++.+..... .. .-.-.+.|++ ...+...
T Consensus 165 ------------------------------~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va--~f~d~~~ 212 (347)
T KOG0647|consen 165 ------------------------------LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA--CFQDKDG 212 (347)
T ss_pred ------------------------------cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE--EEecCCc
Confidence 122556666666777777754432211 11 1223467777 6667666
Q ss_pred EEEEeecCCeEEEEeCCCc--eEEeeeeccc---------ccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCc
Q 002782 413 LIVTGSKDNSVRLWDSESR--CCVGVGTGHM---------GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481 (882)
Q Consensus 413 ~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~---------~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 481 (882)
.+.|+-+|.+-+..+..+ +.-..++.|. ..|.+++|+|... .|++++.||+..+||-+...
T Consensus 213 -~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~------ 284 (347)
T KOG0647|consen 213 -FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDART------ 284 (347)
T ss_pred -eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhh------
Confidence 699999999999988775 3333455554 3688899999866 79999999999999976432
Q ss_pred ccccchhhhhhcCCCeeEEEEcCCCcEEEEEc
Q 002782 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS 513 (882)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s 513 (882)
.......|..+|+|.+|+.+|.++|.+.
T Consensus 285 ----kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 285 ----KLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ----hhhccCcCCCccceeEecCCCCEEEEEe
Confidence 3444567899999999999999998764
No 118
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=3.6e-24 Score=217.23 Aligned_cols=149 Identities=21% Similarity=0.341 Sum_probs=125.2
Q ss_pred CCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCc-------eeEEEEecccCceEEEEEcC-CCCEEEEeeCCCcEEEEe
Q 002782 494 GKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-------VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWS 564 (882)
Q Consensus 494 ~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd 564 (882)
+..|+.+.|.| |...||+++.||.|++|.+..+ .+...+.+|...|+++.|+| ....|++++.|.+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 45678889998 7789999999999999998653 55677889999999999999 456899999999999999
Q ss_pred cCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe-eEEEeccCC-CceEEEEEcCCCCEEEEEeCCC
Q 002782 565 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-CIATYDKHE-DKIWALAVGKKTEMFATGGSDA 642 (882)
Q Consensus 565 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg 642 (882)
+.+++....+.+|++.|..++|||+|+.+++.+.||.|++|+.++++ .+..-.+.- .+-..+.|.-||++++..|-|.
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 99999999999999999999999999999999999999999998775 444433322 2223456777999988887664
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.9e-25 Score=217.03 Aligned_cols=310 Identities=19% Similarity=0.293 Sum_probs=230.3
Q ss_pred CcEEEEECCCCeeEEEeecC-CCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCcc
Q 002782 82 REIRVWDLSTLKCLRSWKGH-DGPAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159 (882)
Q Consensus 82 g~i~iwd~~~~~~~~~~~~h-~~~V~~l~fs~~~~~lasg~-~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~ 159 (882)
..+.+||+.+|....++++. ...-.++..- .+.|++++. .-..|.+|.+......+...--.++|.+++-+|+|.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~-- 94 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGY-- 94 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCce--
Confidence 45999999999999999875 2222222111 235666665 446899999976655443333578899999999765
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecC
Q 002782 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239 (882)
Q Consensus 160 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 239 (882)
+|+.|+..|.|++|.+.+|..+..+.+|...|+++.|+.||.++++||.||.|.+|.+.+.
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l------------------- 155 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL------------------- 155 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee-------------------
Confidence 4888889999999999999999999999999999999999999999999999999986320
Q ss_pred CCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcE
Q 002782 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319 (882)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (882)
T Consensus 156 -------------------------------------------------------------------------------- 155 (476)
T KOG0646|consen 156 -------------------------------------------------------------------------------- 155 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcce
Q 002782 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399 (882)
Q Consensus 320 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v 399 (882)
T Consensus 156 -------------------------------------------------------------------------------- 155 (476)
T KOG0646|consen 156 -------------------------------------------------------------------------------- 155 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCC-CcEEEEeeCCCeEEEEecCCCCCCC
Q 002782 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDA 478 (882)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~-~~~l~s~~~dg~i~~wd~~~~~~~~ 478 (882)
+.+..++ +-.++..+..|.-+|+.+...+.+ ...++++|.|.++++||+..+
T Consensus 156 ---------------v~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---- 208 (476)
T KOG0646|consen 156 ---------------VSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---- 208 (476)
T ss_pred ---------------cccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc----
Confidence 0000000 111222233455555555554432 236999999999999999876
Q ss_pred CCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCC----------------ceeEEEEecccC--ceE
Q 002782 479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD----------------LVSVVTFRGHKR--GIW 540 (882)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~----------------~~~~~~~~~h~~--~v~ 540 (882)
...........+.+++++|-++.+.+|+.+|.|.+.++.. +..+..+.||.. +|+
T Consensus 209 -------~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 209 -------VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred -------eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 2222233556899999999999999999999999987643 345667889988 999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEE-eecCCeEEEEEc
Q 002782 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS-CGADGLVKLWTV 607 (882)
Q Consensus 541 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~i~iwd~ 607 (882)
|++++-||.+|++|+.||.|+|||+.+.+|++++....++|+.+.+.|--+-.+. -+..-.+-.|++
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence 9999999999999999999999999999999999877889999999664333222 222234455544
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-25 Score=202.49 Aligned_cols=249 Identities=25% Similarity=0.402 Sum_probs=204.0
Q ss_pred eeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc---eEEeeeecccccEEEEEEc-cCCCcEEEEeeCCCeEE
Q 002782 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIK 467 (882)
Q Consensus 392 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~s-~~~~~~l~s~~~dg~i~ 467 (882)
-..|.+.|.... ..--|++ |++++.|++|+|+...+. ..+..+.+|.++|+.++|. |.-..+|++++.||.|.
T Consensus 7 dt~H~D~IHda~--lDyygkr-lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 7 DTQHEDMIHDAQ--LDYYGKR-LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhHhh--hhhhcce-eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 346777777665 4455777 999999999999998754 5678899999999999995 55556999999999999
Q ss_pred EEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC--CcEEEEEcCCCcEEEEeCCCc---eeEEEEecccCceEEE
Q 002782 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL---VSVVTFRGHKRGIWSV 542 (882)
Q Consensus 468 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~la~~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l 542 (882)
+|.-..+ ..........|...|++++|.|. |-.||+++.||.|.|.+.++. ........|.-+|+++
T Consensus 84 iWke~~g--------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 84 IWKEENG--------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred EEecCCC--------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence 9997654 34456667889999999999996 578999999999999988654 2234456799999999
Q ss_pred EEcCC---C-----------CEEEEeeCCCcEEEEecCCC--ceeeEeecCcCCEEEEEEEeCC----CEEEEeecCCeE
Q 002782 543 EFSPV---D-----------QVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRG----AQIVSCGADGLV 602 (882)
Q Consensus 543 ~~s~~---~-----------~~l~s~~~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~s~~g----~~l~s~~~dg~i 602 (882)
+|.|. | +.|++|+.|..|+||+..++ ..-++|++|.+.|..++|.|.- .+|++++.||++
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 99996 4 57999999999999999876 3446699999999999999964 479999999999
Q ss_pred EEEEcCCC--e-eEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782 603 KLWTVRTG--E-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (882)
Q Consensus 603 ~iwd~~~~--~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~ 651 (882)
.||..... + ....+......+|.+.||..|+.|+.++.|+.+.+|+-..
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 99986521 1 1223344678899999999999999999999999998654
No 121
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.2e-23 Score=185.12 Aligned_cols=284 Identities=20% Similarity=0.285 Sum_probs=229.1
Q ss_pred cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC------ce-----e----eeeeeCCCcceEEeeeeeecCCCEEEEE
Q 002782 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS------MS-----C----SYVLAGHSEIVLCLDTCALSSGKILIVT 416 (882)
Q Consensus 352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~------~~-----~----~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 416 (882)
....|..++|.| .+.+.++|+++..+++..... +. . ...-.-|.+.|.|.+ |+|.|.. +++
T Consensus 31 dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~--ws~~gel-iat 106 (350)
T KOG0641|consen 31 DSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA--WSPCGEL-IAT 106 (350)
T ss_pred chhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE--ecCccCe-EEe
Confidence 446788899988 778999999999999864321 11 0 112235889999998 9999997 999
Q ss_pred eecCCeEEEEeCCCceEE-----eeeecccccEEEEEEccC---CCcEEEEee-CCCeEEEEecCCCCCCCCCcccccch
Q 002782 417 GSKDNSVRLWDSESRCCV-----GVGTGHMGAVGAVAFSKK---LQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAK 487 (882)
Q Consensus 417 ~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~v~~s~~---~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~ 487 (882)
|+.|.+|++..++...+- ..+.-|.+.|..++|-.+ +..+|++++ .|..|++-|...+. ..
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~----------~~ 176 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ----------GF 176 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC----------cc
Confidence 999999999876654432 246679999999999543 344666664 45666666766543 45
Q ss_pred hhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec--c-----cCceEEEEEcCCCCEEEEeeCCCcE
Q 002782 488 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--H-----KRGIWSVEFSPVDQVVITASGDKTI 560 (882)
Q Consensus 488 ~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~--h-----~~~v~~l~~s~~~~~l~s~~~d~~i 560 (882)
..+.+|.+.|.++ ++-+|-++++|++|.+|++||++-...+.++.. | .+.|.+++..|.|++|++|-.|...
T Consensus 177 ~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc 255 (350)
T KOG0641|consen 177 HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSC 255 (350)
T ss_pred eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCce
Confidence 5567888888776 355788999999999999999988877777653 2 3579999999999999999999999
Q ss_pred EEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCC----eeEEEeccCCCceEEEEEcCCCCEEE
Q 002782 561 KIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG----ECIATYDKHEDKIWALAVGKKTEMFA 636 (882)
Q Consensus 561 ~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~s~~~~~l~ 636 (882)
.+||++.++.++.|..|...|.++.|+|...||++++.|..|++-|+... -.+.....|.+.+..+.|+|..--++
T Consensus 256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfi 335 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFI 335 (350)
T ss_pred EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceee
Confidence 99999999999999999999999999999999999999999999998632 23444557999999999999999999
Q ss_pred EEeCCCCEEEEECC
Q 002782 637 TGGSDALVNLWHDS 650 (882)
Q Consensus 637 s~~~dg~i~iw~~~ 650 (882)
+.+.|.++.+|-+.
T Consensus 336 sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 336 SSSADKTATLWALN 349 (350)
T ss_pred eccCcceEEEeccC
Confidence 99999999999764
No 122
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.94 E-value=9.2e-23 Score=208.29 Aligned_cols=477 Identities=13% Similarity=0.153 Sum_probs=304.8
Q ss_pred ceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC
Q 002782 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG 103 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~ 103 (882)
.++|-|||..|+.+.++.+.+||+..|.++.++++|.+.|.|+|||.||+.+|+|+.|..|.+|+-+-.-. ... .|..
T Consensus 17 d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkY-SH~D 94 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKY-SHND 94 (1081)
T ss_pred eeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eee-ccCC
Confidence 49999999999999999999999999999999999999999999999999999999999999998543222 122 3899
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEE
Q 002782 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183 (882)
Q Consensus 104 ~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~ 183 (882)
.|.||.|+|-...|++++- ...-+|..+....... .....+.+++|..||.. ++.|-.+|+|.+=+- +++....
T Consensus 95 ~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqy--lalG~~nGTIsiRNk-~gEek~~ 168 (1081)
T KOG1538|consen 95 AIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQY--LALGMFNGTISIRNK-NGEEKVK 168 (1081)
T ss_pred eeeEeecCchHHHhhhcch-hhccccChhhhhHHhh--hhheeEEEeeecCCCcE--EEEeccCceEEeecC-CCCcceE
Confidence 9999999999999999875 4466888765433211 13467888999988765 999999999999864 3443333
Q ss_pred e---cCcccceEEEEEccCC-----CEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhh
Q 002782 184 L---DKHFSRVTSMAITSDG-----STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (882)
Q Consensus 184 l---~~h~~~v~~l~~s~~~-----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (882)
+ .+..++|++++|+|.. ..++...-..++.++.+.....-+.....-...++...++|.
T Consensus 169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGE------------- 235 (1081)
T KOG1538|consen 169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGE------------- 235 (1081)
T ss_pred EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCc-------------
Confidence 3 3467799999999864 467777778888888876554444444444555666666665
Q ss_pred hhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecc
Q 002782 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (882)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 335 (882)
++..||.++.+.+|..++-.+-.. .+...-+..+...|+++.++.+..||++..|++..
T Consensus 236 ----------y~LiGGsdk~L~~fTR~GvrLGTv-----------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 236 ----------YILLGGSDKQLSLFTRDGVRLGTV-----------GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ----------EEEEccCCCceEEEeecCeEEeec-----------cccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 788999999999998665422111 12335677888899999999999999999998764
Q ss_pred ccccc------------ceeeeeeeecccCCceEEEEE---eCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeC-CCcce
Q 002782 336 VPEKK------------MELILSKRLVGYNEEILDLKF---LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-HSEIV 399 (882)
Q Consensus 336 ~~~~~------------~~~~~~~~~~~~~~~i~~~~~---~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v 399 (882)
..-.. ..........+....|.+-.. ..--.+.+++.-. ..|.+|.+.++.....-.. .....
T Consensus 295 STVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLp-eki~iYel~se~~~~mhY~v~ekI~ 373 (1081)
T KOG1538|consen 295 STVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLP-EKILIYELYSEDLSDMHYRVKEKII 373 (1081)
T ss_pred hHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheeccc-ceEEEEeccccccccchhHHHHHHH
Confidence 32100 000000000111111111000 0012234454443 4677777765543221100 00000
Q ss_pred EEeeee-eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEE--EEccCCCcEEEEeeCCCeEEEEecCCCCC
Q 002782 400 LCLDTC-ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (882)
Q Consensus 400 ~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v--~~s~~~~~~l~s~~~dg~i~~wd~~~~~~ 476 (882)
..+++. ..-.++. ++. +.+..+..+|+..-.... . .-.+-|.-+ .-.|-++.-++.|..+|.|.-.=++..
T Consensus 374 kkf~cSLlVVc~~H-iVl-CqekrLqClDF~Gvk~Re-W-~M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~-- 447 (1081)
T KOG1538|consen 374 KKFECSLLVVCANH-IVL-CQEKRLQCLDFSGVKERE-W-QMESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNL-- 447 (1081)
T ss_pred hhccceEEEEEcCe-EEE-Ecccceeeecccchhhhh-h-hHHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCC--
Confidence 000000 1111222 222 345566666655321100 0 000111111 113445556888888887654333322
Q ss_pred CCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC
Q 002782 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 556 (882)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 556 (882)
....+......|.|+.++.+.+.||+....++..++|+.+++.+.. ..++.+++|+....-++.-+.
T Consensus 448 ---------~PiLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~Q----Epg~nSV~wNT~~E~MlcfT~ 514 (1081)
T KOG1538|consen 448 ---------FPILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQ----EPGANSVAWNTQCEDMLCFTG 514 (1081)
T ss_pred ---------chhheecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEee----cCCCceEEeeccccceEEEec
Confidence 1222233456899999999999999999999999999999887653 456888999875443333333
Q ss_pred CCcEEE
Q 002782 557 DKTIKI 562 (882)
Q Consensus 557 d~~i~i 562 (882)
.|.+.|
T Consensus 515 ~g~L~V 520 (1081)
T KOG1538|consen 515 GGYLNV 520 (1081)
T ss_pred CCceEE
Confidence 355444
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=6.9e-25 Score=215.86 Aligned_cols=252 Identities=25% Similarity=0.449 Sum_probs=212.2
Q ss_pred eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCcee----------eeeeeCCCcceEEeeeeeecCCCEEEEE
Q 002782 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC----------SYVLAGHSEIVLCLDTCALSSGKILIVT 416 (882)
Q Consensus 347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 416 (882)
.....|.++|..+++.|.+..++++.+..+.+.|||...... ...+.+|...-.++. +++.....+++
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~gls--Wn~~~~g~Lls 195 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLS--WNRQQEGTLLS 195 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccc--cccccceeEee
Confidence 344568899999999999999999999999999999764221 226789998767776 77776667999
Q ss_pred eecCCeEEEEeCCCce-------EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhh
Q 002782 417 GSKDNSVRLWDSESRC-------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (882)
Q Consensus 417 ~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 489 (882)
++.|++|++||+.... ....+.+|...|..++|++....++++++.|+.+.+||++.. ..+....
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--------~~~~~~~ 267 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--------TSKPSHS 267 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--------CCCCccc
Confidence 9999999999987532 345678999999999999998889999999999999999863 1225566
Q ss_pred hhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCC-CCEEEEeeCCCcEEEEecC
Q 002782 490 VAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSIS 566 (882)
Q Consensus 490 ~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~ 566 (882)
..+|..+|+|++|+| ++.+||+||.|++|++||+++. .++.++.+|...|..|.|||. ...||+++.|+.+.+||+.
T Consensus 268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 788999999999999 6688999999999999999986 567889999999999999996 4688999999999999986
Q ss_pred CC--------------ceeeEeecCcCCEEEEEEEeCCCE-EEEeecCCeEEEEEcC
Q 002782 567 DG--------------SCLKTFEGHTSSVLRASFLTRGAQ-IVSCGADGLVKLWTVR 608 (882)
Q Consensus 567 ~~--------------~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~i~iwd~~ 608 (882)
.- +++..--||...|..+.|+|+..+ ++|++.|+.+.||...
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 42 234555689999999999998775 6788899999999864
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-24 Score=214.41 Aligned_cols=253 Identities=20% Similarity=0.338 Sum_probs=212.6
Q ss_pred CCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCC
Q 002782 375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (882)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~ 454 (882)
...+.+|.+..........--.+++.|+. .+|.|.+ ++.|+..|.+++|.+.+|..+..+.+|-..|+++.|+.|+.
T Consensus 60 rp~l~vw~i~k~~~~~q~~v~Pg~v~al~--s~n~G~~-l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs 136 (476)
T KOG0646|consen 60 RPLLHVWEILKKDQVVQYIVLPGPVHALA--SSNLGYF-LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS 136 (476)
T ss_pred CccccccccCchhhhhhhcccccceeeee--cCCCceE-EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc
Confidence 34666777665544433333456788887 7788876 88888999999999999999999999999999999999987
Q ss_pred cEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC--CcEEEEEcCCCcEEEEeCCCceeEEEE
Q 002782 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVSVVTF 532 (882)
Q Consensus 455 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~la~~s~dg~i~iwd~~~~~~~~~~ 532 (882)
++++|+.||.|.+|.+...-... ......+...+..|.-+|+.+...+. ..+++++|.|.++++||+..+..+.++
T Consensus 137 -~iiTgskDg~V~vW~l~~lv~a~-~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 137 -HIITGSKDGAVLVWLLTDLVSAD-NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred -EEEecCCCccEEEEEEEeecccc-cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 89999999999999987542211 11245577888899999999998875 368999999999999999999988887
Q ss_pred ecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCC----------------CceeeEeecCcC--CEEEEEEEeCCCEEE
Q 002782 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD----------------GSCLKTFEGHTS--SVLRASFLTRGAQIV 594 (882)
Q Consensus 533 ~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~----------------~~~~~~~~~h~~--~v~~~~~s~~g~~l~ 594 (882)
. ....+.+++.+|.++.++.|+.+|.|.+.++.. +..+..+.||.+ .|+|++.+-||..|+
T Consensus 215 ~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 215 T-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred e-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 7 567899999999999999999999999887643 234667889998 999999999999999
Q ss_pred EeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCC
Q 002782 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE 633 (882)
Q Consensus 595 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~ 633 (882)
+|+.||.|.|||+.+.+|++++....++|+.+.+.|-.+
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 999999999999999999999987789999999866443
No 125
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=195.87 Aligned_cols=290 Identities=17% Similarity=0.271 Sum_probs=215.5
Q ss_pred eeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceee--eeee--CCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (882)
Q Consensus 347 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 422 (882)
..+.||.+.|.+++|++ +++.|++++.|+.|++|++...... +.++ -.-+..+.+. |.|+.+.++++.....+
T Consensus 80 ~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~--FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVV--FAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEE--ECCCcceEEEEEccCCE
Confidence 45789999999999998 8999999999999999999764321 1111 1122344445 88999887777777788
Q ss_pred EEEEeCCCceE------------EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhh
Q 002782 423 VRLWDSESRCC------------VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (882)
Q Consensus 423 i~iwd~~~~~~------------~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 490 (882)
+++|-+...+. ...-..|.-.+..+-....+. ++++++.|..|.+|++... .....
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lkGq-----------~L~~i 224 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLKGQ-----------LLQSI 224 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecCCc-----------eeeee
Confidence 99997543211 011123555666666555544 8999999999999999743 22222
Q ss_pred hhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC---C-----ceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEE
Q 002782 491 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP---D-----LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKI 562 (882)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~---~-----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~i 562 (882)
......-...++||+|+++|+++-.-.|++|.+- . -..+..++||...|..++|||+...+++.|.||++++
T Consensus 225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri 304 (420)
T KOG2096|consen 225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI 304 (420)
T ss_pred ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE
Confidence 3333445678999999999999999999999862 2 2446678999999999999999999999999999999
Q ss_pred EecCC-------CceeeEee----cCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec-cCCCceEEEEEcC
Q 002782 563 WSISD-------GSCLKTFE----GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGK 630 (882)
Q Consensus 563 wd~~~-------~~~~~~~~----~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~ 630 (882)
||++- .+.++++. .-.+....+.++|.|..|+.+.. ..++++..++|+....+. .|...|.+++|++
T Consensus 305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSS 383 (420)
T ss_pred eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecC
Confidence 99752 23333332 22334458999999998876553 579999999998777764 6899999999999
Q ss_pred CCCEEEEEeCCCCEEEEECCCHH
Q 002782 631 KTEMFATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 631 ~~~~l~s~~~dg~i~iw~~~~~~ 653 (882)
+|++++|+| |..+++..-..+-
T Consensus 384 ~g~~~atcG-dr~vrv~~ntpg~ 405 (420)
T KOG2096|consen 384 DGKYIATCG-DRYVRVIRNTPGW 405 (420)
T ss_pred CCcEEeeec-ceeeeeecCCCch
Confidence 999999988 5667888755554
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2e-23 Score=195.14 Aligned_cols=267 Identities=22% Similarity=0.283 Sum_probs=214.0
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce
Q 002782 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (882)
Q Consensus 353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 432 (882)
.+.|.++.|. +..+.|++++.||.+++|+....... ..-.|..++.+.+ |.+ ... +++|+-||.|+.+|+.++.
T Consensus 13 ~d~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~-~~~~~~~plL~c~--F~d-~~~-~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 13 EDGISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLK-LKFKHGAPLLDCA--FAD-EST-IVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred hhceeeEEEc-CcCCcEEEEeccCcEEEEeccchhhh-hheecCCceeeee--ccC-Cce-EEEeccCceEEEEEecCCc
Confidence 4678999999 57777888889999999999887443 3345788888886 555 344 8999999999999999886
Q ss_pred EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE
Q 002782 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (882)
Q Consensus 433 ~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 512 (882)
... +..|..+|.++..++... .+++|+.|++|++||..... ........+.|.++.. .|..|++|
T Consensus 87 ~~~-igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~-----------~~~~~d~~kkVy~~~v--~g~~LvVg 151 (323)
T KOG1036|consen 87 EDQ-IGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKV-----------VVGTFDQGKKVYCMDV--SGNRLVVG 151 (323)
T ss_pred cee-eccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccc-----------cccccccCceEEEEec--cCCEEEEe
Confidence 543 456999999999997644 79999999999999987421 1111223346777765 46789999
Q ss_pred cCCCcEEEEeCCCceeEEEEe--cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC----ceeeEeecCcC-------
Q 002782 513 SQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG----SCLKTFEGHTS------- 579 (882)
Q Consensus 513 s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~------- 579 (882)
+.|..+.+||+++.......+ .-+-.+.|+++-|++.=.++++-||.|.+=.++.. +.-..|+.|..
T Consensus 152 ~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~ 231 (323)
T KOG1036|consen 152 TSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI 231 (323)
T ss_pred ecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceE
Confidence 999999999999876544322 23456899999998888999999999988777665 33345666643
Q ss_pred --CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeC
Q 002782 580 --SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS 640 (882)
Q Consensus 580 --~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 640 (882)
+|++++|+|-...|+|||.||.|.+||+.+.+.+..+......|.+++|+.||..||+++.
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 6899999999899999999999999999999999999888888999999999999998874
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.9e-23 Score=195.33 Aligned_cols=305 Identities=20% Similarity=0.264 Sum_probs=210.9
Q ss_pred EEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhcccc
Q 002782 182 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR 261 (882)
Q Consensus 182 ~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (882)
..+++|.+.|++++|+.||+.|++++.|++|++|++++.......-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R-------------------------------- 127 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIR-------------------------------- 127 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhh--------------------------------
Confidence 467899999999999999999999999999999999874321100000
Q ss_pred ccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEE-EEeCCeEEEEEeccccccc
Q 002782 262 SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC-VTADQQLLLYTTVEVPEKK 340 (882)
Q Consensus 262 ~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~~~~~~~~~~~~ 340 (882)
..-.-...+...|.|+...+++ +.....+++|.+.......
T Consensus 128 --------------------------------------~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~ 169 (420)
T KOG2096|consen 128 --------------------------------------QNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGS 169 (420)
T ss_pred --------------------------------------ccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCC
Confidence 0000012355566666665533 3345667777766544322
Q ss_pred ceeeeee-----eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEE
Q 002782 341 MELILSK-----RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 415 (882)
Q Consensus 341 ~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 415 (882)
....... ....|.-.+.++-. ..+..++++++.+..|.+|++. |+.+..+......-+..+ .+|+|+. ++
T Consensus 170 ~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa--vSP~GRF-ia 244 (420)
T KOG2096|consen 170 GSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA--VSPDGRF-IA 244 (420)
T ss_pred CCcccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee--eCCCCcE-EE
Confidence 2211111 11223444455443 3478899999999999999998 776666655444444444 7899987 88
Q ss_pred EeecCCeEEEEeCC---Cc-----eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccch
Q 002782 416 TGSKDNSVRLWDSE---SR-----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 487 (882)
Q Consensus 416 ~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 487 (882)
+++-.--|.+|..- .| ..+..+.+|...|...+|+++.. .+++.+.||++++||.+-.-.....+..++.-
T Consensus 245 ~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g 323 (420)
T KOG2096|consen 245 VSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEG 323 (420)
T ss_pred EecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEecCCCchHhhcC
Confidence 88777889999753 22 23446789999999999999976 79999999999999987543222222222221
Q ss_pred -hhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec-ccCceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 002782 488 -AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (882)
Q Consensus 488 -~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd 564 (882)
..+.+.+.....++.+|+|+.||.+. ...+++|..++++....++. |...|.+++|+++|+++++++ |..++++.
T Consensus 324 ~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 324 SAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 22233344555899999999999875 46799999999887776654 899999999999999999986 47888876
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=2.9e-22 Score=210.90 Aligned_cols=290 Identities=19% Similarity=0.242 Sum_probs=212.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEeecCCCcEEEE
Q 002782 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL-ATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSI 150 (882)
Q Consensus 72 ~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~l-asg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l 150 (882)
++.+++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..+++.+..+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 35678999999999999999999999886644 6789999999976 5667889999999999988877765544 5678
Q ss_pred EEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCC-eEEEEecCCceeeeeecCc
Q 002782 151 LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTY 229 (882)
Q Consensus 151 ~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~ 229 (882)
+|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|+|+|.+++++..++ .+.+||..+.+.....
T Consensus 79 ~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~--- 153 (300)
T TIGR03866 79 ALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV--- 153 (300)
T ss_pred EECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---
Confidence 99998763 4455567899999999998888777533 3468899999999999887764 3455565432211000
Q ss_pred ceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeE
Q 002782 230 EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTA 309 (882)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (882)
T Consensus 154 -------------------------------------------------------------------------------- 153 (300)
T TIGR03866 154 -------------------------------------------------------------------------------- 153 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceee
Q 002782 310 ATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS 389 (882)
Q Consensus 310 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 389 (882)
T Consensus 154 -------------------------------------------------------------------------------- 153 (300)
T TIGR03866 154 -------------------------------------------------------------------------------- 153 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeeccc-----c--cEEEEEEccCCCcEEEEeeC
Q 002782 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM-----G--AVGAVAFSKKLQNFLVSGSS 462 (882)
Q Consensus 390 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~--~v~~v~~s~~~~~~l~s~~~ 462 (882)
.. ...+.++. ++++++.+++++..++.|.+||+.+++.+..+..+. . ....++|+|+++..+++.+.
T Consensus 154 ---~~-~~~~~~~~--~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 154 ---LV-DQRPRFAE--FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred ---Ec-CCCccEEE--ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence 00 00011233 678888755666679999999999988766554321 1 23468899998855566666
Q ss_pred CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE-cCCCcEEEEeCCCceeEEEEecccCceEE
Q 002782 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLVSVVTFRGHKRGIWS 541 (882)
Q Consensus 463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-s~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 541 (882)
++.+.+||..+.. .... ..+...+.+++|+|+|++|+++ ..++.|.+||+.+++.+..+... ...+.
T Consensus 228 ~~~i~v~d~~~~~----------~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~ 295 (300)
T TIGR03866 228 ANRVAVVDAKTYE----------VLDY-LLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWG 295 (300)
T ss_pred CCeEEEEECCCCc----------EEEE-EEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccce
Confidence 7889999986542 1111 1234578899999999999876 46899999999999999998854 55688
Q ss_pred EEEcC
Q 002782 542 VEFSP 546 (882)
Q Consensus 542 l~~s~ 546 (882)
++|+|
T Consensus 296 ~~~~~ 300 (300)
T TIGR03866 296 VVVRP 300 (300)
T ss_pred eEeCC
Confidence 88875
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.4e-25 Score=229.98 Aligned_cols=255 Identities=25% Similarity=0.440 Sum_probs=225.0
Q ss_pred EEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEE
Q 002782 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (882)
Q Consensus 369 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~ 448 (882)
++.......+++|+.. .+..|...+.|+. .-..++. +++|+.|..+.+|.+.....+..+.+|.++|.++.
T Consensus 7 ~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk--~~~s~r~-~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTR------EFVAHSAAVGCLK--IRKSSRS-LVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred cceeeeeeccccccch------hhhhhhhhhceee--eecccee-eccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 3334444566677754 3345777777776 3344454 99999999999999988888888999999999999
Q ss_pred EccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCcee
Q 002782 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (882)
Q Consensus 449 ~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~ 528 (882)
|++... ++++|+.+|+|++||+.... ...++.+|...+.++.|+|-+.+.|.|+.|..+++||.+...+
T Consensus 78 f~~~E~-LlaagsasgtiK~wDleeAk----------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc 146 (825)
T KOG0267|consen 78 FDTSER-LLAAGSASGTIKVWDLEEAK----------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC 146 (825)
T ss_pred cCcchh-hhcccccCCceeeeehhhhh----------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc
Confidence 999855 89999999999999998542 5668889999999999999999999999999999999998889
Q ss_pred EEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (882)
Q Consensus 529 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 608 (882)
...+.+|...|..+.|+|+|++++.++.|.+++|||+..|+.+..|.+|.+.+..+.|+|..-.+++|+.|++|++||++
T Consensus 147 ~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 147 SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCC
Q 002782 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL 643 (882)
Q Consensus 609 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 643 (882)
+.+.+........+|.+++|+|++..+.+|..+..
T Consensus 227 tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 227 TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred eeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 99999999888899999999999999888876653
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=4.2e-23 Score=190.90 Aligned_cols=254 Identities=19% Similarity=0.280 Sum_probs=198.9
Q ss_pred ccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC
Q 002782 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (882)
Q Consensus 351 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 430 (882)
+|.-.|.++-|.|-+...+.+++-|..+++||.++.+....+.- .+.|.+-++........++++|..+-.|++.|+.+
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence 46667788888888889999999999999999998887665542 34454444223333445699999999999999999
Q ss_pred ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCC-----CCCCcccccchhhhhhcCCCeeEEEEcCC
Q 002782 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD-----DAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (882)
Q Consensus 431 ~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (882)
|..-..+.+|.+.|.++.|+|....+|++|+.||.|++||++.... +.......+......+|.+.++.++|+.+
T Consensus 178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd 257 (397)
T KOG4283|consen 178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD 257 (397)
T ss_pred CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence 9999999999999999999999998999999999999999986521 11111122233356789999999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCceeEEEEec---ccC----ceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc
Q 002782 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKR----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578 (882)
Q Consensus 506 ~~~la~~s~dg~i~iwd~~~~~~~~~~~~---h~~----~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 578 (882)
+.++++.+.|..+++|+..+|.....-.+ |+. .+. +. +.+...++---.++.+.++++-+|..++.+.+|-
T Consensus 258 ~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~ 335 (397)
T KOG4283|consen 258 ARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL 335 (397)
T ss_pred chhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc
Confidence 99999999999999999988754322111 111 121 22 3344445545566899999999999999999999
Q ss_pred CCEEEEEEEeCCCEEEEeecCCeEEEEEc
Q 002782 579 SSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (882)
Q Consensus 579 ~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 607 (882)
..|.+..+-|+-+.+.+++.|+.|..|-.
T Consensus 336 k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 336 KRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceeeEEeecCchhhhhccccCCccccccc
Confidence 99999999999999999999999999976
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=4.9e-24 Score=210.72 Aligned_cols=279 Identities=18% Similarity=0.282 Sum_probs=230.5
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc---eeeeeeeC--CCcceEEeeeeeecCCCEEEEEeecCCeEEEEe
Q 002782 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (882)
Q Consensus 353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 427 (882)
.+++.+..-++...+++.+|+. |.|+|||+... ..+..+.. ....+.++. .+|+|+. |++|+.-.++.|||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSck--L~pdgrt-LivGGeastlsiWD 493 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCK--LLPDGRT-LIVGGEASTLSIWD 493 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeE--ecCCCce-EEeccccceeeeee
Confidence 3555666556657778888877 99999998643 22333332 344566666 8899998 88888899999999
Q ss_pred CCCceE--EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC
Q 002782 428 SESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (882)
Q Consensus 428 ~~~~~~--~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (882)
+..... ...+....-...+++.+||.+ +.+++..||.|.|||+.... ....+.+|...+.||.+++|
T Consensus 494 LAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~----------~VrqfqGhtDGascIdis~d 562 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT----------LVRQFQGHTDGASCIDISKD 562 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce----------eeecccCCCCCceeEEecCC
Confidence 986543 333444445677889999976 88999999999999998543 66778999999999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEE
Q 002782 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS 585 (882)
Q Consensus 506 ~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 585 (882)
|..|.+|+.|.+|+-||++++..+.... ..+.|.++..+|.+.+|+.|-.++.+.|-... +.....+.-|...|.++.
T Consensus 563 GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlK 640 (705)
T KOG0639|consen 563 GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLK 640 (705)
T ss_pred CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEE
Confidence 9999999999999999999987766544 56789999999999999999999999998864 445556667999999999
Q ss_pred EEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782 586 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (882)
Q Consensus 586 ~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~ 649 (882)
|.+.|+++++.+.|..+..|...-|..+.... ..+.|.++.+|.|+++|+||+.|....||.+
T Consensus 641 Fa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 641 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999999999999999999888876 5788999999999999999999999888875
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=1.6e-23 Score=213.59 Aligned_cols=291 Identities=22% Similarity=0.295 Sum_probs=226.1
Q ss_pred CCCCcEEEEEEcCCcEEEEeCCCceee------eeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEee
Q 002782 363 GEEEQYLAVATNIEQVQVYDLSSMSCS------YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 436 (882)
Q Consensus 363 ~~~~~~l~~~~~~~~i~i~d~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 436 (882)
+....+|+++..+|.|.++|....... .....|.+.|..+. +.| |+.+|++++.|.++++||+.+..++..
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~--wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~ 137 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLK--WAP-GESLLVSASGDSTIRPWDVKTSRLVGG 137 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeec--cCC-CceeEEEccCCceeeeeeeccceeecc
Confidence 346778999999999999998754433 55678999999998 777 666799999999999999999998877
Q ss_pred --eecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCC---------------Ccc--cccchhhhhhcCCCe
Q 002782 437 --GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---------------QPM--NLKAKAVVAAHGKDI 497 (882)
Q Consensus 437 --~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---------------~~~--~~~~~~~~~~~~~~i 497 (882)
+.+|.+.|.+++|.|..+..|++|+.||.|.|||+........ .+. ..+......++...|
T Consensus 138 ~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti 217 (720)
T KOG0321|consen 138 RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI 217 (720)
T ss_pred eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence 8899999999999999999999999999999999875431100 000 111222334566666
Q ss_pred eE---EEEcCCCcEEEEEcC-CCcEEEEeCCCceeEEE--------Eecc---cCceEEEEEcCCCCEEEEeeCCCcEEE
Q 002782 498 NS---LAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVT--------FRGH---KRGIWSVEFSPVDQVVITASGDKTIKI 562 (882)
Q Consensus 498 ~~---~~~s~~~~~la~~s~-dg~i~iwd~~~~~~~~~--------~~~h---~~~v~~l~~s~~~~~l~s~~~d~~i~i 562 (882)
.+ +.+..|...||+++. |+.|+|||++....... +..| ..++.++.....|.+|++.+.|++|+.
T Consensus 218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ 297 (720)
T KOG0321|consen 218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF 297 (720)
T ss_pred eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence 66 667778889999887 99999999986543222 2223 346788888888999999999999999
Q ss_pred EecCCC--ceeeEeecCcCCEEE--EEEEeCCCEEEEeecCCeEEEEEcCCCe-eEEEeccCCCceEEEEEcCCC-CEEE
Q 002782 563 WSISDG--SCLKTFEGHTSSVLR--ASFLTRGAQIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKKT-EMFA 636 (882)
Q Consensus 563 wd~~~~--~~~~~~~~h~~~v~~--~~~s~~g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s~~~-~~l~ 636 (882)
|++.+- ..+..+.++...-.. -..+||+.+|++|+.|+..++|.+.+.+ ....+.+|.-.|++++|.|.. .-++
T Consensus 298 ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~ 377 (720)
T KOG0321|consen 298 YNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVA 377 (720)
T ss_pred EeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCce
Confidence 999764 345556555443222 2568999999999999999999998865 456677999999999998743 3578
Q ss_pred EEeCCCCEEEEECCCHHHHH
Q 002782 637 TGGSDALVNLWHDSTAAERE 656 (882)
Q Consensus 637 s~~~dg~i~iw~~~~~~~~~ 656 (882)
|++.|..+++|++..+.++.
T Consensus 378 TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 378 TCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred eeccCcceEEEeccCchhhc
Confidence 88999999999997766544
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=3.4e-22 Score=210.33 Aligned_cols=270 Identities=13% Similarity=0.156 Sum_probs=208.2
Q ss_pred cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEE
Q 002782 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 446 (882)
Q Consensus 367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 446 (882)
..+++++.++.+.+||+.+++....+..+.. +.++. ++|+++.++++++.++.|++||..+++....+..+.. +..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~--~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGIT--LSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PEL 77 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceE--ECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccE
Confidence 4678888899999999999988888876654 45566 8899987567888899999999999888776655443 567
Q ss_pred EEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCC-cEEEEeCCC
Q 002782 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPD 525 (882)
Q Consensus 447 v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg-~i~iwd~~~ 525 (882)
++++|+++.++++++.++.+++||+.... ..... .+...+.+++|+|+|+++++++.++ .+.+||..+
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~----------~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRK----------VLAEI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCe----------EEeEe-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence 89999988555666778999999987532 11111 1233467899999999999988775 467789988
Q ss_pred ceeEEEEecccCceEEEEEcCCCCEEEEe-eCCCcEEEEecCCCceeeEeecCc-----C--CEEEEEEEeCCCEEEE-e
Q 002782 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHT-----S--SVLRASFLTRGAQIVS-C 596 (882)
Q Consensus 526 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~-----~--~v~~~~~s~~g~~l~s-~ 596 (882)
++....+.. ...+.+++|+|++++|+++ ..++.|++||+.+++++..+..+. . ....++|+|+|++++. .
T Consensus 147 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 147 YEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred CeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 877665543 3346789999999988654 468999999999998877665322 1 2346889999998654 4
Q ss_pred ecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEE-eCCCCEEEEECCCHH
Q 002782 597 GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG-GSDALVNLWHDSTAA 653 (882)
Q Consensus 597 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iw~~~~~~ 653 (882)
+.++.+.+||+.+++.+..+. +...+++++|+|+|++|+++ +.+|.|.+||..+++
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 556789999999998876654 45679999999999999886 568999999998754
No 134
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.2e-23 Score=208.00 Aligned_cols=280 Identities=23% Similarity=0.377 Sum_probs=222.4
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eeEEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782 58 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---KCLRSWKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (882)
Q Consensus 58 ~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~---~~~~~~~~--h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~ 132 (882)
.|.+-|.++++|...+++.+|+. |.|+|||+... .++..+.. ...-|.++...|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 38889999999999999999987 78999999643 34444432 35678999999999999999999999999997
Q ss_pred CCeEE--EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCC
Q 002782 133 GGFCT--HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK 210 (882)
Q Consensus 133 ~~~~~--~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg 210 (882)
..... ..+........+++.+||.+. .+++..||.|.|||+.+...++.|++|...+.|+.+++||..|.+||-|+
T Consensus 496 apTprikaeltssapaCyALa~spDakv--cFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKV--CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccce--eeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 66543 223333345677888998654 99999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeec
Q 002782 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290 (882)
Q Consensus 211 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~ 290 (882)
+|+.||++++..+.....
T Consensus 574 tvRcWDlregrqlqqhdF-------------------------------------------------------------- 591 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHDF-------------------------------------------------------------- 591 (705)
T ss_pred ceeehhhhhhhhhhhhhh--------------------------------------------------------------
Confidence 999999987765443222
Q ss_pred CCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEE
Q 002782 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA 370 (882)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 370 (882)
...|.++.++| .+.+++
T Consensus 592 --------------------------------------------------------------~SQIfSLg~cP-~~dWla 608 (705)
T KOG0639|consen 592 --------------------------------------------------------------SSQIFSLGYCP-TGDWLA 608 (705)
T ss_pred --------------------------------------------------------------hhhheecccCC-Ccccee
Confidence 12333444444 555666
Q ss_pred EEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEc
Q 002782 371 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 450 (882)
Q Consensus 371 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s 450 (882)
+|-.++.+.+..... ...+.+..|...|.++. |.+.|++ +++.++|..+..|...-|..+.... ..+.|.++.++
T Consensus 609 vGMens~vevlh~sk-p~kyqlhlheScVLSlK--Fa~cGkw-fvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS 683 (705)
T KOG0639|consen 609 VGMENSNVEVLHTSK-PEKYQLHLHESCVLSLK--FAYCGKW-FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDIS 683 (705)
T ss_pred eecccCcEEEEecCC-ccceeecccccEEEEEE--ecccCce-eeecCchhhhhhccCccccceeecc-ccCcceeeeec
Confidence 666666666665433 33446777889999998 8899998 8999999999999998887765543 45789999999
Q ss_pred cCCCcEEEEeeCCCeEEEEec
Q 002782 451 KKLQNFLVSGSSDHTIKVWSF 471 (882)
Q Consensus 451 ~~~~~~l~s~~~dg~i~~wd~ 471 (882)
.+.+ ++++|+.|+.-.+|.+
T Consensus 684 ~ddk-yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 684 FDDK-YIVTGSGDKKATVYEV 703 (705)
T ss_pred cCce-EEEecCCCcceEEEEE
Confidence 9876 8999999998888865
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.9e-24 Score=190.38 Aligned_cols=144 Identities=23% Similarity=0.296 Sum_probs=125.6
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eeEEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 002782 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---KCLRSWKGHDGPAIGMACHP--SGGLLATAGADRKVLVWD 130 (882)
Q Consensus 56 l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~---~~~~~~~~h~~~V~~l~fs~--~~~~lasg~~dg~v~vwd 130 (882)
-..|.+.|..+.+.-.|++||+++.|++|+|+.+.+. .++.++.||.+||..++|-. -|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3568999999999999999999999999999999754 57889999999999999976 899999999999999999
Q ss_pred CCCCeE--EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC---eEEEEecCcccceEEEEEccC
Q 002782 131 VDGGFC--THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAITSD 199 (882)
Q Consensus 131 ~~~~~~--~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~---~~~~~l~~h~~~v~~l~~s~~ 199 (882)
-++|+- .+....|.+.|++++|.|.+-..+|++++.||.|.|.+..+. ........|.-.|++++|.|.
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 988853 345568999999999999988899999999999999988654 123345789999999999986
No 136
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.9e-22 Score=188.78 Aligned_cols=270 Identities=21% Similarity=0.317 Sum_probs=222.4
Q ss_pred cCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEe
Q 002782 303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD 382 (882)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d 382 (882)
+...+..+.++|..+.|++.+-||.+.+|+.... ..+....|..++.+++|.+ ...+++|+-||.|+.+|
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--------~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--------SLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYD 81 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--------hhhhheecCCceeeeeccC--CceEEEeccCceEEEEE
Confidence 3578899999999999999999999999998754 2234445788999999984 67899999999999999
Q ss_pred CCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeC
Q 002782 383 LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS 462 (882)
Q Consensus 383 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~ 462 (882)
+.++... .+..|..++.|+. ..+.... +++|+.|++|++||.........+.. ...|.++....+ .|+.|+.
T Consensus 82 ln~~~~~-~igth~~~i~ci~--~~~~~~~-vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~---~LvVg~~ 153 (323)
T KOG1036|consen 82 LNTGNED-QIGTHDEGIRCIE--YSYEVGC-VISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGN---RLVVGTS 153 (323)
T ss_pred ecCCcce-eeccCCCceEEEE--eeccCCe-EEEcccCccEEEEecccccccccccc-CceEEEEeccCC---EEEEeec
Confidence 9988765 5678999999998 6666665 99999999999999987555554443 347888877654 6999999
Q ss_pred CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc----eeEEEEeccc--
Q 002782 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHK-- 536 (882)
Q Consensus 463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~----~~~~~~~~h~-- 536 (882)
|..+.+||++...... ........-.+.|+++-|++.=.++++-||.|.+=.++.. .....|+.|.
T Consensus 154 ~r~v~iyDLRn~~~~~--------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~ 225 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPF--------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS 225 (323)
T ss_pred CceEEEEEcccccchh--------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc
Confidence 9999999998764321 1112223456899999999999999999999998777665 4455677664
Q ss_pred -------CceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeec
Q 002782 537 -------RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598 (882)
Q Consensus 537 -------~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 598 (882)
-+|.+|+|+|-.+.++||+.||.|.+||+.+.+.+..|.....+|..++|+.+|..||.++.
T Consensus 226 ~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 226 EKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 37999999999999999999999999999999999999888889999999999999999875
No 137
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.2e-22 Score=205.62 Aligned_cols=313 Identities=21% Similarity=0.296 Sum_probs=231.1
Q ss_pred eeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEEC
Q 002782 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG--LLATAGADRKVLVWDV 131 (882)
Q Consensus 54 ~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~--~lasg~~dg~v~vwd~ 131 (882)
..+.||++.|.|+...|.|.+||+|+.||+|+||.+.+|.+++++. -.+.|.|++|+|.+. .||++-... +.|-+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeCc
Confidence 4567999999999999999999999999999999999999999987 457999999999776 455544433 666665
Q ss_pred CCCeEEEEeecCCCcEEEEEEecCCCccEEEEE----eCCCcEEEEECCCCe----EEEEecCcccceEEEEEccCCCEE
Q 002782 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG----SDDATVRVWDLLAKK----CVATLDKHFSRVTSMAITSDGSTL 203 (882)
Q Consensus 132 ~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sg----s~dg~I~vwd~~~~~----~~~~l~~h~~~v~~l~~s~~~~~l 203 (882)
.-|..+..-. - ..+|+++ ..++.+..|.-.+.. -+...-.|...|..+.|+..|.||
T Consensus 472 ~~G~~~e~~~-----t----------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 472 IFGDRLEVGP-----T----------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred cccchhhhcc-----h----------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence 4442221100 0 0012222 235567888654221 244556688999999999999999
Q ss_pred EEEeCCC---eEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEE
Q 002782 204 ISAGRDK---VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280 (882)
Q Consensus 204 ~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~ 280 (882)
++...++ .|.|.++..
T Consensus 537 atV~~~~~~~~VliHQLSK------------------------------------------------------------- 555 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSK------------------------------------------------------------- 555 (733)
T ss_pred EEeccCCCcceEEEEeccc-------------------------------------------------------------
Confidence 9887653 333333321
Q ss_pred CCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEE
Q 002782 281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 360 (882)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 360 (882)
T Consensus 556 -------------------------------------------------------------------------------- 555 (733)
T KOG0650|consen 556 -------------------------------------------------------------------------------- 555 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecc
Q 002782 361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH 440 (882)
Q Consensus 361 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 440 (882)
......+....+.+.++. |.|.... +++++ ...|+|||+.....+..+...
T Consensus 556 -------------------------~~sQ~PF~kskG~vq~v~--FHPs~p~-lfVaT-q~~vRiYdL~kqelvKkL~tg 606 (733)
T KOG0650|consen 556 -------------------------RKSQSPFRKSKGLVQRVK--FHPSKPY-LFVAT-QRSVRIYDLSKQELVKKLLTG 606 (733)
T ss_pred -------------------------ccccCchhhcCCceeEEE--ecCCCce-EEEEe-ccceEEEehhHHHHHHHHhcC
Confidence 111112222233444444 6666666 44444 457999999988877777777
Q ss_pred cccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEE
Q 002782 441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (882)
Q Consensus 441 ~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~i 520 (882)
...|..++++|.|.+ |+.|+.|+.+..+|+.-. .++...+..|...+++++|++.-.++|+|+.||++.|
T Consensus 607 ~kwiS~msihp~GDn-li~gs~d~k~~WfDldls---------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDN-LILGSYDKKMCWFDLDLS---------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred CeeeeeeeecCCCCe-EEEecCCCeeEEEEcccC---------cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence 889999999999885 788999999999999753 3366778889999999999999999999999999999
Q ss_pred EeC------CC---ceeEEEEecccCc----eEEEEEcCCCCEEEEeeCCCcEEEE
Q 002782 521 WRL------PD---LVSVVTFRGHKRG----IWSVEFSPVDQVVITASGDKTIKIW 563 (882)
Q Consensus 521 wd~------~~---~~~~~~~~~h~~~----v~~l~~s~~~~~l~s~~~d~~i~iw 563 (882)
|.- .. --++..+.+|... |..+.|+|...+|++++.||+|++|
T Consensus 677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 852 11 2456678888765 9999999999999999999999998
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.2e-22 Score=214.37 Aligned_cols=276 Identities=16% Similarity=0.205 Sum_probs=227.7
Q ss_pred ccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc-eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCC
Q 002782 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 429 (882)
Q Consensus 351 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 429 (882)
.|......++|.+ ++.++.+++.+|.|++|+..+. .....+..+...+.+++ ..... |++|+.+++|..|.+.
T Consensus 11 aht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia----~~s~~-f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 11 AHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIA----CYSNH-FLTGSEQNTVLRYKFP 84 (933)
T ss_pred hccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEe----ecccc-eEEeeccceEEEeeCC
Confidence 4566677888877 5569999999999999998766 44545555788888886 33334 9999999999999999
Q ss_pred CceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEE
Q 002782 430 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 509 (882)
Q Consensus 430 ~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 509 (882)
++..-..+...+-++++++|+.+|. +++.||.|-.|++-+..... ....+.+|..+|.++.|+|++.+|
T Consensus 85 s~~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s----------~~~~lrgh~apVl~l~~~p~~~fL 153 (933)
T KOG1274|consen 85 SGEEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSS----------QEKVLRGHDAPVLQLSYDPKGNFL 153 (933)
T ss_pred CCCccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccc----------hheeecccCCceeeeeEcCCCCEE
Confidence 8877767777788999999999987 79999999999999987653 566778999999999999999999
Q ss_pred EEEcCCCcEEEEeCCCceeEEEEecc--------cCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeec--CcC
Q 002782 510 CTGSQDRTACVWRLPDLVSVVTFRGH--------KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG--HTS 579 (882)
Q Consensus 510 a~~s~dg~i~iwd~~~~~~~~~~~~h--------~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~ 579 (882)
|+.+.||.|++||+.++....++.+- ...+..++|+|++..++..+.|+.|++|+..++.....+.. +..
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss 233 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS 233 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc
Confidence 99999999999999998777666541 45578899999999999999999999999999998887764 344
Q ss_pred CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEE
Q 002782 580 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647 (882)
Q Consensus 580 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 647 (882)
.+..++|+|+|+|||+++.||.|.|||+++-+. ......|.+++|.|+++.+-.-...|..-+|
T Consensus 234 ~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 234 KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 489999999999999999999999999988222 2345789999999998866554444544444
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=3.6e-22 Score=184.74 Aligned_cols=292 Identities=22% Similarity=0.343 Sum_probs=219.7
Q ss_pred ecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe------------EE---EEecCcccceEEEEEcc-CCCEEE
Q 002782 141 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK------------CV---ATLDKHFSRVTSMAITS-DGSTLI 204 (882)
Q Consensus 141 ~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~------------~~---~~l~~h~~~v~~l~~s~-~~~~l~ 204 (882)
+.|.+.|.++...+. ...++++|+.||.|.+||++... |+ ..-.+|.-.|.++.|-| |...+.
T Consensus 40 r~HgGsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred ccCCCccceeeeccc-cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 468899999999886 45689999999999999997543 21 11245777999999998 445677
Q ss_pred EEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCc
Q 002782 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (882)
Q Consensus 205 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~ 284 (882)
+++.|.++++||..+.+....+..++.+..-
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYsh------------------------------------------------- 149 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSH------------------------------------------------- 149 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehh-------------------------------------------------
Confidence 8889999999999887654443332222111
Q ss_pred eeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeC-
Q 002782 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG- 363 (882)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 363 (882)
+++|
T Consensus 150 ---------------------------------------------------------------------------amSp~ 154 (397)
T KOG4283|consen 150 ---------------------------------------------------------------------------AMSPM 154 (397)
T ss_pred ---------------------------------------------------------------------------hcChh
Confidence 1111
Q ss_pred -CCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc-eEEee-----
Q 002782 364 -EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGV----- 436 (882)
Q Consensus 364 -~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~----- 436 (882)
...-++|+|+.+.+|++.|+.+|.+...+.||.+.|.++. |+|...+++++|+.||.|++||+... .+...
T Consensus 155 a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~--Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 155 AMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE--WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred hhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE--eccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 1234788899999999999999999999999999999999 88999999999999999999998753 22222
Q ss_pred ---------eecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCc
Q 002782 437 ---------GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507 (882)
Q Consensus 437 ---------~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 507 (882)
-.+|.+.+..++|+.++. ++++++.|..+++|+...+.....+..+. ......| -.+. +. +.+..
T Consensus 233 ~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r~r~wn~~~G~ntl~~~g~~--~~n~~~~-~~~~-~~-~~~s~ 306 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDRIRVWNMESGRNTLREFGPI--IHNQTTS-FAVH-IQ-SMDSD 306 (397)
T ss_pred CccCccccccccccceeeeeeecccch-hhhhccCccceEEeecccCcccccccccc--ccccccc-ceEE-Ee-ecccc
Confidence 236888999999999987 78999999999999988764321111000 0000000 0111 22 33444
Q ss_pred EEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEec
Q 002782 508 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (882)
Q Consensus 508 ~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~ 565 (882)
.++---.++.+.++.+-++..+..+.+|...|.|..+-|+-+.+.+|..|+.|..|..
T Consensus 307 vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 307 VFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 5555556789999999999999999999999999999999999999999999999986
No 140
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.6e-22 Score=186.29 Aligned_cols=253 Identities=19% Similarity=0.411 Sum_probs=199.5
Q ss_pred eCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC----ceEEeeeecccccEEEEEEc-cCCCcEEEEeeCCCeEE
Q 002782 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIK 467 (882)
Q Consensus 393 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~v~~s-~~~~~~l~s~~~dg~i~ 467 (882)
.+|.+-|.++. +...|++ +++|+.|+++.|||... -.+....+.|.+.|..+.|. |.-...+++++.|+++.
T Consensus 10 s~h~DlihdVs--~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVS--FDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeee--ecccCce-eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 47888999998 8889998 99999999999999653 34666788999999999995 44445899999999999
Q ss_pred EEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC--CCcEEEEEcCCCcEEEEeCCCceeEE------EEe------
Q 002782 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP--NDSLVCTGSQDRTACVWRLPDLVSVV------TFR------ 533 (882)
Q Consensus 468 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~la~~s~dg~i~iwd~~~~~~~~------~~~------ 533 (882)
+|.=...... ..........++......|+.+.|.| -|-.+|+++.||.++||+..+.-.+. .+.
T Consensus 87 iWEE~~~~~~-~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 87 IWEEQEKSEE-AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeecccccc-cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 9985422111 11123344555666778999999999 47899999999999999876542222 222
Q ss_pred -cccCceEEEEEcCC---CCEEEEeeCC-----CcEEEEecCCCc----eeeEeecCcCCEEEEEEEeCC----CEEEEe
Q 002782 534 -GHKRGIWSVEFSPV---DQVVITASGD-----KTIKIWSISDGS----CLKTFEGHTSSVLRASFLTRG----AQIVSC 596 (882)
Q Consensus 534 -~h~~~v~~l~~s~~---~~~l~s~~~d-----~~i~iwd~~~~~----~~~~~~~h~~~v~~~~~s~~g----~~l~s~ 596 (882)
.+..+..|+.|+|. .++||.|+.+ +.++||....+. .+.++.+|..+|+.++|.|+- ..|+++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 36677889999974 4678888776 478999866542 356788999999999999963 478999
Q ss_pred ecCCeEEEEEcCC--------------------CeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782 597 GADGLVKLWTVRT--------------------GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 597 ~~dg~i~iwd~~~--------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~ 650 (882)
+.|| |+||.++. -+.+..+..|+++||.+.|.-.|..|++.|.||++++|+..
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 99999872 13456778999999999999999999999999999999754
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.6e-23 Score=216.86 Aligned_cols=286 Identities=20% Similarity=0.261 Sum_probs=223.0
Q ss_pred EccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC---cee
Q 002782 312 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---MSC 388 (882)
Q Consensus 312 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~ 388 (882)
..++..++++ .....+.+|..........-....+..+.-.-.+.++.|..-..+++|+++..|.|.+||+.. ...
T Consensus 47 ~nr~~~qiv~-AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~ 125 (839)
T KOG0269|consen 47 VNRDINQIVV-AGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKL 125 (839)
T ss_pred ecCCcceeEE-ecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccchh
Confidence 3344444433 334456666665543221111111222222334567778777889999999999999999987 555
Q ss_pred eeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEE
Q 002782 389 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV 468 (882)
Q Consensus 389 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~ 468 (882)
...+..|...+.+++ |++....++++|+.||.|++||+.......++.+....|..+.|+|...+.++++...|.+++
T Consensus 126 l~~f~EH~Rs~~~ld--fh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lql 203 (839)
T KOG0269|consen 126 LTVFNEHERSANKLD--FHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQL 203 (839)
T ss_pred hhHhhhhccceeeee--eccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEE
Confidence 667889999999999 888888889999999999999999998888888999999999999988889999999999999
Q ss_pred EecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeE--EEEecccCceEEEEEcC
Q 002782 469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV--VTFRGHKRGIWSVEFSP 546 (882)
Q Consensus 469 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s~ 546 (882)
||++... .....+.+|.++|.|+.|+|++.+||+|+.|+.|+|||..+.+.. .++. ...+|..+.|-|
T Consensus 204 WDlRqp~---------r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP 273 (839)
T KOG0269|consen 204 WDLRQPD---------RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRP 273 (839)
T ss_pred eeccCch---------hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeecc
Confidence 9998642 366777899999999999999999999999999999999866433 3333 457899999999
Q ss_pred CCCE-EEEee--CCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEe-CCCEEEEeecCCeEEEEEcCCC
Q 002782 547 VDQV-VITAS--GDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVRTG 610 (882)
Q Consensus 547 ~~~~-l~s~~--~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~ 610 (882)
..++ |++++ .|..|+|||+... -+..+|..|...++.++|.. |...|.+++.||.|..-.++++
T Consensus 274 ~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 274 ARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred CccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 8764 55554 4788999999754 45678899999999999964 5567899999998766555543
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.7e-22 Score=184.40 Aligned_cols=292 Identities=18% Similarity=0.316 Sum_probs=212.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 002782 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG 142 (882)
Q Consensus 63 I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~ 142 (882)
-.|+.|++.|.+||+|..||.|.|||+.|...-+.+.+|..||++++||+||+.|+|++.|..|.+||+..|.+++.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCcee
Q 002782 143 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 222 (882)
Q Consensus 143 h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 222 (882)
..++|+.+.|+|-.....+++--. . ...-+.|++.-..++.-..||.+.
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~-~---------------------sp~vi~~s~~~h~~Lp~d~d~dln--------- 153 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIME-E---------------------SPVVIDFSDPKHSVLPKDDDGDLN--------- 153 (405)
T ss_pred ccCccceeeeccccCCeEEEEEec-C---------------------CcEEEEecCCceeeccCCCccccc---------
Confidence 678999999999755432322111 0 011122222111111111111000
Q ss_pred eeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCC
Q 002782 223 KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDD 302 (882)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 302 (882)
T Consensus 154 -------------------------------------------------------------------------------- 153 (405)
T KOG1273|consen 154 -------------------------------------------------------------------------------- 153 (405)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEe
Q 002782 303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD 382 (882)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d 382 (882)
.+
T Consensus 154 -------------------------------------------------------------------~s----------- 155 (405)
T KOG1273|consen 154 -------------------------------------------------------------------SS----------- 155 (405)
T ss_pred -------------------------------------------------------------------cc-----------
Confidence 00
Q ss_pred CCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeeccc-ccEEEEEEccCCCcEEEEee
Q 002782 383 LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM-GAVGAVAFSKKLQNFLVSGS 461 (882)
Q Consensus 383 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~s~~~~~~l~s~~ 461 (882)
..|. . +.+.|++ +++|...|.+.++|..+-+++..++-.. ..|..+.++..|. +++.-+
T Consensus 156 ----------as~~------~--fdr~g~y-IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNt 215 (405)
T KOG1273|consen 156 ----------ASHG------V--FDRRGKY-IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINT 215 (405)
T ss_pred ----------cccc------c--ccCCCCE-EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEec
Confidence 0000 0 4466666 7888888888888888877777766555 7788899998877 889999
Q ss_pred CCCeEEEEecCCCCCCCCCcccccchhhh--hhcCCCeeEEEEcCCCcEEEEEcC-CCcEEEEeCCCceeEEEEeccc-C
Q 002782 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFRGHK-R 537 (882)
Q Consensus 462 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~la~~s~-dg~i~iwd~~~~~~~~~~~~h~-~ 537 (882)
.|..|+.|++......... ....+...+ ......-.+++||.+|.+++.++. ...++||.-..|.+++.+.|.+ .
T Consensus 216 sDRvIR~ye~~di~~~~r~-~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE 294 (405)
T KOG1273|consen 216 SDRVIRTYEISDIDDEGRD-GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE 294 (405)
T ss_pred CCceEEEEehhhhcccCcc-CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh
Confidence 9999999998743211000 000111111 112234568999999999988774 3569999999999999999987 5
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782 538 GIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (882)
Q Consensus 538 ~v~~l~~s~~~~~l~s~~~d~~i~iwd~~ 566 (882)
....+.|.|-...+++- ..|.|++|...
T Consensus 295 ~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 295 ELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred heeecccccceeeeeec-cCCceEEEEee
Confidence 67889999988888887 66999999863
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.2e-22 Score=214.30 Aligned_cols=243 Identities=20% Similarity=0.306 Sum_probs=207.5
Q ss_pred eCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc-eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEec
Q 002782 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (882)
Q Consensus 393 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~ 471 (882)
..|....+.+. +.++|.. +++++.||.|++|+.... ..-..+..+...|.+++.... .|++|+.+++|.+|.+
T Consensus 10 yaht~G~t~i~--~d~~gef-i~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLIC--YDPDGEF-ICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEE--EcCCCCE-EEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeC
Confidence 35677766666 8899996 999999999999987765 333333347788888887654 6999999999999999
Q ss_pred CCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEE
Q 002782 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551 (882)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 551 (882)
..+.. ...+....-++++++|+.+|+++|.|+.|-.|++-++.+......+++|..+|.++.|+|.+.+|
T Consensus 84 ps~~~----------~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fL 153 (933)
T KOG1274|consen 84 PSGEE----------DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFL 153 (933)
T ss_pred CCCCc----------cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEE
Confidence 87642 22233345688999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCcEEEEecCCCceeeEeecC--------cCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec--cCCC
Q 002782 552 ITASGDKTIKIWSISDGSCLKTFEGH--------TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--KHED 621 (882)
Q Consensus 552 ~s~~~d~~i~iwd~~~~~~~~~~~~h--------~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~ 621 (882)
|+.+.||.|++||+.++.+..++.+- ...+..++|+|+|..|+..+.|+.|++|+..+++....+. .+..
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss 233 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS 233 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc
Confidence 99999999999999999888776542 3457789999999999999999999999999999887775 3455
Q ss_pred ceEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782 622 KIWALAVGKKTEMFATGGSDALVNLWHDST 651 (882)
Q Consensus 622 ~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~ 651 (882)
.+..+.|+|.|.|||+++.||.|.||+..+
T Consensus 234 ~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 234 KFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 699999999999999999999999999997
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.7e-23 Score=216.74 Aligned_cols=232 Identities=21% Similarity=0.320 Sum_probs=192.4
Q ss_pred eecCCCEEEEEeecCCeEEEEeCCC---ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcc
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 482 (882)
+..-...+|++++..|.|.+||+.. .+.+..+..|...++++.|++..+++|++|++||+|++||++...
T Consensus 95 W~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~------- 167 (839)
T KOG0269|consen 95 WGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK------- 167 (839)
T ss_pred cccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-------
Confidence 4433444699999999999999987 556667889999999999999999999999999999999998653
Q ss_pred cccchhhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCCCEEEEeeCCCcE
Q 002782 483 NLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 560 (882)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i 560 (882)
...+.......|..+.|+| .+..++++...|.+.+||++.. .+...+..|.++|.|+.|+|++.+|||||.|+.|
T Consensus 168 ---S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 168 ---SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred ---ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 4445555778899999999 5789999999999999999865 4566788899999999999999999999999999
Q ss_pred EEEecCCCce--eeEeecCcCCEEEEEEEeCCCE-EEEeec--CCeEEEEEcCCC-eeEEEeccCCCceEEEEEcC-CCC
Q 002782 561 KIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQ-IVSCGA--DGLVKLWTVRTG-ECIATYDKHEDKIWALAVGK-KTE 633 (882)
Q Consensus 561 ~iwd~~~~~~--~~~~~~h~~~v~~~~~s~~g~~-l~s~~~--dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~-~~~ 633 (882)
+|||+.+++. +.++. ...+|.++.|-|...+ |++++. |-.|+|||++.. -+..++..|.+.++.++|.. |..
T Consensus 245 kiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~ 323 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRI 323 (839)
T ss_pred EEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCce
Confidence 9999987644 33333 3468999999998665 566654 779999999754 56788889999999999965 556
Q ss_pred EEEEEeCCCCEEEEE
Q 002782 634 MFATGGSDALVNLWH 648 (882)
Q Consensus 634 ~l~s~~~dg~i~iw~ 648 (882)
.+.+++.||++..-.
T Consensus 324 ~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 324 NLWSCSKDGTVLQHL 338 (839)
T ss_pred eeEeecCccHHHHhh
Confidence 788999999875433
No 145
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.7e-20 Score=197.38 Aligned_cols=473 Identities=15% Similarity=0.184 Sum_probs=309.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCc-cEEEEEeCCCcEEEEECCCCeEEEEe
Q 002782 106 IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK-SLLFSGSDDATVRVWDLLAKKCVATL 184 (882)
Q Consensus 106 ~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~-~~l~sgs~dg~I~vwd~~~~~~~~~l 184 (882)
..-.||+|+++++... +..|.||...+|.+++.+.+|..+++.+.+.|.... .++++++.||.|++||...+..+.++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 3456999999888765 578999999999999999999999999999887554 67889999999999999999999988
Q ss_pred cCcccceEEEEEccC---CCEEE-EEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccc
Q 002782 185 DKHFSRVTSMAITSD---GSTLI-SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 260 (882)
Q Consensus 185 ~~h~~~v~~l~~s~~---~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (882)
..+. ++..+.+.|. -...+ .+..|.. +.. +....
T Consensus 99 ~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~--~~~--------~~s~~------------------------------- 136 (792)
T KOG1963|consen 99 DNNL-PVHALVYKPAQADISANVYVSVEDYS--ILT--------TFSKK------------------------------- 136 (792)
T ss_pred ecCC-ceeEEEechhHhCccceeEeecccce--eee--------ecccc-------------------------------
Confidence 6553 3444444321 11111 1111111 000 00000
Q ss_pred cccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccc
Q 002782 261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK 340 (882)
Q Consensus 261 ~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 340 (882)
..+..+-+.+.+-. .....+... ......+.. .....+..+..+..+.+|.......
T Consensus 137 -----------~~~q~~~~~~~t~~-------~~~~d~~~~--~~~~~~I~~-~~~ge~~~i~~~~~~~~~~v~~~~~-- 193 (792)
T KOG1963|consen 137 -----------LSKQSSRFVLATFD-------SAKGDFLKE--HQEPKSIVD-NNSGEFKGIVHMCKIHIYFVPKHTK-- 193 (792)
T ss_pred -----------cccceeeeEeeecc-------ccchhhhhh--hcCCccEEE-cCCceEEEEEEeeeEEEEEecccce--
Confidence 00000000000000 000000000 000111222 2333445555666677777665331
Q ss_pred ceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC----ceeeeeeeCCCcceEEeeeeeecCCCEEEEE
Q 002782 341 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVT 416 (882)
Q Consensus 341 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 416 (882)
.......-..|.-.+.+.+++| .+++++++..+|+|.+|.--. ......+.=|...|.++. |+++|.+ +.+
T Consensus 194 -~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~--fS~~G~~-LlS 268 (792)
T KOG1963|consen 194 -HTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS--FSSDGAY-LLS 268 (792)
T ss_pred -eeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeE--EecCCce-Eee
Confidence 1111122233444467777776 889999999999999997433 223446677999999999 9999998 999
Q ss_pred eecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCC-CcccccchhhhhhcCC
Q 002782 417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE-QPMNLKAKAVVAAHGK 495 (882)
Q Consensus 417 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~ 495 (882)
|+..|.+.+|.+.+++ ...+..-.++|..+.++|++. +.+....|+.|.+....+...... ...............+
T Consensus 269 GG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 269 GGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred cccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 9999999999999988 556677789999999999987 567777899999988754421110 0000000000112234
Q ss_pred CeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec-----------ccCceEEEEEcCCCCEEEEeeC--------
Q 002782 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-----------HKRGIWSVEFSPVDQVVITASG-------- 556 (882)
Q Consensus 496 ~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~-----------h~~~v~~l~~s~~~~~l~s~~~-------- 556 (882)
-.+.++++|.-+.++..+..|.|.+||+-+...+..+.. +..++++++.+-.|.+++|.-.
T Consensus 347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~ 426 (792)
T KOG1963|consen 347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFF 426 (792)
T ss_pred cceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhcc
Confidence 457788999777888888999999999988766655541 2345788888888999998632
Q ss_pred C--CcEEEEecCCCce----ee-EeecCcCCEEEEEEEeC--CCEEEEeecCCeEEEEEcCC----------CeeEEEec
Q 002782 557 D--KTIKIWSISDGSC----LK-TFEGHTSSVLRASFLTR--GAQIVSCGADGLVKLWTVRT----------GECIATYD 617 (882)
Q Consensus 557 d--~~i~iwd~~~~~~----~~-~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~i~iwd~~~----------~~~~~~~~ 617 (882)
| -.+++|-...... .. ....|...+...+|.+. ...+++++.||.++||-+.. ..|...-.
T Consensus 427 ~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s 506 (792)
T KOG1963|consen 427 DGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS 506 (792)
T ss_pred CceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec
Confidence 3 3478897654432 22 22358877777777543 23799999999999998832 23444444
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (882)
Q Consensus 618 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~ 652 (882)
.|..++.+++|+.||. +++.+.|++|.+||..+.
T Consensus 507 y~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 507 YHKTPITALCFSQDGS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred cccCcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence 5889999999999996 555667889999999985
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=3.1e-22 Score=204.35 Aligned_cols=435 Identities=17% Similarity=0.207 Sum_probs=265.2
Q ss_pred EEEcC---CCCEEEEEeCCCcEEEEECCCCee------EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 002782 66 LALSP---DDKLLFSSGHSREIRVWDLSTLKC------LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC 136 (882)
Q Consensus 66 l~~sp---d~~~las~~~dg~i~iwd~~~~~~------~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~ 136 (882)
..|++ ....||.+..+|.|.++|...... +..+..|...|..+.|-|....|++++.|.++++||+.++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 45554 235789999999999999865432 356778999999999999777899999999999999999988
Q ss_pred EEE--eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe---------------------------EEEEecCc
Q 002782 137 THY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---------------------------CVATLDKH 187 (882)
Q Consensus 137 ~~~--~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~---------------------------~~~~l~~h 187 (882)
... +.||.+.|.++||.|.. ..++++|+.||.|.|||+.-.. .+..-..|
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred ecceeecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 876 88999999999999984 5789999999999999985322 01111223
Q ss_pred ccceEE---EEEccCCCEEEEEeC-CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhcccccc
Q 002782 188 FSRVTS---MAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 263 (882)
Q Consensus 188 ~~~v~~---l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (882)
.+.|.+ +.+..|...|+++|. |+.|+|||++...........
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~---------------------------------- 259 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR---------------------------------- 259 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC----------------------------------
Confidence 344444 555567778888877 888888888765432211100
Q ss_pred ceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccccee
Q 002782 264 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL 343 (882)
Q Consensus 264 ~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 343 (882)
....-........+++.+.....+.+|++.+.|+.|++|++....
T Consensus 260 -----------------------------~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s------ 304 (720)
T KOG0321|consen 260 -----------------------------GSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS------ 304 (720)
T ss_pred -----------------------------cccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC------
Confidence 000000000112344555555555666555556666666554321
Q ss_pred eeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeE
Q 002782 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (882)
Q Consensus 344 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 423 (882)
......+.++...-.-+..+.+|++.. +++|+.|...
T Consensus 305 ------------------------------------------~sP~~~~sg~~~~sf~vks~lSpd~~~-l~SgSsd~~a 341 (720)
T KOG0321|consen 305 ------------------------------------------ISPVAEFSGKLNSSFYVKSELSPDDCS-LLSGSSDEQA 341 (720)
T ss_pred ------------------------------------------cCchhhccCcccceeeeeeecCCCCce-EeccCCCcce
Confidence 111222333333333333347788887 9999999999
Q ss_pred EEEeCCCce-EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcc----cccchhhhhhcCCCee
Q 002782 424 RLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM----NLKAKAVVAAHGKDIN 498 (882)
Q Consensus 424 ~iwd~~~~~-~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~i~ 498 (882)
++|.+.+.. ....+.+|.-.|++++|.|..-.-+++++.|.++++|++..+-....... .......+.+|...+.
T Consensus 342 yiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~ 421 (720)
T KOG0321|consen 342 YIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVL 421 (720)
T ss_pred eeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccc
Confidence 999998754 34557799999999999886655689999999999999965532221110 0111222245555554
Q ss_pred EEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC----CCcEEEEecCCCceeeE-
Q 002782 499 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG----DKTIKIWSISDGSCLKT- 573 (882)
Q Consensus 499 ~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~iwd~~~~~~~~~- 573 (882)
.+.++-.+.+..-. .+..++|.. ...++-.|++.-...+.. .-.|........+....
T Consensus 422 nv~ss~~~t~~~pR--~~~~r~~ss---------------P~s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~ 484 (720)
T KOG0321|consen 422 NVNSSLRKTYKDPR--EGMNRISSS---------------PVSLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSR 484 (720)
T ss_pred cccccccccccchh--hhccccccC---------------ccchhcCcCCcccccCCCcccccccceecchhccCccccc
Confidence 44444333222211 222333321 122333444333332211 11244444333222211
Q ss_pred -eecCcCCEEEEEEEeCCCEEEEeec-----------CCeEEEEEcCCCeeEEEeccCCCceEEEEEcCC
Q 002782 574 -FEGHTSSVLRASFLTRGAQIVSCGA-----------DGLVKLWTVRTGECIATYDKHEDKIWALAVGKK 631 (882)
Q Consensus 574 -~~~h~~~v~~~~~s~~g~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~ 631 (882)
-.+|...|....+++.+..+++.+. ++.++.|............... ....+.|+|-
T Consensus 485 ~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~pps~~~r~ar-~~~r~ifs~~ 553 (720)
T KOG0321|consen 485 GSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHPPSANLREAR-KKSRLIFSPG 553 (720)
T ss_pred cccccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCCchhhhcccc-cccceeccCc
Confidence 1236667777777777778888887 8889998876554444333222 4555666653
No 147
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=1.8e-19 Score=200.97 Aligned_cols=374 Identities=34% Similarity=0.595 Sum_probs=293.1
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEeecCCC-cEEEEEE-ecCCCccEEEE-EeCCCcEE
Q 002782 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF-CTHYFKGHKG-VVSSILF-HPDTDKSLLFS-GSDDATVR 171 (882)
Q Consensus 96 ~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~-~~~~~~~h~~-~V~~l~f-~~~~~~~~l~s-gs~dg~I~ 171 (882)
..+..|...+..+.|.+.+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ .+++.. +++. +..|+.+.
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~ 137 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTVK 137 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcce-EEeccCCCCccEE
Confidence 3456789999999999999999999999999999999887 6777776443 7888887 666552 3444 44499999
Q ss_pred EEECCC-CeEEEEecCcccceEEEEEccCCCEEEEEeC-CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccc
Q 002782 172 VWDLLA-KKCVATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLS 249 (882)
Q Consensus 172 vwd~~~-~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (882)
+||... ......+..|...|..+.|+|++..+++++. |+.+++|+.....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 189 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---------------------------- 189 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc----------------------------
Confidence 999998 8888899999999999999999998888875 8888888865311
Q ss_pred cchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEE
Q 002782 250 SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLL 329 (882)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 329 (882)
T Consensus 190 -------------------------------------------------------------------------------- 189 (466)
T COG2319 190 -------------------------------------------------------------------------------- 189 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecC
Q 002782 330 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS 409 (882)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 409 (882)
....+.+|...+.+++ +.|+
T Consensus 190 ----------------------------------------------------------~~~~~~~~~~~v~~~~--~~~~ 209 (466)
T COG2319 190 ----------------------------------------------------------PLSTLAGHTDPVSSLA--FSPD 209 (466)
T ss_pred ----------------------------------------------------------eEEeeccCCCceEEEE--EcCC
Confidence 1112333666677776 5577
Q ss_pred CCEEEEEeecCCeEEEEeCCCceEEe-eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchh
Q 002782 410 GKILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488 (882)
Q Consensus 410 ~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 488 (882)
+..++++++.|+.+++||...+.... .+..|.... ...|++++ .++++++.|+.+++|+...... ...
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~---------~~~ 278 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS---------LLR 278 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc---------EEE
Confidence 76436666889999999988777777 678888775 44899998 4788999999999999886532 111
Q ss_pred hhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEe--cccCceEEEEEcCCCCEEEEe-eCCCcEEEEec
Q 002782 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSI 565 (882)
Q Consensus 489 ~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~-~~d~~i~iwd~ 565 (882)
....|...+.++.|+|++..+++++.|+.+.+|+........... .|...+..+.|.+++..++.+ ..|+.+.+|++
T Consensus 279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 115678899999999988888889999899999998887777666 788889999994332555555 68899999999
Q ss_pred CCCceeeEeecCcCCEEEEEEEeCCCEEEE-eecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCE
Q 002782 566 SDGSCLKTFEGHTSSVLRASFLTRGAQIVS-CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV 644 (882)
Q Consensus 566 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 644 (882)
...........+. .+..+.+.+ ...... +..++.+.+|+............+...+....+++++..+++++.++.+
T Consensus 359 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (466)
T COG2319 359 RTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTI 436 (466)
T ss_pred CCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcE
Confidence 8877333333222 278888888 544444 6889999999999998888777554789999999999999999999999
Q ss_pred EEEECCC
Q 002782 645 NLWHDST 651 (882)
Q Consensus 645 ~iw~~~~ 651 (882)
.+|+..+
T Consensus 437 ~~~~~~~ 443 (466)
T COG2319 437 RLWDLKT 443 (466)
T ss_pred EEEeccC
Confidence 9999887
No 148
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=183.31 Aligned_cols=287 Identities=17% Similarity=0.222 Sum_probs=225.1
Q ss_pred eEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEe
Q 002782 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 435 (882)
Q Consensus 356 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 435 (882)
..++.|++ .+.++|+|..+|.+.+||+.+....+.+.+|..+|.++. ++++|+. +++++.|..+.+||+..|.++.
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~--WS~dgr~-LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLC--WSRDGRK-LLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEE--ecCCCCE-eeeecCCceeEEEeccCCCcee
Confidence 56777776 889999999999999999999999999999999999998 9999998 9999999999999999999887
Q ss_pred eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCC
Q 002782 436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD 515 (882)
Q Consensus 436 ~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~d 515 (882)
.+. ..++|+.+.|+|...+..++.--+..-.+-++....... .+...-........+..|.+.|+++.+|...
T Consensus 102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~------Lp~d~d~dln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV------LPKDDDGDLNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee------ccCCCccccccccccccccCCCCEEEEecCc
Confidence 765 567999999999877766665555545555554321000 0000000011112334688999999999999
Q ss_pred CcEEEEeCCCceeEEEEeccc-CceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-------c--eeeEeec--CcCCEEE
Q 002782 516 RTACVWRLPDLVSVVTFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISDG-------S--CLKTFEG--HTSSVLR 583 (882)
Q Consensus 516 g~i~iwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-------~--~~~~~~~--h~~~v~~ 583 (882)
|.+.++|..+.+++..++-.. ..|..+.|+..|++|+.-+.|..||.|++..- + ..+.+.. ....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999999888765 78999999999999999999999999998631 1 1111111 1123456
Q ss_pred EEEEeCCCEEEEeecC-CeEEEEEcCCCeeEEEeccCC-CceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782 584 ASFLTRGAQIVSCGAD-GLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (882)
Q Consensus 584 ~~~s~~g~~l~s~~~d-g~i~iwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 654 (882)
++|+.+|.|++.++.. ..++||.-..|..+..+.+.. .....+.|.|-...+++- ..|.+.+|.....+.
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 8999999999887753 589999999999999998877 567788999998888887 778999999776543
No 149
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=5.2e-21 Score=195.62 Aligned_cols=279 Identities=20% Similarity=0.294 Sum_probs=204.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q 002782 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK 141 (882)
Q Consensus 62 ~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~ 141 (882)
.|..++|-|||..|+.+.. ..+.+||...|..+.++++|+..|.+++|+.||+++|+|+.|..|.+|+..-.-.+. +
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-Y- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-Y- 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee-e-
Confidence 7899999999998877654 479999999999999999999999999999999999999999999999975433222 2
Q ss_pred cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCce
Q 002782 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS 221 (882)
Q Consensus 142 ~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 221 (882)
.|...|.|+.|.|-... |++++-.. .-+|......... ......+.+.+|..||++++.|-.+|+|.+-+-....
T Consensus 91 SH~D~IQCMsFNP~~h~--LasCsLsd-FglWS~~qK~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe 165 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQ--LASCSLSD-FGLWSPEQKSVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE 165 (1081)
T ss_pred ccCCeeeEeecCchHHH--hhhcchhh-ccccChhhhhHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc
Confidence 49999999999997665 88877643 6789865543221 1123578899999999999999999998875422110
Q ss_pred eeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccC
Q 002782 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD 301 (882)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~ 301 (882)
T Consensus 166 -------------------------------------------------------------------------------- 165 (1081)
T KOG1538|consen 166 -------------------------------------------------------------------------------- 165 (1081)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEE
Q 002782 302 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 381 (882)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~ 381 (882)
.....+..|.+++|.+++|+|..+
T Consensus 166 -----------------------------------------k~~I~Rpgg~Nspiwsi~~~p~sg--------------- 189 (1081)
T KOG1538|consen 166 -----------------------------------------KVKIERPGGSNSPIWSICWNPSSG--------------- 189 (1081)
T ss_pred -----------------------------------------ceEEeCCCCCCCCceEEEecCCCC---------------
Confidence 011122334566777777766332
Q ss_pred eCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEee
Q 002782 382 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 461 (882)
Q Consensus 382 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~ 461 (882)
+.....+++.....++.++.+. |+.+..-..-.-...|+.+.++|. +++.|+
T Consensus 190 --------------------------~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGE-y~LiGG 241 (1081)
T KOG1538|consen 190 --------------------------EGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGE-YILLGG 241 (1081)
T ss_pred --------------------------CCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCc-EEEEcc
Confidence 0011125555556666666554 333332233334456888899987 889999
Q ss_pred CCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC
Q 002782 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (882)
Q Consensus 462 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~ 523 (882)
.|+.+.+|.-... ...+.......|..++..|+++.++.|+.||+|.-|++
T Consensus 242 sdk~L~~fTR~Gv-----------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 242 SDKQLSLFTRDGV-----------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCCceEEEeecCe-----------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9999999975532 33344446678999999999999999999999999876
No 150
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.7e-24 Score=220.55 Aligned_cols=222 Identities=29% Similarity=0.516 Sum_probs=198.9
Q ss_pred EEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhc
Q 002782 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493 (882)
Q Consensus 414 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 493 (882)
++.+..+-.+++||... +..|...+.++..-..+ ..+++|+.|..+-+|.+.... ....+.+|
T Consensus 7 ~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~----------~i~S~~~h 69 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPN----------AITSLTGH 69 (825)
T ss_pred cceeeeeeccccccchh------hhhhhhhhceeeeeccc-eeeccCCCceeeccccccCCc----------hhheeecc
Confidence 44444455677888654 45677888888774444 489999999999999986542 33347889
Q ss_pred CCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeE
Q 002782 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (882)
Q Consensus 494 ~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 573 (882)
..+|.++.|+++..+|++|+.+|+|++||++..+.+.++.+|...+.+++|+|-+.+.+.|+.|+.+++||++...|...
T Consensus 70 espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 70 ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782 574 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (882)
Q Consensus 574 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~ 652 (882)
+.+|...+..+.|+|+|+++++++.|..++|||+..|+.+..|..|++.+.++.|+|..-++++||.|+++++|++.+-
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998853
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.8e-21 Score=178.84 Aligned_cols=272 Identities=16% Similarity=0.299 Sum_probs=193.9
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEE
Q 002782 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG----GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (882)
Q Consensus 99 ~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~----~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd 174 (882)
.+|..-|.++.|++.|+++|+|+.|++|+|||... -.+....+.|.+.|..+.|.+..-+..+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46888999999999999999999999999999643 35777889999999999997766778899999999999996
Q ss_pred CCC---------CeEEEEecCcccceEEEEEccC--CCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCC
Q 002782 175 LLA---------KKCVATLDKHFSRVTSMAITSD--GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243 (882)
Q Consensus 175 ~~~---------~~~~~~l~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (882)
-.. .....++....+.|+.+.|.|. |-.|++++.||.+|+|+..+.-.+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL-------------------- 149 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL-------------------- 149 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc--------------------
Confidence 521 1245577788899999999984 668899999999999987543221
Q ss_pred cccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEE
Q 002782 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323 (882)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 323 (882)
+-|.+... +..+ .
T Consensus 150 ---------------------------------s~W~Lq~E----------------------i~~~-~----------- 162 (361)
T KOG2445|consen 150 ---------------------------------SQWTLQHE----------------------IQNV-I----------- 162 (361)
T ss_pred ---------------------------------ccchhhhh----------------------hhhc-c-----------
Confidence 11221110 0000 0
Q ss_pred eCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEee
Q 002782 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 403 (882)
Q Consensus 324 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 403 (882)
.....+..+..|+.
T Consensus 163 ------------------------------------------------------------------~pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 163 ------------------------------------------------------------------DPPGKNKQPCFCVS 176 (361)
T ss_pred ------------------------------------------------------------------CCcccccCcceEEe
Confidence 00001222233333
Q ss_pred eeeecCCCEEEEEeecC-----CeEEEEeCCCc----eEEeeeecccccEEEEEEccCCC---cEEEEeeCCCeEEEEec
Q 002782 404 TCALSSGKILIVTGSKD-----NSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSF 471 (882)
Q Consensus 404 ~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~~~~~v~~v~~s~~~~---~~l~s~~~dg~i~~wd~ 471 (882)
++.+.-...+|+.|+.+ +.+.||....+ ..+..+.+|..+|+.++|.|+-. .++++++.|| |+||++
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 32222222335555544 35677765432 23455779999999999999643 3799999999 999999
Q ss_pred CCCC----------CCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC
Q 002782 472 DGLS----------DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (882)
Q Consensus 472 ~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~ 524 (882)
.... ..............+..|.+.|..+.|+--|..|++.+.||.|++|...
T Consensus 256 ~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 256 KVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 8521 1112223444556678899999999999999999999999999999754
No 152
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=190.21 Aligned_cols=291 Identities=15% Similarity=0.274 Sum_probs=221.5
Q ss_pred CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCC--CeEEEEecCcccceEEEEEccCCC-EEEEEeCCCeEEEEecCC
Q 002782 143 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA--KKCVATLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRD 219 (882)
Q Consensus 143 h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~--~~~~~~l~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~vwd~~~ 219 (882)
..+.|+++.|+|.. .+|++++.||.+++|.+.. ...++.+.-...+|.+.+|.|+|. .++++++...++.||+.+
T Consensus 212 s~~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 212 SHGGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CcCCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 35789999999964 5699999999999998754 446677766778999999999999 899999999999999977
Q ss_pred ceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeec
Q 002782 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299 (882)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~ 299 (882)
.+..+.-+...
T Consensus 290 ak~~k~~~~~g--------------------------------------------------------------------- 300 (514)
T KOG2055|consen 290 AKVTKLKPPYG--------------------------------------------------------------------- 300 (514)
T ss_pred cccccccCCCC---------------------------------------------------------------------
Confidence 65432211110
Q ss_pred cCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCc-eEEEEEeCCCCcEEEEEEcCCcE
Q 002782 300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE-ILDLKFLGEEEQYLAVATNIEQV 378 (882)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~~~~i 378 (882)
+... +.... .++++++++..++.|.|
T Consensus 301 ----------------------------------------------------~e~~~~e~Fe-VShd~~fia~~G~~G~I 327 (514)
T KOG2055|consen 301 ----------------------------------------------------VEEKSMERFE-VSHDSNFIAIAGNNGHI 327 (514)
T ss_pred ----------------------------------------------------cccchhheeE-ecCCCCeEEEcccCceE
Confidence 0000 00011 12366688889999999
Q ss_pred EEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccc-cEEEEEEccCCCcEE
Q 002782 379 QVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG-AVGAVAFSKKLQNFL 457 (882)
Q Consensus 379 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~s~~~~~~l 457 (882)
.+....+++.+..+.- .+.+..+. |+.+++. +++.+.+|.|.+||+....++..+....+ .-+++|.++++. ++
T Consensus 328 ~lLhakT~eli~s~Ki-eG~v~~~~--fsSdsk~-l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-yl 402 (514)
T KOG2055|consen 328 HLLHAKTKELITSFKI-EGVVSDFT--FSSDSKE-LLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YL 402 (514)
T ss_pred Eeehhhhhhhhheeee-ccEEeeEE--EecCCcE-EEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eE
Confidence 9999998887766653 45666666 8899987 67777789999999999988887764322 345677888877 89
Q ss_pred EEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC--CCcEEEEeCCCceeEEEEecc
Q 002782 458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACVWRLPDLVSVVTFRGH 535 (882)
Q Consensus 458 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~--dg~i~iwd~~~~~~~~~~~~h 535 (882)
++|+..|.|.|||.++..... ..++...+..-...|+++.|+|++++||.+|. +..+++-.+++......+...
T Consensus 403 A~GS~~GiVNIYd~~s~~~s~----~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~ 478 (514)
T KOG2055|consen 403 ATGSDSGIVNIYDGNSCFAST----NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS 478 (514)
T ss_pred EeccCcceEEEeccchhhccC----CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC
Confidence 999999999999976542211 22344555556678999999999999998875 457999998888777666654
Q ss_pred c---CceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782 536 K---RGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (882)
Q Consensus 536 ~---~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~ 566 (882)
. +.|+|++|||.+.++|.|..+|.+.+|.+.
T Consensus 479 n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 479 NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 3 458999999999999999999999999874
No 153
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=9.8e-19 Score=194.98 Aligned_cols=373 Identities=34% Similarity=0.614 Sum_probs=285.3
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEeecCCC-CEEEEEE-cCCCC-EEEEEeC-CCcEEEE
Q 002782 55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CLRSWKGHDG-PAIGMAC-HPSGG-LLATAGA-DRKVLVW 129 (882)
Q Consensus 55 ~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~-~~~~~~~h~~-~V~~l~f-s~~~~-~lasg~~-dg~v~vw 129 (882)
.+.+|...+.++.+.+.+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 466789999999999999999999999999999998887 7777777443 7888888 88888 5555444 8999999
Q ss_pred ECCC-CeEEEEeecCCCcEEEEEEecCCCccEEEEEeC-CCcEEEEECCCCeEEEEecCcccceEEEEEccCCC-EEEEE
Q 002782 130 DVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD-DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISA 206 (882)
Q Consensus 130 d~~~-~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~-dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~-~l~s~ 206 (882)
|... ......+..|...|..++|+|++. .+++++. |+.+++|+...+..+..+.+|...|.++.|+|++. .++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 9998 888888999999999999999876 4777775 99999999999999999999999999999999998 55555
Q ss_pred eCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCcee
Q 002782 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286 (882)
Q Consensus 207 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~ 286 (882)
+.|+.+++||.........
T Consensus 218 ~~d~~i~~wd~~~~~~~~~------------------------------------------------------------- 236 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRS------------------------------------------------------------- 236 (466)
T ss_pred cCCCcEEEEECCCCcEEee-------------------------------------------------------------
Confidence 8899999986542211100
Q ss_pred eeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCC
Q 002782 287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 366 (882)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 366 (882)
T Consensus 237 -------------------------------------------------------------------------------- 236 (466)
T COG2319 237 -------------------------------------------------------------------------------- 236 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE-EeeeecccccEE
Q 002782 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAVG 445 (882)
Q Consensus 367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~ 445 (882)
.+.+|.... ... +.+++.. +++++.|+.+++|+...... +.....|...+.
T Consensus 237 ------------------------~~~~~~~~~-~~~--~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 288 (466)
T COG2319 237 ------------------------TLSGHSDSV-VSS--FSPDGSL-LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288 (466)
T ss_pred ------------------------ecCCCCcce-eEe--ECCCCCE-EEEecCCCcEEEeeecCCCcEEEEEecCCccEE
Confidence 111122211 001 5566644 67888899999999876554 444467889999
Q ss_pred EEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE-cCCCcEEEEeCC
Q 002782 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLP 524 (882)
Q Consensus 446 ~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-s~dg~i~iwd~~ 524 (882)
++.|.|++. .+++++.|+.+.+|+........ ... ...|...+..+.+.+++..++.+ ..|+.+.+|+..
T Consensus 289 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 289 SVAFSPDGK-LLASGSSDGTVRLWDLETGKLLS-------SLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred EEEECCCCC-EEEEeeCCCcEEEEEcCCCceEE-------Eee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence 999999766 55668888999999876542111 111 34566678999994343455555 688999999998
Q ss_pred CceeEEEEecccCceEEEEEcCCCCEEEE-eeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEE
Q 002782 525 DLVSVVTFRGHKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 603 (882)
Q Consensus 525 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~ 603 (882)
.......... ...+..+.+++ ...+.. +..++.+.+|+............+...+....+++++..+++++.++.++
T Consensus 360 ~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (466)
T COG2319 360 TGKPLKTLEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437 (466)
T ss_pred CCceeEEecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEE
Confidence 8773333332 22288999999 544444 68899999999998888777765547888899999999999999999999
Q ss_pred EEEcCC
Q 002782 604 LWTVRT 609 (882)
Q Consensus 604 iwd~~~ 609 (882)
+|+..+
T Consensus 438 ~~~~~~ 443 (466)
T COG2319 438 LWDLKT 443 (466)
T ss_pred EEeccC
Confidence 999987
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.2e-21 Score=190.88 Aligned_cols=284 Identities=12% Similarity=0.130 Sum_probs=231.1
Q ss_pred cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc--eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCC
Q 002782 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM--SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 429 (882)
Q Consensus 352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 429 (882)
..+.|.++.|.| ....+++++-|+.+++|.+... ..+..+.-...+|.+.. +.|+|...+++++....++.||+.
T Consensus 212 s~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~--f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 212 SHGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAE--FAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CcCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceee--ecCCCceEEEecccceEEEEeecc
Confidence 457899999998 7889999999999999987643 34555555667888877 889999669999999999999999
Q ss_pred CceEEee--eecc-cccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC
Q 002782 430 SRCCVGV--GTGH-MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (882)
Q Consensus 430 ~~~~~~~--~~~~-~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (882)
+.+.... ..++ ...+....++++++ +++..+..|.|.+....+. .........+.|..++|+.++
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~-----------eli~s~KieG~v~~~~fsSds 356 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTK-----------ELITSFKIEGVVSDFTFSSDS 356 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhh-----------hhhheeeeccEEeeEEEecCC
Confidence 8875543 2233 34577788899987 8999999999999887654 222223355788999999999
Q ss_pred cEEEEEcCCCcEEEEeCCCceeEEEEeccc-CceEEEEEcCCCCEEEEeeCCCcEEEEecCC------CceeeEeecCcC
Q 002782 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISD------GSCLKTFEGHTS 579 (882)
Q Consensus 507 ~~la~~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~~h~~ 579 (882)
+.|++.+.+|.|.+||++...++..+.... -.-+++|.|+++.+||+|+..|.|.|||..+ .++++++..-..
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt 436 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT 436 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe
Confidence 999999999999999999998888877422 2346788899999999999999999999653 366777777778
Q ss_pred CEEEEEEEeCCCEEEEeec--CCeEEEEEcCCCeeEEEeccC---CCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782 580 SVLRASFLTRGAQIVSCGA--DGLVKLWTVRTGECIATYDKH---EDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 580 ~v~~~~~s~~g~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~ 650 (882)
.|+.++|++|++.|+.+|. +..+++-.+.+......+... -+.|+|++|||.+.+|+.|..+|.+.+|++.
T Consensus 437 ~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 437 AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999999999988776 568999998888777766543 3678999999999999999999999999864
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2e-21 Score=191.07 Aligned_cols=291 Identities=21% Similarity=0.266 Sum_probs=226.4
Q ss_pred eeecccCCceEEEEEeCCCC-cEEEEEEcCCcEEEEeCCC----ceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCC
Q 002782 347 KRLVGYNEEILDLKFLGEEE-QYLAVATNIEQVQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421 (882)
Q Consensus 347 ~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 421 (882)
....-+.+.|.++.|.|... .++++|...|+|-+||+.+ ...+..+..|..+|.++. |+|.+...+++.+.||
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~--F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLK--FSPANTSQIYSSSYDG 257 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceE--ecCCChhheeeeccCc
Confidence 34445678999999999877 8999999999999999953 233567789999999999 8888877799999999
Q ss_pred eEEEEeCCCceEEeeeec--ccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeE
Q 002782 422 SVRLWDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (882)
Q Consensus 422 ~i~iwd~~~~~~~~~~~~--~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (882)
+|++-|++++..-..+.. ....+..+.|+.+.+. ++.+..=|...+||++.... ......-|...|++
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~-vl~~~~~G~f~~iD~R~~~s---------~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRS-VLFGDNVGNFNVIDLRTDGS---------EYENLRLHKKKITS 327 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCcc-EEEeecccceEEEEeecCCc---------cchhhhhhhcccce
Confidence 999999998754433333 5556777888887764 55666666999999987642 23444568889999
Q ss_pred EEEcCC-CcEEEEEcCCCcEEEEeCCCce----eEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC----CCce
Q 002782 500 LAVAPN-DSLVCTGSQDRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS----DGSC 570 (882)
Q Consensus 500 ~~~s~~-~~~la~~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~----~~~~ 570 (882)
++++|. ..++|+++.|++++|||++... ++.....|...|.+..|||++..|+|.+.|..|+|||.. ....
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 999995 4689999999999999997642 234445699999999999999889999999999999983 2333
Q ss_pred eeEeecCcC------CEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCC-ceEEE-EEcCCCCEEEE-EeCC
Q 002782 571 LKTFEGHTS------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED-KIWAL-AVGKKTEMFAT-GGSD 641 (882)
Q Consensus 571 ~~~~~~h~~------~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l-~~s~~~~~l~s-~~~d 641 (882)
..++. |.. ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+..+++ ++..
T Consensus 408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 408 LGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS 486 (498)
T ss_pred cceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence 44443 332 345578999999999999988999999999998888765543 66665 78998884554 5567
Q ss_pred CCEEEEECC
Q 002782 642 ALVNLWHDS 650 (882)
Q Consensus 642 g~i~iw~~~ 650 (882)
|.|.||-..
T Consensus 487 Gki~vft~k 495 (498)
T KOG4328|consen 487 GKIYVFTNK 495 (498)
T ss_pred ceEEEEecC
Confidence 888888643
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.8e-21 Score=197.17 Aligned_cols=216 Identities=17% Similarity=0.220 Sum_probs=173.5
Q ss_pred CCeEEEEeCCCc----eEEeeeecccccEEEEEEccCCCcEEEEeeC---CCeEEEEecCCCCCCCCCcccccchhhhhh
Q 002782 420 DNSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (882)
Q Consensus 420 dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 492 (882)
++.+..|.-... .-+...-.|...|..+.|+..|. +|++... ...|.+.++.... ....+..
T Consensus 496 ~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~----------sQ~PF~k 564 (733)
T KOG0650|consen 496 DAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRK----------SQSPFRK 564 (733)
T ss_pred cccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEeccccc----------ccCchhh
Confidence 345566654321 11334456889999999999998 6666644 3568888886542 2233444
Q ss_pred cCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-cee
Q 002782 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCL 571 (882)
Q Consensus 493 ~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~ 571 (882)
..+.|.++.|+|...+|++++. ..|+|||+.....+..+......|.+++.+|.|.-|+.|+.|+.+..||++-+ ++.
T Consensus 565 skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy 643 (733)
T KOG0650|consen 565 SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY 643 (733)
T ss_pred cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh
Confidence 5678899999999999998875 67999999988888888778888999999999999999999999999999755 577
Q ss_pred eEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC-------CC--eeEEEeccCCCc----eEEEEEcCCCCEEEEE
Q 002782 572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR-------TG--ECIATYDKHEDK----IWALAVGKKTEMFATG 638 (882)
Q Consensus 572 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~-------~~--~~~~~~~~h~~~----v~~l~~s~~~~~l~s~ 638 (882)
+++..|...++.++|++.-.++++|+.||.+.|+.-. +. -++..+.+|... |....|+|...+|+++
T Consensus 644 k~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsA 723 (733)
T KOG0650|consen 644 KTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSA 723 (733)
T ss_pred HHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEec
Confidence 8888999999999999999999999999999998532 11 245677788755 8899999999999999
Q ss_pred eCCCCEEEE
Q 002782 639 GSDALVNLW 647 (882)
Q Consensus 639 ~~dg~i~iw 647 (882)
|.||+|++|
T Consensus 724 GAd~tirlf 732 (733)
T KOG0650|consen 724 GADGTIRLF 732 (733)
T ss_pred CCCceEEee
Confidence 999999998
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=3.4e-21 Score=189.36 Aligned_cols=306 Identities=17% Similarity=0.263 Sum_probs=223.4
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC----eEEEEecCcccceEEEEEccCC-CEE
Q 002782 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDKHFSRVTSMAITSDG-STL 203 (882)
Q Consensus 129 wd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~----~~~~~l~~h~~~v~~l~~s~~~-~~l 203 (882)
.|+..-......+-+.++|++++|+|..+..++++|..-|.|-+||+.+. .-+..+..|..+|.++.|+|.. ..+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 34444455556677899999999999988889999999999999999532 2456778899999999999854 578
Q ss_pred EEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCC
Q 002782 204 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (882)
Q Consensus 204 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~ 283 (882)
++.+.||+|+.-|++....-..+.
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s-------------------------------------------------------- 274 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLS-------------------------------------------------------- 274 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhh--------------------------------------------------------
Confidence 889999999988876432100000
Q ss_pred ceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeC
Q 002782 284 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363 (882)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 363 (882)
.
T Consensus 275 -------------------------------------------------------------------------------~ 275 (498)
T KOG4328|consen 275 -------------------------------------------------------------------------------L 275 (498)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE-Eeeeecccc
Q 002782 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMG 442 (882)
Q Consensus 364 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~ 442 (882)
++. ......++ ++.+... ++.+..=|.+.+||..++.. ...+..|..
T Consensus 276 ~~d-----------------------------~~~fs~~d--~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 276 DTD-----------------------------NIWFSSLD--FSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred Ccc-----------------------------ceeeeecc--ccCCCcc-EEEeecccceEEEEeecCCccchhhhhhhc
Confidence 000 00011111 4444444 55555556888899887544 666778888
Q ss_pred cEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEe
Q 002782 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (882)
Q Consensus 443 ~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd 522 (882)
.|++++++|..+.++++++.|++.++||++....... +......|...|++..|||.+-.|++.+.|..|+|||
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCC------cceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 9999999999999999999999999999987643222 1344567999999999999888899999999999999
Q ss_pred CC----CceeEEEEecccC------ceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcC-CEEE-EEEEeCC
Q 002782 523 LP----DLVSVVTFRGHKR------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLR-ASFLTRG 590 (882)
Q Consensus 523 ~~----~~~~~~~~~~h~~------~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v~~-~~~s~~g 590 (882)
.. ...+..++. |+. ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.+ ..|+|-+
T Consensus 398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred cccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 83 344444444 322 234568999999999999988999999988887877654433 4544 4789988
Q ss_pred CEEEEee-cCCeEEEEEcC
Q 002782 591 AQIVSCG-ADGLVKLWTVR 608 (882)
Q Consensus 591 ~~l~s~~-~dg~i~iwd~~ 608 (882)
..+++|+ ..|.|+||.-+
T Consensus 477 ~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 477 DTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cceeccCCccceEEEEecC
Confidence 7555555 46789988644
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=1.7e-20 Score=176.69 Aligned_cols=293 Identities=18% Similarity=0.252 Sum_probs=221.3
Q ss_pred eecccCCceEEEEEeC---C-CCcEEEEEEcCCcEEEEeCCCceeeeeee-----CCCcceEEeeeeeecC-CCEEEEEe
Q 002782 348 RLVGYNEEILDLKFLG---E-EEQYLAVATNIEQVQVYDLSSMSCSYVLA-----GHSEIVLCLDTCALSS-GKILIVTG 417 (882)
Q Consensus 348 ~~~~~~~~i~~~~~~~---~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-~~~~l~~~ 417 (882)
...+|+.+|.++.|.+ . ..+.+++++ ...+.+|.....-.++.++ .|......++++.... ++.++++|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3456778888888863 2 334444444 4788888866443333332 3555666666655444 56779999
Q ss_pred ecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCe
Q 002782 418 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 497 (882)
Q Consensus 418 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i 497 (882)
+.-|.|++.|+.++++...+.+|...|..+.+.|...++++++|.|.+|++|++.+.. -.-...-..+|...|
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~-------Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV-------CVAVFGGVEGHRDEV 184 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe-------EEEEecccccccCcE
Confidence 9999999999999999999999999999999999999999999999999999998652 111233356899999
Q ss_pred eEEEEcCCCcEEEEEcCCCcEEEEeCCCcee-------------------------EE---EEecccCceEEEEEcCCCC
Q 002782 498 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVS-------------------------VV---TFRGHKRGIWSVEFSPVDQ 549 (882)
Q Consensus 498 ~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~-------------------------~~---~~~~h~~~v~~l~~s~~~~ 549 (882)
.++.|+++|.++++++.|.++++|++...+. .. +-.-|...|-|+.|- |.
T Consensus 185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd 262 (385)
T KOG1034|consen 185 LSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD 262 (385)
T ss_pred EEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh
Confidence 9999999999999999999999999972210 00 122367777777776 68
Q ss_pred EEEEeeCCCcEEEEecC-CC-------------ceeeEeecCcCCEEEEEEE--eCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782 550 VVITASGDKTIKIWSIS-DG-------------SCLKTFEGHTSSVLRASFL--TRGAQIVSCGADGLVKLWTVRTGECI 613 (882)
Q Consensus 550 ~l~s~~~d~~i~iwd~~-~~-------------~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~dg~i~iwd~~~~~~~ 613 (882)
++++-|.++.|..|..- -+ ..+..+.-....|+-+.|. |-++.|+.|...|.|.+||+++.++.
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 99999999999999861 11 2234455556677777665 56789999999999999999987763
Q ss_pred --EEec--cCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782 614 --ATYD--KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 614 --~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~ 650 (882)
.++. .....|...+||.||..|+..++|++|--||..
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 2222 123578889999999999999999999999864
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=2.7e-20 Score=175.37 Aligned_cols=315 Identities=21% Similarity=0.319 Sum_probs=224.1
Q ss_pred eecCCCccEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCe---eEEEee--cCCCCEEEEEEcCC----CCEEEEE
Q 002782 55 TIEGGSDTITALALSP-----DDKLLFSSGHSREIRVWDLSTLK---CLRSWK--GHDGPAIGMACHPS----GGLLATA 120 (882)
Q Consensus 55 ~l~~~~~~I~~l~~sp-----d~~~las~~~dg~i~iwd~~~~~---~~~~~~--~h~~~V~~l~fs~~----~~~lasg 120 (882)
..+.|..+|..++|.+ .-..+|+++. ..+.+|.....- .+.+.. .|......++|+-+ ..+||.|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3456888999999985 2245555554 578888876433 233322 25666777777653 4589999
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEe---cCcccceEEEEEc
Q 002782 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVTSMAIT 197 (882)
Q Consensus 121 ~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l---~~h~~~v~~l~~s 197 (882)
|.-|.|+|.|+.++++...+.+|.+.|..+.|+|+ +.++++++|.|..|++|++++..|+..+ .+|.+.|.++.|+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 99999999999999999999999999999999998 5578999999999999999999999887 6799999999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEE
Q 002782 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR 277 (882)
Q Consensus 198 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 277 (882)
++|.+++++|.|.++++|++...+....+... ..+.+++..
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s-----~~~~~~~t~---------------------------------- 231 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELS-----ITYSPNKTT---------------------------------- 231 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhHHhhhhhhh-----cccCCCCcc----------------------------------
Confidence 99999999999999999999854432221110 111111110
Q ss_pred EEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceE
Q 002782 278 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL 357 (882)
Q Consensus 278 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 357 (882)
+.+ |. ....++......-|...|-
T Consensus 232 ---------------------------~pf------pt-----------------------~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 232 ---------------------------RPF------PT-----------------------PKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ---------------------------CcC------Cc-----------------------cccccccccccccccchHH
Confidence 000 00 0001111112234667778
Q ss_pred EEEEeCCCCcEEEEEEcCCcEEEEeCCC-cee-------------eeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeE
Q 002782 358 DLKFLGEEEQYLAVATNIEQVQVYDLSS-MSC-------------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (882)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~-------------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 423 (882)
++.|.. +++++-+.++.|..|.... .+. ...+.-....+.-+.+.+.+-++. ++.|...|.+
T Consensus 256 Cvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~-la~gnq~g~v 331 (385)
T KOG1034|consen 256 CVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM-LALGNQSGKV 331 (385)
T ss_pred HHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH-HhhccCCCcE
Confidence 888864 5777777888999998721 111 122333445566666667777776 9999999999
Q ss_pred EEEeCCCceEEe--ee--ecccccEEEEEEccCCCcEEEEeeCCCeEEEEec
Q 002782 424 RLWDSESRCCVG--VG--TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (882)
Q Consensus 424 ~iwd~~~~~~~~--~~--~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~ 471 (882)
.+||+....... ++ ......|...+|+.++. +|+....|++|.-||.
T Consensus 332 ~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDR 382 (385)
T ss_pred EEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEe
Confidence 999998765521 11 12345789999999987 8888999999999985
No 160
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.1e-18 Score=182.07 Aligned_cols=580 Identities=13% Similarity=0.144 Sum_probs=355.7
Q ss_pred CceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCC------------CCEEEEEeCCCcEEEEECC
Q 002782 23 GPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPD------------DKLLFSSGHSREIRVWDLS 90 (882)
Q Consensus 23 ~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd------------~~~las~~~dg~i~iwd~~ 90 (882)
+++.|+|.| ++|+|++..|.+.|..+.+.++.++.|...|+.+.|.|- .-+||++...|.|.+||..
T Consensus 19 ~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~ 97 (1062)
T KOG1912|consen 19 NAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV 97 (1062)
T ss_pred cccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence 478888877 899999999999999999999999999999999999873 2357888889999999999
Q ss_pred CCeeEEEeecCCCCEEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeC
Q 002782 91 TLKCLRSWKGHDGPAIGMACHP---SG-GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166 (882)
Q Consensus 91 ~~~~~~~~~~h~~~V~~l~fs~---~~-~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~ 166 (882)
.+..+..+..|..+|..++|-+ +. .+|+.-....++.+|+..+|..+...........|+.+.|-+.+.+.+.|+
T Consensus 98 ~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s- 176 (1062)
T KOG1912|consen 98 LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGS- 176 (1062)
T ss_pred hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEcc-
Confidence 9999999999999999999976 33 456666677899999999999988877666777889999876655555554
Q ss_pred CCcEEEEECC-------CCeEEEEecCccc----------------c---------eEEEEEccCCCEEEEEeCCCeEEE
Q 002782 167 DATVRVWDLL-------AKKCVATLDKHFS----------------R---------VTSMAITSDGSTLISAGRDKVVNL 214 (882)
Q Consensus 167 dg~I~vwd~~-------~~~~~~~l~~h~~----------------~---------v~~l~~s~~~~~l~s~~~dg~i~v 214 (882)
.|.+.+-+.- .++.++.-..|.+ . ...++|+|.-+.++.......+.+
T Consensus 177 ~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv 256 (1062)
T KOG1912|consen 177 KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLV 256 (1062)
T ss_pred CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEE
Confidence 4555555432 2333333333322 0 113567887777777777888999
Q ss_pred EecCCceeeeeecCcce-eeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCc-eeeeecCC
Q 002782 215 WDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSS 292 (882)
Q Consensus 215 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~-~~~~~~~~ 292 (882)
+|++-..++..++.... ..-+.+.|++. ...++++..+|.+.+|-.+.. ..+.....
T Consensus 257 ~dle~~~~l~vvpier~~akfv~vlP~~~---------------------rd~LfclH~nG~ltirvrk~~~~~f~~~~~ 315 (1062)
T KOG1912|consen 257 FDLEYECCLAVVPIERGGAKFVDVLPDPR---------------------RDALFCLHSNGRLTIRVRKEEPTEFKKPNA 315 (1062)
T ss_pred EcchhhceeEEEEeccCCcceeEeccCCC---------------------cceEEEEecCCeEEEEEeeccCccccccch
Confidence 99998888887776543 34445555553 347899999999999986653 11111100
Q ss_pred ceeeee------ccCCcCcceeEEEEccC-CCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCC-
Q 002782 293 DVTISF------EMDDSKRGFTAATVLPS-NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE- 364 (882)
Q Consensus 293 ~~~~~~------~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 364 (882)
...... ...-....+......|. ...+.+...+|...+|.+..+..... ...+..+-+....|...
T Consensus 316 ~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~------~~s~~iel~~pf~f~~~~ 389 (1062)
T KOG1912|consen 316 SLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLD------YRSSSIELVLPFDFNLST 389 (1062)
T ss_pred hhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcc------cccccccccccccccCce
Confidence 000000 00001112233334455 45566677788888888774321100 00011111111222110
Q ss_pred ---CCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCC------EEEEEeecCCeEEEEeCCCceEEe
Q 002782 365 ---EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK------ILIVTGSKDNSVRLWDSESRCCVG 435 (882)
Q Consensus 365 ---~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~ 435 (882)
....+..-+.|| ...+|....... ..+-..+.. ..|.++ .+++.|...|+|.++|+.++....
T Consensus 390 ~~v~k~~l~~LS~dg-----~h~sGs~~~~~~--p~p~~t~~~-~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~ 461 (1062)
T KOG1912|consen 390 KLVGKTSLISLSDDG-----SHSSGSTCVRMR--PMPELTKVE-NDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAA 461 (1062)
T ss_pred eehhhccccchhhcC-----CCCCCceeeecc--cCcccceee-cCCCCCccceeeeeEEeecCCceEEEEEecchhhhh
Confidence 011111112222 111111111111 111011110 111111 268999999999999999999999
Q ss_pred eeecccccEEEEEEccCCCcEEEEeeC----------CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC
Q 002782 436 VGTGHMGAVGAVAFSKKLQNFLVSGSS----------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (882)
Q Consensus 436 ~~~~~~~~v~~v~~s~~~~~~l~s~~~----------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (882)
.+..|.+.|.++.|..... +++.+. -+.+.+-|++++-.. ...........+|..+..|..
T Consensus 462 ~fsvht~~VkgleW~g~ss--lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk-------~fR~l~~~despI~~irvS~~ 532 (1062)
T KOG1912|consen 462 SFSVHTSLVKGLEWLGNSS--LVSFSYSHVNSASGGVRNDLVVTDLRTGLSK-------RFRGLQKPDESPIRAIRVSSS 532 (1062)
T ss_pred hhcccccceeeeeecccee--EEEeeeccccccccceeeeEEEEEccccccc-------ccccCCCCCcCcceeeeeccc
Confidence 9999999999999986644 444432 244667777766211 122222345678999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCceeE----------EEEe----cc------------------------cCce--------
Q 002782 506 DSLVCTGSQDRTACVWRLPDLVSV----------VTFR----GH------------------------KRGI-------- 539 (882)
Q Consensus 506 ~~~la~~s~dg~i~iwd~~~~~~~----------~~~~----~h------------------------~~~v-------- 539 (882)
|+|++....+.-+.+||+++..++ ..+. .| ...+
T Consensus 533 ~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~ 612 (1062)
T KOG1912|consen 533 GRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSAL 612 (1062)
T ss_pred CceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhh
Confidence 999999999999999998543211 1110 01 0001
Q ss_pred -------------------EEEEEcCCCCEEEEeeCCCcEEEEecCCCceee--EeecCcCCEEEEEEEeCCCEEEEeec
Q 002782 540 -------------------WSVEFSPVDQVVITASGDKTIKIWSISDGSCLK--TFEGHTSSVLRASFLTRGAQIVSCGA 598 (882)
Q Consensus 540 -------------------~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~g~~l~s~~~ 598 (882)
..++| .+..++.|..+|++.+||+....-.. ....|........+.|....++.--.
T Consensus 613 ~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~~~lvl~~ 690 (1062)
T KOG1912|consen 613 VVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAHSLTFPQIPGDHTTLVLEL 690 (1062)
T ss_pred hhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCCCchhhheecccCCCCceEEEEec
Confidence 11222 26689999999999999975332211 12223333333444554334444444
Q ss_pred CCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782 599 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (882)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~ 651 (882)
|+ +-+||.+.-..+..+.+-+..-..+...-++..=..-..|.++++-....
T Consensus 691 d~-~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~~d~~~Rf~~m~m 742 (1062)
T KOG1912|consen 691 DW-LPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLPNDNKERFRVMPM 742 (1062)
T ss_pred Cc-ceecccccceeeeeeccCCcceEEEEEEecccCceecCCCCceeEEeccc
Confidence 44 78899888888887766555544444433333222223344667655443
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=1.7e-20 Score=179.94 Aligned_cols=247 Identities=24% Similarity=0.359 Sum_probs=188.9
Q ss_pred eecccCCceEEEEEeCC-CCcEEEEEEcCCcEEEEeCCC----------------ceeeeeeeCCCcceEEeeeeeecCC
Q 002782 348 RLVGYNEEILDLKFLGE-EEQYLAVATNIEQVQVYDLSS----------------MSCSYVLAGHSEIVLCLDTCALSSG 410 (882)
Q Consensus 348 ~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~i~i~d~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~ 410 (882)
...+|.+.+..++..+- +..+.++-+..|.|.||++.. .+.+.++.+|...-+.++ |+|-.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld--WSp~~ 223 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD--WSPIK 223 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee--ccccc
Confidence 34455566666665554 455667778889999999752 345677889998888888 66633
Q ss_pred CEEEEEeecCCeEEEEeCCCceEEe---eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccch
Q 002782 411 KILIVTGSKDNSVRLWDSESRCCVG---VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 487 (882)
Q Consensus 411 ~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 487 (882)
.-.+++|.--+.|++|...++.-.. .+.+|+..|-.++|||....+|++||-||+|+|||++..... ..
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~--------~~ 295 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK--------AA 295 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--------ce
Confidence 3337888888999999988875432 356799999999999999999999999999999999876321 23
Q ss_pred hhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCC---ceeEEEEecccCceEEEEEcCC-CCEEEEeeCCCcEEEE
Q 002782 488 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD---LVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIW 563 (882)
Q Consensus 488 ~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iw 563 (882)
....+|..+|+.+.|+.+-.+||+|+.||+++|||+++ ++++..|+-|..+|++|.|+|. ...|++++.|.+|.+|
T Consensus 296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence 33488999999999999988999999999999999975 4778899999999999999995 5678889999999999
Q ss_pred ecCCCce-----------e-----eEeecCc--CCEEEEEEEeC-CCEEEEeecCCeEEEE
Q 002782 564 SISDGSC-----------L-----KTFEGHT--SSVLRASFLTR-GAQIVSCGADGLVKLW 605 (882)
Q Consensus 564 d~~~~~~-----------~-----~~~~~h~--~~v~~~~~s~~-g~~l~s~~~dg~i~iw 605 (882)
|+.-..- + +-+.-|. ..+..+.|++. ..+|++.+.|| +.||
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 9853211 0 1122242 35666777764 34788888888 4444
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=6.4e-20 Score=172.35 Aligned_cols=308 Identities=16% Similarity=0.219 Sum_probs=217.1
Q ss_pred cceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCC
Q 002782 305 RGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 384 (882)
Q Consensus 305 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~ 384 (882)
.-...+-++|++..+++.+.++.+.+|+++..--.... ...........+.+.. + +.|+.+-
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-----~~~~~~~~~~~~r~~e--g---------~tvydy~-- 111 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-----DGPLNFSKHLSYRYQE--G---------ETVYDYC-- 111 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCC-----CCccccccceeEEecc--C---------CEEEEEE--
Confidence 34456779999999999999999999998754211100 0000000111111110 0 0111000
Q ss_pred CceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeec--ccc---cEEEEEEccCCCcEEEE
Q 002782 385 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG--HMG---AVGAVAFSKKLQNFLVS 459 (882)
Q Consensus 385 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~v~~s~~~~~~l~s 459 (882)
...|- .+ .-|+... +++.+.+.-|.+||.-+|+....+.+ |.. .-.+++|+|||. .| .
T Consensus 112 -------wYs~M---~s----~qP~t~l-~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-ql-f 174 (406)
T KOG2919|consen 112 -------WYSRM---KS----DQPSTNL-FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QL-F 174 (406)
T ss_pred -------eeecc---cc----CCCccce-eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eE-e
Confidence 00000 00 2244444 88889999999999999988777654 333 345799999998 34 4
Q ss_pred eeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC-cEEEEEcCCCcEEEEeCCCceeEEEEecccCc
Q 002782 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG 538 (882)
Q Consensus 460 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~ 538 (882)
++...+|++||+......... ......-..+..+-|.+++|+|-. +.+|+|+....+-||.-....++..+-+|.++
T Consensus 175 aGykrcirvFdt~RpGr~c~v--y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG 252 (406)
T KOG2919|consen 175 AGYKRCIRVFDTSRPGRDCPV--YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG 252 (406)
T ss_pred ecccceEEEeeccCCCCCCcc--hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC
Confidence 567789999998543211100 000011122335678899999954 59999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEeeC-CCcEEEEecCCC-ceeeEeecCcC-CEEEEEE--EeCCCEEEEeecCCeEEEEEcCC-Cee
Q 002782 539 IWSVEFSPVDQVVITASG-DKTIKIWSISDG-SCLKTFEGHTS-SVLRASF--LTRGAQIVSCGADGLVKLWTVRT-GEC 612 (882)
Q Consensus 539 v~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~-~~~~~~~~h~~-~v~~~~~--s~~g~~l~s~~~dg~i~iwd~~~-~~~ 612 (882)
|+.++|.++|+.|++|.. |-.|-.||++.. .++..+..|.+ .-.++.| .|+|++|++|+.||.|++||+++ |..
T Consensus 253 vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 253 VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 999999999999999875 778999999864 56777888876 4455666 58899999999999999999998 887
Q ss_pred EEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782 613 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (882)
Q Consensus 613 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~ 652 (882)
+..+..|.+.++.++++|--.+++|++.. ++|...++
T Consensus 333 ~sv~~~~sd~vNgvslnP~mpilatssGq---r~f~~~~d 369 (406)
T KOG2919|consen 333 VSVTGNYSDTVNGVSLNPIMPILATSSGQ---RIFKYPKD 369 (406)
T ss_pred ccccccccccccceecCcccceeeeccCc---eeecCCCc
Confidence 88888899999999999998889888865 55655544
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=6.5e-20 Score=181.62 Aligned_cols=211 Identities=15% Similarity=0.223 Sum_probs=182.2
Q ss_pred cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecc-cccEE
Q 002782 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVG 445 (882)
Q Consensus 367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~ 445 (882)
.+++.|+..+.|.|||+....+.+.+.+|...|+++. +...+.+ +++++..|.|.|..+.++.....+... ...|.
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~--YN~~Dey-iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVD--YNNTDEY-IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEE--ecCCcce-eEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 5788888889999999998889999999999999998 7777777 999999999999999988777666654 44566
Q ss_pred EEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC-CcEEEEEcCCCcEEEEeCC
Q 002782 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLP 524 (882)
Q Consensus 446 ~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~s~dg~i~iwd~~ 524 (882)
-+.++|..+.+|.+++.+|.|.+||+..... .......|..+...++|+|. ..+|++.+.|..|.+||..
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp---------~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSP---------IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCc---------ccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 8999999998999999999999999986532 34456789999999999994 5788899999999999998
Q ss_pred CceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEeCC
Q 002782 525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG 590 (882)
Q Consensus 525 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~g 590 (882)
.......+. ...+.++++|+++|.+|+.|...|.|..||++.- .++..+..|...|++++|-+.-
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 776666655 5678999999999999999999999999999864 5788899999999999997753
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=7.6e-21 Score=182.26 Aligned_cols=221 Identities=23% Similarity=0.408 Sum_probs=176.3
Q ss_pred eecccccEEEEEEccCCC-cEEEEeeCCCeEEEEecCCCCCC------CCCcccccchhhhhhcCCCeeEEEEcCCC-cE
Q 002782 437 GTGHMGAVGAVAFSKKLQ-NFLVSGSSDHTIKVWSFDGLSDD------AEQPMNLKAKAVVAAHGKDINSLAVAPND-SL 508 (882)
Q Consensus 437 ~~~~~~~v~~v~~s~~~~-~~l~s~~~dg~i~~wd~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~ 508 (882)
...|.+.+..+..++-++ .+.++-+..|.|++|++...-.. ........+..++.+|...-..++|||-. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 345777777777777643 35666688999999998653111 11113344667778899999999999932 34
Q ss_pred EEEEcCCCcEEEEeCCCcee---EEEEecccCceEEEEEcCCC-CEEEEeeCCCcEEEEecCCC---ceeeEeecCcCCE
Q 002782 509 VCTGSQDRTACVWRLPDLVS---VVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDG---SCLKTFEGHTSSV 581 (882)
Q Consensus 509 la~~s~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v 581 (882)
|++|.--+.|++|...++.- ...+.+|...|..++|||.. ..+++||.||+|+|||++.+ .++.+ ..|.+.|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDV 305 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDV 305 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCce
Confidence 77787778899999887633 23466799999999999964 58999999999999999988 45555 7899999
Q ss_pred EEEEEEeCCCEEEEeecCCeEEEEEcCC---CeeEEEeccCCCceEEEEEcCC-CCEEEEEeCCCCEEEEECCCHHHHHH
Q 002782 582 LRASFLTRGAQIVSCGADGLVKLWTVRT---GECIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLWHDSTAAEREE 657 (882)
Q Consensus 582 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~ 657 (882)
+-+.|+.+-.+|++|+.||.++|||+++ ++++.++..|..+|+++.|+|. ...|+++|.|..|.+||+..+...++
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 9999999888999999999999999974 6789999999999999999985 45788899999999999998766544
Q ss_pred H
Q 002782 658 A 658 (882)
Q Consensus 658 ~ 658 (882)
.
T Consensus 386 ~ 386 (440)
T KOG0302|consen 386 I 386 (440)
T ss_pred h
Confidence 3
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=9.7e-20 Score=178.77 Aligned_cols=239 Identities=21% Similarity=0.297 Sum_probs=187.4
Q ss_pred CCCcEEEEEEcCCcEEEEeCCCcee---------------------eeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782 364 EEEQYLAVATNIEQVQVYDLSSMSC---------------------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (882)
Q Consensus 364 ~~~~~l~~~~~~~~i~i~d~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 422 (882)
..++++|+|+.+..|.|||+.-... .....+|++.|..+. +...-+.+|++|+.|.+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls--~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS--WNRNFRNVLASGSADKT 267 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH--hccccceeEEecCCCce
Confidence 3568999999999999999852111 011236888888888 66666678999999999
Q ss_pred EEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEE
Q 002782 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (882)
Q Consensus 423 i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (882)
|.+||+.++++...+..|.+.|.++.|+|....+|++|+.|++|.+.|++.... ....-...+.|..++|
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~----------s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN----------SGKEWKFDGEVEKVAW 337 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc----------cCceEEeccceEEEEe
Confidence 999999999999999999999999999999999999999999999999985321 1111224567889999
Q ss_pred cCCC-cEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCC-CEEEEeeCCCcEEEEecCCCce--eeEeecC
Q 002782 503 APND-SLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSC--LKTFEGH 577 (882)
Q Consensus 503 s~~~-~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~--~~~~~~h 577 (882)
.|.. ..+++++.||+++-+|+++. +++.+++.|..+|.++++++.- .+++|++.|+.|++|++..-.. +..-.-.
T Consensus 338 ~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~ 417 (463)
T KOG0270|consen 338 DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK 417 (463)
T ss_pred cCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence 9865 56778889999999999876 8999999999999999999854 5789999999999999865433 2111111
Q ss_pred cCCEEEEEEEeCCC-EEEEeecCCeEEEEEcCCCeeEE
Q 002782 578 TSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGECIA 614 (882)
Q Consensus 578 ~~~v~~~~~s~~g~-~l~s~~~dg~i~iwd~~~~~~~~ 614 (882)
-+...|.++.|+-. .++.||..+.++|||+.++..+.
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 23344556666544 57788888899999998876543
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=2.8e-19 Score=173.56 Aligned_cols=161 Identities=24% Similarity=0.421 Sum_probs=139.8
Q ss_pred CCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 002782 59 GSDTITALALSPDDK-LLFSSGHSREIRVWDLSTL---------KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV 128 (882)
Q Consensus 59 ~~~~I~~l~~spd~~-~las~~~dg~i~iwd~~~~---------~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~v 128 (882)
...+|..+.|.++.. .||+|+.|..|++|-+..+ +.+..+..|...|+++.|+|+|..||+|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 356899999999877 9999999999999988543 234567789999999999999999999999999999
Q ss_pred EECC--------C--------CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceE
Q 002782 129 WDVD--------G--------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVT 192 (882)
Q Consensus 129 wd~~--------~--------~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~ 192 (882)
|-.. + ......+++|...|..++|+|++.. +++++.|..+++||+..|.....+..|...+.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~--l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF--LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce--eeeeeccceEEEEEeccceeEeeccccccccc
Confidence 9765 2 2344567799999999999998765 99999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEecCCce
Q 002782 193 SMAITSDGSTLISAGRDKVVNLWDLRDYS 221 (882)
Q Consensus 193 ~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 221 (882)
.++|.|-++++++-+.|...+.+.+...+
T Consensus 170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred eeecchhhhhhhhhccCcccceeeeeeee
Confidence 99999999999999999877776665433
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=5.6e-20 Score=182.06 Aligned_cols=288 Identities=16% Similarity=0.220 Sum_probs=214.5
Q ss_pred eCCCcEEEEECCCCeEEEEeecCC--CcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC--eE--EEEecCcccceEEE
Q 002782 121 GADRKVLVWDVDGGFCTHYFKGHK--GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--KC--VATLDKHFSRVTSM 194 (882)
Q Consensus 121 ~~dg~v~vwd~~~~~~~~~~~~h~--~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~--~~--~~~l~~h~~~v~~l 194 (882)
+....+++||+........+..|. ..+.+++|.... ...+++.+.|..|++|.-... +. +....+. .-.|+
T Consensus 9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv 85 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCV 85 (673)
T ss_pred ccCCceEEeecccccCccccccCCCCCcceeeeccccc-eEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHH
Confidence 334569999997655443443332 238888887652 244555667888999964332 11 1122222 33444
Q ss_pred EEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCC
Q 002782 195 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 274 (882)
Q Consensus 195 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 274 (882)
+......++++||..+.|++||++...+
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~kl~---------------------------------------------------- 113 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAKLI---------------------------------------------------- 113 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHHHH----------------------------------------------------
Confidence 4445557888999999999998863221
Q ss_pred eEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCC
Q 002782 275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354 (882)
Q Consensus 275 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (882)
.+.+.+|..
T Consensus 114 -----------------------------------------------------------------------hr~lkdh~s 122 (673)
T KOG4378|consen 114 -----------------------------------------------------------------------HRFLKDHQS 122 (673)
T ss_pred -----------------------------------------------------------------------hhhccCCcc
Confidence 133445677
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCC-CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE
Q 002782 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH-SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433 (882)
Q Consensus 355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 433 (882)
.|.++.|.. .+.++|.++..|.|.+..+.++.....+... ...+.-+. +++..+.+|.+++.+|.|.+||+....+
T Consensus 123 tvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~--ys~skr~lL~~asd~G~VtlwDv~g~sp 199 (673)
T KOG4378|consen 123 TVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR--YSPSKRFLLSIASDKGAVTLWDVQGMSP 199 (673)
T ss_pred eeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee--cccccceeeEeeccCCeEEEEeccCCCc
Confidence 788888876 6679999999999999999998887777655 34455777 8898999999999999999999998776
Q ss_pred Eee-eecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE
Q 002782 434 VGV-GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (882)
Q Consensus 434 ~~~-~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 512 (882)
+.. ...|..+...++|+|....++++.+.|+.|.+||..... .........+...++|+++|.+|+.|
T Consensus 200 ~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-----------s~~~l~y~~Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 200 IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-----------STDRLTYSHPLSTVAFSECGTYLCAG 268 (673)
T ss_pred ccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-----------ccceeeecCCcceeeecCCceEEEee
Confidence 654 457999999999999999899999999999999987432 11112244578999999999999999
Q ss_pred cCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCC
Q 002782 513 SQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD 548 (882)
Q Consensus 513 s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~ 548 (882)
+..|.|..||++.. .++.++..|...|++++|-|.-
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999999865 5677888899999999998754
No 168
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=9e-20 Score=178.98 Aligned_cols=283 Identities=22% Similarity=0.342 Sum_probs=208.6
Q ss_pred EEEEEEcCCCCEEEEEeCC---C--cEEEEECCCCeeEEEeecCC----CCEEEEEEcC-------CCCEEEEEeCCCcE
Q 002782 63 ITALALSPDDKLLFSSGHS---R--EIRVWDLSTLKCLRSWKGHD----GPAIGMACHP-------SGGLLATAGADRKV 126 (882)
Q Consensus 63 I~~l~~spd~~~las~~~d---g--~i~iwd~~~~~~~~~~~~h~----~~V~~l~fs~-------~~~~lasg~~dg~v 126 (882)
.--+.+-|+.++|+++-.+ . .|+||+-.... + +-.|. ..-.|++|.. .|+|+|.|+.|..|
T Consensus 128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n-l--YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~I 204 (463)
T KOG0270|consen 128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN-L--YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI 204 (463)
T ss_pred cccceeccCCcEEEEeeccCCceEEEEEEEcCCCcc-e--eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence 3456677877777776332 2 34555433211 1 11122 2334555532 46799999999999
Q ss_pred EEEECCCC---eEE------------------EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEec
Q 002782 127 LVWDVDGG---FCT------------------HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD 185 (882)
Q Consensus 127 ~vwd~~~~---~~~------------------~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~ 185 (882)
.|||+.-. .+. ..-.+|+..|..++|... .+.+||+||.|.+|++||+.+++|..++.
T Consensus 205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~lWD~~~g~p~~s~~ 283 (463)
T KOG0270|consen 205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVKLWDVDTGKPKSSIT 283 (463)
T ss_pred EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEEEEEcCCCCcceehh
Confidence 99998421 111 112368888999999877 45789999999999999999999999999
Q ss_pred CcccceEEEEEccC-CCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccc
Q 002782 186 KHFSRVTSMAITSD-GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264 (882)
Q Consensus 186 ~h~~~v~~l~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (882)
.|.+.|.++.|+|. ..+|++|+.|++|.+.|.+......
T Consensus 284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---------------------------------------- 323 (463)
T KOG0270|consen 284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---------------------------------------- 323 (463)
T ss_pred hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC----------------------------------------
Confidence 99999999999984 5789999999999999987411000
Q ss_pred eEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceee
Q 002782 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 344 (882)
Q Consensus 265 ~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 344 (882)
+-|.
T Consensus 324 ------------~~wk---------------------------------------------------------------- 327 (463)
T KOG0270|consen 324 ------------KEWK---------------------------------------------------------------- 327 (463)
T ss_pred ------------ceEE----------------------------------------------------------------
Confidence 0011
Q ss_pred eeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc-eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeE
Q 002782 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (882)
Q Consensus 345 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 423 (882)
..+.|-.++|.+.....+.+++.+|.++-+|+++. +++..+..|.++|.+++ +++....++++++.|+.|
T Consensus 328 -------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~--~n~~~p~~l~t~s~d~~V 398 (463)
T KOG0270|consen 328 -------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS--VNIQTPGLLSTASTDKVV 398 (463)
T ss_pred -------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE--ecCCCCcceeeccccceE
Confidence 12455666777778889999999999999999865 88999999999999999 777766779999999999
Q ss_pred EEEeCCCceE--EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCC
Q 002782 424 RLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (882)
Q Consensus 424 ~iwd~~~~~~--~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~ 474 (882)
.+|++..... +..-...-+...|.++.|+-..+++.|+..+.+++||+.+.
T Consensus 399 klw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 399 KLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred EEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 9999875432 22222233457788888888888999999999999998764
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=7.5e-20 Score=167.12 Aligned_cols=306 Identities=20% Similarity=0.335 Sum_probs=205.1
Q ss_pred EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEec-CcccceEEEEEccCCCEEEEEeCCCeEEE
Q 002782 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-KHFSRVTSMAITSDGSTLISAGRDKVVNL 214 (882)
Q Consensus 136 ~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 214 (882)
+...+++|.+.|+++.|-.++. |++|..-|.|++|++.+.+....++ .|...|+.+.-.|+ ..|.+-++|+.+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 4567789999999999987643 9999999999999999999988888 56678999999887 57889999999999
Q ss_pred EecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCce
Q 002782 215 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 294 (882)
Q Consensus 215 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~ 294 (882)
|++.....+..... .++.+.|
T Consensus 82 w~ia~s~~i~i~Si--~~nslgF--------------------------------------------------------- 102 (323)
T KOG0322|consen 82 WTIAYSAFISIHSI--VVNSLGF--------------------------------------------------------- 102 (323)
T ss_pred EEccCcceEEEeee--ecccccc---------------------------------------------------------
Confidence 99876432221110 0000000
Q ss_pred eeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEc
Q 002782 295 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN 374 (882)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 374 (882)
...++.+..... ..+..|..... +..+.--+..
T Consensus 103 -------------CrfSl~~~~k~~------eqll~yp~rgs----------------------------de~h~~D~g~ 135 (323)
T KOG0322|consen 103 -------------CRFSLVKKPKNS------EQLLEYPSRGS----------------------------DETHKQDGGD 135 (323)
T ss_pred -------------ccceeccCCCcc------hhheecCCccc----------------------------chhhhhccCc
Confidence 000000100000 00000000000 0000000000
Q ss_pred CCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEE----------eeeecccccE
Q 002782 375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV----------GVGTGHMGAV 444 (882)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~v 444 (882)
.-++++-+-. -.+..+.+.|..+.+.-....++++|..+|.+.+||+.++..+ .....|..+|
T Consensus 136 ~tqv~i~dd~-------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv 208 (323)
T KOG0322|consen 136 TTQVQIADDS-------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV 208 (323)
T ss_pred cceeEccCch-------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcc
Confidence 0111111111 1123455666653333344556888999999999999997433 2334689999
Q ss_pred EEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC
Q 002782 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (882)
Q Consensus 445 ~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~ 524 (882)
.++.+.+.-. .=++|+.+..+..|+++..... ........-....+..+.+-||++.+|+++.|+.|+||..+
T Consensus 209 lsldyas~~~-rGisgga~dkl~~~Sl~~s~gs------lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 209 LSLDYASSCD-RGISGGADDKLVMYSLNHSTGS------LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred eeeeechhhc-CCcCCCccccceeeeeccccCc------ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence 9999986533 3478888888999998754211 11112222234568889999999999999999999999999
Q ss_pred CceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEec
Q 002782 525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (882)
Q Consensus 525 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~ 565 (882)
++.++..++-|...|.+++|+|+..++|+++.|++|.+|++
T Consensus 282 tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999999999986
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=4.8e-18 Score=165.06 Aligned_cols=160 Identities=22% Similarity=0.372 Sum_probs=136.4
Q ss_pred cccccccCCceEEccCCC-EEEEEeCC-eEEEEEcCCCc---------eeeeecCCCccEEEEEEcCCCCEEEEEeCCCc
Q 002782 15 VLQQFYGGGPLVVSSDGS-FIACACGE-SINIVDLSNAS---------IKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83 (882)
Q Consensus 15 ~~~~~y~g~~va~s~dg~-~la~~~~~-~I~i~d~~~~~---------~~~~l~~~~~~I~~l~~spd~~~las~~~dg~ 83 (882)
..+|+|. +.|.+++. .+|+++++ .|+||-++.++ .+..|..|...|+++.|+|+|..||+|+.+|.
T Consensus 12 ~~~pv~s---~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 12 DHEPVYS---VDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE 88 (434)
T ss_pred CCCceEE---EEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce
Confidence 4556776 88887776 89998887 89999886432 34567889999999999999999999999999
Q ss_pred EEEEECC--------C--------CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcE
Q 002782 84 IRVWDLS--------T--------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVV 147 (882)
Q Consensus 84 i~iwd~~--------~--------~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V 147 (882)
|.+|-.. + ....+.+.+|...|..++|+|++.++++++.|..+++||+..|.....+.+|..-|
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYV 168 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccc
Confidence 9999765 2 23456678899999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCccEEEEEeCCCcEEEEECCCCe
Q 002782 148 SSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (882)
Q Consensus 148 ~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~ 179 (882)
..++|.|-.++ +++-+.|...+.+++...+
T Consensus 169 qgvawDpl~qy--v~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 169 QGVAWDPLNQY--VASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred ceeecchhhhh--hhhhccCcccceeeeeeee
Confidence 99999997665 8888888877777665444
No 171
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=2.2e-20 Score=196.22 Aligned_cols=283 Identities=20% Similarity=0.322 Sum_probs=220.4
Q ss_pred eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (882)
Q Consensus 53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~ 132 (882)
++.+.||...|.|.+|...|.++++|+.|..++||..+++.++.+..||.+.|+.++.+.++.++|+++.|..|+||.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEe-----cCcccceEEEEEccCCCEEEEEe
Q 002782 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-----DKHFSRVTSMAITSDGSTLISAG 207 (882)
Q Consensus 133 ~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l-----~~h~~~v~~l~~s~~~~~l~s~~ 207 (882)
.+.++..+.||++.|++++|+| ..+.+.||++++||.. ...+... ......+.++.|...+..+.+++
T Consensus 263 ~~~pvsvLrghtgavtaiafsP------~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSP------RASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred CCchHHHHhccccceeeeccCc------cccCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccccccccc
Confidence 9999999999999999999999 4588999999999987 1111111 01123456666666777777777
Q ss_pred CCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceee
Q 002782 208 RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (882)
Q Consensus 208 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~ 287 (882)
.|+.-..|.+......
T Consensus 336 ~d~ea~n~e~~~l~~~---------------------------------------------------------------- 351 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWR---------------------------------------------------------------- 351 (1113)
T ss_pred CCcccccchhhHhhhh----------------------------------------------------------------
Confidence 7776666654311000
Q ss_pred eecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCc
Q 002782 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (882)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 367 (882)
...+. -+.+.++-..
T Consensus 352 ----------------------------~~~li-------------------------------------f~t~ssd~~~ 366 (1113)
T KOG0644|consen 352 ----------------------------SNLLI-------------------------------------FVTRSSDLSS 366 (1113)
T ss_pred ----------------------------ccceE-------------------------------------EEeccccccc
Confidence 00000 0000111223
Q ss_pred EEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEE
Q 002782 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (882)
Q Consensus 368 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v 447 (882)
+.+++-++-.+.+|++.++.....+.+|.+.+..+. ++|-+..+..+++.||...|||+-.|..+.......+.+...
T Consensus 367 ~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd--~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~ 444 (1113)
T KOG0644|consen 367 IVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD--VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDG 444 (1113)
T ss_pred cceeeeeeeEeeeeecccchhhhhhcccccceeeee--ecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeecc
Confidence 455555667889999999999999999999999999 888888878889999999999999988877765445677788
Q ss_pred EEccCCCcEEEEeeCCCeEEEEecCCC
Q 002782 448 AFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (882)
Q Consensus 448 ~~s~~~~~~l~s~~~dg~i~~wd~~~~ 474 (882)
+||++|.. ++....-|.+.+......
T Consensus 445 kFSqdgts-~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 445 KFSQDGTS-IALSDDHGQLYILGTGQS 470 (1113)
T ss_pred ccCCCCce-EecCCCCCceEEeccCCC
Confidence 99999884 555566688888766543
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=9.1e-20 Score=199.80 Aligned_cols=246 Identities=22% Similarity=0.357 Sum_probs=200.9
Q ss_pred ceEEeeeeeecCCCE---EEEEeecCCeEEEEeCCCc------eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEE
Q 002782 398 IVLCLDTCALSSGKI---LIVTGSKDNSVRLWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV 468 (882)
Q Consensus 398 ~v~~~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~ 468 (882)
....++ |.+.+.. +++.|..||.|.+||...- ..+.....|.+.|..+.|++...++|++|+.||.|.|
T Consensus 66 rF~kL~--W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 66 RFNKLA--WGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cceeee--ecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 455666 4343333 5899999999999997652 3455677899999999999999889999999999999
Q ss_pred EecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC-CcEEEEEcCCCcEEEEeCCCceeEEEEecccC--ceEEEEEc
Q 002782 469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--GIWSVEFS 545 (882)
Q Consensus 469 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~s 545 (882)
||+.......... .......|.+++|+.. ...||+++.+|.+.|||++..+++..+..|.. .+..++|+
T Consensus 144 WDlnn~~tP~~~~--------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~Wh 215 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG--------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWH 215 (1049)
T ss_pred eccCCcCCCCCCC--------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeC
Confidence 9998743211111 2334568999999874 56889999999999999999988887776554 47899999
Q ss_pred CCC-CEEEEeeCCC---cEEEEecCCC-ceeeEeecCcCCEEEEEEEeCC-CEEEEeecCCeEEEEEcCCCeeEEEeccC
Q 002782 546 PVD-QVVITASGDK---TIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKH 619 (882)
Q Consensus 546 ~~~-~~l~s~~~d~---~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h 619 (882)
|++ ..|++++.|. .|.+||++.- ..++.+++|...|.++.|++.+ ++|+|++.|+.|.+|+..+|+.+..+...
T Consensus 216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~ 295 (1049)
T KOG0307|consen 216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ 295 (1049)
T ss_pred CCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC
Confidence 986 3566666553 5999998764 5788899999999999999866 89999999999999999999999999988
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCCEEEEECCCHH
Q 002782 620 EDKIWALAVGKKTE-MFATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 620 ~~~v~~l~~s~~~~-~l~s~~~dg~i~iw~~~~~~ 653 (882)
.+.+..+.|.|... .|+.++-||.|.|+.+....
T Consensus 296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 88999999999877 77888999999999887654
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=6.5e-18 Score=158.99 Aligned_cols=238 Identities=16% Similarity=0.262 Sum_probs=180.4
Q ss_pred CCCcEEEEEEcCCcEEEEeCCCceeeeeeeC--CCcceE-EeeeeeecCCCEEEEEeecCCeEEEEeC-CCceEEee---
Q 002782 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--HSEIVL-CLDTCALSSGKILIVTGSKDNSVRLWDS-ESRCCVGV--- 436 (882)
Q Consensus 364 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~v~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~--- 436 (882)
++..++++.+.+.-|.+||.-+++....+.+ |.+.++ +...+|+|+|.. |++| ....|++||+ +.|+....
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq-lfaG-ykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ-LFAG-YKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe-Eeec-ccceEEEeeccCCCCCCcchhh
Confidence 5677899999999999999999987665543 444332 233349999998 6655 4679999998 44432211
Q ss_pred ----eecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE
Q 002782 437 ----GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (882)
Q Consensus 437 ----~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 512 (882)
-.+..+-+.+++|+|.....++.|+...++-++.-.... +...+.+|.+.|+.+.|.++|+.|.+|
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~----------pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR----------PLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC----------ceeeecccCCCeeeEEeccCcCeeccc
Confidence 123467899999999888789999999999888766442 666777999999999999999999998
Q ss_pred cC-CCcEEEEeCCCc-eeEEEEecccC-ceE--EEEEcCCCCEEEEeeCCCcEEEEecCC-CceeeEeecCcCCEEEEEE
Q 002782 513 SQ-DRTACVWRLPDL-VSVVTFRGHKR-GIW--SVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASF 586 (882)
Q Consensus 513 s~-dg~i~iwd~~~~-~~~~~~~~h~~-~v~--~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~ 586 (882)
.. |-.|..||++.. .++..+..|.. .=. -....|++++|++|+.||.|++||+++ |..+..+..|...++.+++
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 75 568999999754 55566666654 222 345568999999999999999999998 7778888889999999999
Q ss_pred EeCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782 587 LTRGAQIVSCGADGLVKLWTVRTGECI 613 (882)
Q Consensus 587 s~~g~~l~s~~~dg~i~iwd~~~~~~~ 613 (882)
.|--..+++++.......=+-++|+..
T Consensus 349 nP~mpilatssGqr~f~~~~dD~ge~~ 375 (406)
T KOG2919|consen 349 NPIMPILATSSGQRIFKYPKDDNGELE 375 (406)
T ss_pred CcccceeeeccCceeecCCCccccccc
Confidence 999778888776543333333444444
No 174
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.7e-18 Score=172.40 Aligned_cols=125 Identities=27% Similarity=0.463 Sum_probs=111.9
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcEEEE
Q 002782 95 LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173 (882)
Q Consensus 95 ~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vw 173 (882)
-..+.||++.|.++.|+.+|.+|++|+.|-.+.|||.-..+.++.+. ||.+.|.++.|.|..+..++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 45678999999999999999999999999999999999888888775 89999999999999888999999999999999
Q ss_pred ECCCC----------eEEEEecCcccceEEEEEccCC-CEEEEEeCCCeEEEEecCC
Q 002782 174 DLLAK----------KCVATLDKHFSRVTSMAITSDG-STLISAGRDKVVNLWDLRD 219 (882)
Q Consensus 174 d~~~~----------~~~~~l~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~vwd~~~ 219 (882)
|+... ........|...|..++..|++ ..+.+++.||+++.+|++.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 99852 2444567789999999999988 7889999999999999875
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=8.2e-18 Score=184.65 Aligned_cols=245 Identities=18% Similarity=0.325 Sum_probs=196.9
Q ss_pred ceEEEEEeCCCCc---EEEEEEcCCcEEEEeCCCc------eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEE
Q 002782 355 EILDLKFLGEEEQ---YLAVATNIEQVQVYDLSSM------SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (882)
Q Consensus 355 ~i~~~~~~~~~~~---~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (882)
....++|.+.... +++.|..||.|.+||...- ..+.....|.+.|..++ |++....++++|+.||.|.|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLD--fN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLD--FNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeee--ccccCCceeeccCCCCcEEE
Confidence 3456666554433 6899999999999998652 23446678999999999 88988877999999999999
Q ss_pred EeCCCceEEeee--ecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcC--CCeeEEE
Q 002782 426 WDSESRCCVGVG--TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG--KDINSLA 501 (882)
Q Consensus 426 wd~~~~~~~~~~--~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~ 501 (882)
||+.+-+.-... ....+.|.+++|+..-.++|++++.+|.+.+||++.... ...+..+. ..+..++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p----------ii~ls~~~~~~~~S~l~ 213 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP----------IIKLSDTPGRMHCSVLA 213 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc----------ccccccCCCccceeeee
Confidence 999874433222 235678999999998888999999999999999986531 11111122 3578999
Q ss_pred EcCCC-cEEEEEcCCC---cEEEEeCCCc-eeEEEEecccCceEEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeEee
Q 002782 502 VAPND-SLVCTGSQDR---TACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFE 575 (882)
Q Consensus 502 ~s~~~-~~la~~s~dg---~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~ 575 (882)
|+|++ ..+++++.|. .|.+||++.. .+++.+.+|..+|.++.|++.+ .+|++++.|+.|.+|+..+++.+..+.
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 99986 5566666554 5999998754 5677888999999999999976 899999999999999999999999999
Q ss_pred cCcCCEEEEEEEeCCC-EEEEeecCCeEEEEEcCCCe
Q 002782 576 GHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGE 611 (882)
Q Consensus 576 ~h~~~v~~~~~s~~g~-~l~s~~~dg~i~iwd~~~~~ 611 (882)
...+.+..+.|+|... .++.++-||.|-|+.+..+.
T Consensus 294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8889999999999766 77888889999999987654
No 176
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=1.2e-15 Score=153.08 Aligned_cols=596 Identities=13% Similarity=0.132 Sum_probs=330.8
Q ss_pred ceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccE-EEEEEcC-------CCCEEEEEeCCCcEEEEECCCCeeE
Q 002782 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTI-TALALSP-------DDKLLFSSGHSREIRVWDLSTLKCL 95 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I-~~l~~sp-------d~~~las~~~dg~i~iwd~~~~~~~ 95 (882)
++.++.....+.++.+..+.+|+-.+...+..+.-..+-| +.+-.-| ....++.++.||.+.+-+ ..++.-
T Consensus 19 ~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~rVE 97 (737)
T KOG1524|consen 19 CVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSARVE 97 (737)
T ss_pred eecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccchhh
Confidence 5778888877777777777777654443332222211111 2222211 235688889999999987 577888
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEEC
Q 002782 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (882)
Q Consensus 96 ~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~ 175 (882)
+...+|.+.|.+-.|+|||.-|++++.||.|++|.-. |-.-.++-....+|.|++|.|+++. ++++. .+.+.+=.+
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~-vl~c~--g~h~~IKpL 173 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNS-IVFCQ--GGHISIKPL 173 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCc-eEEec--CCeEEEeec
Confidence 8899999999999999999999999999999999954 3333344456778999999999764 44443 355777777
Q ss_pred CCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhh
Q 002782 176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (882)
Q Consensus 176 ~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (882)
.....+-..+.|.+-|.++.|++....+++||.|-..++||..........+..-++.++.+.|+.
T Consensus 174 ~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~-------------- 239 (737)
T KOG1524|consen 174 AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEK-------------- 239 (737)
T ss_pred ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeecccc--------------
Confidence 777777788999999999999999999999999999999998776666666677788888888873
Q ss_pred hhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecc
Q 002782 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (882)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 335 (882)
.+..+.-.++|+-..+ ...+..+++++++.++.+++..|.+.+-...+
T Consensus 240 -----------~~~v~S~nt~R~~~p~---------------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie 287 (737)
T KOG1524|consen 240 -----------DYLLWSYNTARFSSPR---------------------VGSIFNLSWSADGTQATCGTSTGQLIVAYAIE 287 (737)
T ss_pred -----------ceeeeeeeeeeecCCC---------------------ccceEEEEEcCCCceeeccccCceEEEeeeeh
Confidence 2223333344432222 25678899999999999999999887754432
Q ss_pred cccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEE
Q 002782 336 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 415 (882)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 415 (882)
..- . .++.=++......|.+-|+.++.+ ..+.. ...+.... -.-.+ ++
T Consensus 288 q~l-----------~--------------~~n~~~t~~~r~~I~vrdV~~~v~-d~LE~-p~rv~k~s----L~Y~h-Lv 335 (737)
T KOG1524|consen 288 QQL-----------V--------------SGNLKATSKSRKSITVRDVATGVQ-DILEF-PQRVVKFS----LGYGH-LV 335 (737)
T ss_pred hhh-----------h--------------hccceeEeeccceEEeehhhhhHH-HHhhC-ccceeeee----eceeE-EE
Confidence 210 0 122223334445566666665544 22222 22233222 11112 23
Q ss_pred EeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC
Q 002782 416 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (882)
Q Consensus 416 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (882)
++. ...+++|.-........+.+....+.-+.-.. +.+++. ...++.+|........... .+ .... .
T Consensus 336 vaT-s~qvyiys~knwntpiiidgre~tr~lieq~e--k~fli~--dgsSi~lytyegR~~~np~-~P--g~~~-----d 402 (737)
T KOG1524|consen 336 VAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQGE--KYFLIL--DGSSIWLYTYEGRLHLNPR-YP--GSQI-----D 402 (737)
T ss_pred EEe-ccEEEEEecCCccCcEEEeccccchhHhhhhh--hheEEe--cCcEEEEEEecCceecCCC-CC--Cccc-----c
Confidence 222 23566765444322222332222221111111 112222 2234455544322100000 00 0000 0
Q ss_pred CeeEEEEcCCCcEEEEE--cCCCcEEEEeC-CCceeEEE--EecccCceEEEEEc----CCCCEEEEeeCCCcEEEEecC
Q 002782 496 DINSLAVAPNDSLVCTG--SQDRTACVWRL-PDLVSVVT--FRGHKRGIWSVEFS----PVDQVVITASGDKTIKIWSIS 566 (882)
Q Consensus 496 ~i~~~~~s~~~~~la~~--s~dg~i~iwd~-~~~~~~~~--~~~h~~~v~~l~~s----~~~~~l~s~~~d~~i~iwd~~ 566 (882)
..+.-.+|-....|+.- .....+.+||. .+++.... +-.|...|..++.. ++++.++.-..++.+.|=.++
T Consensus 403 lL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvK 482 (737)
T KOG1524|consen 403 LLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVK 482 (737)
T ss_pred cccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeeh
Confidence 01111122222234432 23345778887 66655432 22366666666654 355667777777777776665
Q ss_pred CCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE------EEe-cc----CCCceEEEEEcCCCCEE
Q 002782 567 DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI------ATY-DK----HEDKIWALAVGKKTEMF 635 (882)
Q Consensus 567 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~------~~~-~~----h~~~v~~l~~s~~~~~l 635 (882)
....-..+..-..-|..++|+.. .-+++|-.|+.+.||-..+--.+ .++ .. ......-+.| -|+.+
T Consensus 483 rfgkee~I~KiGTmVhtLawndt-tNiLcglqDt~fsVWy~pn~vyvDrdiLpkTlierdt~efgKnpqIvsF--vgNqv 559 (737)
T KOG1524|consen 483 RFGKEEEIYKIGTMVHTLAWNDT-TNILCGLQDTCFSVWYYPNEVYVDRDILPKTLIERDTTEFGKNPQIVSF--VGNQV 559 (737)
T ss_pred hcCchhhhhhhhhhhhhhhhccc-cceeeeeccceEEEEEcCCcceecccccchhheecchhhccCCcceeee--eccEE
Confidence 43221222212334666888754 45667888999999977542111 011 00 0001111122 45555
Q ss_pred EEEeCCCCEEEEECCCHHHHHHHhhhhHHHHhccchHHHhhhccchHHHHHHHhhcCCchhHHHHHHHHHhcchhHHHHH
Q 002782 636 ATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIE 715 (882)
Q Consensus 636 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 715 (882)
..--.||.+.--.+..-.. -+-+++...++..|++++.-..+. ++...+..+.-........+
T Consensus 560 tirrsdG~LlpisV~py~~----------------iL~e~~sssKWeqavRLCrfv~eq-TMWAtlAa~Av~~~~m~~~E 622 (737)
T KOG1524|consen 560 TIRRSDGALLPISVNPYPE----------------ILHEYLSSSKWEQAVRLCRFVQEQ-TMWATLAAVAVRKHQMQISE 622 (737)
T ss_pred EEEeccCceEeeeccccHH----------------HHHHHhccchHHHHHHHHHhccch-HHHHHHHHHHHhhccccHHH
Confidence 5555666654444332211 122345556788888887654432 33444443332211111223
Q ss_pred HHHhccCHHHHHHHHHHHHH
Q 002782 716 KALHALGKEEIRQLLEYVRE 735 (882)
Q Consensus 716 ~~~~~l~~~~~~~ll~~~~~ 735 (882)
.+-..+.+.+...++..+..
T Consensus 623 iAYaA~~~idKVsyin~iK~ 642 (737)
T KOG1524|consen 623 IAYAAALQIDKVSYINHIKA 642 (737)
T ss_pred HHHHHhhchhhHHHHHHHhc
Confidence 33333334444455555543
No 177
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=161.07 Aligned_cols=300 Identities=19% Similarity=0.261 Sum_probs=213.8
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCc
Q 002782 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG------GFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (882)
Q Consensus 97 ~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~------~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~ 169 (882)
.+.+|.+.|.++.||.++++||+|+.|..++||+++. .+++.... .|...|.|++|.... ..+++|..+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N--~~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN--RFLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC--eeEecCCCcce
Confidence 3567999999999999999999999999999999853 34444333 366899999998754 45999999999
Q ss_pred EEEEECCCCeEEEEecC--cccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccc
Q 002782 170 VRVWDLLAKKCVATLDK--HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF 247 (882)
Q Consensus 170 I~vwd~~~~~~~~~l~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (882)
|...|+++.+.+..+.. ..+.|..+..+|..+.|++.+.+|.|.+||.+..... +.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~--------~~-------------- 186 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP--------IS-------------- 186 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC--------Cc--------------
Confidence 99999999998877743 3458999999999999999999999999998753210 00
Q ss_pred cccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCe
Q 002782 248 LSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQ 327 (882)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 327 (882)
+++..
T Consensus 187 -----------------------------------------------------------------------~~~~A---- 191 (609)
T KOG4227|consen 187 -----------------------------------------------------------------------LVLPA---- 191 (609)
T ss_pred -----------------------------------------------------------------------eeeec----
Confidence 00000
Q ss_pred EEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeee-e------eeCCCcceE
Q 002782 328 LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-V------LAGHSEIVL 400 (882)
Q Consensus 328 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~------~~~~~~~v~ 400 (882)
.+......+.|.|....++++++..+-+.+||........ . ++.....-.
T Consensus 192 -----------------------N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 192 -----------------------NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWM 248 (609)
T ss_pred -----------------------CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhh
Confidence 0112234566777788889999999999999986543321 1 111111112
Q ss_pred EeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecc-------cccEEEEEEccCCCcEEEEeeCCCeEEEEecCC
Q 002782 401 CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-------MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (882)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~ 473 (882)
+.. |+|.|.. +.+--....-.+||+.+.++...-..| ...+.+++|..+. -+++|+.+-.|.+|.++.
T Consensus 249 ~~~--~~~~G~Q-~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 249 GSL--WSPSGNQ-FMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred hee--eCCCCCe-ehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCC
Confidence 222 8899988 444444444556787764443222222 2357778887764 389999999999999875
Q ss_pred CCCCCC-------------CcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC
Q 002782 474 LSDDAE-------------QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (882)
Q Consensus 474 ~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~ 523 (882)
.....- .........++.+|..-++.+.|+|...+|++.+..+.++||.-
T Consensus 324 ~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 324 ANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 422111 11222345667899999999999999999999999999999974
No 178
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.7e-16 Score=164.29 Aligned_cols=551 Identities=16% Similarity=0.204 Sum_probs=346.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------EEEEeecCCCcEEEEEEecCCCccEEEEEeC
Q 002782 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF---------------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166 (882)
Q Consensus 102 ~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~---------------~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~ 166 (882)
.....|++|+....|+|+||.||.++|-.+.+.. .-+++.||++.|..+.|..+.+. |-+...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK--LTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK--LTTSDT 91 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc--ccccCC
Confidence 3567899999999999999999999999885431 22467799999999999987655 899999
Q ss_pred CCcEEEEECCCCeEEEEe--cCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCc
Q 002782 167 DATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF 244 (882)
Q Consensus 167 dg~I~vwd~~~~~~~~~l--~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (882)
+|.|.||-+-.+.-...+ ....+.|.+++|+.||..+.....||.|.+=.++..
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN------------------------ 147 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN------------------------ 147 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc------------------------
Confidence 999999998777644433 234467999999999999999999997766444322
Q ss_pred ccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEe
Q 002782 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 324 (882)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 324 (882)
|+|.-+-. ......+.++++...++....
T Consensus 148 --------------------------------RIwgKeLk-------------------g~~l~hv~ws~D~~~~Lf~~a 176 (1189)
T KOG2041|consen 148 --------------------------------RIWGKELK-------------------GQLLAHVLWSEDLEQALFKKA 176 (1189)
T ss_pred --------------------------------eecchhcc-------------------hheccceeecccHHHHHhhhc
Confidence 23322111 012235566777777777888
Q ss_pred CCeEEEEEecccccccceeeee----eeecccCCceEEEEE-------eCCCCcEEEEEEcCCcEEEEeCCCceeeeeee
Q 002782 325 DQQLLLYTTVEVPEKKMELILS----KRLVGYNEEILDLKF-------LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA 393 (882)
Q Consensus 325 ~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~-------~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 393 (882)
+|...+|+...+-..+...... .........+..+.| .+++...++++..+|.+.+..-.+......+.
T Consensus 177 nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d 256 (1189)
T KOG2041|consen 177 NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD 256 (1189)
T ss_pred CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe
Confidence 8888888877654333333222 222222334555555 45788999999999999988765544443333
Q ss_pred CCCcceEEeeeeeecCCCEEEEEeecC---------CeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEee---
Q 002782 394 GHSEIVLCLDTCALSSGKILIVTGSKD---------NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--- 461 (882)
Q Consensus 394 ~~~~~v~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~--- 461 (882)
.. -.+.... |+++|.. ++.++.+ +.|.++.. -|..+..++.....|++++|-..|-.+.++..
T Consensus 257 tg-m~~vgak--Wnh~G~v-LAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfi 331 (1189)
T KOG2041|consen 257 TG-MKIVGAK--WNHNGAV-LAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFI 331 (1189)
T ss_pred cc-cEeecce--ecCCCcE-EEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecceE
Confidence 22 4455555 8888887 6665533 24444442 35566777777788888888655432111000
Q ss_pred ---------------------------CCCeEEEEecCCCCCCCCCcccccchhhhhhc--------------------C
Q 002782 462 ---------------------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH--------------------G 494 (882)
Q Consensus 462 ---------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 494 (882)
....|.+||..+...................| .
T Consensus 332 yfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~ 411 (1189)
T KOG2041|consen 332 YFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR 411 (1189)
T ss_pred EEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcc
Confidence 12345667765432111000000000000000 0
Q ss_pred C--------------------CeeEEEEcCCCcEEEEEcCCCcEEEEeCCCcee--------------------------
Q 002782 495 K--------------------DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS-------------------------- 528 (882)
Q Consensus 495 ~--------------------~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~-------------------------- 528 (882)
+ +|.-.-..-++..++.+|.+. +.+|.....+.
T Consensus 412 ~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~-~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d 490 (1189)
T KOG2041|consen 412 SRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEER-YFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQD 490 (1189)
T ss_pred cceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEecccc-EEEEEEeccchhhhhhhhhhcccccccCCCCccchhh
Confidence 0 111111222566677777654 67775421110
Q ss_pred ------EEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeE
Q 002782 529 ------VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602 (882)
Q Consensus 529 ------~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i 602 (882)
..++.|...+|.+++.+ +++|..+-..|.|.-|++.+......+. -...+.++++..+...++....-|.+
T Consensus 491 ~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~ 567 (1189)
T KOG2041|consen 491 RTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVV 567 (1189)
T ss_pred ceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhcee
Confidence 13344567788888887 7899999999999999998887766654 45678889999888899988888999
Q ss_pred EEEEcC---CCeeEE-EeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHHHH--------------------H
Q 002782 603 KLWTVR---TGECIA-TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE--------------------A 658 (882)
Q Consensus 603 ~iwd~~---~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~--------------------~ 658 (882)
.+.|+. +|+.+. .+......||.+.|..|...|+.-.....+.|++-.++++... .
T Consensus 568 tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndpeEp~s~sGyIc~FedLeitsVlld~I 647 (1189)
T KOG2041|consen 568 TFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPEEPSSVSGYICLFEDLEITSVLLDKI 647 (1189)
T ss_pred eeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcCccccccccceEEEeeceEEEEEEHhhH
Confidence 998886 455444 4444567899999988876555444444444444333222111 0
Q ss_pred hhhh---------HHHHhccchHHHhhhccchHHHHHHHhhcCCchhHHHHHHHHHhcchhHHHHHHHHhccCHHHHHHH
Q 002782 659 FRKE---------EEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQL 729 (882)
Q Consensus 659 ~~~~---------~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l 729 (882)
.... +-++...++..+++......+|++.+.+..+| ++..++.+.....-....-++++.++.+..-.+|
T Consensus 648 l~~pE~pnk~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHp-rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~ 726 (1189)
T KOG2041|consen 648 LLTPENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHP-RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL 726 (1189)
T ss_pred hcCcCCCCcceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCch-HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH
Confidence 0000 01112234566777788888999988877776 4566665544333334456778888888888888
Q ss_pred HHHHHHHhcC
Q 002782 730 LEYVREWNTK 739 (882)
Q Consensus 730 l~~~~~~~~~ 739 (882)
.++++.-..+
T Consensus 727 vkrl~~i~s~ 736 (1189)
T KOG2041|consen 727 VKRLRTIHSK 736 (1189)
T ss_pred HHHhhhhhhH
Confidence 8877665543
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=5.8e-17 Score=173.88 Aligned_cols=280 Identities=17% Similarity=0.188 Sum_probs=202.6
Q ss_pred CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeE--EE----EecCcccceEEEEE
Q 002782 123 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC--VA----TLDKHFSRVTSMAI 196 (882)
Q Consensus 123 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~--~~----~l~~h~~~v~~l~~ 196 (882)
++.+.||++.........-.....|.++.|+|.. ..+++.|+.+|.|.+||+..+.. .. ....|..+++.+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 3579999998763333333367889999999984 46899999999999999987664 22 22468889999999
Q ss_pred ccCCC--EEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCC
Q 002782 197 TSDGS--TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 274 (882)
Q Consensus 197 s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 274 (882)
..+.. -+++++.||.|..|+++...........+...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~----------------------------------------- 338 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK----------------------------------------- 338 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhccccccc-----------------------------------------
Confidence 76544 49999999999999776433211000000000
Q ss_pred eEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCC
Q 002782 275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354 (882)
Q Consensus 275 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (882)
....-.....
T Consensus 339 ----------------------------------------------------------------------~~~~~~~~~~ 348 (555)
T KOG1587|consen 339 ----------------------------------------------------------------------HKGQQSSKAV 348 (555)
T ss_pred ----------------------------------------------------------------------cccccccccc
Confidence 0000001123
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCce--------eeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEE
Q 002782 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (882)
Q Consensus 355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 426 (882)
.+..+.|.+.+...+++|+..|.|..-+..... ....+..|.++|.++. ++|-+..++.+++ |.+++||
T Consensus 349 ~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~--~nPF~~k~fls~g-DW~vriW 425 (555)
T KOG1587|consen 349 GATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVS--RNPFYPKNFLSVG-DWTVRIW 425 (555)
T ss_pred ceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeee--cCCCccceeeeec-cceeEec
Confidence 457778888888888888888888874433221 2335567889999999 8888877566666 9999999
Q ss_pred eCC-CceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC
Q 002782 427 DSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (882)
Q Consensus 427 d~~-~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (882)
... ...++..+..+...+++++|||....+++++..||.+.+||+......+ ......+....+.+.|+++
T Consensus 426 s~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P--------v~s~~~~~~~l~~~~~s~~ 497 (555)
T KOG1587|consen 426 SEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP--------VLSQKVCSPALTRVRWSPN 497 (555)
T ss_pred cccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC--------cccccccccccceeecCCC
Confidence 988 6677777778888899999999999899999999999999998653222 2222223556778899999
Q ss_pred CcEEEEEcCCCcEEEEeCCC
Q 002782 506 DSLVCTGSQDRTACVWRLPD 525 (882)
Q Consensus 506 ~~~la~~s~dg~i~iwd~~~ 525 (882)
|+.|++|...|++.+|++..
T Consensus 498 g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 498 GKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CcEEEEecCCCcEEEEEcCc
Confidence 99999999999999999864
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2e-16 Score=143.01 Aligned_cols=226 Identities=21% Similarity=0.330 Sum_probs=174.6
Q ss_pred eEEccCCCEEEEEeCC-eEEEEEcCC---------Cc-eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 002782 25 LVVSSDGSFIACACGE-SINIVDLSN---------AS-IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK 93 (882)
Q Consensus 25 va~s~dg~~la~~~~~-~I~i~d~~~---------~~-~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~ 93 (882)
-++||.+++++++... .|.+..+++ |+ .+...++|..+|..++|. ..+|.+|+. |.|+=|.+....
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhh
Confidence 6789999999998865 888888753 22 344557899999999999 456777765 999999986432
Q ss_pred e------EEEe--ecCC-----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccE
Q 002782 94 C------LRSW--KGHD-----GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160 (882)
Q Consensus 94 ~------~~~~--~~h~-----~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~ 160 (882)
. +... .-|. ..|.+|..+|..+-+++++.|+.+.-||+++|+....++||+.-|.++.--.....
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-- 170 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-- 170 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc--
Confidence 2 1111 1122 46899999998888888889999999999999999999999999999988433333
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEecC---------cc-cceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcc
Q 002782 161 LFSGSDDATVRVWDLLAKKCVATLDK---------HF-SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (882)
Q Consensus 161 l~sgs~dg~I~vwd~~~~~~~~~l~~---------h~-~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 230 (882)
+++|+.||++|+||..+++++..+.. |. ..|-+++. +..+|++|+. ..+.+|.++..++...+|...
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpipa 247 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPIPA 247 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEeccc
Confidence 99999999999999999999987743 22 23555554 4558887774 459999999999999999988
Q ss_pred eeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCC
Q 002782 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (882)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~ 283 (882)
.+..+.|..+ .++.+|..+.+.-|.+..
T Consensus 248 ~v~~v~F~~d-------------------------~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 248 RVHLVDFVDD-------------------------CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ceeEeeeecc-------------------------eEEEeccccceeeeeecc
Confidence 8887777643 567777777777776643
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.7e-18 Score=175.22 Aligned_cols=259 Identities=19% Similarity=0.248 Sum_probs=195.5
Q ss_pred eeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC--------ceEEeeeecccccEEEEEEccCCCcEEEEee
Q 002782 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 461 (882)
Q Consensus 390 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~ 461 (882)
.++..|.+.+..+. +.+.... +++++.||.+.+|+++. -+++.++.+|.++|.|+++++++. .+++|+
T Consensus 288 ~tl~s~~d~ir~l~--~~~sep~-lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg 363 (577)
T KOG0642|consen 288 FTLRSHDDCIRALA--FHPSEPV-LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGG 363 (577)
T ss_pred eeeecchhhhhhhh--cCCCCCe-EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-EEEeec
Confidence 36677888888886 5555555 99999999999999832 246778999999999999999987 799999
Q ss_pred CCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecc--cCce
Q 002782 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH--KRGI 539 (882)
Q Consensus 462 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h--~~~v 539 (882)
.||+|+.|++..........-.......+.+|...+..+++|+....|++++.||++++|+.....+ .++... ..-.
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 9999999998843322221122234566789999999999999999999999999999999877666 333322 2233
Q ss_pred EEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeEeecC-------cCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCe
Q 002782 540 WSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGH-------TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611 (882)
Q Consensus 540 ~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-------~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~ 611 (882)
+++.|-... ...++...-+.-.++++..+..+..+... ...+..+.+.|.+.+.+++..|+.|+++|..+++
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 455554333 12222222233333344444444444321 1346778888999999999999999999999999
Q ss_pred eEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782 612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 612 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~ 653 (882)
.+.....|...++++++.|+|.+|++++.|+.+++|+.....
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 999999999999999999999999999999999999986543
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=4.2e-17 Score=174.98 Aligned_cols=277 Identities=18% Similarity=0.234 Sum_probs=204.6
Q ss_pred CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE--Ee----eeecccccEEEEEE
Q 002782 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--VG----VGTGHMGAVGAVAF 449 (882)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~v~~ 449 (882)
+.+.+|++...............|.|+. +.|....+++.|+.+|.|.+||+..+.. .. ....|..+++.+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~--f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLK--FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEE--eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 3789999987754444445567888888 7788777899999999999999987654 22 23368899999999
Q ss_pred ccCCC-cEEEEeeCCCeEEEEecCCCCCCCCCcccccch--hhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCC
Q 002782 450 SKKLQ-NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK--AVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD 525 (882)
Q Consensus 450 s~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~ 525 (882)
..+.. .-+++++.||.|..|+++............... .........+++++|.+ +-..+++|+.+|.|.--....
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 65433 237888889999999887653211111000000 00112234678999988 457789999999887733322
Q ss_pred c--------eeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC-CCceeeEeecCcCCEEEEEEEeCCC-EEEE
Q 002782 526 L--------VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DGSCLKTFEGHTSSVLRASFLTRGA-QIVS 595 (882)
Q Consensus 526 ~--------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s 595 (882)
. +....+..|.++|.++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||-.. .+++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 2 2233556689999999999988877777779999999987 6777888888888899999999654 6677
Q ss_pred eecCCeEEEEEcCCC--eeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782 596 CGADGLVKLWTVRTG--ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (882)
Q Consensus 596 ~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 654 (882)
+..||.|.+||+... +++.+...+......+.|++.|+.|+.|...|.+.+|++.....
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~ 520 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLA 520 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchhh
Confidence 888999999999754 45555555556667788899999999999999999999976543
No 183
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=7.5e-18 Score=154.17 Aligned_cols=290 Identities=16% Similarity=0.231 Sum_probs=203.2
Q ss_pred eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeee-CCCcceEEeeeeeecCCCEEEEEeecCCeEEEE
Q 002782 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (882)
Q Consensus 348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 426 (882)
.+.+|...+.++.|-.. .+|..|...|.+.+|++.+......++ .+...|+.+. ..|+ +. +.+-+.|+.+.+|
T Consensus 9 vLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq--~~p~-d~-l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQ--SIPN-DS-LDTQGRDPLLILW 82 (323)
T ss_pred Eeccccchheehhhccc--hhhhcccccceEEEEEeecCccchhhhhhccceeecee--ecCC-cc-hhhcCCCceEEEE
Confidence 34478888888888643 358999999999999999998888888 5677888886 5555 44 8889999999999
Q ss_pred eCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCC-eEEEEecCCCCC----CC-CCcccccchhhhhhcCCCeeEE
Q 002782 427 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSD----DA-EQPMNLKAKAVVAAHGKDINSL 500 (882)
Q Consensus 427 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg-~i~~wd~~~~~~----~~-~~~~~~~~~~~~~~~~~~i~~~ 500 (882)
++.-+..+.. |.-.+.++-|.+.. +...+... ..-.++-+.... +. ................+.+.|.
T Consensus 83 ~ia~s~~i~i---~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 83 TIAYSAFISI---HSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred EccCcceEEE---eeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 9987554432 33445555554431 22222211 111222111100 00 0000000011112233455666
Q ss_pred EEcC-CC--cEEEEEcCCCcEEEEeCCCceeE----------EEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCC
Q 002782 501 AVAP-ND--SLVCTGSQDRTACVWRLPDLVSV----------VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567 (882)
Q Consensus 501 ~~s~-~~--~~la~~s~dg~i~iwd~~~~~~~----------~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~ 567 (882)
.+.. ++ -++++|-++|.+.+||+.++..+ .....|..+|.++.|.+....=++|+.+..+..|++..
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 5433 22 35667889999999999987433 33346899999999998777777888888899999864
Q ss_pred C--ce--eeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCC
Q 002782 568 G--SC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL 643 (882)
Q Consensus 568 ~--~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 643 (882)
. .+ ...+.-..-.|..+.+-||++.++|+|.||.|+||+.++..++..+..|...|++++|+|+...+|+++.|+.
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 3 22 1222333456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEC
Q 002782 644 VNLWHD 649 (882)
Q Consensus 644 i~iw~~ 649 (882)
|.+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=8.4e-18 Score=159.81 Aligned_cols=195 Identities=20% Similarity=0.328 Sum_probs=154.6
Q ss_pred CEEEEEeC-CeEEEEEcCCCceeeeecCCCccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEE--EeecCC-CCE
Q 002782 32 SFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSP--DDKLLFSSGHSREIRVWDLSTLKCLR--SWKGHD-GPA 105 (882)
Q Consensus 32 ~~la~~~~-~~I~i~d~~~~~~~~~l~~~~~~I~~l~~sp--d~~~las~~~dg~i~iwd~~~~~~~~--~~~~h~-~~V 105 (882)
..+|++.. +.|++||..+|+.+..++++...+..++|.. ....+.+|+.||+|++||+.+..... .+..|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 45666655 4999999999999999999999999999987 35678899999999999998765544 345555 567
Q ss_pred EEEEEcCCCCEEEEEe----CCCcEEEEECCCCeE-EEE-eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe
Q 002782 106 IGMACHPSGGLLATAG----ADRKVLVWDVDGGFC-THY-FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (882)
Q Consensus 106 ~~l~fs~~~~~lasg~----~dg~v~vwd~~~~~~-~~~-~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~ 179 (882)
.+++..-.++.+++|. .+-.|.+||++.... +.. ...|...|++++|+|. +..+|++||.||.|.++|+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CCCeEEeecccceEEeeecCCCc
Confidence 7777777888888886 467899999987765 333 3479999999999998 55789999999999999986543
Q ss_pred E---EEEecCcccceEEEEEccCC-CEEEEEeCCCeEEEEecCCceeeeeec
Q 002782 180 C---VATLDKHFSRVTSMAITSDG-STLISAGRDKVVNLWDLRDYSCKLTVP 227 (882)
Q Consensus 180 ~---~~~l~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~ 227 (882)
. +...-.|.+.|..+.|..++ +.+.+.+...+..+|++..+.....++
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 2 22233466789999998776 568888999999999999877544433
No 185
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=1.6e-17 Score=156.62 Aligned_cols=405 Identities=17% Similarity=0.208 Sum_probs=245.5
Q ss_pred ceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeeEEEeecCC
Q 002782 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGHSREIRVWDLSTLKCLRSWKGHD 102 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las-~~~dg~i~iwd~~~~~~~~~~~~h~ 102 (882)
...|||+|+++|+...-.+.|-|.++-+..+.+.. -+.|.-+.|+.|..++.. ++.++.|.+|++...+-...+....
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 36799999999999999999999998887665543 457888999999887664 5789999999999999888998889
Q ss_pred CCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCc---EEEEECCCC
Q 002782 103 GPAIGMACHPSGGL-LATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT---VRVWDLLAK 178 (882)
Q Consensus 103 ~~V~~l~fs~~~~~-lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~---I~vwd~~~~ 178 (882)
.++.+++|||||+. |.+..-|-.|.||.+.+....+. +-....+..++|+||++. .+..+.-.. +.+..-...
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f--~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQF--CAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCce--eeeeecccHHHHHHHHhhHHH
Confidence 99999999999965 55566789999999988776543 323455689999999875 444443211 111111122
Q ss_pred eEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhc
Q 002782 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258 (882)
Q Consensus 179 ~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (882)
..+..+....-..+++.|+|||..|+ +||---.-
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Ley------------------------------------- 202 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEY------------------------------------- 202 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEE---------Eecchhhh-------------------------------------
Confidence 23444444555678999999987665 45421000
Q ss_pred cccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccc
Q 002782 259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE 338 (882)
Q Consensus 259 ~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 338 (882)
.|..|... -+
T Consensus 203 ----------------kv~aYe~~----------------------lG-------------------------------- 212 (447)
T KOG4497|consen 203 ----------------KVYAYERG----------------------LG-------------------------------- 212 (447)
T ss_pred ----------------eeeeeeec----------------------cc--------------------------------
Confidence 00000000 01
Q ss_pred ccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEee
Q 002782 339 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 418 (882)
Q Consensus 339 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 418 (882)
+..+.|+| .++++++|+.|+.+++.|--+.+.. ++.+-.+.-
T Consensus 213 -----------------~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f--------------------~eflhl~s~ 254 (447)
T KOG4497|consen 213 -----------------LKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPF--------------------GEFLHLCSY 254 (447)
T ss_pred -----------------eeEEEecc-ccceEEeeccchhhhhhceeeeeeh--------------------hhhccchhc
Confidence 12223333 4556666666666666554333222 111111111
Q ss_pred cCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCee
Q 002782 419 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (882)
Q Consensus 419 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (882)
.|.+..+..-++.+.+ .-...++.|.|..- =+.-.... =.+|..... .......++..-.......+.
T Consensus 255 ~dp~~~~~~ke~~~~~------ql~~~cLsf~p~~~--~a~~~~~s-e~~YE~~~~---pv~~~~lkp~tD~pnPk~g~g 322 (447)
T KOG4497|consen 255 HDPTLHLLEKETFSIV------QLLHHCLSFTPTDL--EAHIWEES-ETIYEQQMT---PVKVHKLKPPTDFPNPKCGAG 322 (447)
T ss_pred cCchhhhhhhhhcchh------hhcccccccCCCcc--ccCccccc-hhhhhhhhc---ceeeecccCCCCCCCcccccc
Confidence 1111111110111000 01122344444321 01000000 001111000 000000111111122244677
Q ss_pred EEEEcCCCcEEEEEcC--CCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeec
Q 002782 499 SLAVAPNDSLVCTGSQ--DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 576 (882)
Q Consensus 499 ~~~~s~~~~~la~~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 576 (882)
-++|++|..++|+-.. -+.+.+||++..+....+. ...+|....|.|....|+.+.+...+++|......++.. .+
T Consensus 323 ~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~ 400 (447)
T KOG4497|consen 323 KLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PK 400 (447)
T ss_pred eeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CC
Confidence 8999999999998643 3569999998877655554 577899999999999999888888899999865444433 33
Q ss_pred CcCCEEEEEEEeCCCEEEEeecCC
Q 002782 577 HTSSVLRASFLTRGAQIVSCGADG 600 (882)
Q Consensus 577 h~~~v~~~~~s~~g~~l~s~~~dg 600 (882)
..-.|..++|..+|..++..+.|.
T Consensus 401 ~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 401 KGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred CCceeeeEEecCCCcEEEEEcCCc
Confidence 446799999999999999988886
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=6.1e-19 Score=185.50 Aligned_cols=291 Identities=22% Similarity=0.314 Sum_probs=232.0
Q ss_pred eeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCe
Q 002782 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (882)
Q Consensus 343 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 422 (882)
....+.+.||...|.|+.|.. .+.++++|++|..++||..++..+.....||.+.++.++ .+.. +.++++++.|..
T Consensus 180 mk~ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdla--vs~~-n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLA--VSSN-NTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhc--cchh-hhhhhhcccCce
Confidence 344567889999999999876 788999999999999999999999999999999999996 4444 445999999999
Q ss_pred EEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEE
Q 002782 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (882)
Q Consensus 423 i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (882)
|++|.+..+.++..+.+|++.|++++|+|- .+.+.||++++||..-... ...+.........-+.++.|
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~------~y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPR------IYVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEecccccccc------ccCCCCCCcccccceeeeec
Confidence 999999999999999999999999999995 3788999999999872110 01111111223355677888
Q ss_pred cCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCC-CCEEEEeeCCCcEEEEecCCCceeeEeecCcCCE
Q 002782 503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (882)
Q Consensus 503 s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 581 (882)
..++.-+++++.|+....|.+... ..+...+.-+.++.| ..+.+++-.+..+++|++.+|...+.+.+|...+
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~ 398 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEV 398 (1113)
T ss_pred cccccccccccCCcccccchhhHh------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccce
Confidence 889999999999999888876432 112222222233322 2466777788899999999999999999999999
Q ss_pred EEEEEEeCCCE-EEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782 582 LRASFLTRGAQ-IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (882)
Q Consensus 582 ~~~~~s~~g~~-l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 654 (882)
..+.++|.... ..+++.||...|||+-.|.++..+.-....+...+||+||..++....-|.+.|.....++.
T Consensus 399 yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 399 YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred eeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 99999996654 57899999999999999988887765567788889999999999888888888876554443
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.2e-16 Score=144.44 Aligned_cols=235 Identities=16% Similarity=0.253 Sum_probs=177.1
Q ss_pred eecCCCEEEEEeecCCeEEEEeCCC----------ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCC
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSES----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 475 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~ 475 (882)
++|.+++ +++|..+|.|-+..+.+ ...+...++|.+++..++|..+ +|++|+. |.|+-|..+...
T Consensus 18 ~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 18 ISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred hCCcceE-EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeeccC-ceEEEeeehhhh
Confidence 6788877 99999999999998653 2234455899999999999954 5676664 999999887543
Q ss_pred CCCCCccccc---chhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEE
Q 002782 476 DDAEQPMNLK---AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 552 (882)
Q Consensus 476 ~~~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 552 (882)
+......... +...-...-..|+++...|..+-+..++.|+.++-||+++|+..++++||..-|.++.--.....++
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL 172 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee
Confidence 2111000000 1111112234789999999887777778999999999999999999999999999999866677899
Q ss_pred EeeCCCcEEEEecCCCceeeEeecCc----------CCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCc
Q 002782 553 TASGDKTIKIWSISDGSCLKTFEGHT----------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622 (882)
Q Consensus 553 s~~~d~~i~iwd~~~~~~~~~~~~h~----------~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~ 622 (882)
+|+.||++|+||.+++++++.++... ..|. +..-+..+|+.|+. -.+.+|.+++.++...+. -..+
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~ 248 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPAR 248 (325)
T ss_pred ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE--EEeccCceEEecCC-CceeEEeccCCCceEEEe-cccc
Confidence 99999999999999999998876422 1243 33445568887664 479999999999988886 4667
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782 623 IWALAVGKKTEMFATGGSDALVNLWHDST 651 (882)
Q Consensus 623 v~~l~~s~~~~~l~s~~~dg~i~iw~~~~ 651 (882)
|..+.| +...++++|....+.-|.+..
T Consensus 249 v~~v~F--~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 249 VHLVDF--VDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eeEeee--ecceEEEeccccceeeeeecc
Confidence 778888 455688888888888887664
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.1e-17 Score=157.11 Aligned_cols=272 Identities=18% Similarity=0.275 Sum_probs=196.7
Q ss_pred cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecC-CCEEEEEeecCCeEEEEeCCCceEEeee--eccc-c
Q 002782 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVGVG--TGHM-G 442 (882)
Q Consensus 367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~-~ 442 (882)
..++++...|.|++||..+++....+.++...+..+. +..+ +...+.+++.||+|++||+++......+ ..+. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vr--f~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVR--FISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceE--EecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 5788888889999999999999999999998888887 4442 4445999999999999999886554433 3343 4
Q ss_pred cEEEEEEccCCCcEEEEee----CCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC-CcEEEEEcCCCc
Q 002782 443 AVGAVAFSKKLQNFLVSGS----SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRT 517 (882)
Q Consensus 443 ~v~~v~~s~~~~~~l~s~~----~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~s~dg~ 517 (882)
+..+++..-.++ ++++|. .+-.|.+||++.... ........|..+|+++.|+|+ .++|++||.||-
T Consensus 119 ~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq--------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL 189 (376)
T KOG1188|consen 119 PFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQ--------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL 189 (376)
T ss_pred cceEeeccCcCC-eEEeccccccCceEEEEEEeccccc--------hhhhhhhhccCcceeEEecCCCCCeEEeecccce
Confidence 566666654444 667664 467899999986531 134556789999999999995 589999999999
Q ss_pred EEEEeCCCcee---EEEEecccCceEEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeEeecCc------------CCE
Q 002782 518 ACVWRLPDLVS---VVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHT------------SSV 581 (882)
Q Consensus 518 i~iwd~~~~~~---~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~------------~~v 581 (882)
|.+||+..... +...-.|...|.++.|..++ +.|.+-+...+..+|+++.+.+...++... .-+
T Consensus 190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 99999975422 22222377889999999876 458888888999999999998766554321 011
Q ss_pred EEEEEEeCCCEEEEeec-CCeEEEEEcC---CC---eeEEEecc-CCCceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782 582 LRASFLTRGAQIVSCGA-DGLVKLWTVR---TG---ECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (882)
Q Consensus 582 ~~~~~s~~g~~l~s~~~-dg~i~iwd~~---~~---~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~ 649 (882)
.......++..++.++. -|...++-+. ++ +.+..+.+ |..-|.++.|...+.++.|||.||.+.+|+.
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 11111123445555554 4555554332 22 34556665 6677888889888999999999999999996
No 189
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=3.8e-17 Score=158.01 Aligned_cols=213 Identities=16% Similarity=0.290 Sum_probs=173.7
Q ss_pred eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC-CcEEEEEcC
Q 002782 436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQ 514 (882)
Q Consensus 436 ~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~s~ 514 (882)
...+|.++|..++|+|-+.+.+++||.|.+|.+|.+........ ...+...+.+|...|.-++|+|- .+.|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~---ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD---LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC---cccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 45689999999999998888999999999999999986532111 12356677899999999999995 478899999
Q ss_pred CCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcC-CEEEEEEEeCCCEE
Q 002782 515 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGAQI 593 (882)
Q Consensus 515 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~s~~g~~l 593 (882)
|.+|.+|++.+++.+.++. |...|+++.|+.||.+|++.+.|..|||||.++++.+..-.+|.+ .-..+.|..+|..+
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 9999999999999999988 999999999999999999999999999999999999998888876 45667888999844
Q ss_pred EEee---cCCeEEEEEcCCCe---eEEEeccCCCceEEEEEcCCCCEEEE-EeCCCCEEEEECCCHH
Q 002782 594 VSCG---ADGLVKLWTVRTGE---CIATYDKHEDKIWALAVGKKTEMFAT-GGSDALVNLWHDSTAA 653 (882)
Q Consensus 594 ~s~~---~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~iw~~~~~~ 653 (882)
-+|- .+..+-+||..+-+ ...+++. .+.|.---+.+|...+.. |-.|+.|+.|.+..+.
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4432 36789999876543 3455553 445555557788877664 5579999999988654
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=4.7e-18 Score=172.12 Aligned_cols=267 Identities=21% Similarity=0.333 Sum_probs=190.6
Q ss_pred eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC--------CCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 002782 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS--------TLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124 (882)
Q Consensus 53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~--------~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg 124 (882)
..++..|.+.|.+++|.|....|++++.||.|.+|+++ .-+++.+|++|.+||.|+++.+++..+.+|+.||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 34677899999999999999999999999999999993 2368899999999999999999999999999999
Q ss_pred cEEEEECC------CC----eEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecC--cccceE
Q 002782 125 KVLVWDVD------GG----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK--HFSRVT 192 (882)
Q Consensus 125 ~v~vwd~~------~~----~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~--h~~~v~ 192 (882)
+|+.|++. .. .....+.||.+.|+.+++|+..+. |++++.||+++.|+.....+ .++.. ..+...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~--Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR--LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc--eeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999653 11 244567899999999999997666 99999999999999876665 33322 223344
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcC
Q 002782 193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 272 (882)
Q Consensus 193 ~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (882)
++.+.... ++-...+.....+++.+.+....+.. .+.. .
T Consensus 444 svd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~---------~~s~------------------------------~ 482 (577)
T KOG0642|consen 444 SVDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLI---------FESS------------------------------A 482 (577)
T ss_pred eEeeccch--hHhhhhhcccccccchhhhhhhheee---------cccc------------------------------C
Confidence 45543322 11111222333333332221111100 0000 0
Q ss_pred CCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeeccc
Q 002782 273 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352 (882)
Q Consensus 273 ~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 352 (882)
.+..+ .
T Consensus 483 ~~~~~--------------------------------------------------------------------------~ 488 (577)
T KOG0642|consen 483 SPGPR--------------------------------------------------------------------------R 488 (577)
T ss_pred CCccc--------------------------------------------------------------------------c
Confidence 00000 0
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce
Q 002782 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (882)
Q Consensus 353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 432 (882)
...+.-+...+ +..+.+++..++.|+++|..++..+.....|...+++++ +.|+|.+ +++++.|+.+++|.+....
T Consensus 489 ~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsla--i~~ng~~-l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 489 YPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLA--IDPNGPY-LMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceeccee--ecCCCce-EEeecCCceeehhhccchh
Confidence 01111122222 556778888899999999999999999999999999999 8898887 9999999999999998887
Q ss_pred EEeeeeccc
Q 002782 433 CVGVGTGHM 441 (882)
Q Consensus 433 ~~~~~~~~~ 441 (882)
++.....|.
T Consensus 565 ~~~es~~~r 573 (577)
T KOG0642|consen 565 CVLESTAHR 573 (577)
T ss_pred eeecccccc
Confidence 776655554
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=6.3e-17 Score=156.52 Aligned_cols=206 Identities=19% Similarity=0.283 Sum_probs=163.3
Q ss_pred eeecCCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-------eeEEEeecCCCCEEEEEEcCCC-CEEEEEeCCC
Q 002782 54 STIEGGSDTITALALSPD-DKLLFSSGHSREIRVWDLSTL-------KCLRSWKGHDGPAIGMACHPSG-GLLATAGADR 124 (882)
Q Consensus 54 ~~l~~~~~~I~~l~~spd-~~~las~~~dg~i~iwd~~~~-------~~~~~~~~h~~~V~~l~fs~~~-~~lasg~~dg 124 (882)
..+.||.++|..++|+|- ...||+|+.|.+|.||++..+ +++..+.||...|-.++|+|.. +.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 355789999999999994 567899999999999999754 4677889999999999999965 5788999999
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCccc-ceEEEEEccCCCEE
Q 002782 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS-RVTSMAITSDGSTL 203 (882)
Q Consensus 125 ~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~-~v~~l~~s~~~~~l 203 (882)
+|.+||+.+|..+.++. |...|.++.|+.||.. +++++.|..|+|||..+++.+..-.+|.+ .-..+.|-.+|..+
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~--l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSL--LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCce--eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 99999999999888888 9999999999998876 99999999999999999999999888877 45566788888844
Q ss_pred EEEe---CCCeEEEEecCCceee---eeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEE
Q 002782 204 ISAG---RDKVVNLWDLRDYSCK---LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR 277 (882)
Q Consensus 204 ~s~~---~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 277 (882)
-+|- .+..+-+||....+.. ..+.....+.--.+ +.+.....++|-.|+.||
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFy----------------------D~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFY----------------------DPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccCCceEEeee----------------------cCCCCEEEEEecCCcceE
Confidence 4442 5678999997765432 22222222221111 122345677888899999
Q ss_pred EEECCCc
Q 002782 278 MWNADSA 284 (882)
Q Consensus 278 ~w~~~~~ 284 (882)
.|.+...
T Consensus 290 YyEit~d 296 (472)
T KOG0303|consen 290 YFEITNE 296 (472)
T ss_pred EEEecCC
Confidence 9998766
No 192
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=1.5e-16 Score=147.54 Aligned_cols=268 Identities=21% Similarity=0.344 Sum_probs=199.7
Q ss_pred CCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcC-------CcEEEEeCCCc---------ee
Q 002782 325 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI-------EQVQVYDLSSM---------SC 388 (882)
Q Consensus 325 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-------~~i~i~d~~~~---------~~ 388 (882)
++.+.+..+.... .......+..+.++|..++-+|.+..+|+++.++ ....+|.+... ++
T Consensus 39 dNqVhll~~d~e~----s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~ 114 (370)
T KOG1007|consen 39 DNQVHLLRLDSEG----SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLEC 114 (370)
T ss_pred cceeEEEEecCcc----chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhH
Confidence 4666666655443 2233455667889999999999999999998773 23678987532 23
Q ss_pred eeeee-CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE-Eeeee-----cccccEEEEEEccCCCcEEEEee
Q 002782 389 SYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGT-----GHMGAVGAVAFSKKLQNFLVSGS 461 (882)
Q Consensus 389 ~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~v~~s~~~~~~l~s~~ 461 (882)
+..+. .+-+.+.|+. |.|++.. +++-. |..|.+|++..+.. ...+. .+....++-+|+|....--+...
T Consensus 115 v~~Ldteavg~i~cve--w~Pns~k-lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 115 VASLDTEAVGKINCVE--WEPNSDK-LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred hhcCCHHHhCceeeEE--EcCCCCe-eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 33343 4556889999 7788887 55444 88999999987655 22221 35667888899983332355566
Q ss_pred CCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCc-EEEEEcCCCcEEEEeCCCc-eeEEEEecccCce
Q 002782 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGI 539 (882)
Q Consensus 462 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v 539 (882)
.|+++..||+++... ...+..+|+..+..+.|.|+.+ +|++++.||.|+|||.+.. .++..+.+|.-.|
T Consensus 191 ~d~tl~~~D~RT~~~---------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv 261 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKK---------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV 261 (370)
T ss_pred CCCcEEEEEccchhh---------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence 789999999986532 4455678999999999999875 6789999999999999754 6788899999999
Q ss_pred EEEEEcCC-CCEEEEeeCCCcEEEEecCCC-----------------------------ceeeEeecCcCCEEEEEEEeC
Q 002782 540 WSVEFSPV-DQVVITASGDKTIKIWSISDG-----------------------------SCLKTFEGHTSSVLRASFLTR 589 (882)
Q Consensus 540 ~~l~~s~~-~~~l~s~~~d~~i~iwd~~~~-----------------------------~~~~~~~~h~~~v~~~~~s~~ 589 (882)
+++.|+|. ++++++|+.|..|.+|....- ..+.++..|..+|.+++||.-
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA 341 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence 99999994 678999999999999975321 123467789999999999876
Q ss_pred CCE-EEEeecCCeEEEEEcCC
Q 002782 590 GAQ-IVSCGADGLVKLWTVRT 609 (882)
Q Consensus 590 g~~-l~s~~~dg~i~iwd~~~ 609 (882)
..+ +++-+.||.+.|=.+..
T Consensus 342 dPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 342 DPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred CCeeEEEeccCceEEeecCCh
Confidence 665 57889999998876643
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.7e-17 Score=155.21 Aligned_cols=248 Identities=17% Similarity=0.188 Sum_probs=181.8
Q ss_pred cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeC--CCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCC
Q 002782 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 429 (882)
Q Consensus 352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 429 (882)
|...|.++.|.. ....+.+|.++++|...|+++.+.+..+.. ..+.|+.++ .+|.++. +++.+.++.|.+||..
T Consensus 104 H~SNIF~L~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~--~~P~DN~-~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 104 HRSNIFSLEFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMD--QHPTDNT-LIVVTRAKLVSFIDNR 179 (609)
T ss_pred cccceEEEEEcc-CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecc--cCCCCce-EEEEecCceEEEEecc
Confidence 556788888876 667888999999999999999988766543 335899998 8888776 9999999999999987
Q ss_pred Cce-EE--eeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC
Q 002782 430 SRC-CV--GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (882)
Q Consensus 430 ~~~-~~--~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (882)
... .. ..+.........+.|+|..+.++++.+..+-+-+||.......... ......+......-.++.|+|+|
T Consensus 180 d~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~---~~~~~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 180 DRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ---RSMFKGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred CCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh---hhccccCcccchhhhheeeCCCC
Confidence 654 11 1222344567788999998989999999999999998764321100 00011111112233578899999
Q ss_pred cEEEEEcCCCcEEEEeCCCceeEEEEecccC-------ceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-----------
Q 002782 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKR-------GIWSVEFSPVDQVVITASGDKTIKIWSISDG----------- 568 (882)
Q Consensus 507 ~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~-------~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~----------- 568 (882)
+.+.+--....-.+||+.+..+..--..|+. .+.+++|..| ..+++|+.+-.|++|.+...
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~ 335 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGH 335 (609)
T ss_pred CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCc
Confidence 9988876666677888877443322222332 4677888754 45999999999999987521
Q ss_pred ------------ceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEc
Q 002782 569 ------------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (882)
Q Consensus 569 ------------~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 607 (882)
..+..+.||..-+..+.|+|...+|++.+-...+++|.-
T Consensus 336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred chhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 123567899999999999999999999999999999974
No 194
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=2.3e-16 Score=173.50 Aligned_cols=180 Identities=21% Similarity=0.234 Sum_probs=137.0
Q ss_pred EEcCCCceeeeecCCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------eeEEEeecCCCCEEEEEEcCCCCE
Q 002782 45 VDLSNASIKSTIEGGSDTITALALSPDD-KLLFSSGHSREIRVWDLSTL-------KCLRSWKGHDGPAIGMACHPSGGL 116 (882)
Q Consensus 45 ~d~~~~~~~~~l~~~~~~I~~l~~spd~-~~las~~~dg~i~iwd~~~~-------~~~~~~~~h~~~V~~l~fs~~~~~ 116 (882)
|++ .|..+..+..|+..|..++.++.. .++++|+.||+|++||...- +...++..-.+++.++.+.+.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 577888898899999999988766 99999999999999998531 233344445789999999999999
Q ss_pred EEEEeCCCcEEEEECCCC--e-----EEEEe--ecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEec--
Q 002782 117 LATAGADRKVLVWDVDGG--F-----CTHYF--KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-- 185 (882)
Q Consensus 117 lasg~~dg~v~vwd~~~~--~-----~~~~~--~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~-- 185 (882)
+|+++.||.|.+.+++.. . +.... +.....|..-+|........++.+..-+.|..||+.......+++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999999752 1 11111 122233445555544333478888899999999998876555543
Q ss_pred CcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeee
Q 002782 186 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 225 (882)
Q Consensus 186 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 225 (882)
...+.|++++.+|.+.++++|+..|.+.+||++-...+..
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILS 1232 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeec
Confidence 3457899999999999999999999999999986654433
No 195
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.75 E-value=8e-15 Score=159.82 Aligned_cols=186 Identities=24% Similarity=0.362 Sum_probs=153.8
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCceeeeecCCCcc----EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCC
Q 002782 30 DGSFIA-CACGESINIVDLSNASIKSTIEGGSDT----ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP 104 (882)
Q Consensus 30 dg~~la-~~~~~~I~i~d~~~~~~~~~l~~~~~~----I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~ 104 (882)
+.+.++ ..+.+.+.|||...+.....+...... ..-+.++++.-++++|+.-+.|.+|++..-..-..+.||.+.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 344444 445568999999988877766654332 223345778889999999999999999744444468999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEE
Q 002782 105 AIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183 (882)
Q Consensus 105 V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~-~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~ 183 (882)
|..+.++.||.++++.|.|.++++|++++++... ..-+|+..|+.++|+|+ .+++++.|.+.++|+. .+..+..
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~-~~~~l~~ 252 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGV-NGTQLEV 252 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc----eeEEeccceEEEEEec-ccceehh
Confidence 9999999999999999999999999999988765 66689999999999996 3999999999999975 4555668
Q ss_pred ecCccc-ceEEEEEccCCCEEEEEeCCCeEEEEecCCc
Q 002782 184 LDKHFS-RVTSMAITSDGSTLISAGRDKVVNLWDLRDY 220 (882)
Q Consensus 184 l~~h~~-~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 220 (882)
+.+|.+ .++.++..++...+++++.|+.+++|++...
T Consensus 253 y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 253 YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 888875 7999999999999999999999999998654
No 196
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=5.1e-16 Score=144.05 Aligned_cols=281 Identities=22% Similarity=0.320 Sum_probs=200.9
Q ss_pred CCCcEEEEECCCC--eEE-EEeecCCCcEEEEEEecCCCccEEEEEeCC-------CcEEEEECCCC---------eEEE
Q 002782 122 ADRKVLVWDVDGG--FCT-HYFKGHKGVVSSILFHPDTDKSLLFSGSDD-------ATVRVWDLLAK---------KCVA 182 (882)
Q Consensus 122 ~dg~v~vwd~~~~--~~~-~~~~~h~~~V~~l~f~~~~~~~~l~sgs~d-------g~I~vwd~~~~---------~~~~ 182 (882)
.|+.|.+-+++.+ ... ..|..|.+.|+.++-+|-.. .+|+++..+ ..+.||.+... +++.
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~-~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQ-RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCC-ceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 4577777666443 222 34566889999999999754 567776542 24779987542 3455
Q ss_pred Eec-CcccceEEEEEccCCCEEEEEeCCCeEEEEecCCcee-eeeecCcceeeEEEecCCCCCcccccccchhhhhhccc
Q 002782 183 TLD-KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC-KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 260 (882)
Q Consensus 183 ~l~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (882)
.+. .+.+.|.++.|.|++..+++-. |..|.+|++..... +..++....
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s----------------------------- 166 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES----------------------------- 166 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccc-----------------------------
Confidence 554 5667999999999999998887 78899999876543 111111000
Q ss_pred cccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccc
Q 002782 261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK 340 (882)
Q Consensus 261 ~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 340 (882)
T Consensus 167 -------------------------------------------------------------------------------- 166 (370)
T KOG1007|consen 167 -------------------------------------------------------------------------------- 166 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeeeeecccCCceEEEEEeCC-CCcEEEEEEcCCcEEEEeCCCceeeeeee-CCCcceEEeeeeeecCCCEEEEEee
Q 002782 341 MELILSKRLVGYNEEILDLKFLGE-EEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGS 418 (882)
Q Consensus 341 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~ 418 (882)
.++.....+-+|+|. +++.++ .++++.+..||+.+..+...+. .|...+..++ +.|+...++++|+
T Consensus 167 ---------~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD--fNpnkq~~lvt~g 234 (370)
T KOG1007|consen 167 ---------AEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD--FNPNKQHILVTCG 234 (370)
T ss_pred ---------ccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhhcceeeecc--CCCCceEEEEEcC
Confidence 001122233445552 444444 4556999999999988776654 6888999999 9999999999999
Q ss_pred cCCeEEEEeCCC-ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCC-------------------
Q 002782 419 KDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA------------------- 478 (882)
Q Consensus 419 ~dg~i~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~------------------- 478 (882)
+||.|++||.+. ..++..+.+|...|+++.|+|....++++|+.|..|.+|.........
T Consensus 235 DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer 314 (370)
T KOG1007|consen 235 DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEER 314 (370)
T ss_pred CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHh
Confidence 999999999875 457888999999999999999888899999999999999865432110
Q ss_pred CCcccccchhhhhhcCCCeeEEEEcCCC-cEEEEEcCCCcEEEEeCCC
Q 002782 479 EQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPD 525 (882)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~la~~s~dg~i~iwd~~~ 525 (882)
..+..-....+...|...|.+++||.-. =++|+-+.||.+.|=.+..
T Consensus 315 ~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 315 VKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0111122334667899999999998744 5678889999998876543
No 197
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=2.2e-16 Score=148.99 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=114.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeecCC
Q 002782 66 LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHK 144 (882)
Q Consensus 66 l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg-~~dg~v~vwd~~~~~~~~~~~~h~ 144 (882)
..|||+|+++|++++- .+.|-|..+.+..+.+.- -..|.-+.|..|.-++..+ ..|+.|.+|++...+-...+...+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 5799999999999876 888889888776655543 3567788999988876654 578899999999998888899889
Q ss_pred CcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782 145 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (882)
Q Consensus 145 ~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d 209 (882)
.++..++|+|||+ .+|.+..-+-.|.||.+.+.++... +.....+..++|+|||++.+.+++-
T Consensus 92 agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 92 AGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred CcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecc
Confidence 9999999999976 4677888899999999998886643 3333456899999999999888754
No 198
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.74 E-value=1.2e-15 Score=153.18 Aligned_cols=437 Identities=13% Similarity=0.211 Sum_probs=260.6
Q ss_pred CEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEc
Q 002782 32 SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACH 111 (882)
Q Consensus 32 ~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs 111 (882)
.++++..++.+.|.+ +.|+..+.+..|.+.|.|-.|+|||.-|++++.||.|++|. .+|-+..++-....+|.|++|.
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence 356666666777777 57888889999999999999999999999999999999998 4555444555567899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccce
Q 002782 112 PSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV 191 (882)
Q Consensus 112 ~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v 191 (882)
|+..-++.+- .+.+.|=.+.-...+-..+.|.+-|.++.|++..+. +++|+.|-..++||- .|..+..-..|.-+|
T Consensus 155 p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l--I~sgGED~kfKvWD~-~G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 155 PNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI--IASGGEDFRFKIWDA-QGANLFTSAAEEYAI 230 (737)
T ss_pred CCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccc--eeecCCceeEEeecc-cCcccccCChhccce
Confidence 9988777653 467888788777777889999999999999997654 999999999999995 677777888899999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEc
Q 002782 192 TSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 271 (882)
Q Consensus 192 ~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (882)
++++|.|+ +.++.++ -+++++ .-|....+..+.++++|. .+.++.
T Consensus 231 TSva~npd-~~~~v~S-~nt~R~----------~~p~~GSifnlsWS~DGT-----------------------Q~a~gt 275 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWS-YNTARF----------SSPRVGSIFNLSWSADGT-----------------------QATCGT 275 (737)
T ss_pred eeeeeccc-cceeeee-eeeeee----------cCCCccceEEEEEcCCCc-----------------------eeeccc
Confidence 99999999 4444444 334442 234445677788888875 556666
Q ss_pred CCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecc
Q 002782 272 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 351 (882)
Q Consensus 272 ~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 351 (882)
..|.+.+=-+-...+ ..+..-++......+.+-+....... ...
T Consensus 276 ~~G~v~~A~~ieq~l---------------------------~~~n~~~t~~~r~~I~vrdV~~~v~d---------~LE 319 (737)
T KOG1524|consen 276 STGQLIVAYAIEQQL---------------------------VSGNLKATSKSRKSITVRDVATGVQD---------ILE 319 (737)
T ss_pred cCceEEEeeeehhhh---------------------------hhccceeEeeccceEEeehhhhhHHH---------Hhh
Confidence 666654422211100 00111122222333333332221110 011
Q ss_pred cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (882)
Q Consensus 352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 431 (882)
....+..... .-.+|++++. ..+++|+-........+.+....+.-+. ...+.+++ .+..++.+|.....
T Consensus 320 ~p~rv~k~sL---~Y~hLvvaTs-~qvyiys~knwntpiiidgre~tr~lie----q~ek~fli--~dgsSi~lytyegR 389 (737)
T KOG1524|consen 320 FPQRVVKFSL---GYGHLVVATS-LQVYIYSEKNWNTPIIIDGREDTRNLIE----QGEKYFLI--LDGSSIWLYTYEGR 389 (737)
T ss_pred Cccceeeeee---ceeEEEEEec-cEEEEEecCCccCcEEEeccccchhHhh----hhhhheEE--ecCcEEEEEEecCc
Confidence 1222222221 2224555544 5788887766665555555544442221 11122122 22334555544432
Q ss_pred eEEee-eeccc-ccE--EEEEEccCCCcEEEEe--eCCCeEEEEec-CCCCCCCCCcccccchhhhhhcCCCeeEEEEc-
Q 002782 432 CCVGV-GTGHM-GAV--GAVAFSKKLQNFLVSG--SSDHTIKVWSF-DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA- 503 (882)
Q Consensus 432 ~~~~~-~~~~~-~~v--~~v~~s~~~~~~l~s~--~~dg~i~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s- 503 (882)
..... +.+.. ... ..+....+ .|+.- .....+.+||. .++..... .....|...|..++..
T Consensus 390 ~~~np~~Pg~~~dlL~~rtlsLand---tLaird~ad~kvlhlFd~istgk~qgD--------gk~L~hk~~IveIAldq 458 (737)
T KOG1524|consen 390 LHLNPRYPGSQIDLLTWRTLSLAND---TLAIRDNADPKVLHLFDLISTGKRQGD--------GKSLRHKQQIVEIALDQ 458 (737)
T ss_pred eecCCCCCCcccccccceeeecccc---eEEeecCCCCeeEEeccCCCCCcccCC--------ccccchhhhHHHhHhhc
Confidence 21110 11100 000 12222222 23322 22345677777 44322111 1112244555555543
Q ss_pred ---CCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCC
Q 002782 504 ---PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567 (882)
Q Consensus 504 ---~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~ 567 (882)
++++.++.-...+.+.|-...+......+.--...|..++|+.. .-+++|-.|+.+.||-..+
T Consensus 459 kG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmVhtLawndt-tNiLcglqDt~fsVWy~pn 524 (737)
T KOG1524|consen 459 KGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDT-TNILCGLQDTCFSVWYYPN 524 (737)
T ss_pred cCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhhhhhhhccc-cceeeeeccceEEEEEcCC
Confidence 45667777777777777666543222222223455788899854 4466788899999998754
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.2e-16 Score=170.77 Aligned_cols=192 Identities=20% Similarity=0.253 Sum_probs=145.1
Q ss_pred CCCEEEEEeecCCeEEEEeCCCceEEeeee-cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccch
Q 002782 409 SGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 487 (882)
Q Consensus 409 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 487 (882)
.... ++++++-..|+|||.....++..+. +....++++.-+....+++++|..||.|++||.+..... ...
T Consensus 1176 ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-------s~v 1247 (1387)
T KOG1517|consen 1176 QSGH-LLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-------SLV 1247 (1387)
T ss_pred hCCe-EEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-------ccc
Confidence 3344 4445557889999998877766544 455567777776655669999999999999998765322 244
Q ss_pred hhhhhcCCC--eeEEEEcCCCc-EEEEEcCCCcEEEEeCCCcee--EEEEeccc--C-ceEEEEEcCCCCEEEEeeCCCc
Q 002782 488 AVVAAHGKD--INSLAVAPNDS-LVCTGSQDRTACVWRLPDLVS--VVTFRGHK--R-GIWSVEFSPVDQVVITASGDKT 559 (882)
Q Consensus 488 ~~~~~~~~~--i~~~~~s~~~~-~la~~s~dg~i~iwd~~~~~~--~~~~~~h~--~-~v~~l~~s~~~~~l~s~~~d~~ 559 (882)
...+.|... |..+.+-++|- .|++|+.||.|++||++.... ..++..|. + ..+++..+++...+|+|+. +.
T Consensus 1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ 1326 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL 1326 (1387)
T ss_pred eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce
Confidence 556677776 99999998775 499999999999999987422 22233333 3 4999999999999999999 99
Q ss_pred EEEEecCCCceeeEeec-------CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCC
Q 002782 560 IKIWSISDGSCLKTFEG-------HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 610 (882)
Q Consensus 560 i~iwd~~~~~~~~~~~~-------h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~ 610 (882)
|+||++. |+.+..+.. ..+++.+++|+|.-.+|+.|+.|..|.||....+
T Consensus 1327 ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1327 IKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred EEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 9999984 555544432 2357899999999999999999999999987654
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=3.6e-15 Score=157.98 Aligned_cols=269 Identities=12% Similarity=0.188 Sum_probs=177.7
Q ss_pred EEEEcCCcEEEEeCCC-ce--eeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCC-CceE--Eeeeeccccc
Q 002782 370 AVATNIEQVQVYDLSS-MS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCC--VGVGTGHMGA 443 (882)
Q Consensus 370 ~~~~~~~~i~i~d~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~--~~~~~~~~~~ 443 (882)
++...++.|.+|++.+ +. ....+.. .+....+. ++|+++.+.+++..++.|.+|++. ++.. +... ...+.
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~--~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~ 81 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMV--ISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGS 81 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEE--ECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCC
Confidence 3445679999999964 32 3344432 34455565 789999855666678999999986 3332 2222 12345
Q ss_pred EEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE-cCCCcEEEEe
Q 002782 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWR 522 (882)
Q Consensus 444 v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-s~dg~i~iwd 522 (882)
...++++|+++.++++...++.|.+|++........ ..... .+.....+++++|+|++++++ ..++.|.+||
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~------~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d 154 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA------PIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFT 154 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC------ceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEE
Confidence 678999999985555555689999999864211000 11111 122346778999999888654 4568999999
Q ss_pred CCCceeEEE-----Ee-cccCceEEEEEcCCCCEEEEeeC-CCcEEEEecCC--C--ceeeEeecCc------CCEEEEE
Q 002782 523 LPDLVSVVT-----FR-GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISD--G--SCLKTFEGHT------SSVLRAS 585 (882)
Q Consensus 523 ~~~~~~~~~-----~~-~h~~~v~~l~~s~~~~~l~s~~~-d~~i~iwd~~~--~--~~~~~~~~h~------~~v~~~~ 585 (882)
+.+...+.. .. ........+.|+|++++++++.. +++|.+|++.. + +.+..+..+. .....+.
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 976332210 11 12344678999999999988876 89999999973 3 3344443221 1234588
Q ss_pred EEeCCCEEEEeec-CCeEEEEEcCCCe----eEEEeccCCCceEEEEEcCCCCEEEEEeC-CCCEEEEECC
Q 002782 586 FLTRGAQIVSCGA-DGLVKLWTVRTGE----CIATYDKHEDKIWALAVGKKTEMFATGGS-DALVNLWHDS 650 (882)
Q Consensus 586 ~s~~g~~l~s~~~-dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iw~~~ 650 (882)
|+|+|++|+++.. ++.|.+|++.... .+..... ....+.+.++|||++|+++.. ++.|.+|++.
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999999988865 6899999986533 2232222 124567899999999998775 8999999875
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=9e-16 Score=166.12 Aligned_cols=301 Identities=23% Similarity=0.333 Sum_probs=195.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC---CCcEEEEEEecCCCccEEEEEeCCCcEEEEECC-CC
Q 002782 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH---KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AK 178 (882)
Q Consensus 103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h---~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~-~~ 178 (882)
.+-..+.|+|=...++++...-.|+|||++.++++..|..+ ...|+.+.+..+.+..++++|+.||.|+||+-- .+
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 35567889998888999887789999999999998887644 456999999988888899999999999999642 21
Q ss_pred ----eEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhh
Q 002782 179 ----KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQ 254 (882)
Q Consensus 179 ----~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (882)
+.+... ++=...+-+...-|.|.-|.-.
T Consensus 1145 ~~~~eLVTaw------------~~Ls~~~~~~r~~~~v~dWqQ~------------------------------------ 1176 (1387)
T KOG1517|consen 1145 WKKPELVTAW------------SSLSDQLPGARGTGLVVDWQQQ------------------------------------ 1176 (1387)
T ss_pred cCCceeEEee------------ccccccCccCCCCCeeeehhhh------------------------------------
Confidence 222211 1111111111111222222211
Q ss_pred hhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEec
Q 002782 255 TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334 (882)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 334 (882)
..+++++|+-..|++||.........
T Consensus 1177 ---------~G~Ll~tGd~r~IRIWDa~~E~~~~d--------------------------------------------- 1202 (1387)
T KOG1517|consen 1177 ---------SGHLLVTGDVRSIRIWDAHKEQVVAD--------------------------------------------- 1202 (1387)
T ss_pred ---------CCeEEecCCeeEEEEEecccceeEee---------------------------------------------
Confidence 12344444455555555443311100
Q ss_pred ccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc---eeeeeeeCCCcc--eEEeeeeeecC
Q 002782 335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEI--VLCLDTCALSS 409 (882)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~--v~~~~~~~~~~ 409 (882)
...+.+..++.+......++.+++|..||.+++||.... ..+...+.|... |..+. +.+.
T Consensus 1203 -------------iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s--lq~~ 1267 (1387)
T KOG1517|consen 1203 -------------IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS--LQRQ 1267 (1387)
T ss_pred -------------cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE--eecC
Confidence 000112223333333346789999999999999997643 345567778877 87777 5554
Q ss_pred CCEEEEEeecCCeEEEEeCCCceEEee--eeccc--c-cEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccc
Q 002782 410 GKILIVTGSKDNSVRLWDSESRCCVGV--GTGHM--G-AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (882)
Q Consensus 410 ~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~--~-~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 484 (882)
|-.-+++|+.+|.|++||+........ ...|. + ..+++.+++..+ ++++|+. +.|++|++..........
T Consensus 1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~--- 1342 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKY--- 1342 (1387)
T ss_pred CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhccccc---
Confidence 443499999999999999987422222 22222 3 599999999877 7888888 999999987653211110
Q ss_pred cchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc
Q 002782 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL 526 (882)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~ 526 (882)
...........+.|++|+|..-++|+|+.|.+|.||.....
T Consensus 1343 -n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1343 -NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred -CcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 11112223456799999999999999999999999986654
No 202
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5e-17 Score=161.51 Aligned_cols=314 Identities=17% Similarity=0.289 Sum_probs=237.8
Q ss_pred eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-ecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 002782 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHP--SGGLLATAGADRKVLVW 129 (882)
Q Consensus 53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~-~~h~~~V~~l~fs~--~~~~lasg~~dg~v~vw 129 (882)
...|.+|.+.|..+.|...|..|++|+.|..|.+|||..++....+ .||...|....|-| +...+++++.||.|++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 4567889999999999999999999999999999999999887777 46999999989988 34579999999999998
Q ss_pred ECC-CCeE--EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEe---cCccc---ceEEEEEccCC
Q 002782 130 DVD-GGFC--THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFS---RVTSMAITSDG 200 (882)
Q Consensus 130 d~~-~~~~--~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l---~~h~~---~v~~l~~s~~~ 200 (882)
.+. ++.+ +..+..|.++|..++.-|+.. .-|.+++.|+.+.-.|+..+.+...+ ..+.. ...+++..|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 874 3333 345667999999999998854 56899999999999999877654333 22333 46778888866
Q ss_pred C-EEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEE
Q 002782 201 S-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMW 279 (882)
Q Consensus 201 ~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w 279 (882)
. .+++++.|..+++||.+.......- ..+. .+.|.
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n---~~~~--~f~p~--------------------------------------- 329 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENN---GVLD--KFCPH--------------------------------------- 329 (559)
T ss_pred ccccccCChhhhhhhhcccchhhcccc---chhh--hcCCc---------------------------------------
Confidence 5 7889999999999997643211000 0000 00000
Q ss_pred ECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccc-----ceeeeeee-ecccC
Q 002782 280 NADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK-----MELILSKR-LVGYN 353 (882)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~-~~~~~ 353 (882)
....+..-.|+.+.++.++..+++..+|-.|++++........ ..-..... ..||.
T Consensus 330 ------------------hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHr 391 (559)
T KOG1334|consen 330 ------------------HLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHR 391 (559)
T ss_pred ------------------cccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccc
Confidence 0011233567888999899999999999999999554432211 00112222 56665
Q ss_pred C--ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782 354 E--EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (882)
Q Consensus 354 ~--~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 431 (882)
+ .|-.+.|.++...++++|+.-|.|.+|+-.+++.+..+.+....|.|+. ..|--.. ||+.+-|..|+||-..+.
T Consensus 392 N~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE--pHP~~Pv-LAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 392 NSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE--PHPHLPV-LASSGIDHDVKIWTPLTA 468 (559)
T ss_pred cccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC--CCCCCch-hhccCCccceeeecCCcc
Confidence 3 5888999999999999999999999999999999999999888999998 7777776 999999999999987544
Q ss_pred e
Q 002782 432 C 432 (882)
Q Consensus 432 ~ 432 (882)
.
T Consensus 469 e 469 (559)
T KOG1334|consen 469 E 469 (559)
T ss_pred c
Confidence 3
No 203
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.72 E-value=5e-14 Score=147.99 Aligned_cols=327 Identities=17% Similarity=0.152 Sum_probs=203.0
Q ss_pred CEEEEEe--CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEE
Q 002782 32 SFIACAC--GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA 109 (882)
Q Consensus 32 ~~la~~~--~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~ 109 (882)
+++++.. .+.|.+.|..+.+.+..+......-..++|+|||+++.+++.||.|.++|+.+++.+.+++... ...+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 4444444 4589999999999999998765554567899999999999999999999999999999998654 457899
Q ss_pred EcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeecC-------CCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEE
Q 002782 110 CHPSGGLLATAG-ADRKVLVWDVDGGFCTHYFKGH-------KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 181 (882)
Q Consensus 110 fs~~~~~lasg~-~dg~v~vwd~~~~~~~~~~~~h-------~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~ 181 (882)
+|+||++++++. .++.+.|+|.++.+.+..+... ...+..+..+|... .++++.-+.+.|.+-|....+.+
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEETTTTEEEEEETTTSSCE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EEEEEEccCCeEEEEEecccccc
Confidence 999999998876 6799999999999998887632 34678888888744 34555555688888898765533
Q ss_pred E-EecCcccceEEEEEccCCCEEEEE-eCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhcc
Q 002782 182 A-TLDKHFSRVTSMAITSDGSTLISA-GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK 259 (882)
Q Consensus 182 ~-~l~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (882)
. .............|+|++++++.+ ..++.|-++|..+.+....+........
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~------------------------- 218 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHP------------------------- 218 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEE-------------------------
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccc-------------------------
Confidence 2 222233456788999999987765 4677899999887765543322110000
Q ss_pred ccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccc
Q 002782 260 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 339 (882)
Q Consensus 260 ~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 339 (882)
.. ..-..+|... .+|....
T Consensus 219 ---------------------------------------------~~-~~~~php~~g-----------~vw~~~~---- 237 (369)
T PF02239_consen 219 ---------------------------------------------GP-GANFPHPGFG-----------PVWATSG---- 237 (369)
T ss_dssp ---------------------------------------------TT-EEEEEETTTE-----------EEEEEEB----
T ss_pred ---------------------------------------------cc-cccccCCCcc-----------eEEeecc----
Confidence 00 0000001000 0111100
Q ss_pred cceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEE---
Q 002782 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT--- 416 (882)
Q Consensus 340 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~--- 416 (882)
.+...+..-....+.+|+..+.+.+..+...... ..+. .+|+++++.+.
T Consensus 238 -------------------------~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~--thP~s~~vwvd~~~ 289 (369)
T PF02239_consen 238 -------------------------LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK--THPDSRYVWVDTFL 289 (369)
T ss_dssp -------------------------SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE----TT-SEEEEE-TT
T ss_pred -------------------------ccceecccccCCccccchhhcCeEEEEEECCCCc-ceee--cCCCCccEEeeccC
Confidence 1111212222245667888888888888877666 5555 78999984444
Q ss_pred eecCCeEEEEeCCCceEEeeeeccc-ccEEEEEEccCCCcEEEEeeCCC-eEEEEecCCC
Q 002782 417 GSKDNSVRLWDSESRCCVGVGTGHM-GAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGL 474 (882)
Q Consensus 417 ~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~s~~~~~~l~s~~~dg-~i~~wd~~~~ 474 (882)
+...++|.++|..+.+.+..+.... ..+..+.|+++|....+|.-..+ .|.+||..+.
T Consensus 290 ~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 290 NPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp -SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred CCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 3566899999999987776664332 35889999999998777776655 8999998765
No 204
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.8e-17 Score=161.07 Aligned_cols=301 Identities=23% Similarity=0.275 Sum_probs=233.8
Q ss_pred eeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeee-eCCCcceEEeeeeeecCCCEEEEEeecC
Q 002782 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKD 420 (882)
Q Consensus 342 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~d 420 (882)
.+.+...+.+|.+.+..+.|.. .+..+++++.+..+.+||..++.....+ .+|...|....+..+.+... +++++.|
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~t-i~~~s~d 208 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRT-IVTSSRD 208 (559)
T ss_pred HhhhhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcC-ceecccc
Confidence 4455667888999999999987 7889999999999999999888776554 47888887777445555666 9999999
Q ss_pred CeEEEEeCCC-ceEE--eeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC--
Q 002782 421 NSVRLWDSES-RCCV--GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK-- 495 (882)
Q Consensus 421 g~i~iwd~~~-~~~~--~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-- 495 (882)
|.+++-.+.. +.+. ..+..|.++|..++.-|+...-|.+++.|+.+.-+|+....... .......+..
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~-------~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE-------KFVCREADEKER 281 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc-------eeeeeccCCccc
Confidence 9999976543 3222 34557999999999999999899999999999999988653211 1112222333
Q ss_pred -CeeEEEEcCCC-cEEEEEcCCCcEEEEeCCCcee------EEEEec------ccCceEEEEEcCCCCEEEEeeCCCcEE
Q 002782 496 -DINSLAVAPND-SLVCTGSQDRTACVWRLPDLVS------VVTFRG------HKRGIWSVEFSPVDQVVITASGDKTIK 561 (882)
Q Consensus 496 -~i~~~~~s~~~-~~la~~s~dg~i~iwd~~~~~~------~~~~~~------h~~~v~~l~~s~~~~~l~s~~~d~~i~ 561 (882)
....++..|.. ..+|+|+.|-.+++||.+.... +..+-. ..-.|++++|+.++.-|+++..|-.|+
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 56788999965 4899999999999999864322 222222 234699999998888888888899999
Q ss_pred EEecC--CC----------ceeeE-eecCcC--CEEEEEE-EeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEE
Q 002782 562 IWSIS--DG----------SCLKT-FEGHTS--SVLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 625 (882)
Q Consensus 562 iwd~~--~~----------~~~~~-~~~h~~--~v~~~~~-s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 625 (882)
++.-. .| ..++. ++||.+ .|..+-| -|...|+++|+.-|.|.||+-++++.+..+.+...-|+|
T Consensus 362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNC 441 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNC 441 (559)
T ss_pred EeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEec
Confidence 99532 23 22333 788875 4666765 578899999999999999999999999988887779999
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782 626 LAVGKKTEMFATGGSDALVNLWHDST 651 (882)
Q Consensus 626 l~~s~~~~~l~s~~~dg~i~iw~~~~ 651 (882)
|.-+|--..||++|-|..|+||--.+
T Consensus 442 LEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 442 LEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cCCCCCCchhhccCCccceeeecCCc
Confidence 99999999999999999999997543
No 205
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.2e-14 Score=152.41 Aligned_cols=471 Identities=14% Similarity=0.121 Sum_probs=289.5
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCC------------CEEEEEeCCCcEEE
Q 002782 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG------------GLLATAGADRKVLV 128 (882)
Q Consensus 61 ~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~------------~~lasg~~dg~v~v 128 (882)
..-.++.|+|.| ++|-|+. ..|.+-|..+.+.+.++.-|...|+.+.|.|-. -+||++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 346788999988 4566654 589999999999999999999999999997721 25677777899999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEecC--CCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEcc-CCCEEEE
Q 002782 129 WDVDGGFCTHYFKGHKGVVSSILFHPD--TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLIS 205 (882)
Q Consensus 129 wd~~~~~~~~~~~~h~~~V~~l~f~~~--~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~-~~~~l~s 205 (882)
||...+..+..+..|..++..++|.+. ..+.+|+.-....+|.+|+..+|+.+...........++.+.| |.+.+..
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 999999999899999999999999764 2335677777788999999999998887776666777888888 5566666
Q ss_pred EeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCce
Q 002782 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285 (882)
Q Consensus 206 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~ 285 (882)
.+..|.+.+-+.-..+.. ..+...+....+.+..
T Consensus 174 l~s~g~vl~~~~l~~sep-----~~pgk~~qI~sd~Sdl----------------------------------------- 207 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEP-----DVPGKEFQITSDHSDL----------------------------------------- 207 (1062)
T ss_pred EccCceEEEEeccCCCCC-----CCCceeEEEecCccch-----------------------------------------
Confidence 677776666543221100 0000000000000000
Q ss_pred eeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCC
Q 002782 286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE 365 (882)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 365 (882)
......+.+.+ ..+. ......+. .....++|+|.-
T Consensus 208 -----------------------------~~lere~at~n-------s~ts------~~~sa~fi---ty~a~faf~p~~ 242 (1062)
T KOG1912|consen 208 -----------------------------AHLERETATGN-------STTS------TPASAYFI---TYCAQFAFSPHW 242 (1062)
T ss_pred -----------------------------hhhhhhhhccc-------cccC------CCcchhHH---HHHHhhhcChhh
Confidence 00000000000 0000 00000000 001234556655
Q ss_pred CcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc--------------
Q 002782 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-------------- 431 (882)
Q Consensus 366 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------------- 431 (882)
.+++..... ..+.++|++-..+.....-..+.+.-+++...+.... +++...||.+.+|-....
T Consensus 243 rn~lfi~~p-rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~-LfclH~nG~ltirvrk~~~~~f~~~~~~l~~d 320 (1062)
T KOG1912|consen 243 RNILFITFP-RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA-LFCLHSNGRLTIRVRKEEPTEFKKPNASLSMD 320 (1062)
T ss_pred hceEEEEec-cceEEEcchhhceeEEEEeccCCcceeEeccCCCcce-EEEEecCCeEEEEEeeccCccccccchhhccc
Confidence 555555554 6788899888888777776666666666334444444 888999999999964431
Q ss_pred --eEEeeee-cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCC---
Q 002782 432 --CCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--- 505 (882)
Q Consensus 432 --~~~~~~~-~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--- 505 (882)
....... ..+-.....+..|..++.++.--.+|.+.+|.+..+........ .....+..+.|.-.
T Consensus 321 l~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s---------~~iel~~pf~f~~~~~~ 391 (1062)
T KOG1912|consen 321 LGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRS---------SSIELVLPFDFNLSTKL 391 (1062)
T ss_pred cccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccc---------ccccccccccccCceee
Confidence 1111110 11112222333444344455556778889999875421110000 00001111111111
Q ss_pred --CcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEc-----------CCC-------CEEEEeeCCCcEEEEec
Q 002782 506 --DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS-----------PVD-------QVVITASGDKTIKIWSI 565 (882)
Q Consensus 506 --~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-----------~~~-------~~l~s~~~d~~i~iwd~ 565 (882)
...+..-+.|| +|..+.++.... |.+ .++|.|...|+|.++|+
T Consensus 392 v~k~~l~~LS~dg-----------------~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv 454 (1062)
T KOG1912|consen 392 VGKTSLISLSDDG-----------------SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV 454 (1062)
T ss_pred hhhccccchhhcC-----------------CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence 11222333343 122222222211 212 37889999999999999
Q ss_pred CCCceeeEeecCcCCEEEEEEEeCCCEEEE---------eecCCeEEEEEcCCCeeEE--Eec-cCCCceEEEEEcCCCC
Q 002782 566 SDGSCLKTFEGHTSSVLRASFLTRGAQIVS---------CGADGLVKLWTVRTGECIA--TYD-KHEDKIWALAVGKKTE 633 (882)
Q Consensus 566 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s---------~~~dg~i~iwd~~~~~~~~--~~~-~h~~~v~~l~~s~~~~ 633 (882)
.++...+.|..|...|.++.|.....++-. ++.-+.+.+-|+++|.... -++ ..+.+|..+..|..|+
T Consensus 455 st~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~ 534 (1062)
T KOG1912|consen 455 STNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGR 534 (1062)
T ss_pred cchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCc
Confidence 999999999999999999999866544322 2223457888999986443 223 3458899999999999
Q ss_pred EEEEEeCCCCEEEEECCCH
Q 002782 634 MFATGGSDALVNLWHDSTA 652 (882)
Q Consensus 634 ~l~s~~~dg~i~iw~~~~~ 652 (882)
||+..-.|.-+.+||+.+-
T Consensus 535 yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 535 YLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred eEEEEecccchHHHhhccc
Confidence 9999999999999998554
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.6e-16 Score=159.77 Aligned_cols=166 Identities=23% Similarity=0.432 Sum_probs=136.1
Q ss_pred eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-ecCCCCEEEEEEcC--CCCEEEEEeCCCcEEE
Q 002782 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHP--SGGLLATAGADRKVLV 128 (882)
Q Consensus 52 ~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~-~~h~~~V~~l~fs~--~~~~lasg~~dg~v~v 128 (882)
+.+.|.||++.|.|++|+.||.+|++|+.|-.+.|||.-..++++.+ .||.+.|.++.|-| ++..+++|+.|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45678999999999999999999999999999999999988888887 57999999999999 5568899999999999
Q ss_pred EECCC----------CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe-E------EEEe---cCcc
Q 002782 129 WDVDG----------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-C------VATL---DKHF 188 (882)
Q Consensus 129 wd~~~----------~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~-~------~~~l---~~h~ 188 (882)
+|+.. ...++.+..|...|..++-.|++. ..+.+++.||+|+-+|+.... | ...+ ....
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99974 234556678999999999998863 569999999999999997632 1 1111 1122
Q ss_pred cceEEEEEccCC-CEEEEEeCCCeEEEEecC
Q 002782 189 SRVTSMAITSDG-STLISAGRDKVVNLWDLR 218 (882)
Q Consensus 189 ~~v~~l~~s~~~-~~l~s~~~dg~i~vwd~~ 218 (882)
-...++.++|.. .+|+.|+.|--.++||.+
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 356788899865 578889999999999953
No 207
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=2.5e-14 Score=133.13 Aligned_cols=291 Identities=18% Similarity=0.268 Sum_probs=204.0
Q ss_pred eeEEEeecCCCCEEEEEEcC---CCCEEEEEeC----CCcEEEEEC--CCCeEEEEe-ecCCCcEEEEEEecCCCc---c
Q 002782 93 KCLRSWKGHDGPAIGMACHP---SGGLLATAGA----DRKVLVWDV--DGGFCTHYF-KGHKGVVSSILFHPDTDK---S 159 (882)
Q Consensus 93 ~~~~~~~~h~~~V~~l~fs~---~~~~lasg~~----dg~v~vwd~--~~~~~~~~~-~~h~~~V~~l~f~~~~~~---~ 159 (882)
+.+..+..+ -++.++.|+. ...+||.|+. .+.|.|-.+ ++++.+..- ..|..+++.+.|.|+... .
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 444555543 6788888884 3347888872 355655544 455544322 258999999999998631 2
Q ss_pred EEEEEeCCCcEEEEECCC--Ce--EEEEe-----cCcccceEEEEEcc-CCCEEEEEeCCCeEEEEecCCceeeeeecCc
Q 002782 160 LLFSGSDDATVRVWDLLA--KK--CVATL-----DKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTVPTY 229 (882)
Q Consensus 160 ~l~sgs~dg~I~vwd~~~--~~--~~~~l-----~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 229 (882)
+|++. . ..+|+|.+.. .+ +...+ ..+.++++++.|+. +-+++.+++-|-+..+||+.++.
T Consensus 115 lLATs-~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-------- 184 (364)
T KOG0290|consen 115 LLATS-S-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-------- 184 (364)
T ss_pred hhhcc-c-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc--------
Confidence 34443 3 3599999873 22 11112 23456899999986 56788889999999999987541
Q ss_pred ceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeE
Q 002782 230 EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTA 309 (882)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (882)
T Consensus 185 -------------------------------------------------------------------------------- 184 (364)
T KOG0290|consen 185 -------------------------------------------------------------------------------- 184 (364)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceee
Q 002782 310 ATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS 389 (882)
Q Consensus 310 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 389 (882)
......++..|..+|.+++|.....+.+++.+.||.+++||+......
T Consensus 185 --------------------------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 185 --------------------------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred --------------------------------ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence 001123556788999999999988899999999999999999877655
Q ss_pred eeeeC---CCcceEEeeeeeecCCCEEEEEeecC-CeEEEEeCCC-ceEEeeeecccccEEEEEEccCCCcEEEEeeCCC
Q 002782 390 YVLAG---HSEIVLCLDTCALSSGKILIVTGSKD-NSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 464 (882)
Q Consensus 390 ~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg 464 (882)
..+.. ...+...++ +.+.+..++++-..| ..|.|.|++. ...+..+.+|.+.|.+++|.|.....+++++.|.
T Consensus 233 TIIYE~p~~~~pLlRLs--wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLS--WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred eEEecCCCCCCcceeec--cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence 44432 244566666 666666657765544 5788999886 4577889999999999999999988999999999
Q ss_pred eEEEEecCCCCC-CCCCcccccchhhhhhcCCCeeEEEEcC-CCcEEEEEcC
Q 002782 465 TIKVWSFDGLSD-DAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 514 (882)
Q Consensus 465 ~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s~ 514 (882)
.+-+||+..... .... +. .....+..|+.+.|++ .+..++.+..
T Consensus 311 qaliWDl~q~~~~~~~d-----Pi-lay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 311 QALIWDLQQMPRENGED-----PI-LAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred eEEEEecccccccCCCC-----ch-hhhhccceeeeeeecccCCCEEEEEec
Confidence 999999987643 1111 11 1122567899999996 5678887764
No 208
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.2e-13 Score=140.64 Aligned_cols=378 Identities=19% Similarity=0.237 Sum_probs=230.7
Q ss_pred EEEEEeCCeEEEEEcCCCceeeeecCC---CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEE
Q 002782 33 FIACACGESINIVDLSNASIKSTIEGG---SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA 109 (882)
Q Consensus 33 ~la~~~~~~I~i~d~~~~~~~~~l~~~---~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~ 109 (882)
.+++-+...+.+|...........-.+ ..+....++|++|+++|.+. +..+.|++..++..+.+.... .+.++.
T Consensus 4 ~~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~ 80 (566)
T KOG2315|consen 4 VYAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLL 80 (566)
T ss_pred eEEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeee
Confidence 345555667888887654433322222 44578899999999888765 468999999998655444432 899999
Q ss_pred EcCCCCEEEEEe-----C-----CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe
Q 002782 110 CHPSGGLLATAG-----A-----DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (882)
Q Consensus 110 fs~~~~~lasg~-----~-----dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~ 179 (882)
|||-|.+|.+-- . .-.+.+|+++++.....+......-++..|++|.. +++--..+.+.+|++.+.+
T Consensus 81 fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~ 157 (566)
T KOG2315|consen 81 FSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFK 157 (566)
T ss_pred ecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchh---hhhhhhcceEEEEecCCcc
Confidence 999999998731 1 24578999999665555543333337899999865 5555556789999988743
Q ss_pred EEEEecCcccceEEEEEccCCC--EEEE-----EeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccch
Q 002782 180 CVATLDKHFSRVTSMAITSDGS--TLIS-----AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 252 (882)
Q Consensus 180 ~~~~l~~h~~~v~~l~~s~~~~--~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (882)
.+ .-.-|...|+.+.+||.+. .+++ .|.-+.|++|..........+... .|
T Consensus 158 ~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~k------sF--------------- 215 (566)
T KOG2315|consen 158 TI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANK------SF--------------- 215 (566)
T ss_pred ce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhc------cc---------------
Confidence 22 2233667889999998743 2222 233345555544311100000000 00
Q ss_pred hhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEE
Q 002782 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (882)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 332 (882)
.-.|.
T Consensus 216 ---------------------------------------------------------------------Fkadk------ 220 (566)
T KOG2315|consen 216 ---------------------------------------------------------------------FKADK------ 220 (566)
T ss_pred ---------------------------------------------------------------------cccce------
Confidence 00000
Q ss_pred ecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCE
Q 002782 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412 (882)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 412 (882)
..+.|...+..+|+.++. | +...+.
T Consensus 221 ------------------------vqm~WN~~gt~LLvLast-------d-----------------------VDktn~- 245 (566)
T KOG2315|consen 221 ------------------------VQMKWNKLGTALLVLAST-------D-----------------------VDKTNA- 245 (566)
T ss_pred ------------------------eEEEeccCCceEEEEEEE-------e-----------------------ecCCCc-
Confidence 111111111112222111 0 111111
Q ss_pred EEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEe-eCCCeEEEEecCCCCCCCCCcccccchhhhh
Q 002782 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (882)
Q Consensus 413 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 491 (882)
+-....++++.+++...+ ..--...++|.++.|++++..+.++- -.--++.++|++.. ....
T Consensus 246 ---SYYGEq~Lyll~t~g~s~-~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-------------~v~d 308 (566)
T KOG2315|consen 246 ---SYYGEQTLYLLATQGESV-SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-------------PVFD 308 (566)
T ss_pred ---cccccceEEEEEecCceE-EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-------------EeEe
Confidence 111233555666552222 22233578999999999998765544 45678889988743 2333
Q ss_pred hcCCCeeEEEEcCCCcEEEEEcCC---CcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC------CCcEEE
Q 002782 492 AHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG------DKTIKI 562 (882)
Q Consensus 492 ~~~~~i~~~~~s~~~~~la~~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~------d~~i~i 562 (882)
-..++-+++-|+|.|++++.++-+ |.+-+||+.+.+++..+... .-+-+.|+|||++++|+.. |+.++|
T Consensus 309 f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Ki 386 (566)
T KOG2315|consen 309 FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKI 386 (566)
T ss_pred CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEE
Confidence 345677899999999999987754 78999999998888887753 3456899999999999876 678999
Q ss_pred EecCCCceeeEeecCcCCEEEEEEEeC
Q 002782 563 WSISDGSCLKTFEGHTSSVLRASFLTR 589 (882)
Q Consensus 563 wd~~~~~~~~~~~~h~~~v~~~~~s~~ 589 (882)
|+. +|..+....-. .....+.|-|.
T Consensus 387 why-tG~~l~~~~f~-sEL~qv~W~P~ 411 (566)
T KOG2315|consen 387 WHY-TGSLLHEKMFK-SELLQVEWRPF 411 (566)
T ss_pred EEe-cCceeehhhhh-HhHhheeeeec
Confidence 997 56555432211 15667778764
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=1.6e-13 Score=144.16 Aligned_cols=324 Identities=15% Similarity=0.084 Sum_probs=203.3
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecC
Q 002782 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239 (882)
Q Consensus 160 ~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 239 (882)
++++-..+|.|.+.|..+.+.+..+......-..+.|+|||++++++++||.|.++|+.+.+.+.+++.......+.+
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~-- 85 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV-- 85 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE--
Confidence 456667889999999999999999976655455678999999999999999999999999887776655443333333
Q ss_pred CCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcE
Q 002782 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319 (882)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (882)
T Consensus 86 -------------------------------------------------------------------------------- 85 (369)
T PF02239_consen 86 -------------------------------------------------------------------------------- 85 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEE-EcCCcEEEEeCCCceeeeeeeCC---
Q 002782 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA-TNIEQVQVYDLSSMSCSYVLAGH--- 395 (882)
Q Consensus 320 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~~~--- 395 (882)
++ ++++++++ ...+.+.++|..+.+.+..+...
T Consensus 86 ------------------------------------------s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~ 122 (369)
T PF02239_consen 86 ------------------------------------------SP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP 122 (369)
T ss_dssp ---------------------------------------------TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred ------------------------------------------cC-CCCEEEEEecCCCceeEeccccccceeeccccccc
Confidence 22 33344433 34677888888887777766533
Q ss_pred ----CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEe-eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEe
Q 002782 396 ----SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (882)
Q Consensus 396 ----~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd 470 (882)
...+..+. .++....++++--+.+.|.+.|+.....+. .............|+|+++.++++...+..|-++|
T Consensus 123 ~~~~~~Rv~aIv--~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 123 VDGPESRVAAIV--ASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp TTTS---EEEEE--E-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred ccccCCCceeEE--ecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence 23445554 667777645555556888888987654332 22233455677899999987777777788999999
Q ss_pred cCCCCCCCCCcccccchhhhhhcCCCeeEEE-------E--cCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEE
Q 002782 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLA-------V--APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541 (882)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------~--s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 541 (882)
..+...... ...-...|..+...+- | ...+...++.-....+.+||..+.+.+..+.....+ .-
T Consensus 201 ~~~~k~v~~------i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lF 273 (369)
T PF02239_consen 201 TKTGKLVAL------IDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LF 273 (369)
T ss_dssp TTTTEEEEE------EE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---
T ss_pred eccceEEEE------eeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ce
Confidence 775421100 0000112222222221 1 222333322223345678999999999999987777 78
Q ss_pred EEEcCCCCEEEEe----eCCCcEEEEecCCCceeeEeecCc-CCEEEEEEEeCCCEEEEeecC--CeEEEEEcCCCeeEE
Q 002782 542 VEFSPVDQVVITA----SGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRGAQIVSCGAD--GLVKLWTVRTGECIA 614 (882)
Q Consensus 542 l~~s~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~d--g~i~iwd~~~~~~~~ 614 (882)
+..+|+++++.+. ...++|.++|..+.+.+.++.... ..+..+.|+++|+++..+..+ |.|.+||.++.+.+.
T Consensus 274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 8889999999998 455899999999998888775332 358899999999987555443 379999999999998
Q ss_pred Eec
Q 002782 615 TYD 617 (882)
Q Consensus 615 ~~~ 617 (882)
.+.
T Consensus 354 ~i~ 356 (369)
T PF02239_consen 354 RIP 356 (369)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 210
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=9.4e-14 Score=147.17 Aligned_cols=244 Identities=13% Similarity=0.200 Sum_probs=155.9
Q ss_pred eEEEEEeCCCCcEEEEE-EcCCcEEEEeCC-Ccee--eeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC-
Q 002782 356 ILDLKFLGEEEQYLAVA-TNIEQVQVYDLS-SMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES- 430 (882)
Q Consensus 356 i~~~~~~~~~~~~l~~~-~~~~~i~i~d~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~- 430 (882)
...+.++| ++++|+++ ..++.|.+|++. ++.. ..... ..+....+. ++|+++.++++...++.|.+|++.+
T Consensus 37 ~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~--~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 37 VQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS--TDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE--ECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 34455555 55555544 446888888886 3322 11121 222344555 8899998666666789999999864
Q ss_pred ce---EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCc
Q 002782 431 RC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507 (882)
Q Consensus 431 ~~---~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 507 (882)
+. .+.... +.....+++++|+++.++++...++.|.+||+.......... ..............++|+|+|+
T Consensus 113 g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~----~~~~~~~~g~~p~~~~~~pdg~ 187 (330)
T PRK11028 113 GIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE----PAEVTTVEGAGPRHMVFHPNQQ 187 (330)
T ss_pred CCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC----CCceecCCCCCCceEEECCCCC
Confidence 22 222222 223466788999998666777788999999997532100000 0000011234467899999999
Q ss_pred EEEEEcC-CCcEEEEeCCC--c--eeEEEEecc------cCceEEEEEcCCCCEEEEeeC-CCcEEEEecCCCceeeEee
Q 002782 508 LVCTGSQ-DRTACVWRLPD--L--VSVVTFRGH------KRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTFE 575 (882)
Q Consensus 508 ~la~~s~-dg~i~iwd~~~--~--~~~~~~~~h------~~~v~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~ 575 (882)
+++++.. +++|.+|++.. + +.+..+..+ ......+.|+|++++++++.. ++.|.+|++.......++.
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence 9988776 89999999973 2 333343322 112346889999999998854 7899999996543222222
Q ss_pred cCc---CCEEEEEEEeCCCEEEEeec-CCeEEEEEcC
Q 002782 576 GHT---SSVLRASFLTRGAQIVSCGA-DGLVKLWTVR 608 (882)
Q Consensus 576 ~h~---~~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~ 608 (882)
++. .....+.|+|+|++|+++.. ++.|.+|+++
T Consensus 268 ~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 268 GHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 221 24457899999999988776 8899999874
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=2.1e-14 Score=138.56 Aligned_cols=229 Identities=11% Similarity=0.213 Sum_probs=167.9
Q ss_pred eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCC--CeEEEEecCCCCCCCCCccc
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMN 483 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~ 483 (882)
+..+.. ++..|+.||. ++|+................|--+-|+.. +++..+.+ +.+++.++....
T Consensus 13 ~Nqd~~-~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~-------- 79 (391)
T KOG2110|consen 13 FNQDST-LLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT-------- 79 (391)
T ss_pred ecccee-EEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc--------
Confidence 444444 3778888874 66766543332222233345666667654 45555444 448888876431
Q ss_pred ccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec---ccCceEEEEEcCCCCEEEEee--CCC
Q 002782 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITAS--GDK 558 (882)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~--~d~ 558 (882)
.........+|.++.+.. +.|++.-.+ .|+|||+.+.+.+.++.. +..++.++.+++.+.+|+.-+ ..|
T Consensus 80 ---~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 80 ---TICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred ---eEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 111112345677777754 455555544 499999999999888764 455677777777777888643 468
Q ss_pred cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCC-eEEEEEcCCCeeEEEeccC--CCceEEEEEcCCCCEE
Q 002782 559 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG-LVKLWTVRTGECIATYDKH--EDKIWALAVGKKTEMF 635 (882)
Q Consensus 559 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-~i~iwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l 635 (882)
.|.+||+.+-+.+..+..|.+++.+++|+++|.+|||++..| .|||+.+.+|+.+.+|..- .-.|.+++|+||+++|
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 899999999999999999999999999999999999999999 5799999999999999732 3568899999999999
Q ss_pred EEEeCCCCEEEEECCCHH
Q 002782 636 ATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 636 ~s~~~dg~i~iw~~~~~~ 653 (882)
++.+..++|.+|++....
T Consensus 234 ~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEecCCCeEEEEEecccc
Confidence 999999999999988643
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=1.6e-14 Score=159.35 Aligned_cols=357 Identities=19% Similarity=0.248 Sum_probs=217.5
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC-------eEEEEecCcccceEEEEEccCCC
Q 002782 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-------KCVATLDKHFSRVTSMAITSDGS 201 (882)
Q Consensus 129 wd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~-------~~~~~l~~h~~~v~~l~~s~~~~ 201 (882)
|++ .|..+..+..|...|..++.+++. ..++++||.||+|++||+..- ++..++....+.+..+.+.+.+.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 554 467788888999999999998764 357999999999999998531 23334444567888999999999
Q ss_pred EEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEEC
Q 002782 202 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281 (882)
Q Consensus 202 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~ 281 (882)
.++.++.||.|.+.+++.....+..... +++
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~----------------------------------------------~ri--- 1142 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQ----------------------------------------------VRI--- 1142 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeee----------------------------------------------eec---
Confidence 9999999999999988653111000000 000
Q ss_pred CCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEE-EE
Q 002782 282 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD-LK 360 (882)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~ 360 (882)
|+. . ..+.+.+ -+
T Consensus 1143 --------------------------------~n~---------------------------------~-~~g~vv~m~a 1156 (1431)
T KOG1240|consen 1143 --------------------------------PNL---------------------------------K-KDGVVVSMHA 1156 (1431)
T ss_pred --------------------------------ccc---------------------------------c-CCCceEEeec
Confidence 000 0 0011111 12
Q ss_pred EeCCCCc-EEEEEEcCCcEEEEeCCCceeeeeee--CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeee
Q 002782 361 FLGEEEQ-YLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 437 (882)
Q Consensus 361 ~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 437 (882)
|...... .++.++..+.|..||+........++ ...+.|+++. ..|.+.+ +++|+..|.+.+||++-+.++...
T Consensus 1157 ~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~--idp~~~W-lviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1157 FTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV--IDPWCNW-LVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred ccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE--ecCCceE-EEEecCCceEEEEEeecCceeecc
Confidence 2222333 77888888999999998776655443 4557788887 8888887 999999999999999988777664
Q ss_pred e-cccccEEEEEEccCCC--cEEEEee--CCCeEEEEecCCCCCCCC-----Ccccccchhhh----hhcCCCeeEEEEc
Q 002782 438 T-GHMGAVGAVAFSKKLQ--NFLVSGS--SDHTIKVWSFDGLSDDAE-----QPMNLKAKAVV----AAHGKDINSLAVA 503 (882)
Q Consensus 438 ~-~~~~~v~~v~~s~~~~--~~l~s~~--~dg~i~~wd~~~~~~~~~-----~~~~~~~~~~~----~~~~~~i~~~~~s 503 (882)
. .+..++..+..+|-.+ ...++++ ..+.|.+|++.++..... ....+...... ..+.-......+.
T Consensus 1234 ~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1234 EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC 1313 (1431)
T ss_pred cCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc
Confidence 4 4557788887776544 3444444 578899999987632110 00000000000 1222233344454
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCceeE-EEEecccCceEEEEEcCCCCEEEEeeCCCcEEE-EecCCC-----ceee----
Q 002782 504 PNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKI-WSISDG-----SCLK---- 572 (882)
Q Consensus 504 ~~~~~la~~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~i-wd~~~~-----~~~~---- 572 (882)
..+..+.+|+.|..|+.||....... ....+..........+. +.-++.++.--...+ .....+ ....
T Consensus 1314 ~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~-~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~ 1392 (1431)
T KOG1240|consen 1314 EKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY-DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRP 1392 (1431)
T ss_pred cCCceeeecCCccceeeccCCCcccccccccCccccccccchhc-cccccCCCccchhhhhhhhhcCchhhccccccccc
Confidence 55668899999999999998765443 22222222233333322 122222221100000 000000 0011
Q ss_pred ----EeecCcCCEEEEEEEeC-CCEEEEeecCCeEEEEE
Q 002782 573 ----TFEGHTSSVLRASFLTR-GAQIVSCGADGLVKLWT 606 (882)
Q Consensus 573 ----~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~iwd 606 (882)
.-..|..+|+.+++... ..+|++++.||.|+||.
T Consensus 1393 ~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1393 GPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 11258889999988654 45889999999999993
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=4.8e-14 Score=135.35 Aligned_cols=302 Identities=21% Similarity=0.218 Sum_probs=187.6
Q ss_pred ceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCC-CccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC----ee--
Q 002782 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGG-SDTITALALSPDD-KLLFSSGHSREIRVWDLSTL----KC-- 94 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~-~~~I~~l~~spd~-~~las~~~dg~i~iwd~~~~----~~-- 94 (882)
-+||++--.-+|++..+ .|+|||-.. .....++.. ...|+|++|-|.+ +-|++|.. +-|.+|..... ..
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~ 180 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIR 180 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccc
Confidence 47777754445555544 899999766 555556543 4579999999965 56777776 46999987421 11
Q ss_pred --------EEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEe
Q 002782 95 --------LRSWKGHDGPAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (882)
Q Consensus 95 --------~~~~~~h~~~V~~l~fs~~~~~lasg~-~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs 165 (882)
+..-++| .+|++|.|.+||..|++++ .|..|.|||++++..+.......+.++-+.|+||++. |++++
T Consensus 181 ~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~--lfaAt 257 (445)
T KOG2139|consen 181 MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV--LFAAT 257 (445)
T ss_pred cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE--EEEec
Confidence 1122345 7999999999999999988 5688999999999877666556788999999999876 99999
Q ss_pred CCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcc
Q 002782 166 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245 (882)
Q Consensus 166 ~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (882)
-|+..++|+..............+.|...+|+|+|++|+.++. |.=++|.+.-............+..+..
T Consensus 258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~ll-------- 328 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLL-------- 328 (445)
T ss_pred ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeee--------
Confidence 9999999965443322223333458999999999998776653 3334454432111111100111111111
Q ss_pred cccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeC
Q 002782 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (882)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (882)
+-|+..- .......-...+...+++.|.+.++++....
T Consensus 329 --------------------------------iaDL~e~----------ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 329 --------------------------------IADLQEV----------TICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred --------------------------------eccchhh----------hhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 1111000 0000001112556778889999999887766
Q ss_pred Ce--------EEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeC
Q 002782 326 QQ--------LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383 (882)
Q Consensus 326 ~~--------i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~ 383 (882)
+. +..|+.... ...++.......+......+..+.-.++.+|.++-+.|.+.-|++
T Consensus 367 ~~~v~~~k~~i~~fdtr~s--p~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 367 QSFVLLCKLHISRFDTRKS--PPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred Cchhhhhhhhhhhhccccc--CceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 55 333443322 222333334444444444455555567778888888788877765
No 214
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.66 E-value=3.6e-13 Score=147.15 Aligned_cols=225 Identities=17% Similarity=0.263 Sum_probs=167.4
Q ss_pred CEEEEEeCCeEEEEEcCCCceeeee------cCC----------CccEEEEEE-------------------------cC
Q 002782 32 SFIACACGESINIVDLSNASIKSTI------EGG----------SDTITALAL-------------------------SP 70 (882)
Q Consensus 32 ~~la~~~~~~I~i~d~~~~~~~~~l------~~~----------~~~I~~l~~-------------------------sp 70 (882)
.||.++.+..|.+||+..+..+..+ +.| ..-|++..+ .-
T Consensus 18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~~~~s~wi~g~~l~~ 97 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQIIERFSDWIFGAKLFE 97 (967)
T ss_pred ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhhhhhccccccccchhh
Confidence 7899999999999999887644322 223 112333333 23
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc
Q 002782 71 DDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG----PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146 (882)
Q Consensus 71 d~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~----~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~ 146 (882)
+.+.++.++.++.+.+||+..+........... ...-+.++++.-++++|+.-+.|.+|++.....-..+.||.+.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 457788888889999999988877766553221 2233456778889999999999999999754444478999999
Q ss_pred EEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEE-EecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeee
Q 002782 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA-TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 225 (882)
Q Consensus 147 V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~-~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 225 (882)
|..+.|+.|+.+ +++.|+|.++++|++++++... +.-+|+..|+.++|.|. .+++++.|-+.++|+....+.. .
T Consensus 178 iF~i~~s~dg~~--i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~ 252 (967)
T KOG0974|consen 178 IFSIVTSLDGRY--IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-V 252 (967)
T ss_pred eEEEEEccCCcE--EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh-h
Confidence 999999998766 9999999999999999998776 77899999999999998 9999999999999966543322 1
Q ss_pred ecC--cceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCc
Q 002782 226 VPT--YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (882)
Q Consensus 226 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~ 284 (882)
+.. ...+..+...+ .....+++|.||.+++|+....
T Consensus 253 y~~h~g~~iw~~~~~~-----------------------~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 253 YDEHSGKGIWKIAVPI-----------------------GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hhhhhhcceeEEEEcC-----------------------CceEEEeeccCcchhhhhhhcc
Confidence 111 11222222221 2357899999999999998654
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=9.7e-15 Score=159.33 Aligned_cols=235 Identities=16% Similarity=0.191 Sum_probs=164.7
Q ss_pred CCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeec---CCeEEEEeCCCceE--EeeeecccccEEEEEE
Q 002782 375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLWDSESRCC--VGVGTGHMGAVGAVAF 449 (882)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~ 449 (882)
+..|.+||..... ...+..|...+.... ++|+|+. ++..+. +..|++||+.++.. +..+.+| ...++|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~--wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPA--WSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAF 255 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccce--EcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeE
Confidence 3689999986655 445677777888888 9999998 454443 24799999988754 3323333 346899
Q ss_pred ccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEc-CCCcEEEEeCCCc-e
Q 002782 450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDL-V 527 (882)
Q Consensus 450 s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s-~dg~i~iwd~~~~-~ 527 (882)
+|+|+.++++.+.+|.+.+|.++.... ....+..+...+.+..|+|||+.|+.++ .++...||+++.. .
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGG---------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCC---------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 999985555556788777765442211 1112233555678899999999777554 5778888876432 2
Q ss_pred eEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEc
Q 002782 528 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (882)
Q Consensus 528 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 607 (882)
....+ ++.. ....|+|||+.|+.++.++ +.+||+.++........+ ....+.|+|||++|+.++.+|.+.+|.+
T Consensus 327 ~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 327 GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 22222 3433 4678999999999888765 666999888764333222 2345789999999999999998888876
Q ss_pred --CCCeeEEEeccCCCceEEEEEcCC
Q 002782 608 --RTGECIATYDKHEDKIWALAVGKK 631 (882)
Q Consensus 608 --~~~~~~~~~~~h~~~v~~l~~s~~ 631 (882)
.+|..+..+..|.+.+...+|+|-
T Consensus 401 ~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 401 VSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EECCCCceEEccCCCCCCCCcccCCC
Confidence 368888899888888999999984
No 216
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.7e-15 Score=147.52 Aligned_cols=195 Identities=17% Similarity=0.222 Sum_probs=156.5
Q ss_pred EEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC
Q 002782 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (882)
Q Consensus 445 ~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~ 524 (882)
.+++|+.+|. .+++++.||++++|+++... .......|...|.++.|||||++|++-+.| ..+||+..
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~----------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSML----------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcch----------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec
Confidence 7889999977 79999999999999987542 455567899999999999999999999999 89999999
Q ss_pred CceeEEEEec--ccCceEEEEEcCCC-----CEEEEeeCCCcEEEEecCCCce-----eeEeecCcCCEEEEEEEeCCCE
Q 002782 525 DLVSVVTFRG--HKRGIWSVEFSPVD-----QVVITASGDKTIKIWSISDGSC-----LKTFEGHTSSVLRASFLTRGAQ 592 (882)
Q Consensus 525 ~~~~~~~~~~--h~~~v~~l~~s~~~-----~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~h~~~v~~~~~s~~g~~ 592 (882)
++..+..... -......+.|+.|+ .+.+....-+.|+.|++....- .++...-...|.+++.+++|++
T Consensus 216 ~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 216 TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 9966665542 23346778888877 3333444556677777643321 1222223458999999999999
Q ss_pred EEEeecCCeEEEEEcCCCeeEEEec-cCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782 593 IVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (882)
Q Consensus 593 l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~ 651 (882)
++.|+.||.|-|++..+-++++-.+ .|..-|+.+.|+||.+++++.+.|....+..+.-
T Consensus 296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999999988877664 7999999999999999999999999999887664
No 217
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=6.8e-15 Score=148.24 Aligned_cols=221 Identities=15% Similarity=0.212 Sum_probs=166.2
Q ss_pred cCCCEEEEEeecCCeEEEEeCCCceEEeee----ecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCccc
Q 002782 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVG----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 483 (882)
Q Consensus 408 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 483 (882)
+.+-. +..|-..|.+.+.|....+....+ .-....++++.|-|.+...++.+-.+|.+.+||.......
T Consensus 183 ~~g~d-llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~------ 255 (636)
T KOG2394|consen 183 PKGLD-LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA------ 255 (636)
T ss_pred CCCcc-eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC------
Confidence 45555 778888899999887653222111 1234789999999988888999999999999986422100
Q ss_pred ccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEE
Q 002782 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW 563 (882)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iw 563 (882)
.-.+-...+++..++....-+. .+..++..+.-....|...+|+|||++||+.+.||.+|||
T Consensus 256 ------------t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF 317 (636)
T KOG2394|consen 256 ------------TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIF 317 (636)
T ss_pred ------------CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEe
Confidence 0011122235555554322111 1113444444455689999999999999999999999999
Q ss_pred ecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcC-------------
Q 002782 564 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK------------- 630 (882)
Q Consensus 564 d~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~------------- 630 (882)
|..+.+++..+...-+..+|++|||||+||++|++|..|.||.+...+.+..-++|.+.|..++|.|
T Consensus 318 ~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~ 397 (636)
T KOG2394|consen 318 DFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSG 397 (636)
T ss_pred eccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccccccccccc
Confidence 9999988888877788999999999999999999999999999999999999999999999999972
Q ss_pred ------------------C----C-------------CEEEEEeCCCCEEEEECCCHH
Q 002782 631 ------------------K----T-------------EMFATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 631 ------------------~----~-------------~~l~s~~~dg~i~iw~~~~~~ 653 (882)
+ + -.|.+.|.|-.+.+||+....
T Consensus 398 ~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 398 MDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred ccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 0 1 147788999999999987543
No 218
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.65 E-value=4.9e-09 Score=122.64 Aligned_cols=446 Identities=17% Similarity=0.131 Sum_probs=256.3
Q ss_pred CceEEccCCCEEEEEeCC--e---EEEEEcCCCc---eeeeec-----CCCccEEEEEEcCCCCEEEEEeCCCcEEEE--
Q 002782 23 GPLVVSSDGSFIACACGE--S---INIVDLSNAS---IKSTIE-----GGSDTITALALSPDDKLLFSSGHSREIRVW-- 87 (882)
Q Consensus 23 ~~va~s~dg~~la~~~~~--~---I~i~d~~~~~---~~~~l~-----~~~~~I~~l~~spd~~~las~~~dg~i~iw-- 87 (882)
.+.++.++...++++.+. . |.+-...... .+..+. .....|.++.+-++..-|+.+..+|.|.+.
T Consensus 25 ~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~ 104 (928)
T PF04762_consen 25 TATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVRE 104 (928)
T ss_pred ceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEc
Confidence 356777777666665553 1 2333222221 333333 235689999999999999999999999999
Q ss_pred --ECCCC--eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----C---------C----------eEEEEe
Q 002782 88 --DLSTL--KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD----G---------G----------FCTHYF 140 (882)
Q Consensus 88 --d~~~~--~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~----~---------~----------~~~~~~ 140 (882)
+..+. +.+.. -...|.+++||||+..||.++.++++.+-+-. . | +.-..|
T Consensus 105 ~~~~~~~~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF 181 (928)
T PF04762_consen 105 DPDPDEDEIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQF 181 (928)
T ss_pred cCCCCCceeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCcc
Confidence 54443 33333 35889999999999999999988888875321 0 0 100111
Q ss_pred ec------------------------CCCcEEEEEEecCCCccEEEEEeC------CCcEEEEECCCCeEEEEecCcccc
Q 002782 141 KG------------------------HKGVVSSILFHPDTDKSLLFSGSD------DATVRVWDLLAKKCVATLDKHFSR 190 (882)
Q Consensus 141 ~~------------------------h~~~V~~l~f~~~~~~~~l~sgs~------dg~I~vwd~~~~~~~~~l~~h~~~ 190 (882)
+| +...-..++|-.||.. +|+.+. -..++||+-+ |....+...-.+-
T Consensus 182 ~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y--FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL 258 (928)
T PF04762_consen 182 HGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY--FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL 258 (928)
T ss_pred CcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE--EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc
Confidence 11 1223456778887765 776654 2579999954 7666555555555
Q ss_pred eEEEEEccCCCEEEEEeC---CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEE
Q 002782 191 VTSMAITSDGSTLISAGR---DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 267 (882)
Q Consensus 191 v~~l~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (882)
-.+++|.|.|+++++..+ ...|.+|.-...+. ..+.
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh-geF~---------------------------------------- 297 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH-GEFT---------------------------------------- 297 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe-eeEe----------------------------------------
Confidence 668899999999988764 22333333221110 0000
Q ss_pred EEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeee
Q 002782 268 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 347 (882)
Q Consensus 268 ~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 347 (882)
.........+..+.|++++.-|++...+. +.+|....-. .-+..
T Consensus 298 ------------------------------l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-----WYLKq 341 (928)
T PF04762_consen 298 ------------------------------LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-----WYLKQ 341 (928)
T ss_pred ------------------------------cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-----EEEEE
Confidence 00011223456777877777777766444 8888776431 11111
Q ss_pred eec-ccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEE
Q 002782 348 RLV-GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (882)
Q Consensus 348 ~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 426 (882)
.+. .....+..+.|.+.+...|.+.+.+|.+..++..-.... +.. ..|++.. .+..-+...+.+-
T Consensus 342 ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~----s~~---------~~~~D~g-~vaVIDG~~lllT 407 (928)
T PF04762_consen 342 EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR----SPG---------SSPNDNG-TVAVIDGNKLLLT 407 (928)
T ss_pred EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe----cCC---------CCccCce-EEEEEeCCeEEEe
Confidence 111 222334558999998999999998888877664211100 000 1111222 1111122244444
Q ss_pred eCCCceE-----EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchh--------hhhhc
Q 002782 427 DSESRCC-----VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA--------VVAAH 493 (882)
Q Consensus 427 d~~~~~~-----~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~--------~~~~~ 493 (882)
.+..... ...+ .-..+|.+++|++++. .+++-..||.+.+|................... .....
T Consensus 408 pf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (928)
T PF04762_consen 408 PFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELP 485 (928)
T ss_pred cccccCCCchHhceEE-cCCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccc
Confidence 4443211 1112 2346899999999876 488889999999998765432210000000000 11122
Q ss_pred CCCeeEEEEcCCCcEEEEEcCC---CcEEEEeCCCce---eEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCC
Q 002782 494 GKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLV---SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567 (882)
Q Consensus 494 ~~~i~~~~~s~~~~~la~~s~d---g~i~iwd~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~ 567 (882)
...+..++|..+..+++....+ ..+.++++.... .......-...+..+...++...++.-..+|.+...+...
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 486 LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence 3457788888888777766654 568888774332 2333333445566666666655566667788888666543
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=4.8e-16 Score=153.66 Aligned_cols=199 Identities=19% Similarity=0.275 Sum_probs=176.3
Q ss_pred ceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC
Q 002782 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~ 102 (882)
.+.++.+|++|+.++.. .|..+|..++.+...+.. .+.|..+.|-.+.+++|++-. ..++||| ..|..++-++.|
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-~y~yvYD-~~GtElHClk~~- 209 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK-KYVYVYD-NNGTELHCLKRH- 209 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh-ceEEEec-CCCcEEeehhhc-
Confidence 48899999999988765 899999999998887764 568899999999999998865 5899999 567778888765
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEE
Q 002782 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182 (882)
Q Consensus 103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~ 182 (882)
.+|..+.|-|..-+|++++..|.+.--|+.+|+.+..+....+.+..++-+|-. .++-+|...|+|.+|...+.+++.
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N--aVih~GhsnGtVSlWSP~skePLv 287 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN--AVIHLGHSNGTVSLWSPNSKEPLV 287 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc--ceEEEcCCCceEEecCCCCcchHH
Confidence 789999999999999999999999999999999999999889999999998853 458889999999999999999999
Q ss_pred EecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecC
Q 002782 183 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (882)
Q Consensus 183 ~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 228 (882)
.+-.|.++|.++++.++|.+++|.|.|..++|||++....+.++..
T Consensus 288 KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 288 KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 9999999999999999999999999999999999998765554443
No 220
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=7.6e-14 Score=129.99 Aligned_cols=269 Identities=16% Similarity=0.210 Sum_probs=189.0
Q ss_pred CCcEEEEEEc----CCcEEEEeC--CCceeeeee-eCCCcceEEeeeeeecCCC----EEEEEeecCCeEEEEeCCC--c
Q 002782 365 EEQYLAVATN----IEQVQVYDL--SSMSCSYVL-AGHSEIVLCLDTCALSSGK----ILIVTGSKDNSVRLWDSES--R 431 (882)
Q Consensus 365 ~~~~l~~~~~----~~~i~i~d~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~--~ 431 (882)
...++++|+- .+.|.+..+ .+++.+..- ..|.-+++.+. |.|+.. .++++. +..+|+|.+.. .
T Consensus 58 ~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~--wiPd~~g~~pdlLATs--~D~LRlWri~~ee~ 133 (364)
T KOG0290|consen 58 KKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLM--WIPDSKGVYPDLLATS--SDFLRLWRIGDEES 133 (364)
T ss_pred cceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceE--ecCCccccCcchhhcc--cCeEEEEeccCcCC
Confidence 3445666543 244555443 333333221 25777788887 555542 235554 44799998773 2
Q ss_pred eEE--e-----eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC
Q 002782 432 CCV--G-----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (882)
Q Consensus 432 ~~~--~-----~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (882)
... . .-..+..++++..|..-..+++.+.+-|-+..+||+..+. .......+.+|.+.|..++|..
T Consensus 134 ~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-------~~~vkTQLIAHDKEV~DIaf~~ 206 (364)
T KOG0290|consen 134 RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-------SGTVKTQLIAHDKEVYDIAFLK 206 (364)
T ss_pred ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-------ccceeeEEEecCcceeEEEecc
Confidence 211 1 1224667999999998888899999999999999998751 2224556678999999999998
Q ss_pred CC-cEEEEEcCCCcEEEEeCCCceeEEEEec---ccCceEEEEEcCCC-CEEEEeeCC-CcEEEEecCCC-ceeeEeecC
Q 002782 505 ND-SLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVD-QVVITASGD-KTIKIWSISDG-SCLKTFEGH 577 (882)
Q Consensus 505 ~~-~~la~~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~s~~~-~~l~s~~~d-~~i~iwd~~~~-~~~~~~~~h 577 (882)
.+ +.+|+.+.||.+++||++..+....+.. ...+...++|++.+ +++|+-..| ..|.|.|++.. ..+..+++|
T Consensus 207 ~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H 286 (364)
T KOG0290|consen 207 GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH 286 (364)
T ss_pred CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC
Confidence 65 6889999999999999998765444432 24578889998855 567776554 46999999864 678899999
Q ss_pred cCCEEEEEEEeC-CCEEEEeecCCeEEEEEcCCCe------eEEEeccCCCceEEEEEcCC-CCEEEEEeCCCCEEE
Q 002782 578 TSSVLRASFLTR-GAQIVSCGADGLVKLWTVRTGE------CIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNL 646 (882)
Q Consensus 578 ~~~v~~~~~s~~-g~~l~s~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~i 646 (882)
.+.|+.++|.|. ...|.++|.|..+.+||+..-- ++..+. -.++|..+.|++. ..+++.+. +..+.+
T Consensus 287 ~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 287 QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 999999999985 5689999999999999997532 222333 4678999999965 44565554 344444
No 221
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.64 E-value=3.7e-13 Score=135.35 Aligned_cols=365 Identities=15% Similarity=0.194 Sum_probs=228.5
Q ss_pred ccccccccc-ccccCCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCC------
Q 002782 9 SYGCEPVLQ-QFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS------ 81 (882)
Q Consensus 9 ~~~~~~~~~-~~y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~d------ 81 (882)
+|.....++ .-+....+.+||.|.+|++.....|.+|+-..+..+..+.. ..|.-+.|||.++||.+-+..
T Consensus 21 s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~--~~V~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 21 SEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRH--PDVKYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred cccccccccccCcchhheeecCcchheehhhccceEEccccchhheeeeec--CCceecccCcccceeeeeccCCccChh
Confidence 344455555 44555679999999999999999999999888776666653 468999999999999986543
Q ss_pred ---------CcEEEEECCCCeeEEEeecCCCC--EE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC-CCcEE
Q 002782 82 ---------REIRVWDLSTLKCLRSWKGHDGP--AI-GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH-KGVVS 148 (882)
Q Consensus 82 ---------g~i~iwd~~~~~~~~~~~~h~~~--V~-~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h-~~~V~ 148 (882)
+.+.+||+.+|..+..+.+...+ .. -+.|+-+.+|+|-. ....+.|+++...-..+.+..- ...|.
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~ 177 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGIL 177 (561)
T ss_pred hccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhcccccee
Confidence 35999999999999999987766 55 68899999888765 3466999997222211112111 35678
Q ss_pred EEEEecCCCccEEEE-----EeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceee
Q 002782 149 SILFHPDTDKSLLFS-----GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK 223 (882)
Q Consensus 149 ~l~f~~~~~~~~l~s-----gs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 223 (882)
...|+|.+++..|+. ++.++++++|.+..++.+.+-.--.-.=..+.|.+.|++|+.-..
T Consensus 178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~--------------- 242 (561)
T COG5354 178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM--------------- 242 (561)
T ss_pred eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEE---------------
Confidence 888888765533332 234455566655443333221111111112223333322221100
Q ss_pred eeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCc
Q 002782 224 LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDS 303 (882)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 303 (882)
T Consensus 243 -------------------------------------------------------------------------------- 242 (561)
T COG5354 243 -------------------------------------------------------------------------------- 242 (561)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeC
Q 002782 304 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383 (882)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~ 383 (882)
T Consensus 243 -------------------------------------------------------------------------------- 242 (561)
T COG5354 243 -------------------------------------------------------------------------------- 242 (561)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEE-eeC
Q 002782 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS-GSS 462 (882)
Q Consensus 384 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s-~~~ 462 (882)
.| + ..++.++ ....++|+++....+ .....-.++|...+|.|.+..+.+. |-.
T Consensus 243 ----------t~----------~-ksnKsyf----gesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~ 296 (561)
T COG5354 243 ----------TH----------T-KSNKSYF----GESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYM 296 (561)
T ss_pred ----------Ee----------e-eccccee----ccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEeccc
Confidence 00 0 0000001 012334444432221 1222446788889998887765433 356
Q ss_pred CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCC---CcEEEEeCCCceeEE-EEecccCc
Q 002782 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVV-TFRGHKRG 538 (882)
Q Consensus 463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~d---g~i~iwd~~~~~~~~-~~~~h~~~ 538 (882)
+..+.++|++.. .........=+.+.|+|.++++++++-| |.+-+||........ .+.+. .
T Consensus 297 pa~~s~~~lr~N-------------l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n 361 (561)
T COG5354 297 PASVSVFDLRGN-------------LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--N 361 (561)
T ss_pred ccceeecccccc-------------eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--C
Confidence 778888888753 1112223344678899999999997765 579999987765444 56543 3
Q ss_pred eEEEEEcCCCCEEEEeeC------CCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCC
Q 002782 539 IWSVEFSPVDQVVITASG------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600 (882)
Q Consensus 539 v~~l~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg 600 (882)
..-+.|+||++++.+... |..|+|||+.....- ..+.+.|.|.|++.-+.+.+.
T Consensus 362 ~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 362 TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 455789999999988743 778999998543321 455688989888877776654
No 222
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=2.2e-14 Score=135.56 Aligned_cols=203 Identities=21% Similarity=0.250 Sum_probs=166.8
Q ss_pred ccccccccCCceEEccCCCEEEEEeCC-eEEEEEcCCCc---eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 002782 14 PVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLSNAS---IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL 89 (882)
Q Consensus 14 ~~~~~~y~g~~va~s~dg~~la~~~~~-~I~i~d~~~~~---~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~ 89 (882)
..++|+|. -||++|+..+|++..+ .|.||...... ..+++..|...|+++.|+|..+.|++++.|..-++|..
T Consensus 8 ~~~~pitc---hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 8 RLLEPITC---HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred eccCceee---eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34567776 9999999999999887 89999876554 67899999999999999999999999999999999998
Q ss_pred -CCC--eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE----EEEeecCCCcEEEEEEecCCCccEEE
Q 002782 90 -STL--KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC----THYFKGHKGVVSSILFHPDTDKSLLF 162 (882)
Q Consensus 90 -~~~--~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~----~~~~~~h~~~V~~l~f~~~~~~~~l~ 162 (882)
..+ ++.-.+.-++..++++.|+|.++.+|+|+....|.||-.+...- .+.-+.+.+.|+++.|+|+. .+|+
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn--VLla 162 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN--VLLA 162 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc--ceec
Confidence 333 45555666889999999999999999999999999998865532 22334678889999999964 5699
Q ss_pred EEeCCCcEEEEECC-----C-------------CeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCce
Q 002782 163 SGSDDATVRVWDLL-----A-------------KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS 221 (882)
Q Consensus 163 sgs~dg~I~vwd~~-----~-------------~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~ 221 (882)
+|+.|+..+|+..- + |..+..+....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999999999652 1 12223333456789999999999999999999999998877654
No 223
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=5.9e-13 Score=128.69 Aligned_cols=197 Identities=12% Similarity=0.181 Sum_probs=146.8
Q ss_pred eEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEEEeecCC
Q 002782 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS--REIRVWDLSTLKCLRSWKGHD 102 (882)
Q Consensus 25 va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~d--g~i~iwd~~~~~~~~~~~~h~ 102 (882)
+.|..|+..|..|..+...+|+.+.-............|.-+-||. .++|..+.+ ..+++.+.+.+..+..+. -.
T Consensus 11 ~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fp 87 (391)
T KOG2110|consen 11 IGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FP 87 (391)
T ss_pred eeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEe-cC
Confidence 3388899999999999999999876655333333445677777874 456655443 459999999888888776 34
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC-CCcEEEEEEecCCCccEEEE--EeCCCcEEEEECCCCe
Q 002782 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH-KGVVSSILFHPDTDKSLLFS--GSDDATVRVWDLLAKK 179 (882)
Q Consensus 103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h-~~~V~~l~f~~~~~~~~l~s--gs~dg~I~vwd~~~~~ 179 (882)
.+|.++.++.+ +|+++-.+. |.|||+.+.+.++++..- ..+---++++|+....+++- ....|.|.+||+.+-+
T Consensus 88 t~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~ 164 (391)
T KOG2110|consen 88 TSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ 164 (391)
T ss_pred CceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence 78999988754 577765544 999999999999988754 22222344444433333443 3346999999999999
Q ss_pred EEEEecCcccceEEEEEccCCCEEEEEeCCCe-EEEEecCCceeeeeec
Q 002782 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKV-VNLWDLRDYSCKLTVP 227 (882)
Q Consensus 180 ~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~ 227 (882)
.+..+..|.+.+.+++|+++|.+|++++..|+ |||+.+.+++.+..+.
T Consensus 165 ~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 165 PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 99999999999999999999999999998885 6788887776665543
No 224
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=4e-15 Score=146.35 Aligned_cols=194 Identities=20% Similarity=0.184 Sum_probs=155.7
Q ss_pred CceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec-
Q 002782 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG- 100 (882)
Q Consensus 23 ~~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~- 100 (882)
..+||++||..|++++.+ .++||+.++...+.....|...|.++.|||||++||+.+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 389999999999999766 89999988888888888899999999999999999999999 999999999977776653
Q ss_pred -CCCCEEEEEEcCCC---CEE--EEEeCCCcEEEEECCCCeE-----EEEeecCCCcEEEEEEecCCCccEEEEEeCCCc
Q 002782 101 -HDGPAIGMACHPSG---GLL--ATAGADRKVLVWDVDGGFC-----THYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (882)
Q Consensus 101 -h~~~V~~l~fs~~~---~~l--asg~~dg~v~vwd~~~~~~-----~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~ 169 (882)
.+.....+.|+.|+ .+. +....-+.|+.||+..... ......-...|++++.+++|+. ++.|+.||.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf--~AlGT~dGs 304 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF--LALGTMDGS 304 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE--EEEeccCCc
Confidence 33466778898887 332 2333446677766632211 1111123457999999998765 999999999
Q ss_pred EEEEECCCCeEEEEe-cCcccceEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 002782 170 VRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (882)
Q Consensus 170 I~vwd~~~~~~~~~l-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 219 (882)
|-+++..+.++++.. +.|...|+.+.|+||.+++++.+.|....+..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999998887766 67999999999999999999999999888877653
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=7.6e-13 Score=125.38 Aligned_cols=278 Identities=19% Similarity=0.257 Sum_probs=180.9
Q ss_pred EEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecC------CeEEEEeCCC
Q 002782 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD------NSVRLWDSES 430 (882)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~ 430 (882)
..++|.. +..-+++|.. .-.++|+.+..+.....+.+.+.+.-+. ... ..+.+.++|+.+ ..+.|||-..
T Consensus 9 lsvs~NQ-D~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~ve-MLf-R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 9 LSVSFNQ-DHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVE-MLF-RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eEEEEcc-CCceEEEEec-CceEEEecCchhhhhhhccccCchhhhh-Hhh-hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 3455554 5667777777 4588998876443322222222211111 112 223334445433 4799999777
Q ss_pred ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEE
Q 002782 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (882)
Q Consensus 431 ~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la 510 (882)
.+++..+. ...+|.++.+.++ .+++. ..+.|.+|.+..... ...... .....+..-+++-..+..+||
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k------~l~~~e-t~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPK------LLHVIE-TRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChh------heeeee-cccCCCceEeecCCCCceEEE
Confidence 77776654 5678999999987 34433 467899999874311 000111 111122233333333445555
Q ss_pred E-EcCCCcEEEEeCCCcee--EEEEecccCceEEEEEcCCCCEEEEeeCCCc-EEEEecCCCceeeEeec--CcCCEEEE
Q 002782 511 T-GSQDRTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDKT-IKIWSISDGSCLKTFEG--HTSSVLRA 584 (882)
Q Consensus 511 ~-~s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~--h~~~v~~~ 584 (882)
. |-.-|.|.|-|+...+. ...+..|...|.|++.+.+|..+||+|..|+ |||||..+|+.+..++. ....|.++
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 4 44568999999987655 5778899999999999999999999999998 79999999999999874 34579999
Q ss_pred EEEeCCCEEEEeecCCeEEEEEcCCCe---e---------------------EEEeccCCCceEEEEEcCCCCEEEEEeC
Q 002782 585 SFLTRGAQIVSCGADGLVKLWTVRTGE---C---------------------IATYDKHEDKIWALAVGKKTEMFATGGS 640 (882)
Q Consensus 585 ~~s~~g~~l~s~~~dg~i~iwd~~~~~---~---------------------~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 640 (882)
+|||++.+|+.+|.-|++.|+.++... . +..+.-..+...-++|..+.+.++..+.
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~ 312 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICA 312 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEe
Confidence 999999999999999999999887532 1 0111122334445566666566666777
Q ss_pred CCCEEEEECC
Q 002782 641 DALVNLWHDS 650 (882)
Q Consensus 641 dg~i~iw~~~ 650 (882)
||...-+...
T Consensus 313 Dgsy~k~~f~ 322 (346)
T KOG2111|consen 313 DGSYYKFKFD 322 (346)
T ss_pred CCcEEEEEec
Confidence 7775544443
No 226
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.62 E-value=1.2e-10 Score=116.10 Aligned_cols=177 Identities=13% Similarity=0.085 Sum_probs=128.4
Q ss_pred EeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCC-eEEEEeCCCceEEeeeec
Q 002782 361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN-SVRLWDSESRCCVGVGTG 439 (882)
Q Consensus 361 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~ 439 (882)
|...++++++..+. |+..+.+...+-.+. -+|.+.|.-.. ...+++. ++.|..|| .+-++|..+++.. .+..
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r--~~~~~e~-~vigt~dgD~l~iyd~~~~e~k-r~e~ 399 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRR--IQVDPEG-DVIGTNDGDKLGIYDKDGGEVK-RIEK 399 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEE--EccCCcc-eEEeccCCceEEEEecCCceEE-EeeC
Confidence 34557888888887 777777765554332 24555566655 4455555 88899998 8999999988654 3456
Q ss_pred ccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCC---
Q 002782 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR--- 516 (882)
Q Consensus 440 ~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg--- 516 (882)
.-+.|.++..+++|+ +++.+.....+.+.|+.++. ....-....+-|+.++|+|+++++|.+--+|
T Consensus 400 ~lg~I~av~vs~dGK-~~vvaNdr~el~vididngn----------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~t 468 (668)
T COG4946 400 DLGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNGN----------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYT 468 (668)
T ss_pred CccceEEEEEcCCCc-EEEEEcCceEEEEEEecCCC----------eeEecccccceeEEEEEcCCceeEEEecCcceee
Confidence 778899999999988 67888888888888988763 2223334556799999999999999987776
Q ss_pred -cEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC
Q 002782 517 -TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 556 (882)
Q Consensus 517 -~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 556 (882)
.|+++|+.+++...... ....-.+-+|.||+++|.--+.
T Consensus 469 q~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 469 QSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 58999999887655433 3333455678889998775543
No 227
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3e-14 Score=155.48 Aligned_cols=211 Identities=14% Similarity=0.083 Sum_probs=147.7
Q ss_pred CCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCC---CeEEEEecCCCCCCCCCcccccchhhhhhcCCC
Q 002782 420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496 (882)
Q Consensus 420 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (882)
+..|.+||..... ...+..|...+...+|+|+|+. ++.++.+ ..|.+||+.++.. ....... ..
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~--------~~l~~~~---g~ 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGAR--------KVVASFR---GH 249 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCce--------EEEecCC---Cc
Confidence 4689999987655 4456677888999999999985 5554432 4799999875421 0111112 22
Q ss_pred eeEEEEcCCCcEEEEEc-CCCcEEEE--eCCCceeEEEEecccCceEEEEEcCCCCEEEEee-CCCcEEEEecCCC-cee
Q 002782 497 INSLAVAPNDSLVCTGS-QDRTACVW--RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDG-SCL 571 (882)
Q Consensus 497 i~~~~~s~~~~~la~~s-~dg~i~iw--d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~-~~~ 571 (882)
...++|+|||+.|+.++ .+|.+.|| |+.++. ...+..+...+.+..|+|||+.|+.++ .++...||++... ...
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 34689999999888764 67765554 666554 445666777788999999999777554 5788888876532 222
Q ss_pred eEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782 572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 572 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~ 650 (882)
..+ ++.. ....|+|||++|+.++.++ +.+||+.+++.......+ ...++.|+|||++|+.++.++...+|.+.
T Consensus 329 ~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 329 SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 223 3433 4578999999998888766 555999988765333322 23567899999999999999998888764
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.60 E-value=1.3e-14 Score=146.30 Aligned_cols=193 Identities=22% Similarity=0.353 Sum_probs=150.7
Q ss_pred ccCCCEEEEEe-CCeEEEEEcCCCceeeeecC----CCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCC----------
Q 002782 28 SSDGSFIACAC-GESINIVDLSNASIKSTIEG----GSDTITALALSPDDK-LLFSSGHSREIRVWDLST---------- 91 (882)
Q Consensus 28 s~dg~~la~~~-~~~I~i~d~~~~~~~~~l~~----~~~~I~~l~~spd~~-~las~~~dg~i~iwd~~~---------- 91 (882)
.|.|--|..+. .+.|.+.|....+..+.+.. ....|+|+.|-|.+. .+.++..+|.++++|..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 35554444444 45888888766333222221 346899999999664 445567789999997631
Q ss_pred ------------------CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe
Q 002782 92 ------------------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFH 153 (882)
Q Consensus 92 ------------------~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~ 153 (882)
..++..|.-..++|...+|+|||++||+.+.||.++|+|..+.+++..++..-+...|++|+
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 12233343445688999999999999999999999999999999888888888999999999
Q ss_pred cCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccC----------------------------------
Q 002782 154 PDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD---------------------------------- 199 (882)
Q Consensus 154 ~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~---------------------------------- 199 (882)
||+++ +++|+.|-.|.||.+..++.+..-++|.+.|..++|.|-
T Consensus 342 PDGKy--IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~ 419 (636)
T KOG2394|consen 342 PDGKY--IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA 419 (636)
T ss_pred CCccE--EEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence 99876 999999999999999999999999999999999999830
Q ss_pred -C-------------CEEEEEeCCCeEEEEecCCcee
Q 002782 200 -G-------------STLISAGRDKVVNLWDLRDYSC 222 (882)
Q Consensus 200 -~-------------~~l~s~~~dg~i~vwd~~~~~~ 222 (882)
+ -++-+.+.|..+.+||+.....
T Consensus 420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred CCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 1 2467888999999999976543
No 229
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=1e-13 Score=131.12 Aligned_cols=235 Identities=15% Similarity=0.160 Sum_probs=184.8
Q ss_pred CCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce---EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEec
Q 002782 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (882)
Q Consensus 395 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~ 471 (882)
-..+|+|.+ +.+++.. ++.+..+..+.||...... ...++..|...|+.+.|+|..+ .+++++.|..-++|..
T Consensus 9 ~~~pitchA--wn~drt~-iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 9 LLEPITCHA--WNSDRTQ-IAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQ 84 (361)
T ss_pred ccCceeeee--ecCCCce-EEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCcccccc
Confidence 356888988 8888887 9999999999999887654 6678889999999999999976 6999999999999998
Q ss_pred CCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeE----EEEecccCceEEEEEcCC
Q 002782 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV----VTFRGHKRGIWSVEFSPV 547 (882)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~----~~~~~h~~~v~~l~~s~~ 547 (882)
..+. ..++...+..++...+++.|+|.++.+|+|+..+.|.||-++....- ..-+.+.+.|++++|+|+
T Consensus 85 ~~~~-------~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 85 PSGG-------TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred CCCC-------eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 5332 34456666778899999999999999999999999999987654322 122346788999999999
Q ss_pred CCEEEEeeCCCcEEEEecC------------------CCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCC
Q 002782 548 DQVVITASGDKTIKIWSIS------------------DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (882)
Q Consensus 548 ~~~l~s~~~d~~i~iwd~~------------------~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 609 (882)
+-+|++|+.|+..||+..- -|.++..+....+.+..+.|+|+|..|+-.+.|+.+.+=|...
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 9999999999999999741 1233444545667899999999999999999999999999766
Q ss_pred Ce-eEEEeccCCCceEEEEEcCCCCEEEEEeCC
Q 002782 610 GE-CIATYDKHEDKIWALAVGKKTEMFATGGSD 641 (882)
Q Consensus 610 ~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 641 (882)
.. .+.......-+..++.|-.+. .++.++.|
T Consensus 238 p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 238 PSERVQSVATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred CchhccchhhccCCceeeEeecCC-ceeecCCC
Confidence 54 344444344667777776444 34455555
No 230
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.60 E-value=9.5e-13 Score=135.51 Aligned_cols=415 Identities=16% Similarity=0.148 Sum_probs=245.2
Q ss_pred CCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCC---CcceEEeeeeee-----------------cCCCEEEEEeecCCe
Q 002782 363 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH---SEIVLCLDTCAL-----------------SSGKILIVTGSKDNS 422 (882)
Q Consensus 363 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~v~~~~~~~~-----------------~~~~~~l~~~~~dg~ 422 (882)
|+...++|..+.+|.+++|+...++....+... ++...+..|... ..+..+++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 446678999999999999999988776655431 222223222211 123446888999999
Q ss_pred EEEEeCCCceEEeeee--cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEE
Q 002782 423 VRLWDSESRCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 500 (882)
Q Consensus 423 i~iwd~~~~~~~~~~~--~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 500 (882)
|.+|+...++....+. .|.+.|.++.++.+-. .+.+++.|+.+..|+..... ...........+.++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~----------~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKV----------IIRIWKEQKPLVSSL 150 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccce----------eeeeeccCCCccceE
Confidence 9999999999887766 6999999999888765 79999999999999987542 444455566778999
Q ss_pred EEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCC-----CCEEEE-eeCCCcEEEEecCCC----ce
Q 002782 501 AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV-----DQVVIT-ASGDKTIKIWSISDG----SC 570 (882)
Q Consensus 501 ~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~l~s-~~~d~~i~iwd~~~~----~~ 570 (882)
+++|||..+++++ ++|++||+++.+.+..|.||.++|.++.|..+ |.++++ ...+..+.+|-+... ..
T Consensus 151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~ 228 (541)
T KOG4547|consen 151 CISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSL 228 (541)
T ss_pred EEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchh
Confidence 9999999999987 78999999999999999999999999999877 555554 455666788876542 22
Q ss_pred eeEeecCcCCEEEEEE-EeCCC---EEEEeecCCeEEEEEcCCCeeE-EEeccCCCceEEEEEcCCC-------------
Q 002782 571 LKTFEGHTSSVLRASF-LTRGA---QIVSCGADGLVKLWTVRTGECI-ATYDKHEDKIWALAVGKKT------------- 632 (882)
Q Consensus 571 ~~~~~~h~~~v~~~~~-s~~g~---~l~s~~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~s~~~------------- 632 (882)
...+....-++..=.+ ..++. .+++...+|.+..+-..-.... ..+..+. ..++++.++
T Consensus 229 ~~sl~~~dipv~~ds~~~ed~~~~l~lAst~~~g~v~~~~~nl~~l~~~~~~kv~---~~~~~~s~g~~a~~~~~~~~~~ 305 (541)
T KOG4547|consen 229 SCSLTVPDIPVTSDSGLLEDGTIPLVLASTLIPGIVHLKLSNLIILLHKKIVKVN---GYNADSSKGFLAALFGIDKAHA 305 (541)
T ss_pred heeeccCCCCeEeccccccccccceEEeeeccCceeeeccccHHHHhcCcccccc---ceeeecccchhhhhcccchhhh
Confidence 2333333333322222 22333 2344444555444322100000 0000000 001111111
Q ss_pred --------------------CEE--EEEeCC--CCEEEEECCCHHHHH--HHh-hh-hHHHHhccchHHH----hh---h
Q 002782 633 --------------------EMF--ATGGSD--ALVNLWHDSTAAERE--EAF-RK-EEEAVLRGQELEN----AV---L 677 (882)
Q Consensus 633 --------------------~~l--~s~~~d--g~i~iw~~~~~~~~~--~~~-~~-~~~~~~~~~~~~~----~~---~ 677 (882)
+.+ .+-..+ +.+.+.-..++..+. ... .. .++.+..+....+ .. .
T Consensus 306 ~l~~g~~~~ps~~~vsln~~~~l~l~~R~l~~~~~~~~~~~k~~~rqv~~n~~~k~~~~~~~q~~~p~~~~l~v~~~~g~ 385 (541)
T KOG4547|consen 306 LLAYGSLVNPSFVRVSLNLGQKLHLMDRDLSGSGKLKLVTSKEGKRQVVLNSVAKLGEAEVIQEEPPLTEDLPVLTKGGD 385 (541)
T ss_pred hhhcccccCchhhhhhhhhcchhhhhhhhccCCcccceeeeecccceeecchhhhhcchhhhcccCcchhcchhhhcCCc
Confidence 000 000000 001111101100000 000 00 0000000000000 00 0
Q ss_pred ccchHHHHHHHhhcCCchh-----HH-----HHHHHHH-----------hcchhHHHHHHHHhccCHHHHHHHHHHHHHH
Q 002782 678 DADYTKAIQVAFELRRPHK-----LF-----ELFASVC-----------RKREAELQIEKALHALGKEEIRQLLEYVREW 736 (882)
Q Consensus 678 ~~~~~~a~~~a~~~~~~~~-----~~-----~~~~~~~-----------~~~~~~~~l~~~~~~l~~~~~~~ll~~~~~~ 736 (882)
.+-+.+|...+++.+.... .. ..+.+.+ .....+..++.++.+++++.+.++++-+...
T Consensus 386 iEv~~earl~~l~i~~~~~~~k~~~~tll~s~~l~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~st~~pll~ela~r 465 (541)
T KOG4547|consen 386 IEVSTEARLSALDINLTSNADKSDESTLLASVSLNQALSSRDSHILTDVLISRDEELIKSTVLRMEESTAPPLLEELAPR 465 (541)
T ss_pred ceeeehhhhhhcccccccccchhhhhccchhhhhhhhhcccccccchhhhccCChHHHHHHHhhcChhhccchhccchhh
Confidence 0011122222222111100 00 0111111 1223356789999999999999999987654
Q ss_pred -hcCCcchHHHHHHHHHHhccCCcchhhcccChHhHHhhhccchhhHHHHHHHHHhhhh
Q 002782 737 -NTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTF 794 (882)
Q Consensus 737 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~ 794 (882)
.++......+..|+++++..|+ ..+.+.|+....+..++.-..|.++.+.+++....
T Consensus 466 lq~~~~~~~~~l~w~k~~l~~h~-~yl~sv~~~~~~l~~~~~~~~~~ae~~~~~la~~~ 523 (541)
T KOG4547|consen 466 LQSRASRGRILLVWLKTRLTSHN-SYLSSVPDQLETLSGKMQKDLRTAEQLGHLLAMEL 523 (541)
T ss_pred hccccccCchhhhhhhhhhhccc-ceeecCcchhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4777888999999999999999 89999998888888888888888888887774433
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=1.3e-13 Score=134.21 Aligned_cols=270 Identities=13% Similarity=0.159 Sum_probs=189.9
Q ss_pred CceEEEEEeCCCCcEEEEEE-cCCcEEEEeCCCceeeee------eeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEE
Q 002782 354 EEILDLKFLGEEEQYLAVAT-NIEQVQVYDLSSMSCSYV------LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (882)
Q Consensus 354 ~~i~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 426 (882)
..+..++|..++..-+..+. .+..+..+......+... ......+|..+. ..++ . +++|-.+|.+.+|
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~---~~dg-~-Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLK---LADG-T-LITCVSSGNLQVR 130 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchh---hcCC-E-EEEEecCCcEEEE
Confidence 34455555443333333333 445555555554443332 334455566553 2333 3 8888999999999
Q ss_pred eCCCce----EEeeeecccccEEEEEEccCCCcEEEEeeCC--CeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEE
Q 002782 427 DSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 500 (882)
Q Consensus 427 d~~~~~----~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 500 (882)
....+. .+..+.. ...+..+.-++..++++++|+.. ..+++||+....+.-. ..+.+.-..-..-.-.++++
T Consensus 131 ~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~-aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS-AKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred eccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeee-ccCCCCccccceeeeeeccc
Confidence 887432 1222222 25566677777777788889999 8999999987622110 00111111111122356788
Q ss_pred EEcCC--CcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeE-eec
Q 002782 501 AVAPN--DSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEG 576 (882)
Q Consensus 501 ~~s~~--~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~ 576 (882)
.|-+. ...||+++.-+.+++||...+ .++..+.-...+++++...|+++++++|..-+.+..||++.++.+.. +.+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 89887 889999999999999999865 67778888889999999999999999999999999999999998877 889
Q ss_pred CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCC
Q 002782 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK 631 (882)
Q Consensus 577 h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~ 631 (882)
-.++|.++..+|.+.+|+++|-|..|+|+|+++.+++.... -...++++-+.++
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 99999999999999999999999999999999977665543 2445566666543
No 232
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.59 E-value=4.7e-12 Score=127.54 Aligned_cols=376 Identities=16% Similarity=0.233 Sum_probs=227.6
Q ss_pred CeEE-EEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEE
Q 002782 40 ESIN-IVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA 118 (882)
Q Consensus 40 ~~I~-i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~la 118 (882)
..|. .|+..+...-..+.....++...++||.|.+|++.... .|.+|+-+.+..+..+. | ..|..+.|||.++||.
T Consensus 11 ~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~ 87 (561)
T COG5354 11 AVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLV 87 (561)
T ss_pred ceEEEeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceee
Confidence 3444 45555555555555577899999999999999987664 69999998887666665 3 6799999999999999
Q ss_pred EEeC---------------CCcEEEEECCCCeEEEEeecCCCc--EE-EEEEecCCCccEEEEEeCCCcEEEEECCCCeE
Q 002782 119 TAGA---------------DRKVLVWDVDGGFCTHYFKGHKGV--VS-SILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (882)
Q Consensus 119 sg~~---------------dg~v~vwd~~~~~~~~~~~~h~~~--V~-~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~ 180 (882)
+-+. +..+.|||+.+|..+..+.+-..+ .+ -+.|+-++.+ ++-. ....++|+++ ++..
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y--~ARv-v~~sl~i~e~-t~n~ 163 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKY--VARV-VGSSLYIHEI-TDNI 163 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchh--hhhh-ccCeEEEEec-CCcc
Confidence 9653 235999999999999998876666 55 7788887654 3322 3345888886 3321
Q ss_pred ----EEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhh
Q 002782 181 ----VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 256 (882)
Q Consensus 181 ----~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (882)
...++ ...|....|+|.++ ...+..|-.+.
T Consensus 164 ~~~p~~~lr--~~gi~dFsisP~~n-------~~~la~~tPEk------------------------------------- 197 (561)
T COG5354 164 EEHPFKNLR--PVGILDFSISPEGN-------HDELAYWTPEK------------------------------------- 197 (561)
T ss_pred ccCchhhcc--ccceeeEEecCCCC-------CceEEEEcccc-------------------------------------
Confidence 11111 23466666666541 11133332211
Q ss_pred hccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccc
Q 002782 257 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 336 (882)
Q Consensus 257 ~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 336 (882)
.+..+.+++|.
T Consensus 198 -------------~~kpa~~~i~s-------------------------------------------------------- 208 (561)
T COG5354 198 -------------LNKPAMVRILS-------------------------------------------------------- 208 (561)
T ss_pred -------------CCCCcEEEEEE--------------------------------------------------------
Confidence 11112222222
Q ss_pred ccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEE
Q 002782 337 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT 416 (882)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 416 (882)
+..+..+..-.-. .+..+..-+.+.|+.+++
T Consensus 209 ----------------------------------------------Ip~~s~l~tk~lf--k~~~~qLkW~~~g~~ll~- 239 (561)
T COG5354 209 ----------------------------------------------IPKNSVLVTKNLF--KVSGVQLKWQVLGKYLLV- 239 (561)
T ss_pred ----------------------------------------------ccCCCeeeeeeeE--eecccEEEEecCCceEEE-
Confidence 2211111000000 000000003334433111
Q ss_pred eecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCC
Q 002782 417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496 (882)
Q Consensus 417 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (882)
....|. ..++.++ ....+.++++... .........++
T Consensus 240 -------------------l~~t~~---------ksnKsyf----gesnLyl~~~~e~-----------~i~V~~~~~~p 276 (561)
T COG5354 240 -------------------LVMTHT---------KSNKSYF----GESNLYLLRITER-----------SIPVEKDLKDP 276 (561)
T ss_pred -------------------EEEEee---------eccccee----ccceEEEEeeccc-----------ccceecccccc
Confidence 111111 0111111 1234566666532 11111244678
Q ss_pred eeEEEEcCCCcEEEEEc--CCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCC---CcEEEEecCCC-ce
Q 002782 497 INSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDG-SC 570 (882)
Q Consensus 497 i~~~~~s~~~~~la~~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---~~i~iwd~~~~-~~ 570 (882)
|...+|.|.++.+++.+ .+..+.++|++.. ..+......=..+.|+|.+++++.++-| |.|-+||.... .+
T Consensus 277 Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 277 VHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred ceeeeecccCCceeEEecccccceeecccccc---eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 99999999988877654 6778999998876 3334445556778899999999998765 67999997655 44
Q ss_pred eeEeecCcCCEEEEEEEeCCCEEEEeec------CCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCC
Q 002782 571 LKTFEGHTSSVLRASFLTRGAQIVSCGA------DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA 642 (882)
Q Consensus 571 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 642 (882)
+..+.+.... .+.|+|||.++.+... |..|+|||+...... ..+.+.|.|.|++..+.+.+.
T Consensus 354 ~~~~~~~n~s--~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 354 AGAFNGLNTS--YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred EEEeecCCce--EeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 5577665443 3789999998876543 778999998543322 455677888788777766554
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=3.5e-15 Score=147.67 Aligned_cols=232 Identities=17% Similarity=0.209 Sum_probs=191.7
Q ss_pred eEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCC
Q 002782 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 478 (882)
Q Consensus 399 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 478 (882)
...+. +..+|+. ++.|+..|.+-.+|..++.+...+.. ...|..+.|-.+.+ +++..+...+.+||-...
T Consensus 132 PY~~~--ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq--~~AVAQK~y~yvYD~~Gt---- 201 (545)
T KOG1272|consen 132 PYHLD--YTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQ--FFAVAQKKYVYVYDNNGT---- 201 (545)
T ss_pred Ceeee--ecCCccE-EEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchH--HHHhhhhceEEEecCCCc----
Confidence 34455 7788988 88888999999999999988776543 35678888887755 455567788999986542
Q ss_pred CCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCC
Q 002782 479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK 558 (882)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~ 558 (882)
....+.. ...|..+.|-|..-+|++++..|.++.-|+..|+.+..+....+.+..++-+|-...+-+|...|
T Consensus 202 -------ElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 202 -------ELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred -------EEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCc
Confidence 2222222 34788999999999999999999999999999999999998899999999999999999999999
Q ss_pred cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEE
Q 002782 559 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG 638 (882)
Q Consensus 559 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 638 (882)
+|.+|.....+++..+-.|.++|.++++.++|+|++|+|.|..++|||+++...+.++.. ..+...+++|..| +++.
T Consensus 274 tVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~ 350 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLAL 350 (545)
T ss_pred eEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceee
Confidence 999999999999988889999999999999999999999999999999999887777764 5567788888666 3344
Q ss_pred eCCCCEEEEECCC
Q 002782 639 GSDALVNLWHDST 651 (882)
Q Consensus 639 ~~dg~i~iw~~~~ 651 (882)
+....+.||...-
T Consensus 351 ~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 351 SYGDHVQIWKDAL 363 (545)
T ss_pred ecCCeeeeehhhh
Confidence 4445689997653
No 234
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.5e-12 Score=141.68 Aligned_cols=236 Identities=11% Similarity=0.072 Sum_probs=159.4
Q ss_pred CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEee--cCCeEEEEeCCCceEEeeeecccccEEEEEEccCC
Q 002782 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (882)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~ 453 (882)
..|.++|....... .+..+...+.... ++|+|+.++++.. .+..+.+|++.+++..... ...+.+....|+|+|
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~--wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG 254 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDG 254 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeE--EcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCC
Confidence 37888888765543 3444556777777 9999998444432 3457999999887543322 223334568999999
Q ss_pred CcEEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCC-C--cEEEEeCCCcee
Q 002782 454 QNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-R--TACVWRLPDLVS 528 (882)
Q Consensus 454 ~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~d-g--~i~iwd~~~~~~ 528 (882)
+.++++.+.+| .|.+||+.+.. . ..+..+...+....|+|||+.|+..+.+ + .|+++|+.++..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~----------~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQ----------I-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCC----------E-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 86665656555 48888886542 1 1112233456789999999988776654 4 455557766644
Q ss_pred EEEEecccCceEEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCe---E
Q 002782 529 VVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL---V 602 (882)
Q Consensus 529 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~---i 602 (882)
..+..+........|+|||++|+..+.+ ..|.+||+.++... .+... .......|+|||++|+.++.++. +
T Consensus 324 -~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 -QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred -EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence 3334344456678999999998876543 35889999887643 33221 22345789999999999988764 6
Q ss_pred EEEEcCCCeeEEEeccCCCceEEEEEcC
Q 002782 603 KLWTVRTGECIATYDKHEDKIWALAVGK 630 (882)
Q Consensus 603 ~iwd~~~~~~~~~~~~h~~~v~~l~~s~ 630 (882)
.++++ +|.....+.+|.+.+...+|+|
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 77776 5666777878888888889987
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=4.7e-12 Score=121.90 Aligned_cols=291 Identities=18% Similarity=0.202 Sum_probs=183.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC--
Q 002782 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-- 178 (882)
Q Consensus 102 ~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~-- 178 (882)
...+..++|++.-.-+|++..|-.|++||-.. ++...++ ..+..|++++|-|.+.. .|+.|+..| |.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas-elavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS-ELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc-eeeeeecce-eEEEEcCcccc
Confidence 35677889999777788999999999999877 4444444 34667999999998654 577777766 999976421
Q ss_pred --eE----------EEEecCcccceEEEEEccCCCEEEEEeC-CCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcc
Q 002782 179 --KC----------VATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245 (882)
Q Consensus 179 --~~----------~~~l~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (882)
.. +..-.+| .+|++|.|.+||..+++++. |..|.+||.+++..+.-
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL-------------------- 233 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL-------------------- 233 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--------------------
Confidence 11 1122344 68999999999999988874 56777777765432210
Q ss_pred cccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeC
Q 002782 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (882)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (882)
T Consensus 234 -------------------------------------------------------------------------------- 233 (445)
T KOG2139|consen 234 -------------------------------------------------------------------------------- 233 (445)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeee
Q 002782 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC 405 (882)
Q Consensus 326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 405 (882)
.....+.+.-+.
T Consensus 234 ------------------------------------------------------------------~~~glgg~slLk-- 245 (445)
T KOG2139|consen 234 ------------------------------------------------------------------IPKGLGGFSLLK-- 245 (445)
T ss_pred ------------------------------------------------------------------cccCCCceeeEE--
Confidence 001111222233
Q ss_pred eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcc---
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM--- 482 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--- 482 (882)
++|++.. +++++-|+..++|+..............+.|...+|+|.|..+|++.+..-.+.-..+.........+.
T Consensus 246 wSPdgd~-lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 246 WSPDGDV-LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred EcCCCCE-EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccce
Confidence 8899998 778888999999965433222222334459999999999998888887665554443333211111111
Q ss_pred ------cccchhhhh---hcCCCeeEEEEcCCCcEEEEEcCCCc--------EEEEeCCCceeEEEEe-c--ccCceEEE
Q 002782 483 ------NLKAKAVVA---AHGKDINSLAVAPNDSLVCTGSQDRT--------ACVWRLPDLVSVVTFR-G--HKRGIWSV 542 (882)
Q Consensus 483 ------~~~~~~~~~---~~~~~i~~~~~s~~~~~la~~s~dg~--------i~iwd~~~~~~~~~~~-~--h~~~v~~l 542 (882)
.+....+.. --.+.+.+++|.|.|.++|+.-..+. |.+||....-.+.-.. + .......+
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence 111111111 12567899999999999998755433 6667765543322211 1 11224556
Q ss_pred EEcC---CCCEEEEeeCCCcEEEEec
Q 002782 543 EFSP---VDQVVITASGDKTIKIWSI 565 (882)
Q Consensus 543 ~~s~---~~~~l~s~~~d~~i~iwd~ 565 (882)
+|+| ++.+|..+=..|.+.-|++
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeee
Confidence 6665 4566666666677777765
No 236
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=1.3e-12 Score=124.76 Aligned_cols=193 Identities=18% Similarity=0.245 Sum_probs=119.6
Q ss_pred ccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCC------CCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCC
Q 002782 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS------DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD 515 (882)
Q Consensus 442 ~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~d 515 (882)
.-|++..|+|..-++++-.+..|+|++.|++... ...+.+........+..--..|..+.|+++|+++++-+.
T Consensus 214 eVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy- 292 (433)
T KOG1354|consen 214 EVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY- 292 (433)
T ss_pred HHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-
Confidence 4566777777766677777777888888776321 011111122233333444567899999999999998654
Q ss_pred CcEEEEeC-CCceeEEEEeccc------------Cce---EEEEEcCCCCEEEEeeCCCcEEEEecCCCce-eeEeecCc
Q 002782 516 RTACVWRL-PDLVSVVTFRGHK------------RGI---WSVEFSPVDQVVITASGDKTIKIWSISDGSC-LKTFEGHT 578 (882)
Q Consensus 516 g~i~iwd~-~~~~~~~~~~~h~------------~~v---~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~ 578 (882)
-+|++||+ ...+++.++.-|. ..| ..++|+.++..++||+....+++|++..|.. -.+++...
T Consensus 293 ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr 372 (433)
T KOG1354|consen 293 LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASR 372 (433)
T ss_pred ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccc
Confidence 58999999 5667777777663 222 4578999999999999999999999877643 23333222
Q ss_pred CC--EEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEE
Q 002782 579 SS--VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647 (882)
Q Consensus 579 ~~--v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 647 (882)
.. ...+ ..-+.+.+++......+| +..++ ....+...+|+|..+.+|.+..+. +.++
T Consensus 373 ~~~~~~~~---~k~~~V~~~g~r~~~~~~-------vd~ld-f~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 373 KNMKPRKV---LKLRLVSSSGKRKRDEIS-------VDALD-FRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred cCCccccc---ccceeeecCCCccccccc-------cchhh-hhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 11 1110 111233444443332221 11122 345567778999999999887765 4444
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.4e-12 Score=132.88 Aligned_cols=290 Identities=16% Similarity=0.148 Sum_probs=201.8
Q ss_pred CCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 002782 59 GSDTITALALSPDDKLL-FSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT 137 (882)
Q Consensus 59 ~~~~I~~l~~spd~~~l-as~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~ 137 (882)
+...-+.|..||||+|+ |+|..-..|++||+.+..+-..-.-....|.-.-.+.|-..++.-..|.+|-+..--+-...
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 56677999999999986 56777899999999876654433323456666666777666776677777765543222111
Q ss_pred EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEec
Q 002782 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (882)
Q Consensus 138 ~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~ 217 (882)
..+. ..-..++++.-... |+.++....|+-++++.|+.+..+....+.++++..++...+|++|+.+|.|-+||.
T Consensus 130 ~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 130 TRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 1111 12234445433333 666666677999999999999999888899999999999999999999999999999
Q ss_pred CCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeee
Q 002782 218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 297 (882)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~ 297 (882)
++.+.+.++.....+.+..
T Consensus 205 R~ksrv~~l~~~~~v~s~p------------------------------------------------------------- 223 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHP------------------------------------------------------------- 223 (703)
T ss_pred hhhhhheeeecccccCCCc-------------------------------------------------------------
Confidence 8877665554433221100
Q ss_pred eccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCc
Q 002782 298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 377 (882)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 377 (882)
.......++++.|..++-.+.+++.+|.+++|++... .+....-.++.-+|..+.|.+.+..--++......
T Consensus 224 --g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~------~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~ 295 (703)
T KOG2321|consen 224 --GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS------KPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRI 295 (703)
T ss_pred --cccccCcceEEEecCCceeEEeeccCCcEEEEEcccC------CceeecccCCccceeeecccccCCCceEEecchHH
Confidence 0112245677778777888888999999999988753 22334445566788889998776666666666689
Q ss_pred EEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEE
Q 002782 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (882)
Q Consensus 378 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 426 (882)
++|||-.+++....+....+ +..+. +.|++.. ++++..++.+..|
T Consensus 296 ~kiWd~~~Gk~~asiEpt~~-lND~C--~~p~sGm-~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 296 LKIWDECTGKPMASIEPTSD-LNDFC--FVPGSGM-FFTANESSKMHTY 340 (703)
T ss_pred hhhcccccCCceeeccccCC-cCcee--eecCCce-EEEecCCCcceeE
Confidence 99999999998877665443 55444 7788876 7777766655444
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=3.3e-12 Score=130.19 Aligned_cols=281 Identities=15% Similarity=0.177 Sum_probs=191.9
Q ss_pred ccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC
Q 002782 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (882)
Q Consensus 351 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 430 (882)
++......+..++++.-.+++|.....|++||+.+......-......|.-.- .+.+-.. ++.-..|.+|.+-....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~fei--LsDD~SK-~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEI--LSDDYSK-SVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEE--eccchhh-heEeecCceeeehhhcC
Confidence 45566678888887777888999999999999988765433322233333221 2222222 44445566665533221
Q ss_pred ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEE
Q 002782 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (882)
Q Consensus 431 ~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la 510 (882)
......+. ..-..++++.-.-. |..++....|+-+++..+. ....+......++++.+++...+|+
T Consensus 126 ~hy~~RIP---~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGr----------fL~P~~~~~~~lN~v~in~~hgLla 191 (703)
T KOG2321|consen 126 RHYRTRIP---KFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGR----------FLNPFETDSGELNVVSINEEHGLLA 191 (703)
T ss_pred eeeeeecC---cCCccccccCCCcc-EEEeecCcceEEEEccccc----------cccccccccccceeeeecCccceEE
Confidence 11100111 11223444332222 4445555567777777653 3333344457899999999999999
Q ss_pred EEcCCCcEEEEeCCCceeEEEEec------ccC-----ceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEee-cCc
Q 002782 511 TGSQDRTACVWRLPDLVSVVTFRG------HKR-----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHT 578 (882)
Q Consensus 511 ~~s~dg~i~iwd~~~~~~~~~~~~------h~~-----~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~ 578 (882)
+|+.+|.|..||.++...+.++.. |.. .|+++.|+.+|-.+++|..+|.|.|||++..+++..-. +..
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e 271 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE 271 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc
Confidence 999999999999988766666553 222 49999999999999999999999999999887765443 334
Q ss_pred CCEEEEEEEeCC--CEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782 579 SSVLRASFLTRG--AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 579 ~~v~~~~~s~~g--~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~ 650 (882)
-+|..+.|.+.+ ..++|.. ...++|||-.+|+....+. ....+..+++-|++.+++++-.++.+..|-+.
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred cceeeecccccCCCceEEecc-hHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 578888887653 4455443 3689999999999998887 45569999999999999999999888776554
No 239
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=2.9e-11 Score=114.81 Aligned_cols=104 Identities=21% Similarity=0.252 Sum_probs=82.1
Q ss_pred EEEeecCCeEEEEeCCCceE--EeeeecccccEEEEEEccCCCcEEEEeeCCCe-EEEEecCCCCCCCCCcccccchhhh
Q 002782 414 IVTGSKDNSVRLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT-IKVWSFDGLSDDAEQPMNLKAKAVV 490 (882)
Q Consensus 414 l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~ 490 (882)
..-|-.-|.|+|-|+...+. .....+|.+.|.|++.+.+|. ++|++|..|+ |++||..++....+ ...
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E--------~RR 222 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQE--------LRR 222 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeee--------eec
Confidence 34455679999999886655 366789999999999999987 8999999998 78999887642111 111
Q ss_pred hhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc
Q 002782 491 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL 526 (882)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~ 526 (882)
......|.+++|||+..+||++|..|++.||.+...
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 123357999999999999999999999999998653
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.7e-12 Score=139.95 Aligned_cols=239 Identities=13% Similarity=0.081 Sum_probs=156.2
Q ss_pred CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecC--CeEEEEeCCCceEEeeeecccccEEEEEEccCC
Q 002782 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (882)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~ 453 (882)
..|.++|... .....+..+...+.+.. ++|+|+.++++...+ ..|.+||+.+++.... ....+.+.+.+|+|+|
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~--wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPEPIISPA--WSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCCC-CCceEeccCCCCcccce--EcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCC
Confidence 4677777643 33344556667777777 899999844443332 4699999998865433 3334556789999999
Q ss_pred CcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CCcEEEEe--CCCceeEE
Q 002782 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWR--LPDLVSVV 530 (882)
Q Consensus 454 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg~i~iwd--~~~~~~~~ 530 (882)
+.++++.+.++...+|.++.... ....+..+........|+|||+.|+..+. ++...+|. +.++....
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGS---------GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCC---------CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence 87666788888888877653211 11112223344567889999998876654 45556664 44443322
Q ss_pred EEecccCceEEEEEcCCCCEEEEeeCCC---cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCC---eEEE
Q 002782 531 TFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LVKL 604 (882)
Q Consensus 531 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg---~i~i 604 (882)
+..+........|||||++|+..+.++ .|.+||+.+++...... + .......|+|||++|+.++.++ .+.+
T Consensus 323 -lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 323 -VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred -EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 222223345678999999998876654 69999998876543322 2 2345689999999998877654 3555
Q ss_pred EEcCCCeeEEEeccCCCceEEEEEcCC
Q 002782 605 WTVRTGECIATYDKHEDKIWALAVGKK 631 (882)
Q Consensus 605 wd~~~~~~~~~~~~h~~~v~~l~~s~~ 631 (882)
.++ +|.....+..+.+.+...+|+|-
T Consensus 400 ~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 400 VSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEC-CCCceEEeecCCCCCCCCccCCC
Confidence 566 56666666667777777888773
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=3e-12 Score=121.92 Aligned_cols=151 Identities=19% Similarity=0.322 Sum_probs=112.5
Q ss_pred ceEEccCCCEEEEEeCC-----------eEEEEEc--CCCceeeeecC-CCccEEEEEEcCCCCEEEEE--eCCCcEEEE
Q 002782 24 PLVVSSDGSFIACACGE-----------SINIVDL--SNASIKSTIEG-GSDTITALALSPDDKLLFSS--GHSREIRVW 87 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~-----------~I~i~d~--~~~~~~~~l~~-~~~~I~~l~~spd~~~las~--~~dg~i~iw 87 (882)
.+.|+|+|++|++-... ...+|.+ ... ....+.- ..++|.+++|+|+|+.+|+. ..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 57899999998876551 2444444 333 3444433 34579999999999987665 356799999
Q ss_pred ECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEE
Q 002782 88 DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA---DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG 164 (882)
Q Consensus 88 d~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~---dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sg 164 (882)
|++ ++.+..+. ..++..+.|+|+|++|++|+. .|.|.+||+.+.+.+.... | ..++.++|+|+|+. ++++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~--~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRY--LATA 161 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCE--EEEE
Confidence 996 66666664 578889999999999999874 3679999999988887765 3 34789999999876 6655
Q ss_pred e------CCCcEEEEECCCCeEEEE
Q 002782 165 S------DDATVRVWDLLAKKCVAT 183 (882)
Q Consensus 165 s------~dg~I~vwd~~~~~~~~~ 183 (882)
+ .|+.++||+.. |+.+..
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEe
Confidence 4 37889999984 555544
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=3.8e-11 Score=122.79 Aligned_cols=317 Identities=14% Similarity=0.184 Sum_probs=195.9
Q ss_pred CCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEE-----eC-----CCcEEEEECCC
Q 002782 22 GGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-----GH-----SREIRVWDLST 91 (882)
Q Consensus 22 g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~-----~~-----dg~i~iwd~~~ 91 (882)
....++|++|+++|++.++.|.|++..++..+.+...- .+.++.|||-|.+|.+- .. ...+.+|++++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet 114 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET 114 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence 34688999999999999999999999998655544432 78999999999999863 11 34688999999
Q ss_pred CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEE-----EeC
Q 002782 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS-----GSD 166 (882)
Q Consensus 92 ~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~s-----gs~ 166 (882)
+.....+......-++..|++|..+.|-- ..+.+.+|+..+-... .-+-|...|+.+.++|.+....+++ ++.
T Consensus 115 ~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 115 GVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred ceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCC
Confidence 66555554322222689999998754432 3477999999773322 2233678899999999866555554 355
Q ss_pred CCcEEEEECCCCeEEEEec---CcccceEEEEEccCCCEEEE-Ee--CCC---------eEEEEecCCceeeeeecCcce
Q 002782 167 DATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLIS-AG--RDK---------VVNLWDLRDYSCKLTVPTYEM 231 (882)
Q Consensus 167 dg~I~vwd~~~~~~~~~l~---~h~~~v~~l~~s~~~~~l~s-~~--~dg---------~i~vwd~~~~~~~~~~~~~~~ 231 (882)
-+.|++|.+.....-..+. -....=..+.|++-|.-|+. ++ -|. ++++.++...++...+.
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~---- 268 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL---- 268 (566)
T ss_pred CcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC----
Confidence 6789999876322111110 01112234667766653332 22 122 12222222111111111
Q ss_pred eeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEE
Q 002782 232 VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAAT 311 (882)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (882)
T Consensus 269 -------------------------------------------------------------------------------- 268 (566)
T KOG2315|consen 269 -------------------------------------------------------------------------------- 268 (566)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEE-EEcCCcEEEEeCCCceeee
Q 002782 312 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV-ATNIEQVQVYDLSSMSCSY 390 (882)
Q Consensus 312 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~~~i~i~d~~~~~~~~ 390 (882)
..++|.++.|++....+.++ |..-..+.+||+...-.
T Consensus 269 ----------------------------------------k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-- 306 (566)
T KOG2315|consen 269 ----------------------------------------KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-- 306 (566)
T ss_pred ----------------------------------------CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe--
Confidence 13455566665543333332 23345566666543322
Q ss_pred eeeCCCcceEEeeeeeecCCCEEEEEeec--CCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEee-C-----
Q 002782 391 VLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-S----- 462 (882)
Q Consensus 391 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~-~----- 462 (882)
+.-..++-.++- ++|.|+.++++|-. .|.|-+||..+.+++..+.... -+-+.|+|+|+ ++++++ .
T Consensus 307 -~df~egpRN~~~--fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe-~flTATTaPRlrv 380 (566)
T KOG2315|consen 307 -FDFPEGPRNTAF--FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGE-YFLTATTAPRLRV 380 (566)
T ss_pred -EeCCCCCccceE--ECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCc-EEEEEeccccEEe
Confidence 222233344444 88999986666644 4899999999988887766544 35578999999 455554 2
Q ss_pred CCeEEEEecCCC
Q 002782 463 DHTIKVWSFDGL 474 (882)
Q Consensus 463 dg~i~~wd~~~~ 474 (882)
|+.++||+....
T Consensus 381 dNg~KiwhytG~ 392 (566)
T KOG2315|consen 381 DNGIKIWHYTGS 392 (566)
T ss_pred cCCeEEEEecCc
Confidence 788999998753
No 243
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.2e-12 Score=139.93 Aligned_cols=235 Identities=16% Similarity=0.100 Sum_probs=157.2
Q ss_pred CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEee---cCCeEEEEeCCCceEEeeeecccccEEEEEEccC
Q 002782 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS---KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (882)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~ 452 (882)
..|.+||..... ...+..+...+.+.. ++|+|+. ++..+ .+..|++||+.+++.... ....+...+..|+|+
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~--wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPA--WSPDGKK-LAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCcccccc--CCCCCCE-EEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCC
Confidence 368888875443 344555666777777 8999998 55444 234699999988765433 333445567899999
Q ss_pred CCcEEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CCc--EEEEeCCCce
Q 002782 453 LQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRT--ACVWRLPDLV 527 (882)
Q Consensus 453 ~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg~--i~iwd~~~~~ 527 (882)
|+.++++.+.+| .|.+||+.++. ...+..+.......+|+|||+.|+..+. +|. |+++++.+++
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 987666766666 58888886542 1112223334567899999998887663 444 7777777665
Q ss_pred eEEEEecccCceEEEEEcCCCCEEEEeeCCC---cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecC---Ce
Q 002782 528 SVVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GL 601 (882)
Q Consensus 528 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~ 601 (882)
... +..+.......+|+|||+.|+..+.++ .|.+||+.++... .+. +........|+|||++++..+.+ +.
T Consensus 328 ~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 328 AER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred eEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence 432 222333455789999999998765443 6999999887654 333 22234567999999998777664 36
Q ss_pred EEEEEcCCCeeEEEeccCCCceEEEEEcC
Q 002782 602 VKLWTVRTGECIATYDKHEDKIWALAVGK 630 (882)
Q Consensus 602 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~ 630 (882)
|.++++. |.....+..+.+.+...+|+|
T Consensus 405 L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 8888874 455566665667777778876
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=2.2e-12 Score=122.80 Aligned_cols=149 Identities=19% Similarity=0.281 Sum_probs=112.9
Q ss_pred eEEEEcCCCcEEEEEcC----------CCcEEEEeCCC-ceeEEEEec-ccCceEEEEEcCCCCEEEEe--eCCCcEEEE
Q 002782 498 NSLAVAPNDSLVCTGSQ----------DRTACVWRLPD-LVSVVTFRG-HKRGIWSVEFSPVDQVVITA--SGDKTIKIW 563 (882)
Q Consensus 498 ~~~~~s~~~~~la~~s~----------dg~i~iwd~~~-~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~--~~d~~i~iw 563 (882)
..+.|+|+|.+|++-.. -+...+|.++. ......+.- ..++|.+++|+|+|+.+++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999988776443 12355555522 233334432 34579999999999987654 456799999
Q ss_pred ecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecC---CeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeC
Q 002782 564 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS 640 (882)
Q Consensus 564 d~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 640 (882)
|++ ++.+..+. ...+..+.|+|+|++|++++.+ |.|.+||+++.+++.+.. |. .+..++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEe
Confidence 996 67777764 5677889999999999998754 679999999999998876 33 4789999999999999874
Q ss_pred ------CCCEEEEECCC
Q 002782 641 ------DALVNLWHDST 651 (882)
Q Consensus 641 ------dg~i~iw~~~~ 651 (882)
|..++||+...
T Consensus 164 ~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ccceeccccEEEEEecC
Confidence 78899999864
No 245
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=6.7e-12 Score=136.62 Aligned_cols=189 Identities=17% Similarity=0.150 Sum_probs=132.0
Q ss_pred ceEEccCCCEEEEEeC----CeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCeeEE
Q 002782 24 PLVVSSDGSFIACACG----ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GHSR--EIRVWDLSTLKCLR 96 (882)
Q Consensus 24 ~va~s~dg~~la~~~~----~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~-~~dg--~i~iwd~~~~~~~~ 96 (882)
..+|||||+.|++... ..|.+||+.+|+..... .....+.+++|||||+.|+.. +.+| .|.+||+.+++..+
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~ 281 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ 281 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 6899999999998642 27999999988644322 222334578999999988865 4444 59999999887654
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEe-CC--CcE
Q 002782 97 SWKGHDGPAIGMACHPSGGLLATAGAD-R--KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS-DD--ATV 170 (882)
Q Consensus 97 ~~~~h~~~V~~l~fs~~~~~lasg~~d-g--~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs-~d--g~I 170 (882)
. ..+...+....|+|||+.|+..+.+ + .|.++|+.++.. ..+..+........|+||++. ++..+ .+ ..|
T Consensus 282 l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~--Ia~~~~~~g~~~I 357 (429)
T PRK03629 282 V-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKF--MVMVSSNGGQQHI 357 (429)
T ss_pred c-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCE--EEEEEccCCCceE
Confidence 4 4445677889999999999887754 3 455557777654 344444455677899999875 44433 33 358
Q ss_pred EEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCe---EEEEecCC
Q 002782 171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV---VNLWDLRD 219 (882)
Q Consensus 171 ~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~---i~vwd~~~ 219 (882)
.+||+.++... .+... .......|+|||+.|+.++.++. +.+++++.
T Consensus 358 ~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 358 AKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred EEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 88999888644 33322 23446789999999999987764 66777643
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=5.1e-12 Score=123.18 Aligned_cols=211 Identities=16% Similarity=0.187 Sum_probs=159.1
Q ss_pred eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCce----eeeeeeCCCcceEEeeeeeecCCCEEEEEeecC--C
Q 002782 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS----CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--N 421 (882)
Q Consensus 348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--g 421 (882)
...+....|..+.. .+..|+++..+|.+.+|....+. ....+..+ ..+..+. -.+....++++|+.. .
T Consensus 100 ~~~l~~~~I~gl~~---~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r--~~~~~p~Iva~GGke~~n 173 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKL---ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVR--QTDTDPYIVATGGKENIN 173 (412)
T ss_pred ccccccccccchhh---cCCEEEEEecCCcEEEEeccCCccccccceeeecC-Cceeeec--cCCCCCceEecCchhccc
Confidence 34445556666655 34578888999999999988443 22233333 3333443 445666668889998 8
Q ss_pred eEEEEeCCCceEEeeeecc---------cccEEEEEEccC-CCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhh
Q 002782 422 SVRLWDSESRCCVGVGTGH---------MGAVGAVAFSKK-LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (882)
Q Consensus 422 ~i~iwd~~~~~~~~~~~~~---------~~~v~~v~~s~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 491 (882)
.+.+||+...+.+.....- .-.++++.|.+. ....|++++.-+.+++||...... +...+.
T Consensus 174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR---------PV~~fd 244 (412)
T KOG3881|consen 174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR---------PVAQFD 244 (412)
T ss_pred ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc---------ceeEec
Confidence 8999999988655443321 124566777665 234799999999999999885432 333344
Q ss_pred hcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEE-EecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCce
Q 002782 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 570 (882)
Q Consensus 492 ~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 570 (882)
....+++++...|+|+++++|..-|.+..||++.++.... +.+-.+.|.++..+|..++|++++-|..|||+|+++.++
T Consensus 245 ~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 245 FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 4577899999999999999999999999999999999887 888999999999999999999999999999999998666
Q ss_pred eeE
Q 002782 571 LKT 573 (882)
Q Consensus 571 ~~~ 573 (882)
+..
T Consensus 325 l~k 327 (412)
T KOG3881|consen 325 LHK 327 (412)
T ss_pred hhh
Confidence 543
No 247
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.5e-11 Score=134.97 Aligned_cols=235 Identities=12% Similarity=0.009 Sum_probs=157.4
Q ss_pred CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEee--cCCeEEEEeCCCceEEeeeecccccEEEEEEccCC
Q 002782 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (882)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~ 453 (882)
..|.++|.... ....+..|...+.+.. ++|+|+.++.+.. .+..|.+||+.++... .+..+.+.+...+|+|+|
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~--wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPR--FSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeE--ECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCC
Confidence 47888887544 3445667777888888 9999998444432 3468999999888654 344556677889999999
Q ss_pred CcEEEEeeCCCe--EEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CC--cEEEEeCCCcee
Q 002782 454 QNFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVS 528 (882)
Q Consensus 454 ~~~l~s~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg--~i~iwd~~~~~~ 528 (882)
+.++++.+.++. |.+||+.+.. ...+..+........|+|||+.|+..+. +| .|+++|+.++..
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~-----------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT-----------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc-----------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 877777777766 5556765432 1112224445667899999998887663 33 688889876654
Q ss_pred EEEEecccCceEEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecC------
Q 002782 529 VVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD------ 599 (882)
Q Consensus 529 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------ 599 (882)
. .+..+...+....|+|||+.|+..+.+ ..|.+||+..+.. +.+. ....+....|+|||++|+..+.+
T Consensus 327 ~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 327 R-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGA 403 (435)
T ss_pred E-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence 3 333345556778999999999877643 3688889865543 3332 22346678999999998776543
Q ss_pred CeEEEEEcCCCeeEEEeccCCCceEEEEEcC
Q 002782 600 GLVKLWTVRTGECIATYDKHEDKIWALAVGK 630 (882)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~ 630 (882)
..+.++|+..+.. ..+. ..+.+...+|+|
T Consensus 404 ~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 404 PKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred ceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 2577788765544 3444 244566667766
No 248
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.1e-10 Score=118.75 Aligned_cols=157 Identities=12% Similarity=0.160 Sum_probs=110.6
Q ss_pred EEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEe
Q 002782 42 INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG 121 (882)
Q Consensus 42 I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~ 121 (882)
...|+.........-...+-.-+-+.|||-|.||++-...| |.+|--++...++.|. | ..|.-+.|||..+||+|-+
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s 268 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYS 268 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEec
Confidence 55676554432222222334568899999999999987754 8899877777777775 4 5688999999999999976
Q ss_pred C-----------CCcEEEEECCCCeEEEEeecC--CCcE-EEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCc
Q 002782 122 A-----------DRKVLVWDVDGGFCTHYFKGH--KGVV-SSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH 187 (882)
Q Consensus 122 ~-----------dg~v~vwd~~~~~~~~~~~~h--~~~V-~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h 187 (882)
. ...++|||+.+|.....|... ...+ .-..||.|+.+ +|.-.. ..|.||+..+..++..-.-.
T Consensus 269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy--~Arm~~-~sisIyEtpsf~lld~Kslk 345 (698)
T KOG2314|consen 269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY--FARMTG-NSISIYETPSFMLLDKKSLK 345 (698)
T ss_pred CCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCce--eEEecc-ceEEEEecCceeeecccccC
Confidence 2 257999999999988877652 2222 34678988765 665555 45999987765544333334
Q ss_pred ccceEEEEEccCCCEEE
Q 002782 188 FSRVTSMAITSDGSTLI 204 (882)
Q Consensus 188 ~~~v~~l~~s~~~~~l~ 204 (882)
.+.|....|+|.+..|+
T Consensus 346 i~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 346 ISGIRDFSWSPTSNLLA 362 (698)
T ss_pred CccccCcccCCCcceEE
Confidence 56788899999866554
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=3e-10 Score=118.81 Aligned_cols=496 Identities=16% Similarity=0.195 Sum_probs=266.9
Q ss_pred ceEEccCCCEEEEEeCC-eEEEEEcCCCc---------------eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 002782 24 PLVVSSDGSFIACACGE-SINIVDLSNAS---------------IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVW 87 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~---------------~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iw 87 (882)
+++|+....|+|+|+.+ -+.+..+.+.. .-++++||.+.|.-+.|..+.+.|-+...+|.|.+|
T Consensus 19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVW 98 (1189)
T KOG2041|consen 19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVW 98 (1189)
T ss_pred EEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEE
Confidence 68999999999999876 56676654321 225788999999999999999999999999999999
Q ss_pred ECCCCeeEEEee--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeecCCCcEEEEEEecCC--------
Q 002782 88 DLSTLKCLRSWK--GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-YFKGHKGVVSSILFHPDT-------- 156 (882)
Q Consensus 88 d~~~~~~~~~~~--~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~-~~~~h~~~V~~l~f~~~~-------- 156 (882)
-+-.|.-..... -.++.|.+|+|..||+.++....||.|.|=.+++.+.-. .+++ .....+.|++|.
T Consensus 99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~a 176 (1189)
T KOG2041|consen 99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKA 176 (1189)
T ss_pred eeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhc
Confidence 987775433322 245789999999999999999999988876665443110 0110 011122333332
Q ss_pred ---------------------------------------------------CccEEEEEeCCCcEEEEECCCCeEEEEec
Q 002782 157 ---------------------------------------------------DKSLLFSGSDDATVRVWDLLAKKCVATLD 185 (882)
Q Consensus 157 ---------------------------------------------------~~~~l~sgs~dg~I~vwd~~~~~~~~~l~ 185 (882)
++..|+.+...|.+.+-.-.+......+.
T Consensus 177 nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d 256 (1189)
T KOG2041|consen 177 NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD 256 (1189)
T ss_pred CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe
Confidence 22345555555555554332221111111
Q ss_pred CcccceEEEEEccCCCEEEEEeCCC---------eEEEEecCCceeeeeecCcc-eeeEEEecCCCCCcccccccchhhh
Q 002782 186 KHFSRVTSMAITSDGSTLISAGRDK---------VVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQT 255 (882)
Q Consensus 186 ~h~~~v~~l~~s~~~~~l~s~~~dg---------~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (882)
..-.+....|+++|..|+.+|.+. .|.++.. -+....++..+. .+.++++-..+-.++-...++--..
T Consensus 257 -tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyfa 334 (1189)
T KOG2041|consen 257 -TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFA 334 (1189)
T ss_pred -cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecceEEEE
Confidence 113577889999999999998653 2333322 222333333222 3444444333322211111110000
Q ss_pred hhccccc-----cceEEEEEcCC---CeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCe
Q 002782 256 IKKKRRS-----LEIHFITVGER---GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQ 327 (882)
Q Consensus 256 ~~~~~~~-----~~~~~~~~~~~---g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 327 (882)
..+..-. ....++-.+.+ -.|.+||..+..-+... -..+..+++..+.--++.-..++.
T Consensus 335 nIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~-------------V~~~~~~a~~~ehCvL~~~~d~~~ 401 (1189)
T KOG2041|consen 335 NIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT-------------VTHFENMAFYREHCVLINRQDDGV 401 (1189)
T ss_pred eecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh-------------hcceeehheecccEEEEeccccCC
Confidence 0000000 00011111111 12445554443110000 011122222222222222233344
Q ss_pred EEEEEecccccccceeeeeeeec-ccCCceEE--EEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeC---CCcceEE
Q 002782 328 LLLYTTVEVPEKKMELILSKRLV-GYNEEILD--LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG---HSEIVLC 401 (882)
Q Consensus 328 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~--~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~v~~ 401 (882)
+.-++..+.......+.+...+. ......++ -.|..-++..++.++. ..+.+|.....+....+.+ |...-..
T Consensus 402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~-e~~~iWhy~~pK~~s~l~~~k~rkegr~h 480 (1189)
T KOG2041|consen 402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASE-ERYFIWHYVLPKFNSVLAGVKIRKEGRFH 480 (1189)
T ss_pred CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEecc-ccEEEEEEeccchhhhhhhhhhccccccc
Confidence 44332222211111111111110 01111122 2344445666666666 6788888765544433332 1111111
Q ss_pred eeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCc
Q 002782 402 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481 (882)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 481 (882)
.+ . .-+|+.|+.+. .. ..++.+...+|.+++.+.. ++..+-..|.|.-+.++...
T Consensus 481 ~D--d-------tp~ga~d~~l~---ys----~kt~~G~~DpICAl~~sdk---~l~vareSG~I~rySl~nv~------ 535 (1189)
T KOG2041|consen 481 GD--D-------TPEGAQDRTLE---YS----TKTLLGSKDPICALCISDK---FLMVARESGGIYRYSLNNVV------ 535 (1189)
T ss_pred CC--C-------Cccchhhceee---cc----ceeeccCCCcceeeeecce---EEEEEeccCceEEEEeccee------
Confidence 11 1 23344454432 22 2345677889999998864 89999999999999987642
Q ss_pred ccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC---CceeEE-EEecccCceEEEEEcCCCCEEEEeeCC
Q 002782 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP---DLVSVV-TFRGHKRGIWSVEFSPVDQVVITASGD 557 (882)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~---~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~d 557 (882)
......-...+.++++.-+...+|.-..-|.+.+.|+. ++..+. .+......||.+.|..|...+++--.-
T Consensus 536 -----l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeK 610 (1189)
T KOG2041|consen 536 -----LTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEK 610 (1189)
T ss_pred -----eeeccccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhh
Confidence 11112234567888888888889988888889988876 334433 444567789999999988777766665
Q ss_pred CcEEEEecCC
Q 002782 558 KTIKIWSISD 567 (882)
Q Consensus 558 ~~i~iwd~~~ 567 (882)
..+.|++-.+
T Consensus 611 trmyifrgnd 620 (1189)
T KOG2041|consen 611 TRMYIFRGND 620 (1189)
T ss_pred ceEEEecCcC
Confidence 6677776433
No 250
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3.2e-11 Score=132.32 Aligned_cols=215 Identities=9% Similarity=-0.026 Sum_probs=146.5
Q ss_pred CeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEee--CCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCee
Q 002782 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (882)
Q Consensus 421 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (882)
..|.++|..... ...+..|...+.+.+|+|+|+.++.+.. .+..|.+||+.++.. ..+..+...+.
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-----------~~l~~~~g~~~ 249 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-----------ELVGNFPGMTF 249 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----------EEeecCCCccc
Confidence 378888886543 3445677889999999999985444332 346899999876521 11223445667
Q ss_pred EEEEcCCCcEEE-EEcCCCc--EEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC-C--CcEEEEecCCCceee
Q 002782 499 SLAVAPNDSLVC-TGSQDRT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-D--KTIKIWSISDGSCLK 572 (882)
Q Consensus 499 ~~~~s~~~~~la-~~s~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d--~~i~iwd~~~~~~~~ 572 (882)
+.+|+|||+.|+ +.+.++. |++||+.++.. ..+..+........|+|||+.|+..+. + ..|++||+.++...
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~- 327 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR- 327 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-
Confidence 889999998776 4555554 77789887755 445556666778999999998887664 3 36888898766543
Q ss_pred EeecCcCCEEEEEEEeCCCEEEEeecC---CeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCC------CC
Q 002782 573 TFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD------AL 643 (882)
Q Consensus 573 ~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------g~ 643 (882)
.+..+...+....|+|||++|+..+.+ ..|.+||+..+.. ..+. ....+..+.|+|||++|+..+.+ ..
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~ 405 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPK 405 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence 333344556678899999999887653 3688889765543 3333 22346778999999988765543 24
Q ss_pred EEEEECCC
Q 002782 644 VNLWHDST 651 (882)
Q Consensus 644 i~iw~~~~ 651 (882)
|.++++..
T Consensus 406 L~~~dl~g 413 (435)
T PRK05137 406 LYTVDLTG 413 (435)
T ss_pred EEEEECCC
Confidence 66666654
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.42 E-value=8.7e-12 Score=128.53 Aligned_cols=208 Identities=11% Similarity=0.186 Sum_probs=163.1
Q ss_pred EEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhh
Q 002782 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (882)
Q Consensus 413 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 492 (882)
++|....||.+++|+..+++....+. |. +..+..++-..|.+.... .+..... ...
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~------------p~-----~~~s~t~~~~~w~L~~~~----s~~k~~~--~~~- 62 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFA------------PI-----ASLSGTCTYTKWGLSADY----SPMKWLS--LEK- 62 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeec------------cc-----hhccCcceeEEEEEEecc----chHHHHh--HHH-
Confidence 48999999999999999887765543 21 223333445566643221 0111111 111
Q ss_pred cCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEe--cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCce
Q 002782 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 570 (882)
Q Consensus 493 ~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 570 (882)
....+.+-..++-|...|.|.+|+...++....+. .|.++|.++.++.+-.+|.+++.|+.+..|+..++..
T Consensus 63 ------~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 63 ------AKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred ------HhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 11123455678889999999999999999888877 4999999999999999999999999999999999999
Q ss_pred eeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCC-----CCEEEE-EeCCCCE
Q 002782 571 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK-----TEMFAT-GGSDALV 644 (882)
Q Consensus 571 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~l~s-~~~dg~i 644 (882)
++.+.+....+..++.+|||..|++++ +.|++||+.+++.+.+|.+|.++|.++.|..+ |.++.+ ...+..+
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 999999999999999999999999887 68999999999999999999999999999877 566554 5566778
Q ss_pred EEEECCCH
Q 002782 645 NLWHDSTA 652 (882)
Q Consensus 645 ~iw~~~~~ 652 (882)
.+|....+
T Consensus 215 ~~w~v~~~ 222 (541)
T KOG4547|consen 215 TVWVVEKE 222 (541)
T ss_pred eEEEEEcc
Confidence 99987754
No 252
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.4e-11 Score=134.42 Aligned_cols=206 Identities=12% Similarity=0.071 Sum_probs=133.7
Q ss_pred CeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCC--CeEEEEecCCCCCCCCCcccccchhhhhhcCCCee
Q 002782 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (882)
Q Consensus 421 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (882)
..+.++|.... ....+..+...+.+.+|+|+|+.++++...+ ..|.+||+.++.. ..+......+.
T Consensus 176 ~~L~~~D~dG~-~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-----------~~l~~~~g~~~ 243 (427)
T PRK02889 176 YQLQISDADGQ-NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-----------RVVANFKGSNS 243 (427)
T ss_pred cEEEEECCCCC-CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-----------EEeecCCCCcc
Confidence 45777777443 3334456777899999999998544433222 4599999876521 11111233456
Q ss_pred EEEEcCCCcEEE-EEcCCCcEEEEe--CCCceeEEEEecccCceEEEEEcCCCCEEEEeeC-CCcEEEEec--CCCceee
Q 002782 499 SLAVAPNDSLVC-TGSQDRTACVWR--LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSI--SDGSCLK 572 (882)
Q Consensus 499 ~~~~s~~~~~la-~~s~dg~i~iwd--~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d~~i~iwd~--~~~~~~~ 572 (882)
+.+|+|||+.|+ +.+.++...||. +.++. ...+..+........|+|||+.|+..+. ++...+|.+ .++....
T Consensus 244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred ceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence 899999998887 466777766654 44443 4445545555677899999998876654 455666654 4444322
Q ss_pred EeecCcCCEEEEEEEeCCCEEEEeecCC---eEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCC
Q 002782 573 TFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA 642 (882)
Q Consensus 573 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 642 (882)
+..+........|+|||++|+..+.++ .|.+||+.+++...... ........|+|||++|+.++.++
T Consensus 323 -lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 323 -VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecC
Confidence 222223344578999999998877654 69999998887543322 22346789999999988776554
No 253
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=4.8e-11 Score=130.71 Aligned_cols=195 Identities=21% Similarity=0.205 Sum_probs=133.5
Q ss_pred eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEE
Q 002782 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH---SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL 117 (882)
Q Consensus 41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~---dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~l 117 (882)
.|.+||...+. .+.+..+...+.+.+|||||+.|+.++. +..|.+||+.+++... +..+.+...+.+|+|||+.|
T Consensus 185 ~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 185 ALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence 58999986544 4455567778999999999999998763 3479999998887543 33344556688999999987
Q ss_pred EE-EeCCC--cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEe-CCCc--EEEEECCCCeEEEEecCcccce
Q 002782 118 AT-AGADR--KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS-DDAT--VRVWDLLAKKCVATLDKHFSRV 191 (882)
Q Consensus 118 as-g~~dg--~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs-~dg~--I~vwd~~~~~~~~~l~~h~~~v 191 (882)
+. .+.+| .|.+||+.++... .+..+.......+|+||++. ++.++ .+|. |.++|+.+++... +..+....
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~ 338 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYN 338 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCeEE-eecCCCCc
Confidence 64 44444 5999999988753 45556666678899999765 44444 4454 6677777765432 22233345
Q ss_pred EEEEEccCCCEEEEEeCCC---eEEEEecCCceeeeeecCcceeeEEEecCCCC
Q 002782 192 TSMAITSDGSTLISAGRDK---VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 242 (882)
Q Consensus 192 ~~l~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (882)
...+|+|+|++++..+.++ .|.+||+.++... .+..........+.+++.
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~ 391 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGS 391 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCC
Confidence 5789999999998776443 6999999776543 222222233445666654
No 254
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.9e-10 Score=114.87 Aligned_cols=260 Identities=10% Similarity=0.107 Sum_probs=161.0
Q ss_pred CcEEEEeCCCceeeeeeeCC--CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCC
Q 002782 376 EQVQVYDLSSMSCSYVLAGH--SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (882)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~ 453 (882)
..+.|||+.+|...+.+... ...+..+ +-++.++++ +|.-.. .+|.||+..+-.++..-.-.-..|....|+|.+
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~-frWS~DdKy-~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPI-FRWSHDDKY-FARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTS 358 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccce-EEeccCCce-eEEecc-ceEEEEecCceeeecccccCCccccCcccCCCc
Confidence 57899999999988877763 2233332 126778876 555444 578999988765554444455678888999986
Q ss_pred CcEEEEeeCC-----CeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEc----------CCCcE
Q 002782 454 QNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS----------QDRTA 518 (882)
Q Consensus 454 ~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s----------~dg~i 518 (882)
. +|+--... ..+.+-.++... ...+..-+.-.=..+-|-.+|.+|+.-- .-..+
T Consensus 359 ~-llAYwtpe~~~~parvtL~evPs~~----------~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 359 N-LLAYWTPETNNIPARVTLMEVPSKR----------EIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNL 427 (698)
T ss_pred c-eEEEEcccccCCcceEEEEecCccc----------eeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeE
Confidence 5 44432211 223333333221 1111122222223456667888887532 11235
Q ss_pred EEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC---CCcEEEEecCC----CceeeEeecCcCCEEEEEEEeCCC
Q 002782 519 CVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG---DKTIKIWSISD----GSCLKTFEGHTSSVLRASFLTRGA 591 (882)
Q Consensus 519 ~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---d~~i~iwd~~~----~~~~~~~~~h~~~v~~~~~s~~g~ 591 (882)
.|+.++..........-...|...+|-|.|..+++-+. ..++.+|.+.+ .+.+..+.. ...+.+.|+|.|+
T Consensus 428 eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~ 505 (698)
T KOG2314|consen 428 EIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGR 505 (698)
T ss_pred EEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCc
Confidence 56666554333333335678999999999987776654 35788998773 234455543 4566789999999
Q ss_pred EEEEee---cCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeC------CCCEEEEECCC
Q 002782 592 QIVSCG---ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS------DALVNLWHDST 651 (882)
Q Consensus 592 ~l~s~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~------dg~i~iw~~~~ 651 (882)
+++.+. ..|.+.++|.....+..+-.......+.+-|.|.|+|++|++. |.-.++|+...
T Consensus 506 fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 506 FVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 987764 4688999998754443332222334577899999999999875 44457777654
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=2.1e-11 Score=116.81 Aligned_cols=249 Identities=16% Similarity=0.299 Sum_probs=174.0
Q ss_pred eeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeC-CCceeeeeee-CCCcceEEeeeeeecCCCEEEEEeec
Q 002782 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSK 419 (882)
Q Consensus 342 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~ 419 (882)
+......+.|+.+.+.+....| ...-++..+.|..+++|-- ++++.-..+. .-..++.++. +.++... |+.|-.
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~--y~~e~~~-L~vg~~ 88 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAME--YVSESRR-LYVGQD 88 (404)
T ss_pred chhhhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEee--eeccceE-EEEEEe
Confidence 3444566778888887777776 5567788888999999964 3343322221 2234455555 6677766 999999
Q ss_pred CCeEEEEeC----CCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC
Q 002782 420 DNSVRLWDS----ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (882)
Q Consensus 420 dg~i~iwd~----~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (882)
+|++.-+.+ +.....+....|...+..+.|+.... .+++.+.|..+. |......... ..... ..
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~-~hc~e~~~~l-g~Y~~---------~~ 156 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFA-WHCTESGNRL-GGYNF---------ET 156 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceE-EEeeccCCcc-cceEe---------ec
Confidence 999988854 44556667778999999999987755 788888887654 4432211000 00000 00
Q ss_pred CeeEEEEcCCCcEEEEEcCCCcEEEEeC--CCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCce-ee
Q 002782 496 DINSLAVAPNDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC-LK 572 (882)
Q Consensus 496 ~i~~~~~s~~~~~la~~s~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~ 572 (882)
..+++.+.-. +...|...|.|..-.+ ....++.++.+|..++.+++|.|....|.+|..|..+.+||+.-++- ..
T Consensus 157 ~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~ 234 (404)
T KOG1409|consen 157 PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY 234 (404)
T ss_pred cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee
Confidence 1111111111 4555666666655544 45578889999999999999999999999999999999999976543 45
Q ss_pred EeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782 573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (882)
Q Consensus 573 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 608 (882)
.+.+|.+.|..+...+--+.|++++.||.|.+|+.+
T Consensus 235 el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 235 ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred eeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 678899999999998888999999999999999974
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.39 E-value=2.5e-07 Score=108.63 Aligned_cols=463 Identities=16% Similarity=0.178 Sum_probs=252.7
Q ss_pred ceEEccCCCEEEEE-eCCeEEEE----EcCCCc--eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC------
Q 002782 24 PLVVSSDGSFIACA-CGESINIV----DLSNAS--IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS------ 90 (882)
Q Consensus 24 ~va~s~dg~~la~~-~~~~I~i~----d~~~~~--~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~------ 90 (882)
++.+-+|..-++++ .++.|.++ +..+.. .+..+ ...|.|++||||+..||..+.+++|.+-+-.
T Consensus 80 s~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E 156 (928)
T PF04762_consen 80 SFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISE 156 (928)
T ss_pred EEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEE
Confidence 45566777644444 45677777 444333 33333 4589999999999999999999988876421
Q ss_pred ---------C--------CeeEEEeec------------------------CCCCEEEEEEcCCCCEEEEEeC---C---
Q 002782 91 ---------T--------LKCLRSWKG------------------------HDGPAIGMACHPSGGLLATAGA---D--- 123 (882)
Q Consensus 91 ---------~--------~~~~~~~~~------------------------h~~~V~~l~fs~~~~~lasg~~---d--- 123 (882)
. |+.-..|+| +...-..++|-.||.|+|+.+. .
T Consensus 157 ~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~ 236 (928)
T PF04762_consen 157 VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSR 236 (928)
T ss_pred eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCce
Confidence 0 111111211 2234467889999999998763 2
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeC---CCcEEEEECCCCeEEEEe--c--CcccceEEEEE
Q 002782 124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD---DATVRVWDLLAKKCVATL--D--KHFSRVTSMAI 196 (882)
Q Consensus 124 g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~---dg~I~vwd~~~~~~~~~l--~--~h~~~v~~l~~ 196 (882)
..++||+-+ |....+-..-.+--.+++|-|.|+ ++++... ...|.+|.- +|-....+ + .....|..+.|
T Consensus 237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~--lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN--LIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred eEEEEECCC-ceEEeccccCCCccCCccCCCCCC--EEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEE
Confidence 579999976 554444444444556789999876 3666543 356777763 33322222 2 34568999999
Q ss_pred ccCCCEEEEEeCCCeEEEEecCCce--eeeeec--CcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcC
Q 002782 197 TSDGSTLISAGRDKVVNLWDLRDYS--CKLTVP--TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 272 (882)
Q Consensus 197 s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (882)
++|+..|+....|. |.+|-...+. ..+.+. .......+.|.+.. +..+.....
T Consensus 313 n~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~----------------------p~~L~v~t~ 369 (928)
T PF04762_consen 313 NSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK----------------------PLRLHVLTS 369 (928)
T ss_pred CCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC----------------------CCEEEEEec
Confidence 99999999988666 9999888764 222222 22223335555442 234555555
Q ss_pred CCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeeccc
Q 002782 273 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352 (882)
Q Consensus 273 ~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 352 (882)
+|.+..++..-... ......|.+...+++-....+.+-.+.... ...+........
T Consensus 370 ~g~~~~~~~~~~v~---------------------~s~~~~~~D~g~vaVIDG~~lllTpf~~a~---VPPPMs~~~l~~ 425 (928)
T PF04762_consen 370 NGQYEIYDFAWDVS---------------------RSPGSSPNDNGTVAVIDGNKLLLTPFRRAV---VPPPMSSYELEL 425 (928)
T ss_pred CCcEEEEEEEEEEE---------------------ecCCCCccCceEEEEEeCCeEEEecccccC---CCchHhceEEcC
Confidence 55555444321100 000112334445555555555554433221 111222233344
Q ss_pred CCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceee--------eeee----------CCCcceEEeeeeeecCCCEEE
Q 002782 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--------YVLA----------GHSEIVLCLDTCALSSGKILI 414 (882)
Q Consensus 353 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--------~~~~----------~~~~~v~~~~~~~~~~~~~~l 414 (882)
...|.+++|.+.... +++-..+|.+.+|........ ..+. .....+..+. +..++.. +
T Consensus 426 ~~~v~~vaf~~~~~~-~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~ 501 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSR-FAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLA--WLNDDTL-L 501 (928)
T ss_pred CCCcEEEEEeCCCCe-EEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEE--EeCCCEE-E
Confidence 578999999885444 888888899999985432211 1111 1122344444 5555554 3
Q ss_pred EEeec---CCeEEEEeCCCc---eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchh
Q 002782 415 VTGSK---DNSVRLWDSESR---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488 (882)
Q Consensus 415 ~~~~~---dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 488 (882)
+.... ...+.+++.... ........-.+.+..+...+... .++.-..+|.+...+....... ..
T Consensus 502 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~G~v~~~~~~~~~~~---------~~ 571 (928)
T PF04762_consen 502 VLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSG-SLYIQTNDGKVFQLSSDGELSQ---------IV 571 (928)
T ss_pred EEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCc-EEEEEECCCEEEEeecCCCccc---------cc
Confidence 33333 357777776432 22233333345555555555543 4666677888886655433110 01
Q ss_pred hhhhcCCCeeEEEEcCCC-c-EEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782 489 VVAAHGKDINSLAVAPND-S-LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (882)
Q Consensus 489 ~~~~~~~~i~~~~~s~~~-~-~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~ 566 (882)
.+......+..+.+.... + .++.-+..|.+++ ++..+ ...++++.+. +.+|+.......+++.++.
T Consensus 572 ~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~l------a~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 572 KFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLL------ASNCTSFAVT--DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred cCCCCCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEE------ecCCceEEEE--cCEEEEEecCceEEEEECc
Confidence 111111122222222222 1 3333333343332 11221 2557777775 5566666667788888886
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=5e-09 Score=107.33 Aligned_cols=114 Identities=19% Similarity=0.149 Sum_probs=82.9
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCe
Q 002782 71 DDKLLFSSGHS-----REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA----------DRKVLVWDVDGGF 135 (882)
Q Consensus 71 d~~~las~~~d-----g~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~----------dg~v~vwd~~~~~ 135 (882)
++.++.+.... ++|.+.|..+++.+.++..-..+-. + +||||+.|+++.. +..|.|||..+.+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 44555544332 8999999999999999886555443 4 9999999887765 6889999999999
Q ss_pred EEEEeecCC-------CcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecC
Q 002782 136 CTHYFKGHK-------GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186 (882)
Q Consensus 136 ~~~~~~~h~-------~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~ 186 (882)
.+..+.-.. .....++++||++..+++--+.+..|.+.|+.+++.+..+.-
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 998876321 223477889987752222224478899999998888877653
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.37 E-value=3.1e-11 Score=115.50 Aligned_cols=254 Identities=22% Similarity=0.332 Sum_probs=177.4
Q ss_pred CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce-----EEeeeeccc------------ccEEEEEEccCCC-cEE
Q 002782 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----CVGVGTGHM------------GAVGAVAFSKKLQ-NFL 457 (882)
Q Consensus 396 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~v~~s~~~~-~~l 457 (882)
.+.+.++. +...|.+ |++|..+|.|.++.-.... ....++.|. ..|..+.|.++++ ..+
T Consensus 25 adiis~ve--f~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVE--FDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEE--eecccce-EeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 45677777 8889998 9999999999999644321 233344443 3577888877654 356
Q ss_pred EEeeCCCeEEEEecCCCCCCCC--------Cc---cc---------------ccchhhhhhcCCCeeEEEEcCCCcEEEE
Q 002782 458 VSGSSDHTIKVWSFDGLSDDAE--------QP---MN---------------LKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (882)
Q Consensus 458 ~s~~~dg~i~~wd~~~~~~~~~--------~~---~~---------------~~~~~~~~~~~~~i~~~~~s~~~~~la~ 511 (882)
+..+.|.+|++|.+........ .+ .. ........+|...|+++.++.|+..+.+
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 7778999999999865422110 00 00 0011223568888999999999998888
Q ss_pred EcCCCcEEEEeCCCc---eeEEEEeccc-----CceEEEEEcCC-CCEEEEeeCCCcEEEEecCCCcee----eEe----
Q 002782 512 GSQDRTACVWRLPDL---VSVVTFRGHK-----RGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCL----KTF---- 574 (882)
Q Consensus 512 ~s~dg~i~iwd~~~~---~~~~~~~~h~-----~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~----~~~---- 574 (882)
+. |=.|-+|+++-. -.+..+++++ .-|++..|+|. .+.++-.+..|+|++-|++...+- +.|
T Consensus 182 AD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 AD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred cc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 74 678999998633 2333444443 34889999995 467777888899999999843211 111
Q ss_pred --------ecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEc-CCCeeEEEeccCC------------Cce---EEEEEcC
Q 002782 575 --------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV-RTGECIATYDKHE------------DKI---WALAVGK 630 (882)
Q Consensus 575 --------~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~-~~~~~~~~~~~h~------------~~v---~~l~~s~ 630 (882)
.+--.+|..+.|+++|+|+++-+. -+|++||+ ...+++.+++.|. +.| ..++|+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 122356889999999999998554 58999999 4667777776653 222 4578999
Q ss_pred CCCEEEEEeCCCCEEEEECCCHHH
Q 002782 631 KTEMFATGGSDALVNLWHDSTAAE 654 (882)
Q Consensus 631 ~~~~l~s~~~dg~i~iw~~~~~~~ 654 (882)
++.+++||+....+++++...+..
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred CcceEecccccceEEEecCCCCcc
Confidence 999999999999999999666544
No 259
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.36 E-value=8.1e-09 Score=103.42 Aligned_cols=200 Identities=15% Similarity=0.156 Sum_probs=148.7
Q ss_pred cccccccccCCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecC---C---C-----ccEEEEE-EcC-CCCEEEEEe
Q 002782 13 EPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEG---G---S-----DTITALA-LSP-DDKLLFSSG 79 (882)
Q Consensus 13 ~~~~~~~y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~---~---~-----~~I~~l~-~sp-d~~~las~~ 79 (882)
+..+.-+|. =-.+.||+.++...++.|.+||+.+..+...--+ . . .+..-+. |++ +|.++|..+
T Consensus 263 HTnFtdYY~---R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS 339 (668)
T COG4946 263 HTNFTDYYP---RNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS 339 (668)
T ss_pred cCCchhccc---cccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe
Confidence 334445554 3457899999999999999999988764332111 1 0 0111111 333 688888887
Q ss_pred CCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCc
Q 002782 80 HSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR-KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK 158 (882)
Q Consensus 80 ~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg-~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~ 158 (882)
+ |...|.+...+-.+.. +|.+.|.-..+..++.-++.|..|| .+-|+|.++++. ..+.+.-+.|.++..+++|+.
T Consensus 340 R-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~ 415 (668)
T COG4946 340 R-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKK 415 (668)
T ss_pred c-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcE
Confidence 6 6777777655554442 4678899999998888899999998 899999999884 455667889999999999876
Q ss_pred cEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCC----eEEEEecCCce
Q 002782 159 SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK----VVNLWDLRDYS 221 (882)
Q Consensus 159 ~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg----~i~vwd~~~~~ 221 (882)
++.+.....+.+.|+.++.....=+...+-|+.+.|+|++++++-+--+| .|+++|+..++
T Consensus 416 --~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 416 --VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred --EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 88888889999999999987766667778999999999999999876555 46666665543
No 260
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.36 E-value=6.4e-11 Score=113.56 Aligned_cols=340 Identities=19% Similarity=0.236 Sum_probs=211.6
Q ss_pred eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcE
Q 002782 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV-DGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (882)
Q Consensus 93 ~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~-~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I 170 (882)
..++.++||...|.+...-|-..-+++.+.|.+++||-- ++++.-..+. .-..+++++.+.++... |+.|-..|++
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~--L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRR--LYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceE--EEEEEecceE
Confidence 456678899999999888888888999999999999954 3333222221 23567889999886554 9999999999
Q ss_pred EEEECC----CCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCccc
Q 002782 171 RVWDLL----AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDS 246 (882)
Q Consensus 171 ~vwd~~----~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (882)
.-+.+. ....++....|.+.+..+.|+....++++.+.|..+.---.+.+..+...
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y-------------------- 152 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY-------------------- 152 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce--------------------
Confidence 988664 34455666789999999999999999999999986543222211110000
Q ss_pred ccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCC
Q 002782 247 FLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ 326 (882)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (882)
.+.+ .......
T Consensus 153 -------------------~~~~------------------------------------------~~t~~~~-------- 163 (404)
T KOG1409|consen 153 -------------------NFET------------------------------------------PASALQF-------- 163 (404)
T ss_pred -------------------Eeec------------------------------------------cCCCCce--------
Confidence 0000 0000000
Q ss_pred eEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEe--CCCceeeeeeeCCCcceEEeee
Q 002782 327 QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD--LSSMSCSYVLAGHSEIVLCLDT 404 (882)
Q Consensus 327 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d--~~~~~~~~~~~~~~~~v~~~~~ 404 (882)
. .. +..+|...|.+.... ......+..+.+|.+.+.++.
T Consensus 164 ---------------d--------------~~---------~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~- 204 (404)
T KOG1409|consen 164 ---------------D--------------AL---------YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLK- 204 (404)
T ss_pred ---------------e--------------eE---------EEEecccccceEEEEEeecCCceEEEEcCcccceEEEE-
Confidence 0 00 111222223333322 233445668889999999998
Q ss_pred eeecCCCEEEEEeecCCeEEEEeCCCceE-EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcc-
Q 002782 405 CALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM- 482 (882)
Q Consensus 405 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~- 482 (882)
+.+.... +.+|..|..+.+||+..++- ...+.+|...|..+...+--. .+++++.||.|.+|+++........-.
T Consensus 205 -Wd~~~~~-LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r~etpewl~ 281 (404)
T KOG1409|consen 205 -WDPGQRL-LFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKRVETPEWLD 281 (404)
T ss_pred -EcCCCcE-EEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccceeecCccccc
Confidence 6676665 99999999999999986553 345778999998888776644 699999999999999876532211100
Q ss_pred -----------cccchhh-------hhhc----CCCeeEEEEcCCCcEEEEEcCCCcEEEEe--------CCCceeEEEE
Q 002782 483 -----------NLKAKAV-------VAAH----GKDINSLAVAPNDSLVCTGSQDRTACVWR--------LPDLVSVVTF 532 (882)
Q Consensus 483 -----------~~~~~~~-------~~~~----~~~i~~~~~s~~~~~la~~s~dg~i~iwd--------~~~~~~~~~~ 532 (882)
....... +..| -+...+..-+.+.....+-+..-.+++-| .+. .++..+
T Consensus 282 s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~LA~p 360 (404)
T KOG1409|consen 282 SDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPLAIP 360 (404)
T ss_pred cchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCC-Cccccc
Confidence 0000000 0001 01111111111211222222222334333 222 334444
Q ss_pred ecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (882)
Q Consensus 533 ~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~ 566 (882)
..-..+|+.+.+..+-.+|+|++.|..|+|||+.
T Consensus 361 hei~tgItamhlqetlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 361 HEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred cccccceeEEEhhhhccceeecCCceEEEEEech
Confidence 4445679999999888999999999999999985
No 261
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=1e-08 Score=108.56 Aligned_cols=225 Identities=15% Similarity=0.143 Sum_probs=134.6
Q ss_pred EEEeCCCCcEEEEEE-cCCcEEEEeCCC-ceeeee---ee----------CCCcceEEeeeeeecCCCEEEEEeecCCeE
Q 002782 359 LKFLGEEEQYLAVAT-NIEQVQVYDLSS-MSCSYV---LA----------GHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (882)
Q Consensus 359 ~~~~~~~~~~l~~~~-~~~~i~i~d~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 423 (882)
+++.+ ++++++++. .+|.+.++++.. +..... +. .......++. +.|+++.++++.-....|
T Consensus 92 i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~--~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 92 IAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV--FSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE--E-TTSSEEEEEETTTTEE
T ss_pred EEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEE--ECCCCCEEEEEecCCCEE
Confidence 34343 444444443 478888888875 333222 11 1123455666 889999867766667789
Q ss_pred EEEeCCCce--EEe--ee-ecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCee
Q 002782 424 RLWDSESRC--CVG--VG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (882)
Q Consensus 424 ~iwd~~~~~--~~~--~~-~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (882)
.+|++.... ... .+ ......-..++|+|+++.+.++.-.+++|.++++..................-........
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 999987654 221 22 2345567899999999877777788999999998832211100000000000011123678
Q ss_pred EEEEcCCCcEEEEEc-CCCcEEEEeCC--Cc--eeEEEEecccCceEEEEEcCCCCEEEEee-CCCcEEEEec--CCCce
Q 002782 499 SLAVAPNDSLVCTGS-QDRTACVWRLP--DL--VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSI--SDGSC 570 (882)
Q Consensus 499 ~~~~s~~~~~la~~s-~dg~i~iwd~~--~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~--~~~~~ 570 (882)
.++++|||++|.++. ..++|.+|++. ++ +.+..+.........++++|+|++|+++. .++.|.+|++ .+|.+
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 899999999888765 45679999983 23 44444444455589999999999999886 5678999976 45554
Q ss_pred eeEee-cCcCCEEEEEE
Q 002782 571 LKTFE-GHTSSVLRASF 586 (882)
Q Consensus 571 ~~~~~-~h~~~v~~~~~ 586 (882)
...-. .......|+.|
T Consensus 329 ~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 329 TPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEEESSSEEEEEE
T ss_pred EEecccccCCCCEEEeC
Confidence 33321 23345555655
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.34 E-value=2.3e-09 Score=115.94 Aligned_cols=307 Identities=14% Similarity=0.065 Sum_probs=183.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEE
Q 002782 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSIL 151 (882)
Q Consensus 72 ~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~ 151 (882)
+..+++++.+|.|.-+|..+|+.+.............+. ++..++.++.++.+..+|..+|+.+...... +.+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 668888989999999999999998876644332222222 4667888889999999999999988765532 2222211
Q ss_pred EecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceE-----EEEEccCCCEEEEEeCCCeEEEEecCCceeeeee
Q 002782 152 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVT-----SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (882)
Q Consensus 152 f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~-----~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 226 (882)
...+ + .++.++.+|.|..||..+|+.+.........+. +..+. +..++.+..+|.+..+|..+++.....
T Consensus 142 ~v~~-~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 142 LVAN-G--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred EEEC-C--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence 1112 3 377778899999999999998776654322111 11121 246778888899999999888766543
Q ss_pred cCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcc
Q 002782 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (882)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (882)
....... ........ .. ...-......+++++.+|.+..||..++........
T Consensus 217 ~~~~~~g-------~~~~~~~~-~~-----~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-------------- 269 (377)
T TIGR03300 217 RVALPKG-------RTELERLV-DV-----DGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-------------- 269 (377)
T ss_pred ccccCCC-------CCchhhhh-cc-----CCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc--------------
Confidence 3211000 00000000 00 000000123566677788888888776633211100
Q ss_pred eeEEEEccCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc
Q 002782 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (882)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 386 (882)
... ..... .+..+.+++.+|.+..+|..++
T Consensus 270 -------------------------------------------~~~----~~p~~---~~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 270 -------------------------------------------SSY----QGPAV---DDNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred -------------------------------------------CCc----cCceE---eCCEEEEECCCCeEEEEECCCC
Confidence 000 00000 3345666677788888888887
Q ss_pred eeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeE
Q 002782 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (882)
Q Consensus 387 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i 466 (882)
+..............- ....+.. +++++.+|.++++|..+++.+.....+...+..--...++ .|+.++.||.|
T Consensus 300 ~~~W~~~~~~~~~~ss---p~i~g~~-l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~--~l~v~~~dG~l 373 (377)
T TIGR03300 300 SELWKNDELKYRQLTA---PAVVGGY-LVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD--GLLVQTRDGDL 373 (377)
T ss_pred cEEEccccccCCcccc---CEEECCE-EEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC--EEEEEeCCceE
Confidence 7654442211111110 1123455 7888999999999999999998887666543332222333 47888999988
Q ss_pred EEE
Q 002782 467 KVW 469 (882)
Q Consensus 467 ~~w 469 (882)
..|
T Consensus 374 ~~~ 376 (377)
T TIGR03300 374 YAF 376 (377)
T ss_pred EEe
Confidence 765
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=3e-10 Score=123.13 Aligned_cols=197 Identities=19% Similarity=0.146 Sum_probs=127.5
Q ss_pred ceEEccCCCEEE--EEeC----CeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC
Q 002782 24 PLVVSSDGSFIA--CACG----ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-----SREIRVWDLSTL 92 (882)
Q Consensus 24 ~va~s~dg~~la--~~~~----~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~-----dg~i~iwd~~~~ 92 (882)
.-+|||||+.++ +.+. ..|.+.++.+|+...... ........+|||||+.||..+. +..+.+|++.++
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g 267 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETG 267 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccC
Confidence 357999997532 2332 269999999887543322 3334567899999999887553 223445777653
Q ss_pred ---eeEEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-CeEEEEeecCCCcEEEEEEecCCCccEEEEEe
Q 002782 93 ---KCLRSWKGHDGPAIGMACHPSGGLLATAG-ADRKVLVW--DVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (882)
Q Consensus 93 ---~~~~~~~~h~~~V~~l~fs~~~~~lasg~-~dg~v~vw--d~~~-~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs 165 (882)
...+...++.+.....+|+|||+.|+..+ .+|...+| ++.. +.....+..+...+....|+||++. ++++..
T Consensus 268 ~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~-Laf~~~ 346 (428)
T PRK01029 268 AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK-IAFCSV 346 (428)
T ss_pred CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE-EEEEEc
Confidence 33333333334456789999999888766 45654555 4432 3334455555567788999999875 233333
Q ss_pred CC--CcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeC---CCeEEEEecCCceee
Q 002782 166 DD--ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR---DKVVNLWDLRDYSCK 223 (882)
Q Consensus 166 ~d--g~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~ 223 (882)
.+ ..|.+||+.+++... +......+....|+|||+.|+.... ...|.+|++.+++..
T Consensus 347 ~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 347 IKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred CCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 32 469999999887654 3333345778999999998875543 357888898776543
No 264
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=4.5e-10 Score=123.78 Aligned_cols=234 Identities=17% Similarity=0.112 Sum_probs=151.8
Q ss_pred CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecC--CeEEEEeCCCceEEeeeecccccEEEEEEccCC
Q 002782 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (882)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~ 453 (882)
..|.++|..... ...+..+...+.... ++|+|+.++++...+ ..|++||+.++..... ..+.+.+.+++|+|++
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~--~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPA--WSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDG 245 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceeccc--CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCC
Confidence 357777875443 344555666677776 899999844443322 4799999998765433 3345566778999999
Q ss_pred CcEEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CC--cEEEEeCCCcee
Q 002782 454 QNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVS 528 (882)
Q Consensus 454 ~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg--~i~iwd~~~~~~ 528 (882)
+.++++.+.++ .|.+|++.+... ..+..+........|+|||+.|+..+. ++ .|+++|+.+++.
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~-----------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQL-----------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCE-----------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 86666666655 477777765421 111223333456789999998876654 33 588888877654
Q ss_pred EEEEecccCceEEEEEcCCCCEEEEeeCCC---cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCC---eE
Q 002782 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LV 602 (882)
Q Consensus 529 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg---~i 602 (882)
..+..+...+....|+|+|++++.++.++ .|.+||+.++... .+..+ .......|+|||++|+..+.++ .+
T Consensus 315 -~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 315 -RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred -EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 34444556677889999999999888776 7999998876443 23222 2234568999999988877754 45
Q ss_pred EEEEcCCCeeEEEeccCCCceEEEEE
Q 002782 603 KLWTVRTGECIATYDKHEDKIWALAV 628 (882)
Q Consensus 603 ~iwd~~~~~~~~~~~~h~~~v~~l~~ 628 (882)
.+.+. +|.....+..+.+.+..++|
T Consensus 392 ~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 392 GLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEEC-CCceeeECCCCCCCcCCCCC
Confidence 55553 45555555544445544444
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=6.6e-10 Score=121.54 Aligned_cols=235 Identities=14% Similarity=0.085 Sum_probs=147.8
Q ss_pred cEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCC--eEEEEeCCCceEEeeeecccccEEEEEEccCCC
Q 002782 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (882)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~ 454 (882)
.+.++|...... +.+..+...+.+.. ++|+|+.++++...++ .|.+||+.+++.... ....+.....+|+|+|+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~--wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPA--WSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCce--ECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCC
Confidence 566667655433 34444555666666 8999998555544443 588889988765332 22223345689999999
Q ss_pred cEEEEeeCCCe--EEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CC--cEEEEeCCCceeE
Q 002782 455 NFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSV 529 (882)
Q Consensus 455 ~~l~s~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg--~i~iwd~~~~~~~ 529 (882)
.++++.+.++. |.++|+.+.. ...+..+.......+|+|||+.++..+. ++ .|+++|+.+++..
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 77677777776 5566665431 1111223345567899999998876553 33 4777788777543
Q ss_pred EEEecccCceEEEEEcCCCCEEEEeeCC-C--cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecC-C--eEE
Q 002782 530 VTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-G--LVK 603 (882)
Q Consensus 530 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g--~i~ 603 (882)
. +..........+|+|||++|+..+.+ + .|.++|+.++... .+... .......|+|||++|+..+.+ | .+.
T Consensus 344 ~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 344 R-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred E-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 3 22122223457899999988876553 3 4566788777543 22222 112245799999988776654 3 477
Q ss_pred EEEcCCCeeEEEeccCCCceEEEEEcC
Q 002782 604 LWTVRTGECIATYDKHEDKIWALAVGK 630 (882)
Q Consensus 604 iwd~~~~~~~~~~~~h~~~v~~l~~s~ 630 (882)
+++. +|.....+..+.+.+...+|+|
T Consensus 421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEC-CCCceEECcCCCCCcCCCccCC
Confidence 7786 6777777776667777788887
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=8.1e-10 Score=121.67 Aligned_cols=235 Identities=13% Similarity=0.046 Sum_probs=150.2
Q ss_pred cEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecC--CeEEEEeCCCceEEeeeecccccEEEEEEccCCC
Q 002782 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (882)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~ 454 (882)
.|.++|...+.. ..+..+...+.... ++|+|+.++++...+ ..|.+||+.++..... ....+.+....|+|+|+
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~--wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPR--WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeee--ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCC
Confidence 477777765543 34555666777777 899999844544333 4688999988865433 22334455789999998
Q ss_pred cEEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CC--cEEEEeCCCceeE
Q 002782 455 NFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSV 529 (882)
Q Consensus 455 ~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg--~i~iwd~~~~~~~ 529 (882)
.++++.+.+| .|.+||+.+... ..+..+........|+|||+.++..+. ++ .|+++++.+++..
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~-----------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQL-----------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCe-----------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 6666666666 577778765421 111223334567889999998776653 33 5778888777643
Q ss_pred EEEecccCceEEEEEcCCCCEEEEeeCC-C--cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecC---CeEE
Q 002782 530 VTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVK 603 (882)
Q Consensus 530 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~ 603 (882)
.. ...........|+|||+.|+..+.+ + .|.+||+.++.... +. +........|+|||++++..+.+ ..|.
T Consensus 325 ~l-t~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 325 RV-TFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred Ee-ecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 32 2222334467899999999877643 2 58889998876432 22 11222346899999998777654 3577
Q ss_pred EEEcCCCeeEEEeccCCCceEEEEEcC
Q 002782 604 LWTVRTGECIATYDKHEDKIWALAVGK 630 (882)
Q Consensus 604 iwd~~~~~~~~~~~~h~~~v~~l~~s~ 630 (882)
++++. |.....+..+.+.+...+|+|
T Consensus 402 ~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 402 LVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEECC-CCceEECcCCCCCcCCCccCC
Confidence 77774 444445555566677777776
No 267
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.29 E-value=4.4e-08 Score=103.72 Aligned_cols=291 Identities=14% Similarity=0.150 Sum_probs=174.5
Q ss_pred CeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEc----CCcEEEEeCCCc--ee--eeeeeCCCc
Q 002782 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN----IEQVQVYDLSSM--SC--SYVLAGHSE 397 (882)
Q Consensus 326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~--~~--~~~~~~~~~ 397 (882)
+.|..|.+..... .+..... ........-+++.+ ++++|.+... .+.|..|.+... .. +........
T Consensus 13 ~gI~~~~~d~~~g---~l~~~~~-~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 13 GGIYVFRFDEETG---TLTLVQT-VAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp TEEEEEEEETTTT---EEEEEEE-EEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred CcEEEEEEcCCCC---CceEeee-ecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 5666666643322 2222222 11223344566666 5566666655 578888887653 33 222222222
Q ss_pred ceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC-ceEEee---ee----------cccccEEEEEEccCCCcEEEEeeCC
Q 002782 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGV---GT----------GHMGAVGAVAFSKKLQNFLVSGSSD 463 (882)
Q Consensus 398 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~v~~s~~~~~~l~s~~~d 463 (882)
....+. ..++++.++++...+|.+.++++.. +..... .. .......++.++|+++.++++.-..
T Consensus 88 ~p~~i~--~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 88 SPCHIA--VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp CEEEEE--ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CcEEEE--EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 333344 7899999666667899999999986 433322 11 1234578899999998666666566
Q ss_pred CeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE-cCCCcEEEEeCC--Cce--eEEEEecc---
Q 002782 464 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLP--DLV--SVVTFRGH--- 535 (882)
Q Consensus 464 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-s~dg~i~iwd~~--~~~--~~~~~~~h--- 535 (882)
..|.+|++......... ..............++|+|+++++.+. -.+++|.++++. ++. .+..+...
T Consensus 166 D~v~~~~~~~~~~~l~~-----~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTP-----VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp TEEEEEEE-TTS-TEEE-----EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred CEEEEEEEeCCCceEEE-----eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 78999998764311100 111122345667899999999887655 457789999988 432 33333321
Q ss_pred ---cCceEEEEEcCCCCEEEEee-CCCcEEEEecC--CCc--eeeEeecCcCCEEEEEEEeCCCEEEEeec-CCeEEEEE
Q 002782 536 ---KRGIWSVEFSPVDQVVITAS-GDKTIKIWSIS--DGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWT 606 (882)
Q Consensus 536 ---~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~~--~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~iwd 606 (882)
......|+++|||++|+++. .+.+|.+|+++ ++. .+..+.........+.++|+|++|+++.. ++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 12578999999999888765 56789999994 333 33444434455889999999999988875 56899987
Q ss_pred c--CCCeeEEEec-cCCCceEEEEE
Q 002782 607 V--RTGECIATYD-KHEDKIWALAV 628 (882)
Q Consensus 607 ~--~~~~~~~~~~-~h~~~v~~l~~ 628 (882)
+ ++|.+...-. ..-....|+.|
T Consensus 321 ~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 321 IDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EeCCCCcEEEecccccCCCCEEEeC
Confidence 6 4676544432 12344455554
No 268
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=5.8e-09 Score=112.85 Aligned_cols=264 Identities=13% Similarity=0.041 Sum_probs=154.2
Q ss_pred cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEE-
Q 002782 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG- 445 (882)
Q Consensus 367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~- 445 (882)
..+++++.++.+..+|..+++......... .+.+.. .. .+.. ++.++.+|.+..||..+++.+.........+.
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p--~v-~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP--LV-ANGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC--EE-ECCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 344455555666666666665544333221 121111 11 2344 66677789999999998887766543322111
Q ss_pred ----EEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCe-eEEEEcCCCcEEEEEcCCCcEEE
Q 002782 446 ----AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI-NSLAVAPNDSLVCTGSQDRTACV 520 (882)
Q Consensus 446 ----~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~la~~s~dg~i~i 520 (882)
+..+. + . .++.+..++.+..+|..++...-..................+ .+..+ .+..+.+++.+|.+..
T Consensus 181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAA 255 (377)
T ss_pred cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEE
Confidence 11111 2 2 567778888998888876532110000000000000000000 01111 2457777888999999
Q ss_pred EeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCC-EEEEEEEeCCCEEEEeecC
Q 002782 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGAQIVSCGAD 599 (882)
Q Consensus 521 wd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~s~~~d 599 (882)
||..+++.+-..... ...... .++..+++++.||.+..+|..+|+.+......... ..... ..+..|++++.+
T Consensus 256 ~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~--i~g~~l~~~~~~ 329 (377)
T TIGR03300 256 LDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA--VVGGYLVVGDFE 329 (377)
T ss_pred EECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE--EECCEEEEEeCC
Confidence 999999877655421 111222 24678888889999999999999887665322111 11111 246789999999
Q ss_pred CeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEE
Q 002782 600 GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647 (882)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 647 (882)
|.|.++|..+|+.+..+..+...+++--...++ .|+.++.||.|..|
T Consensus 330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 999999999999999988666554443223344 48888999988765
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.4e-09 Score=119.02 Aligned_cols=183 Identities=20% Similarity=0.226 Sum_probs=118.2
Q ss_pred cCCceEEccCCCEEEEEeCC----eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCe
Q 002782 21 GGGPLVVSSDGSFIACACGE----SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-S--REIRVWDLSTLK 93 (882)
Q Consensus 21 ~g~~va~s~dg~~la~~~~~----~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~-d--g~i~iwd~~~~~ 93 (882)
+|..-+|+....++....++ .|.++|...... +.+..+...+.+.+|||||+.|+..+. + ..|.+||+.+++
T Consensus 175 tG~~g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~ 253 (448)
T PRK04792 175 TGERGAFLTRIAYVVVNDKDKYPYQLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV 253 (448)
T ss_pred cCCCccccCEEEEEEeeCCCCCceEEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC
Confidence 44445555444444443332 577888765544 445556778899999999999987643 3 368999998886
Q ss_pred eEEEeecCCCCEEEEEEcCCCCEEEEE-eCCCc--EEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCC--
Q 002782 94 CLRSWKGHDGPAIGMACHPSGGLLATA-GADRK--VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA-- 168 (882)
Q Consensus 94 ~~~~~~~h~~~V~~l~fs~~~~~lasg-~~dg~--v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg-- 168 (882)
... +....+.....+|+|||+.|+.. +.++. |.+||+.++.. ..+..+.......+|+||++. ++++...+|
T Consensus 254 ~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~ 330 (448)
T PRK04792 254 REK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKS-LIFTSERGGKP 330 (448)
T ss_pred eEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCE-EEEEECCCCCc
Confidence 533 22223344578999999988764 45554 88889988764 344556666778899999775 334444444
Q ss_pred cEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeC
Q 002782 169 TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (882)
Q Consensus 169 ~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~ 208 (882)
.|.++|+.+++... +..+.......+|+|||++|+..+.
T Consensus 331 ~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 331 QIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred eEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEe
Confidence 46666777776433 2222222345689999998877654
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=1.3e-08 Score=104.21 Aligned_cols=248 Identities=13% Similarity=0.089 Sum_probs=161.4
Q ss_pred cccccccccCCceEEccCCCEEEEEeC-----------CeEEEEEcCCCceeeeecCCCc-------cEEEEEEcCCCCE
Q 002782 13 EPVLQQFYGGGPLVVSSDGSFIACACG-----------ESINIVDLSNASIKSTIEGGSD-------TITALALSPDDKL 74 (882)
Q Consensus 13 ~~~~~~~y~g~~va~s~dg~~la~~~~-----------~~I~i~d~~~~~~~~~l~~~~~-------~I~~l~~spd~~~ 74 (882)
...++.-+.++-+ +||||+.|++++. +.|.+||+.+++.+..+..... .-..+++||||++
T Consensus 40 ~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~ 118 (352)
T TIGR02658 40 LGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKT 118 (352)
T ss_pred EEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCE
Confidence 3444444444444 9999999998887 4899999999999988874322 2348999999999
Q ss_pred EEEEe-C-CCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeE-EEEee-cCC--CcE
Q 002782 75 LFSSG-H-SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD-GGFC-THYFK-GHK--GVV 147 (882)
Q Consensus 75 las~~-~-dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~-~~~~-~~~~~-~h~--~~V 147 (882)
|++.. . +..|.+.|+.+++.+..+.... +..-...++++.++. +.||......++ +|+. ..... .+. .++
T Consensus 119 l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v 195 (352)
T TIGR02658 119 LLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYL 195 (352)
T ss_pred EEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEE--eecCceEEEEecCCCceEEeeeeeecCCcccc
Confidence 99875 3 7899999999999999887532 333333333332211 234433333222 1221 11111 011 000
Q ss_pred -EEEEEec-CCCccEEEEEeCCCcEEEEECCCC-----eEEEEecC-------cccceEEEEEccCCCEEEEEe------
Q 002782 148 -SSILFHP-DTDKSLLFSGSDDATVRVWDLLAK-----KCVATLDK-------HFSRVTSMAITSDGSTLISAG------ 207 (882)
Q Consensus 148 -~~l~f~~-~~~~~~l~sgs~dg~I~vwd~~~~-----~~~~~l~~-------h~~~v~~l~~s~~~~~l~s~~------ 207 (882)
..-.|.+ ++. +++.... |.|.+.|+... ..+..+.. ..+.+..+++++++++++...
T Consensus 196 ~~rP~~~~~dg~--~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~ 272 (352)
T TIGR02658 196 INHPAYSNKSGR--LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW 272 (352)
T ss_pred ccCCceEcCCCc--EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence 0014556 543 2444444 99999996443 33333211 234455699999999988843
Q ss_pred ----CCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCC
Q 002782 208 ----RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (882)
Q Consensus 208 ----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~ 283 (882)
..+.|.++|..+.+.+..++.......+.+.+++.. ..+++.+.++.|.++|..+
T Consensus 273 thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp---------------------~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 273 THKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKP---------------------LLYALSTGDKTLYIFDAET 331 (352)
T ss_pred cccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCe---------------------EEEEeCCCCCcEEEEECcC
Confidence 225899999999999999999999999999999851 2345566789999999988
Q ss_pred ceeee
Q 002782 284 ACLYE 288 (882)
Q Consensus 284 ~~~~~ 288 (882)
+....
T Consensus 332 ~k~i~ 336 (352)
T TIGR02658 332 GKELS 336 (352)
T ss_pred CeEEe
Confidence 85443
No 271
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.27 E-value=1.8e-09 Score=118.96 Aligned_cols=175 Identities=23% Similarity=0.237 Sum_probs=126.8
Q ss_pred eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEE
Q 002782 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS---REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL 117 (882)
Q Consensus 41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~l 117 (882)
.|.++|...+.. +.+..+...+.+.+|||||++||.+... ..|++||+.+++... +..+.+.+.+++|+|||+.|
T Consensus 171 ~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 588999864443 4455566778999999999999987643 479999999886543 33455677789999999987
Q ss_pred EEE-eCC--CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEe-CCC--cEEEEECCCCeEEEEecCcccce
Q 002782 118 ATA-GAD--RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS-DDA--TVRVWDLLAKKCVATLDKHFSRV 191 (882)
Q Consensus 118 asg-~~d--g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs-~dg--~I~vwd~~~~~~~~~l~~h~~~v 191 (882)
+.. +.+ ..|.+||+.++... .+..+........|+||++. |+..+ .++ .|.+||+.+++.. .+..+...+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 754 433 45999999887643 44445555667789998765 44443 333 5888888776643 444455667
Q ss_pred EEEEEccCCCEEEEEeCCC---eEEEEecCCce
Q 002782 192 TSMAITSDGSTLISAGRDK---VVNLWDLRDYS 221 (882)
Q Consensus 192 ~~l~~s~~~~~l~s~~~dg---~i~vwd~~~~~ 221 (882)
....|+|+|++++.++.++ .|.+||+.+..
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 7889999999999988776 78899987743
No 272
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.4e-09 Score=117.88 Aligned_cols=220 Identities=11% Similarity=0.028 Sum_probs=136.5
Q ss_pred CeEEEEeCCCceEEeeeecccccEEEEEEccCCCc--EEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCC
Q 002782 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN--FLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496 (882)
Q Consensus 421 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~--~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (882)
..|.+.|...+.... +.........-.|+|+|+. ++++...+| .|.+.++.++.. ..+......
T Consensus 165 ~~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-----------~~lt~~~g~ 232 (428)
T PRK01029 165 GELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-----------KKILALQGN 232 (428)
T ss_pred ceEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-----------eEeecCCCC
Confidence 367777776654433 3334556677899999875 333444444 466666654421 111112334
Q ss_pred eeEEEEcCCCcEEEEEcC-CC----cEEEEeCCCc---eeEEEEecccCceEEEEEcCCCCEEEEee-CCCcEEEE--ec
Q 002782 497 INSLAVAPNDSLVCTGSQ-DR----TACVWRLPDL---VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIW--SI 565 (882)
Q Consensus 497 i~~~~~s~~~~~la~~s~-dg----~i~iwd~~~~---~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iw--d~ 565 (882)
....+|||||+.|+..+. +| .+.+|++..+ .......++.......+|+|||+.|+..+ .+|...+| ++
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 456899999988886543 22 3444676652 33333333333456789999999877665 45655555 44
Q ss_pred CC-CceeeEeecCcCCEEEEEEEeCCCEEEEeecC---CeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeC-
Q 002782 566 SD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS- 640 (882)
Q Consensus 566 ~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~- 640 (882)
.. +.....+..+...+....|+|||++|+..+.+ ..|.+||+.+++...... ....+....|+|||++|+....
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC
Confidence 32 33344454455566778999999999876653 379999999887654333 3345677899999998875433
Q ss_pred --CCCEEEEECCCHH
Q 002782 641 --DALVNLWHDSTAA 653 (882)
Q Consensus 641 --dg~i~iw~~~~~~ 653 (882)
...|.+|++.+++
T Consensus 392 ~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 392 SNESELYLISLITKK 406 (428)
T ss_pred CCCceEEEEECCCCC
Confidence 3457788876653
No 273
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.3e-09 Score=120.11 Aligned_cols=190 Identities=22% Similarity=0.164 Sum_probs=128.0
Q ss_pred ceEEccCCCEEEEEeCC----eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEE-EeCCC--cEEEEECCCCeeEE
Q 002782 24 PLVVSSDGSFIACACGE----SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGHSR--EIRVWDLSTLKCLR 96 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~----~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las-~~~dg--~i~iwd~~~~~~~~ 96 (882)
..+|||||+.|++...+ .|.+||+.+++... +....+.+.+.+|||||+.|+. ...+| .|.+||+.+++..
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~- 280 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS- 280 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence 56899999999887632 69999999887644 3333345567999999998874 44444 6888899887654
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCC--cEE
Q 002782 97 SWKGHDGPAIGMACHPSGGLLATAGA-D--RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA--TVR 171 (882)
Q Consensus 97 ~~~~h~~~V~~l~fs~~~~~lasg~~-d--g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg--~I~ 171 (882)
.+..+........|+|||+.|+..+. + ..|.++|+.++.... +...........|+|+++. ++++...++ .|.
T Consensus 281 ~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~-i~~~~~~~~~~~l~ 358 (430)
T PRK00178 281 RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKT-LVMVHRQDGNFHVA 358 (430)
T ss_pred EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCE-EEEEEccCCceEEE
Confidence 45556666777899999998887663 2 368888888876433 2222233445789999875 333333333 588
Q ss_pred EEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC---CeEEEEecCC
Q 002782 172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD---KVVNLWDLRD 219 (882)
Q Consensus 172 vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~vwd~~~ 219 (882)
+||+.+++... +.. ........|+|+|+.++..+.+ ..+.++++..
T Consensus 359 ~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 359 AQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 89998876533 321 2223356899999998877643 3466666643
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=1.7e-10 Score=132.58 Aligned_cols=197 Identities=18% Similarity=0.281 Sum_probs=153.5
Q ss_pred CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeee-cccccEEEEEEccCCCcEEEEeeCCCeEEEEecC
Q 002782 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (882)
Q Consensus 394 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~ 472 (882)
-+-..+.++. ..|.... .++|+.||.+++|....+..+..+. +....|+.+.|+.+|+ -+..+..||.+.+|...
T Consensus 2206 ~~v~~v~r~~--sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2206 HPVENVRRMT--SHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred cccCceeeec--CCCCCce-EEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-ceeeeccCCceeecccC
Confidence 3445566776 5566665 8999999999999998887766554 3348899999999987 57788899999999986
Q ss_pred CCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEc---CCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCC
Q 002782 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS---QDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD 548 (882)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s---~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~ 548 (882)
.. +....+.|......+.|-. ..+++++ .++.+.+||..-. ..-..-..|..+++++++.|..
T Consensus 2282 pk-----------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2282 PK-----------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred Cc-----------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc
Confidence 32 4445567888888888865 5666654 5678999996322 1112226799999999999999
Q ss_pred CEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec
Q 002782 549 QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617 (882)
Q Consensus 549 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 617 (882)
++|++|+.+|.|++||++..+.+++++. +. ...++++|+..|.++||++.....+.++.
T Consensus 2349 qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999999999988877777753 33 56799999999999999999887777665
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=4.5e-09 Score=99.01 Aligned_cols=273 Identities=19% Similarity=0.231 Sum_probs=175.2
Q ss_pred eCCeEEEEEecccccccceeeeeeeecccCCceEEEEEe--CCCCc-EEEEEEcCCcEEEEeCCCceeeeeeeCCCc---
Q 002782 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL--GEEEQ-YLAVATNIEQVQVYDLSSMSCSYVLAGHSE--- 397 (882)
Q Consensus 324 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--- 397 (882)
..|.+.+|++......... .........+.++.|. +.++. .++.+...|.|.++..........+.+-..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~----~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki 119 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLD----TLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI 119 (339)
T ss_pred eccceEEEeecccccCccc----eeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh
Confidence 3456666766554322100 0111122334445542 23344 566777789999998765444444433211
Q ss_pred ceE-EeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEe--eeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCC
Q 002782 398 IVL-CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (882)
Q Consensus 398 ~v~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~ 474 (882)
.+. ++..-+.+.+.. ++++..+|.+.+-+........ ..+.|.-..+...|+...++++.+|+.|+.+..||++..
T Consensus 120 ~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 120 SVVEALSLDISTSGTK-IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred hheeeeEEEeeccCce-EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 122 333337787877 8888889999866655554443 688999999999999888889999999999999999832
Q ss_pred CCCCCCcccccchhhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcCCCC--E
Q 002782 475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQ--V 550 (882)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~--~ 550 (882)
.. ........|...|.++.-+| .+.++++|+.|-.|++||.++. +++..-. -.++||.+..+|... +
T Consensus 199 ~~--------~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~l 269 (339)
T KOG0280|consen 199 KT--------FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRL 269 (339)
T ss_pred cc--------eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHH
Confidence 11 01222456888899998887 5789999999999999999854 4443322 458899999999543 4
Q ss_pred EEEeeCCCcEEEEecCCC--c---eeeEeecCcCCEEEEEEEeCCCEEEEeec-CCeEE-EEEcCCCe
Q 002782 551 VITASGDKTIKIWSISDG--S---CLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVK-LWTVRTGE 611 (882)
Q Consensus 551 l~s~~~d~~i~iwd~~~~--~---~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~-iwd~~~~~ 611 (882)
|+++-.+ -.+|-+...+ + .+.....|.+-+..-.|......|+|++. |..++ +|-.-+++
T Consensus 270 L~~CMh~-G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 270 LAACMHN-GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred HHHHHhc-CceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 4444443 3677776554 2 34555667776766677544557888653 66544 66544443
No 276
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=2.4e-07 Score=90.95 Aligned_cols=268 Identities=10% Similarity=0.112 Sum_probs=171.2
Q ss_pred CCcEEEEeCCCceeee---eeeCCCcceEEeeeeeecCCCEEEEEeec--CCeEEEEeCCC--ceEEe--eeecccccEE
Q 002782 375 IEQVQVYDLSSMSCSY---VLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVRLWDSES--RCCVG--VGTGHMGAVG 445 (882)
Q Consensus 375 ~~~i~i~d~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~--~~~~~--~~~~~~~~v~ 445 (882)
+..|++|++.+..-.. .+-.+.+.++-+. +.++++.+.+.... +|.|-.|.+.. |+... .......+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~--~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLA--VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEE--ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 5789999887432211 2234555666676 88888873333333 56777766553 54332 2223334448
Q ss_pred EEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCC----------CeeEEEEcCCCcEEEEEcCC
Q 002782 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK----------DINSLAVAPNDSLVCTGSQD 515 (882)
Q Consensus 446 ~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~~~s~~~~~la~~s~d 515 (882)
.++++++++.++.+.-.-|.|.++.+....... .......|.. .+.+..+.|++++|++.+..
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-------~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG 165 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-------PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG 165 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccc-------cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence 899999988444444456899999986532111 1111111222 27788999999999887532
Q ss_pred -CcEEEEeCCCceeEEEEe---cccCceEEEEEcCCCCEEEEeeC-CCcEEEEecCCC----ceeeEeec------CcCC
Q 002782 516 -RTACVWRLPDLVSVVTFR---GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDG----SCLKTFEG------HTSS 580 (882)
Q Consensus 516 -g~i~iwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~----~~~~~~~~------h~~~ 580 (882)
-.|.+|++..+.....-. ....+...|.|+|++++.....+ +++|-+|..... ++++++.. -...
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 359999999775543221 24566889999999998887664 899999998873 22332211 2345
Q ss_pred EEEEEEEeCCCEEEEeec-CCeEEEEEcCC--Cee--EEEeccCCCceEEEEEcCCCCEEEEEeCC-CCEEEEECCC
Q 002782 581 VLRASFLTRGAQIVSCGA-DGLVKLWTVRT--GEC--IATYDKHEDKIWALAVGKKTEMFATGGSD-ALVNLWHDST 651 (882)
Q Consensus 581 v~~~~~s~~g~~l~s~~~-dg~i~iwd~~~--~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g~i~iw~~~~ 651 (882)
...+.+++||++|.++.. ...|-+|.+.. |+. +.....+...-....|+++|++|++++.+ ..|.+|.+..
T Consensus 246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 677889999999987755 23788887764 322 22233344445778999999999988875 4588887664
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.14 E-value=4e-08 Score=93.32 Aligned_cols=205 Identities=21% Similarity=0.261 Sum_probs=139.3
Q ss_pred ceEEccCCCEEEEEeCCeEEEEEcCCC--ceeeeecCC---CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 002782 24 PLVVSSDGSFIACACGESINIVDLSNA--SIKSTIEGG---SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~~I~i~d~~~~--~~~~~l~~~---~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~ 98 (882)
.++.++||++||+..+..|.|-..++. ..+.....+ .-.-.-++||||+.+||.+...|+|+++|+.. ..+..+
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 378899999999999999999877654 233333222 22457899999999999999999999999865 333344
Q ss_pred ec-------CCCCEEEEEEcCCC---C---EEEEEeCCCcEEEEECCC-----CeEEEEee---cCCCcEEEEEEecCCC
Q 002782 99 KG-------HDGPAIGMACHPSG---G---LLATAGADRKVLVWDVDG-----GFCTHYFK---GHKGVVSSILFHPDTD 157 (882)
Q Consensus 99 ~~-------h~~~V~~l~fs~~~---~---~lasg~~dg~v~vwd~~~-----~~~~~~~~---~h~~~V~~l~f~~~~~ 157 (882)
.. -...|..|.|-+.. + -|.+-..+|.++=+-+.. ....+.+. .+...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 32 23567778786532 1 344555677777766532 23344444 3577899999999743
Q ss_pred ccEEEEEeCCC----------cEEEEECCCCeEEEE--------------------e---------cCcccceEEEEEcc
Q 002782 158 KSLLFSGSDDA----------TVRVWDLLAKKCVAT--------------------L---------DKHFSRVTSMAITS 198 (882)
Q Consensus 158 ~~~l~sgs~dg----------~I~vwd~~~~~~~~~--------------------l---------~~h~~~v~~l~~s~ 198 (882)
.+++.|.... -+..|.+-++.+-.. + ....+.|..|..||
T Consensus 161 -LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 161 -LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred -EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 4444443322 367787644321100 0 11245788999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCceeeeeecCcc
Q 002782 199 DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (882)
Q Consensus 199 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 230 (882)
||+.|++...+|.|.+|++....+.......+
T Consensus 240 dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 99999999999999999999887766655443
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=4.6e-08 Score=117.09 Aligned_cols=253 Identities=13% Similarity=0.097 Sum_probs=163.4
Q ss_pred EEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeC--C------------CcceEEeeeeeecCCCEEEEEeecCCe
Q 002782 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--H------------SEIVLCLDTCALSSGKILIVTGSKDNS 422 (882)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~------------~~~v~~~~~~~~~~~~~~l~~~~~dg~ 422 (882)
..+++.+.++.++++-+.++.|+++|..... ...+.+ . -.....++ +.++++.+.++-..++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIa--vd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLA--YNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEE--EeCCCCEEEEEeCCCce
Confidence 3566666667777777888999999986543 322222 1 11234555 66777764555566788
Q ss_pred EEEEeCCCceEEeeee-cc---------------cccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCC--C--cc
Q 002782 423 VRLWDSESRCCVGVGT-GH---------------MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE--Q--PM 482 (882)
Q Consensus 423 i~iwd~~~~~~~~~~~-~~---------------~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~--~~ 482 (882)
|+.+|..++....... +. ...-..++++|++..++++.+.++.|++||......... . ..
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999988765432211 00 123457899996666778888899999999765421000 0 00
Q ss_pred cccchhhhhhcCCCeeEEEEcCCCc-EEEEEcCCCcEEEEeCCCceeEEEEec---------------------ccCceE
Q 002782 483 NLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSVVTFRG---------------------HKRGIW 540 (882)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~s~dg~i~iwd~~~~~~~~~~~~---------------------h~~~v~ 540 (882)
...........-.....++++|+++ ++++.+.++.|++||+.++.......+ .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0000000001123457899999998 555566778999999987643211100 011346
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEee-------------cCcCCEEEEEEEeCCCEEEEeecCCeEEEEEc
Q 002782 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (882)
Q Consensus 541 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 607 (882)
.++++++|.++++-+.++.|++||..++....... +.-.....++++++|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 89999999998998999999999998776543221 12235778999999998888888999999999
Q ss_pred CCCee
Q 002782 608 RTGEC 612 (882)
Q Consensus 608 ~~~~~ 612 (882)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88764
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=3.5e-08 Score=118.06 Aligned_cols=246 Identities=14% Similarity=0.167 Sum_probs=158.9
Q ss_pred eecCCCEEEEEeecCCeEEEEeCCCceEEeeee-c------------ccccEEEEEEccCCCcEEEEeeCCCeEEEEecC
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-G------------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~------------~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~ 472 (882)
..+.+..++++-+.++.|++||........... + +-.....+++.+++..++++-..++.|+.+|+.
T Consensus 575 vd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~ 654 (1057)
T PLN02919 575 IDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFV 654 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecC
Confidence 445555557777888899999986543322211 1 112357889998876455555667889999876
Q ss_pred CCCCCC-----CCccccc--chhhhhhcCCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCCCceeEEEEecc---------
Q 002782 473 GLSDDA-----EQPMNLK--AKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGH--------- 535 (882)
Q Consensus 473 ~~~~~~-----~~~~~~~--~~~~~~~~~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h--------- 535 (882)
+..... ....... ..... ..-.....++++| ++.++++.+.++.|++||..++... .+.+.
T Consensus 655 ~~~V~tlag~G~~g~~~~gg~~~~~-~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~ 732 (1057)
T PLN02919 655 NETVRTLAGNGTKGSDYQGGKKGTS-QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGS 732 (1057)
T ss_pred CCEEEEEeccCcccCCCCCChhhhH-hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCC
Confidence 431000 0000000 00000 0012346899999 5677777788899999998876442 22211
Q ss_pred ------cCceEEEEEcCCCCE-EEEeeCCCcEEEEecCCCceeeEe-------------ec--------CcCCEEEEEEE
Q 002782 536 ------KRGIWSVEFSPVDQV-VITASGDKTIKIWSISDGSCLKTF-------------EG--------HTSSVLRASFL 587 (882)
Q Consensus 536 ------~~~v~~l~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~-------------~~--------h~~~v~~~~~s 587 (882)
-...+.++|+|++.. +++-+.++.|++||+.++...... -. .-.....++++
T Consensus 733 ~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 733 SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 124567999999984 455566799999999876532111 00 01134678999
Q ss_pred eCCCEEEEeecCCeEEEEEcCCCeeEEEec-------------cCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782 588 TRGAQIVSCGADGLVKLWTVRTGECIATYD-------------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 588 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~ 653 (882)
++|..+++-..++.|++||..++....... +.-.....++++++|+.+++.+.++.|++|+..++.
T Consensus 813 ~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 813 KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 999988888889999999998877653321 112356789999999999999999999999998754
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.12 E-value=2.5e-10 Score=131.26 Aligned_cols=186 Identities=18% Similarity=0.366 Sum_probs=151.8
Q ss_pred ccCCCEEEEEeCC-eEEEEEcCCCceeeeecC-CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCE
Q 002782 28 SSDGSFIACACGE-SINIVDLSNASIKSTIEG-GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPA 105 (882)
Q Consensus 28 s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~-~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V 105 (882)
+|.-.+.++|+++ .|++|....+..+..++. ....|+.+.|+..|+....+..||.+.+|... .++...++.|+...
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~ 2295 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKAL 2295 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccc
Confidence 3555566666655 899999988888776652 34789999999999999999999999999986 67788889999999
Q ss_pred EEEEEcCCCCEEEEEe---CCCcEEEEECCC---CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe
Q 002782 106 IGMACHPSGGLLATAG---ADRKVLVWDVDG---GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (882)
Q Consensus 106 ~~l~fs~~~~~lasg~---~dg~v~vwd~~~---~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~ 179 (882)
..+.|-. ..+++++ .++.+.+||.-- ..+++ ..|.+.++++++.|. ..+|++|+.+|.|++||+...+
T Consensus 2296 ~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~--~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2296 SDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPK--HQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred cceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCc--ceEEEecCCcCcEEEeehHHHH
Confidence 9999886 5677765 568999999732 23444 789999999999995 4569999999999999999888
Q ss_pred EEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcc
Q 002782 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (882)
Q Consensus 180 ~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 230 (882)
.+++++. +. ...++++++..|.++||++.....+.+++...
T Consensus 2370 l~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2370 LRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred HHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 7766654 33 56689999999999999999888777776544
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=2.2e-10 Score=116.21 Aligned_cols=171 Identities=17% Similarity=0.289 Sum_probs=133.6
Q ss_pred eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC-------CCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q 002782 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS-------TLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRK 125 (882)
Q Consensus 53 ~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~-------~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~ 125 (882)
+..+.||.+.|.+++--.+.+-+++++.|.+|++|.+. +..+..++..|+.+|..+.|-.+.++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45678999999999887788889999999999999985 334777788999999999999999988875 788
Q ss_pred EEEEECCCCeEEEEee--cCCCcEEEEEEecCC-CccEEEEEeCCCcEEEEECCCCeEEEEe-----cCcccceEEEEEc
Q 002782 126 VLVWDVDGGFCTHYFK--GHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLAKKCVATL-----DKHFSRVTSMAIT 197 (882)
Q Consensus 126 v~vwd~~~~~~~~~~~--~h~~~V~~l~f~~~~-~~~~l~sgs~dg~I~vwd~~~~~~~~~l-----~~h~~~v~~l~~s 197 (882)
|.+||.--|+.+.... ...+.+..+...|+- ...+++.++...+|+++|.+.+.....+ .+..+-+.++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999998877665332 123334444445553 3333444488999999999988766555 3445678999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCceeeee
Q 002782 198 SDGSTLISAGRDKVVNLWDLRDYSCKLT 225 (882)
Q Consensus 198 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 225 (882)
+.|+.++.+-.+|.|.+.|.+++..+..
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINs 913 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINS 913 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceecc
Confidence 9999999999999999999998876543
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=5.9e-07 Score=88.27 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=122.5
Q ss_pred CCeEEEEEcCCC--cee-eeecCCCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCC--CeeEE--EeecCCCCEEEE
Q 002782 39 GESINIVDLSNA--SIK-STIEGGSDTITALALSPDDKLLFSSGH---SREIRVWDLST--LKCLR--SWKGHDGPAIGM 108 (882)
Q Consensus 39 ~~~I~i~d~~~~--~~~-~~l~~~~~~I~~l~~spd~~~las~~~---dg~i~iwd~~~--~~~~~--~~~~h~~~V~~l 108 (882)
+..|.+|++.+. +.- ..+-.+.+..+-|+|+|++++|.++-. .|.|.-|.+.. |++.. .......+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 447999988733 211 122235667899999999999988754 57787777764 54332 222223444889
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEECCC-CeEEEE--eecCCCc----------EEEEEEecCCCccEEEEEe-CCCcEEEE
Q 002782 109 ACHPSGGLLATAGA-DRKVLVWDVDG-GFCTHY--FKGHKGV----------VSSILFHPDTDKSLLFSGS-DDATVRVW 173 (882)
Q Consensus 109 ~fs~~~~~lasg~~-dg~v~vwd~~~-~~~~~~--~~~h~~~----------V~~l~f~~~~~~~~l~sgs-~dg~I~vw 173 (882)
+++++|++|+++.. .|.|.|+-+.. |..... ...|.+. +....|.|+++. |++.. .--.|.+|
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~--l~v~DLG~Dri~~y 172 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY--LVVPDLGTDRIFLY 172 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE--EEEeecCCceEEEE
Confidence 99999999999874 48999999854 433222 1234444 888899998765 44443 23359999
Q ss_pred ECCCCeEEEEec---CcccceEEEEEccCCCEEEEEe-CCCeEEEEecCCc
Q 002782 174 DLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAG-RDKVVNLWDLRDY 220 (882)
Q Consensus 174 d~~~~~~~~~l~---~h~~~v~~l~~s~~~~~l~s~~-~dg~i~vwd~~~~ 220 (882)
++..|+....-. ........|.|+|++++.++.+ -+++|.+|.....
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 999776432211 2345678899999999988776 5899999998764
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.03 E-value=2.4e-09 Score=105.56 Aligned_cols=157 Identities=25% Similarity=0.365 Sum_probs=115.2
Q ss_pred ceEEccCCCEEEEEeCC-eEEEEEcCCCc----eeeeecCCCccEEEEEEcCCCCEEEE---EeCCCcEEEEECCCCeeE
Q 002782 24 PLVVSSDGSFIACACGE-SINIVDLSNAS----IKSTIEGGSDTITALALSPDDKLLFS---SGHSREIRVWDLSTLKCL 95 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~-~I~i~d~~~~~----~~~~l~~~~~~I~~l~~spd~~~las---~~~dg~i~iwd~~~~~~~ 95 (882)
.+..+++|+++|++..+ ...+++..... .+....... .-+++.|..+.....+ ++....+.+|....+. .
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~ 144 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-C 144 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccC-c
Confidence 67788999999999887 55566654332 222222222 2244444444444444 4555667777776644 3
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEE
Q 002782 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (882)
Q Consensus 96 ~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd 174 (882)
..+-||-..++.++|+||+++++++..|..|+|-....-..+..+- ||..-|..++..++. .|++||.|++|++||
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~---~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY---LLLSGSGDKTLRLWD 221 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc---eeeecCCCCcEEEEe
Confidence 4456799999999999999999999999999998887766665554 799999999998752 389999999999999
Q ss_pred CCCCeEEEEec
Q 002782 175 LLAKKCVATLD 185 (882)
Q Consensus 175 ~~~~~~~~~l~ 185 (882)
+.+|+++.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999886653
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=6.5e-09 Score=109.58 Aligned_cols=203 Identities=20% Similarity=0.293 Sum_probs=149.0
Q ss_pred cccccccCCceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCC--CccEEEEEEcCCC--CEEEEEeCCCcEEEEECC
Q 002782 15 VLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGG--SDTITALALSPDD--KLLFSSGHSREIRVWDLS 90 (882)
Q Consensus 15 ~~~~~y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~--~~~I~~l~~spd~--~~las~~~dg~i~iwd~~ 90 (882)
++..--.-+++.++|.|+-+|.+..-.+.|.|+...-....+-.| .-.|-...|||.. .+-++......-.+|++.
T Consensus 20 sl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred EEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence 333333345899999999999999888888888654322222223 3457778888754 344555555677799985
Q ss_pred C---CeeEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-eEEEEeecCCCcEEEEEEecCCCccEEEEEe
Q 002782 91 T---LKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (882)
Q Consensus 91 ~---~~~~~~~~~h~~~V~~l~fs~~~~-~lasg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs 165 (882)
. ...-..+.+|...|+.+-|.|... .||+++.|..+..||+.+. ..+..+..-...-+.++|+..... +.+.+
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~--vlass 177 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN--VLASS 177 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc--hhhhc
Confidence 3 345556789999999999999654 7899999999999999875 445555555566778889865443 55666
Q ss_pred CCCcEEEEECCCC-eEEEEecCcccceEEEEEcc-CCCEEEEEeCCCeEEEEecCC
Q 002782 166 DDATVRVWDLLAK-KCVATLDKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRD 219 (882)
Q Consensus 166 ~dg~I~vwd~~~~-~~~~~l~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~vwd~~~ 219 (882)
....|++||+..| .++..+++|...|.++.|.. ....+.+++.||+|+.||...
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 7778999999865 47788899999999998864 334678899999999999764
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.01 E-value=1e-07 Score=88.72 Aligned_cols=217 Identities=17% Similarity=0.073 Sum_probs=147.4
Q ss_pred EEEEeecCCeEEEEeCCCce-EEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhh
Q 002782 413 LIVTGSKDNSVRLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (882)
Q Consensus 413 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 491 (882)
.++.|+..|...+|...+.+ .+.....|...|+-+.-.-+...-+..++.|.++++.++...... ..
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~------------~~ 153 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK------------FA 153 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc------------ce
Confidence 38999999999999998654 333344454444333222222334778889999999998764211 11
Q ss_pred hcCC--CeeEEEEcCCCcEEEEEcCCCcEEEEeCCCce-e-EE-EEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782 492 AHGK--DINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-S-VV-TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (882)
Q Consensus 492 ~~~~--~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~-~-~~-~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~ 566 (882)
.|.. ..+++++++|++++++.+....|..|.++... . .. ........-.+..|+..+..+|+++.||++.|||++
T Consensus 154 ~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 154 VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVR 233 (344)
T ss_pred eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEec
Confidence 2322 37899999999999999999999999987542 2 22 223344556788999999999999999999999998
Q ss_pred CCcee-----eEeecCcCCEEEEEEEeCCC--EEEEeecCCeEEEEEcCCCeeEEEecc-------CCC-ceEEEEEcCC
Q 002782 567 DGSCL-----KTFEGHTSSVLRASFLTRGA--QIVSCGADGLVKLWTVRTGECIATYDK-------HED-KIWALAVGKK 631 (882)
Q Consensus 567 ~~~~~-----~~~~~h~~~v~~~~~s~~g~--~l~s~~~dg~i~iwd~~~~~~~~~~~~-------h~~-~v~~l~~s~~ 631 (882)
..... .+-..|.+.+..+.|++-|. +|+..-.-+.+.+-|++++.-.+.+.- |.. .|..-.|+.+
T Consensus 234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~ 313 (344)
T KOG4532|consen 234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE 313 (344)
T ss_pred ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCC
Confidence 65332 22345889999999998664 455544557899999999875554432 222 2666666666
Q ss_pred CCEEEEEeCC
Q 002782 632 TEMFATGGSD 641 (882)
Q Consensus 632 ~~~l~s~~~d 641 (882)
+.-+.+...+
T Consensus 314 n~s~~v~~e~ 323 (344)
T KOG4532|consen 314 NESNDVKNEL 323 (344)
T ss_pred Ccccccccch
Confidence 6555444433
No 286
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.2e-06 Score=93.18 Aligned_cols=213 Identities=16% Similarity=0.198 Sum_probs=140.9
Q ss_pred eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCC-----eEEEEecCCCCCCCCC
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQ 480 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~ 480 (882)
+.+.+.. ++.|+.+|.|.+.+-. -+.+..+.++...+...-+.-+++++|++.+.|+ .+++|+++.......
T Consensus 31 ~~s~~~~-vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s- 107 (933)
T KOG2114|consen 31 CSSSTGS-VVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS- 107 (933)
T ss_pred EcCCCce-EEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC-
Confidence 4466666 9999999998877633 2233556666666333344455566888887765 489999987642221
Q ss_pred cccc---cchh-hhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC----CceeEEEEecccCceEEEEEcCCCCEEE
Q 002782 481 PMNL---KAKA-VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP----DLVSVVTFRGHKRGIWSVEFSPVDQVVI 552 (882)
Q Consensus 481 ~~~~---~~~~-~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 552 (882)
|.-. .... .......++.+++++.+-+.+|+|-.+|.|..+.-+ .+....-......+|+.+++..+++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 1111 1111 112245688999999999999999999999988532 1222222233567899999999988733
Q ss_pred EeeCCCcEEEEecCCCc-eeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec-cCCCc
Q 002782 553 TASGDKTIKIWSISDGS-CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDK 622 (882)
Q Consensus 553 s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~ 622 (882)
-+..-..|.+|.+.... .+..+..|..++.|..|++....+++++. ..+.+|+.+.-..-.++. +|...
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEE
Confidence 33344679999998444 25557788889999999876665665554 569999987655556665 55544
No 287
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.99 E-value=5.1e-08 Score=92.07 Aligned_cols=192 Identities=15% Similarity=0.227 Sum_probs=138.0
Q ss_pred EEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCcee--EEEEe
Q 002782 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS--VVTFR 533 (882)
Q Consensus 456 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~--~~~~~ 533 (882)
.++-+..+|.|.++......... .+.......-......++.|++.+..++++..+|.+.+-+...... .+.++
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~----~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk 162 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSV----HLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK 162 (339)
T ss_pred eeeeccccceEEEEeeccceeee----eecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc
Confidence 46667778889888765432100 1111111111111356789999999999999999999766655544 34888
Q ss_pred cccCceEEEEEcCC-CCEEEEeeCCCcEEEEecC-CCceeeE-eecCcCCEEEEEEEe-CCCEEEEeecCCeEEEEEcC-
Q 002782 534 GHKRGIWSVEFSPV-DQVVITASGDKTIKIWSIS-DGSCLKT-FEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVR- 608 (882)
Q Consensus 534 ~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~- 608 (882)
+|.-+.|...|+.. .+++.+|+.|+.+..||++ .++++.. ..-|...|.++.-+| ++.++++|+.|..|++||.+
T Consensus 163 ~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 163 VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 99999999999864 4688999999999999998 4455544 456888998887775 67899999999999999998
Q ss_pred CCeeEEEeccCCCceEEEEEcCCC--CEEEEEeCCCCEEEEECCCHH
Q 002782 609 TGECIATYDKHEDKIWALAVGKKT--EMFATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 609 ~~~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~~dg~i~iw~~~~~~ 653 (882)
-++++..-. -.+.||.+..+|.- ..|+++..+| .+|-+.....
T Consensus 243 m~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~ 287 (339)
T KOG0280|consen 243 MGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKV 287 (339)
T ss_pred ccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccc
Confidence 467766544 34899999999854 3566666666 4666665543
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.99 E-value=9.1e-08 Score=89.08 Aligned_cols=232 Identities=11% Similarity=0.044 Sum_probs=151.4
Q ss_pred CCcEEEEEEcCCcEEEEeCCCceee-eeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeeccccc
Q 002782 365 EEQYLAVATNIEQVQVYDLSSMSCS-YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 443 (882)
Q Consensus 365 ~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 443 (882)
...+|+.|+..|...+|...+.+.. +....|...|.-.. -.-+...-+..++.|.++++.++..+..........-.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~--r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK--RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhh--hhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence 4568999999999999999865543 33334444333222 11122222667788888888887765443332222233
Q ss_pred EEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC
Q 002782 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (882)
Q Consensus 444 v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~ 523 (882)
+.+++++++++ ++++.+....|.+|.++...+... ..........-.+..|+.....+|++++||++.|||+
T Consensus 161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~-------~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIE-------NIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDV 232 (344)
T ss_pred eeeeEEcCCCc-eEEEecCCCcceEEEeCCccceee-------eeEecccCCCceeeeeccCcceEEEEecCCcEEEEEe
Confidence 78899999987 788888889999999876532111 1112223344578899999999999999999999999
Q ss_pred CCceeEE-----EEecccCceEEEEEcCCCC--EEEEeeCCCcEEEEecCCCceeeEee-------cCcC-CEEEEEEEe
Q 002782 524 PDLVSVV-----TFRGHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFE-------GHTS-SVLRASFLT 588 (882)
Q Consensus 524 ~~~~~~~-----~~~~h~~~v~~l~~s~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-------~h~~-~v~~~~~s~ 588 (882)
+...... +-..|++.+..+.|++-|. +|+..-.-+.+.+-|++++.-.+.+. .|.. .|....|+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 8753322 2234889999999998654 45555555789999999986654433 2322 366677777
Q ss_pred CCCEEEEeecCCeEEEEEc
Q 002782 589 RGAQIVSCGADGLVKLWTV 607 (882)
Q Consensus 589 ~g~~l~s~~~dg~i~iwd~ 607 (882)
++.-..+...+. +.=|++
T Consensus 313 ~n~s~~v~~e~~-~ae~ni 330 (344)
T KOG4532|consen 313 ENESNDVKNELQ-GAEYNI 330 (344)
T ss_pred CCcccccccchh-hheeec
Confidence 666555544432 333444
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.99 E-value=4.2e-07 Score=98.69 Aligned_cols=150 Identities=8% Similarity=-0.003 Sum_probs=92.3
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeeeecCCCc----------cE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 002782 31 GSFIACAC-GESINIVDLSNASIKSTIEGGSD----------TI-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (882)
Q Consensus 31 g~~la~~~-~~~I~i~d~~~~~~~~~l~~~~~----------~I-~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~ 98 (882)
+..++++. .+.+.-+|..+|+.+-....... .+ ..++. ++..+++++.+|.+.-+|.++|+.+.+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 33455544 45889999999998755543210 00 01111 3556778888999999999999988877
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEE-EEEecCCCccEEEEEeCCCcEEEEECCC
Q 002782 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSS-ILFHPDTDKSLLFSGSDDATVRVWDLLA 177 (882)
Q Consensus 99 ~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~-l~f~~~~~~~~l~sgs~dg~I~vwd~~~ 177 (882)
+........... .+..++.++.++.+.-+|..+|+.+.........+.. ..-+|--....++.++.+|.+..+|..+
T Consensus 147 ~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~ 224 (394)
T PRK11138 147 KVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQ 224 (394)
T ss_pred cCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccC
Confidence 643221111112 2346667778899999999999988776532111100 0001110011267778899999999998
Q ss_pred CeEEEEe
Q 002782 178 KKCVATL 184 (882)
Q Consensus 178 ~~~~~~l 184 (882)
|+.+...
T Consensus 225 G~~~W~~ 231 (394)
T PRK11138 225 GQLIWQQ 231 (394)
T ss_pred Chhhhee
Confidence 8865543
No 290
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=5.9e-08 Score=104.03 Aligned_cols=308 Identities=16% Similarity=0.170 Sum_probs=174.7
Q ss_pred EEEEEcCCCCEEEEEe----CCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEE
Q 002782 106 IGMACHPSGGLLATAG----ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 181 (882)
Q Consensus 106 ~~l~fs~~~~~lasg~----~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~ 181 (882)
+-..|+|...++|+++ ..|.|.||- ++|++..... ..-.+++++|+|. ..+|+.|-.-|.+.+|...+.+.-
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChH--HHHHhhccccceeEEEecCCceee
Confidence 4457888888888876 347788774 4444322211 2334677999995 466999999999999999888877
Q ss_pred EEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeec-----CcceeeEEEe--cCCCC------------
Q 002782 182 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP-----TYEMVEAVCA--IPPGS------------ 242 (882)
Q Consensus 182 ~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~--~~~~~------------ 242 (882)
.....|..+|..+.||++|..|+++..-|.|.+|..+....++..+ ..+.+.-.++ .+++.
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 7778899999999999999999999999999999987443333222 2222222222 22211
Q ss_pred ---Ccccccccchh---hhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCC
Q 002782 243 ---AFDSFLSSYNQ---QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN 316 (882)
Q Consensus 243 ---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (882)
.+.......+. .............|+.++.+|+|...|-...+....+ . +....+.|.+..
T Consensus 175 De~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k-~------------dS~vQmLf~~~~ 241 (1416)
T KOG3617|consen 175 DESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHK-L------------DSEVQMLFMGYC 241 (1416)
T ss_pred chhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEE-c------------cchHHHHHhccc
Confidence 11111111101 1111112224567888888998888775544221100 0 111233455666
Q ss_pred CcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCc---EEEEEEcCCcEEEEeCCCceeeeeee
Q 002782 317 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ---YLAVATNIEQVQVYDLSSMSCSYVLA 393 (882)
Q Consensus 317 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~l~~~~~~~~i~i~d~~~~~~~~~~~ 393 (882)
..++++..+-.+.++-...... ...+..+..+...+. -++++-..|.++ .....-+
T Consensus 242 eai~~i~e~lr~~l~~v~~~G~--------------~ee~~~vk~sgk~GgrqGgiA~sEssGvLr------~~eKyg~- 300 (1416)
T KOG3617|consen 242 EAISIIIEFLRDCLIFVLAKGT--------------SEERCAVKVSGKLGGRQGGIACSESSGVLR------KSEKYGL- 300 (1416)
T ss_pred ceEEEEeeeceeeEEEecCCCc--------------hHHhhhhhhccccCCccCcccccccccccc------CCcchhh-
Confidence 6677777776666665543221 111111111111110 133333333111 1111111
Q ss_pred CCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc-------eEEee---eecccccEEEEEEccCCC
Q 002782 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-------CCVGV---GTGHMGAVGAVAFSKKLQ 454 (882)
Q Consensus 394 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~---~~~~~~~v~~v~~s~~~~ 454 (882)
.....++|+. +...+.. +..|.+.|.+.+|--... .-... .....+.|+.+.|.|-.+
T Consensus 301 e~ge~~~c~c--Y~~~~~~-l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~ 368 (1416)
T KOG3617|consen 301 ELGEGILCMC--YGEKEIR-LWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKS 368 (1416)
T ss_pred hcCCceEEEE--EeccceE-EEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccc
Confidence 1234577776 6666665 899999999999943221 11222 223457889999988644
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=1.2e-07 Score=102.23 Aligned_cols=178 Identities=8% Similarity=0.058 Sum_probs=118.3
Q ss_pred ceEEccCCCE-EEEEe-C---CeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEE-eC--CCcEEEEECCCCeeE
Q 002782 24 PLVVSSDGSF-IACAC-G---ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GH--SREIRVWDLSTLKCL 95 (882)
Q Consensus 24 ~va~s~dg~~-la~~~-~---~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~-~~--dg~i~iwd~~~~~~~ 95 (882)
...|||||+. +++.. . ..|.++|+.+|+...... ..+...+.+|||||+.|+.. +. +..|.++|+.++..
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~- 269 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL- 269 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-
Confidence 4679999985 66533 2 269999999998655443 44556778899999887754 33 35788889888764
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCC-----
Q 002782 96 RSWKGHDGPAIGMACHPSGGLLATAGAD---RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD----- 167 (882)
Q Consensus 96 ~~~~~h~~~V~~l~fs~~~~~lasg~~d---g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~d----- 167 (882)
+.+..+........|+|||+.|+..+.. ..|.+.|+.++........ .. ....|+||++. ++++....
T Consensus 270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~-Ia~~~~~~~~~~~ 345 (419)
T PRK04043 270 TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNY-IVYSSRETNNEFG 345 (419)
T ss_pred EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCE-EEEEEcCCCcccC
Confidence 3444444434556899999988887632 3688889988876433221 11 12489999876 33333332
Q ss_pred ---CcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782 168 ---ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (882)
Q Consensus 168 ---g~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d 209 (882)
..|.+.|+.++... .+... .......|+|||+.++....+
T Consensus 346 ~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 346 KNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred CCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 36888898887643 34333 233468899999988776543
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=4.5e-09 Score=106.84 Aligned_cols=249 Identities=15% Similarity=0.217 Sum_probs=174.6
Q ss_pred eeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC-------ceEEeeeecccccEEEEEEccCCCcEEEEeeC
Q 002782 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS 462 (882)
Q Consensus 390 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~ 462 (882)
..+.||...|..+. ...+.+. ++++++|.+|++|.+.. ..+..++..|..+|..+.|-.+.+ .+ ++-
T Consensus 729 ~nf~GH~~~iRai~--AidNENS-FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i--~Sc 802 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIA--AIDNENS-FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SI--ASC 802 (1034)
T ss_pred ecccCcHHHhHHHH--hcccccc-eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-ee--eec
Confidence 35678999988886 5556666 99999999999998753 346677889999999999988855 34 456
Q ss_pred CCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEE-EEEcCCCcEEEEeCCCceeEEEEec-----cc
Q 002782 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV-CTGSQDRTACVWRLPDLVSVVTFRG-----HK 536 (882)
Q Consensus 463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-a~~s~dg~i~iwd~~~~~~~~~~~~-----h~ 536 (882)
||.|.+||---+..-. ........+..+.|.|+.- -+..++ |.++...+|+++|.+.++-...++. .+
T Consensus 803 D~giHlWDPFigr~La-----q~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLA-----QMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred cCcceeecccccchhH-----hhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 8899999954331100 0000001111223333321 133344 4447889999999999877666653 34
Q ss_pred CceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEE-EEcCCCeeEEE
Q 002782 537 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL-WTVRTGECIAT 615 (882)
Q Consensus 537 ~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~i-wd~~~~~~~~~ 615 (882)
.-+.+++..+.|+.++++-.+|.|.+.|.++|+.+..++.-......++- |..+.|+....|.++.+ |..-+|....+
T Consensus 877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeec
Confidence 56889999999999999999999999999999999887755544444433 56678888888999999 98888877766
Q ss_pred eccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782 616 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 616 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~ 653 (882)
......+..-+ -.-|.-|+++.....+.+|....+.
T Consensus 956 ~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ 991 (1034)
T KOG4190|consen 956 DKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAEL 991 (1034)
T ss_pred cCCCCcchhhh--hccCceeEEeccCcEEEEEecchhh
Confidence 66444432222 1246678888888889999876543
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.94 E-value=6.4e-09 Score=102.64 Aligned_cols=160 Identities=19% Similarity=0.251 Sum_probs=106.6
Q ss_pred EEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEE---cCCCcEEEEeCC
Q 002782 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG---SQDRTACVWRLP 524 (882)
Q Consensus 448 ~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~---s~dg~i~iwd~~ 524 (882)
..++.++ +++.+..+....++++..... ......... -....+++.|..+.....++ +....+.+|...
T Consensus 69 ~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~---v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 69 LTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVSC---VPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEee---cccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 3444444 666666666666666554321 000001111 11223445554444444444 344455666655
Q ss_pred CceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEe-ecCcCCEEEEEEEeCCCEEEEeecCCeEE
Q 002782 525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF-EGHTSSVLRASFLTRGAQIVSCGADGLVK 603 (882)
Q Consensus 525 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~i~ 603 (882)
.+. ...+-||-+.++.++|+||+++|+++..|..|++-....--.+..| -||..-|..++.-++ ..|+|+|.|++|+
T Consensus 141 ~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 141 SGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR 218 (390)
T ss_pred ccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence 533 3445679999999999999999999999999999887665555555 479999999998765 4589999999999
Q ss_pred EEEcCCCeeEEEec
Q 002782 604 LWTVRTGECIATYD 617 (882)
Q Consensus 604 iwd~~~~~~~~~~~ 617 (882)
+||+.+|+++.+++
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 99999999887664
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.94 E-value=3e-08 Score=93.96 Aligned_cols=250 Identities=22% Similarity=0.328 Sum_probs=167.1
Q ss_pred CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce-----EEeeeeccc------------ccEEEEEEcc-CCCcEE
Q 002782 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----CVGVGTGHM------------GAVGAVAFSK-KLQNFL 457 (882)
Q Consensus 396 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~v~~s~-~~~~~l 457 (882)
.+.|+++. +...|.+ +++|.+.|.|.+|.-.... ....+++|. ..|..+.|.. .+.+.+
T Consensus 26 ad~ItaVe--fd~tg~Y-latGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVE--FDETGLY-LATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEE--eccccce-EeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 34566666 6677776 9999999999999765432 112244443 3567777754 445567
Q ss_pred EEeeCCCeEEEEecCCCCC----------CCCCcc----------------------cccch-hhhhhcCCCeeEEEEcC
Q 002782 458 VSGSSDHTIKVWSFDGLSD----------DAEQPM----------------------NLKAK-AVVAAHGKDINSLAVAP 504 (882)
Q Consensus 458 ~s~~~dg~i~~wd~~~~~~----------~~~~~~----------------------~~~~~-~~~~~~~~~i~~~~~s~ 504 (882)
+..+.|++|++|.+..... ....+. ...+. ....+|...|+++.|..
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 7788999999998754310 000000 00111 12256778899999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCc---eeEEEEeccc-----CceEEEEEcCCC-CEEEEeeCCCcEEEEecCCCce-----
Q 002782 505 NDSLVCTGSQDRTACVWRLPDL---VSVVTFRGHK-----RGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSC----- 570 (882)
Q Consensus 505 ~~~~la~~s~dg~i~iwd~~~~---~~~~~~~~h~-----~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~----- 570 (882)
|...+.++ .|-.|-+|++.-. -.+..+++|. .-|++..|+|.. ..+...+..|.|++-|++....
T Consensus 183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 98888776 4678999987633 3344455554 348889999954 4556667779999999973211
Q ss_pred -----------eeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCC-eeEEEeccCC------------Cce---
Q 002782 571 -----------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-ECIATYDKHE------------DKI--- 623 (882)
Q Consensus 571 -----------~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~------------~~v--- 623 (882)
+.-|.+-..+|..+.|+++|+++++-+. -+|+|||+... .++.++..|. +.|
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 1112233467889999999999988655 57999999864 5777775442 233
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782 624 WALAVGKKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 624 ~~l~~s~~~~~l~s~~~dg~i~iw~~~ 650 (882)
..+.||.|...+.+|+.....-++-..
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred EEEEecCCcccccccccccceeeeccc
Confidence 347889999999999988887777633
No 295
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=1.4e-08 Score=107.14 Aligned_cols=277 Identities=17% Similarity=0.252 Sum_probs=179.6
Q ss_pred CCcEEEEEEcCCcEEEEeCCC-ceeeeeeeCCCc--ceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC---ceEEeeee
Q 002782 365 EEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSE--IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---RCCVGVGT 438 (882)
Q Consensus 365 ~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~--~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~ 438 (882)
.++-++.++.- .+.+.|+.. +...+.+. |.. .+....+...|.... -++......-.+|++.. ...-..+.
T Consensus 35 ~grdi~lAsr~-gl~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~-wiVsts~qkaiiwnlA~ss~~aIef~lh 111 (1081)
T KOG0309|consen 35 SGRDIVLASRQ-GLYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPY-WIVSTSNQKAIIWNLAKSSSNAIEFVLH 111 (1081)
T ss_pred ccchhhhhhhc-CeEEEeccCCCCCceeee-ccCcchhcceecccCCCCce-eEEecCcchhhhhhhhcCCccceEEEEe
Confidence 34445555553 345555543 22222222 222 233333334455555 34444455566888753 33444577
Q ss_pred cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcE
Q 002782 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA 518 (882)
Q Consensus 439 ~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i 518 (882)
+|...|+.+-|.|+.+.++++++-|-.+..||+..... +......-...-..+.|+-...-+.+.+..+.|
T Consensus 112 ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---------p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 112 GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---------PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred cCccceeccccCCCCCcceeeccccccceeeeccCCCc---------ceeeeecccccCceeeecccCcchhhhccCCce
Confidence 99999999999999998999999999999999986521 222222233455678888755555556677889
Q ss_pred EEEeCCCc-eeEEEEecccCceEEEEEcCC-CCEEEEeeCCCcEEEEecCCCcee-eEeecCcCCEEEEEEEeCCCEEEE
Q 002782 519 CVWRLPDL-VSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCL-KTFEGHTSSVLRASFLTRGAQIVS 595 (882)
Q Consensus 519 ~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~s~~g~~l~s 595 (882)
.+||++.+ .++..+++|...|..++|..- ...+.+++.|++|+.||......- ........+|..-++.|-|.-...
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 99999865 678889999999999998753 457888999999999998755322 112224456777777775542211
Q ss_pred e--ec---------CCeEEEEEcCCC-eeEEEeccCCCceEEEEEcCCC----------CEEEEEeCCCCEEEEECCCHH
Q 002782 596 C--GA---------DGLVKLWTVRTG-ECIATYDKHEDKIWALAVGKKT----------EMFATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 596 ~--~~---------dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~----------~~l~s~~~dg~i~iw~~~~~~ 653 (882)
- -. +..-..|++.++ +++.+|.+|.+.|....|-..+ -.|+|-+.|..+++|-+....
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i 342 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQI 342 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHHH
Confidence 1 11 122334555443 6889999999998777664322 269999999999999987654
No 296
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=7.9e-07 Score=95.81 Aligned_cols=212 Identities=9% Similarity=0.025 Sum_probs=127.6
Q ss_pred CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCE-EEEEeec--CCeEEEEeCCCceEEeeeecccccEEEEEEccC
Q 002782 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI-LIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (882)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~ 452 (882)
..|.+-|...........+ . ....-. ++|+|+. ++++... +..|.++|+.+++...... ..+......|+|+
T Consensus 169 ~~l~~~d~dg~~~~~~~~~-~-~~~~p~--wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPD 243 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG-G-LNIFPK--WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKD 243 (419)
T ss_pred ceEEEECCCCCceeEEccC-C-CeEeEE--ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCC
Confidence 3555555544433323333 2 444444 8999985 3333332 4578889998887655433 4455667889999
Q ss_pred CCcEEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CC--cEEEEeCCCce
Q 002782 453 LQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLV 527 (882)
Q Consensus 453 ~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg--~i~iwd~~~~~ 527 (882)
|+.++++.+.++ .|.++++..+. .. .+..+........|+|||+.|+..+. .+ .|.++|+.+++
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~----------~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKT----------LT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCc----------EE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 987777766554 45566665431 11 11112222334579999988776653 23 58888888776
Q ss_pred eEEEEecccCceEEEEEcCCCCEEEEeeCC---------CcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeec
Q 002782 528 SVVTFRGHKRGIWSVEFSPVDQVVITASGD---------KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598 (882)
Q Consensus 528 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 598 (882)
......... ....|||||+.|+..+.. ..|.+.|+.++... .+... .......|+|||+.++....
T Consensus 313 ~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 313 VEQVVFHGK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred eEeCccCCC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEc
Confidence 643332111 124899999988876643 36888898877643 33322 22335789999998876665
Q ss_pred CC---eEEEEEcC
Q 002782 599 DG---LVKLWTVR 608 (882)
Q Consensus 599 dg---~i~iwd~~ 608 (882)
++ .+.+.++.
T Consensus 388 ~~~~~~L~~~~l~ 400 (419)
T PRK04043 388 LGNQSALGIIRLN 400 (419)
T ss_pred cCCcEEEEEEecC
Confidence 33 35566663
No 297
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=3.7e-09 Score=101.67 Aligned_cols=169 Identities=18% Similarity=0.273 Sum_probs=129.9
Q ss_pred EEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-
Q 002782 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL- 526 (882)
Q Consensus 448 ~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~- 526 (882)
+|+-+-..+-++.+.+..+-+-++.++- ...+ ...++|.++.|...+.++..|..+|.|..+|++..
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~-----------~qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGH-----------QQSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccc-----------cccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecc
Confidence 4443322234666777778888887652 1122 25568889999998999999999999999999764
Q ss_pred ----eeEEEEecccCceEEEEEcC-CCCEEEEeeCCCcEEEEecCCCce---eeEeecCcCCEEEEEE--EeCCCEEEEe
Q 002782 527 ----VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDGSC---LKTFEGHTSSVLRASF--LTRGAQIVSC 596 (882)
Q Consensus 527 ----~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~--s~~g~~l~s~ 596 (882)
.+...+. |.+.|+++..-. ++++|.+.+.+|.|++||++--+| +.+++||.+.-..+-+ .+....++++
T Consensus 286 qG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 286 QGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred cCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence 3444444 899999998776 789999999999999999987777 9999999876555544 4566789999
Q ss_pred ecCCeEEEEEcCCCeeEEEeccC----CCceEEEEEc
Q 002782 597 GADGLVKLWTVRTGECIATYDKH----EDKIWALAVG 629 (882)
Q Consensus 597 ~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~s 629 (882)
|.|...+||.++.|..+.++... +..+++++|.
T Consensus 365 GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 99999999999999999888643 3356777764
No 298
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=98.91 E-value=1e-08 Score=91.53 Aligned_cols=126 Identities=16% Similarity=0.245 Sum_probs=111.6
Q ss_pred ccchHHHhhhccchHHHHHHHh-hcCCchhHHHHHHHHHhcchhHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcchHHH
Q 002782 668 RGQELENAVLDADYTKAIQVAF-ELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVA 746 (882)
Q Consensus 668 ~~~~~~~~~~~~~~~~a~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~~ 746 (882)
+.+..+.++...+|.+|+..|+ ....|.....++.++.++ ..+..||..+++..+.++|+|+..++++++++.++
T Consensus 21 kl~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL~~R----~~L~~AL~~Rde~~L~piL~Fl~k~i~~pr~~~~l 96 (148)
T PF09384_consen 21 KLSKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLEELIRR----GALRAALAGRDEESLEPILKFLIKNITDPRYTRIL 96 (148)
T ss_pred cchHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHHHHc----cHHHHHHHhCCHHHHHHHHHHHHHhCCCcccHHHH
Confidence 4567788999999999999999 777787777777666544 48999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCcchhhcccChHhHHhhhccchhhHHHHHHHHHhhhhhhhe
Q 002782 747 QFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDY 798 (882)
Q Consensus 747 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~ 798 (882)
..++..||.+|+ ..+...+.+.+.+..|..-+++..+....|++..++||.
T Consensus 97 ~~v~~~ildiY~-~~~~~s~~v~~~~~~L~~~v~~E~~~~~~l~~l~G~ld~ 147 (148)
T PF09384_consen 97 VDVANIILDIYS-PVIGQSPEVDKLFQKLQRKVQEELQLQKELLELQGMLDM 147 (148)
T ss_pred HHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 999999999998 667777888889999999999999999999999998875
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.88 E-value=3.1e-06 Score=91.95 Aligned_cols=263 Identities=9% Similarity=0.035 Sum_probs=152.8
Q ss_pred cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccE--
Q 002782 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV-- 444 (882)
Q Consensus 367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-- 444 (882)
..+++++.++.+..+|..+++.......... +.+-. ... +.. ++.+..++.+..+|..+|+.+.........+
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~ssP--~v~-~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-ALSRP--VVS-DGL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCc-eecCC--EEE-CCE-EEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 3455566667777777777776655443221 21111 112 334 5667778899999999998877655321111
Q ss_pred ---EEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcC-CCeeEEEEcC--CCcEEEEEcCCCcE
Q 002782 445 ---GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG-KDINSLAVAP--NDSLVCTGSQDRTA 518 (882)
Q Consensus 445 ---~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~--~~~~la~~s~dg~i 518 (882)
.+.... + . .++.++.++.+..+|..++...-...... . ...+. .....+..+| .+..+++++.+|.+
T Consensus 196 ~~~~sP~v~-~-~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~-~---~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l 268 (394)
T PRK11138 196 RGESAPATA-F-G-GAIVGGDNGRVSAVLMEQGQLIWQQRISQ-P---TGATEIDRLVDVDTTPVVVGGVVYALAYNGNL 268 (394)
T ss_pred cCCCCCEEE-C-C-EEEEEcCCCEEEEEEccCChhhheecccc-C---CCccchhcccccCCCcEEECCEEEEEEcCCeE
Confidence 011111 1 2 46667778888888877653211000000 0 00000 0001111122 24456667788999
Q ss_pred EEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCC-EEEEEEEeCCCEEEEee
Q 002782 519 CVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGAQIVSCG 597 (882)
Q Consensus 519 ~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~s~~ 597 (882)
..+|..+++.+-.... .....+. .++..++.++.+|.+..+|..+|+.+.....-... ...... .+.+|+.++
T Consensus 269 ~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~ 342 (394)
T PRK11138 269 VALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD 342 (394)
T ss_pred EEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe
Confidence 9999999987654432 1111222 24667888889999999999999877654321111 111112 256788899
Q ss_pred cCCeEEEEEcCCCeeEEEeccCCCceEE-EEEcCCCCEEEEEeCCCCEEEEEC
Q 002782 598 ADGLVKLWTVRTGECIATYDKHEDKIWA-LAVGKKTEMFATGGSDALVNLWHD 649 (882)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~iw~~ 649 (882)
.||.|.+.|..+|+.+...+.....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 9999999999999998887654444433 222 3447888899999888764
No 300
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=98.83 E-value=6.7e-09 Score=89.09 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=84.0
Q ss_pred hHHHHHHHHhccCHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHhccCCcchhhcc-cChHhHHhhhccchhhHHHHH
Q 002782 710 AELQIEKALHALGKEEIRQLLEYVREWNT--KPKLCHVAQFVLFQLFNIHPPTEIIEI-KGISDVLEGLIPYTQRHFSRI 786 (882)
Q Consensus 710 ~~~~l~~~~~~l~~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~ 786 (882)
....++.++..||+.++.+||+|+.+|.. ++.+.+++..|+++||..|+ ..+... +.+.+.|..|+..++++.+.+
T Consensus 14 ~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~-~~l~~~~~~~~~~L~~L~~~l~~~~~~l 92 (110)
T PF04003_consen 14 PPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHG-SYLSSSSPELRPVLRSLQKILRERLQNL 92 (110)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999999999999999885 77899999999999999999 777777 999999999999999999999
Q ss_pred HHHHhhh-hhhheecccc
Q 002782 787 DRLVRST-FLLDYTLTGM 803 (882)
Q Consensus 787 ~~l~~~~-~~~~~~~~~~ 803 (882)
.++++.. +.|+|...+|
T Consensus 93 ~~l~~~n~~~L~~l~~q~ 110 (110)
T PF04003_consen 93 SKLLDLNLGRLDYLLSQI 110 (110)
T ss_pred HHHHHHhHHHHHHHHHhC
Confidence 9999888 8888866543
No 301
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.81 E-value=1.2e-05 Score=85.61 Aligned_cols=164 Identities=21% Similarity=0.201 Sum_probs=98.0
Q ss_pred ccCCCEEEEEe----------CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 002782 28 SSDGSFIACAC----------GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS 97 (882)
Q Consensus 28 s~dg~~la~~~----------~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~ 97 (882)
||||++++... .+.+.|+|+++++....... ...+....|||+|+.+|... ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 79999998843 34699999999876654443 56788999999999998876 47899999988855432
Q ss_pred e-ecC----------------CCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCeEEEEeecCC---CcEEEEEEecCC
Q 002782 98 W-KGH----------------DGPAIGMACHPSGGLLATAGAD-RKVLVWDVDGGFCTHYFKGHK---GVVSSILFHPDT 156 (882)
Q Consensus 98 ~-~~h----------------~~~V~~l~fs~~~~~lasg~~d-g~v~vwd~~~~~~~~~~~~h~---~~V~~l~f~~~~ 156 (882)
- .|- -+.-.++.|||||++||....| ..|..+.+. ...... ..+..+.+-.-|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~------~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP------DYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE------EESSSTESS-EEEEEE--BTT
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee------ccCCccccCCcccccccCCCC
Confidence 2 220 1123568899999999987643 555554431 111111 134444443223
Q ss_pred CccEEEEEeCCCcEEEEECCCCeEEE--Ee---cCcccceEEEEEccCCCEEEE
Q 002782 157 DKSLLFSGSDDATVRVWDLLAKKCVA--TL---DKHFSRVTSMAITSDGSTLIS 205 (882)
Q Consensus 157 ~~~~l~sgs~dg~I~vwd~~~~~~~~--~l---~~h~~~v~~l~~s~~~~~l~s 205 (882)
...-. -.+.|+|+.+++... .. ......+..+.|.+++..|+.
T Consensus 153 ~~np~------v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 153 DPNPR------VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp S---E------EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CcCCc------eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 32111 136778888877532 11 233457889999999874433
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.80 E-value=2.8e-06 Score=85.43 Aligned_cols=218 Identities=17% Similarity=0.156 Sum_probs=139.2
Q ss_pred CCeEEEEEcCCCceeeeecCC--CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCE
Q 002782 39 GESINIVDLSNASIKSTIEGG--SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGL 116 (882)
Q Consensus 39 ~~~I~i~d~~~~~~~~~l~~~--~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~ 116 (882)
.+.|..||..+|+.+-...-. .....+. ..+++.++++++.++.|..||..+|+.+.++.. ..++.... ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 357899999999988766431 1222222 333567788888999999999999999888775 22222211 224456
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEe-ecCC---CcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccc--
Q 002782 117 LATAGADRKVLVWDVDGGFCTHYF-KGHK---GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR-- 190 (882)
Q Consensus 117 lasg~~dg~v~vwd~~~~~~~~~~-~~h~---~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~-- 190 (882)
+++++.++.+..+|..+|+.+... .... ..........+++. ++.+..++.|..+|+.+|+.+.....+...
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR--LYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE--EEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCE--EEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 677778889999999999998884 3321 11222233333343 888888999999999999998777654322
Q ss_pred --------eEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccc
Q 002782 191 --------VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 262 (882)
Q Consensus 191 --------v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (882)
+.+-....++ .++.++.++.+..+|+.+++.....+ ......... ..
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~~-~~---------------------- 211 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLPS-VD---------------------- 211 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECEE-CC----------------------
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCce-ee----------------------
Confidence 1222233344 77777777754444999988665443 222222111 11
Q ss_pred cceEEEEEcCCCeEEEEECCCceee
Q 002782 263 LEIHFITVGERGIVRMWNADSACLY 287 (882)
Q Consensus 263 ~~~~~~~~~~~g~v~~w~~~~~~~~ 287 (882)
...+++.+.++.+..||..++...
T Consensus 212 -~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 212 -GGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp -CTEEEEEETTTEEEEEETTTTEEE
T ss_pred -CCEEEEEeCCCEEEEEECCCCCEE
Confidence 125666668999999999998543
No 303
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.78 E-value=5.8e-05 Score=70.67 Aligned_cols=200 Identities=16% Similarity=0.148 Sum_probs=123.7
Q ss_pred ccccCCceEEccCCCEEEEEe-CC-eEEEEEcCCCceeeee-cCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 002782 18 QFYGGGPLVVSSDGSFIACAC-GE-SINIVDLSNASIKSTI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC 94 (882)
Q Consensus 18 ~~y~g~~va~s~dg~~la~~~-~~-~I~i~d~~~~~~~~~l-~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~ 94 (882)
..-.+.++.+-+|.+.+++.+ .. .+.-.|..+|...-.- -+..-.-.++. -|++++.|..+|.+++-+.++|+.
T Consensus 9 kCVDaspLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~ 85 (354)
T KOG4649|consen 9 KCVDASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQ 85 (354)
T ss_pred hhccCCcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhh
Confidence 333456778888887655544 33 6778899999876322 22222222232 477899999999999999999988
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEE
Q 002782 95 LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (882)
Q Consensus 95 ~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd 174 (882)
...+..-..-=.....++++.++..|+.|++...-|..+..++...+...+...+-+..|-... |+.+...|.|.--.
T Consensus 86 ~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s--ly~a~t~G~vlavt 163 (354)
T KOG4649|consen 86 IWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS--LYAAITAGAVLAVT 163 (354)
T ss_pred eeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce--EEEEeccceEEEEc
Confidence 8877654433344567889999999999999999999999999887755554445555553233 55555556555444
Q ss_pred CCCCeEEEEecCc--ccceEE--EEEccCCCEEEEEeCCCeEEEEecCCceeeeeec
Q 002782 175 LLAKKCVATLDKH--FSRVTS--MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (882)
Q Consensus 175 ~~~~~~~~~l~~h--~~~v~~--l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 227 (882)
.++... .++-.| .+++.+ ++. +..+..++-||.+.-++ ..++.+....
T Consensus 164 ~~~~~~-~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 164 KNPYSS-TEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred cCCCCc-ceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 433311 111111 112211 111 33455566677777666 4444444433
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.76 E-value=0.00069 Score=77.40 Aligned_cols=285 Identities=14% Similarity=0.103 Sum_probs=151.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC----CCCe
Q 002782 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV----DGGF 135 (882)
Q Consensus 60 ~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~----~~~~ 135 (882)
.+.|.++.|..++.-++.+..+|.|.+-|.++..... ...-...|.+++||||+++++..+..+++.+-+- -..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 4689999999999999999999999999887764322 2224588999999999999999988787766432 2222
Q ss_pred EEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEe----CC-C
Q 002782 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----RD-K 210 (882)
Q Consensus 136 ~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~----~d-g 210 (882)
.+..-....+....+-|-.... -+.|+. |....-+............-.+.=++++|--||+++++.. .+ +
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeT---qfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKET---QFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred ccccccccccccceecccccce---eeecch-hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 2211000111222222322111 111111 1111111111100000001122345689999999988742 23 7
Q ss_pred eEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeec
Q 002782 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290 (882)
Q Consensus 211 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~ 290 (882)
.|++||-+..-.....+....-.++.+-|.|..++ .+-.-+.++.|.++..++-.-
T Consensus 223 kirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA--------------------~iq~~~sd~~IvffErNGL~h---- 278 (1265)
T KOG1920|consen 223 KIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIA--------------------AIQCKTSDSDIVFFERNGLRH---- 278 (1265)
T ss_pred eEEEecccchhhcccCcccccccceeecCCCCeEe--------------------eeeecCCCCcEEEEecCCccc----
Confidence 89999987222222233333445566666554332 122233455677766544310
Q ss_pred CCceeeeeccCCcCcceeEEEEccCCCcEEEE---EeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCc
Q 002782 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCV---TADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (882)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 367 (882)
..... ..+.....+..+.|..+..-|++. ..+..+.+|...... ..+...... ..... +.|.|....
T Consensus 279 -g~f~l--~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh---WYLKq~l~~---~~~~~-~~W~p~~~~ 348 (1265)
T KOG1920|consen 279 -GEFVL--PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH---WYLKQELQF---SQKAL-LMWDPVTEK 348 (1265)
T ss_pred -ccccc--CCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE---EEEEEEEec---ccccc-ccccCCCce
Confidence 00000 011111226788898888888773 345558898876421 111111111 11111 666666666
Q ss_pred EEEEEEcCCcEEEEeC
Q 002782 368 YLAVATNIEQVQVYDL 383 (882)
Q Consensus 368 ~l~~~~~~~~i~i~d~ 383 (882)
.+.+-..+|...+++.
T Consensus 349 ~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 349 TLHVLRESGQRLVRDF 364 (1265)
T ss_pred eEEEEecCCcEEEEEE
Confidence 6666666677666654
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=9e-06 Score=80.38 Aligned_cols=205 Identities=17% Similarity=0.201 Sum_probs=143.7
Q ss_pred CCceEEccC-CCEEEEEe--CCeEEEEEcCCCceeeeecCCCcc--EEEEEEcCCCCEEEEE-----eCCCcEEEEECC-
Q 002782 22 GGPLVVSSD-GSFIACAC--GESINIVDLSNASIKSTIEGGSDT--ITALALSPDDKLLFSS-----GHSREIRVWDLS- 90 (882)
Q Consensus 22 g~~va~s~d-g~~la~~~--~~~I~i~d~~~~~~~~~l~~~~~~--I~~l~~spd~~~las~-----~~dg~i~iwd~~- 90 (882)
|+.++.+|+ +..++++- +.-..+||..+++..+.+....+. --.-+|||||++|++. ...|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 457899994 45555554 337999999999988777543322 1246899999999986 346899999998
Q ss_pred CCeeEEEeecCCCCEEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCeEEEE--e--ecCCCcEE
Q 002782 91 TLKCLRSWKGHDGPAIGMACHPSGGLLATAG------------------ADRKVLVWDVDGGFCTHY--F--KGHKGVVS 148 (882)
Q Consensus 91 ~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~------------------~dg~v~vwd~~~~~~~~~--~--~~h~~~V~ 148 (882)
+.+.+..|..|.-.-..+.+.|||+.|+++- .+.++..-|..+|..+.. + .-|...|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 7788889988877778899999998777752 134566778888887766 4 23778899
Q ss_pred EEEEecCCCccEEEEEeCCC-------cEEEEECCCCeEEEEec-------CcccceEEEEEccCCCEEE-EEeCCCeEE
Q 002782 149 SILFHPDTDKSLLFSGSDDA-------TVRVWDLLAKKCVATLD-------KHFSRVTSMAITSDGSTLI-SAGRDKVVN 213 (882)
Q Consensus 149 ~l~f~~~~~~~~l~sgs~dg-------~I~vwd~~~~~~~~~l~-------~h~~~v~~l~~s~~~~~l~-s~~~dg~i~ 213 (882)
.+++.+++.- ++..-..| .|-+++.. ..+..+. .-.+.+-++++++++.+++ |+-+.+.+.
T Consensus 167 HLa~~~~G~V--~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 167 HLAVDGDGTV--AFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred eEEecCCCcE--EEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 9999987642 33332222 23333322 2222221 2235788999999998775 555788999
Q ss_pred EEecCCceeeeeecCcc
Q 002782 214 LWDLRDYSCKLTVPTYE 230 (882)
Q Consensus 214 vwd~~~~~~~~~~~~~~ 230 (882)
+||..++..+...+..+
T Consensus 243 ~~d~~tg~~~~~~~l~D 259 (305)
T PF07433_consen 243 VWDAATGRLLGSVPLPD 259 (305)
T ss_pred EEECCCCCEeeccccCc
Confidence 99999998887766544
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=3.5e-08 Score=95.15 Aligned_cols=155 Identities=20% Similarity=0.355 Sum_probs=123.7
Q ss_pred CCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eeEEEeecCCCCE
Q 002782 31 GSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL-----KCLRSWKGHDGPA 105 (882)
Q Consensus 31 g~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~-----~~~~~~~~h~~~V 105 (882)
|-+.++|....|.+.|++||-.... . ....|.++.|.-.+.++..|.++|.|...|+..+ .+...+- |...|
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~qsf-~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssv 301 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQSF-Q-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSV 301 (425)
T ss_pred eeeecccccceeEEEEeeccccccc-c-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcch
Confidence 3344455555899999999876443 3 4567899999999999999999999999999765 3444443 88999
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE---EEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEE
Q 002782 106 IGMACHP-SGGLLATAGADRKVLVWDVDGGFC---THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 181 (882)
Q Consensus 106 ~~l~fs~-~~~~lasg~~dg~v~vwd~~~~~~---~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~ 181 (882)
+++..-. ++++|.+.+-+|.|++||..--++ +..+.||-..-.-+-++-+.....++++++|...++|.+.++..+
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 9998877 788899889999999999976666 888888877666666665556667999999999999999999999
Q ss_pred EEecCcc
Q 002782 182 ATLDKHF 188 (882)
Q Consensus 182 ~~l~~h~ 188 (882)
.+++...
T Consensus 382 ~tipf~~ 388 (425)
T KOG2695|consen 382 CTIPFPY 388 (425)
T ss_pred eccCCCC
Confidence 8886543
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.73 E-value=3e-05 Score=78.16 Aligned_cols=219 Identities=11% Similarity=0.033 Sum_probs=140.2
Q ss_pred EEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeee
Q 002782 358 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 437 (882)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 437 (882)
+..|.+.++.++.+-...+.|..|+..++.... +.... ...+. +...+.. ++.+... .+.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~--~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMA--FDRPDGR-LYVADSG-GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEE--EECTTSE-EEEEETT-CEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEE--EEccCCE-EEEEEcC-ceEEEecCCCcEEEEe
Confidence 345666577777777778999999998886653 22222 34443 5523344 4444444 4556699988655444
Q ss_pred ec-----ccccEEEEEEccCCCcEEEEeeCC--------CeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC
Q 002782 438 TG-----HMGAVGAVAFSKKLQNFLVSGSSD--------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (882)
Q Consensus 438 ~~-----~~~~v~~v~~s~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (882)
.. .....+.+++.++|. +.++.... |.+..++.. . ........-...+.++|+|
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~-----------~~~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G-----------KVTVVADGLGFPNGIAFSP 143 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-----------EEEEEEEEESSEEEEEEET
T ss_pred eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C-----------eEEEEecCcccccceEECC
Confidence 32 456788999999987 55555433 345555544 1 1111122334568999999
Q ss_pred CCcEEE-EEcCCCcEEEEeCCCcee----EEEE---ecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeec
Q 002782 505 NDSLVC-TGSQDRTACVWRLPDLVS----VVTF---RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 576 (882)
Q Consensus 505 ~~~~la-~~s~dg~i~iwd~~~~~~----~~~~---~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 576 (882)
+++.|+ +-+..+.|..+++..... ...+ .......-.+++..+|++.++....+.|.+++.+ |+.+..+..
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL 222 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence 998665 667778899998853211 1222 2222247889999999998888888999999976 998888887
Q ss_pred CcCCEEEEEEE-eCCCEEEEee
Q 002782 577 HTSSVLRASFL-TRGAQIVSCG 597 (882)
Q Consensus 577 h~~~v~~~~~s-~~g~~l~s~~ 597 (882)
....+++++|. ++.+.|+..+
T Consensus 223 p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 223 PVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEe
Confidence 76789999995 5666665443
No 308
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=1.9e-06 Score=92.83 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=87.6
Q ss_pred ceEEccCCCEEEEEe-----CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 002782 24 PLVVSSDGSFIACAC-----GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (882)
Q Consensus 24 ~va~s~dg~~la~~~-----~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~ 98 (882)
-..|+|...++|+++ ++.|.||- .+|++.+...- .-.+++++|+|..-.||.|-.-|.+.+|...+.+.....
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence 356788888888775 45788874 57775543321 234578999999999999999999999998887777777
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (882)
Q Consensus 99 ~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~ 132 (882)
..|..+|..+.||++|..|.++..-|.|.+|...
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 7899999999999999999999999999999886
No 309
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=5.3e-07 Score=85.76 Aligned_cols=169 Identities=16% Similarity=0.191 Sum_probs=113.4
Q ss_pred eCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce---EEeeeecc-----cccEEEEEEccCCCcEEEEeeCCC
Q 002782 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---CVGVGTGH-----MGAVGAVAFSKKLQNFLVSGSSDH 464 (882)
Q Consensus 393 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~-----~~~v~~v~~s~~~~~~l~s~~~dg 464 (882)
..|.-.+.++. +..+... ++ ...|-.|.+|++.-.. .+.....| ...|++..|+|...+.+.-.+..|
T Consensus 169 NaH~yhiNSiS--~NsD~et-~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 169 NAHPYHINSIS--FNSDKET-LL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred ccceeEeeeee--ecCchhe-ee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence 45777788887 7677665 44 4457789999876421 12222333 346888899998877888889999
Q ss_pred eEEEEecCCCCCCC------CCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-eeEEEEeccc-
Q 002782 465 TIKVWSFDGLSDDA------EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHK- 536 (882)
Q Consensus 465 ~i~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~- 536 (882)
.|++-|++....-. +..........+......|..+.|+++|+++++-+. -+++|||.... .++.++.-|.
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHH
Confidence 99999998542100 000011112223334467889999999999998765 57999998754 5566665442
Q ss_pred -----------Cce---EEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782 537 -----------RGI---WSVEFSPVDQVVITASGDKTIKIWSIS 566 (882)
Q Consensus 537 -----------~~v---~~l~~s~~~~~l~s~~~d~~i~iwd~~ 566 (882)
..| ..+.||.|++.+++|+.....-+|-..
T Consensus 324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 223 357899999999999998888887643
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.71 E-value=5.3e-05 Score=76.38 Aligned_cols=205 Identities=20% Similarity=0.181 Sum_probs=134.8
Q ss_pred ceEEcc-CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCccEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 002782 24 PLVVSS-DGSFIACAC-GESINIVDLSNASIKSTIEGGSDTITALALS-PDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (882)
Q Consensus 24 ~va~s~-dg~~la~~~-~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~s-pd~~~las~~~dg~i~iwd~~~~~~~~~~~~ 100 (882)
.++|.+ +|.++++-. ++.|..|+..+++... +.... ...+++. +++.+ +++.. +.+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l-~v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRL-YVADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEE-EEEET-TCEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEE-EEEEc-CceEEEecCCCcEEEEeec
Confidence 467887 665555554 3489999998887543 32222 5677777 67554 44444 4456669999865544443
Q ss_pred -----CCCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCC
Q 002782 101 -----HDGPAIGMACHPSGGLLATAGAD--------RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167 (882)
Q Consensus 101 -----h~~~V~~l~fs~~~~~lasg~~d--------g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~d 167 (882)
.......++++|+|++.++.... |.|..++.. ++...... .-.....++|+|+++. ++++-+..
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~-lyv~ds~~ 155 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKT-LYVADSFN 155 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSE-EEEEETTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchh-eeeccccc
Confidence 34567889999999977775533 557777777 55444333 3566789999999763 45677788
Q ss_pred CcEEEEECCCCe-------EEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCc-ceeeEEEe
Q 002782 168 ATVRVWDLLAKK-------CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCA 237 (882)
Q Consensus 168 g~I~vwd~~~~~-------~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~ 237 (882)
+.|..+++.... .+..+....+..-.+++..+|+..++....+.|.+++.+ ++.+..+... ..+.+++|
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 899999985321 222233333458899999999988888889999999987 7666666555 45555555
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.70 E-value=1.4e-05 Score=80.44 Aligned_cols=222 Identities=13% Similarity=0.037 Sum_probs=138.5
Q ss_pred CCcEEEEeCCCceeeeeeeCC--CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccC
Q 002782 375 IEQVQVYDLSSMSCSYVLAGH--SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (882)
Q Consensus 375 ~~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~ 452 (882)
+|.|..+|..+++.+...... .....+. ..++++. +++++.++.+..||..+|+.+............. ...+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT---AVPDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET---EEEETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce---EEEeCCE-EEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecc
Confidence 478999999999888776531 1222211 2335555 6666899999999999999887766422111111 2222
Q ss_pred CCcEEEEeeCCCeEEEEecCCCCCCCCCccccc-chhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEE
Q 002782 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK-AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 531 (882)
Q Consensus 453 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~ 531 (882)
. .++.++.++.+..+|..++.. ... ......... .........++..++++..++.|..+|+.+|+.+..
T Consensus 77 -~-~v~v~~~~~~l~~~d~~tG~~------~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 77 -G-RVYVGTSDGSLYALDAKTGKV------LWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp -T-EEEEEETTSEEEEEETTTSCE------EEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred -c-ccccccceeeeEecccCCcce------eeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 2 466677888999999776531 111 000000001 112222223377888888899999999999999888
Q ss_pred EecccCc----------eEEEEEcCCCCEEEEeeCCCc-EEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCC
Q 002782 532 FRGHKRG----------IWSVEFSPVDQVVITASGDKT-IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600 (882)
Q Consensus 532 ~~~h~~~----------v~~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg 600 (882)
....... +..-....++ .++.++.++. +.+ |+.+++.+.... ...+.. ....++..|+.++.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTT
T ss_pred eecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCC
Confidence 8764422 1122222344 6777777775 555 999998765333 222222 2557788898888999
Q ss_pred eEEEEEcCCCeeEEE
Q 002782 601 LVKLWTVRTGECIAT 615 (882)
Q Consensus 601 ~i~iwd~~~~~~~~~ 615 (882)
.|..||+++|+.+.+
T Consensus 223 ~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 223 RLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEEECCCCCEEeE
Confidence 999999999998754
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.9e-07 Score=91.18 Aligned_cols=251 Identities=15% Similarity=0.088 Sum_probs=171.8
Q ss_pred cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCc---eeeeeeeCCCcceEEeeeeeecCCCEEEEEeec-CCeEEEEe
Q 002782 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK-DNSVRLWD 427 (882)
Q Consensus 352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-dg~i~iwd 427 (882)
|++.|..+... ..+++..++-||.++.|....- +.+..+..|...+.++. .+-++.. +.+.+. |..++++|
T Consensus 8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~--~S~dg~L-~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLA--VSYDGWL-FRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhh--cccccee-EeeccCcccceeEEE
Confidence 44445544433 5678999999999999986542 23344567888888886 5566654 888777 99999999
Q ss_pred CCCceEEeeeecccccEEEEEEccCC-C--cEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC
Q 002782 428 SESRCCVGVGTGHMGAVGAVAFSKKL-Q--NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (882)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~v~~s~~~-~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (882)
+.+-..+..+....-+-.+-.+...| . .+.++.-.++.+.++|-..... .......-|..+|.++.+.|
T Consensus 83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--------q~~~fkklH~sPV~~i~y~q 154 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC--------QDGYFKKLHFSPVKKIRYNQ 154 (558)
T ss_pred eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC--------ccceecccccCceEEEEeec
Confidence 88755443222111111111111112 1 1333445678888888554321 12333456889999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCC-c-----eeE---------EEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCc
Q 002782 505 NDSLVCTGSQDRTACVWRLPD-L-----VSV---------VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569 (882)
Q Consensus 505 ~~~~la~~s~dg~i~iwd~~~-~-----~~~---------~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~ 569 (882)
-+..+.+....|.|.-|..+. . ... ..+.-.+....++.|+|++..+.+-+.|..|++++..+|+
T Consensus 155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 999999999999999998873 1 111 1111235568899999999999999999999999999998
Q ss_pred eeeEee--------------------------------cCc-CCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEe
Q 002782 570 CLKTFE--------------------------------GHT-SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY 616 (882)
Q Consensus 570 ~~~~~~--------------------------------~h~-~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 616 (882)
.++.+. .|. ..-+.+.|...|++|+-++-=| |++.++.++++++.+
T Consensus 235 lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 235 LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 776543 111 1235678889999999887766 899999999988776
No 313
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.67 E-value=1.3e-07 Score=87.71 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=107.1
Q ss_pred eeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEeecCCCCEEEEEEcCCCCEEEEEe-----CCCcEE
Q 002782 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CLRSWKGHDGPAIGMACHPSGGLLATAG-----ADRKVL 127 (882)
Q Consensus 54 ~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~-~~~~~~~h~~~V~~l~fs~~~~~lasg~-----~dg~v~ 127 (882)
+.+..|.++-.+-+.+-.+..+++++.||.+.+++.+.-. ..+....-...-.+.++-..++++.+++ .-+..+
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence 3444444444444455557789999999999999976521 1111111111112223333455555543 124455
Q ss_pred EEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeE-EEEecCcccceEEEEEcc-CCCEEEE
Q 002782 128 VWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC-VATLDKHFSRVTSMAITS-DGSTLIS 205 (882)
Q Consensus 128 vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~-~~~l~~h~~~v~~l~~s~-~~~~l~s 205 (882)
.|+++-.+.+..-+.....|++++-+|.. ..++++|+.||.+-+||.+.... ...+..|..+++.+.|+| ++..|++
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft 241 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT 241 (319)
T ss_pred eecccccccccccccccccchhhhCCccc-ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE
Confidence 66665433222222223349999999974 46889999999999999988754 345688999999999998 5678999
Q ss_pred EeCCCeEEEEecCC
Q 002782 206 AGRDKVVNLWDLRD 219 (882)
Q Consensus 206 ~~~dg~i~vwd~~~ 219 (882)
++.||.+..||..+
T Consensus 242 ~sedGslw~wdas~ 255 (319)
T KOG4714|consen 242 CSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCcEEEEcCCC
Confidence 99999999999875
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.67 E-value=0.0002 Score=67.21 Aligned_cols=143 Identities=17% Similarity=0.062 Sum_probs=97.9
Q ss_pred EcCCC-CEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc
Q 002782 68 LSPDD-KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146 (882)
Q Consensus 68 ~spd~-~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~ 146 (882)
+.+|. .+++.|+..+.+.--|..+|+....-. -...|.+-+.- -|++++.|+..|.+.+-+..+|.....+......
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 33444 466778889999999999998776432 12333333222 4678999999999999999999887777643322
Q ss_pred EEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEE
Q 002782 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 214 (882)
Q Consensus 147 V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 214 (882)
=......+++ .++..|+.|+..+..|..+..++...+...+...+-+..|-...|+.+...|.+.-
T Consensus 96 k~~a~~d~~~--glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 96 KVRAQCDFDG--GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred ccceEEcCCC--ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEE
Confidence 2222334444 45999999999999999999999988766555556666664444555555554443
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.66 E-value=1.2e-05 Score=76.83 Aligned_cols=199 Identities=15% Similarity=0.162 Sum_probs=127.7
Q ss_pred EEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc
Q 002782 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL 526 (882)
Q Consensus 447 v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~ 526 (882)
++.+++|+ +++.-+|..|.+-.....-... .. ...+.......-.-++||||+.+||.+...|+|++||+...
T Consensus 3 ~~~~~~Gk--~lAi~qd~~iEiRsa~Ddf~si----~~-kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 3 LALSSDGK--LLAILQDQCIEIRSAKDDFSSI----IG-KCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eeecCCCc--EEEEEeccEEEEEeccCCchhe----eE-EEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc
Confidence 45566765 5556677777776554331100 00 11112222334568999999999999999999999998764
Q ss_pred eeEEEEec-------ccCceEEEEEcCCC------CEEEEeeCCCcEEEEecCCC-----ceeeEee---cCcCCEEEEE
Q 002782 527 VSVVTFRG-------HKRGIWSVEFSPVD------QVVITASGDKTIKIWSISDG-----SCLKTFE---GHTSSVLRAS 585 (882)
Q Consensus 527 ~~~~~~~~-------h~~~v~~l~~s~~~------~~l~s~~~d~~i~iwd~~~~-----~~~~~~~---~h~~~v~~~~ 585 (882)
... .+.+ -...|..+.|.+.. ..|++-..+|.++=|-+..+ +...+|. .+...|.++.
T Consensus 76 ~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 76 ELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred eeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 333 3322 12456677775422 24666667788887776432 3333433 2467899999
Q ss_pred EEeCCCEEEEeec----CC-------eEEEEEcCCCeeEEE--------------------e---------ccCCCceEE
Q 002782 586 FLTRGAQIVSCGA----DG-------LVKLWTVRTGECIAT--------------------Y---------DKHEDKIWA 625 (882)
Q Consensus 586 ~s~~g~~l~s~~~----dg-------~i~iwd~~~~~~~~~--------------------~---------~~h~~~v~~ 625 (882)
++|..+.|+.||. ++ -+..|.+-++.+-.. + ....+.|..
T Consensus 155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k 234 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK 234 (282)
T ss_pred EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence 9999888877764 11 366777643321100 0 113567899
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782 626 LAVGKKTEMFATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 626 l~~s~~~~~l~s~~~dg~i~iw~~~~~~ 653 (882)
|..||||+.||+...+|.|.+|++..=.
T Consensus 235 mSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 235 MSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 9999999999999999999999998643
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.65 E-value=4.9e-05 Score=75.30 Aligned_cols=242 Identities=12% Similarity=0.106 Sum_probs=154.1
Q ss_pred EEEEeCCCCcEEEEEEcCCc-EEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEe----ecCCeEEEEeCC-Cc
Q 002782 358 DLKFLGEEEQYLAVATNIEQ-VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG----SKDNSVRLWDSE-SR 431 (882)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~-~~ 431 (882)
.++..|.....++++-.-|. ..+||..++.....+....+.-..=.-+|+++|++++++- ...|.|-+||.. +-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 45556656677777776654 5678999988877666544443322233899999855552 346899999999 66
Q ss_pred eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCC--cEE
Q 002782 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLV 509 (882)
Q Consensus 432 ~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l 509 (882)
..+..+..|.-.-..+.+.|+++. |+.+. |-|. + +|+. ..|
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~t-LvVAN--GGI~-----T-----------------------------hpd~GR~kL 131 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGET-LVVAN--GGIE-----T-----------------------------HPDSGRAKL 131 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCE-EEEEc--CCCc-----c-----------------------------CcccCceec
Confidence 778888888777778889999874 33331 1110 0 0110 111
Q ss_pred EEEcCCCcEEEEeCCCceeEEE--E--ecccCceEEEEEcCCCCEEEEeeCCCc-------EEEEecCCCceeeEee---
Q 002782 510 CTGSQDRTACVWRLPDLVSVVT--F--RGHKRGIWSVEFSPVDQVVITASGDKT-------IKIWSISDGSCLKTFE--- 575 (882)
Q Consensus 510 a~~s~dg~i~iwd~~~~~~~~~--~--~~h~~~v~~l~~s~~~~~l~s~~~d~~-------i~iwd~~~~~~~~~~~--- 575 (882)
-..+.+.++...|..+++.+.. + .-|...|..+++.++|..++..-..|. |-+++- +..+..+.
T Consensus 132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~ 209 (305)
T PF07433_consen 132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPE 209 (305)
T ss_pred ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCCh
Confidence 2223344455556666665555 3 237778999999998877766544332 333332 22232222
Q ss_pred ----cCcCCEEEEEEEeCCCEEEEeec-CCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCC
Q 002782 576 ----GHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD 641 (882)
Q Consensus 576 ----~h~~~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 641 (882)
.-.+-+-+++++++|.+++..+- -|.+.+||..+++.+.... -..+..++..+++ +++|.+..
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCCc
Confidence 22356788999999988866555 5699999999999988765 3446777777777 66666554
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.65 E-value=5.9e-07 Score=97.81 Aligned_cols=180 Identities=21% Similarity=0.294 Sum_probs=139.0
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEE
Q 002782 31 GSFIACAC-GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA 109 (882)
Q Consensus 31 g~~la~~~-~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~ 109 (882)
+..+..|+ .+.+..+|+.+.+..+...-....|+-|.. +++++.+|...|+|.+-|..+.+.++++..|++.|..+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf- 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF- 223 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee-
Confidence 33444443 457899999999887776655555666654 58899999999999999999999999999999999775
Q ss_pred EcCCCCEEEEEeC---------CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEE---CCC
Q 002782 110 CHPSGGLLATAGA---------DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD---LLA 177 (882)
Q Consensus 110 fs~~~~~lasg~~---------dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd---~~~ 177 (882)
+-.|++|+++|. |..|+|||+...+.+.-+.-+-++ .-+.|+|.-. ..++.++..|...+-| +.+
T Consensus 224 -Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~-t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 -DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT-TRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred -eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc-ceEEEEecccceeeccccccCC
Confidence 556889999873 677999999888776666555554 5677888643 4588888899999988 333
Q ss_pred C-eEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEe
Q 002782 178 K-KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216 (882)
Q Consensus 178 ~-~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd 216 (882)
. .-+.-+....+.+.+++++++|+.++.+..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3 12233333445699999999999999999999999998
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.5e-07 Score=90.15 Aligned_cols=213 Identities=18% Similarity=0.112 Sum_probs=151.2
Q ss_pred cccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CCc
Q 002782 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRT 517 (882)
Q Consensus 439 ~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg~ 517 (882)
-|...|+.+..+.. .++.+++-||.++.|.-.... -......+..|-..|.+++.+-+|.++++.+. |..
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~is-------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs 77 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRIS-------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS 77 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCcc-------ceeehhhhHHHHHHHHhhhccccceeEeeccCcccc
Confidence 36777777776554 389999999999999754311 12244556778889999999999999999777 999
Q ss_pred EEEEeCCCceeEEEEecccCce-EEEEEcCCCC--EEE-EeeCCCcEEEEecCCCce--eeEeecCcCCEEEEEEEeCCC
Q 002782 518 ACVWRLPDLVSVVTFRGHKRGI-WSVEFSPVDQ--VVI-TASGDKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGA 591 (882)
Q Consensus 518 i~iwd~~~~~~~~~~~~h~~~v-~~l~~s~~~~--~l~-s~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~s~~g~ 591 (882)
++++|+.+...+..++-..-|= -+...+|.+. .|+ +.-.++.+.++|-....| ...-.-|..+|..+.+++-+.
T Consensus 78 ~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 78 VKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred eeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 9999998766554333211111 1112222211 233 334578899999654432 233344999999999999999
Q ss_pred EEEEeecCCeEEEEEcCC------CeeEEEe---------ccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHHHHH
Q 002782 592 QIVSCGADGLVKLWTVRT------GECIATY---------DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (882)
Q Consensus 592 ~l~s~~~dg~i~iwd~~~------~~~~~~~---------~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 656 (882)
.++|....|.|.-|.... ++....+ ........++.|+|+|..+.+-+.|..|+++...++....
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 999999999999998762 1111111 1233567889999999999999999999999999998766
Q ss_pred HHhh
Q 002782 657 EAFR 660 (882)
Q Consensus 657 ~~~~ 660 (882)
+..+
T Consensus 238 eiDE 241 (558)
T KOG0882|consen 238 EIDE 241 (558)
T ss_pred hhhc
Confidence 5543
No 319
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.62 E-value=0.00011 Score=73.61 Aligned_cols=173 Identities=18% Similarity=0.181 Sum_probs=110.2
Q ss_pred eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEeecCCC-------
Q 002782 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVWDLSTLKCLRSWKGHDG------- 103 (882)
Q Consensus 41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~----------~dg~i~iwd~~~~~~~~~~~~h~~------- 103 (882)
.|.++|..+++.+..+... -.-.+++||||+.+++++ +.-.|.+||..+..+...+.-..+
T Consensus 18 rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred eEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 7999999999988777642 334577899999988752 345799999999988876543322
Q ss_pred CEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC-CCeE
Q 002782 104 PAIGMACHPSGGLLATA--GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKC 180 (882)
Q Consensus 104 ~V~~l~fs~~~~~lasg--~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~-~~~~ 180 (882)
....++++.||+++... +....|.|-|+..++.+..+.- .+... .-|.++. -+.+-+.||.+.-..+. .|+.
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~---iyP~~~~-~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWL---IYPSGNR-GFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEE---EEEEETT-EEEEEETTSCEEEEEETSTSSE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEE---EEecCCC-ceEEEecCCceEEEEECCCCCE
Confidence 12346889999988875 4567899999999998877762 23222 2233322 28888999999999887 4554
Q ss_pred EEEe----cCcccce-EEEEEccCCCEEEEEeCCCeEEEEecCCc
Q 002782 181 VATL----DKHFSRV-TSMAITSDGSTLISAGRDKVVNLWDLRDY 220 (882)
Q Consensus 181 ~~~l----~~h~~~v-~~l~~s~~~~~l~s~~~dg~i~vwd~~~~ 220 (882)
..+. .....++ ..-.+...+..++-.+.+|.|+--++...
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~ 215 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD 215 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTS
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCC
Confidence 4221 1111111 12233444445555666777776666543
No 320
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.2e-06 Score=83.73 Aligned_cols=260 Identities=12% Similarity=0.122 Sum_probs=158.7
Q ss_pred EEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEE
Q 002782 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457 (882)
Q Consensus 378 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l 457 (882)
++..+..+.+....+.++...|..++ ++|..+-++..++.+..|.|.|+.+..++..+..+ ..+++++|.-+..+++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~Irdla--fSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLA--FSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhc--cCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence 67777777777778889999999998 88888866899999999999999999999988888 8999999999999999
Q ss_pred EEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEE------EEcCCCcEEEEEcCCCcEEEEeCCC--ceeE
Q 002782 458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL------AVAPNDSLVCTGSQDRTACVWRLPD--LVSV 529 (882)
Q Consensus 458 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~s~~~~~la~~s~dg~i~iwd~~~--~~~~ 529 (882)
..|..+|.|.+||++....... .........+|..+ ...+.|.+++..+.+ +..|.+.- +...
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~-------e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLM-------ELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLP 322 (463)
T ss_pred EEeccCceEEEEEccCCCchHh-------hhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCC
Confidence 9999999999999986532111 11111111223322 233445566655543 44555421 1122
Q ss_pred EEEe-cccCceEEEEEcCCCCE-EEEeeCCCc------EEE-EecCCCceeeE-eecCcCC----E--EE-EEEEeCCCE
Q 002782 530 VTFR-GHKRGIWSVEFSPVDQV-VITASGDKT------IKI-WSISDGSCLKT-FEGHTSS----V--LR-ASFLTRGAQ 592 (882)
Q Consensus 530 ~~~~-~h~~~v~~l~~s~~~~~-l~s~~~d~~------i~i-wd~~~~~~~~~-~~~h~~~----v--~~-~~~s~~g~~ 592 (882)
..++ +..+...+++..+..+. |++.-.+.+ |-. -|-.+|..+.. -.+|.+. + +. +.-.++.++
T Consensus 323 ~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~ 402 (463)
T KOG1645|consen 323 CVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNY 402 (463)
T ss_pred cccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccE
Confidence 2122 12445566666664444 333322211 111 11123322211 1112110 0 11 122345566
Q ss_pred EEEe-ecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcC-CCC-EEEEEeCCCCEEEEECCC
Q 002782 593 IVSC-GADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-KTE-MFATGGSDALVNLWHDST 651 (882)
Q Consensus 593 l~s~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~-~l~s~~~dg~i~iw~~~~ 651 (882)
++.. +..+.+.+||+.+++.++++.. ..+|..++... ++. +|++ -.|..++|++.+.
T Consensus 403 iv~~gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~-LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 403 IVVVGDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLAL-LTDDRVHIYKNES 462 (463)
T ss_pred EEEecCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhh-eecceEEEEecCC
Confidence 6544 4456899999999999999974 57888776533 343 5544 4456688887543
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.58 E-value=1.9e-07 Score=62.72 Aligned_cols=39 Identities=36% Similarity=0.795 Sum_probs=37.2
Q ss_pred CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (882)
Q Consensus 92 ~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd 130 (882)
|++++++.+|.++|.+|+|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=1.8e-07 Score=62.79 Aligned_cols=39 Identities=38% Similarity=0.627 Sum_probs=37.0
Q ss_pred CceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD 88 (882)
Q Consensus 50 ~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd 88 (882)
|++++++.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 323
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.56 E-value=1.6e-06 Score=80.73 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=102.4
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCcee-eeeeeC-CCcceEEeeeeeecCCCEEEEEee-----cCCeEEEEe
Q 002782 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAG-HSEIVLCLDTCALSSGKILIVTGS-----KDNSVRLWD 427 (882)
Q Consensus 355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~-----~dg~i~iwd 427 (882)
++-...++.-.++.++++..+|.+.+++.+.-.. ....+. |.+. .+.+....++. +.++. .-+..+.|+
T Consensus 90 ep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~---as~~~~~~~~~-i~s~~~g~~n~~d~~~a~~ 165 (319)
T KOG4714|consen 90 EIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS---ASRKICRHGNS-ILSGGCGNWNAQDNFYANT 165 (319)
T ss_pred CCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc---cccceeecccE-EecCCcceEeeccceeeec
Confidence 3333344444667889999999999998765211 111111 1111 11112233332 22221 123445566
Q ss_pred CCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC-CC
Q 002782 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-ND 506 (882)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~ 506 (882)
+...+...........|++++-+|..++++++|+.||.+.+||.+... .+...+.+|+.+|..+-|+| ++
T Consensus 166 ~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---------~p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 166 LDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---------MPVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred ccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc---------chHHHHHHhhhhhhheeccCCCc
Confidence 554333322222334599999999888899999999999999998652 25667789999999999999 67
Q ss_pred cEEEEEcCCCcEEEEeCCC
Q 002782 507 SLVCTGSQDRTACVWRLPD 525 (882)
Q Consensus 507 ~~la~~s~dg~i~iwd~~~ 525 (882)
..|++++.||.+.-||..+
T Consensus 237 ~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hheeEecCCCcEEEEcCCC
Confidence 8899999999999999764
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.54 E-value=0.00013 Score=73.13 Aligned_cols=193 Identities=15% Similarity=0.104 Sum_probs=102.4
Q ss_pred CcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCC-CceEEeee----eccccc-EEEEEE
Q 002782 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCCVGVG----TGHMGA-VGAVAF 449 (882)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~----~~~~~~-v~~v~~ 449 (882)
..|.|.|+..++....+.... |.....+.+ +. +.+-|.||++.-..+. .|+..... .....+ +..-++
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~-~~-F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~ 191 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPG----CWLIYPSGN-RG-FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY 191 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTS----EEEEEEEET-TE-EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE
T ss_pred CeEEEEECCCCceeeeecCCC----EEEEEecCC-Cc-eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce
Confidence 466777777777665554322 222112222 23 6677778887777766 34433211 111111 112223
Q ss_pred ccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhh--hhcCCCeeEEEEcCCCcEEEEEcC---CC-------c
Q 002782 450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQ---DR-------T 517 (882)
Q Consensus 450 s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~la~~s~---dg-------~ 517 (882)
...+. .++-.+.+|.|+--|+.........+.+....... .=..+.-.-+++++..+.|.+.-. ++ .
T Consensus 192 ~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 192 SRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp ETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred ECCCC-eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence 33333 34446777877777776543111111111000000 001123445777775555444211 11 4
Q ss_pred EEEEeCCCceeEEEEecccCceEEEEEcCCCC-EEEEe-eCCCcEEEEecCCCceeeEeec
Q 002782 518 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITA-SGDKTIKIWSISDGSCLKTFEG 576 (882)
Q Consensus 518 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~-~~d~~i~iwd~~~~~~~~~~~~ 576 (882)
|.++|+.+++.+..+.. ..++.+|..+.+.+ +|++. ..++.+.+||..+|+.++++.+
T Consensus 271 VWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 88999999999998884 34688999999877 55544 4579999999999999998874
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.1e-05 Score=80.19 Aligned_cols=94 Identities=16% Similarity=0.270 Sum_probs=80.8
Q ss_pred EEEEECCCCeeEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEE
Q 002782 84 IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLF 162 (882)
Q Consensus 84 i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~-~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~ 162 (882)
+++.+-.+.+...-+.+|...|..++|||... ++..++.+..|+|.|+++..++..+..| ..+++++|.-|. ..+++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-RHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-cceeE
Confidence 66666666666666777889999999999877 7888999999999999999999888877 889999999885 57899
Q ss_pred EEeCCCcEEEEECCCCe
Q 002782 163 SGSDDATVRVWDLLAKK 179 (882)
Q Consensus 163 sgs~dg~I~vwd~~~~~ 179 (882)
.|...|.|.|||+...+
T Consensus 253 aGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EeccCceEEEEEccCCC
Confidence 99999999999997654
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.53 E-value=0.0021 Score=68.42 Aligned_cols=179 Identities=12% Similarity=0.122 Sum_probs=112.5
Q ss_pred cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782 534 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613 (882)
Q Consensus 534 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~ 613 (882)
.....|.+.+++|+...|+.|+.||+|.+||...+.... ....-.++.++|+|+|..+++|+..|.+.+||+.-+..-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 367889999999999999999999999999987664332 234456778999999999999999999999998633211
Q ss_pred E----------------EeccCCCceEEEEEcCCCC-------------EEEEEeCCCCEEEEECCCHHHHHHHhhhhHH
Q 002782 614 A----------------TYDKHEDKIWALAVGKKTE-------------MFATGGSDALVNLWHDSTAAEREEAFRKEEE 664 (882)
Q Consensus 614 ~----------------~~~~h~~~v~~l~~s~~~~-------------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 664 (882)
. .+..+......+.|++... .|+..-..|-+.+-.+..|-...-..-.
T Consensus 335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~~G~~~~G~l~~--- 411 (545)
T PF11768_consen 335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFKLGVFTRGDLGL--- 411 (545)
T ss_pred eeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEeeccccCCcccH---
Confidence 1 1113445566777774321 3333444444555443333211110000
Q ss_pred HHhccchHHHhhhccchHHHHHHHhhcCCc---hhHH----HHHHHHHh---cchhHHHHHHHHhcc
Q 002782 665 AVLRGQELENAVLDADYTKAIQVAFELRRP---HKLF----ELFASVCR---KREAELQIEKALHAL 721 (882)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~---~~~~----~~~~~~~~---~~~~~~~l~~~~~~l 721 (882)
.+=..++++.....+|+.+...++-- +..+ .+...+++ ..+.+..++.+|..+
T Consensus 412 ----~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF 474 (545)
T PF11768_consen 412 ----VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSF 474 (545)
T ss_pred ----HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhc
Confidence 00112567777888999988888754 2222 33333433 334566777777554
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=7.6e-08 Score=103.73 Aligned_cols=219 Identities=14% Similarity=0.245 Sum_probs=159.3
Q ss_pred eeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCC-eEE
Q 002782 389 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIK 467 (882)
Q Consensus 389 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg-~i~ 467 (882)
...+..|....+|++ ++.+.+. ++.|+-.|.|++++..+|.......+|.++|+.+.-+.+|...|.+++... -..
T Consensus 1094 w~~frd~~~~fTc~a--fs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIA--FSGGTNH-LAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred chhhhccccceeeEE--eecCCce-EEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 345667888888988 7777776 999999999999999999999999999999999999999886666655554 567
Q ss_pred EEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEe----cccCceEEEE
Q 002782 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR----GHKRGIWSVE 543 (882)
Q Consensus 468 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~ 543 (882)
+|++..... ....+ ..-.++.|+..-..-+.|+....+.+||+.++.++.++- +....-.+..
T Consensus 1171 LW~~~s~~~---------~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1171 LWDASSTGG---------PRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred HhccccccC---------ccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 898764311 11111 234578888766555667666789999999987766632 2233347889
Q ss_pred EcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCce
Q 002782 544 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKI 623 (882)
Q Consensus 544 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v 623 (882)
|+|++.+++ .|| .+||++..+.++.|...... ..-.|+|.|..++.-+ -|||+++.+.+.....- .-
T Consensus 1238 FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L--dq 1304 (1516)
T KOG1832|consen 1238 FSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL--DQ 1304 (1516)
T ss_pred cCCCcceEe---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec-----hhhhhHHHHHHhcCccc--cc
Confidence 999998887 344 58999988878777644321 2246899999988765 48999999888766532 23
Q ss_pred EEEEEcCCCCEEE
Q 002782 624 WALAVGKKTEMFA 636 (882)
Q Consensus 624 ~~l~~s~~~~~l~ 636 (882)
..+.|...|..+.
T Consensus 1305 c~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMY 1317 (1516)
T ss_pred eEEEeccCccchh
Confidence 5567777666443
No 328
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=1.4e-07 Score=101.87 Aligned_cols=264 Identities=18% Similarity=0.210 Sum_probs=173.7
Q ss_pred eeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCC-eEE
Q 002782 346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN-SVR 424 (882)
Q Consensus 346 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~ 424 (882)
.+.+..++...++++|+. +.+++++|+..|.|++|++.+|.......+|..+++-+. .+.+|..++.+++... -..
T Consensus 1094 w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~ve--Ps~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVE--PSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred chhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCcccccccccccccccccc--ccCCcceeeeeccccCchHH
Confidence 345566777788999987 788999999999999999999999999999999999998 8888988666665554 567
Q ss_pred EEeCCC-ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEc
Q 002782 425 LWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (882)
Q Consensus 425 iwd~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (882)
+|++.+ +.....+. .-.++.|+...+ +-+.|.......+||+.+...-.. ...-..+....-++..|+
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~t------ylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQT------YLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHH-HHHhcccccceEEEecccCcHHHH------hcCcchhhhhhccccccC
Confidence 898865 22232222 345677876644 344555556788999987631100 000011112223788999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEE
Q 002782 504 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 583 (882)
Q Consensus 504 ~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 583 (882)
|+.+++.- || .+||++..+.+..|...+ --..-.|+|.|..++.-+. |||+++.+.+++...-. -..
T Consensus 1240 P~D~LIln---dG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~ 1306 (1516)
T KOG1832|consen 1240 PCDTLILN---DG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCA 1306 (1516)
T ss_pred CCcceEee---Cc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceE
Confidence 99988863 45 589998887776665433 1223468999998888765 89999998877654321 234
Q ss_pred EEEEeCCCEEEEeec------C-----------CeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEE
Q 002782 584 ASFLTRGAQIVSCGA------D-----------GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFAT 637 (882)
Q Consensus 584 ~~~s~~g~~l~s~~~------d-----------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 637 (882)
+.|...|..+...-. | ...+-++..+...+.++.. ...|..++-+|...+|..
T Consensus 1307 VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~v 1376 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGV 1376 (1516)
T ss_pred EEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEE
Confidence 667766665433220 0 1244455555556666653 345556666666665554
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.47 E-value=0.00013 Score=79.30 Aligned_cols=207 Identities=11% Similarity=-0.006 Sum_probs=127.5
Q ss_pred ecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEee--CC-CeEEEEecCCCCCCCCCccc
Q 002782 407 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SD-HTIKVWSFDGLSDDAEQPMN 483 (882)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~--~d-g~i~~wd~~~~~~~~~~~~~ 483 (882)
.++|+.+....-..+.+.+.|..+.+...+..-.. ....+.+++++...++++. +. +++..-+....
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~--------- 270 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER--------- 270 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccC---------
Confidence 34565533444445677778888776665544322 3456788888884444431 21 22222221110
Q ss_pred ccchhhhhhcCCCeeEE--------EEcCCCcEEEEEcCCCcEEEEeCCC----c-eeEEEEecccCceEEEEEcCCCCE
Q 002782 484 LKAKAVVAAHGKDINSL--------AVAPNDSLVCTGSQDRTACVWRLPD----L-VSVVTFRGHKRGIWSVEFSPVDQV 550 (882)
Q Consensus 484 ~~~~~~~~~~~~~i~~~--------~~s~~~~~la~~s~dg~i~iwd~~~----~-~~~~~~~~h~~~v~~l~~s~~~~~ 550 (882)
. ..+ ++.++|++...+ ++.|.+.|..+ + ..+..+. -....+.+.++|||++
T Consensus 271 -----------d--~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGky 334 (635)
T PRK02888 271 -----------D--WVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKY 334 (635)
T ss_pred -----------c--eEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCE
Confidence 0 112 334578776663 57899999988 3 4444444 5667889999999998
Q ss_pred EEEeeC-CCcEEEEecCCCce------------eeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCC--------
Q 002782 551 VITASG-DKTIKIWSISDGSC------------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-------- 609 (882)
Q Consensus 551 l~s~~~-d~~i~iwd~~~~~~------------~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~-------- 609 (882)
+++++. +.+|.|.|+.+.+. +...+- .......+|.++|+...|...|..|-.|++.+
T Consensus 335 lyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~ 413 (635)
T PRK02888 335 FIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGE 413 (635)
T ss_pred EEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccc
Confidence 877654 89999999987542 333332 23345688999998888888899999999876
Q ss_pred --CeeEEEeccCCCceEE-----EEEcCCCCEEEEEeC
Q 002782 610 --GECIATYDKHEDKIWA-----LAVGKKTEMFATGGS 640 (882)
Q Consensus 610 --~~~~~~~~~h~~~v~~-----l~~s~~~~~l~s~~~ 640 (882)
...+..++-|-.+-.- =.-.|||++|++...
T Consensus 414 ~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 414 KVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred cCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 3344545444322211 123678888887543
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=1.5e-05 Score=85.06 Aligned_cols=195 Identities=14% Similarity=0.141 Sum_probs=123.2
Q ss_pred EEccCCCEEEEEeCC-eEEEEEcCCCceee-eecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-----EEEe
Q 002782 26 VVSSDGSFIACACGE-SINIVDLSNASIKS-TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC-----LRSW 98 (882)
Q Consensus 26 a~s~dg~~la~~~~~-~I~i~d~~~~~~~~-~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~-----~~~~ 98 (882)
+++..+++++.|... .+.+|+-.+|+... ...+-...++...+|++..++|.|+..|.|.++-+..+.+ +...
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 466788999998875 89999977776433 3334556778888999999999999999999998876422 1122
Q ss_pred -ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEE
Q 002782 99 -KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173 (882)
Q Consensus 99 -~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~----~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vw 173 (882)
+.|...|++++|++++..+.+|...|.|..-.+.+. ...+.+..-.+.|..+.... ..+|++.... ..+.
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q---~~LLVStl~r--~~Lc 194 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ---SYLLVSTLTR--CILC 194 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc---ceehHhhhhh--hhee
Confidence 237889999999999999999999999998888762 11122333456666666543 2334433322 2344
Q ss_pred ECCCCeEEEEecCcccc--eEEEEEccC----CCEEEEEeCCCeEEEEecCC-ceeeeee
Q 002782 174 DLLAKKCVATLDKHFSR--VTSMAITSD----GSTLISAGRDKVVNLWDLRD-YSCKLTV 226 (882)
Q Consensus 174 d~~~~~~~~~l~~h~~~--v~~l~~s~~----~~~l~s~~~dg~i~vwd~~~-~~~~~~~ 226 (882)
+.+.++..+.-+..+.. -.+.+|-|. .+-.+.+++-| .|+|..+- +...++.
T Consensus 195 ~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Th 253 (726)
T KOG3621|consen 195 QTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTH 253 (726)
T ss_pred ecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEee
Confidence 44433311111111111 334455553 44556666666 78898763 3344443
No 331
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.44 E-value=0.00044 Score=73.63 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=50.4
Q ss_pred cCCCCEEEEE---------eCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 002782 69 SPDDKLLFSS---------GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC 136 (882)
Q Consensus 69 spd~~~las~---------~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~ 136 (882)
|||+++++.. +..+.+.+||+++++....... ...+....|||+|+++|... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 7899988874 2346899999999876655443 67889999999999999986 58899999877743
No 332
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=3.3e-06 Score=92.14 Aligned_cols=181 Identities=14% Similarity=0.202 Sum_probs=132.6
Q ss_pred EEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecc
Q 002782 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH 535 (882)
Q Consensus 456 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h 535 (882)
.++-|+-...+..+|+.+..... .. +-+.--+.....+++.+.+|...|+|.+-|..+.+.+.++..|
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r----------~~--~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH 216 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETR----------TT--NVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAH 216 (1118)
T ss_pred ceeecchhhheeeeecccceeee----------ee--eccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeecc
Confidence 46667666677778887653211 11 1111113344467899999999999999999999999999999
Q ss_pred cCceEEEEEcCCCCEEEEeeC---------CCcEEEEecCCCceeeEeecCcCCEEEEEEEeC-CCEEEEeecCCeEEEE
Q 002782 536 KRGIWSVEFSPVDQVVITASG---------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR-GAQIVSCGADGLVKLW 605 (882)
Q Consensus 536 ~~~v~~l~~s~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~iw 605 (882)
.+.|.++... |+.|++++. |..|+|||++.-+.+..+.-+.++ .-+.|.|. ...++.++..|...+-
T Consensus 217 s~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 217 SGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence 9999887765 899999875 556899999887776666545444 34677775 4578888888999998
Q ss_pred E---cCCC-eeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEECCC
Q 002782 606 T---VRTG-ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (882)
Q Consensus 606 d---~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~ 651 (882)
| +.+. .-+..+..-...+.++.+|++++.|+.|..+|.|.+|....
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 8 3332 12233333345599999999999999999999999998544
No 333
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.41 E-value=0.00021 Score=81.38 Aligned_cols=243 Identities=12% Similarity=0.111 Sum_probs=139.8
Q ss_pred cCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCc
Q 002782 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (882)
Q Consensus 352 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 431 (882)
..+.|.++.|.. +.+.+.+++..|.|.+.|.++.... ....-...|.++. |+|++.. ++..+..+++.+... +.
T Consensus 67 gd~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aas--wS~Dee~-l~liT~~~tll~mT~-~f 140 (1265)
T KOG1920|consen 67 GDDEIVSVQFLA-DTNSICVITALGDIILVDPETLELE-IVGNVDNGISAAS--WSPDEEL-LALITGRQTLLFMTK-DF 140 (1265)
T ss_pred CCcceEEEEEec-ccceEEEEecCCcEEEEccccccee-eeeeccCceEEEe--ecCCCcE-EEEEeCCcEEEEEec-cc
Confidence 346899999987 5666777788899999988776543 2233455677777 8999987 777777777765432 22
Q ss_pred eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCc-ccccchhhhhhcCCCeeEEEEcCCCcEEE
Q 002782 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (882)
Q Consensus 432 ~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~la 510 (882)
.++.....+. .-.+.+. .+.++....=.-+.-..+......+ ...+..... .....=+++.|--||.++|
T Consensus 141 ~~i~E~~L~~------d~~~~sk--~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fA 211 (1265)
T KOG1920|consen 141 EPIAEKPLDA------DDERKSK--FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFA 211 (1265)
T ss_pred cchhcccccc------ccccccc--cceecccccceeeecchhhhcccccccccccccch-hhccCCceEEEccCCcEEE
Confidence 2221111100 0011111 2333332211111111110000000 000000000 1122236799999999999
Q ss_pred E-----EcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEee---CCCcEEEEecCCCceeeE----eecCc
Q 002782 511 T-----GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISDGSCLKT----FEGHT 578 (882)
Q Consensus 511 ~-----~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~----~~~h~ 578 (882)
+ ....+.|++||.+ +..-.+-....+.-.+++|-|.|..+++-. .|+.|.+|.- +|-.... +....
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccc
Confidence 8 3333789999977 433333233334456899999999998863 4567999984 4433332 33334
Q ss_pred CCEEEEEEEeCCCEEEE---eecCCeEEEEEcCCCe
Q 002782 579 SSVLRASFLTRGAQIVS---CGADGLVKLWTVRTGE 611 (882)
Q Consensus 579 ~~v~~~~~s~~g~~l~s---~~~dg~i~iwd~~~~~ 611 (882)
..+..++|+.++..|+. ......|++|-+.+..
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 45899999999999987 4444569999987764
No 334
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.33 E-value=0.011 Score=66.39 Aligned_cols=426 Identities=13% Similarity=0.131 Sum_probs=215.3
Q ss_pred eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee--cCCCCEEEEEEcCCC----
Q 002782 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK--GHDGPAIGMACHPSG---- 114 (882)
Q Consensus 41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~--~h~~~V~~l~fs~~~---- 114 (882)
.|++++-. ..+..+.. .+.++..+.+.+...++.++.++.+...++..+. ++... .-...|.|+.++|-|
T Consensus 471 ~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~ 546 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPN 546 (1096)
T ss_pred cEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCC
Confidence 45555533 22333432 3456777777777788888887888888877666 22222 234789999999842
Q ss_pred --CEEEEEeCCCcEEEEE-CCCCeEEEEe-ecC---CCcEEEEEEecCCCccEEEEEeCCCcEEEEEC--CCCeEEEEec
Q 002782 115 --GLLATAGADRKVLVWD-VDGGFCTHYF-KGH---KGVVSSILFHPDTDKSLLFSGSDDATVRVWDL--LAKKCVATLD 185 (882)
Q Consensus 115 --~~lasg~~dg~v~vwd-~~~~~~~~~~-~~h---~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~--~~~~~~~~l~ 185 (882)
+++|.|..+..+.+-- ..+...+... .+- ...|.-.+|-.| ..+|.++..||.+.-+.+ .++..-..-+
T Consensus 547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d--~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk 624 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD--IHYLLVALGDGALLYFVLDINTGQLSDRKK 624 (1096)
T ss_pred cceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc--ceEEEEEcCCceEEEEEEEcccceEccccc
Confidence 2688887665544332 2333322222 111 122333444333 566999999999876654 4443322221
Q ss_pred C--cccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCcccccccchhhhhhcccccc
Q 002782 186 K--HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 263 (882)
Q Consensus 186 ~--h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (882)
. ...++.--.|+..++.-+.+..|+-..+|.....-....+.. ..+..++...+..
T Consensus 625 ~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~-kev~~~c~f~s~a--------------------- 682 (1096)
T KOG1897|consen 625 VTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSL-KEVNHMCPFNSDA--------------------- 682 (1096)
T ss_pred cccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccch-HHhhhhccccccc---------------------
Confidence 1 233566666776666656666666666665433222211111 1111122111111
Q ss_pred ceEEEEEcCCCeEEEEECCCc-eeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEe-----------CCe---E
Q 002782 264 EIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA-----------DQQ---L 328 (882)
Q Consensus 264 ~~~~~~~~~~g~v~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~---i 328 (882)
..-.+.....+.+++..++.- ++..+..+ .. ......++.+....+.+.+. ... +
T Consensus 683 ~~d~l~~~~~~~l~i~tid~iqkl~irtvp-------l~---~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l 752 (1096)
T KOG1897|consen 683 YPDSLASANGGALTIGTIDEIQKLHIRTVP-------LG---ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFL 752 (1096)
T ss_pred CCceEEEecCCceEEEEecchhhcceeeec-------CC---CChhheEecccceEEEEEecccccchhhcCCcceEEEE
Confidence 112233334445555544432 11110000 00 11111111111111111100 001 1
Q ss_pred EEEEecccccccceeeeeeeecc--cCCceEEEEEeCCCCcEEEEEEc----------CCcEEEEeCCCceeeeeeeCC-
Q 002782 329 LLYTTVEVPEKKMELILSKRLVG--YNEEILDLKFLGEEEQYLAVATN----------IEQVQVYDLSSMSCSYVLAGH- 395 (882)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~----------~~~i~i~d~~~~~~~~~~~~~- 395 (882)
.+++..+ .+......+.. .-..+.++.|..+.+.++++|+. .|.|.+|.............+
T Consensus 753 ~vlD~nT-----f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~ 827 (1096)
T KOG1897|consen 753 RVLDQNT-----FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV 827 (1096)
T ss_pred EEecCCc-----eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee
Confidence 1111111 01111111110 11234555577766888888864 467777776663333333222
Q ss_pred -CcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCC
Q 002782 396 -SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (882)
Q Consensus 396 -~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~ 474 (882)
.+.+.++. .-+|+. +| +-+..|++|++.+++.++.-..+..++..+...-.+. .++.|.--+.+.+......
T Consensus 828 v~Gav~aL~---~fngkl-lA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 828 VKGAVYALV---EFNGKL-LA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred eccceeehh---hhCCeE-EE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEecc
Confidence 23444442 233433 33 3466899999999988888888889999999888776 7889988888888766543
Q ss_pred CCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC
Q 002782 475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (882)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~ 524 (882)
+... .......+....+++.+-.+. .++.+..+|.+.+-..+
T Consensus 901 eg~f-------~evArD~~p~Wmtaveil~~d-~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 901 EGNF-------EEVARDYNPNWMTAVEILDDD-TYLGAENSGNLFTVRKD 942 (1096)
T ss_pred CCce-------EEeehhhCccceeeEEEecCc-eEEeecccccEEEEEec
Confidence 2111 111223355667777776554 44455667777776554
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=1.7e-05 Score=85.91 Aligned_cols=180 Identities=14% Similarity=0.178 Sum_probs=126.4
Q ss_pred ccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEE
Q 002782 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521 (882)
Q Consensus 442 ~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iw 521 (882)
..++|++++.. +++-|+.+|.|.+++.+.. . .....|... ..+|.++++++.||+|.|.
T Consensus 40 D~is~~av~~~---~~~~GtH~g~v~~~~~~~~-----------~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 40 DAISCCAVHDK---FFALGTHRGAVYLTTCQGN-----------P-KTNFDHSSS------ILEGEYVASCSDDGKVVIG 98 (846)
T ss_pred hHHHHHHhhcc---eeeeccccceEEEEecCCc-----------c-ccccccccc------ccCCceEEEecCCCcEEEe
Confidence 45666676643 8999999999999997653 1 122223222 5689999999999999999
Q ss_pred eCCCceeEEEEecccCceEEEEEcCC-----CCEEEEeeCCCcEEEEecCC---CceeeEeecCcCCEEEEEEEeCCCEE
Q 002782 522 RLPDLVSVVTFRGHKRGIWSVEFSPV-----DQVVITASGDKTIKIWSISD---GSCLKTFEGHTSSVLRASFLTRGAQI 593 (882)
Q Consensus 522 d~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~h~~~v~~~~~s~~g~~l 593 (882)
.+-+.+...++. ...++.+++++|+ .+.+++|+.-| +.++.-.= ...+ .+..-.++|.++.|. |+++
T Consensus 99 sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lI 173 (846)
T KOG2066|consen 99 SLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLI 173 (846)
T ss_pred eccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEE
Confidence 998888777666 5678999999998 56889998888 77776321 1111 344456889988885 7788
Q ss_pred EEeecCCeEEEEEcCCCeeEEEeccCCCce------EEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782 594 VSCGADGLVKLWTVRTGECIATYDKHEDKI------WALAVGKKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 594 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v------~~l~~s~~~~~l~s~~~dg~i~iw~~~ 650 (882)
+-++.+| |+|||+.+++.+..++.....+ ..+.|.++.++++ |=. .+|.|..+.
T Consensus 174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWG-DSVKICSIK 233 (846)
T ss_pred EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecC-CeEEEEEEe
Confidence 8888777 9999999998888776433332 3466766655443 322 235555544
No 336
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.29 E-value=0.0014 Score=72.99 Aligned_cols=190 Identities=14% Similarity=0.147 Sum_probs=107.9
Q ss_pred CCCEEEEEeCCeEEEEEcCCCceeeeecCCCc------cEE--EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC
Q 002782 30 DGSFIACACGESINIVDLSNASIKSTIEGGSD------TIT--ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101 (882)
Q Consensus 30 dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~------~I~--~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h 101 (882)
+++.++....+.|.-+|..+|+.+-....... .+. .+++. ++..++.++.++.|+-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 55544444456899999999998766543222 110 01111 2267888888999999999999998877643
Q ss_pred CCC-----EE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCeEEEEeecCCCc--------------------
Q 002782 102 DGP-----AI-GMACHPSGGLLATAG---------ADRKVLVWDVDGGFCTHYFKGHKGV-------------------- 146 (882)
Q Consensus 102 ~~~-----V~-~l~fs~~~~~lasg~---------~dg~v~vwd~~~~~~~~~~~~h~~~-------------------- 146 (882)
... +. ...+. +..++.++ .++.+...|..+|+.+..+......
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 221 11 11222 24455553 3678999999999988776542110
Q ss_pred EE-EEEEecCCCccEEEEEeCCC------------------cEEEEECCCCeEEEEecCcccceEE------EEEc----
Q 002782 147 VS-SILFHPDTDKSLLFSGSDDA------------------TVRVWDLLAKKCVATLDKHFSRVTS------MAIT---- 197 (882)
Q Consensus 147 V~-~l~f~~~~~~~~l~sgs~dg------------------~I~vwd~~~~~~~~~l~~h~~~v~~------l~~s---- 197 (882)
|. ..++.+.+ ..++.++.++ .|.-.|..+|+.+-..+.-...... ..+.
T Consensus 218 vw~~pa~d~~~--g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 218 SWASPTYDPKT--NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred ccCCeeEeCCC--CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 11 12233322 3366676554 6888898888887665321111110 0110
Q ss_pred cCCC---EEEEEeCCCeEEEEecCCceeee
Q 002782 198 SDGS---TLISAGRDKVVNLWDLRDYSCKL 224 (882)
Q Consensus 198 ~~~~---~l~s~~~dg~i~vwd~~~~~~~~ 224 (882)
-++. .++.++.+|.+...|..+++.+.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 1222 45555666666666666665443
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=1.4e-05 Score=86.52 Aligned_cols=156 Identities=19% Similarity=0.215 Sum_probs=117.2
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 002782 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY 139 (882)
Q Consensus 60 ~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~ 139 (882)
.+.++|++++ +++++-|+.+|.|++.+... .+ .+...|+.. +.+|.+++||+.||.|.|-.+.+....+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4577888888 78899999999999999753 33 443445443 77899999999999999999988877666
Q ss_pred eecCCCcEEEEEEecC---CCccEEEEEeCCCcEEEEECC--CCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEE
Q 002782 140 FKGHKGVVSSILFHPD---TDKSLLFSGSDDATVRVWDLL--AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 214 (882)
Q Consensus 140 ~~~h~~~V~~l~f~~~---~~~~~l~sgs~dg~I~vwd~~--~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~v 214 (882)
+. ...++.+++++|+ .....+++|+.-| +.++.-. ..+.-..+....++|.++.|. |.+++-+..+| |++
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 55 4578999999998 1223489999988 7776421 222222455667899999995 66888887777 999
Q ss_pred EecCCceeeeeecCcc
Q 002782 215 WDLRDYSCKLTVPTYE 230 (882)
Q Consensus 215 wd~~~~~~~~~~~~~~ 230 (882)
||..+.+.+..++.+.
T Consensus 184 yd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPS 199 (846)
T ss_pred EeccccceeeccCCCC
Confidence 9999988877766544
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00012 Score=80.04 Aligned_cols=206 Identities=16% Similarity=0.267 Sum_probs=140.4
Q ss_pred ccC-CceEEccCCCEEEEEeCC-eEEEEEcCCCceeeeecCCCcc-EEEEEEcCCCCEEEEEeCCC-----cEEEEECCC
Q 002782 20 YGG-GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDT-ITALALSPDDKLLFSSGHSR-----EIRVWDLST 91 (882)
Q Consensus 20 y~g-~~va~s~dg~~la~~~~~-~I~i~d~~~~~~~~~l~~~~~~-I~~l~~spd~~~las~~~dg-----~i~iwd~~~ 91 (882)
+.| ..-++++.+..++.|... .|.+++- .-+.++.++.+... |+.+-...+..+|++.+.|+ .|+|||++.
T Consensus 23 ~~G~~isc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 23 FVGNAISCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred CCCCceeEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 444 456678888888888765 6777662 23344777777776 55554444557888776654 599999863
Q ss_pred C------eeEE--Eeec-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC----CCCeEEEEeecCCCcEEEEEEec
Q 002782 92 L------KCLR--SWKG-----HDGPAIGMACHPSGGLLATAGADRKVLVWDV----DGGFCTHYFKGHKGVVSSILFHP 154 (882)
Q Consensus 92 ~------~~~~--~~~~-----h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~----~~~~~~~~~~~h~~~V~~l~f~~ 154 (882)
. .++. .+.+ ...|+.+++.+.+-+.+|.|-.+|.|..+.- +.|...........+|+.++|..
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 2 3341 2222 3568999999999999999999999988843 22333333334578999999998
Q ss_pred CCCccEEEEEeCCCcEEEEECCCCeE-EEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCc
Q 002782 155 DTDKSLLFSGSDDATVRVWDLLAKKC-VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY 229 (882)
Q Consensus 155 ~~~~~~l~sgs~dg~I~vwd~~~~~~-~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 229 (882)
++... +++++. ..|.+|.+....+ ...+..|...+.|-.+++....+++++. .-+.+|+.+......+++..
T Consensus 182 d~~s~-lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g 254 (933)
T KOG2114|consen 182 DGKSV-LFVATT-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVG 254 (933)
T ss_pred CCcee-EEEEec-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCC
Confidence 87653 333333 4599999985542 4457778888999999877665666664 45999999877766666643
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.25 E-value=0.0017 Score=72.35 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=72.7
Q ss_pred EEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEe------------------eCCCcEEEEecCCCc
Q 002782 508 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA------------------SGDKTIKIWSISDGS 569 (882)
Q Consensus 508 ~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~------------------~~d~~i~iwd~~~~~ 569 (882)
.+++++.+|.+...|..+++.+-..... ...++.+| ..++.+ ..+|.+.-.|+.+|+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 6788889999999999999887765421 11233344 223322 246788889999998
Q ss_pred eeeEeecCc--------CCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEecc
Q 002782 570 CLKTFEGHT--------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK 618 (882)
Q Consensus 570 ~~~~~~~h~--------~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 618 (882)
.+.+..... .+...-.....+..|+.++.||.|+.+|.++|+.+.+++.
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 887765321 1111111223567899999999999999999999988764
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.25 E-value=0.0021 Score=68.29 Aligned_cols=271 Identities=12% Similarity=0.083 Sum_probs=126.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCC------
Q 002782 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA------ 177 (882)
Q Consensus 104 ~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~------ 177 (882)
.|+.+.|.++..-|++|...|.|.||.+...+... ..-..+-....|.+-+ ..++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~l~di~~r~~~~~ 72 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS--------LNNSPGKLTDISDRAPPSL 72 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S----------GGGSS-SEEE-GGG--TT-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc--------ccCCCcceEEehhhCCccc
Confidence 58899999999999999999999999886543221 0000011111111100 0001111222211
Q ss_pred ---CeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcc---------eeeEEEecCCCCCcc
Q 002782 178 ---KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE---------MVEAVCAIPPGSAFD 245 (882)
Q Consensus 178 ---~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 245 (882)
-.+...+....++|++++.|.-| +++.|..+|.+.+.|++....+......+ .+..+.|.-
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v------ 145 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV------ 145 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE------
T ss_pred ccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE------
Confidence 12344455668899999998555 99999999999999999887776644333 011111100
Q ss_pred cccccchhhhhhccccccceEEEEEcCCCeEEEEECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeC
Q 002782 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (882)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (882)
.....+...... +++++..
T Consensus 146 ---------m~~~~D~ySSi~----------------------------------------------------L~vGTn~ 164 (395)
T PF08596_consen 146 ---------MTLGGDGYSSIC----------------------------------------------------LLVGTNS 164 (395)
T ss_dssp ---------EE-TTSSSEEEE----------------------------------------------------EEEEETT
T ss_pred ---------EecCCCcccceE----------------------------------------------------EEEEeCC
Confidence 000000111223 4555555
Q ss_pred CeEEEEEecccccccceeeeeeeecccCCceEEEEEeC-C-------------------CCcEEEEEEcCCcEEEEeCCC
Q 002782 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG-E-------------------EEQYLAVATNIEQVQVYDLSS 385 (882)
Q Consensus 326 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-------------------~~~~l~~~~~~~~i~i~d~~~ 385 (882)
|.+..|.+..................+.+.+..+.... . ..+.+++......++++...+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 55555555433322222222222233444444444321 1 112345555568999999988
Q ss_pred ceeeeeeeCCCcceEEeeeeee----cCCCEEEEEeecCCeEEEEeCCCceEEeeeecc----cccEEEEEEccCCC
Q 002782 386 MSCSYVLAGHSEIVLCLDTCAL----SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH----MGAVGAVAFSKKLQ 454 (882)
Q Consensus 386 ~~~~~~~~~~~~~v~~~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~v~~s~~~~ 454 (882)
.+...... .....|-..++. ..+...|++-..+|.++++.+..-+.+.....+ ...+....++++|.
T Consensus 245 ~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 245 SKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp --EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred Ccccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 77665544 333333332232 223445888889999999999987777655542 23344556677776
No 341
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.21 E-value=0.0012 Score=71.13 Aligned_cols=189 Identities=17% Similarity=0.124 Sum_probs=104.1
Q ss_pred ceEEccCCCEEEEEeCC------------eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 002782 24 PLVVSSDGSFIACACGE------------SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST 91 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~------------~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~ 91 (882)
.+|.+|.|..+|...+. .|.||+. .|+.+..+.-..+.|.++.|+.+.. |++...||.++++|+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF- 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC-
Confidence 35566666666665554 5999996 5666776665558999999998655 5566789999999986
Q ss_pred Cee-------EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeEEEEee---cCC-----C-cEEE-EEEe
Q 002782 92 LKC-------LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV-DGGFCTHYFK---GHK-----G-VVSS-ILFH 153 (882)
Q Consensus 92 ~~~-------~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~-~~~~~~~~~~---~h~-----~-~V~~-l~f~ 153 (882)
|+. +.........+.+..+..+|-.+.+ .++.+.+-+- ........+. +.. . .... ..++
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 333 1111222233444455556633333 3444443322 2211111111 100 0 0111 1222
Q ss_pred cCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceee
Q 002782 154 PDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK 223 (882)
Q Consensus 154 ~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 223 (882)
.+ ....+....++.+.+-+-...+. +. ..+++..|++||+|++++.-..+|.+.+.+.+-.+..
T Consensus 188 ~~--~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~ 251 (410)
T PF04841_consen 188 SD--RVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL 251 (410)
T ss_pred cC--cceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccccee
Confidence 22 22234444445555333222111 11 2368999999999999999999999988876544433
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.21 E-value=0.00045 Score=75.19 Aligned_cols=194 Identities=15% Similarity=0.131 Sum_probs=128.2
Q ss_pred ccccccCC--ceEEccCCCEEEEEeCC--eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCC----CcEEEE
Q 002782 16 LQQFYGGG--PLVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS----REIRVW 87 (882)
Q Consensus 16 ~~~~y~g~--~va~s~dg~~la~~~~~--~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~d----g~i~iw 87 (882)
-+-+|.++ .+=++|||+.+...... .+.+.|.++.+....+.-.. .-..++++|||+++++.+.+ .++..-
T Consensus 187 t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em 265 (635)
T PRK02888 187 TGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEM 265 (635)
T ss_pred ccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeee
Confidence 33344444 56678999988665432 58889999988877766544 33678999999999887632 223333
Q ss_pred ECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----C-eEEEEeecCCCcEEEEEEecCCCccEEE
Q 002782 88 DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG----G-FCTHYFKGHKGVVSSILFHPDTDKSLLF 162 (882)
Q Consensus 88 d~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~----~-~~~~~~~~h~~~V~~l~f~~~~~~~~l~ 162 (882)
+..+...+..+.... + -++.++|++... .++.|.|.|..+ + ..+..+. -......+.++||+++ +++
T Consensus 266 ~a~e~d~~vvfni~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGky-lyV 337 (635)
T PRK02888 266 MAAERDWVVVFNIAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKY-FIA 337 (635)
T ss_pred ccccCceEEEEchHH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCE-EEE
Confidence 322222222111100 0 133457877665 357899999988 3 4444443 5667889999999874 666
Q ss_pred EEeCCCcEEEEECCCCeE------------EEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 002782 163 SGSDDATVRVWDLLAKKC------------VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (882)
Q Consensus 163 sgs~dg~I~vwd~~~~~~------------~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 219 (882)
++..+.+|.|.|+.+.+. +....--. .....+|.++|....+.-.|..|..|++..
T Consensus 338 anklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 338 NGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 777799999999987552 33333222 234568899999888888999999999986
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.18 E-value=0.00027 Score=76.02 Aligned_cols=161 Identities=13% Similarity=0.118 Sum_probs=91.6
Q ss_pred CceEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC
Q 002782 23 GPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (882)
Q Consensus 23 ~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~ 102 (882)
..+.++|+|+++++++++...|+.....+....- .-..++|+++++ +|+-..++.|.|+.--+.+....++..
T Consensus 36 ~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G-----~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~- 108 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFG-----SGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP- 108 (443)
T ss_dssp SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEE-----E-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-
T ss_pred eeEEECCCCCEEEEEcCCEEEEEEccCCcccccC-----ceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-
Confidence 4799999999999988888888885444443322 235688999665 677776889999743233333334322
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC----
Q 002782 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---- 178 (882)
Q Consensus 103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~---- 178 (882)
..+..+-. |.+|+..+. +.|.+||+++++.+..+... +|..+.|+++++. ++..+.+ .+.+++....
T Consensus 109 ~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~--val~t~~-~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 109 FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL--VALVTKD-SIYILKYNLEAVAA 179 (443)
T ss_dssp S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSE--EEEE-S--SEEEEEE-HHHHHH
T ss_pred cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCE--EEEEeCC-eEEEEEecchhccc
Confidence 23444433 887877765 48999999999999988733 4899999998764 5555554 5777765433
Q ss_pred -------eEEEEecCcccceEEEEEccC
Q 002782 179 -------KCVATLDKHFSRVTSMAITSD 199 (882)
Q Consensus 179 -------~~~~~l~~h~~~v~~l~~s~~ 199 (882)
..+..+..-...|.+.+|..+
T Consensus 180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp BTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred ccccCchhceEEEEEecceeEEEEEEcC
Confidence 022233222456777788655
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.00029 Score=75.71 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=99.8
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-
Q 002782 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS-WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC- 136 (882)
Q Consensus 59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~-~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~- 136 (882)
|...|.--+++..+++++.|+..|.+++|+-..+..... ..+-.+.+..+..|++..++|.|+..|.|.|+-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 445566666777899999999999999999777654432 233456677788899999999999999999998865321
Q ss_pred ----EEE-eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCC----eEEEEecCcccceEEEEEc
Q 002782 137 ----THY-FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDKHFSRVTSMAIT 197 (882)
Q Consensus 137 ----~~~-~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~----~~~~~l~~h~~~v~~l~~s 197 (882)
+.. -+.|...|++++|++++.. +++|...|.|..-.+.+. ...+.+-.-.+.|..+.+.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k--~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMK--LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccccccCCceEEEEEecccccE--EeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 111 1247889999999999877 999999999999988772 1122333344566666554
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.14 E-value=0.0033 Score=67.79 Aligned_cols=221 Identities=12% Similarity=0.127 Sum_probs=121.6
Q ss_pred ceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEE-ecCCCCC
Q 002782 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-SFDGLSD 476 (882)
Q Consensus 398 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~w-d~~~~~~ 476 (882)
.+..+. .+|+|+. +++ +.+|...++.....+.... +.-...+|.+.+. +++-...++|.++ ++...
T Consensus 34 ~p~~ls--~npngr~-v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~-- 100 (443)
T PF04053_consen 34 YPQSLS--HNPNGRF-VLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNE-- 100 (443)
T ss_dssp --SEEE--E-TTSSE-EEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE---
T ss_pred CCeeEE--ECCCCCE-EEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc--EEEEECCCeEEEEEcCccc--
Confidence 355565 8899987 444 5688888888554443322 3344567887543 6777778899996 33211
Q ss_pred CCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC
Q 002782 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 556 (882)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 556 (882)
....+. ....+..+-. |.+|+..+.+ .|.+||..+++.+..+... +|..+.|++++.+++..+.
T Consensus 101 ---------~~k~i~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 101 ---------VVKSIK-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp ---------TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S
T ss_pred ---------cceEEc-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC
Confidence 000000 1112233322 8888877654 7999999999999988743 4899999999999999876
Q ss_pred CCcEEEEecCCC-----------ceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEE
Q 002782 557 DKTIKIWSISDG-----------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 625 (882)
Q Consensus 557 d~~i~iwd~~~~-----------~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 625 (882)
+ ++.|++.... .....+..-...|.+.+|..+ .++-.... .++. +..|+.- ++..-..++.=
T Consensus 165 ~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~-~i~~ld~~~yl 237 (443)
T PF04053_consen 165 D-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG-IIAHLDKPLYL 237 (443)
T ss_dssp --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE-EEEE-SS--EE
T ss_pred C-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc-eEEEcCCceEE
Confidence 4 6777764322 133333322567888888866 44333333 7776 4455532 22222456777
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782 626 LAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (882)
Q Consensus 626 l~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 654 (882)
+...+..+.+.....|+.+..+.+.....
T Consensus 238 lgy~~~~~~ly~~Dr~~~v~~~~ld~~~~ 266 (443)
T PF04053_consen 238 LGYLPKENRLYLIDRDGNVISYELDLSEL 266 (443)
T ss_dssp EEEETTTTEEEEE-TT--EEEEE--HHHH
T ss_pred EEEEccCCEEEEEECCCCEEEEEECHHHH
Confidence 78888888999999999999998887654
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.11 E-value=0.0017 Score=63.70 Aligned_cols=189 Identities=15% Similarity=0.213 Sum_probs=114.5
Q ss_pred CceEEccCCCEEEEEeCC--eEEEEEcCCCceeeeecCC-CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------
Q 002782 23 GPLVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLK------ 93 (882)
Q Consensus 23 ~~va~s~dg~~la~~~~~--~I~i~d~~~~~~~~~l~~~-~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~------ 93 (882)
..++|.||.+.|++..++ .|..++. +|+.++.+.-. .+..-.+++..++.++++--+++.+.++++....
T Consensus 25 SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~ 103 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRA 103 (248)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EE
T ss_pred cccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchh
Confidence 369999998888877766 6888886 58888776533 2456788898888887777678999999883321
Q ss_pred eEEEee-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEe--------ecCCCcEEEEEEecCCC
Q 002782 94 CLRSWK-----GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG---GFCTHYF--------KGHKGVVSSILFHPDTD 157 (882)
Q Consensus 94 ~~~~~~-----~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~---~~~~~~~--------~~h~~~V~~l~f~~~~~ 157 (882)
....+. .++..+-.++|+|.++.|..+-...-..++.+.. +..+... ......+.+++++|...
T Consensus 104 ~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~ 183 (248)
T PF06977_consen 104 DVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTG 183 (248)
T ss_dssp EEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTT
T ss_pred hceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCC
Confidence 112221 2556799999999988888877666666776653 2222111 12345689999999855
Q ss_pred ccEEEEEeCCCcEEEEECCCCeEEEEecCcc---------cceEEEEEccCCCEEEEEeCCCeEEEE
Q 002782 158 KSLLFSGSDDATVRVWDLLAKKCVATLDKHF---------SRVTSMAITSDGSTLISAGRDKVVNLW 215 (882)
Q Consensus 158 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~---------~~v~~l~~s~~~~~l~s~~~dg~i~vw 215 (882)
.+++....+..|..+| .+|+.+..+.-.. ...-.++|.++|+ |+..+.-+..++|
T Consensus 184 -~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 184 -HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred -eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 5666678888999999 6777665543221 3678999999985 5555566655554
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0015 Score=70.01 Aligned_cols=208 Identities=20% Similarity=0.242 Sum_probs=152.2
Q ss_pred cCCceEEccCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeeE
Q 002782 21 GGGPLVVSSDGSFIACAC--GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH---SREIRVWDLSTLKCL 95 (882)
Q Consensus 21 ~g~~va~s~dg~~la~~~--~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~---dg~i~iwd~~~~~~~ 95 (882)
.+..+++++++..+++.. .+.|.+.|..+.+..+...-.. .-..++++|+++.+.++.. ++++.+.|-.+++.+
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 334789999999777776 4589999988888777665433 4578999999988877655 689999999999988
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEE-E---eecCCCcEEEEEEecCCCccEEEEEeC-CCc
Q 002782 96 RSWKGHDGPAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTH-Y---FKGHKGVVSSILFHPDTDKSLLFSGSD-DAT 169 (882)
Q Consensus 96 ~~~~~h~~~V~~l~fs~~~~~lasg~-~dg~v~vwd~~~~~~~~-~---~~~h~~~V~~l~f~~~~~~~~l~sgs~-dg~ 169 (882)
.....-..+ ..++++|+|+.+.... .++.|.+.|..+..... . ...-...-..+.+.|++...+++-... ++.
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 886655556 8999999999776655 67999999987766553 1 011223346678899987533333222 378
Q ss_pred EEEEECCCCeEEEE-ecCcccceEEEEEccCCCEEEEEeC-CCeEEEEecCCceeeeeecCcc
Q 002782 170 VRVWDLLAKKCVAT-LDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYE 230 (882)
Q Consensus 170 I~vwd~~~~~~~~~-l~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~ 230 (882)
+...|..++..... ..........+.++|+|..+.+... .+.+.+.|..+.......+...
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccc
Confidence 99999998887765 2221115667889999999988844 4889999998887776655443
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.00031 Score=75.29 Aligned_cols=180 Identities=21% Similarity=0.237 Sum_probs=113.2
Q ss_pred eEEccCCCEEEEEe---CC--eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCeeEE
Q 002782 25 LVVSSDGSFIACAC---GE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GHSR--EIRVWDLSTLKCLR 96 (882)
Q Consensus 25 va~s~dg~~la~~~---~~--~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~-~~dg--~i~iwd~~~~~~~~ 96 (882)
-+|+|+++.+++.. +. .+.++|+++++....+. -...-..-+|||||+.||.+ ..|| .|.+.|+.++...+
T Consensus 198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~ 276 (425)
T COG0823 198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR 276 (425)
T ss_pred cccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee
Confidence 56889999877763 22 59999999987555443 12223557999999988765 4455 46666877766333
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCc--EE
Q 002782 97 SWKGHDGPAIGMACHPSGGLLATAGAD-R--KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT--VR 171 (882)
Q Consensus 97 ~~~~h~~~V~~l~fs~~~~~lasg~~d-g--~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~--I~ 171 (882)
+..-.+.-..=.|+|||++++..+.. | .|.+.|++.+.. ..+....+.-..-.|+||++.. ++....+|. |.
T Consensus 277 -Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i-~~~~~~~g~~~i~ 353 (425)
T COG0823 277 -LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKI-VFESSSGGQWDID 353 (425)
T ss_pred -cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEE-EEEeccCCceeeE
Confidence 54433444467899999999987643 3 477777777664 3333333333377799998863 333333455 66
Q ss_pred EEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCC
Q 002782 172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (882)
Q Consensus 172 vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~d 209 (882)
+.|+.++...+.+. +......-+|.++|..++..+..
T Consensus 354 ~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 354 KNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence 66766665433332 23334455677888877765543
No 349
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.86 E-value=0.048 Score=56.36 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=85.2
Q ss_pred EEEcCCCceeeeecCCCccE-----EEEEEcCCCCEEEEEeC-C--CcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCC
Q 002782 44 IVDLSNASIKSTIEGGSDTI-----TALALSPDDKLLFSSGH-S--REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG 115 (882)
Q Consensus 44 i~d~~~~~~~~~l~~~~~~I-----~~l~~spd~~~las~~~-d--g~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~ 115 (882)
--|..||..+..|..+...- +.=+|.+||+.|+.++. + ..+.+-|+.+++..+.-.+..........+|+++
T Consensus 14 ~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 14 WIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp EE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS
T ss_pred EeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC
Confidence 34778888777776433221 22367889977665544 4 4677889999886665443223233466778888
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEe----------------------CCCcEEEE
Q 002782 116 LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS----------------------DDATVRVW 173 (882)
Q Consensus 116 ~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs----------------------~dg~I~vw 173 (882)
.++-......|+--|+.+.+....+.....-+-...|..+.+...++..- ..+.|.--
T Consensus 94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 94 ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 88776666789999999987666666566666667776554443343321 12345555
Q ss_pred ECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCC
Q 002782 174 DLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK 210 (882)
Q Consensus 174 d~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg 210 (882)
|+.+|+....+. ....+..+.|+|....++.=|..|
T Consensus 174 dl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEG 209 (386)
T PF14583_consen 174 DLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEG 209 (386)
T ss_dssp ETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S
T ss_pred ECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccC
Confidence 666666443333 334566778888666666555443
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.027 Score=60.49 Aligned_cols=235 Identities=17% Similarity=0.107 Sum_probs=151.8
Q ss_pred eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCccccc
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 485 (882)
..+.+..+.++-.....+...+................-..+++++.+....+....++.|.+.|......
T Consensus 38 ~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--------- 108 (381)
T COG3391 38 VNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--------- 108 (381)
T ss_pred EcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce---------
Confidence 55666543444433334555554422222211111134457788888887777777789999999554321
Q ss_pred chhhhhhcCCCeeEEEEcCCCcEEEEEcC---CCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEee-CCCcEE
Q 002782 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQ---DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIK 561 (882)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~la~~s~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~ 561 (882)
.....-......++++|+++.+.++.. ++++.+.|..+.+.......-..+ ..++++|+|+.++.+. .++.|.
T Consensus 109 --~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 109 --LGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred --eeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence 111111225678999999977776655 688999999999888885544445 8999999999666654 789999
Q ss_pred EEecCCCceee-E---eecCcCCEEEEEEEeCCCEEEEeecC---CeEEEEEcCCCeeEEEeccCCC-ceEEEEEcCCCC
Q 002782 562 IWSISDGSCLK-T---FEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHED-KIWALAVGKKTE 633 (882)
Q Consensus 562 iwd~~~~~~~~-~---~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~-~v~~l~~s~~~~ 633 (882)
+.|.......+ . ...-......+.+.++|.++...... +.+...|..++.....-..-.. ....+.++|+|.
T Consensus 186 vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~ 265 (381)
T COG3391 186 VIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGK 265 (381)
T ss_pred EEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCC
Confidence 99976655543 1 11122334568899999977655443 5899999988887765221122 456678999999
Q ss_pred EEEEEeC-CCCEEEEECCCH
Q 002782 634 MFATGGS-DALVNLWHDSTA 652 (882)
Q Consensus 634 ~l~s~~~-dg~i~iw~~~~~ 652 (882)
.+.+... .+.+.+-|..+.
T Consensus 266 ~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 266 AAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred EEEEEecCCCeEEEEeCCCC
Confidence 8887744 366777666653
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.85 E-value=0.0038 Score=66.36 Aligned_cols=276 Identities=12% Similarity=0.122 Sum_probs=136.9
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeee--eeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC--
Q 002782 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY--VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-- 430 (882)
Q Consensus 355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-- 430 (882)
.|..+.|.+ +..-|+++...|.|.+|.....+... ....+.+ . .... + ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~----~------~~~~-~--~~~~~~~~l~di~~r~ 68 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLD----Y------NFRR-F--SLNNSPGKLTDISDRA 68 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE----------------------------S-----GGGSS-SEEE-GGG-
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccC----c------cccc-c--cccCCCcceEEehhhC
Confidence 456677766 55678889999999998765432221 0000000 0 0000 0 00011111222211
Q ss_pred -------ceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEc
Q 002782 431 -------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (882)
Q Consensus 431 -------~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (882)
-.+...+....++|++++.|.-| |++.|..+|.+.+.|++...-.... ..............++++.|+
T Consensus 69 ~~~~~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~--~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 69 PPSLKEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNE--NIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp -TT-SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEE--EGGG--T-SS----EEEEEEE
T ss_pred CcccccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeec--cccccccccccccCeeEEEEE
Confidence 12333455568999999998665 8999999999999999754211000 000111122234567888887
Q ss_pred C-----CC---cEEEEEcCCCcEEEEeCC--C-ceeE----EEEecccCceEEEE-EcCC--------------------
Q 002782 504 P-----ND---SLVCTGSQDRTACVWRLP--D-LVSV----VTFRGHKRGIWSVE-FSPV-------------------- 547 (882)
Q Consensus 504 ~-----~~---~~la~~s~dg~i~iwd~~--~-~~~~----~~~~~h~~~v~~l~-~s~~-------------------- 547 (882)
. |+ -.+++|+..|.+.+|.+. . +... .....+.++|..+. |+.+
T Consensus 145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence 3 33 478899999999999874 1 2111 12223556666655 3221
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEE-----eCCCEEEEeecCCeEEEEEcCCCeeEEEeccCC--
Q 002782 548 DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL-----TRGAQIVSCGADGLVKLWTVRTGECIATYDKHE-- 620 (882)
Q Consensus 548 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-----~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-- 620 (882)
-+-++....+..+|++...+.+.........-....+.+. ..+..|++-..+|.|+++.+..-+.+....-+.
T Consensus 225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~ 304 (395)
T PF08596_consen 225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL 304 (395)
T ss_dssp --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS--
T ss_pred cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc
Confidence 0123344456889999998887765554332333445553 356788899999999999999988887776432
Q ss_pred --CceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782 621 --DKIWALAVGKKTEMFATGGSDALVNLWHD 649 (882)
Q Consensus 621 --~~v~~l~~s~~~~~l~s~~~dg~i~iw~~ 649 (882)
..+....++++|..++-.+.. .+.++.+
T Consensus 305 d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 305 DSRRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp -HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred ccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 234556788999877665543 3444433
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.85 E-value=0.013 Score=57.57 Aligned_cols=211 Identities=11% Similarity=0.134 Sum_probs=115.8
Q ss_pred eeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCC-CcceEEeeeeeecCCCEEEEEeecCCeEE
Q 002782 346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH-SEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (882)
Q Consensus 346 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (882)
...+.+...++..++|.|+.+.++++....+.|..++.. ++.++.+.-. .+..-.++ +..++.. +++.-.++.+.
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~--y~g~~~~-vl~~Er~~~L~ 89 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGIT--YLGNGRY-VLSEERDQRLY 89 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEE--E-STTEE-EEEETTTTEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEE--EECCCEE-EEEEcCCCcEE
Confidence 456777888899999999889999999999999999974 6666665432 24455555 5455543 55555688898
Q ss_pred EEeCCCce------EEeee-----ecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCc-ccccchhhhhh
Q 002782 425 LWDSESRC------CVGVG-----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-MNLKAKAVVAA 492 (882)
Q Consensus 425 iwd~~~~~------~~~~~-----~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~ 492 (882)
++++.... ....+ ..+...+-.++|.+.++.++ .+-+.....+|.+.......... ...........
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 88873211 11111 13556789999999877544 45666667777776421000000 00001111233
Q ss_pred cCCCeeEEEEcCC-CcEEEEEcCCCcEEEEeCCCceeEEEEeccc---------CceEEEEEcCCCCEEEEeeCCCcEEE
Q 002782 493 HGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHK---------RGIWSVEFSPVDQVVITASGDKTIKI 562 (882)
Q Consensus 493 ~~~~i~~~~~s~~-~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~s~~~~~l~s~~~d~~i~i 562 (882)
....+.+++++|. |.+++.+..++.|..+| .+|+.+..+.-.. .....|+|.++|++.+++ .-+..++
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence 4457889999995 56777778888899999 6666665544221 357899999998766554 4444443
Q ss_pred E
Q 002782 563 W 563 (882)
Q Consensus 563 w 563 (882)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 3
No 353
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.85 E-value=0.089 Score=58.94 Aligned_cols=109 Identities=18% Similarity=0.136 Sum_probs=66.7
Q ss_pred CCCEEEEEeCCeEEEEEcCCCceeeeecCCC-ccEE---E-------EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 002782 30 DGSFIACACGESINIVDLSNASIKSTIEGGS-DTIT---A-------LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (882)
Q Consensus 30 dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~-~~I~---~-------l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~ 98 (882)
+|..+++...+.|.-+|..+|+.+-.+.... ..+. + +++. +..++.++.++.|.-.|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4544444445688999999999886654311 1111 1 1222 346777888999999999999998776
Q ss_pred ecCCCC-EEEEEEcC---CCCEEEEEe------CCCcEEEEECCCCeEEEEee
Q 002782 99 KGHDGP-AIGMACHP---SGGLLATAG------ADRKVLVWDVDGGFCTHYFK 141 (882)
Q Consensus 99 ~~h~~~-V~~l~fs~---~~~~lasg~------~dg~v~vwd~~~~~~~~~~~ 141 (882)
...... -..+.-+| ++ .++++. .+|.|.-+|.++|+.+..+.
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 531110 00111122 34 455543 26899999999998876654
No 354
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.84 E-value=0.00055 Score=72.62 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=71.5
Q ss_pred EEEEEcCCCceee----eecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEE
Q 002782 42 INIVDLSNASIKS----TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL 117 (882)
Q Consensus 42 I~i~d~~~~~~~~----~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~l 117 (882)
-.+|+...++..+ ++ .....|.|.+++|+...|+.|+.||.|.+||...+... +.-..-..+.++|+|+|..+
T Consensus 238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEE
Confidence 5677776554321 22 35678999999999999999999999999998776433 22345677899999999999
Q ss_pred EEEeCCCcEEEEECCCC
Q 002782 118 ATAGADRKVLVWDVDGG 134 (882)
Q Consensus 118 asg~~dg~v~vwd~~~~ 134 (882)
++|+..|.+.+||+.-+
T Consensus 315 ~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 315 VVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCceEEEEEeecC
Confidence 99999999999998543
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.083 Score=57.17 Aligned_cols=214 Identities=12% Similarity=0.059 Sum_probs=107.5
Q ss_pred cEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCce------EEeeeecccccEEEEEEc
Q 002782 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC------CVGVGTGHMGAVGAVAFS 450 (882)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~v~~s 450 (882)
.|.+|+....... .+.-..+.+.++. |..+. . ++.-..||.++++|+.... .+....-....+....+.
T Consensus 62 ~I~iys~sG~ll~-~i~w~~~~iv~~~--wt~~e-~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKLLS-SIPWDSGRIVGMG--WTDDE-E-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCEeE-EEEECCCCEEEEE--ECCCC-e-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccC
Confidence 3777776544332 3322227777886 65644 4 5666789999999986433 111111111222222333
Q ss_pred cCCCcEEEEeeCCCeEEEEecCCCCCCCC-Ccccccchhhh--hhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCce
Q 002782 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAE-QPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 527 (882)
Q Consensus 451 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~ 527 (882)
.+| + +.-..++.+.+. ........ ......+.... ..+........++.+....+....++.+.+.+-...+
T Consensus 137 ~~G--i-vvLt~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 137 KNG--I-VVLTGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred CCC--E-EEECCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 333 2 323334444333 22211100 00000000000 0011110113344555555555555666644433221
Q ss_pred eEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecC-cCCEEEEEEEeCCCEEEEeecCCeEEEEE
Q 002782 528 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (882)
Q Consensus 528 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 606 (882)
. +. ..+++..+++||+++++|.-..+|.+.+.+.+-.+.+..+... ......+.|.-++..++.- ...|.+..
T Consensus 212 ~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 212 Q---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred c---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 1 11 3468999999999999999999999999987666666666543 3456677777654333332 33455544
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.0025 Score=68.43 Aligned_cols=181 Identities=16% Similarity=0.099 Sum_probs=107.9
Q ss_pred eecCCCEEEEEeecC---CeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcc
Q 002782 406 ALSSGKILIVTGSKD---NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482 (882)
Q Consensus 406 ~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 482 (882)
+++++..+....-.. ..+.++++.++....... ..+.-..-+|+|+|+.++++...||...+|-++.....
T Consensus 200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----- 273 (425)
T COG0823 200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----- 273 (425)
T ss_pred cCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-----
Confidence 677777633332222 458889998876544433 22333456899999988889888988776655432211
Q ss_pred cccchhhhhhcCCCeeEEEEcCCCcEEEEEcC-CC--cEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCC-C
Q 002782 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD-K 558 (882)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-~ 558 (882)
...+....+.-..-.|+|||+.++..+. .| .|.+++.+.... ..+......-..-.|+|||++++..+.. |
T Consensus 274 ----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g 348 (425)
T COG0823 274 ----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGG 348 (425)
T ss_pred ----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence 0111111122236689999998886654 34 477777766654 2333233333377899999999887743 4
Q ss_pred c--EEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeec
Q 002782 559 T--IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598 (882)
Q Consensus 559 ~--i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 598 (882)
. |.+.|+.++...+.+. +......-.|.++|..+...+.
T Consensus 349 ~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 349 QWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 3 6777776665443333 3333334567788877765544
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.74 E-value=0.034 Score=61.10 Aligned_cols=204 Identities=18% Similarity=0.247 Sum_probs=114.8
Q ss_pred ccCCceEEccCCCEEEEEeC--C----eEEEEEcCCCceeee-ecCCCccEEEEEEcCCCCEEEEEeC-----------C
Q 002782 20 YGGGPLVVSSDGSFIACACG--E----SINIVDLSNASIKST-IEGGSDTITALALSPDDKLLFSSGH-----------S 81 (882)
Q Consensus 20 y~g~~va~s~dg~~la~~~~--~----~I~i~d~~~~~~~~~-l~~~~~~I~~l~~spd~~~las~~~-----------d 81 (882)
+..+..++||||+++|++.. + .++++|+++|+.+.. +... .-..++|.+|++.++.... .
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 34457889999999998742 2 599999999986643 2221 1134999999988765543 2
Q ss_pred CcEEEEECCCCee--EEEeecCCCC--EEEEEEcCCCCEEEEEeC---C-CcEEEEECCCC----eEEEEeecCCCcEEE
Q 002782 82 REIRVWDLSTLKC--LRSWKGHDGP--AIGMACHPSGGLLATAGA---D-RKVLVWDVDGG----FCTHYFKGHKGVVSS 149 (882)
Q Consensus 82 g~i~iwd~~~~~~--~~~~~~h~~~--V~~l~fs~~~~~lasg~~---d-g~v~vwd~~~~----~~~~~~~~h~~~V~~ 149 (882)
..|+.|.+.+... ...+.....+ ...+..++|+++|+..+. + ..+.+-|...+ .....+......+..
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 2488888877642 2444443333 678899999999876442 2 45788888764 223333333333433
Q ss_pred EEEecCCCccEEEEE--eCCCcEEEEECCCCeE---EEEecCccc--ceEEEEEccCCCEEEEEeC-CC--eEEEEecCC
Q 002782 150 ILFHPDTDKSLLFSG--SDDATVRVWDLLAKKC---VATLDKHFS--RVTSMAITSDGSTLISAGR-DK--VVNLWDLRD 219 (882)
Q Consensus 150 l~f~~~~~~~~l~sg--s~dg~I~vwd~~~~~~---~~~l~~h~~--~v~~l~~s~~~~~l~s~~~-dg--~i~vwd~~~ 219 (882)
..-+. ++..++.|. ...+.|...++.+... ...+..|.. .+..+.. .+.+|+.... ++ .|+++++..
T Consensus 282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-
T ss_pred EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCC
Confidence 33233 243334343 2346677778776652 334555554 3444444 4555555443 33 578888883
Q ss_pred ceeeeeecC
Q 002782 220 YSCKLTVPT 228 (882)
Q Consensus 220 ~~~~~~~~~ 228 (882)
......++.
T Consensus 359 ~~~~~~~~~ 367 (414)
T PF02897_consen 359 GKESREIPL 367 (414)
T ss_dssp TEEEEEEES
T ss_pred CcEEeeecC
Confidence 344444333
No 358
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.73 E-value=0.078 Score=54.88 Aligned_cols=196 Identities=19% Similarity=0.244 Sum_probs=102.0
Q ss_pred eEEccCCCEEEEEeC----CeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 002782 25 LVVSSDGSFIACACG----ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (882)
Q Consensus 25 va~s~dg~~la~~~~----~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~ 100 (882)
=+|++||+.|+.+++ ..+.+.|+.+++..+.-.+.........++|+++.++-...+..|+-.|+.+.+....+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 456789977777654 2799999999998776665433333567789888887665667899999999887666666
Q ss_pred CCCCEEEEEE--cCCCCEEEEEeC----------------------CCcEEEEECCCCeEEEEeecCCCcEEEEEEecCC
Q 002782 101 HDGPAIGMAC--HPSGGLLATAGA----------------------DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT 156 (882)
Q Consensus 101 h~~~V~~l~f--s~~~~~lasg~~----------------------dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~ 156 (882)
....+-...| +.|+..++-.-. ...|.--|+.+|+....+. -...+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 6665654555 446666554321 2356666788877554444 45567788899975
Q ss_pred CccEEEEEeCCC-----cEEEEECC-CCeEEEEecCcc--cceEEEEEccCCCEEEEEe-----CCCeEEEEecCCceee
Q 002782 157 DKSLLFSGSDDA-----TVRVWDLL-AKKCVATLDKHF--SRVTSMAITSDGSTLISAG-----RDKVVNLWDLRDYSCK 223 (882)
Q Consensus 157 ~~~~l~sgs~dg-----~I~vwd~~-~~~~~~~l~~h~--~~v~~l~~s~~~~~l~s~~-----~dg~i~vwd~~~~~~~ 223 (882)
.. +++-+..| .-|+|-+. .+.....+..|. ..+..=-|.|||..+.--+ .+..|.-+|..+++..
T Consensus 200 p~--li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 200 PT--LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp EE--EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred CC--EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 54 44433222 12556443 233333443332 2445556899998776543 2446777788776543
No 359
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=97.71 E-value=0.00011 Score=71.43 Aligned_cols=89 Identities=20% Similarity=0.312 Sum_probs=79.0
Q ss_pred HHHHHHHhccC------HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHhccCCcchhhcccC---hHhHHhhhccchhhH
Q 002782 712 LQIEKALHALG------KEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKG---ISDVLEGLIPYTQRH 782 (882)
Q Consensus 712 ~~l~~~~~~l~------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~l~~l~~~~~~~ 782 (882)
..++-.|+.|+ .+++..+++|+..+....+.++++|.+|...|+.|+ +.|...+. +.+.|+.|....++-
T Consensus 139 S~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~dfElvQa~l~vFLk~Hg-d~i~~~~~~~~L~~~l~~l~~~q~~~ 217 (237)
T PF04192_consen 139 SAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRRDFELVQAYLSVFLKVHG-DVIMESEEEEELREALEELREAQESE 217 (237)
T ss_pred hHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 36777778887 778899999999999999999999999999999999 88988888 999999999999999
Q ss_pred HHHHHHHHhhhhhhheeccccCCCC
Q 002782 783 FSRIDRLVRSTFLLDYTLTGMSVIE 807 (882)
Q Consensus 783 ~~~~~~l~~~~~~~~~~~~~~~~~~ 807 (882)
+.||++|+ +|++.-++|++
T Consensus 218 w~~L~~l~------~~~~cvv~fl~ 236 (237)
T PF04192_consen 218 WKRLDDLF------QYCSCVVSFLR 236 (237)
T ss_pred HHHHHHHH------hhhhhhhhhhc
Confidence 99999999 77776666553
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.71 E-value=0.02 Score=60.24 Aligned_cols=218 Identities=15% Similarity=0.160 Sum_probs=123.8
Q ss_pred eEEEEeCCCceEEeeeecc-cccEEEE---EEccC---CCcEEEEeeC----------CCeEEEEecCCCCCCCCCcccc
Q 002782 422 SVRLWDSESRCCVGVGTGH-MGAVGAV---AFSKK---LQNFLVSGSS----------DHTIKVWSFDGLSDDAEQPMNL 484 (882)
Q Consensus 422 ~i~iwd~~~~~~~~~~~~~-~~~v~~v---~~s~~---~~~~l~s~~~----------dg~i~~wd~~~~~~~~~~~~~~ 484 (882)
.|++.|..+.+.+..+.-. ...+.++ .+..+ ...+++.|+. .|.|.++++.... .....+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~---~~~~~l 79 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP---ENNFKL 79 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------EE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc---ccceEE
Confidence 5777777776666554321 2233333 33322 1457776653 2889999988630 000111
Q ss_pred cchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCce-eEEEEe-cccCceEEEEEcCCCCEEEEeeCCCcEEE
Q 002782 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKI 562 (882)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~-~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~d~~i~i 562 (882)
+... .....++|++++-- +++++++. ++.|.+|++...+ ....-. .....+.++... +++++.|.....+.+
T Consensus 80 ~~i~-~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 80 KLIH-STEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEE-EEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEE-EEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 1111 22346788888866 55544433 4789999998777 333222 123355555554 679999998888888
Q ss_pred EecCC-CceeeEee--cCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCC-------Ce----eEEEeccCCCceEEE--
Q 002782 563 WSISD-GSCLKTFE--GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-------GE----CIATYDKHEDKIWAL-- 626 (882)
Q Consensus 563 wd~~~-~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~-------~~----~~~~~~~h~~~v~~l-- 626 (882)
+..+. +..+..+. .....++++.|.++++.++.++.+|.+.++.... +. .+..+. ..+.|+++
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~ 232 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRR 232 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEE
Confidence 86543 33233322 2345688899997778999999999999998762 22 223332 34667777
Q ss_pred -EEcC--CC------CEEEEEeCCCCEEEEEC
Q 002782 627 -AVGK--KT------EMFATGGSDALVNLWHD 649 (882)
Q Consensus 627 -~~s~--~~------~~l~s~~~dg~i~iw~~ 649 (882)
.+.| .+ ..++-++.+|.|...-.
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 4444 22 24888889999885433
No 361
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.69 E-value=0.0025 Score=71.60 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=106.4
Q ss_pred CceEEccCCCEEEEEeC------C---eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCC------------
Q 002782 23 GPLVVSSDGSFIACACG------E---SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS------------ 81 (882)
Q Consensus 23 ~~va~s~dg~~la~~~~------~---~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~d------------ 81 (882)
+..++||||+.+|+... + .|.+++. .+.......+. ..++-.|+|||+.|++....
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 37889999999998871 2 5666675 33333334443 37899999999988876532
Q ss_pred CcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE---EECCCCeE-E---EEee-cCCCcEEEEEEe
Q 002782 82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV---WDVDGGFC-T---HYFK-GHKGVVSSILFH 153 (882)
Q Consensus 82 g~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~v---wd~~~~~~-~---~~~~-~h~~~V~~l~f~ 153 (882)
+.+.+.++..+.... ...+.|..+.|||||.++|... ++.|.| -....|.. + ..+. +-...+..+.|.
T Consensus 430 gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 430 GQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred ceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 233333444333322 2356799999999999999876 477777 44445541 1 1122 233346889999
Q ss_pred cCCCccEEEEEeCCCcEEEEECCC-CeEEEEecC--cccceEEEEEccCCCEEEEEeCCCeEE
Q 002782 154 PDTDKSLLFSGSDDATVRVWDLLA-KKCVATLDK--HFSRVTSMAITSDGSTLISAGRDKVVN 213 (882)
Q Consensus 154 ~~~~~~~l~sgs~dg~I~vwd~~~-~~~~~~l~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~ 213 (882)
.++. |+.+..++.-.+|.+.- |.....+.. ...++.+++-+++ .++....+|.+.
T Consensus 506 ~~~~---L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 506 TGDS---LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cCCE---EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 8865 44555555555565432 222112222 2456777766653 466666666443
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.68 E-value=0.12 Score=57.82 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=42.5
Q ss_pred CcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccC
Q 002782 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH 619 (882)
Q Consensus 558 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h 619 (882)
|.|.-+|+.+|+.+...+... +...-.+.-.|..++.++.||.++.+|.++|+.+..++..
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~-p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDF-PLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCC-CCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 457778888888777665322 1111122335567778888999999999999999888753
No 363
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.63 E-value=0.0098 Score=62.93 Aligned_cols=90 Identities=16% Similarity=0.294 Sum_probs=63.5
Q ss_pred chhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEE-EEE-cCCC---------------
Q 002782 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS-VEF-SPVD--------------- 548 (882)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~-s~~~--------------- 548 (882)
....+......+.+++.+|++++.|+...-|.|.++|+.++..++.++|..+.-.. +.. .+..
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 33444555667899999999999999888899999999999888888875443111 111 1111
Q ss_pred -C-EEEEeeCCCcEEEEecCCCceeeEee
Q 002782 549 -Q-VVITASGDKTIKIWSISDGSCLKTFE 575 (882)
Q Consensus 549 -~-~l~s~~~d~~i~iwd~~~~~~~~~~~ 575 (882)
. +++-+-.-|.|.||+++.|..+..+.
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 1 33445667899999999888777664
No 364
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.61 E-value=0.08 Score=56.19 Aligned_cols=88 Identities=23% Similarity=0.314 Sum_probs=61.6
Q ss_pred ceEEccCCCEEEEEeCCeEEE----EEc-C----CCceeeeecC----C-CccEEEEEEc-----------CCCCEEEEE
Q 002782 24 PLVVSSDGSFIACACGESINI----VDL-S----NASIKSTIEG----G-SDTITALALS-----------PDDKLLFSS 78 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~~I~i----~d~-~----~~~~~~~l~~----~-~~~I~~l~~s-----------pd~~~las~ 78 (882)
.++++|+|.+||.+.++.+.| |+. . .+.......+ . .+.||++.+- ||...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 588999999999999885444 432 1 1222222221 1 1578777764 456789999
Q ss_pred eCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcC
Q 002782 79 GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112 (882)
Q Consensus 79 ~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~ 112 (882)
..+|.|++|.- +|.++..-.-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999995 7777776667888888888754
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.60 E-value=2.3e-05 Score=82.61 Aligned_cols=198 Identities=19% Similarity=0.248 Sum_probs=128.5
Q ss_pred cEEEEEEccCC-CcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcC-CCcEEEEEc----CCC
Q 002782 443 AVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGS----QDR 516 (882)
Q Consensus 443 ~v~~v~~s~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~s----~dg 516 (882)
.+.|+++.-+. +.+++.|..+|.|-+-.+...... ......++....++++|++ |...||.|- .|.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc--------cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 34455544332 347888999999999887654221 2334456777899999998 556777763 355
Q ss_pred cEEEEeCCCc--eeE--EEEec-ccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeEeecCcCCEEEEEEEe-C
Q 002782 517 TACVWRLPDL--VSV--VTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLT-R 589 (882)
Q Consensus 517 ~i~iwd~~~~--~~~--~~~~~-h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~-~ 589 (882)
.+.|||+.++ .+. ..+.+ -.....+++|-.+.+++.+|.....+.++|++.. .....+ .+..+..+...| .
T Consensus 130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFS 207 (783)
T ss_pred CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCC
Confidence 7999999876 222 12222 3445668999999999999999999999998632 111122 233455677778 6
Q ss_pred CCEEEEeecCCeEEEEE-cCCCe-eEEEeccC----CCceEEEEEcCCCC-EEEEEeC-CCCEEEEECCC
Q 002782 590 GAQIVSCGADGLVKLWT-VRTGE-CIATYDKH----EDKIWALAVGKKTE-MFATGGS-DALVNLWHDST 651 (882)
Q Consensus 590 g~~l~s~~~dg~i~iwd-~~~~~-~~~~~~~h----~~~v~~l~~s~~~~-~l~s~~~-dg~i~iw~~~~ 651 (882)
+.|+++-. ||.|-+|| ..+-+ ++.++... ...+..++|.|... .+++... .++|+++++..
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 77887766 99999999 43333 22222211 23489999998643 4444444 46788887653
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.024 Score=58.02 Aligned_cols=223 Identities=13% Similarity=0.060 Sum_probs=131.8
Q ss_pred eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCccccc
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 485 (882)
+.++...++.+--..+.|.-|+..++.... +... +.+.++..-..+. .|+++... +.+++....... ...
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p-~~~~~~~~~d~~g-~Lv~~~~g--~~~~~~~~~~~~-----t~~ 101 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSP-GGFSSGALIDAGG-RLIACEHG--VRLLDPDTGGKI-----TLL 101 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECC-CCcccceeecCCC-eEEEEccc--cEEEeccCCcee-----EEe
Confidence 566777667777778888888887664322 2222 2233333333333 34444332 445554322110 000
Q ss_pred chhhhhhcCCCeeEEEEcCCCcEEEEEcC-----C----CcEEEEeCC-CceeEEEEecccCceEEEEEcCCCCEEEEee
Q 002782 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQ-----D----RTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555 (882)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~la~~s~-----d----g~i~iwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 555 (882)
............+...+.|+|.+.++... . ..-.+|.+. .+.....+..+-..-+.|+||||++.|+.+.
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 00000111235678889999988776544 1 112455554 5666666666666678999999998888776
Q ss_pred C-CCcEEEEecCC--Cce-----eeEeecCcCCEEEEEEEeCCCEEEEeecCC-eEEEEEcCCCeeEEEeccCCCceEEE
Q 002782 556 G-DKTIKIWSISD--GSC-----LKTFEGHTSSVLRASFLTRGAQIVSCGADG-LVKLWTVRTGECIATYDKHEDKIWAL 626 (882)
Q Consensus 556 ~-d~~i~iwd~~~--~~~-----~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l 626 (882)
. .+.|.-|++.. +.. ...+..+.+..-.++...+|.+-+++..+| .|.+|+.+ |+.+..+..+...++++
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 5 47788887752 211 112222445666677888888776555554 99999987 99999998877888889
Q ss_pred EEc-CCCCEEEEEe
Q 002782 627 AVG-KKTEMFATGG 639 (882)
Q Consensus 627 ~~s-~~~~~l~s~~ 639 (882)
+|- ++.+.|...+
T Consensus 261 ~FgG~~~~~L~iTs 274 (307)
T COG3386 261 AFGGPDLNTLYITS 274 (307)
T ss_pred eEeCCCcCEEEEEe
Confidence 885 4445444333
No 367
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.56 E-value=0.024 Score=59.66 Aligned_cols=177 Identities=18% Similarity=0.207 Sum_probs=106.1
Q ss_pred CcEEEEeCCCceeeeeeeC-CCcceEEeeeeeecCC----CEEEEEeec----------CCeEEEEeCCCc----eEEee
Q 002782 376 EQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSG----KILIVTGSK----------DNSVRLWDSESR----CCVGV 436 (882)
Q Consensus 376 ~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~----~~~l~~~~~----------dg~i~iwd~~~~----~~~~~ 436 (882)
..|++.|..+...+..+.- ....+.++..+..+.+ ..++++|+. .|.+.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4678888887776655443 3345666665454542 455777653 289999999884 12221
Q ss_pred --eecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcC
Q 002782 437 --GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (882)
Q Consensus 437 --~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~ 514 (882)
-....++|++++--. . .++++ ..+.|.+|++.... .+....... ....+.++.. .++++++|+.
T Consensus 82 i~~~~~~g~V~ai~~~~--~-~lv~~-~g~~l~v~~l~~~~-------~l~~~~~~~-~~~~i~sl~~--~~~~I~vgD~ 147 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN--G-RLVVA-VGNKLYVYDLDNSK-------TLLKKAFYD-SPFYITSLSV--FKNYILVGDA 147 (321)
T ss_dssp EEEEEESS-EEEEEEET--T-EEEEE-ETTEEEEEEEETTS-------SEEEEEEE--BSSSEEEEEE--ETTEEEEEES
T ss_pred EEEEeecCcceEhhhhC--C-EEEEe-ecCEEEEEEccCcc-------cchhhheec-ceEEEEEEec--cccEEEEEEc
Confidence 224578899888773 2 33333 34889999998653 011111111 1124444444 4669999998
Q ss_pred CCcEEEEeCCC-ceeEEEEe--cccCceEEEEEcCCCCEEEEeeCCCcEEEEecC
Q 002782 515 DRTACVWRLPD-LVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (882)
Q Consensus 515 dg~i~iwd~~~-~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~ 566 (882)
...+.++.... ...+..+. .....++++.|-+++..++.+..+|.+.++...
T Consensus 148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 88888875443 22222222 245568899998777799999999999999875
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.52 E-value=0.012 Score=67.11 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=96.8
Q ss_pred eCCCcEEEEECCCCeeEEEeecCCCC-EEEEEEcC-----CCCEEEEEeCCCcEEEEECCCC--eEEEE-ee--cCCCcE
Q 002782 79 GHSREIRVWDLSTLKCLRSWKGHDGP-AIGMACHP-----SGGLLATAGADRKVLVWDVDGG--FCTHY-FK--GHKGVV 147 (882)
Q Consensus 79 ~~dg~i~iwd~~~~~~~~~~~~h~~~-V~~l~fs~-----~~~~lasg~~dg~v~vwd~~~~--~~~~~-~~--~h~~~V 147 (882)
.....|+-.|++.|+.+..|+.|... |..++=+. +..-...|-.+..+..||.+-. +++.. .+ ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34578999999999999999988744 55554321 1234566777889999999642 23211 11 234567
Q ss_pred EEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEec
Q 002782 148 SSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (882)
Q Consensus 148 ~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~ 217 (882)
+|++-+.+|. +|.|+.+|.||+||-...+....+++-..+|.++..+.||++++..+ +..+.+++.
T Consensus 581 s~~aTt~~G~---iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDGY---IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCce---EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 7887776654 99999999999999544444455677778999999999999998877 455777664
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.045 Score=56.03 Aligned_cols=208 Identities=14% Similarity=0.121 Sum_probs=128.1
Q ss_pred eEEccCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec--
Q 002782 25 LVVSSDGSFIACAC--GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-- 100 (882)
Q Consensus 25 va~s~dg~~la~~~--~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~-- 100 (882)
-.|.++...|+... ++.|.-|+..+|+.. .+.. ...++++..-.++..|+++.. -+.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 45667777655554 448999999877543 2322 233455554444555555543 467777766665333321
Q ss_pred ---CCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECC-CCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCC
Q 002782 101 ---HDGPAIGMACHPSGGLLATAGA---------DRKVLVWDVD-GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167 (882)
Q Consensus 101 ---h~~~V~~l~fs~~~~~lasg~~---------dg~v~vwd~~-~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~d 167 (882)
....-......|+|.+-++-.. -..-.||-+. .+.....+..+-..-+.|+||||++ .++++=+..
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~-tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK-TLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCC-EEEEEeCCC
Confidence 1245567888999987665333 1112455554 5666666666666778999999976 455555666
Q ss_pred CcEEEEECCC--C-----eEEEEecCcccceEEEEEccCCCEEEEEeCCC-eEEEEecCCceeeeeecCc-ceeeEEEec
Q 002782 168 ATVRVWDLLA--K-----KCVATLDKHFSRVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTY-EMVEAVCAI 238 (882)
Q Consensus 168 g~I~vwd~~~--~-----~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~-~~~~~~~~~ 238 (882)
+.|..|++.. + .....+..+.+..-.++...+|.+-+++..+| .|..|+.+ ++.+..+..+ ..+.+++|.
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 8888888752 1 11223334556777888888888776555554 89999988 7777766665 444444443
No 370
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.49 E-value=0.36 Score=56.16 Aligned_cols=195 Identities=12% Similarity=0.144 Sum_probs=117.4
Q ss_pred CCCEEEEEeCCeEEEEEcCCCceeeeecCCCcc--------EEEEEEc----------------CCCCEEEEEeCCCcEE
Q 002782 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDT--------ITALALS----------------PDDKLLFSSGHSREIR 85 (882)
Q Consensus 30 dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~--------I~~l~~s----------------pd~~~las~~~dg~i~ 85 (882)
++.+.++...+.|.-.|..||+.+-.+...... ...+++- ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 454545545568999999999988666532210 1112221 1345788899999999
Q ss_pred EEECCCCeeEEEeecCCCCEE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEECCCCeEEEEe
Q 002782 86 VWDLSTLKCLRSWKGHDGPAI-------------GMACHP--SGGLLATAGA----------DRKVLVWDVDGGFCTHYF 140 (882)
Q Consensus 86 iwd~~~~~~~~~~~~h~~~V~-------------~l~fs~--~~~~lasg~~----------dg~v~vwd~~~~~~~~~~ 140 (882)
-.|..+|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|+.+|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877642 22210 111122 2345666642 688999999999988776
Q ss_pred ecC---------CC--------cE-EEEEEecCCCccEEEEE------------------eCCCcEEEEECCCCeEEEEe
Q 002782 141 KGH---------KG--------VV-SSILFHPDTDKSLLFSG------------------SDDATVRVWDLLAKKCVATL 184 (882)
Q Consensus 141 ~~h---------~~--------~V-~~l~f~~~~~~~~l~sg------------------s~dg~I~vwd~~~~~~~~~l 184 (882)
..- .+ .+ ..+++.++... ++.+ ...+.|.-.|..+|+..-.+
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~gl--vy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGL--VYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCe--EEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 421 01 11 12233333222 2221 12356777888899888776
Q ss_pred cCcccceE---------EEEEcc-CCC---EEEEEeCCCeEEEEecCCceeeeeec
Q 002782 185 DKHFSRVT---------SMAITS-DGS---TLISAGRDKVVNLWDLRDYSCKLTVP 227 (882)
Q Consensus 185 ~~h~~~v~---------~l~~s~-~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~ 227 (882)
+.....++ -+.+.. +|+ .++.++.+|.+.++|.++++.+...+
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 54222111 122322 553 78999999999999999998776543
No 371
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.46 E-value=0.34 Score=55.22 Aligned_cols=291 Identities=16% Similarity=0.136 Sum_probs=141.7
Q ss_pred cCCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceee----
Q 002782 314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS---- 389 (882)
Q Consensus 314 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~---- 389 (882)
.++...+....+|.+...-+....+............|...-..++.+. +...+.+|+.-|.=.+..+.+....
T Consensus 267 ~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L--~ng~lFvGS~~gdSqLi~L~~e~d~gsy~ 344 (1096)
T KOG1897|consen 267 LQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYL--DNGVLFVGSRFGDSQLIKLNTEPDVGSYV 344 (1096)
T ss_pred CCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcc--cCceEEEeccCCceeeEEccccCCCCchh
Confidence 4455566666777776666554333333333444555566666677776 4558888888777676666543222
Q ss_pred eeeeC--CCcceEEeeeeeec-CCCEEEEEee---cCCeEEEEeCCCce-EEe--eeecccccEEEEE--EccCCCcEEE
Q 002782 390 YVLAG--HSEIVLCLDTCALS-SGKILIVTGS---KDNSVRLWDSESRC-CVG--VGTGHMGAVGAVA--FSKKLQNFLV 458 (882)
Q Consensus 390 ~~~~~--~~~~v~~~~~~~~~-~~~~~l~~~~---~dg~i~iwd~~~~~-~~~--~~~~~~~~v~~v~--~s~~~~~~l~ 458 (882)
..++. .-+++..+.+.-.. .+...+++++ +||++|+....-+- .+. .+.+ -..++.+. +.+.-.++++
T Consensus 345 ~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylv 423 (1096)
T KOG1897|consen 345 VILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLV 423 (1096)
T ss_pred hhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEE
Confidence 11111 22355544321211 1222355554 68899987543221 111 1112 22333333 3332222333
Q ss_pred EeeCCCeEEEEecCCCCCCCC--------C---------------------cccccchhhhhhcCCCeeEEEEcCCCcEE
Q 002782 459 SGSSDHTIKVWSFDGLSDDAE--------Q---------------------PMNLKAKAVVAAHGKDINSLAVAPNDSLV 509 (882)
Q Consensus 459 s~~~dg~i~~wd~~~~~~~~~--------~---------------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 509 (882)
.+-.+.+ ++..+...-+... + ..........-.....++....+.+...+
T Consensus 424 lsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqV 502 (1096)
T KOG1897|consen 424 LSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQV 502 (1096)
T ss_pred EEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecceEE
Confidence 2222211 1111111000000 0 00000000000112334555555566677
Q ss_pred EEEcCCCcEEEEeCCCceeEEEE-ecccCceEEEEEcCCC------CEEEEeeCCCcEEEEe-cCCCceeeEe--ec--C
Q 002782 510 CTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVD------QVVITASGDKTIKIWS-ISDGSCLKTF--EG--H 577 (882)
Q Consensus 510 a~~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~~~------~~l~s~~~d~~i~iwd-~~~~~~~~~~--~~--h 577 (882)
+.++.++.+...++..+...... ......|.|+.++|-| ++++.|..+..+.+-- +.+...+... .+ -
T Consensus 503 vvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~i 582 (1096)
T KOG1897|consen 503 VVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEII 582 (1096)
T ss_pred EEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCcc
Confidence 77777777776676655422111 1134679999999742 3788888776655544 3333332222 11 2
Q ss_pred cCCEEEEEEEeCCCEEEEeecCCeEEEEEcC
Q 002782 578 TSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (882)
Q Consensus 578 ~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 608 (882)
..+|.-..|-.|..+|.++..||.+.-|-+.
T Consensus 583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 583 PRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred chheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 2345555666678999999999988766544
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.0074 Score=57.96 Aligned_cols=197 Identities=13% Similarity=0.150 Sum_probs=118.7
Q ss_pred cccccccccCCceEEccCCCEEEEEeCC------eEEEEEcCCC-ceeeeecCCCccEEEEEEcCCCCEEEEEeC-----
Q 002782 13 EPVLQQFYGGGPLVVSSDGSFIACACGE------SINIVDLSNA-SIKSTIEGGSDTITALALSPDDKLLFSSGH----- 80 (882)
Q Consensus 13 ~~~~~~~y~g~~va~s~dg~~la~~~~~------~I~i~d~~~~-~~~~~l~~~~~~I~~l~~spd~~~las~~~----- 80 (882)
..+-..||+.| .|||||.+|+...++ .|-|||...+ +.+..+..|.-.-..+.+.+||+.|+.+..
T Consensus 109 s~~~RHfyGHG--vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIeth 186 (366)
T COG3490 109 SQEGRHFYGHG--VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETH 186 (366)
T ss_pred cccCceeeccc--ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecc
Confidence 34455677655 689999999988764 5889998755 355677778777788999999999988632
Q ss_pred -------------CCcEEEEECCCCeeEEE--ee--cCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeEEE
Q 002782 81 -------------SREIRVWDLSTLKCLRS--WK--GHDGPAIGMACHPSGGLLATAGADR-----KVLVWDVDGGFCTH 138 (882)
Q Consensus 81 -------------dg~i~iwd~~~~~~~~~--~~--~h~~~V~~l~fs~~~~~lasg~~dg-----~v~vwd~~~~~~~~ 138 (882)
...+.+-|..+|.++.. +. -+.-.|..++..+||+.++-+-..| --.|=-...|+.+.
T Consensus 187 pdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~ 266 (366)
T COG3490 187 PDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLE 266 (366)
T ss_pred cccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCc
Confidence 13455555556655433 22 2456788999999988666543221 11122222333332
Q ss_pred Eeec-------CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCe
Q 002782 139 YFKG-------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211 (882)
Q Consensus 139 ~~~~-------h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~ 211 (882)
.+.- ...-|-+++.+-+ ...+.+|.-..+...+||..+|..+..-.-. .+..+. +...-++..+.+|.
T Consensus 267 ~~~~pee~~~~~anYigsiA~n~~-~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva--~~~~gf~vssg~G~ 341 (366)
T COG3490 267 FLDLPEEQTAAFANYIGSIAANRR-DGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVA--AAKGGFAVSSGQGR 341 (366)
T ss_pred ccCCCHHHHHHHHhhhhheeeccc-CCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccce--eccCceEEecCCce
Confidence 2221 1233556666544 3344555555667889999999877543211 122222 23334556666787
Q ss_pred EEEEe
Q 002782 212 VNLWD 216 (882)
Q Consensus 212 i~vwd 216 (882)
+.++.
T Consensus 342 ~~~~s 346 (366)
T COG3490 342 IIFYS 346 (366)
T ss_pred EEecc
Confidence 87764
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.45 E-value=0.13 Score=52.81 Aligned_cols=147 Identities=20% Similarity=0.226 Sum_probs=94.3
Q ss_pred ccCCCEEEEEeCCeEEEEEcCCC-ceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe--------
Q 002782 28 SSDGSFIACACGESINIVDLSNA-SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-------- 98 (882)
Q Consensus 28 s~dg~~la~~~~~~I~i~d~~~~-~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~-------- 98 (882)
...++.|++|..+.+.+++.... ......+ ...|+.+...|+-+.|++-+. +.++++++........-
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEee--cceEEEEEEecccCEEEEEcC-CccEEEEchhhcccccccccccccc
Confidence 45688899998888999999333 3333332 334999999998888777654 99999998765443311
Q ss_pred ------ecCCCCEEEEE--EcCC-CCEEEEEeCCCcEEEEECCCC-----eEEEEeecCCCcEEEEEEecCCCccEEEEE
Q 002782 99 ------KGHDGPAIGMA--CHPS-GGLLATAGADRKVLVWDVDGG-----FCTHYFKGHKGVVSSILFHPDTDKSLLFSG 164 (882)
Q Consensus 99 ------~~h~~~V~~l~--fs~~-~~~lasg~~dg~v~vwd~~~~-----~~~~~~~~h~~~V~~l~f~~~~~~~~l~sg 164 (882)
-.....+...+ -... +.+|+++ ....|.+|.+... .....+. -...+..++|.+ +. ++.|
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~--~~--i~v~ 154 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG--NK--ICVG 154 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC--CE--EEEE
Confidence 11223454444 1223 3345544 4568999988653 2344444 457889999984 33 6666
Q ss_pred eCCCcEEEEECCCCeEEEEe
Q 002782 165 SDDATVRVWDLLAKKCVATL 184 (882)
Q Consensus 165 s~dg~I~vwd~~~~~~~~~l 184 (882)
..++ ..+.|+.++.....+
T Consensus 155 ~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred eCCc-eEEEecCCCCceEEe
Confidence 6555 888999877654433
No 374
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.44 E-value=0.089 Score=54.00 Aligned_cols=230 Identities=14% Similarity=0.158 Sum_probs=127.2
Q ss_pred eecCCCEEEEEeecCCeEEEEeCC-CceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccc
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 484 (882)
....++. ++.|+.+| +.+++.. ........ +...|..+...++-+ .+++- .|+.+.++++.............
T Consensus 3 ~~~~~~~-L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 3 ADSWGDR-LLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cccCCCE-EEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhcccccccccc
Confidence 3455666 88888888 8888883 23333222 223499999998766 33333 35999999998664322110000
Q ss_pred cc----hhhhhhcCCCeeEEE--EcCC-CcEEEEEcCCCcEEEEeCCCc-----eeEEEEecccCceEEEEEcCCCCEEE
Q 002782 485 KA----KAVVAAHGKDINSLA--VAPN-DSLVCTGSQDRTACVWRLPDL-----VSVVTFRGHKRGIWSVEFSPVDQVVI 552 (882)
Q Consensus 485 ~~----~~~~~~~~~~i~~~~--~s~~-~~~la~~s~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~s~~~~~l~ 552 (882)
.. ..........+...+ -.+. +..|+++. .+.|.+|..... .....+. -...+.+++|. ++.++
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKIC 152 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEE
Confidence 00 001111223344444 1223 34555544 558888877553 3445554 45778899998 66777
Q ss_pred EeeCCCcEEEEecCCCceeeEeecCc-----------CCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEE--EeccC
Q 002782 553 TASGDKTIKIWSISDGSCLKTFEGHT-----------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYDKH 619 (882)
Q Consensus 553 s~~~d~~i~iwd~~~~~~~~~~~~h~-----------~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~--~~~~h 619 (882)
.|.. ....+.|+.++.....+.... .....+.-.+++.+|++. |..-.+-| ..|+..+ .+. -
T Consensus 153 v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~-W 227 (275)
T PF00780_consen 153 VGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVN-KNGEPSRKSTIQ-W 227 (275)
T ss_pred EEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEc-CCCCcCcccEEE-c
Confidence 7765 448888998775543332111 112222223445666643 23223333 3555443 222 2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCEEEEECCCHH
Q 002782 620 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (882)
Q Consensus 620 ~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~~ 653 (882)
.....++++ ...+|+..+.++ |.||++.+++
T Consensus 228 ~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~ 258 (275)
T PF00780_consen 228 SSAPQSVAY--SSPYLIAFSSNS-IEVRSLETGE 258 (275)
T ss_pred CCchhEEEE--ECCEEEEECCCE-EEEEECcCCc
Confidence 334555655 456888777655 9999999874
No 375
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.43 E-value=0.13 Score=56.44 Aligned_cols=239 Identities=12% Similarity=0.105 Sum_probs=129.1
Q ss_pred eecCCCEEEEEeecCC----eEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCC----------CeEEEEec
Q 002782 406 ALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----------HTIKVWSF 471 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d----------g~i~~wd~ 471 (882)
++|+++.++++-+..| .++++|+.+++.+...-... ....+.|.+++..++.+...+ ..|..|.+
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~ 209 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL 209 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence 7899998666655555 49999999997765421111 122399999988666665333 23677777
Q ss_pred CCCCCCCCCcccccchhhhhhcCCC--eeEEEEcCCCcEEEEEcCC----CcEEEEeCCCc----eeEEEEecccCceEE
Q 002782 472 DGLSDDAEQPMNLKAKAVVAAHGKD--INSLAVAPNDSLVCTGSQD----RTACVWRLPDL----VSVVTFRGHKRGIWS 541 (882)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~la~~s~d----g~i~iwd~~~~----~~~~~~~~h~~~v~~ 541 (882)
.+.... ...++...... ...+..++|+++++..+.. ..+.+.++..+ .....+..+...+..
T Consensus 210 gt~~~~--------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 210 GTPQSE--------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp TS-GGG---------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred CCChHh--------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 654211 01122222222 5678899999998764432 34788888764 233444434444443
Q ss_pred EEEcCCCCEEEEee---CCCcEEEEecCCCce---eeEeecCcCCEEEEEEEeCCCEEEEee-cCC--eEEEEEcCCCee
Q 002782 542 VEFSPVDQVVITAS---GDKTIKIWSISDGSC---LKTFEGHTSSVLRASFLTRGAQIVSCG-ADG--LVKLWTVRTGEC 612 (882)
Q Consensus 542 l~~s~~~~~l~s~~---~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg--~i~iwd~~~~~~ 612 (882)
..-...+.+++... .++.|.-.++.+... ...+..|...+.-..+...+.+|+... .++ .|+++++..+..
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 33333444444332 345677777776653 235555666444445555566665544 444 689999984444
Q ss_pred EEEecc-CCCceEEEEEcCCCCEEE-EEeC---CCCEEEEECCCHH
Q 002782 613 IATYDK-HEDKIWALAVGKKTEMFA-TGGS---DALVNLWHDSTAA 653 (882)
Q Consensus 613 ~~~~~~-h~~~v~~l~~s~~~~~l~-s~~~---dg~i~iw~~~~~~ 653 (882)
...+.. -.+.|..+...++++.+. +.++ -+.+..||+.+++
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 444433 334466665555555333 2221 2456677776653
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.38 E-value=0.019 Score=64.66 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=88.0
Q ss_pred CCccEEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCC-------
Q 002782 59 GSDTITALALSPDDKLLFSSG------HSR--EIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGAD------- 123 (882)
Q Consensus 59 ~~~~I~~l~~spd~~~las~~------~dg--~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~d------- 123 (882)
....+.+.++||||+.+|..- .|. .|.+++. .+.. +.+.. ....+.-.|+|||+.|++.+..
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEe
Confidence 334678999999999987654 243 4555554 2222 33322 1237888999999988887532
Q ss_pred -----CcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEE---EECCCCeE-E---EEecC-cccc
Q 002782 124 -----RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV---WDLLAKKC-V---ATLDK-HFSR 190 (882)
Q Consensus 124 -----g~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~v---wd~~~~~~-~---~~l~~-h~~~ 190 (882)
+.+.+.+++.+.... ...+.|..+.|+|||.+..+++ +|.|.+ -....|.. + ..+.. -...
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII---GGKVYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence 233333444433222 2356799999999998744433 467776 44445541 1 11222 2234
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEec
Q 002782 191 VTSMAITSDGSTLISAGRDKVVNLWDL 217 (882)
Q Consensus 191 v~~l~~s~~~~~l~s~~~dg~i~vwd~ 217 (882)
+.++.|..++.++ .+..++.-.+|.+
T Consensus 499 ~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 499 AVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred cccceEecCCEEE-EEecCCCCceEEE
Confidence 6889999998854 5555444445544
No 377
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00091 Score=71.09 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=70.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 002782 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAI-GMACHPSGGLLATAGADRKVLVWDVDGGFCTHY 139 (882)
Q Consensus 61 ~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~-~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~ 139 (882)
..|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++..|..+++ +++|.|||++||+|-.||+|++-|+++|..++.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 467889999999999999999999999987 778888887888887 999999999999999999999999999887665
No 378
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.35 E-value=7.8e-05 Score=78.76 Aligned_cols=203 Identities=16% Similarity=0.281 Sum_probs=131.1
Q ss_pred cceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE--EeeeecccccEEEEEEccCCCcEEEEee----CCCeEEEEe
Q 002782 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGS----SDHTIKVWS 470 (882)
Q Consensus 397 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~s~~~~~~l~s~~----~dg~i~~wd 470 (882)
..+.|++.....+ +.++++|..+|.|-+-......- -....++..+.++++|++-..+.|++|- .|..+.+||
T Consensus 57 qy~kcva~~y~~d-~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGND-RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCc-hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4455665322223 34588899999999887664322 2345678889999999987666777773 467899999
Q ss_pred cCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc-eeEEEEecccCceEEEEEcC-CC
Q 002782 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSP-VD 548 (882)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~-~~ 548 (882)
+...-..+........ ......++++|-.+.+++.+|...+.+.++|++.. .....+ ....+..+..+| .+
T Consensus 136 i~s~ltvPke~~~fs~-----~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSS-----STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSP 208 (783)
T ss_pred cccccCCCcccccccc-----ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCC
Confidence 9876221111111111 13345568888889999999999999999998732 222222 233466677888 66
Q ss_pred CEEEEeeCCCcEEEEec-CCC-ceeeEeecCcC----CEEEEEEEeCCC-EEEEeecC-CeEEEEEcC
Q 002782 549 QVVITASGDKTIKIWSI-SDG-SCLKTFEGHTS----SVLRASFLTRGA-QIVSCGAD-GLVKLWTVR 608 (882)
Q Consensus 549 ~~l~s~~~d~~i~iwd~-~~~-~~~~~~~~h~~----~v~~~~~s~~g~-~l~s~~~d-g~i~iwd~~ 608 (882)
.++++-. ||.|.+||. ..- .++..+....+ .+..++|+|... .+++...| ++|+.+|+.
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 7777665 899999993 222 23333332222 388899998543 55666654 689999875
No 379
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0011 Score=70.54 Aligned_cols=93 Identities=16% Similarity=0.236 Sum_probs=79.2
Q ss_pred CCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceE-EEEEcCCCCEEEEeeCCCcEEEEecCCCceee
Q 002782 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW-SVEFSPVDQVVITASGDKTIKIWSISDGSCLK 572 (882)
Q Consensus 494 ~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 572 (882)
...+.-+.|+|.-.++|++..+|.+.+..+. ...+.++..|..+++ +++|.|||++||.|-.||+|++-|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4467789999999999999999999999988 778888887888888 99999999999999999999999999988776
Q ss_pred Eee-cCcCCEEEEEEE
Q 002782 573 TFE-GHTSSVLRASFL 587 (882)
Q Consensus 573 ~~~-~h~~~v~~~~~s 587 (882)
.+. .....|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 632 244566667775
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.25 E-value=0.0009 Score=44.05 Aligned_cols=39 Identities=38% Similarity=0.728 Sum_probs=35.2
Q ss_pred CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (882)
Q Consensus 92 ~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd 130 (882)
++++..+..|...|.++.|++++.++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456777888999999999999999999999999999996
No 381
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.17 E-value=0.001 Score=43.81 Aligned_cols=39 Identities=33% Similarity=0.669 Sum_probs=34.6
Q ss_pred CceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002782 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD 88 (882)
Q Consensus 50 ~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd 88 (882)
++....+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345677778899999999999999999999999999996
No 382
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.17 E-value=0.0087 Score=68.15 Aligned_cols=145 Identities=11% Similarity=0.089 Sum_probs=100.0
Q ss_pred EEEeecCCeEEEEeCCCceEEeeeeccccc-EEEEEEccC----CCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchh
Q 002782 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVAFSKK----LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488 (882)
Q Consensus 414 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~v~~s~~----~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 488 (882)
+........++-.|++.|+.+.....|... |..++-... ...-.+.|-.+..+..||.+...... . ....
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~---v--~~~~ 571 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL---V--DSQS 571 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce---e--eccc
Confidence 333445678999999999999998887654 655543211 11235677788899999987532100 0 0011
Q ss_pred hhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEec
Q 002782 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (882)
Q Consensus 489 ~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~ 565 (882)
.........+|++-+.+| +||+|+.+|.|++||-........+.+-..+|..|+.+.||++|++.+. ..+.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 112345567888888777 8899999999999995443334456677899999999999999887765 66777774
No 383
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.16 E-value=0.032 Score=46.18 Aligned_cols=102 Identities=24% Similarity=0.231 Sum_probs=69.7
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 002782 63 ITALALSP---DD-KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH 138 (882)
Q Consensus 63 I~~l~~sp---d~-~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~ 138 (882)
|++|++.. || +.|++|+.|..|++|+ ..+.+..+..+ ..|++++-... ..++.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 67777765 33 5799999999999997 44677777754 66777776665 56888889999999975 33344
Q ss_pred EeecCCCcEEEEEEec-CC-CccEEEEEeCCCcEE
Q 002782 139 YFKGHKGVVSSILFHP-DT-DKSLLFSGSDDATVR 171 (882)
Q Consensus 139 ~~~~h~~~V~~l~f~~-~~-~~~~l~sgs~dg~I~ 171 (882)
+.+.. ..+.++++.. ++ ...-|++|-.+|.|-
T Consensus 76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 55533 3356665543 32 123488888888764
No 384
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.14 E-value=0.19 Score=49.18 Aligned_cols=173 Identities=17% Similarity=0.168 Sum_probs=109.8
Q ss_pred eEEccCCCEEEEEeC-C--eEEEEEcCCCceeeeecCC----CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 002782 25 LVVSSDGSFIACACG-E--SINIVDLSNASIKSTIEGG----SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS 97 (882)
Q Consensus 25 va~s~dg~~la~~~~-~--~I~i~d~~~~~~~~~l~~~----~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~ 97 (882)
+.|..||.++-+.+. + .|+.+|+.+|+......-. .+.|+.+ +++...-.-.++...+||..+.+.+.+
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCeEEEEccccceEEEE
Confidence 667677765554443 2 6999999999977554432 2334433 233444556789999999999999998
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC--C---CcEEEEEEecCCCccEEEEEeCCCcEEE
Q 002782 98 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH--K---GVVSSILFHPDTDKSLLFSGSDDATVRV 172 (882)
Q Consensus 98 ~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h--~---~~V~~l~f~~~~~~~~l~sgs~dg~I~v 172 (882)
+.-. +.=..++ .|++.|+.......+.++|..+-+....+.-. . ..++.+.|.. ..+.|=.-....|..
T Consensus 126 ~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~---G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 126 FPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYIN---GKIYANVWQTDRIVR 199 (264)
T ss_dssp EE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEET---TEEEEEETTSSEEEE
T ss_pred EecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEc---CEEEEEeCCCCeEEE
Confidence 8643 4455666 45666777666788999999887776665532 2 2355666662 234555555667888
Q ss_pred EECCCCeEEEEecC------------c---ccceEEEEEccCCCEEEEEe
Q 002782 173 WDLLAKKCVATLDK------------H---FSRVTSMAITSDGSTLISAG 207 (882)
Q Consensus 173 wd~~~~~~~~~l~~------------h---~~~v~~l~~s~~~~~l~s~~ 207 (882)
.|..+|+.+..+.- + .+-...+++.|....|+..|
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 89999998876521 1 24578999998887776665
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0062 Score=69.07 Aligned_cols=109 Identities=18% Similarity=0.293 Sum_probs=80.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC
Q 002782 65 ALALSPDDKLLFSSGHSREIRVWDLSTL-KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH 143 (882)
Q Consensus 65 ~l~~spd~~~las~~~dg~i~iwd~~~~-~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h 143 (882)
.++..-.+..+|.|++.|.+-..|+... .+...-..-.++|++++|+.+|++++.|-.+|.|.+||...++.++.+..|
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 3333334667899999999999988653 222222224689999999999999999999999999999999999999888
Q ss_pred CCcEEEEEEec-CCCccEEEEEeCCCcEEEEEC
Q 002782 144 KGVVSSILFHP-DTDKSLLFSGSDDATVRVWDL 175 (882)
Q Consensus 144 ~~~V~~l~f~~-~~~~~~l~sgs~dg~I~vwd~ 175 (882)
..+.+.+-++- +++...++++...|. +|.+
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 88777766643 122234777777775 6765
No 386
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.08 E-value=0.13 Score=51.69 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=90.6
Q ss_pred CCceEEccCCCEEEEEe--CC--eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeeEE
Q 002782 22 GGPLVVSSDGSFIACAC--GE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD-LSTLKCLR 96 (882)
Q Consensus 22 g~~va~s~dg~~la~~~--~~--~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd-~~~~~~~~ 96 (882)
....++|+||+.+|+.. ++ .+.++..... ....+.+ ..++.-.|++++...++...+...+++. ..++....
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 34799999999988877 44 4555554322 2222333 3788999999988777776666777774 33433221
Q ss_pred -Eeec--CCCCEEEEEEcCCCCEEEEEe---CCCcEEEEECC---CC--eE----EEEeecCCCcEEEEEEecCCCccEE
Q 002782 97 -SWKG--HDGPAIGMACHPSGGLLATAG---ADRKVLVWDVD---GG--FC----THYFKGHKGVVSSILFHPDTDKSLL 161 (882)
Q Consensus 97 -~~~~--h~~~V~~l~fs~~~~~lasg~---~dg~v~vwd~~---~~--~~----~~~~~~h~~~V~~l~f~~~~~~~~l 161 (882)
.... -.+.|+.+.+||||.++|... .++.|.|=-+. .+ .. ..........+..+.|.+++. .++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-L~V 181 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-LVV 181 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-EEE
Confidence 1211 122899999999999988766 34777776553 23 11 111123356789999999864 333
Q ss_pred EEEeCCCcEEE
Q 002782 162 FSGSDDATVRV 172 (882)
Q Consensus 162 ~sgs~dg~I~v 172 (882)
++...++.+..
T Consensus 182 ~~~~~~~~~~~ 192 (253)
T PF10647_consen 182 LGRSAGGPVVR 192 (253)
T ss_pred EeCCCCCceeE
Confidence 33344443443
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.019 Score=60.16 Aligned_cols=147 Identities=12% Similarity=0.133 Sum_probs=103.9
Q ss_pred cCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCc------EEEEeeCCCeEEEEecCCCCCCCCCc
Q 002782 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN------FLVSGSSDHTIKVWSFDGLSDDAEQP 481 (882)
Q Consensus 408 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~------~l~s~~~dg~i~~wd~~~~~~~~~~~ 481 (882)
.+.+.++..+.....++-.|++.|+.+.....+.. |+-+.+.|+... --+.|-.|..|.-||.+-....
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---- 417 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---- 417 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----
Confidence 44555677777778889999999999999887776 777777776531 1345667888888997633210
Q ss_pred ccccchhhhhh----cCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCC
Q 002782 482 MNLKAKAVVAA----HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557 (882)
Q Consensus 482 ~~~~~~~~~~~----~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 557 (882)
....... ......|.+-..+| ++|+||.+|.|++||--.......+.+-..+|..|..+.+|++|+..+.
T Consensus 418 ----kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~- 491 (644)
T KOG2395|consen 418 ----KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK- 491 (644)
T ss_pred ----eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-
Confidence 1111111 23345677766666 8899999999999997444445567788899999999999999887654
Q ss_pred CcEEEEec
Q 002782 558 KTIKIWSI 565 (882)
Q Consensus 558 ~~i~iwd~ 565 (882)
.++.+-++
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 56666664
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0082 Score=68.15 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=73.1
Q ss_pred eEEccCCCEEEEEeCC-eEEEEEcCCCc-eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC
Q 002782 25 LVVSSDGSFIACACGE-SINIVDLSNAS-IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (882)
Q Consensus 25 va~s~dg~~la~~~~~-~I~i~d~~~~~-~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~ 102 (882)
++.--.+.+++++... .|...|..+.- ....=+.-..+|++++|+.||++++.|-.+|.|.+||+..++.++.+..|.
T Consensus 93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC
Confidence 3333344556655544 67777765431 111112235689999999999999999999999999999999999998877
Q ss_pred CCEEEEEE---cCCCCEEEEEeCCCcEEEEEC
Q 002782 103 GPAIGMAC---HPSGGLLATAGADRKVLVWDV 131 (882)
Q Consensus 103 ~~V~~l~f---s~~~~~lasg~~dg~v~vwd~ 131 (882)
.|.+.+-+ ..++..+.++...|. +|.+
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 77665543 445556777766665 6665
No 389
>PRK10115 protease 2; Provisional
Probab=97.01 E-value=1.1 Score=52.22 Aligned_cols=194 Identities=11% Similarity=0.086 Sum_probs=105.8
Q ss_pred ccCCceEEccCCCEEEEEeCC------eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCC------CcEEEE
Q 002782 20 YGGGPLVVSSDGSFIACACGE------SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS------REIRVW 87 (882)
Q Consensus 20 y~g~~va~s~dg~~la~~~~~------~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~d------g~i~iw 87 (882)
|.-+.+.+||||++|+++.+. .|.+.|+.+|+.+...-.+.. ..++|++|++.|+....+ ..|..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 333467899999999998743 499999999874322211221 459999999877655332 368888
Q ss_pred ECCCC--eeEEEeecCCCCEE-EEEEcCCCCEEEEEe---CCCcEEEEECC--CCeEEEEeecCCCcEEEEEEecCCCcc
Q 002782 88 DLSTL--KCLRSWKGHDGPAI-GMACHPSGGLLATAG---ADRKVLVWDVD--GGFCTHYFKGHKGVVSSILFHPDTDKS 159 (882)
Q Consensus 88 d~~~~--~~~~~~~~h~~~V~-~l~fs~~~~~lasg~---~dg~v~vwd~~--~~~~~~~~~~h~~~V~~l~f~~~~~~~ 159 (882)
++.++ +-...+........ .+..+.++++++..+ .++.+.+++.. ++.....+..-.+....+. +. ++..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-QHRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-CCEE
Confidence 99888 44444444333333 344455888776544 34678899852 3332222221222222222 22 2333
Q ss_pred EEEEEe--CCCcEEEEECCCCeEEEEecCc-c-cceEEEEEccCCCEEEEEeCCCeEEEEecC
Q 002782 160 LLFSGS--DDATVRVWDLLAKKCVATLDKH-F-SRVTSMAITSDGSTLISAGRDKVVNLWDLR 218 (882)
Q Consensus 160 ~l~sgs--~dg~I~vwd~~~~~~~~~l~~h-~-~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~ 218 (882)
++.+-. ....|...++........+..+ . ..+..+.++ .+..+++...+|.-+++-+.
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 333322 2223444455421222333334 2 367778777 33455555566665555443
No 390
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.97 E-value=0.25 Score=46.47 Aligned_cols=136 Identities=13% Similarity=0.035 Sum_probs=83.9
Q ss_pred CCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccC--------ceEEEEEcCCCCEE-EEeeCCCcEEEEe
Q 002782 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--------GIWSVEFSPVDQVV-ITASGDKTIKIWS 564 (882)
Q Consensus 494 ~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~--------~v~~l~~s~~~~~l-~s~~~d~~i~iwd 564 (882)
....+.-..+|+|++++-.-.|-. -.+....+.+..-+.+|.- --..++|+.+.+.+ ++-+.+-+|.-||
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred hcccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 345667788999999542222211 1222222333333333332 22467888776654 4456677887787
Q ss_pred --cCCCce-----eeEeec----CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcC
Q 002782 565 --ISDGSC-----LKTFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK 630 (882)
Q Consensus 565 --~~~~~~-----~~~~~~----h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~ 630 (882)
..+|.. +..++. ..-..-.++...+|...+++-..|+|...|..+|+.+.++.-+...|++++|--
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 555533 222221 111122345566788888888889999999999999999998899999999953
No 391
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.22 Score=48.34 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=65.0
Q ss_pred ceEEccCCCE-EEEEe--CCeEEEEEcCCCceeeeecCCCc--cEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC-
Q 002782 24 PLVVSSDGSF-IACAC--GESINIVDLSNASIKSTIEGGSD--TITALALSPDDKLLFSSGH-----SREIRVWDLSTL- 92 (882)
Q Consensus 24 ~va~s~dg~~-la~~~--~~~I~i~d~~~~~~~~~l~~~~~--~I~~l~~spd~~~las~~~-----dg~i~iwd~~~~- 92 (882)
-++++|-... ++++- +.--.++|..+++...++...++ ---.=.|||||.+|...-. .|.|=|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 4666665543 22222 22467888887765554432111 1112369999999987633 478999998754
Q ss_pred eeEEEeecCCCCEEEEEEcCCCCEEEEEe
Q 002782 93 KCLRSWKGHDGPAIGMACHPSGGLLATAG 121 (882)
Q Consensus 93 ~~~~~~~~h~~~V~~l~fs~~~~~lasg~ 121 (882)
..+..|..|.-.-..+.+.+||+.|+.+.
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeC
Confidence 56677888888888999999999988763
No 392
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.018 Score=60.34 Aligned_cols=143 Identities=18% Similarity=0.249 Sum_probs=101.3
Q ss_pred CCCCEEE-EEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCE--E-----EEEeCCCcEEEEECCC-Ce-EEEE
Q 002782 70 PDDKLLF-SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGL--L-----ATAGADRKVLVWDVDG-GF-CTHY 139 (882)
Q Consensus 70 pd~~~la-s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~--l-----asg~~dg~v~vwd~~~-~~-~~~~ 139 (882)
.+.++|. ++.....|+--|++.|+.+..|+-|.. |..+.+.|+.+. | +.|-.|..|+-||..- +. .+..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3445544 455567789999999999999998876 888888887652 2 3455788899999852 22 2222
Q ss_pred eecC----CCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEE
Q 002782 140 FKGH----KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215 (882)
Q Consensus 140 ~~~h----~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vw 215 (882)
..+| .....|.+-..+| +++.||.+|.|++||--.......+++-..+|..+..+.+|++++..+ +..+.+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG---~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi 497 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG---YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLI 497 (644)
T ss_pred eeccccccccccceeeecCCc---eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEE
Confidence 2333 2345566555543 499999999999999743344455678888999999999999988777 4556665
Q ss_pred ec
Q 002782 216 DL 217 (882)
Q Consensus 216 d~ 217 (882)
++
T Consensus 498 ~t 499 (644)
T KOG2395|consen 498 DT 499 (644)
T ss_pred EE
Confidence 54
No 393
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.84 E-value=0.051 Score=45.02 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=65.4
Q ss_pred EEEEEEc---cCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEE
Q 002782 444 VGAVAFS---KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (882)
Q Consensus 444 v~~v~~s---~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~i 520 (882)
|+++++. .+|.+-|++|+.|..|++|+-... .........|++++-... ..++.+..+|+|-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~-------------~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI-------------VAEITETDKVTSLCSLGG-GRFAYALANGTVGV 67 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE-------------EEEEecccceEEEEEcCC-CEEEEEecCCEEEE
Confidence 4555554 466678999999999999985421 111223456777777666 56888999999999
Q ss_pred EeCCCceeEEEEecccCceEEEEEcCC---C-CEEEEeeCCCcEE
Q 002782 521 WRLPDLVSVVTFRGHKRGIWSVEFSPV---D-QVVITASGDKTIK 561 (882)
Q Consensus 521 wd~~~~~~~~~~~~h~~~v~~l~~s~~---~-~~l~s~~~d~~i~ 561 (882)
|+-. ..+-..+. +..+.++++..- | .-|++|-.+|.|-
T Consensus 68 Y~~~--~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 68 YDRS--QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EeCc--ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9752 23334443 333666655432 2 2688888888764
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.80 E-value=0.0018 Score=60.28 Aligned_cols=141 Identities=15% Similarity=0.151 Sum_probs=83.8
Q ss_pred EEEeCCCcEEEEECCCCeeEE-EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCcEEEEEEe
Q 002782 76 FSSGHSREIRVWDLSTLKCLR-SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFH 153 (882)
Q Consensus 76 as~~~dg~i~iwd~~~~~~~~-~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~f~ 153 (882)
..-+.+|.|+-+++...+.-. .-.-|... ...-.-+.-++.|+.+|.|.+|++... ...-.+..-...|.++--.
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred ccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 334566777777664432111 11112222 112223456888999999999998621 1111111112233333222
Q ss_pred cCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcc-cceEEEEEccCCCEEEEE--eCCCeEEEEecCCc
Q 002782 154 PDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLISA--GRDKVVNLWDLRDY 220 (882)
Q Consensus 154 ~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~-~~v~~l~~s~~~~~l~s~--~~dg~i~vwd~~~~ 220 (882)
-+ ...+..+++.||.|+.|+..-++.+.....|. .++..+..+..++++.++ +.|..++.|++...
T Consensus 111 ~~-~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 111 GR-DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cc-ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 22 33468899999999999999999888887777 466666666666677777 77777777777643
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.79 E-value=0.33 Score=50.78 Aligned_cols=191 Identities=15% Similarity=0.193 Sum_probs=101.1
Q ss_pred CCCEEEEEeCC--eEEEEEcCCC----ceeeeecC---CC----ccEEEEEEcCCCCEEEEE--eC----CCcEEEEECC
Q 002782 30 DGSFIACACGE--SINIVDLSNA----SIKSTIEG---GS----DTITALALSPDDKLLFSS--GH----SREIRVWDLS 90 (882)
Q Consensus 30 dg~~la~~~~~--~I~i~d~~~~----~~~~~l~~---~~----~~I~~l~~spd~~~las~--~~----dg~i~iwd~~ 90 (882)
+.++|+.++-. .|.|+|+.+. ++.+.++. +. ..-..+-.-|+|+.++++ .. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 56788888854 7999998743 45555553 11 112233344799888875 22 3579999999
Q ss_pred CCeeEEEeecCCC---CEEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCeEEEEeecCC--C
Q 002782 91 TLKCLRSWKGHDG---PAIGMACHPSGGLLATAGA--------------------DRKVLVWDVDGGFCTHYFKGHK--G 145 (882)
Q Consensus 91 ~~~~~~~~~~h~~---~V~~l~fs~~~~~lasg~~--------------------dg~v~vwd~~~~~~~~~~~~h~--~ 145 (882)
+.+....+..... --..+.+.|..+.++|... ..++.+||+.+.+.++++.--. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 9998888875433 3356778898888888642 4579999999999999887332 3
Q ss_pred cEEEEEEecCCCccEEEEE-eCCCcEEEEEC-CCCe----EEEEecCc-----------------ccceEEEEEccCCCE
Q 002782 146 VVSSILFHPDTDKSLLFSG-SDDATVRVWDL-LAKK----CVATLDKH-----------------FSRVTSMAITSDGST 202 (882)
Q Consensus 146 ~V~~l~f~~~~~~~~l~sg-s~dg~I~vwd~-~~~~----~~~~l~~h-----------------~~~v~~l~~s~~~~~ 202 (882)
....+.|..+.....-++| .-.++|..|-- ..++ .+..+... ..-|+.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 4678888766544333333 34445555432 3332 12222111 245799999999999
Q ss_pred EEEEe-CCCeEEEEecCCc
Q 002782 203 LISAG-RDKVVNLWDLRDY 220 (882)
Q Consensus 203 l~s~~-~dg~i~vwd~~~~ 220 (882)
|+.++ ..|.|+.||+.+.
T Consensus 326 LYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEETTTTEEEEEE-SST
T ss_pred EEEEcccCCcEEEEecCCC
Confidence 98776 6899999999864
No 396
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.77 E-value=1.7 Score=50.72 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=70.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc--------EEEEEEecC--------------CCccEEEEEeCCCcEE
Q 002782 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV--------VSSILFHPD--------------TDKSLLFSGSDDATVR 171 (882)
Q Consensus 114 ~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~--------V~~l~f~~~--------------~~~~~l~sgs~dg~I~ 171 (882)
+..|..++.++.|.-.|..+|+.+.++...... ...+++... .....++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777888899999999999988877532211 112333211 1123588889999999
Q ss_pred EEECCCCeEEEEecCcccceE-------------EEEEcc--CCCEEEEEeC----------CCeEEEEecCCceeeeee
Q 002782 172 VWDLLAKKCVATLDKHFSRVT-------------SMAITS--DGSTLISAGR----------DKVVNLWDLRDYSCKLTV 226 (882)
Q Consensus 172 vwd~~~~~~~~~l~~h~~~v~-------------~l~~s~--~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~ 226 (882)
-.|..+|+....+... +.|. .+.-.| .+..++.++. +|.|+-+|..+++.....
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999988765321 1110 011111 1335555542 577888888888776655
Q ss_pred cC
Q 002782 227 PT 228 (882)
Q Consensus 227 ~~ 228 (882)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 43
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.76 E-value=0.51 Score=48.07 Aligned_cols=152 Identities=15% Similarity=0.157 Sum_probs=80.1
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeE
Q 002782 58 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV-DGGFC 136 (882)
Q Consensus 58 ~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~-~~~~~ 136 (882)
+-...+..+..++||++++++.....+.-||--...-...-+.....|.+|.|+|++.+.+.+ ..|.|+.=+. .....
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 345678899999999999998776666788754322222223346899999999998876654 7788888772 22221
Q ss_pred EEE----eecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEec---CcccceEEEEEccCCCEEEEEeCC
Q 002782 137 THY----FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRD 209 (882)
Q Consensus 137 ~~~----~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~---~h~~~v~~l~~s~~~~~l~s~~~d 209 (882)
-.. +..-.-.+..++|.++.. +.+++..|.+ +.....|+.-..-+ .-.+.+..+.|.++. .-+..+.+
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~---~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG~~ 295 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNE---IWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLGQD 295 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS----EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEEE-ST
T ss_pred cccccCCcccCceeeEEEEecCCCC---EEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCC-ceEEECCC
Confidence 111 111223478999998744 4455555644 34445555443332 334578888897654 45556678
Q ss_pred CeEEEE
Q 002782 210 KVVNLW 215 (882)
Q Consensus 210 g~i~vw 215 (882)
|.|.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 877655
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.72 E-value=0.003 Score=58.82 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=64.2
Q ss_pred CCcEEEEEcCCCcEEEEeCCCceeEEE-EecccCce-EEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc-CCE
Q 002782 505 NDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGI-WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSV 581 (882)
Q Consensus 505 ~~~~la~~s~dg~i~iwd~~~~~~~~~-~~~h~~~v-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v 581 (882)
-+.-+++|+.+|.|++|.......... +..-...| ..+.-..++.+..+++.||.|+.|++..++.+.....|. .++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 456788999999999998762211111 11111222 223333456688999999999999999888877776676 444
Q ss_pred EEEEEEeCCCEEEEe--ecCCeEEEEEcC
Q 002782 582 LRASFLTRGAQIVSC--GADGLVKLWTVR 608 (882)
Q Consensus 582 ~~~~~s~~g~~l~s~--~~dg~i~iwd~~ 608 (882)
.....+..+..++++ |.|..++.|++.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchh
Confidence 444444444555555 555555555553
No 399
>PHA02713 hypothetical protein; Provisional
Probab=96.72 E-value=0.15 Score=57.85 Aligned_cols=225 Identities=14% Similarity=0.124 Sum_probs=107.2
Q ss_pred cEEEEeCCCceeeeeeeCCCcce-EEeeeeeecCCCEEEEEeecC------CeEEEEeCCCceEEeeeecccccEEEEEE
Q 002782 377 QVQVYDLSSMSCSYVLAGHSEIV-LCLDTCALSSGKILIVTGSKD------NSVRLWDSESRCCVGVGTGHMGAVGAVAF 449 (882)
Q Consensus 377 ~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~ 449 (882)
.+..||..+......-.-..... .+. ...++.. .+.|+.+ ..+..||..+........-....-...+.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~---a~l~~~I-YviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYAS---AIVDNEI-IIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEE---EEECCEE-EEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE
Confidence 46677777665332211111111 112 2234444 6666643 34777888776543222111111111111
Q ss_pred ccCCCcEEEEeeCCC-----eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCC--------
Q 002782 450 SKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-------- 516 (882)
Q Consensus 450 s~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg-------- 516 (882)
.-++. +.+.||.++ ++..||..+.. +...............+ .-+|++.+.|+.++
T Consensus 349 ~~~g~-IYviGG~~~~~~~~sve~Ydp~~~~--------W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~ 417 (557)
T PHA02713 349 VIDDT-IYAIGGQNGTNVERTIECYTMGDDK--------WKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVH 417 (557)
T ss_pred EECCE-EEEECCcCCCCCCceEEEEECCCCe--------EEECCCCCcccccccEE--EECCEEEEEeCCCccccccccc
Confidence 22333 667777653 47778866431 11111111111111112 23688888887653
Q ss_pred ---------------cEEEEeCCCceeE--EEEecccCceEEEEEcCCCCEEEEeeCC------CcEEEEecCC-C--ce
Q 002782 517 ---------------TACVWRLPDLVSV--VTFRGHKRGIWSVEFSPVDQVVITASGD------KTIKIWSISD-G--SC 570 (882)
Q Consensus 517 ---------------~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~d------~~i~iwd~~~-~--~~ 570 (882)
.+..||..+.+-. ..+....... ++ ..-++++.+.|+.+ ..+..||..+ . +.
T Consensus 418 ~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~ 495 (557)
T PHA02713 418 HMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL 495 (557)
T ss_pred ccccccccccccccceEEEECCCCCeEeecCCCCcccccC-cE-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE
Confidence 4667777665321 1111111111 12 22347777777654 2467888876 3 33
Q ss_pred eeEeecCcCCEEEEEEEeCCCEEEEeecCC--eEEEEEcCCCeeEEEeccCC
Q 002782 571 LKTFEGHTSSVLRASFLTRGAQIVSCGADG--LVKLWTVRTGECIATYDKHE 620 (882)
Q Consensus 571 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg--~i~iwd~~~~~~~~~~~~h~ 620 (882)
+..+.........+ .-+|+..++||.|| .+..||+.+++....-..|.
T Consensus 496 ~~~m~~~r~~~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 496 ITTTESRLSALHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred ccccCcccccceeE--EECCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 34443222222112 23678888999888 77888887776554444444
No 400
>PHA02713 hypothetical protein; Provisional
Probab=96.72 E-value=0.12 Score=58.69 Aligned_cols=144 Identities=11% Similarity=0.092 Sum_probs=77.3
Q ss_pred cCCCcEEEEEcCCC-----cEEEEeCCCceeE--EEEecccCceEEEEEcCCCCEEEEeeCCC-----------------
Q 002782 503 APNDSLVCTGSQDR-----TACVWRLPDLVSV--VTFRGHKRGIWSVEFSPVDQVVITASGDK----------------- 558 (882)
Q Consensus 503 s~~~~~la~~s~dg-----~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~d~----------------- 558 (882)
.-+|++.+.|+.++ ++..||..+.+-. ..+.........+. -+|.+.+.|+.++
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccc
Confidence 34778888888764 4788888765321 11111111112222 2577777777553
Q ss_pred ------cEEEEecCCCce--eeEeecCcCCEEEEEEEeCCCEEEEeecCC------eEEEEEcCC-Ce--eEEEeccCCC
Q 002782 559 ------TIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADG------LVKLWTVRT-GE--CIATYDKHED 621 (882)
Q Consensus 559 ------~i~iwd~~~~~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg------~i~iwd~~~-~~--~~~~~~~h~~ 621 (882)
.+..||..+.+- +..+. ..........-+|+..+.||.++ .+..||..+ .+ .+..+..+..
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 467788765532 22221 11111122234566666676542 467899886 44 3344443333
Q ss_pred ceEEEEEcCCCCEEEEEeCCC--CEEEEECCCH
Q 002782 622 KIWALAVGKKTEMFATGGSDA--LVNLWHDSTA 652 (882)
Q Consensus 622 ~v~~l~~s~~~~~l~s~~~dg--~i~iw~~~~~ 652 (882)
......+ +|...++||.|| .+..||..+.
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 3333333 888889999888 5556665554
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.38 Score=47.25 Aligned_cols=176 Identities=14% Similarity=0.160 Sum_probs=113.0
Q ss_pred cCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeecCcc--eeeEEEecCCCCCcccccccchhhhhhccccc
Q 002782 185 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE--MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 262 (882)
Q Consensus 185 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (882)
.+-...+.++.|+|+.+.|++......-.+|=...++.+.++|... ..+.+..+.++
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n--------------------- 140 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN--------------------- 140 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC---------------------
Confidence 4455669999999999999999988888888888888888887653 34444444443
Q ss_pred cceEEEEEcCCCeEEEEECCCc-eeeeecCCceeeeeccC-CcCcceeEEEEccCCCcEEEEEeCCeEEEEEeccccccc
Q 002782 263 LEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMD-DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK 340 (882)
Q Consensus 263 ~~~~~~~~~~~g~v~~w~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 340 (882)
.+.++--.++.+.++.++.. ........ ....... ....++-.+++.|.+..+++.-...-+.+|.....+...
T Consensus 141 --~fvi~dER~~~l~~~~vd~~t~~~~~~~~--~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 141 --QFVIVDERDRALYLFTVDADTTVISAKVQ--KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred --EEEEEehhcceEEEEEEcCCccEEeccce--EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc
Confidence 24444455666776666555 12111111 1222222 226789999999999999999999999888877544211
Q ss_pred ---ceeeeeeeecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCCC
Q 002782 341 ---MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS 385 (882)
Q Consensus 341 ---~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 385 (882)
..........-.-..+.++.|.+..+.+++.+..++.+.-.|...
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 011111111112345667777777777777777777777666543
No 402
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.48 E-value=0.73 Score=46.21 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=89.5
Q ss_pred cEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEe
Q 002782 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (882)
Q Consensus 443 ~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd 522 (882)
.+.+.++++++..+.+....++.-.+|-...... ..... ....+....|++++...+....+....++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~---------~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP---------VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc---------ceeec--cCCccccccccCCCCEEEEEcCCCceEEEE
Confidence 6888999999986555553344444444332211 11111 233678889999988888877777777774
Q ss_pred -CCCceeE-EEEecc-c-CceEEEEEcCCCCEEEEee---CCCcEEEEecC---CC------ceeeEeecCcCCEEEEEE
Q 002782 523 -LPDLVSV-VTFRGH-K-RGIWSVEFSPVDQVVITAS---GDKTIKIWSIS---DG------SCLKTFEGHTSSVLRASF 586 (882)
Q Consensus 523 -~~~~~~~-~~~~~h-~-~~v~~l~~s~~~~~l~s~~---~d~~i~iwd~~---~~------~~~~~~~~h~~~v~~~~~ 586 (882)
..++... ..+... . ..|.++.+||||..++... .++.|.+--+. .+ ..+.........++.+.|
T Consensus 94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 94 DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 2333221 112211 1 2899999999999887765 35777776543 23 111222233468899999
Q ss_pred EeCCCEEEEeecCC
Q 002782 587 LTRGAQIVSCGADG 600 (882)
Q Consensus 587 s~~g~~l~s~~~dg 600 (882)
.+++.+++.+...+
T Consensus 174 ~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 174 SDDSTLVVLGRSAG 187 (253)
T ss_pred cCCCEEEEEeCCCC
Confidence 99998877766544
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.36 E-value=1.9 Score=46.21 Aligned_cols=144 Identities=9% Similarity=0.143 Sum_probs=82.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCe-----EEEEeecCCCcEEEEEEe---cCCCccEEEEEeCCCcEEEEECCC--Ce---
Q 002782 113 SGGLLATAGADRKVLVWDVDGGF-----CTHYFKGHKGVVSSILFH---PDTDKSLLFSGSDDATVRVWDLLA--KK--- 179 (882)
Q Consensus 113 ~~~~lasg~~dg~v~vwd~~~~~-----~~~~~~~h~~~V~~l~f~---~~~~~~~l~sgs~dg~I~vwd~~~--~~--- 179 (882)
+...+++|+..|.++|++...+. .+.. ..-..+|..+..- +..+...||. -.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34589999999999999995432 1111 1245677777653 3323233443 5556788887721 11
Q ss_pred ----EEEEecCccc--ceEEEEEcc----C-CCEEEEEeCCCeEEEEecCCceeeeeecCcceeeEEEecCCCCCccccc
Q 002782 180 ----CVATLDKHFS--RVTSMAITS----D-GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFL 248 (882)
Q Consensus 180 ----~~~~l~~h~~--~v~~l~~s~----~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (882)
.+..+..|.- ....+++-| . ..++..-+.||.+.+++-+.......++..-....+.+.+...
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tD------ 187 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTD------ 187 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCC------
Confidence 2222223322 223333322 2 3567788999999999988766555555544444444444333
Q ss_pred ccchhhhhhccccccceEEEEEcCCCeEEEEEC
Q 002782 249 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281 (882)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w~~ 281 (882)
.|++++....+..|..
T Consensus 188 -----------------sfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 188 -----------------SFVTASSSWTLECYKY 203 (418)
T ss_pred -----------------EEEEecCceeEEEecH
Confidence 5666666666666654
No 404
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.34 E-value=0.19 Score=47.13 Aligned_cols=130 Identities=17% Similarity=0.141 Sum_probs=83.4
Q ss_pred EEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCC--------ccEEEEEEcCCCCEEEEE-eCCCcEEEEE--CCCCe-
Q 002782 26 VVSSDGSFIACACGESINIVDLSNASIKSTIEGGS--------DTITALALSPDDKLLFSS-GHSREIRVWD--LSTLK- 93 (882)
Q Consensus 26 a~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~--------~~I~~l~~spd~~~las~-~~dg~i~iwd--~~~~~- 93 (882)
-++|+|++.+-.-.+.--++....|++..-+.+|. .--..++|+.|.+.+... +.+-.|.-|| .++|.
T Consensus 115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~ 194 (310)
T KOG4499|consen 115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL 194 (310)
T ss_pred ccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccc
Confidence 35799998443333322233333444433333332 222578898888766544 5577787787 55553
Q ss_pred ----eEEEeecC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecC
Q 002782 94 ----CLRSWKGH----DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD 155 (882)
Q Consensus 94 ----~~~~~~~h----~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~ 155 (882)
.+..++.. .-.--.++.+.+|.+.++.-..++|.-.|..+|+.+..++-....|+++||--.
T Consensus 195 snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 195 SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 33333221 111234666788888888778899999999999999999988999999999643
No 405
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.26 E-value=1.6 Score=50.56 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=53.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEE
Q 002782 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 181 (882)
Q Consensus 103 ~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~-~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~ 181 (882)
-.|..+.++|+|++||..|..| |.|-.+.. ......+.+....|.|-.+.-+ .. ++.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~--~~~------------------ 142 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ER--FFT------------------ 142 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hh--hcc------------------
Confidence 4688899999999999988755 44444421 1111122322333333333221 11 111
Q ss_pred EEecCcccceEEEEEccC---CCEEEEEeCCCeEEEEecCCc
Q 002782 182 ATLDKHFSRVTSMAITSD---GSTLISAGRDKVVNLWDLRDY 220 (882)
Q Consensus 182 ~~l~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~vwd~~~~ 220 (882)
..+...|..+.|+|. +..|+.-..|+++++||+...
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 112345667777775 477888888888888888643
No 406
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=1.2 Score=43.90 Aligned_cols=163 Identities=14% Similarity=0.178 Sum_probs=111.4
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 002782 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH-DGPAIGMACHPSGGLLATAGADRKVLVWDVDGG 134 (882)
Q Consensus 56 l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h-~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~ 134 (882)
+.|-...|+++.|+|+.+.|++....+.-.||=-.+|..++++.-. -..--.+.+..+|+++++--.++.+.++.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4455566999999999999999988888888888899999987531 233456788888988888778888988888655
Q ss_pred eEEEEee---------cC-CCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe---EEEEecCc-------ccceEEE
Q 002782 135 FCTHYFK---------GH-KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---CVATLDKH-------FSRVTSM 194 (882)
Q Consensus 135 ~~~~~~~---------~h-~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~---~~~~l~~h-------~~~v~~l 194 (882)
..+..++ .+ +.....++|.|.... |+.+-.-.-+.||.+.... .+.....+ -..|.++
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~--l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR--LFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCce--EEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 3222111 12 566889999998766 6667776667777654322 11111111 2357788
Q ss_pred EEccC-CCEEEEEeCCCeEEEEecCCc
Q 002782 195 AITSD-GSTLISAGRDKVVNLWDLRDY 220 (882)
Q Consensus 195 ~~s~~-~~~l~s~~~dg~i~vwd~~~~ 220 (882)
.|.+. +..|+-+..++.+...|....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCC
Confidence 88864 455666667777777776543
No 407
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.12 E-value=0.46 Score=53.77 Aligned_cols=224 Identities=15% Similarity=0.149 Sum_probs=113.6
Q ss_pred EEEEEeecC------CeEEEEeCCCceEEeeeec-ccccEEEEEEccCCCcEEEEeeCC------CeEEEEecCCCCCCC
Q 002782 412 ILIVTGSKD------NSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSD------HTIKVWSFDGLSDDA 478 (882)
Q Consensus 412 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~~~~v~~v~~s~~~~~~l~s~~~d------g~i~~wd~~~~~~~~ 478 (882)
.+++.|+.+ ..+..+|..++.......- ....-.++++..+ .+.++|+.| .++..||.....
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~--- 360 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQ--- 360 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCc---
Confidence 346666665 3677888887744333221 1122333444433 378888888 345666665432
Q ss_pred CCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCc-----EEEEeCCCcee--EEEEecccCceEEEEEcCCCCEE
Q 002782 479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-----ACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVV 551 (882)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~-----i~iwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l 551 (882)
+............. -...-+|.+.|+|+.||. +..||..+.+- +..+.........+. -+|.+.
T Consensus 361 -----W~~~a~M~~~R~~~--~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iY 431 (571)
T KOG4441|consen 361 -----WTPVAPMNTKRSDF--GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLY 431 (571)
T ss_pred -----eeccCCccCccccc--eeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEE
Confidence 11111111111111 111237889999999874 66777665432 111111111122222 247788
Q ss_pred EEeeCCC------cEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCC-----eEEEEEcCCCeeEEE--ecc
Q 002782 552 ITASGDK------TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGECIAT--YDK 618 (882)
Q Consensus 552 ~s~~~d~------~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-----~i~iwd~~~~~~~~~--~~~ 618 (882)
++|+.++ ++..||..++.-...-.........-.-.-++...+.||.|| .|..||..+.+.... ...
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 8887554 467788766543221111111111112234667778888776 377788877664433 222
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCC-----EEEEECCC
Q 002782 619 HEDKIWALAVGKKTEMFATGGSDAL-----VNLWHDST 651 (882)
Q Consensus 619 h~~~v~~l~~s~~~~~l~s~~~dg~-----i~iw~~~~ 651 (882)
....+....+ ++...++||.||. |..||..+
T Consensus 512 ~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 512 PRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 2333333333 6777788887765 45555444
No 408
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=96.06 E-value=3.5 Score=46.48 Aligned_cols=402 Identities=13% Similarity=0.152 Sum_probs=167.8
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEecCCc-------eeeeeecC--cceeeEEEecCC--CCCcccccccchhhhhhc
Q 002782 190 RVTSMAITSDGSTLISAGRDKVVNLWDLRDY-------SCKLTVPT--YEMVEAVCAIPP--GSAFDSFLSSYNQQTIKK 258 (882)
Q Consensus 190 ~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 258 (882)
.-..++.+|.|+.++.+..+|.+.++.+... ......+. ...+..++|..+ +....
T Consensus 45 ~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p------------- 111 (504)
T PF10433_consen 45 PGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNP------------- 111 (504)
T ss_dssp T--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS--------------
T ss_pred CCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCc-------------
Confidence 4567889999999999999999999998871 11111222 445666777651 11100
Q ss_pred cccccceEEEEEcCCC--eEEE--EECCCceeeeecCCceeeeeccCCcCcceeEEEEccCCCcEEEEEeCCeEEEEEec
Q 002782 259 KRRSLEIHFITVGERG--IVRM--WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334 (882)
Q Consensus 259 ~~~~~~~~~~~~~~~g--~v~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 334 (882)
...++.....+ .+.. |+...+.............. .........+...|.....+.+..++.+.+-+..
T Consensus 112 -----~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l--~~~~~~p~~LIPlp~~~ggllV~~~~~i~y~~~~ 184 (504)
T PF10433_consen 112 -----TLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRL--PNEDELPSFLIPLPNPPGGLLVGGENIIIYKNHL 184 (504)
T ss_dssp -----EEEEEEEETT-EEEEEEEE--------EETTTTEEEE----EEEE-TTEEEEEE-TTT-SEEEEESSEEEEEE--
T ss_pred -----eEEEEEEEecccceeEEEeeecccccceeeeeccccccc--cccCCCccEEEEcCCCCcEEEEECCEEEEEeccc
Confidence 00111111211 2223 44443322222211111000 0000011334444555555555555555554322
Q ss_pred ccccccceeeeeeee-cccCCceEEEEE------eCCCCcEEEEEEcCCcEEEEeCCCcee--eeeeeCC-CcceEEeee
Q 002782 335 EVPEKKMELILSKRL-VGYNEEILDLKF------LGEEEQYLAVATNIEQVQVYDLSSMSC--SYVLAGH-SEIVLCLDT 404 (882)
Q Consensus 335 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~------~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~-~~~v~~~~~ 404 (882)
..+... ........ .....-+..... ...+...+..+..+|.+....+..... ....-+. .....++.
T Consensus 185 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~- 262 (504)
T PF10433_consen 185 IGSGDY-SFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLT- 262 (504)
T ss_dssp ----TT-EEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEE-
T ss_pred cccccc-ccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEE-
Confidence 111000 00000000 111122222222 345677899999999999987765331 1122222 44445554
Q ss_pred eeecCCCEEEEEeec--CCeEEEEeCCCceEEeeeecccccEEEEEEccC---CCc------EEEEe---eCCCeEEEEe
Q 002782 405 CALSSGKILIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK---LQN------FLVSG---SSDHTIKVWS 470 (882)
Q Consensus 405 ~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~---~~~------~l~s~---~~dg~i~~wd 470 (882)
...++..+++.|+. |+.+.-|....-+.+..+. .-++|..+++.+. +.. .++++ +.+|.+++..
T Consensus 263 -~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 263 -YLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp -EESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred -EEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 44555223566654 4555555544444444443 4467888888532 221 23443 3578888875
Q ss_pred cCCCCCCCCCccccc-chhhhhhc--CCCeeEEEEcC-CCcEEEEEcCCCcEEEEeCC---CceeEEEEe--cc---cCc
Q 002782 471 FDGLSDDAEQPMNLK-AKAVVAAH--GKDINSLAVAP-NDSLVCTGSQDRTACVWRLP---DLVSVVTFR--GH---KRG 538 (882)
Q Consensus 471 ~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~~~~~s~-~~~~la~~s~dg~i~iwd~~---~~~~~~~~~--~h---~~~ 538 (882)
-.-. .. ........ -..+..+.... ++.+++.+..+. -+++.+. ..+.+..+. +- ...
T Consensus 341 ~Gi~---------~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~T 410 (504)
T PF10433_consen 341 NGIG---------IEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPT 410 (504)
T ss_dssp ESBE---------EE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE---TS-SSS-E
T ss_pred ccCC---------ceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCC
Confidence 3211 00 00000111 12233333222 245666665544 3444443 233322221 11 111
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc-CCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec
Q 002782 539 IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617 (882)
Q Consensus 539 v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 617 (882)
+.+-.+. +..++=... ..|++.+...++......... ..|...+ -++.+++.+-.+|.+.++.+..........
T Consensus 411 l~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~--~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~ 485 (504)
T PF10433_consen 411 LAAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAAS--INDPQVLVALSGGELVYFELDDNKISVSDN 485 (504)
T ss_dssp EEEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEE--ESSSEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred eEEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEE--ECCCEEEEEEeCCcEEEEEEECCceeeeee
Confidence 2222222 333333333 448888877777766554332 3343333 345677777788999999988776643332
Q ss_pred -----cCCCceEEEEEcC
Q 002782 618 -----KHEDKIWALAVGK 630 (882)
Q Consensus 618 -----~h~~~v~~l~~s~ 630 (882)
.....|.|+...|
T Consensus 486 ~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 486 DETILELDNEISCLSIEP 503 (504)
T ss_dssp ----EE-SS-EEEEE---
T ss_pred ccccccCCCceEEEEeCC
Confidence 1467888888765
No 409
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.00 E-value=0.0019 Score=71.31 Aligned_cols=187 Identities=18% Similarity=0.300 Sum_probs=106.6
Q ss_pred CeEEEEeCCCceE-EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeE
Q 002782 421 NSVRLWDSESRCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (882)
Q Consensus 421 g~i~iwd~~~~~~-~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (882)
+.+++-+..+... -...++..+.+..+.|....-..+. -.-|.+.+|+++............ ......+.++.-
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v---~~~~p~gs~~~~ 185 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEV---TPITPYGSDPQL 185 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEE---eecCcCCCCcce
Confidence 4455544433221 1224455667777777432211111 233667899987543222211111 112223334444
Q ss_pred EEEcC---CCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEE-----------EcCCCCEEEEeeCCCcEEEEec
Q 002782 500 LAVAP---NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE-----------FSPVDQVVITASGDKTIKIWSI 565 (882)
Q Consensus 500 ~~~s~---~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~-----------~s~~~~~l~s~~~d~~i~iwd~ 565 (882)
+.|.| +.-+++.+..++++++........ ..+.+|...++.++ .||||..+++++.||.++.|.+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 55544 677888898999998877655432 33455776665543 6899999999999999888875
Q ss_pred C-----CCceeeEeecCcC-CEEEEEEEeC-------C--CEEEEeec-CCeEEEEEcCCCeeE
Q 002782 566 S-----DGSCLKTFEGHTS-SVLRASFLTR-------G--AQIVSCGA-DGLVKLWTVRTGECI 613 (882)
Q Consensus 566 ~-----~~~~~~~~~~h~~-~v~~~~~s~~-------g--~~l~s~~~-dg~i~iwd~~~~~~~ 613 (882)
. .-.|+...+.|.+ +-.|.-|..+ + .++++++. +..+++|.-...+|+
T Consensus 265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3 3356777777773 3322223221 1 13455444 457999998877776
No 410
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.99 E-value=0.72 Score=52.24 Aligned_cols=227 Identities=15% Similarity=0.130 Sum_probs=110.7
Q ss_pred CCcEEEEEEcC------CcEEEEeCCCceeeeeeeCC-CcceEEeeeeeecCCCEEEEEeecC------CeEEEEeCCCc
Q 002782 365 EEQYLAVATNI------EQVQVYDLSSMSCSYVLAGH-SEIVLCLDTCALSSGKILIVTGSKD------NSVRLWDSESR 431 (882)
Q Consensus 365 ~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~ 431 (882)
.+.++++|+.. ..+..||..++.......-. ...-.++ ...++. +.++|+.| .++..||..+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~---~~~~~~-lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGV---AVLNGK-LYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccE---EEECCE-EEEEccccCCCcccceEEEecCCCC
Confidence 44566666555 35777888776443322211 1112222 233444 47888877 35777888776
Q ss_pred eEEeeeecccccEEEEEEccCCCcEEEEeeCCCe-----EEEEecCCCCCCCCCcccccchhhhhhcCCCee-EEEEcCC
Q 002782 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT-----IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN-SLAVAPN 505 (882)
Q Consensus 432 ~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~ 505 (882)
+-.....-..... ......-+..+.++|+.||. +..||..+.. +..... ...... .-...-+
T Consensus 360 ~W~~~a~M~~~R~-~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~--------W~~va~---m~~~r~~~gv~~~~ 427 (571)
T KOG4441|consen 360 QWTPVAPMNTKRS-DFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK--------WTPVAP---MLTRRSGHGVAVLG 427 (571)
T ss_pred ceeccCCccCccc-cceeEEECCEEEEEeccccccccccEEEecCCCCc--------ccccCC---CCcceeeeEEEEEC
Confidence 6443222111111 11111112337888888864 5566655431 111111 111111 2222347
Q ss_pred CcEEEEEcCCC------cEEEEeCCCceeE--EEEecccCceEEEEEcCCCCEEEEeeCCCc-----EEEEecCCCceee
Q 002782 506 DSLVCTGSQDR------TACVWRLPDLVSV--VTFRGHKRGIWSVEFSPVDQVVITASGDKT-----IKIWSISDGSCLK 572 (882)
Q Consensus 506 ~~~la~~s~dg------~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~-----i~iwd~~~~~~~~ 572 (882)
|.+.++|+.++ ++..||..+..-. ..+........ ++ .-++.+.+.|+.|+. |..||..+.+-..
T Consensus 428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 88888888665 4667777665322 22221111122 22 235778888887763 6778876554322
Q ss_pred E--eecCcCCEEEEEEEeCCCEEEEeecCC-----eEEEEEcCCCe
Q 002782 573 T--FEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGE 611 (882)
Q Consensus 573 ~--~~~h~~~v~~~~~s~~g~~l~s~~~dg-----~i~iwd~~~~~ 611 (882)
. .......+ .+ ..-++...+.|+.|| +|..||..+++
T Consensus 506 v~~m~~~rs~~-g~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 506 VAPMTSPRSAV-GV-VVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccCccccccc-cE-EEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 1 21111111 11 223556667777776 46666655544
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.98 E-value=0.025 Score=38.89 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.1
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 002782 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC 94 (882)
Q Consensus 60 ~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~ 94 (882)
...|++++|+|...+||.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5543
No 412
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.95 E-value=1.9 Score=42.50 Aligned_cols=182 Identities=12% Similarity=0.102 Sum_probs=111.8
Q ss_pred cEEEEEEccCCCcEEEEeeCCC--eEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEE
Q 002782 443 AVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (882)
Q Consensus 443 ~v~~v~~s~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~i 520 (882)
....+.|..++. ++-+.+.-| .|+.+|+.++..... ..+ ...---..++.. ++++....-.++...+
T Consensus 46 FTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~--------~~l-~~~~FgEGit~~-~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 46 FTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQS--------VPL-PPRYFGEGITIL-GDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEE--------EE--TTT--EEEEEEE-TTEEEEEESSSSEEEE
T ss_pred cCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEE--------EEC-CccccceeEEEE-CCEEEEEEecCCeEEE
Confidence 344566756654 666776666 577788776531100 000 001111233333 3455555667899999
Q ss_pred EeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc-----CCEEEEEEEeCCCEEEE
Q 002782 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVS 595 (882)
Q Consensus 521 wd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~s~~g~~l~s 595 (882)
||..+.+.+.++.- ...=|.++ .|++.|+.+.....++++|..+.+..+++.-.. ..++-+.+. +|...|-
T Consensus 115 yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 115 YDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp EETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred EccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence 99999999998873 45667777 467778888888899999999888877765332 234556665 6766666
Q ss_pred eecCCeEEEEEcCCCeeEEEecc------------C---CCceEEEEEcCCCCEEEEEe
Q 002782 596 CGADGLVKLWTVRTGECIATYDK------------H---EDKIWALAVGKKTEMFATGG 639 (882)
Q Consensus 596 ~~~dg~i~iwd~~~~~~~~~~~~------------h---~~~v~~l~~s~~~~~l~s~~ 639 (882)
.-....|...|..+|+++..++. + .+-.+.+|+.|....|...|
T Consensus 191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66677888899999999887641 1 24578899988766555444
No 413
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.88 E-value=2.5 Score=43.23 Aligned_cols=111 Identities=12% Similarity=0.130 Sum_probs=60.9
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEE-CCC
Q 002782 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD-LLA 177 (882)
Q Consensus 99 ~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd-~~~ 177 (882)
..-.+.+..+.-++||+++++++......-||.....-...-+.....|..|.|.|++. |......|.|++=+ ...
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~---lw~~~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN---LWMLARGGQIQFSDDPDD 217 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS----EEEEETTTEEEEEE-TTE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC---EEEEeCCcEEEEccCCCC
Confidence 34457889999999999999987656667888765433334445678999999999854 44455888888877 222
Q ss_pred CeEEEE--ec--CcccceEEEEEccCCCEEEEEeCCCeEE
Q 002782 178 KKCVAT--LD--KHFSRVTSMAITSDGSTLISAGRDKVVN 213 (882)
Q Consensus 178 ~~~~~~--l~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 213 (882)
...... .. ...-.+..++|.+++...++|+ .|.+.
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL 256 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE
Confidence 222221 11 1222478999998877666555 45443
No 414
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.82 E-value=0.56 Score=50.08 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=90.1
Q ss_pred ccccCC--ceEEccCCCEEEEEeCCeEEE-EEcCCCce--eeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 002782 18 QFYGGG--PLVVSSDGSFIACACGESINI-VDLSNASI--KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL 92 (882)
Q Consensus 18 ~~y~g~--~va~s~dg~~la~~~~~~I~i-~d~~~~~~--~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~ 92 (882)
.+|.|. .+..++||.+++++..+.+.. || .|.. ...-......++++.+.+++..++++ ..|.+ +|....+
T Consensus 235 ~~y~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G 310 (398)
T PLN00033 235 SYYTGTFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTG 310 (398)
T ss_pred ceeccceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCC
Confidence 356655 466789999999999886543 44 3322 22222335678999999999887666 44554 4444444
Q ss_pred e-----eEEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee---cCCCcEEEEEEecCCCccEEE
Q 002782 93 K-----CLRSWKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK---GHKGVVSSILFHPDTDKSLLF 162 (882)
Q Consensus 93 ~-----~~~~~~~--h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~---~h~~~V~~l~f~~~~~~~~l~ 162 (882)
. ....... ....+..+.|.+++..+++| ..|.+.... +.|+.-...+ .-......+.|.++++ .+
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~---g~ 385 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK---GF 385 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc---eE
Confidence 3 1222221 12358999999988876665 567666554 4444323322 2345688999877644 66
Q ss_pred EEeCCCcEEEE
Q 002782 163 SGSDDATVRVW 173 (882)
Q Consensus 163 sgs~dg~I~vw 173 (882)
..+.+|.|.-|
T Consensus 386 ~~G~~G~il~~ 396 (398)
T PLN00033 386 VLGNDGVLLRY 396 (398)
T ss_pred EEeCCcEEEEe
Confidence 66778877655
No 415
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.75 E-value=3.6 Score=44.15 Aligned_cols=301 Identities=14% Similarity=0.174 Sum_probs=154.7
Q ss_pred CCCcEEEEEeCCeEEEEEecccccccceeeeeeeecccCCceEEEEE---eCC-CCcEEEEEEcCCcEEEEeCCC--ce-
Q 002782 315 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF---LGE-EEQYLAVATNIEQVQVYDLSS--MS- 387 (882)
Q Consensus 315 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~-~~~~l~~~~~~~~i~i~d~~~--~~- 387 (882)
....+++++..|.+++|...........+.....+ ..+|..+.. .+. +...||+ -.-..+.+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l---~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL---KDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEec---CCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence 34577888999999999986544333333333333 355665554 333 3345555 4557888888731 11
Q ss_pred ------eeeeeeCCCcceEEeeeeee----cCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEE
Q 002782 388 ------CSYVLAGHSEIVLCLDTCAL----SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457 (882)
Q Consensus 388 ------~~~~~~~~~~~v~~~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l 457 (882)
.+..+..|.=.-.+..+|.- ..++.++.+-+.||.+.+++-+.-.....+.. .--...+++.+... .+
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tD-sf 189 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTD-SF 189 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCC-EE
Confidence 12223333322222222222 22346689999999999999776554444333 22233456776655 68
Q ss_pred EEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccC
Q 002782 458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR 537 (882)
Q Consensus 458 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~ 537 (882)
++++.+..+..|............ ....... =-..+.....--|.+.=|+.+..+.
T Consensus 190 vt~sss~~l~~Yky~~La~~s~~~-------~~~~~~~-------------~~~~~~k~l~~dWs~nlGE~~l~i~---- 245 (418)
T PF14727_consen 190 VTASSSWTLECYKYQDLASASEAS-------SRQSGTE-------------QDISSGKKLNPDWSFNLGEQALDIQ---- 245 (418)
T ss_pred EEecCceeEEEecHHHhhhccccc-------ccccccc-------------ccccccccccceeEEECCceeEEEE----
Confidence 888888899998865431100000 0000000 0000122223345544444443332
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEE-EEE----eCC---CEEEEeecCCeEEEEEcCC
Q 002782 538 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA-SFL----TRG---AQIVSCGADGLVKLWTVRT 609 (882)
Q Consensus 538 ~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~-~~s----~~g---~~l~s~~~dg~i~iwd~~~ 609 (882)
.+.++.....+++-+. .++.+.+- +|......+ ......++ .|. ..+ ..++.++.++.+.||. .
T Consensus 246 ---v~~~~~~~~~IvvLge-r~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d 317 (418)
T PF14727_consen 246 ---VVRFSSSESDIVVLGE-RSLFCLKD-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--D 317 (418)
T ss_pred ---EEEcCCCCceEEEEec-ceEEEEcC-CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--C
Confidence 2222222223333332 44555543 343322221 12222111 121 122 2488889999999995 4
Q ss_pred CeeEEEeccCCCceEEEEE---cCCCCEEEEEeCCCCEEEEECCCHHH
Q 002782 610 GECIATYDKHEDKIWALAV---GKKTEMFATGGSDALVNLWHDSTAAE 654 (882)
Q Consensus 610 ~~~~~~~~~h~~~v~~l~~---s~~~~~l~s~~~dg~i~iw~~~~~~~ 654 (882)
.+.+..-.....+| ++.. ..-...|++-+.+|.+.+-=+.|+..
T Consensus 318 ~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 318 TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 45555444333443 4433 23355889999999999988888764
No 416
>PRK13684 Ycf48-like protein; Provisional
Probab=95.70 E-value=2.1 Score=45.03 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=87.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEE-EECCCCe-eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 002782 60 SDTITALALSPDDKLLFSSGHSREIRV-WDLSTLK-CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT 137 (882)
Q Consensus 60 ~~~I~~l~~spd~~~las~~~dg~i~i-wd~~~~~-~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~ 137 (882)
...+.++++.|++.+++++.. |.+.. +|- .++ -.....+-...+.++.+.++++.+++| ..|.+++=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 346889999999877766654 54432 221 122 111222345688999999999877765 4576543234444432
Q ss_pred EEeec----CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEec---CcccceEEEEEccCCCEEEEEeCCC
Q 002782 138 HYFKG----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRDK 210 (882)
Q Consensus 138 ~~~~~----h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~---~h~~~v~~l~~s~~~~~l~s~~~dg 210 (882)
..... -...+..+.|.|++. ++.++.+|.|. .....++.-.... .-......+.|..+++. +..+..|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~---~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G 323 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE---IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRG 323 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC---EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCce-EEECCCc
Confidence 22211 123478888988643 55666777554 4555555444432 22235777877766655 5566688
Q ss_pred eEEEEec
Q 002782 211 VVNLWDL 217 (882)
Q Consensus 211 ~i~vwd~ 217 (882)
.|..|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 8877753
No 417
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=95.67 E-value=6.5 Score=46.56 Aligned_cols=186 Identities=14% Similarity=0.206 Sum_probs=94.0
Q ss_pred cCCeEEEEeCCCceEEeeeecc-cccEEEEEE---cc----CC-CcEEEEee---------CCCeEEEEecCCCCCCCCC
Q 002782 419 KDNSVRLWDSESRCCVGVGTGH-MGAVGAVAF---SK----KL-QNFLVSGS---------SDHTIKVWSFDGLSDDAEQ 480 (882)
Q Consensus 419 ~dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~---s~----~~-~~~l~s~~---------~dg~i~~wd~~~~~~~~~~ 480 (882)
..+.|.+.+..+++.+..+.-. ...+.++.. .. .+ +.++++|. .-|.+.++|+-..-+.+..
T Consensus 1002 ~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1002 EQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred ccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 3456666666666555443321 122333322 11 11 33677664 2488999997653222221
Q ss_pred ccc-ccchhh-hhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCC-CceeEEEEecccCceEEEEEcCCCCEEEEeeCC
Q 002782 481 PMN-LKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557 (882)
Q Consensus 481 ~~~-~~~~~~-~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 557 (882)
|.. .+.... .....++|..++ .-+|.++ ++ ..-.|.+|+++ ....+..-- -.-++.-....--.++|+.|.--
T Consensus 1082 P~t~~KlKel~~eE~KGtVsavc-eV~G~l~-~~-~GqKI~v~~l~r~~~ligVaF-iD~~~yv~s~~~vknlIl~gDV~ 1157 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVC-EVRGHLL-SS-QGQKIIVRKLDRDSELIGVAF-IDLPLYVHSMKVVKNLILAGDVM 1157 (1366)
T ss_pred CcccceeeeeehhhcccceEEEE-EeccEEE-Ec-cCcEEEEEEeccCCcceeeEE-eccceeEEehhhhhhheehhhhh
Confidence 111 111111 123345555554 3356444 33 23569999994 333332211 22233333333346677777766
Q ss_pred CcEEEEecCCCceeeEeec---CcCCEEEEEEEeCCC--EEEEeecCCeEEEEEcC
Q 002782 558 KTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGA--QIVSCGADGLVKLWTVR 608 (882)
Q Consensus 558 ~~i~iwd~~~~~~~~~~~~---h~~~v~~~~~s~~g~--~l~s~~~dg~i~iwd~~ 608 (882)
..|.+...+..-...++-+ ..-.+.++.|.-||. +++++..|+.|+++-..
T Consensus 1158 ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1158 KSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 6777666544322222221 223577788888876 46888889999888654
No 418
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.38 E-value=0.055 Score=37.24 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=28.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 002782 102 DGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (882)
Q Consensus 102 ~~~V~~l~fs~~~~~lasg~~dg~v~vwd~ 131 (882)
...|.+++|+|...+||.|+.+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 467999999999999999999999999998
No 419
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.34 E-value=7.7 Score=45.27 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=67.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEe---ecCCCCEEEEEEcCCC------CEEEEEeCCCcEEEEECCCCeEEEEee--
Q 002782 73 KLLFSSGHSREIRVWDLSTLKCLRSW---KGHDGPAIGMACHPSG------GLLATAGADRKVLVWDVDGGFCTHYFK-- 141 (882)
Q Consensus 73 ~~las~~~dg~i~iwd~~~~~~~~~~---~~h~~~V~~l~fs~~~------~~lasg~~dg~v~vwd~~~~~~~~~~~-- 141 (882)
..++.+-.+|.+..+.......+..+ ..-+..|.|+++.++. ++++.++.|+++++..+.-..++..+.
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ 629 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence 34555556666666655333223333 2235788999998866 579999999999999998766666554
Q ss_pred cCCCcEEEEEEecC---CC----ccEEEEEeCCCcEEEE--ECCCC
Q 002782 142 GHKGVVSSILFHPD---TD----KSLLFSGSDDATVRVW--DLLAK 178 (882)
Q Consensus 142 ~h~~~V~~l~f~~~---~~----~~~l~sgs~dg~I~vw--d~~~~ 178 (882)
+-..++.++++.+. +. ..+|.+|-.+|.+.-. |.-+|
T Consensus 630 ~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G 675 (1205)
T KOG1898|consen 630 GLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTG 675 (1205)
T ss_pred ccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEeccccc
Confidence 44556666666432 21 4567778777766544 33444
No 420
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.08 E-value=3.8 Score=43.26 Aligned_cols=199 Identities=11% Similarity=0.096 Sum_probs=93.8
Q ss_pred EEEE-eeCCCeEEEEecCCCCCCCCCcccccchhhhh-hcCCCeeEEEEcCCCcEEEEEcC------CCcEEEEeCCCce
Q 002782 456 FLVS-GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQ------DRTACVWRLPDLV 527 (882)
Q Consensus 456 ~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~s~------dg~i~iwd~~~~~ 527 (882)
+|+. |-..+.|.+.|+.+....+.-........... ..-.....+-.-|+|++++++-. -|.+.++|-++.+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 4444 44788999999875432111111111111111 01112223444578888877432 2458888888888
Q ss_pred eEEEEecccC---ceEEEEEcCCCCEEEEeeC--------------------CCcEEEEecCCCceeeEeecCc--CCEE
Q 002782 528 SVVTFRGHKR---GIWSVEFSPVDQVVITASG--------------------DKTIKIWSISDGSCLKTFEGHT--SSVL 582 (882)
Q Consensus 528 ~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~--------------------d~~i~iwd~~~~~~~~~~~~h~--~~v~ 582 (882)
.......... --..+-|.|..+.++|... ..++.+||+.+.+.++++.--. ..+.
T Consensus 169 v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pL 248 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPL 248 (461)
T ss_dssp EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEE
T ss_pred ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceE
Confidence 8777765332 2356677887788887643 3579999999999999987432 2456
Q ss_pred EEEEEeC--CCEEEEee-cCCeEEEE-EcCCCe----eEEEeccC-----------------CCceEEEEEcCCCCEEEE
Q 002782 583 RASFLTR--GAQIVSCG-ADGLVKLW-TVRTGE----CIATYDKH-----------------EDKIWALAVGKKTEMFAT 637 (882)
Q Consensus 583 ~~~~s~~--g~~l~s~~-~dg~i~iw-d~~~~~----~~~~~~~h-----------------~~~v~~l~~s~~~~~l~s 637 (882)
.+.|..+ ..+=++++ -.++|..| .-..++ .+.++... ..-|+.+.+|.|+++|..
T Consensus 249 EvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv 328 (461)
T PF05694_consen 249 EVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV 328 (461)
T ss_dssp EEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred EEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence 6778644 44433333 34445444 334443 22233211 234788999999998876
Q ss_pred Ee-CCCCEEEEECCCHHH
Q 002782 638 GG-SDALVNLWHDSTAAE 654 (882)
Q Consensus 638 ~~-~dg~i~iw~~~~~~~ 654 (882)
++ .+|.|+.||++....
T Consensus 329 s~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 329 SNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp EETTTTEEEEEE-SSTTS
T ss_pred EcccCCcEEEEecCCCCC
Confidence 55 589999999997643
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.07 E-value=0.81 Score=49.02 Aligned_cols=143 Identities=12% Similarity=0.082 Sum_probs=82.4
Q ss_pred CeeEEEEcCCCcEEEEEc-----------CCC-cEEEEeCCC--ce--eEEEEecccCceEEEEEcCCCCEEEEeeCCCc
Q 002782 496 DINSLAVAPNDSLVCTGS-----------QDR-TACVWRLPD--LV--SVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559 (882)
Q Consensus 496 ~i~~~~~s~~~~~la~~s-----------~dg-~i~iwd~~~--~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~ 559 (882)
....++|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........+++.+++ +++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 457899999999887753 223 677776432 22 223444334456889999988 444 444433
Q ss_pred EEEEecCCC-----c--ee-eEeec----CcCCEEEEEEEeCCCEEEEeecC-------------------CeEEEEEcC
Q 002782 560 IKIWSISDG-----S--CL-KTFEG----HTSSVLRASFLTRGAQIVSCGAD-------------------GLVKLWTVR 608 (882)
Q Consensus 560 i~iwd~~~~-----~--~~-~~~~~----h~~~v~~~~~s~~g~~l~s~~~d-------------------g~i~iwd~~ 608 (882)
.++.|.... + .+ ..+.. +......+.|.|||.+.++.+.. |.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 334354321 1 11 22322 23447789999999876665521 445555655
Q ss_pred CCeeEEEeccCCCceEEEEEcCCCCEEEEEeCC
Q 002782 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSD 641 (882)
Q Consensus 609 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 641 (882)
.++....-.+ ....+.++|+++|+++++-..+
T Consensus 173 g~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence 5443222223 2345789999999988765544
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=0.23 Score=57.29 Aligned_cols=142 Identities=11% Similarity=0.067 Sum_probs=93.4
Q ss_pred CCeeEEEEcCCCcEEEEEc--CCCcEEEEeCCCceeEE-----EEecc------cCceEEEEEcCCCC-EEEEeeCCCcE
Q 002782 495 KDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVV-----TFRGH------KRGIWSVEFSPVDQ-VVITASGDKTI 560 (882)
Q Consensus 495 ~~i~~~~~s~~~~~la~~s--~dg~i~iwd~~~~~~~~-----~~~~h------~~~v~~l~~s~~~~-~l~s~~~d~~i 560 (882)
.+|..+...+|+...++.. .+-.|..||+.+..... -+..| ..-..++.|.|.-. ..+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3566777778876655433 33478899987643221 12222 22356778887533 45666788999
Q ss_pred EEEecCCCce-eeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccC----CCceEEEEEcCCCCEE
Q 002782 561 KIWSISDGSC-LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH----EDKIWALAVGKKTEMF 635 (882)
Q Consensus 561 ~iwd~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~s~~~~~l 635 (882)
++..+..... ..++ ......++++|+|.|++++.|-..|++.-|.. +++....+.+. ...|.++.|-....++
T Consensus 181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEE
Confidence 8887754322 2222 25567899999999999999999999998874 45544444322 4679999998777776
Q ss_pred EEE
Q 002782 636 ATG 638 (882)
Q Consensus 636 ~s~ 638 (882)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 653
No 423
>PHA03098 kelch-like protein; Provisional
Probab=95.00 E-value=1 Score=51.27 Aligned_cols=172 Identities=9% Similarity=0.077 Sum_probs=83.3
Q ss_pred eEEEEEcCCCceee--eecCCCccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeeEEE--eecCCCCEEEEEEc
Q 002782 41 SINIVDLSNASIKS--TIEGGSDTITALALSPDDKLLFSSGHS-----REIRVWDLSTLKCLRS--WKGHDGPAIGMACH 111 (882)
Q Consensus 41 ~I~i~d~~~~~~~~--~l~~~~~~I~~l~~spd~~~las~~~d-----g~i~iwd~~~~~~~~~--~~~h~~~V~~l~fs 111 (882)
.+..||+.+++-.. .+........+++ -+++..+.||.+ ..+..||..+.+-... +....... ++ ..
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~-~~ 387 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CV-VN 387 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eE-EE
Confidence 47788988776432 1221122222232 357777778764 3577888776543221 11111111 11 22
Q ss_pred CCCCEEEEEeCC------CcEEEEECCCCeEEEEeecCCCc-EEEEEEecCCCccEEEEEeCC--------CcEEEEECC
Q 002782 112 PSGGLLATAGAD------RKVLVWDVDGGFCTHYFKGHKGV-VSSILFHPDTDKSLLFSGSDD--------ATVRVWDLL 176 (882)
Q Consensus 112 ~~~~~lasg~~d------g~v~vwd~~~~~~~~~~~~h~~~-V~~l~f~~~~~~~~l~sgs~d--------g~I~vwd~~ 176 (882)
-+++..+.||.+ ..+..||+.+++-...-...... -.+++. .+ + .+++.|+.+ ..+.+||..
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~-~-~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HD-G-KIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-EC-C-EEEEECCccCCCCCcccceEEEecCC
Confidence 356667777632 45888998876543221100000 112222 22 2 345555432 238888987
Q ss_pred CCeEEEE--ecCcccceEEEEEccCCCEEEEEeCC-----CeEEEEecCCce
Q 002782 177 AKKCVAT--LDKHFSRVTSMAITSDGSTLISAGRD-----KVVNLWDLRDYS 221 (882)
Q Consensus 177 ~~~~~~~--l~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~vwd~~~~~ 221 (882)
+++-... +.........+. -+++.++.||.+ +.+.+||..+.+
T Consensus 465 ~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 465 TNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 7653322 211111112222 266677777654 467778776654
No 424
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.99 E-value=2.1 Score=40.54 Aligned_cols=110 Identities=17% Similarity=0.315 Sum_probs=67.1
Q ss_pred ceEEccCCCEEEEEeCCeEEEEEcC--CCceeeeecCCCccEEEEEEcCCCCEEEEEeC---CC---cEEEE-ECCC---
Q 002782 24 PLVVSSDGSFIACACGESINIVDLS--NASIKSTIEGGSDTITALALSPDDKLLFSSGH---SR---EIRVW-DLST--- 91 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~~I~i~d~~--~~~~~~~l~~~~~~I~~l~~spd~~~las~~~---dg---~i~iw-d~~~--- 91 (882)
.+.-++.+.+++++.+..|.+|++. ..+.+.++..- +.|..++++..|+||++--. .. .+|+| ||..
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 3444443334344666689999988 33456666643 78999999999999999633 12 56775 4432
Q ss_pred -CeeEE-EeecC---------------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 002782 92 -LKCLR-SWKGH---------------------DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF 135 (882)
Q Consensus 92 -~~~~~-~~~~h---------------------~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~ 135 (882)
..+++ ++-|| +.++.+++..|-..-|+.|+ ++.+.+|.+..+.
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 12222 22221 33667888888544555554 4778899875443
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.93 E-value=1.1 Score=50.86 Aligned_cols=154 Identities=13% Similarity=0.158 Sum_probs=100.5
Q ss_pred ccCCceEEccCCCEEEEEeCCeEEEEEcCCCceee------eecC----------------CCccEEEEEEcC--CCCEE
Q 002782 20 YGGGPLVVSSDGSFIACACGESINIVDLSNASIKS------TIEG----------------GSDTITALALSP--DDKLL 75 (882)
Q Consensus 20 y~g~~va~s~dg~~la~~~~~~I~i~d~~~~~~~~------~l~~----------------~~~~I~~l~~sp--d~~~l 75 (882)
|-..-.|++. +.+|+++.++.|.||++....... .+.. -...|..|.+.. +...|
T Consensus 39 fKNNLtalsq-~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVL 117 (717)
T PF08728_consen 39 FKNNLTALSQ-RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVL 117 (717)
T ss_pred cccceeEEec-CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEE
Confidence 3334445555 899999999999999986443211 1100 112455665554 34678
Q ss_pred EEEeCCCcEEEEECCC-------C----e---------eEEEeecCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEECCC
Q 002782 76 FSSGHSREIRVWDLST-------L----K---------CLRSWKGHDGPAIGMACH--PSGGLLATAGADRKVLVWDVDG 133 (882)
Q Consensus 76 as~~~dg~i~iwd~~~-------~----~---------~~~~~~~h~~~V~~l~fs--~~~~~lasg~~dg~v~vwd~~~ 133 (882)
+.+.+||.|.+|.+++ . . +...++ -...++.++++ ...+++|+++....|.||-...
T Consensus 118 l~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 118 LLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred EEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 8999999999997631 0 0 111222 23578899998 7888888888888888876543
Q ss_pred C--eEEE-EeecCCCcEEEEEEecCCC---c-cEEEEEeCCCcEEEEEC
Q 002782 134 G--FCTH-YFKGHKGVVSSILFHPDTD---K-SLLFSGSDDATVRVWDL 175 (882)
Q Consensus 134 ~--~~~~-~~~~h~~~V~~l~f~~~~~---~-~~l~sgs~dg~I~vwd~ 175 (882)
. +..+ .-..|...|.+++|.++.. + ..+++++-.|.+.+|++
T Consensus 197 ~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 197 VDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2 1111 1113677899999987652 1 36888999999999887
No 426
>PHA03098 kelch-like protein; Provisional
Probab=94.65 E-value=1.4 Score=50.16 Aligned_cols=105 Identities=8% Similarity=0.036 Sum_probs=52.8
Q ss_pred CCCcEEEEEcCC------CcEEEEeCCCceeEEE--EecccCceEEEEEcCCCCEEEEeeCCC--------cEEEEecCC
Q 002782 504 PNDSLVCTGSQD------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGDK--------TIKIWSISD 567 (882)
Q Consensus 504 ~~~~~la~~s~d------g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~d~--------~i~iwd~~~ 567 (882)
-++++.+.|+.+ ..+..||..+.+-... +....... ++ ...++.+++.|+.+. .+.+||..+
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 367777777732 3578888876532211 11111111 12 223566667776432 378888876
Q ss_pred Ccee--eEeecCcCCEEEEEEEeCCCEEEEeecC-----CeEEEEEcCCCee
Q 002782 568 GSCL--KTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGEC 612 (882)
Q Consensus 568 ~~~~--~~~~~h~~~v~~~~~s~~g~~l~s~~~d-----g~i~iwd~~~~~~ 612 (882)
++-. ..+....... .+ ...++..++.||.+ +.+.+||..+.+.
T Consensus 466 ~~W~~~~~~~~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 466 NKWTELSSLNFPRINA-SL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CceeeCCCCCcccccc-eE-EEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 5432 2121111111 11 22366666777654 3677787776543
No 427
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.58 E-value=7.1 Score=41.04 Aligned_cols=239 Identities=13% Similarity=0.135 Sum_probs=115.1
Q ss_pred eEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE---Eeee----ecccccEEEEEEccC---CCcEEEEeeCC-----
Q 002782 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC---VGVG----TGHMGAVGAVAFSKK---LQNFLVSGSSD----- 463 (882)
Q Consensus 399 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~v~~s~~---~~~~l~s~~~d----- 463 (882)
...++ +.|+++. +++...|.|++++ ..+.. +... .........++++|+ ...+.++.+..
T Consensus 4 P~~~a--~~pdG~l--~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 4 PRSMA--FLPDGRL--LVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp EEEEE--EETTSCE--EEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred ceEEE--EeCCCcE--EEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 34555 7888764 4456699999999 33332 2222 234567889999994 22233333321
Q ss_pred ---CeEEEEecCCCCCCCCCcccc-cchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCc-------------EEEEeCCCc
Q 002782 464 ---HTIKVWSFDGLSDDAEQPMNL-KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-------------ACVWRLPDL 526 (882)
Q Consensus 464 ---g~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~-------------i~iwd~~~~ 526 (882)
..|.-|.+............+ ...............++|.|||.+.++.+..+. |.-.+.. +
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G 157 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-G 157 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-S
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-C
Confidence 234444443321000000000 000000112234567999999977666544332 2222211 1
Q ss_pred e-------------eEEE-EecccCceEEEEEcCC-CCEEEEe-eCCCcEEEEecCCC----------------------
Q 002782 527 V-------------SVVT-FRGHKRGIWSVEFSPV-DQVVITA-SGDKTIKIWSISDG---------------------- 568 (882)
Q Consensus 527 ~-------------~~~~-~~~h~~~v~~l~~s~~-~~~l~s~-~~d~~i~iwd~~~~---------------------- 568 (882)
+ .... -.|+ .....++|.|. |.+.++= +.|..=.|--+..|
T Consensus 158 ~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 158 SIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp SB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred cCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 1 0000 1112 23567899998 5555432 22222222222211
Q ss_pred -------ceeeEeecCcCCEEEEEEEe-------CCCEEEEeecCCeEEEEEcCCCeeEE---E-eccCCCceEEEEEcC
Q 002782 569 -------SCLKTFEGHTSSVLRASFLT-------RGAQIVSCGADGLVKLWTVRTGECIA---T-YDKHEDKIWALAVGK 630 (882)
Q Consensus 569 -------~~~~~~~~h~~~v~~~~~s~-------~g~~l~s~~~dg~i~iwd~~~~~~~~---~-~~~h~~~v~~l~~s~ 630 (882)
.++..+. +...++.+.|-. .|.+++..-..+.|....++++..+. . +.....++..+++.|
T Consensus 237 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 237 PSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp SS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred cCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 0122233 335677788764 34466666556788888877553322 1 223445899999999
Q ss_pred CCCEEEEEeCCCCEE
Q 002782 631 KTEMFATGGSDALVN 645 (882)
Q Consensus 631 ~~~~l~s~~~dg~i~ 645 (882)
||.+.++...+|.|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999999888888763
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=2.2 Score=47.55 Aligned_cols=181 Identities=10% Similarity=0.066 Sum_probs=95.1
Q ss_pred eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe----ecCCCCEEEEEEcCCCCE
Q 002782 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW----KGHDGPAIGMACHPSGGL 116 (882)
Q Consensus 41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~----~~h~~~V~~l~fs~~~~~ 116 (882)
.|.|++. +|..+..+--....+-.+.|+.+.. |++...+|++++|++-. +.+... ......|..+.|..+|-.
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCceE
Confidence 5899997 5666655543344888999998876 56667899999999843 222221 223345666666666633
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeec---CCCcEEEEEEecCCC-ccEEEEEe-CCCcEEEEECCCC-eEEEEecCcccc
Q 002782 117 LATAGADRKVLVWDVDGGFCTHYFKG---HKGVVSSILFHPDTD-KSLLFSGS-DDATVRVWDLLAK-KCVATLDKHFSR 190 (882)
Q Consensus 117 lasg~~dg~v~vwd~~~~~~~~~~~~---h~~~V~~l~f~~~~~-~~~l~sgs-~dg~I~vwd~~~~-~~~~~l~~h~~~ 190 (882)
+.+ .+|.+.+-+-.+......+.. ...+-+|-...+++. ...++-.. ..| ..+.-..+. .....+....+.
T Consensus 142 vlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 142 VLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred EEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 333 345544433222111222221 111112222222211 11111111 011 111111111 111222222356
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeec
Q 002782 191 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (882)
Q Consensus 191 v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 227 (882)
+..+.+||+.++|+--...|.|.+-+.+..+....+.
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 8889999999999999999999998887766655544
No 429
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.25 E-value=1.4 Score=47.79 Aligned_cols=158 Identities=12% Similarity=0.151 Sum_probs=87.7
Q ss_pred cceEEeeeeeecCCCEEEEEee--cCCeEEEEeCCCceEEeeeecccccEEEEEEccCCC---cEEEEeeCCCeEEEEec
Q 002782 397 EIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSF 471 (882)
Q Consensus 397 ~~v~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~---~~l~s~~~dg~i~~wd~ 471 (882)
.++..+ .+.||+.++.+.- .+|.+++=| ...+ +.-..|..++|.|-+. .-+++....+.|.+|.+
T Consensus 20 HPvhGl---aWTDGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 20 HPVHGL---AWTDGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred ccccce---EecCCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 456666 4467776455542 233332211 1222 3445788999988531 13556667789999998
Q ss_pred CCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCc--eeEEEEecccCceEEEEEcCCCC
Q 002782 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWSVEFSPVDQ 549 (882)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~ 549 (882)
.....+.................--...+.|+|....|++-+....-.++++... .....++ ..+-|.|.+|.+||+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQ 168 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCC
Confidence 7443222111111111111111111245789999988887766554445555432 2223333 567799999999999
Q ss_pred EEEEeeCC-CcEEEEec
Q 002782 550 VVITASGD-KTIKIWSI 565 (882)
Q Consensus 550 ~l~s~~~d-~~i~iwd~ 565 (882)
.|+++-+. =.-++||-
T Consensus 169 RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEEEeCCeEEEEEecC
Confidence 88776443 34678874
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.20 E-value=1.7 Score=48.85 Aligned_cols=115 Identities=10% Similarity=0.151 Sum_probs=76.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECC---
Q 002782 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL--- 176 (882)
Q Consensus 101 h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~--- 176 (882)
.-...+.+.-|.-++..++-+....+.|||...+..-..-. ...+.|..+.|...++...+++.+-.+.|.++.-.
T Consensus 28 ~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 28 GISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 33455566666656554444455789999999887544333 35788999999766666668888889999998431
Q ss_pred --C----CeEEEEe--cCcc-cceEEEEEccCCCEEEEEeCCCeEEEEec
Q 002782 177 --A----KKCVATL--DKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (882)
Q Consensus 177 --~----~~~~~~l--~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~vwd~ 217 (882)
. ...+..+ ..|+ .+|.+..|.++|..++.+| +.+.+++-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1 1233322 3344 5799999999996665554 56888764
No 431
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.85 E-value=1.7 Score=48.73 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=79.5
Q ss_pred EEecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEee-cCcCCEEEEEEE--eCCCEEEEeecCCeEEEEEc
Q 002782 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFL--TRGAQIVSCGADGLVKLWTV 607 (882)
Q Consensus 531 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s--~~g~~l~s~~~dg~i~iwd~ 607 (882)
++...-..++-+.-|.-++..++-+...++.|||...+.....-. ...+.|..+.|. |+|+.+++.|-.+.|.++.-
T Consensus 24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 344344455556666656666665666789999998886433221 356889999885 78999999999999999853
Q ss_pred C---------CCeeEEEe--ccCC-CceEEEEEcCCCCEEEEEeCCCCEEEEECC
Q 002782 608 R---------TGECIATY--DKHE-DKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (882)
Q Consensus 608 ~---------~~~~~~~~--~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iw~~~ 650 (882)
. +..++..+ ..|. .+|.+..|.++|.+++.+| +.+.|++-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 2 12233333 2343 6789999999998776655 447777643
No 432
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.73 E-value=3.2 Score=45.15 Aligned_cols=115 Identities=20% Similarity=0.323 Sum_probs=72.5
Q ss_pred ccEEEEEEcCCC----CEEEEEeCCCcEEEEECC-----CCeeEEEeecC---CCCE--EEEEEcCCCCEEEEEeCCCcE
Q 002782 61 DTITALALSPDD----KLLFSSGHSREIRVWDLS-----TLKCLRSWKGH---DGPA--IGMACHPSGGLLATAGADRKV 126 (882)
Q Consensus 61 ~~I~~l~~spd~----~~las~~~dg~i~iwd~~-----~~~~~~~~~~h---~~~V--~~l~fs~~~~~lasg~~dg~v 126 (882)
+-|..+.|+|-+ ..|.+......|.||.+. ..+.+.+-..+ .-+| ..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 468999999953 234444556799999885 23333322211 1122 346799999988876655544
Q ss_pred EEEECC--CCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCC
Q 002782 127 LVWDVD--GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177 (882)
Q Consensus 127 ~vwd~~--~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~ 177 (882)
.+.++. +.+....+ ...+.|.|.+|.+||.+.+++.|+ .=.-++||-..
T Consensus 137 V~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCch
Confidence 556653 33333344 357889999999999886666655 33467888543
No 433
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.72 E-value=14 Score=43.12 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=56.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 002782 60 SDTITALALSPDDKLLFSSGHSREIRVWDLST-LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH 138 (882)
Q Consensus 60 ~~~I~~l~~spd~~~las~~~dg~i~iwd~~~-~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~ 138 (882)
...|..+.++|+|++||..|..| |.|-.+.. ...-..+.+....|.|-.+.=+..++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~--------------------- 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF--------------------- 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc---------------------
Confidence 45789999999999999988865 44444422 11112222222333333222221111
Q ss_pred EeecCCCcEEEEEEecCC-CccEEEEEeCCCcEEEEECCCC
Q 002782 139 YFKGHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLAK 178 (882)
Q Consensus 139 ~~~~h~~~V~~l~f~~~~-~~~~l~sgs~dg~I~vwd~~~~ 178 (882)
...+...|..+.|+|.+ ....|+.-+.|+++|+||+...
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 11245568888899875 2345778888999999998643
No 434
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=8 Score=38.27 Aligned_cols=273 Identities=12% Similarity=0.063 Sum_probs=147.2
Q ss_pred ceEEEEEeCCCCcEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCC---c
Q 002782 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---R 431 (882)
Q Consensus 355 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~ 431 (882)
-+.++.+ .+++...+..+.-++++|+.+......+..-.- ...+.++.-.|++ ...+..|.-+.+.|+.+ .
T Consensus 88 l~~Dv~v---se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--~gyaygv~vsGn~-aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 88 LFADVRV---SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT--DGYAYGVYVSGNY-AYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhheeEe---cccEEEEEcCCCceEEEeccCCCCcceeccccC--CceEEEEEecCCE-EEEeeccCcEEEEECCCCCCc
Confidence 3445555 456888888889999999987655433321110 0222224466777 55555454555667654 3
Q ss_pred eEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhhhhhcCCCeeEEEEcCCCcEEEE
Q 002782 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (882)
Q Consensus 432 ~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 511 (882)
..........+.-..++.|-+ +...+..|+-+.+-|+...... ........+..+.++..+++..+++.
T Consensus 162 ~lagrya~~~~d~~~v~ISGn---~AYvA~~d~GL~ivDVSnp~sP--------vli~~~n~g~g~~sv~vsdnr~y~vv 230 (370)
T COG5276 162 QLAGRYALPGGDTHDVAISGN---YAYVAWRDGGLTIVDVSNPHSP--------VLIGSYNTGPGTYSVSVSDNRAYLVV 230 (370)
T ss_pred eeeeeeccCCCCceeEEEecC---eEEEEEeCCCeEEEEccCCCCC--------eEEEEEecCCceEEEEecCCeeEEEE
Confidence 444455555555567777754 5677778999999998764211 00001112236677888877766666
Q ss_pred EcCCCcEEEEeCCCceeEEEEec--ccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCce---eeEeecCcCCEEEEEE
Q 002782 512 GSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC---LKTFEGHTSSVLRASF 586 (882)
Q Consensus 512 ~s~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~ 586 (882)
.. --+.+-|..+.+....+.. ...++.--.|.-.+++...+..+.-+.+-|+.+..- ...+......-..+.
T Consensus 231 y~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~- 307 (370)
T COG5276 231 YD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIR- 307 (370)
T ss_pred cc--cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceE-
Confidence 53 4467777766543333221 222221112233377777777777777777754321 111110110111121
Q ss_pred EeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCCCEEEEEC
Q 002782 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (882)
Q Consensus 587 s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw~~ 649 (882)
.-|.++..+..+ ...+-+....+......+....+.+.+.+-+.+.+.+...++-+.+|+.
T Consensus 308 -ay~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 308 -AYGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred -EecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 123344443333 2333343333333333333444555566667778888999999999975
No 435
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.66 E-value=12 Score=40.20 Aligned_cols=144 Identities=11% Similarity=0.063 Sum_probs=85.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----
Q 002782 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKC--LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF----- 135 (882)
Q Consensus 63 I~~l~~spd~~~las~~~dg~i~iwd~~~~~~--~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~----- 135 (882)
...+..++||.+++++..-..++-||- |.. ...-......++++.|.+++..++++ .+|.+ +|....+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 345667889888877765444444553 221 11122235678999999999887765 44554 44444443
Q ss_pred EEEEeec--CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEec---CcccceEEEEEccCCCEEEEEeCCC
Q 002782 136 CTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRDK 210 (882)
Q Consensus 136 ~~~~~~~--h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~---~h~~~v~~l~~s~~~~~l~s~~~dg 210 (882)
....... -...+..+.|.+++. ++.++..|.+.... ..|+.-.... .-......+.|.++++ .+..+.+|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~---~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G 391 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKE---AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDG 391 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCc---EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCc
Confidence 2222221 123588899987754 67777888766654 4444433322 2235688999877655 44555678
Q ss_pred eEEEE
Q 002782 211 VVNLW 215 (882)
Q Consensus 211 ~i~vw 215 (882)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 76654
No 436
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.64 E-value=13 Score=40.50 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=49.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-CcEEEEEEecCCCccEEEEEeCCCcEEEEECCC
Q 002782 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHK-GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177 (882)
Q Consensus 101 h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~-~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~ 177 (882)
...+|.++.++..|. +-.|+.|| +..+|..+++.++.-.... ..|..+.-.-.+. +..|+.+| |.+.+...
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 457899999999885 55667777 7788888888766544433 4555555544433 88888888 77777655
No 437
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=93.60 E-value=10 Score=39.23 Aligned_cols=239 Identities=10% Similarity=0.067 Sum_probs=115.5
Q ss_pred cEEEEEEcCCcEEEEeCCCceeeeeeeCCCcceEEeeeeeecCCCEEEEEeecCCeEEEEeCCCceE-------------
Q 002782 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC------------- 433 (882)
Q Consensus 367 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------- 433 (882)
.+++.|+++|...+. .........--.+...|.++. ..+..+.+++.++....++.+++..-..
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~~~~~v~q~~--v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKLIGRRSVTQIW--VLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEecCcCceEEEE--EEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 589999997766555 443211112223456888888 6777777677777777799998732211
Q ss_pred --EeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccch-hhhhhcCCCeeEEEEcCC--CcE
Q 002782 434 --VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK-AVVAAHGKDINSLAVAPN--DSL 508 (882)
Q Consensus 434 --~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~--~~~ 508 (882)
....-+|.......++.......++++....+|.++.......... ..+.. ........++..+..+++ ...
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~---~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFK---LFKSKFLFPLISPVPVFVELVSSSFERPG 167 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhh---hhcccccccCCCCccceEeeecccccceE
Confidence 0111233333333333332222344555566777765432210000 00000 000011123333433433 567
Q ss_pred EEEEcCCCcEEEEeCCC--ceeEE-----EEeccc-CceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceee--EeecCc
Q 002782 509 VCTGSQDRTACVWRLPD--LVSVV-----TFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK--TFEGHT 578 (882)
Q Consensus 509 la~~s~dg~i~iwd~~~--~~~~~-----~~~~h~-~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~ 578 (882)
+++|+..+...++++.. ..... ...... .++....+ +++.+|++- . ....+-|.......+ .+. -.
T Consensus 168 lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc~-~-~~~v~Vn~~G~~~~r~~~l~-w~ 243 (302)
T smart00036 168 ICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLCY-D-EFGVFVNLYGKRRSRNPILH-WE 243 (302)
T ss_pred EEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEEE-C-cEEEEEeCCCCccccceEEE-cC
Confidence 77777643344444432 11000 011111 33333333 345555443 2 334444543212211 121 23
Q ss_pred CCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEecc
Q 002782 579 SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK 618 (882)
Q Consensus 579 ~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 618 (882)
..+.++++. ..+|+.-+.+ .|.|+++.+++.++++..
T Consensus 244 ~~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 244 FMPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred CcccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 345556665 4677777654 499999999999988863
No 438
>PHA02790 Kelch-like protein; Provisional
Probab=93.52 E-value=5 Score=44.82 Aligned_cols=182 Identities=8% Similarity=0.019 Sum_probs=82.2
Q ss_pred EEEEEeecCC-----eEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCC--CeEEEEecCCCCCCCCCcccc
Q 002782 412 ILIVTGSKDN-----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNL 484 (882)
Q Consensus 412 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~ 484 (882)
.++++|+.++ .+..||..++.......-...........-++. +.+.|+.+ .++..||..... +
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~-iYviGG~~~~~sve~ydp~~n~--------W 343 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNK-LYVVGGLPNPTSVERWFHGDAA--------W 343 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCE-EEEECCcCCCCceEEEECCCCe--------E
Confidence 4466666442 466788877654433221111111111122333 66777654 356777754321 1
Q ss_pred cchhhhhhcCCCeeEEEEcCCCcEEEEEcCCC---cEEEEeCCCceeEEE--EecccCceEEEEEcCCCCEEEEeeCCCc
Q 002782 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR---TACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGDKT 559 (882)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg---~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~d~~ 559 (882)
........... ......-+|++.+.|+.++ .+..||..+..-... +....... ++ ..-++++.+.|+ .
T Consensus 344 ~~~~~l~~~r~--~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~ 416 (480)
T PHA02790 344 VNMPSLLKPRC--NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---N 416 (480)
T ss_pred EECCCCCCCCc--ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---c
Confidence 11111111111 1122234788888887654 467788765432211 11111111 12 123466666663 4
Q ss_pred EEEEecCCCce--eeEeecCcCCEEEEEEEeCCCEEEEeecCC-----eEEEEEcCCCe
Q 002782 560 IKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGE 611 (882)
Q Consensus 560 i~iwd~~~~~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-----~i~iwd~~~~~ 611 (882)
+.+||..+++- +..+....... ++ ..-+|+..+.||.++ .+..||..+++
T Consensus 417 ~e~ydp~~~~W~~~~~m~~~r~~~-~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIYPRDNP-EL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred eEEecCCCCcEeEcCCCCCCcccc-EE-EEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 67888766532 22222111111 12 234667777777542 45556655443
No 439
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.49 E-value=3.2 Score=47.15 Aligned_cols=111 Identities=13% Similarity=0.267 Sum_probs=76.4
Q ss_pred CeeEEEEcC--CCcEEEEEcCCCcEEEEeCCCc--------------------eeEEEEecccCceEEEEEc--CCCCEE
Q 002782 496 DINSLAVAP--NDSLVCTGSQDRTACVWRLPDL--------------------VSVVTFRGHKRGIWSVEFS--PVDQVV 551 (882)
Q Consensus 496 ~i~~~~~s~--~~~~la~~s~dg~i~iwd~~~~--------------------~~~~~~~~h~~~v~~l~~s--~~~~~l 551 (882)
.|+.+.+.. +...|+.+..||.|.+|.+++- ++...+. ....+|++++. ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 466665544 4578999999999999975211 0112222 34579999998 888899
Q ss_pred EEeeCCCcEEEEecCCC--ce-eeEeecCcCCEEEEEEEeCC-----C-EEEEeecCCeEEEEEc
Q 002782 552 ITASGDKTIKIWSISDG--SC-LKTFEGHTSSVLRASFLTRG-----A-QIVSCGADGLVKLWTV 607 (882)
Q Consensus 552 ~s~~~d~~i~iwd~~~~--~~-~~~~~~h~~~v~~~~~s~~g-----~-~l~s~~~dg~i~iwd~ 607 (882)
|+++....|.||-.... +. ...-..|...|.+++|.++. . +|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99998888888875432 11 11111256678899997653 2 7888899999988887
No 440
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.43 E-value=0.5 Score=44.16 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=26.3
Q ss_pred CCEEEEEEcCCC------CEEEEEeCCCcEEEEECCCC
Q 002782 103 GPAIGMACHPSG------GLLATAGADRKVLVWDVDGG 134 (882)
Q Consensus 103 ~~V~~l~fs~~~------~~lasg~~dg~v~vwd~~~~ 134 (882)
..|.+++|||.| -+||+.+.++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 489999999954 37888899999999987643
No 441
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.31 E-value=2.5 Score=45.26 Aligned_cols=98 Identities=16% Similarity=0.218 Sum_probs=57.2
Q ss_pred CCceEEccCCCEEEEEe-------------CCeEEEEEcCC--Cc--eeeeecCCCccEEEEEEcCCCCEEEEEeCCCcE
Q 002782 22 GGPLVVSSDGSFIACAC-------------GESINIVDLSN--AS--IKSTIEGGSDTITALALSPDDKLLFSSGHSREI 84 (882)
Q Consensus 22 g~~va~s~dg~~la~~~-------------~~~I~i~d~~~--~~--~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i 84 (882)
...+++.++|+++++-. ++.|.+++-.+ |. ....+...-...+.+++.++| +++ +......
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEE
Confidence 44799999999877642 23788887553 33 223343333456889999999 444 4444333
Q ss_pred EEEECCC-----Ce--eE-EEeec----CCCCEEEEEEcCCCCEEEEEe
Q 002782 85 RVWDLST-----LK--CL-RSWKG----HDGPAIGMACHPSGGLLATAG 121 (882)
Q Consensus 85 ~iwd~~~-----~~--~~-~~~~~----h~~~V~~l~fs~~~~~lasg~ 121 (882)
++.|... ++ .+ ..+.. +......++|.|||.+.++-+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3434421 11 12 22322 234577899999998766544
No 442
>PRK10115 protease 2; Provisional
Probab=93.23 E-value=21 Score=41.80 Aligned_cols=234 Identities=10% Similarity=0.029 Sum_probs=110.8
Q ss_pred eecCCCEEEEEeecCC----eEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCC-----CeEEEEecCCCCC
Q 002782 406 ALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSD 476 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~d-----g~i~~wd~~~~~~ 476 (882)
++|+++.+.++...+| .+++.|+.++..+...-... -..++|+++++.++++...+ ..|..+++.+...
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence 7889988555544444 58888998886432221111 14589999988666665433 3566667665421
Q ss_pred CCCCcccccchhhhhhcCCCee-EEEEcCCCcEEEEEcC---CCcEEEEeCC--CceeEEEEecccCceEEEEEcCCCCE
Q 002782 477 DAEQPMNLKAKAVVAAHGKDIN-SLAVAPNDSLVCTGSQ---DRTACVWRLP--DLVSVVTFRGHKRGIWSVEFSPVDQV 550 (882)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~la~~s~---dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~s~~~~~ 550 (882)
.. ..+......... .+..+.++++++..+. ++.+.+++.. ++.....+.........+. ...+.+
T Consensus 212 ~d--------~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 212 QD--------ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred HC--------eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 11 111111111222 3344557777665443 3468888843 3333222222222222222 333333
Q ss_pred EEEeeC-CCc--EEEEecCCCceeeEeecC-c-CCEEEEEEEeCCCEEEEeecCCeEEE--EEcCCCeeEEEec-cCCCc
Q 002782 551 VITASG-DKT--IKIWSISDGSCLKTFEGH-T-SSVLRASFLTRGAQIVSCGADGLVKL--WTVRTGECIATYD-KHEDK 622 (882)
Q Consensus 551 l~s~~~-d~~--i~iwd~~~~~~~~~~~~h-~-~~v~~~~~s~~g~~l~s~~~dg~i~i--wd~~~~~~~~~~~-~h~~~ 622 (882)
++.... ... |...++.+......+..+ . ..+..+.+. .+..+++...+|.-++ ++..++ .+..+. .....
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 333222 123 333344421222344444 3 357777776 3345556666775444 454333 333333 22222
Q ss_pred eEEEEEc--CCCC-EEEEEeC---CCCEEEEECCCH
Q 002782 623 IWALAVG--KKTE-MFATGGS---DALVNLWHDSTA 652 (882)
Q Consensus 623 v~~l~~s--~~~~-~l~s~~~---dg~i~iw~~~~~ 652 (882)
+..+.++ +++. ++++.++ -+.+..++..++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 3333344 3333 4444332 355677776654
No 443
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.07 E-value=6.2 Score=37.44 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=66.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCC---C---cEEEE-ECCC-
Q 002782 64 TALALSPDDKLLFSSGHSREIRVWDLS--TLKCLRSWKGHDGPAIGMACHPSGGLLATAGAD---R---KVLVW-DVDG- 133 (882)
Q Consensus 64 ~~l~~spd~~~las~~~dg~i~iwd~~--~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~d---g---~v~vw-d~~~- 133 (882)
.+++-++. +.|..+.....|.+|++. ..+.+.+|..- +.|..+.++..|+||+|--.+ . .+++| ||+.
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 33444432 344444556789999988 44566777654 899999999999999996432 2 56664 3321
Q ss_pred ---CeEEE-EeecC---------------------CCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCe
Q 002782 134 ---GFCTH-YFKGH---------------------KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (882)
Q Consensus 134 ---~~~~~-~~~~h---------------------~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~ 179 (882)
...+. ++-|| +.++.+++..|-... |+.|+. +.+.+|.+..+.
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~--LlVg~~-~~l~lf~l~~~~ 166 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN--LLVGCG-NKLVLFTLKYQT 166 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC--EEEEcC-CEEEEEEEEEEE
Confidence 12111 22222 234566666665444 555554 568889775443
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=93.06 E-value=5.6 Score=44.43 Aligned_cols=167 Identities=9% Similarity=0.025 Sum_probs=81.1
Q ss_pred eEEEEEcCCCcee--eeecCCCccEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEE--EeecCCCCEEEEEEcCCC
Q 002782 41 SINIVDLSNASIK--STIEGGSDTITALALSPDDKLLFSSGHS--REIRVWDLSTLKCLR--SWKGHDGPAIGMACHPSG 114 (882)
Q Consensus 41 ~I~i~d~~~~~~~--~~l~~~~~~I~~l~~spd~~~las~~~d--g~i~iwd~~~~~~~~--~~~~h~~~V~~l~fs~~~ 114 (882)
.+..||+.+++-. ..+.........+ .-+|...++||.+ ..+..||..+++-.. .+..... ...+..-+|
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~--~~~~~~~~g 363 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC--NPAVASINN 363 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc--ccEEEEECC
Confidence 4778898876532 2222222222222 2467777777753 357888876553222 2221111 112223367
Q ss_pred CEEEEEeCC---CcEEEEECCCCeEEEEee--cCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEE--EEecCc
Q 002782 115 GLLATAGAD---RKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV--ATLDKH 187 (882)
Q Consensus 115 ~~lasg~~d---g~v~vwd~~~~~~~~~~~--~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~--~~l~~h 187 (882)
+..+.||.+ ..+..||..++.-...-. ...... +++ .-+ + .+.+.| |.+.+||..+++-. ..+...
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~-~-~IYv~G---G~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFG-R-RLFLVG---RNAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EEC-C-EEEEEC---CceEEecCCCCcEeEcCCCCCC
Confidence 777777754 347789987765433211 011111 222 222 2 334444 45778988776533 222222
Q ss_pred ccceEEEEEccCCCEEEEEeCC-----CeEEEEecCCc
Q 002782 188 FSRVTSMAITSDGSTLISAGRD-----KVVNLWDLRDY 220 (882)
Q Consensus 188 ~~~v~~l~~s~~~~~l~s~~~d-----g~i~vwd~~~~ 220 (882)
....... .-+|+..+.||.+ ..+..||..+.
T Consensus 437 r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 437 RDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 2222222 2366777777754 34556665543
No 445
>PRK13684 Ycf48-like protein; Provisional
Probab=92.92 E-value=14 Score=38.89 Aligned_cols=150 Identities=15% Similarity=0.186 Sum_probs=87.2
Q ss_pred CCCeeEEEEcCCCcEEEEEcCCCcEEE-EeCCCceeEEEE-ecccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCcee
Q 002782 494 GKDINSLAVAPNDSLVCTGSQDRTACV-WRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 571 (882)
Q Consensus 494 ~~~i~~~~~s~~~~~la~~s~dg~i~i-wd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 571 (882)
...+.++.+.|++.+++++. .|.+.. ++ ..++.-... .+-...++++.+.++++.++++. .|.+++=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence 44678899999988777765 454432 22 222222222 23456789999999998877654 476653234444332
Q ss_pred eEeec----CcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEec---cCCCceEEEEEcCCCCEEEEEeCCCCE
Q 002782 572 KTFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSDALV 644 (882)
Q Consensus 572 ~~~~~----h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~dg~i 644 (882)
..... ....+..+.+.+++..+ .++.+|.+. ...+.|+--.... .-......+.|..+++.++ .|..|.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence 22111 12347778888877654 455677555 3445555433332 2223577777776666544 6667888
Q ss_pred EEEEC
Q 002782 645 NLWHD 649 (882)
Q Consensus 645 ~iw~~ 649 (882)
.-|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 77754
No 446
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.79 E-value=1.9 Score=41.92 Aligned_cols=71 Identities=13% Similarity=0.278 Sum_probs=52.6
Q ss_pred EcCCCCEEEEeeCCCcEEEEecCCCceeeEe-------e-------cCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCC
Q 002782 544 FSPVDQVVITASGDKTIKIWSISDGSCLKTF-------E-------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (882)
Q Consensus 544 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~-------~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 609 (882)
+..++.+|++.+.+|.+++||+.+++++..- . .....|..+.++.+|.-+++-+ +|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4456889999999999999999998765332 1 2456788888888888777655 57889998765
Q ss_pred CeeEEE
Q 002782 610 GECIAT 615 (882)
Q Consensus 610 ~~~~~~ 615 (882)
+..+..
T Consensus 97 ~~W~~v 102 (219)
T PF07569_consen 97 GCWIRV 102 (219)
T ss_pred ceeEEe
Confidence 554443
No 447
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.64 E-value=0.067 Score=59.79 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=59.7
Q ss_pred eecccCCceEEEEEeCCCCcEEEEEEcCCcEEEEeCC--Cceeeee-----eeCCCcceEEeeeeeecCCCEEEEEeecC
Q 002782 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS--SMSCSYV-----LAGHSEIVLCLDTCALSSGKILIVTGSKD 420 (882)
Q Consensus 348 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 420 (882)
...|+.+.+.++.|-..+...+. ..-|.+.+|++. .|+.... .......+.-+.||.....+..+..+.++
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 45677788888888554433333 334778888875 3333222 22233344455555544444557778888
Q ss_pred CeEEEEeCCCceEEeeeecccccEEEEEEccCC
Q 002782 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (882)
Q Consensus 421 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~ 453 (882)
+.+++.+.++... ..+.+|...+..++|-..|
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhc
Confidence 8888877655432 3344577766666655443
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.59 E-value=0.24 Score=51.88 Aligned_cols=268 Identities=13% Similarity=0.130 Sum_probs=147.2
Q ss_pred eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCccccc
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 485 (882)
+.+.+.. ++.++.+..+..||-...... .. ...+....++|..+++..++.+-..+.+.+|++.....
T Consensus 42 w~~e~~n-lavaca~tiv~~YD~agq~~l-e~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt--------- 109 (615)
T KOG2247|consen 42 WRPEGHN-LAVACANTIVIYYDKAGQVIL-EL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT--------- 109 (615)
T ss_pred EecCCCc-eehhhhhhHHHhhhhhcceec-cc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH---------
Confidence 6677777 777777777888875443222 11 23344556788888876777888899999999975421
Q ss_pred chhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeCCCcEEEEec
Q 002782 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (882)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~ 565 (882)
.....+....-.-+.|++.+..++.+...|.+.|++..+...+...-.|...++++++.+.+. .+.++.|..+.+-..
T Consensus 110 -qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 110 -QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVTTQ 187 (615)
T ss_pred -HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHHhhh
Confidence 000011111112267889889999999999999999877766655555999999999998654 455555554443332
Q ss_pred CCCceeeEee--cCcCCEE--EE---EEEeCCCEEEEeecCCeEEEE--Ec--CCCeeEEEeccCCCceEEEEEcCCCCE
Q 002782 566 SDGSCLKTFE--GHTSSVL--RA---SFLTRGAQIVSCGADGLVKLW--TV--RTGECIATYDKHEDKIWALAVGKKTEM 634 (882)
Q Consensus 566 ~~~~~~~~~~--~h~~~v~--~~---~~s~~g~~l~s~~~dg~i~iw--d~--~~~~~~~~~~~h~~~v~~l~~s~~~~~ 634 (882)
. ++.....+ +...... .+ .|..-|..+.+.-. |.+.+. .+ ..+..--.++.-.+-+.|..|--||..
T Consensus 188 e-geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~i 265 (615)
T KOG2247|consen 188 E-GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGYI 265 (615)
T ss_pred c-cceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcCCCCccceEeeecCCceeEEEEeccccc
Confidence 1 11111111 1111000 01 12233334433221 111110 11 112111145555677888999888864
Q ss_pred EEEEeCCCCEEEEECCCHHHHHHHhhhhHHHHhccchHHHhhhccchHHHHHHHhhcCCc
Q 002782 635 FATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRP 694 (882)
Q Consensus 635 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~ 694 (882)
.-+-.-|.|..-...+++...+...+. ...+.+..+....-..+|+.++.+.++-
T Consensus 266 -~igf~ag~iV~iS~h~aeLgaeffqkl----dy~~aLqsiavsqcvnkaftlgdn~nkv 320 (615)
T KOG2247|consen 266 -LIGFDAGYIVSISAHNAELGAEFFQKL----DYRGALQSIAVSQCVNKAFTLGDNMNKV 320 (615)
T ss_pred -cccccceeEEEEeccchHHHHHHHHHh----hHHhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 334445555555555555544433322 2233444444555566666666554443
No 449
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.56 E-value=1.2 Score=51.89 Aligned_cols=144 Identities=17% Similarity=0.093 Sum_probs=92.7
Q ss_pred ccEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEE-----EeecC------CCCEEEEEEcCCCCE-EEEEeCCCcE
Q 002782 61 DTITALALSPDDKLLFSSGHS--REIRVWDLSTLKCLR-----SWKGH------DGPAIGMACHPSGGL-LATAGADRKV 126 (882)
Q Consensus 61 ~~I~~l~~spd~~~las~~~d--g~i~iwd~~~~~~~~-----~~~~h------~~~V~~l~fs~~~~~-lasg~~dg~v 126 (882)
-+|..+...+|+...++.... -.|..||+.+...-+ -+..| ..-..++.|.|.-.. .|....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 467788888898877665443 378899987543221 12222 234567788875432 4555678888
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecC----cccceEEEEEccCCCE
Q 002782 127 LVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK----HFSRVTSMAITSDGST 202 (882)
Q Consensus 127 ~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~----h~~~v~~l~~s~~~~~ 202 (882)
+|..+.-......--.....+++++|+|.|.. ++.|-..|++.-|-.. .+....+.+ ....|.+++|-....+
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQ--l~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQ--LFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccce--eeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeE
Confidence 88877433222111124567899999998877 9999999999988653 333333322 1367999999887777
Q ss_pred EEEEe
Q 002782 203 LISAG 207 (882)
Q Consensus 203 l~s~~ 207 (882)
+++-+
T Consensus 258 lvvy~ 262 (1405)
T KOG3630|consen 258 LVVYG 262 (1405)
T ss_pred EEEec
Confidence 76544
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=9.9 Score=35.58 Aligned_cols=171 Identities=8% Similarity=-0.001 Sum_probs=88.0
Q ss_pred EEEEEeec--CCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCcccccchhh
Q 002782 412 ILIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (882)
Q Consensus 412 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 489 (882)
.++.+.+. ...|+.||+.+++.+....-....+-.=-...-+..+..-.-.+|.-..+|.++.. .
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~-------------~ 123 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE-------------E 123 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh-------------h
Confidence 33444443 44799999999987765432211111111112223344444566666777765432 1
Q ss_pred hhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEEec--ccC---ceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 002782 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HKR---GIWSVEFSPVDQVVITASGDKTIKIWS 564 (882)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~~~--h~~---~v~~l~~s~~~~~l~s~~~d~~i~iwd 564 (882)
+..+.-.-..-....|++-|..++...+++.-|..+.....++.- ... .+.-+.|- ||...|-.-.+..|...+
T Consensus 124 lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 124 LGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred hcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence 111221112223334666677776666777777665544333221 112 22334443 455555555555566667
Q ss_pred cCCCceeeEee------------cCcCCEEEEEEEeCCCE-EEEe
Q 002782 565 ISDGSCLKTFE------------GHTSSVLRASFLTRGAQ-IVSC 596 (882)
Q Consensus 565 ~~~~~~~~~~~------------~h~~~v~~~~~s~~g~~-l~s~ 596 (882)
..+|+.+..+. .|.+-.+.+++.|++.. +++|
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 77777665543 24456778899888744 4443
No 451
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=92.12 E-value=16 Score=37.61 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=75.2
Q ss_pred EEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCeeEEEeec--CC--------------------
Q 002782 63 ITALALSPDDKLLFSSG------------------HSREIRVWDLSTLKCLRSWKG--HD-------------------- 102 (882)
Q Consensus 63 I~~l~~spd~~~las~~------------------~dg~i~iwd~~~~~~~~~~~~--h~-------------------- 102 (882)
...+.+.|+|..|++.. .|+.+.--|++|++.+..++. |-
T Consensus 59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~ 138 (299)
T PF14269_consen 59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS 138 (299)
T ss_pred ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence 45566778888777331 245677778888988887643 10
Q ss_pred -----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC-cE--EEEEEecCCCccEEEEEeCCCcEEEEE
Q 002782 103 -----GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG-VV--SSILFHPDTDKSLLFSGSDDATVRVWD 174 (882)
Q Consensus 103 -----~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~-~V--~~l~f~~~~~~~~l~sgs~dg~I~vwd 174 (882)
-.|.++...++|.+|+|.-.-..|.+.|..+|+.+..+.|..+ .. ....|+-+.+..++-.+..++.|.++|
T Consensus 139 ~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 139 FPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred CCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence 1367788888999999998889999999999999988876522 11 112233333333344445677777777
Q ss_pred C
Q 002782 175 L 175 (882)
Q Consensus 175 ~ 175 (882)
-
T Consensus 219 N 219 (299)
T PF14269_consen 219 N 219 (299)
T ss_pred C
Confidence 6
No 452
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=92.08 E-value=24 Score=39.56 Aligned_cols=199 Identities=18% Similarity=0.187 Sum_probs=106.0
Q ss_pred cccccCCceEEccCCCEEEEEeCC------eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCc---EEEE
Q 002782 17 QQFYGGGPLVVSSDGSFIACACGE------SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE---IRVW 87 (882)
Q Consensus 17 ~~~y~g~~va~s~dg~~la~~~~~------~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~---i~iw 87 (882)
..||.-|.+++|||++++|.+.+. .+++.|+.+|+.+...- .+....++|.+|++.|.-...|.. =++|
T Consensus 126 ~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~ 203 (682)
T COG1770 126 HDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAADGKTLFYTRLDENHRPDKVW 203 (682)
T ss_pred ccceeeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEecCCCeEEEEEEcCCCCcceEE
Confidence 357888899999999999998753 59999999998654322 234678999999988775544321 2233
Q ss_pred --ECCC----CeeEEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEE--eecCCCcEEEEEEecCC
Q 002782 88 --DLST----LKCLRSWKGHDGPAIGMACHPSGGLLATAGAD---RKVLVWDVDGGFCTHY--FKGHKGVVSSILFHPDT 156 (882)
Q Consensus 88 --d~~~----~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~d---g~v~vwd~~~~~~~~~--~~~h~~~V~~l~f~~~~ 156 (882)
.+.+ .+++..-+.. .--.++.-+.+..+|+....| +.+++.+.+....... ...-.+.-..+. ..+
T Consensus 204 ~h~~gt~~~~d~lvyeE~d~-~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~ 280 (682)
T COG1770 204 RHRLGTPGSSDELVYEEKDD-RFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGG 280 (682)
T ss_pred EEecCCCCCcceEEEEcCCC-cEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecC
Confidence 3322 1222222211 122333345566666654432 5577777755432111 110111111111 112
Q ss_pred CccEEEEEeCCC-cEEEEECC---CCeEEEEecCcccceEEEEEccCCCEEEEEeCCC---eEEEEecCCce
Q 002782 157 DKSLLFSGSDDA-TVRVWDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK---VVNLWDLRDYS 221 (882)
Q Consensus 157 ~~~~l~sgs~dg-~I~vwd~~---~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg---~i~vwd~~~~~ 221 (882)
+. +++-...+| ..++.... +...-..+..|...+.--.|+--..+|+...+++ .|++++..+++
T Consensus 281 d~-f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~ 351 (682)
T COG1770 281 DR-FYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGE 351 (682)
T ss_pred cE-EEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCc
Confidence 22 233333333 34444322 2223345556766666666666667777766553 57777776554
No 453
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.97 E-value=3.3 Score=41.86 Aligned_cols=114 Identities=11% Similarity=0.213 Sum_probs=72.1
Q ss_pred CcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCeEEEEeec-----CCCcEEEE
Q 002782 82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG------ADRKVLVWDVDGGFCTHYFKG-----HKGVVSSI 150 (882)
Q Consensus 82 g~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~------~dg~v~vwd~~~~~~~~~~~~-----h~~~V~~l 150 (882)
..|++||..+.+-...-.+-.+.|++|.|..+.++++.|. ....+..||+.+..... +.+ -.++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~-~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS-LGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee-cCCcccccCCCcEEEE
Confidence 4699999988776665556678999999997778888775 34678899998876432 332 24789888
Q ss_pred EEecCCCccEEEEEe-CCC--cEEEEECCCCeEEEE-ecCcccceEEEEE
Q 002782 151 LFHPDTDKSLLFSGS-DDA--TVRVWDLLAKKCVAT-LDKHFSRVTSMAI 196 (882)
Q Consensus 151 ~f~~~~~~~~l~sgs-~dg--~I~vwd~~~~~~~~~-l~~h~~~v~~l~~ 196 (882)
.+..+....+.+.|. .+| .|..||=.+...+.. .......|..+.+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 886554444555554 333 456665444443333 2222334554443
No 454
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.70 E-value=0.82 Score=30.49 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCe
Q 002782 103 GPAIGMACHPSG---GLLATAGADRKVLVWDVDGGF 135 (882)
Q Consensus 103 ~~V~~l~fs~~~---~~lasg~~dg~v~vwd~~~~~ 135 (882)
+.|.++.|||+. .+|+..-.-|.|.|+|+.++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f 36 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF 36 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence 468999999854 488888788999999998643
No 455
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.41 E-value=0.86 Score=47.24 Aligned_cols=155 Identities=13% Similarity=0.154 Sum_probs=95.2
Q ss_pred CceEEccCCCEEEEEeCCeEEEEEcCCCcee-eeecCC--C---ccEE-EEEEcCCCCEEEEEeCCCcEEEE-ECCCC--
Q 002782 23 GPLVVSSDGSFIACACGESINIVDLSNASIK-STIEGG--S---DTIT-ALALSPDDKLLFSSGHSREIRVW-DLSTL-- 92 (882)
Q Consensus 23 ~~va~s~dg~~la~~~~~~I~i~d~~~~~~~-~~l~~~--~---~~I~-~l~~spd~~~las~~~dg~i~iw-d~~~~-- 92 (882)
..+-+.|||++|++-.+..+.|+++.+.... +.+-.+ . ..|+ ++.+-..|.-|.+++.||.|.-| |+..+
T Consensus 224 ~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~ 303 (733)
T COG4590 224 SQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQ 303 (733)
T ss_pred HhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCC
Confidence 4688899999999999999999988665422 122111 1 1222 22233456668888889999887 44322
Q ss_pred ---eeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCc
Q 002782 93 ---KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (882)
Q Consensus 93 ---~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~ 169 (882)
..++.++-...++..+.-..+.+-+++-+..|++.++.-...+.+..-+ --..+.-++++|.+++ +++ -..|.
T Consensus 304 p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~--Ll~-e~~gk 379 (733)
T COG4590 304 PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAY--LLS-EDQGK 379 (733)
T ss_pred CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccch--hee-ecCCc
Confidence 2333344334555555544455567777788888887765544332222 2235677889998775 544 34567
Q ss_pred EEEEECCCCeEE
Q 002782 170 VRVWDLLAKKCV 181 (882)
Q Consensus 170 I~vwd~~~~~~~ 181 (882)
|+++.+++..+-
T Consensus 380 i~~~~l~Nr~Pe 391 (733)
T COG4590 380 IRLAQLENRNPE 391 (733)
T ss_pred eEEEEecCCCCC
Confidence 999888766543
No 456
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.39 E-value=5.7 Score=41.62 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=88.2
Q ss_pred ceEEccCCCEEEEEeCCeEEEEEcCCC--ceeeee-cCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE----E
Q 002782 24 PLVVSSDGSFIACACGESINIVDLSNA--SIKSTI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL----R 96 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~~I~i~d~~~~--~~~~~l-~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~----~ 96 (882)
.+-|....+.|++...+.+.=|-++.. ...-.+ ....++|.++.||+|.+.||+--.+.+|.+++....+.. .
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 344554455555555554444444322 222222 235679999999999999999999999999988433322 2
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCcEEEEEEecCCCccEEEEE
Q 002782 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHPDTDKSLLFSG 164 (882)
Q Consensus 97 ~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~f~~~~~~~~l~sg 164 (882)
+-+..+..|....|+.+ .-+|..+..| +-+|-+... +.++..+.|+..|.--.|.++..-.+|+++
T Consensus 107 ~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 22334556888999876 4566655444 677766543 234455678888999999998665444444
No 457
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.19 E-value=31 Score=39.09 Aligned_cols=54 Identities=13% Similarity=0.133 Sum_probs=39.7
Q ss_pred cCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCc-CCEEEEEEEeC
Q 002782 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTR 589 (882)
Q Consensus 536 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~ 589 (882)
...+..+..||+.++|+--..+|.|.+-+++..+++..+.... .+...++|..+
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 4568889999999999999999999999988877777766211 22224555543
No 458
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.96 E-value=2.4 Score=46.90 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=51.4
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002782 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (882)
Q Consensus 59 ~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~ 132 (882)
..+.++++.-+|.|+-++.+..||.|++|++...+....+. ...|-..+.|...| |++...|..+.-|.-+
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc
Confidence 34568899999999999999999999999997765433322 22444566676666 6666677878778643
No 459
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.92 E-value=26 Score=37.68 Aligned_cols=197 Identities=11% Similarity=0.055 Sum_probs=109.6
Q ss_pred ccCCCEEEEEeCCeEEEEEcCCCceeeeecCC--CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC-CC
Q 002782 28 SSDGSFIACACGESINIVDLSNASIKSTIEGG--SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-GP 104 (882)
Q Consensus 28 s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~--~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~-~~ 104 (882)
-.||+..+....+.|.-.|..++..+-....- ...+..-.+..+|+ |..++.++.+...|..+|+.+....... ..
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 34565555445557777888888755322211 12333333334776 7778888899999999999998887665 11
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC---cEEEEEEecCCCccEEEEEeC--CCcEEEEECCCCe
Q 002782 105 AIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG---VVSSILFHPDTDKSLLFSGSD--DATVRVWDLLAKK 179 (882)
Q Consensus 105 V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~---~V~~l~f~~~~~~~~l~sgs~--dg~I~vwd~~~~~ 179 (882)
+..-.+-.++ .+..++.++.+.-.|..+|........-.. .+..-.... ...++.+.. ++.+.-.|..+|.
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIA---SGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceee---cceEEEecCCCcceEEEEEccCCc
Confidence 2222222233 333334678888888888877665442211 111111111 122555555 6667777887877
Q ss_pred EEEEecCcc----cceEEEEEcc-----CCCEEEEEeCCCeEEEEecCCceeeeeecCc
Q 002782 180 CVATLDKHF----SRVTSMAITS-----DGSTLISAGRDKVVNLWDLRDYSCKLTVPTY 229 (882)
Q Consensus 180 ~~~~l~~h~----~~v~~l~~s~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 229 (882)
.......+. ..+....... .+..++.++.++.+...+..+++.+...+..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 665532111 1110011111 1123456667787888888888877776654
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.62 E-value=1.6 Score=42.50 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=47.6
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-------e-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 002782 68 LSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-------K-------GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133 (882)
Q Consensus 68 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~-------~-------~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~ 133 (882)
+..++.+|.+.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|....|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4567899999999999999999998765432 1 2446677777777777666654 46677777654
Q ss_pred C
Q 002782 134 G 134 (882)
Q Consensus 134 ~ 134 (882)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 461
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=9.5 Score=35.70 Aligned_cols=68 Identities=18% Similarity=0.056 Sum_probs=35.8
Q ss_pred EEEEEeC--CCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEE-EeCCCeEEEEecCCceeeeeec
Q 002782 160 LLFSGSD--DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS-AGRDKVVNLWDLRDYSCKLTVP 227 (882)
Q Consensus 160 ~l~sgs~--dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~ 227 (882)
++.+.+. ...|++||+.+++.+.+-.-....+..=-...-|.++.. .=.+|.-..+|.++.+++..++
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence 3555443 346999999999877654333212211111112223322 2246777777777766555444
No 462
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.60 E-value=15 Score=38.63 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=64.8
Q ss_pred CeeEEEEcCCCcEEEEEcCC------CcEEEEeCCCceeEEEEe---------------cccCceEEEEEcCCCCEEEEe
Q 002782 496 DINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSVVTFR---------------GHKRGIWSVEFSPVDQVVITA 554 (882)
Q Consensus 496 ~i~~~~~s~~~~~la~~s~d------g~i~iwd~~~~~~~~~~~---------------~h~~~v~~l~~s~~~~~l~s~ 554 (882)
+..++++.++|.++++.-.+ ..|..++.. +.....+. ..+....+++++|+|+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 56688888888888887777 778888866 54443331 145678999999999977665
Q ss_pred eC-----CC--c-------EEEEe--cCC-CceeeE----eec-----CcCCEEEEEEEeCCCEEEE
Q 002782 555 SG-----DK--T-------IKIWS--ISD-GSCLKT----FEG-----HTSSVLRASFLTRGAQIVS 595 (882)
Q Consensus 555 ~~-----d~--~-------i~iwd--~~~-~~~~~~----~~~-----h~~~v~~~~~s~~g~~l~s 595 (882)
.. |+ . ++++. ..+ +..... +.. ....+..+.+.+++++|+.
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 43 22 1 45544 443 322322 222 3467888999999987654
No 463
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.46 E-value=19 Score=35.41 Aligned_cols=224 Identities=10% Similarity=0.110 Sum_probs=130.3
Q ss_pred eecCCCEEEEEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCcEEEEeeCCCeEEEEecCCCCCCCCCccccc
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 485 (882)
..++|.. -.++...|.|--.|..+|+....--+....-..|...|++...+ +-+.. .|.-.|-.+... ..
T Consensus 69 papdG~V-Wft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wi-td~~~-aI~R~dpkt~ev-------t~ 138 (353)
T COG4257 69 PAPDGAV-WFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWI-TDTGL-AIGRLDPKTLEV-------TR 138 (353)
T ss_pred cCCCCce-EEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeE-ecCcc-eeEEecCcccce-------EE
Confidence 5577765 67777777888888888887776666666667778888877333 22221 333333322210 00
Q ss_pred chhhhhhcCCCeeEEEEcCCCcEEEEEcCC---------CcEEEEeCCCceeEEEEecccCceEEEEEcCCCCEEEEeeC
Q 002782 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQD---------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 556 (882)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~la~~s~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 556 (882)
............+...|.+.|.+-.++... +.|++|+... ......|+..|||..-++.-.
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyasla 208 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYASLA 208 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEecc
Confidence 111122234567889999999998887532 2344444332 234677889999998888877
Q ss_pred CCcEEEEecCCCceeeEeecC---cCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE-EEeccCCCceEEEEEcCCC
Q 002782 557 DKTIKIWSISDGSCLKTFEGH---TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI-ATYDKHEDKIWALAVGKKT 632 (882)
Q Consensus 557 d~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~s~~~ 632 (882)
+..|-..|..++. -..+... ...-..+--+|.|+.-+|....+.+..+|..+...+ ..+.+....-.++.+...+
T Consensus 209 gnaiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g 287 (353)
T COG4257 209 GNAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG 287 (353)
T ss_pred ccceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCC
Confidence 7888877776652 2222211 122333444567777777777788888886554421 2233333444556665555
Q ss_pred CEEEEEeCCCCEEEEECC
Q 002782 633 EMFATGGSDALVNLWHDS 650 (882)
Q Consensus 633 ~~l~s~~~dg~i~iw~~~ 650 (882)
+...+--.-|.|.-+|-.
T Consensus 288 rVW~sea~agai~rfdpe 305 (353)
T COG4257 288 RVWLSEADAGAIGRFDPE 305 (353)
T ss_pred cEEeeccccCceeecCcc
Confidence 555544444555555433
No 464
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.39 E-value=26 Score=36.86 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=43.0
Q ss_pred CCCeeEEEEcC-------CCcEEEEEcCCCcEEEEeCCCceeEEE---E-ecccCceEEEEEcCCCCEEEEeeCCCcEE
Q 002782 494 GKDINSLAVAP-------NDSLVCTGSQDRTACVWRLPDLVSVVT---F-RGHKRGIWSVEFSPVDQVVITASGDKTIK 561 (882)
Q Consensus 494 ~~~i~~~~~s~-------~~~~la~~s~dg~i~iwd~~~~~~~~~---~-~~h~~~v~~l~~s~~~~~l~s~~~d~~i~ 561 (882)
...+..+.|-. .|.+++..-..+.|....+.....+.. + ......+..+++.|||.++++.+.+|.|.
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 35566677654 456777766667788877764433222 2 22344799999999999999888888764
No 465
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.28 E-value=12 Score=32.62 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=72.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCe--------EEEEeecCCCcEEEEEE---ecCCCccEEEEEeCCCcEEEEE
Q 002782 106 IGMACHPSGGLLATAGADRKVLVWDVDGGF--------CTHYFKGHKGVVSSILF---HPDTDKSLLFSGSDDATVRVWD 174 (882)
Q Consensus 106 ~~l~fs~~~~~lasg~~dg~v~vwd~~~~~--------~~~~~~~h~~~V~~l~f---~~~~~~~~l~sgs~dg~I~vwd 174 (882)
..-.|+....-|+.++.-|.|.|.+..... .+..+. -...|++++- .|+..+..|+.|+.. .+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEE
Confidence 344677777789998889999999875432 233333 4566777764 345556667777765 499999
Q ss_pred CCCCeEEEEecCcccceEEEEEc---cCCCEEEEEeCCCeEEEEecCCceeee
Q 002782 175 LLAKKCVATLDKHFSRVTSMAIT---SDGSTLISAGRDKVVNLWDLRDYSCKL 224 (882)
Q Consensus 175 ~~~~~~~~~l~~h~~~v~~l~~s---~~~~~l~s~~~dg~i~vwd~~~~~~~~ 224 (882)
+....-+..-.- ...|.++.+- ....-++..+.+..|.-||....+...
T Consensus 80 V~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 80 VENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred cccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 988765543322 2556666662 222345555556777777776555443
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.26 E-value=27 Score=36.90 Aligned_cols=139 Identities=12% Similarity=0.123 Sum_probs=88.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE---
Q 002782 64 TALALSPDDKLLFSSGHSREIRVWDLSTL--KCLRSW-KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT--- 137 (882)
Q Consensus 64 ~~l~~spd~~~las~~~dg~i~iwd~~~~--~~~~~~-~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~--- 137 (882)
+.+-|...++.|+ +.++|.+.=|-+... ...-++ ....++|.++.||+|.+.||+--.+.+|.+.+.......
T Consensus 26 ngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 3344443344333 334455555654322 122222 235679999999999999999999999999998543322
Q ss_pred -EEeecCCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCC-CeEEEEecCcccceEEEEEccCCCEEEEEe
Q 002782 138 -HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-KKCVATLDKHFSRVTSMAITSDGSTLISAG 207 (882)
Q Consensus 138 -~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~-~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~ 207 (882)
+.-+..+..|...+|+.+. . ++..+..| +-+|-... .+.++..+.|.-.|....|.++.+.++.++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~-e--~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSST-E--IAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHhccCcceeEEEEEecCe-e--EEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 2223345568899998763 3 66666655 77776543 334555667888899999999887655444
No 467
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.78 E-value=5.9 Score=42.11 Aligned_cols=143 Identities=17% Similarity=0.262 Sum_probs=93.3
Q ss_pred CCCCEEE-EEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCE-------EEEEeCCCcEEEEECC-CCeEEEEe
Q 002782 70 PDDKLLF-SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGL-------LATAGADRKVLVWDVD-GGFCTHYF 140 (882)
Q Consensus 70 pd~~~la-s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~-------lasg~~dg~v~vwd~~-~~~~~~~~ 140 (882)
.|..+|. .|+....++--|++-|+.+-.|..|... -+.|.|+.++ -+.|-.+..|.-.|.. .|..+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3455554 4555678888899999999999988766 5778875431 2334455556656653 23222111
Q ss_pred --ec--CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEEEEe
Q 002782 141 --KG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216 (882)
Q Consensus 141 --~~--h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd 216 (882)
+. ......+..-.. ..+++.++..|-|++||--..+....+++-...|..+..+.+|+++++.|.. .+.+-|
T Consensus 555 esKdY~tKn~Fss~~tTe---sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d 630 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTE---SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTD 630 (776)
T ss_pred eehhcccccccccccccc---CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEe
Confidence 11 112233333222 2459999999999999976555556677777899999999999999888854 566666
Q ss_pred cC
Q 002782 217 LR 218 (882)
Q Consensus 217 ~~ 218 (882)
+.
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 53
No 468
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.77 E-value=9.5 Score=41.87 Aligned_cols=164 Identities=9% Similarity=0.153 Sum_probs=67.9
Q ss_pred eEEccCCCEEEEEeCCeEEEEEc-------CCCceeeee-cCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eE
Q 002782 25 LVVSSDGSFIACACGESINIVDL-------SNASIKSTI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CL 95 (882)
Q Consensus 25 va~s~dg~~la~~~~~~I~i~d~-------~~~~~~~~l-~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~-~~ 95 (882)
..+.|.-.+..+..++.+.||+. .++.....+ .++...+.++ +++....|.|+.|+--+.. .+
T Consensus 31 ~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I~~~l~~ 102 (422)
T PF08801_consen 31 MGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESISHLLVL 102 (422)
T ss_dssp EEEE-TTSEEEEEETTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-TT-TT--
T ss_pred EEEEcccCEEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccchhhhhc
Confidence 45567777888889999999998 444444444 4444554444 3455667888888643221 11
Q ss_pred EEe-------------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEE
Q 002782 96 RSW-------------KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLF 162 (882)
Q Consensus 96 ~~~-------------~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~ 162 (882)
.+. ......+......+.+ ++.+..+|.|..........+..+ .+.+...
T Consensus 103 ~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~--~I~~ts~GRif~~~~~~~~g~~~l----------~y~~~~~----- 165 (422)
T PF08801_consen 103 ATPSQISLLGVSYSELLSGELSTSLTNVEPSG--FIVSTSTGRIFFLGIRDSNGKYEL----------SYQQLSG----- 165 (422)
T ss_dssp EEEE------------------EEEEEEETTT--EEEEETT--EEEEEE-TTS-EEEE----------E-TT--------
T ss_pred CccccccccccceeeecCCceEEECCCCceEE--EEEECCCCeEEEEeCCCCCCcEEE----------EEEcCcC-----
Confidence 111 1011111112234444 444445566655554442222222 2211100
Q ss_pred EEeCCCcEEEEECCCCeEEEE----ecCcccceEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 002782 163 SGSDDATVRVWDLLAKKCVAT----LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (882)
Q Consensus 163 sgs~dg~I~vwd~~~~~~~~~----l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~ 219 (882)
.........+..... .......|.++...+..+.+++...+|.|.+|++..
T Consensus 166 ------~~~~i~~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 166 ------RCSKINHTSSSIFSSLLPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --------------------------------EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ------CccccccccCceeccccCCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 000000000000000 111234488999999889999999999999999974
No 469
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.26 E-value=13 Score=37.62 Aligned_cols=113 Identities=19% Similarity=0.281 Sum_probs=68.5
Q ss_pred eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCeeEEEeec-----CCCCEEEEE
Q 002782 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG------HSREIRVWDLSTLKCLRSWKG-----HDGPAIGMA 109 (882)
Q Consensus 41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~------~dg~i~iwd~~~~~~~~~~~~-----h~~~V~~l~ 109 (882)
.|++||..+.+=...-.+-.+.|++|.|..+.+++++|. ....+..||+.+..-. .+.+ -.++|..+.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEEE
Confidence 699999887765554445567899999997777777773 3557889999876532 2322 247888888
Q ss_pred EcC-CCC-EEEEEe-CCC--cEEEEECCCCeEEEE-eecCCCcEEEEEEec
Q 002782 110 CHP-SGG-LLATAG-ADR--KVLVWDVDGGFCTHY-FKGHKGVVSSILFHP 154 (882)
Q Consensus 110 fs~-~~~-~lasg~-~dg--~v~vwd~~~~~~~~~-~~~h~~~V~~l~f~~ 154 (882)
+.. |+. ..+.|. .++ .|..||=..-..+.. ..+....|..+.+.|
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 743 333 343433 333 455665433332222 122244566666654
No 470
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.00 E-value=0.05 Score=56.65 Aligned_cols=145 Identities=19% Similarity=0.303 Sum_probs=99.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEeec
Q 002782 64 TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLAT-AGADRKVLVWDVDGGFCTHYFKG 142 (882)
Q Consensus 64 ~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~las-g~~dg~v~vwd~~~~~~~~~~~~ 142 (882)
-...|-|.+.-++.++.+..+..||-. ++...... ..+....|+|+.++..++. +-..+.+.+||+.+.....--.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345677877778999888889999843 33333332 3456678899998887665 44668999999976542211112
Q ss_pred CCCcEEEEEEecCCCccEEEEEeCCCcEEEEECCCCeEEEEecCcccceEEEEEccCCCEEEEEeCCCeEE
Q 002782 143 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213 (882)
Q Consensus 143 h~~~V~~l~f~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 213 (882)
....-.-+.|++.... ++.|...|.+.+++..+.+.+.....|...++++++.+.+. .+.++.|..+.
T Consensus 116 g~~s~sll~wsKg~~e--l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~ 183 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPE--LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLS 183 (615)
T ss_pred CcchHHHHhhccCCcc--ccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHH
Confidence 2222223678886655 88888999999999888777766666999999999998874 44455455443
No 471
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.95 E-value=1.9 Score=28.81 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=26.4
Q ss_pred ccEEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 002782 61 DTITALALSPDD---KLLFSSGHSREIRVWDLST 91 (882)
Q Consensus 61 ~~I~~l~~spd~---~~las~~~dg~i~iwd~~~ 91 (882)
+.|.++.|||+. .+||.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999854 5899998899999999985
No 472
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.84 E-value=6.3 Score=43.81 Aligned_cols=79 Identities=10% Similarity=0.153 Sum_probs=47.9
Q ss_pred cccCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeE
Q 002782 534 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613 (882)
Q Consensus 534 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~ 613 (882)
.|.+.|--+..+..+..|+.-...-.+.++|+.+...-..+ +-.+.+.|.|....++.-+.|..-..|++.-.+.+
T Consensus 335 nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~dnl~iwyn~d~peqv 410 (1636)
T KOG3616|consen 335 NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGDNLCIWYNIDAPEQV 410 (1636)
T ss_pred cccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCCceEEEecCCcchhh
Confidence 37777777777776666666555566788888654221111 12334788888777777666654444466655554
Q ss_pred EEe
Q 002782 614 ATY 616 (882)
Q Consensus 614 ~~~ 616 (882)
..+
T Consensus 411 t~~ 413 (1636)
T KOG3616|consen 411 TMF 413 (1636)
T ss_pred eee
Confidence 443
No 473
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.68 E-value=31 Score=35.34 Aligned_cols=163 Identities=15% Similarity=0.216 Sum_probs=90.4
Q ss_pred eEEEEEcCCCceeeeecCC------CccEEEEEEcCCC-----CEEEEEeC-CCcEEEEECCCCeeEEEeecCC------
Q 002782 41 SINIVDLSNASIKSTIEGG------SDTITALALSPDD-----KLLFSSGH-SREIRVWDLSTLKCLRSWKGHD------ 102 (882)
Q Consensus 41 ~I~i~d~~~~~~~~~l~~~------~~~I~~l~~spd~-----~~las~~~-dg~i~iwd~~~~~~~~~~~~h~------ 102 (882)
.|.+||+.+++.++++.-+ ...+..+++.... .++..+.. .+-|.|+|+.+++.-+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6999999999988776532 4567888887632 34444433 4689999999988766554321
Q ss_pred -------------CCEEEEEEcC---CCCEEEEEeCCCcEEEEECCC-----C---------eEEEEeecCCCcEEEEEE
Q 002782 103 -------------GPAIGMACHP---SGGLLATAGADRKVLVWDVDG-----G---------FCTHYFKGHKGVVSSILF 152 (882)
Q Consensus 103 -------------~~V~~l~fs~---~~~~lasg~~dg~v~vwd~~~-----~---------~~~~~~~~h~~~V~~l~f 152 (882)
..+..++.+| ++++|....-.+ -.+|.+.+ . ..+..+-...+....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 2355556654 555555544322 12332211 0 011122111235566777
Q ss_pred ecCCCccEEEEEeCCCcEEEEECCCC------eEEEEecCcccceEEEEEcc--CCCEEEEE
Q 002782 153 HPDTDKSLLFSGSDDATVRVWDLLAK------KCVATLDKHFSRVTSMAITS--DGSTLISA 206 (882)
Q Consensus 153 ~~~~~~~~l~sgs~dg~I~vwd~~~~------~~~~~l~~h~~~v~~l~~s~--~~~~l~s~ 206 (882)
.+++ .++++--..+.|..|+.... +.+..-...-..+.++.+.+ +|.+.+.+
T Consensus 194 D~~G--~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNG--NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTT--EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCC--cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 7754 45777788899999998761 12221111235778888888 66555444
No 474
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.61 E-value=24 Score=37.05 Aligned_cols=157 Identities=15% Similarity=0.233 Sum_probs=95.2
Q ss_pred CCCeeEEEEcCCCcEEEEEcCCCc------EEEEeCCC--c--eeE-----EEEecccC--------ceEEEEEcCCCCE
Q 002782 494 GKDINSLAVAPNDSLVCTGSQDRT------ACVWRLPD--L--VSV-----VTFRGHKR--------GIWSVEFSPVDQV 550 (882)
Q Consensus 494 ~~~i~~~~~s~~~~~la~~s~dg~------i~iwd~~~--~--~~~-----~~~~~h~~--------~v~~l~~s~~~~~ 550 (882)
-+.+..+.+.|++..+++.+.+|. +..+++.. + ..+ ..+....+ ...+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 346788999865555666666776 55555443 1 111 11111111 3457888888888
Q ss_pred EEEeeCC------CcEEEEecCCCceeeEee---------------cCcCCEEEEEEEeCCCEEEEeec-----CC--e-
Q 002782 551 VITASGD------KTIKIWSISDGSCLKTFE---------------GHTSSVLRASFLTRGAQIVSCGA-----DG--L- 601 (882)
Q Consensus 551 l~s~~~d------~~i~iwd~~~~~~~~~~~---------------~h~~~v~~~~~s~~g~~l~s~~~-----dg--~- 601 (882)
+++.-.+ ..|+.++.. |+.+..+. ......-.++++|+|+.|+++.. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887777 789999876 76655442 12345788999999997766543 22 1
Q ss_pred ------EEEE--EcCC-Cee----EEEecc-----CCCceEEEEEcCCCCEEEE-----EeCCCCEEEEECCC
Q 002782 602 ------VKLW--TVRT-GEC----IATYDK-----HEDKIWALAVGKKTEMFAT-----GGSDALVNLWHDST 651 (882)
Q Consensus 602 ------i~iw--d~~~-~~~----~~~~~~-----h~~~v~~l~~s~~~~~l~s-----~~~dg~i~iw~~~~ 651 (882)
++++ |..+ ++. ...+.. ....|..+.+-+++++|+- .+....++|+.+.-
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence 4454 4444 322 223332 3567888999999987774 22345567766554
No 475
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.61 E-value=39 Score=36.38 Aligned_cols=40 Identities=10% Similarity=0.239 Sum_probs=20.1
Q ss_pred EEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCC
Q 002782 602 VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD 641 (882)
Q Consensus 602 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 641 (882)
+.+||+.+++....-..+...-...+..-++..++.||..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 4578887765432111111111222344477788888754
No 476
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.49 E-value=17 Score=39.05 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=20.5
Q ss_pred CeeEEEEcCCCcEEEEEcCCCcEEEE
Q 002782 496 DINSLAVAPNDSLVCTGSQDRTACVW 521 (882)
Q Consensus 496 ~i~~~~~s~~~~~la~~s~dg~i~iw 521 (882)
.|..+..++.|..++.++.+|.+..+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 46778899999999999888854443
No 477
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.32 E-value=2.2 Score=28.39 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=28.5
Q ss_pred cCCCEEEEEeC--CeEEEEEcCCCceeeeecCCCccEEEEEE
Q 002782 29 SDGSFIACACG--ESINIVDLSNASIKSTIEGGSDTITALAL 68 (882)
Q Consensus 29 ~dg~~la~~~~--~~I~i~d~~~~~~~~~l~~~~~~I~~l~~ 68 (882)
|||++|+++.. +.|.++|+.+++.+..+.....+ ..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence 68888888774 48999999999988887764333 34444
No 478
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.32 E-value=30 Score=34.82 Aligned_cols=218 Identities=15% Similarity=0.206 Sum_probs=120.1
Q ss_pred eecCCCEEEEEeecCCeEEEEeCC------Cce-EEeeeec-----ccccEEEEEEccCCC-----------cEEEEeeC
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSE------SRC-CVGVGTG-----HMGAVGAVAFSKKLQ-----------NFLVSGSS 462 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~------~~~-~~~~~~~-----~~~~v~~v~~s~~~~-----------~~l~s~~~ 462 (882)
++|.+.. -++....+...+||.. ... ++..+.. .....+.+.|+.... ..++.+++
T Consensus 30 ~~p~~~~-WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tE 108 (336)
T TIGR03118 30 YRPGGPF-WVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTE 108 (336)
T ss_pred ecCCCCE-EEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeC
Confidence 6676654 6666667788889876 121 2222221 223566666664321 23677889
Q ss_pred CCeEEEEecCCCCCCCCCcccccchhhhh-hcCC-CeeEEEEcC--CCcEE-EEEcCCCcEEEEeCCCceeE--EEEecc
Q 002782 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGK-DINSLAVAP--NDSLV-CTGSQDRTACVWRLPDLVSV--VTFRGH 535 (882)
Q Consensus 463 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~-~i~~~~~s~--~~~~l-a~~s~dg~i~iwd~~~~~~~--~~~~~h 535 (882)
||+|.-|.-........ ....... .... --..+++.. .+.+| ++--..++|.+||-.-.... ..+...
T Consensus 109 dGTisaW~p~v~~t~~~-----~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 109 DGTLSGWAPALGTTRMT-----RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred CceEEeecCcCCccccc-----ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 99999998532211000 0001110 0111 123445443 23444 44456788999985432211 001100
Q ss_pred -----cC--c---------eEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEee--cCcCCEEEEEEEe------CCC
Q 002782 536 -----KR--G---------IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE--GHTSSVLRASFLT------RGA 591 (882)
Q Consensus 536 -----~~--~---------v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~s~------~g~ 591 (882)
-. . |+-..-.++.+.=+.+..-|.|-+||+ +|..++++. +.-+..+.++..| .|.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 00 0 111111222222233445578999997 678888774 3445666777754 466
Q ss_pred EEEEeecCCeEEEEEcCCCeeEEEeccCC------CceEEEEEcC
Q 002782 592 QIVSCGADGLVKLWTVRTGECIATYDKHE------DKIWALAVGK 630 (882)
Q Consensus 592 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~s~ 630 (882)
.|+---.||+|..+|..+|+.+..+.... +..|.|.|..
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 77777779999999999999888876433 4579999965
No 479
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.49 E-value=18 Score=31.41 Aligned_cols=113 Identities=8% Similarity=0.039 Sum_probs=69.2
Q ss_pred EEcCCCcEEEEEcCCCcEEEEeCCCce--------eEEEEecccCceEEEEEcC-----CCCEEEEeeCCCcEEEEecCC
Q 002782 501 AVAPNDSLVCTGSQDRTACVWRLPDLV--------SVVTFRGHKRGIWSVEFSP-----VDQVVITASGDKTIKIWSISD 567 (882)
Q Consensus 501 ~~s~~~~~la~~s~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~d~~i~iwd~~~ 567 (882)
.|......|++++.-|.|.|++..... .+..+. -...|++++-.+ ....|+.|+. .++..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 455555678888888999999876432 333333 456778776544 2346676665 7799999987
Q ss_pred CceeeEeecCcCCEEEEEEEe---CCCEEEEeecCCeEEEEEcCCCeeEEEe
Q 002782 568 GSCLKTFEGHTSSVLRASFLT---RGAQIVSCGADGLVKLWTVRTGECIATY 616 (882)
Q Consensus 568 ~~~~~~~~~h~~~v~~~~~s~---~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 616 (882)
..-+..-+ -...|.++.+-. ...-|+..+.+..|.-||..-.+...+.
T Consensus 83 N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 83 NSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred Cchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 76553333 235666666632 2234555555567777776555554443
No 480
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=87.37 E-value=2.5 Score=37.83 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=55.7
Q ss_pred hccchHHHhhhccchHHHHHHHhhcCCch-------hHHHHHHHHHhcchhHHHHHHHHhccCHHHHHHHHHHHHHHhcC
Q 002782 667 LRGQELENAVLDADYTKAIQVAFELRRPH-------KLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTK 739 (882)
Q Consensus 667 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ll~~~~~~~~~ 739 (882)
..++++..++...+..+|++.++.-.-.. ..+..+-.++. .....+++.++..|+.++...|++||-.-+..
T Consensus 38 ~~~~qvr~ll~~g~~~~ALk~aL~npP~~~k~~~K~~~~~~Vl~vL~-s~k~sdI~~~v~~L~~~~~D~LMKYiYkg~~~ 116 (152)
T PF04699_consen 38 PKEQQVRQLLSSGDNEEALKAALENPPYGSKDAVKDRALQLVLEVLT-SIKSSDIENAVKSLDSDQQDILMKYIYKGMES 116 (152)
T ss_dssp GTHHHHHHHHHCT-HHHHHHHHTSS--TT-S-HHHHHHHHHHHHHHH-CS-GGGHHHHHCCS-HHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHhCCCHHHHHHHhccCCCcCCCcchHHHHHHHHHHHHH-HccHHHHHHHHHhCCHHHHhHHHHHHHHhccC
Confidence 34567888999999999999998642111 11122222221 22345799999999999999999999888866
Q ss_pred Ccch---HHHHHHHHHHhccCC
Q 002782 740 PKLC---HVAQFVLFQLFNIHP 758 (882)
Q Consensus 740 ~~~~---~~~~~~~~~~l~~~~ 758 (882)
+... .++..|-..++..-|
T Consensus 117 ~~~~s~~~~LL~WheK~~~~~G 138 (152)
T PF04699_consen 117 PSENSSGGVLLSWHEKLVEVAG 138 (152)
T ss_dssp --TTHH-CHHHHHHHHHHHCCH
T ss_pred ccCccHHHHHHHHHHHHHHHcC
Confidence 5433 345555555444443
No 481
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.00 E-value=5.7 Score=41.51 Aligned_cols=244 Identities=8% Similarity=0.100 Sum_probs=124.8
Q ss_pred eecCCCEEEEEeecCCeEEEEeCCCceEEee-eecccccEEEEEEccCCC-------cEEEEeeCCCeEEEEecCCCCCC
Q 002782 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQ-------NFLVSGSSDHTIKVWSFDGLSDD 477 (882)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~v~~s~~~~-------~~l~s~~~dg~i~~wd~~~~~~~ 477 (882)
..+.|...++.|..||.+.+....-...... .....-...-++..+.++ .+....+.+....+++.......
T Consensus 122 ~~~~gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~ 201 (733)
T COG4590 122 QTPPGQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQI 201 (733)
T ss_pred cCCCCCceEEEeccCCeEEEEeccccccCCCCCccCCCCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhh
Confidence 4466766699999999999886432111100 000000111122222222 13444555555555544322100
Q ss_pred --CCCcccccchhhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEE-Ee-ccc----CceE-EEEEcCCC
Q 002782 478 --AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-FR-GHK----RGIW-SVEFSPVD 548 (882)
Q Consensus 478 --~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~-~~-~h~----~~v~-~l~~s~~~ 548 (882)
............+.....++..+-..|||+.+.+-+. .++.++++.+...... +. ... ..|+ .+..-..|
T Consensus 202 L~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg 280 (733)
T COG4590 202 LRGDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG 280 (733)
T ss_pred hhcccCchhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc
Confidence 0000011122223444567788899999999988765 7788888865432111 11 101 1122 22222346
Q ss_pred CEEEEeeCCCcEEEE-ecCCC-c----eeeEeecCcCCEEEEEEEeCCCEEEEeecCCeEEEEEcCCCeeEEEeccCCCc
Q 002782 549 QVVITASGDKTIKIW-SISDG-S----CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622 (882)
Q Consensus 549 ~~l~s~~~d~~i~iw-d~~~~-~----~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~ 622 (882)
.-|.+++.||-|.-| |+..+ . .++.+.-...++..+.--.+.+-+++-+..|++.++.....+.+- +..--..
T Consensus 281 ~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~ 359 (733)
T COG4590 281 FSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQA 359 (733)
T ss_pred eeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcC
Confidence 678888999998887 44332 1 122222122233222222233456777778888877644333322 2222235
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEECCCH
Q 002782 623 IWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (882)
Q Consensus 623 v~~l~~s~~~~~l~s~~~dg~i~iw~~~~~ 652 (882)
+.-+++||.+.++++-. .|.++++.+++.
T Consensus 360 ~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 360 PQLVAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred cceeeeCcccchheeec-CCceEEEEecCC
Confidence 56688999999988754 456888877653
No 482
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.70 E-value=14 Score=39.60 Aligned_cols=102 Identities=12% Similarity=0.065 Sum_probs=60.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 002782 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF 140 (882)
Q Consensus 61 ~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~ 140 (882)
..|..+..|+.|..+|-+|.+|.+..+=....-.-..++..+..|+|=.|+-+.+ +.+.+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSS------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccC-------------------
Confidence 4677888899999999888888665543222222222332333344444433222 22221
Q ss_pred ecCCCcEEEEEEecCC--CccEEEEEeCCCcEEEEECCCCeEEEEec
Q 002782 141 KGHKGVVSSILFHPDT--DKSLLFSGSDDATVRVWDLLAKKCVATLD 185 (882)
Q Consensus 141 ~~h~~~V~~l~f~~~~--~~~~l~sgs~dg~I~vwd~~~~~~~~~l~ 185 (882)
..-.+..++|+|+. + ..|..-+.|..||+||+...+.+....
T Consensus 164 --~~ltl~Qa~WHP~S~~D-~hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 164 --TSLTLKQAAWHPSSILD-PHLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred --CceeeeeccccCCccCC-ceEEEEecCcEEEEEecCCcchhhccC
Confidence 11235567799875 3 336777889999999998777664443
No 483
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.47 E-value=17 Score=38.87 Aligned_cols=144 Identities=14% Similarity=0.144 Sum_probs=90.4
Q ss_pred eEEccCCCEEEEEeCC--eEEEEEcCCCceeeeecCCCccEEEEEEcCCC--------CEEEEEeCCCcEEEEECC-CCe
Q 002782 25 LVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDD--------KLLFSSGHSREIRVWDLS-TLK 93 (882)
Q Consensus 25 va~s~dg~~la~~~~~--~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~--------~~las~~~dg~i~iwd~~-~~~ 93 (882)
+....|..+|+..++. .+.-.|++-|+.+-.+.-|... -+.|.|+. +.|+ |-++..|.--|.. .|.
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gN 549 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGN 549 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCC
Confidence 4445677777766654 6888899999999999887665 57788864 3343 3334444444442 332
Q ss_pred eEEE--eec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEecCCCccEEEEEeCCCc
Q 002782 94 CLRS--WKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (882)
Q Consensus 94 ~~~~--~~~--h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f~~~~~~~~l~sgs~dg~ 169 (882)
.+.. .+. ......+..-. .+.|+|.||..|.|++||--.-+....+.+....|..+..+.+|+. +|+|| ...
T Consensus 550 Ki~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~-ilaTC--k~y 625 (776)
T COG5167 550 KIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKH-ILATC--KNY 625 (776)
T ss_pred ceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcE-EEEee--cce
Confidence 2222 111 11122222222 4458999999999999998766666667778888999999988774 33333 344
Q ss_pred EEEEEC
Q 002782 170 VRVWDL 175 (882)
Q Consensus 170 I~vwd~ 175 (882)
+.+-|+
T Consensus 626 llL~d~ 631 (776)
T COG5167 626 LLLTDV 631 (776)
T ss_pred EEEEec
Confidence 666665
No 484
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=86.33 E-value=6.5 Score=34.29 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=62.5
Q ss_pred ccchHHHhhhccchHHHHHHHhhcCCch--------hHHHHHHHHHhcchhHHHHHHHHhccCHHHHHHHHHHHHHHhcC
Q 002782 668 RGQELENAVLDADYTKAIQVAFELRRPH--------KLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTK 739 (882)
Q Consensus 668 ~~~~~~~~~~~~~~~~a~~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ll~~~~~~~~~ 739 (882)
.+++++.++...+..+|+..|+.-.-+. +.+.++..++. ......|+.++..|+.++...|.+||-+-+.+
T Consensus 38 ~~~ev~sll~qg~~~~AL~~aL~~~P~~t~~q~vK~~a~~~v~~vL~-~ik~adI~~~v~~Ls~e~~DiLmKYiYkGm~~ 116 (152)
T KOG3380|consen 38 DEREVRSLLTQGKSLEALQTALLNPPYGTKDQEVKDRALNVVLKVLT-SIKQADIEAAVKKLSTEEIDILMKYIYKGMEI 116 (152)
T ss_pred ChHHHHHHHHcccHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 4568889999999999999998644322 12222222211 22345899999999999999999999888876
Q ss_pred Cc---chHHHHHHHHHHhccCCcc
Q 002782 740 PK---LCHVAQFVLFQLFNIHPPT 760 (882)
Q Consensus 740 ~~---~~~~~~~~~~~~l~~~~~~ 760 (882)
+. .|..+..|...++...|..
T Consensus 117 p~d~~s~~~LL~WHEk~~~~~GvG 140 (152)
T KOG3380|consen 117 PSDNSSCVSLLQWHEKLVAKSGVG 140 (152)
T ss_pred ccccchHHHHHHHHHHHHHhcCCc
Confidence 53 4444555666666555543
No 485
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=86.27 E-value=49 Score=35.08 Aligned_cols=42 Identities=10% Similarity=0.241 Sum_probs=21.6
Q ss_pred eEEEEEcCCCeeEEEeccCCCceEEEEEcCCCCEEEEEeCCC
Q 002782 601 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA 642 (882)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 642 (882)
.+.+||..+.+....-......-...+..-++++++.||.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 467888776543222111111222233445788888887653
No 486
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.47 E-value=5.2 Score=26.55 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=28.8
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCeeEEEeecCCCCEEEEEE
Q 002782 70 PDDKLLFSSG-HSREIRVWDLSTLKCLRSWKGHDGPAIGMAC 110 (882)
Q Consensus 70 pd~~~las~~-~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~f 110 (882)
|++++|.++. .++.|.++|..+++.+..+.....| ..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence 6788777665 4789999999999988888763332 34444
No 487
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=84.26 E-value=99 Score=36.82 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=50.5
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEe---ecCCCcEEEEEEecCC----CccEEEEEeCCCcEEEEECCCCeEEEEe--cC
Q 002782 116 LLATAGADRKVLVWDVDGGFCTHYF---KGHKGVVSSILFHPDT----DKSLLFSGSDDATVRVWDLLAKKCVATL--DK 186 (882)
Q Consensus 116 ~lasg~~dg~v~vwd~~~~~~~~~~---~~h~~~V~~l~f~~~~----~~~~l~sgs~dg~I~vwd~~~~~~~~~l--~~ 186 (882)
.++.+-..|.+.-+....+..+..+ ..-+..|.|+++.++. ...+++.++.|+.+++..+....++..+ ++
T Consensus 551 qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~ 630 (1205)
T KOG1898|consen 551 QIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQG 630 (1205)
T ss_pred EEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccc
Confidence 3444445555555544322222222 2345678999998875 2356999999999999999877777665 33
Q ss_pred cccceEEEEE
Q 002782 187 HFSRVTSMAI 196 (882)
Q Consensus 187 h~~~v~~l~~ 196 (882)
-..++.++++
T Consensus 631 l~~~~~s~~i 640 (1205)
T KOG1898|consen 631 LSSPPESLCI 640 (1205)
T ss_pred cCCCccceEE
Confidence 3445555555
No 488
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=84.16 E-value=50 Score=33.35 Aligned_cols=201 Identities=15% Similarity=0.168 Sum_probs=113.0
Q ss_pred ceEEccCCCEEEEEeC-CeEEEEEcC------CC-ceeeeecC-----CCccEEEEEEcCCCCE------------EEEE
Q 002782 24 PLVVSSDGSFIACACG-ESINIVDLS------NA-SIKSTIEG-----GSDTITALALSPDDKL------------LFSS 78 (882)
Q Consensus 24 ~va~s~dg~~la~~~~-~~I~i~d~~------~~-~~~~~l~~-----~~~~I~~l~~spd~~~------------las~ 78 (882)
-|+++|.+.+-++..+ +...+||.. .. .++-.+.. .....|.+.|+....+ ++.+
T Consensus 27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence 5999998865554444 378999986 11 23344432 1235677777754333 4566
Q ss_pred eCCCcEEEEECCCCee-----EEEee-cCCCCE-EEEEEcC--CCCEEEEEe-CCCcEEEEECCCCeEEE--EeecC---
Q 002782 79 GHSREIRVWDLSTLKC-----LRSWK-GHDGPA-IGMACHP--SGGLLATAG-ADRKVLVWDVDGGFCTH--YFKGH--- 143 (882)
Q Consensus 79 ~~dg~i~iwd~~~~~~-----~~~~~-~h~~~V-~~l~fs~--~~~~lasg~-~dg~v~vwd~~~~~~~~--~~~~h--- 143 (882)
++||+|.=|...-+.. ...+. ...+.| ..+++-. .+.+|..+. ..++|.|+|-.=..... .+...
T Consensus 107 tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iP 186 (336)
T TIGR03118 107 TEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALP 186 (336)
T ss_pred eCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCC
Confidence 8899999998532221 11222 112333 3344443 356666554 56889999854322110 01100
Q ss_pred --CCc--EE------EEEE---ecCCCccEEEEEeCCCcEEEEECCCCeEEEEe--cCcccceEEEEEcc------CCCE
Q 002782 144 --KGV--VS------SILF---HPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITS------DGST 202 (882)
Q Consensus 144 --~~~--V~------~l~f---~~~~~~~~l~sgs~dg~I~vwd~~~~~~~~~l--~~h~~~v~~l~~s~------~~~~ 202 (882)
-.+ |. -+.| .++.. -=+.|..-|.|-++|+ .+..++.+ .+.-+..+.|+..| .|.+
T Consensus 187 agyAPFnIqnig~~lyVtYA~qd~~~~--d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 187 AGYAPFNVQNLGGTLYVTYAQQDADRN--DEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCcceEEECCeEEEEEEecCCccc--ccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 000 10 1111 11111 1334445578999996 56666665 34456778888865 5677
Q ss_pred EEEEeCCCeEEEEecCCceeeeeec
Q 002782 203 LISAGRDKVVNLWDLRDYSCKLTVP 227 (882)
Q Consensus 203 l~s~~~dg~i~vwd~~~~~~~~~~~ 227 (882)
|+---.||+|..+|..+++.+-.+.
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeec
Confidence 7777789999999998877655543
No 489
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.16 E-value=14 Score=44.57 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred EEeecCCeEEEEeCCCceEEeeeecccccEEEEEEccCCCc-------EEEEeeCCCeEEEEecCCCCCCCCCcccccch
Q 002782 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN-------FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 487 (882)
Q Consensus 415 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~s~~~~~-------~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 487 (882)
+-.+.|..+.+|+++++.....+.+-...|..+..-.-..+ +++..+.--.|.++-+.-.........-...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~- 171 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS- 171 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc-
Q ss_pred hhhhhcCCCeeEEEEcCCCcEEEEEcCCCcEEEEeC---------------------------CCceeEEEEe-cccCce
Q 002782 488 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL---------------------------PDLVSVVTFR-GHKRGI 539 (882)
Q Consensus 488 ~~~~~~~~~i~~~~~s~~~~~la~~s~dg~i~iwd~---------------------------~~~~~~~~~~-~h~~~v 539 (882)
......+..|+|+....+|+.+.+|-.| .+|.+ ++ +..+. .+..+|
T Consensus 172 ~~i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs---~~~~~~~~~dpI 245 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS---LLSVPGSSKDPI 245 (1311)
T ss_pred eeeecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhh---hhcCCCCCCCcc
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEecCC
Q 002782 540 WSVEFSPVDQVVITASGDKTIKIWSISD 567 (882)
Q Consensus 540 ~~l~~s~~~~~l~s~~~d~~i~iwd~~~ 567 (882)
..+.....-+.+.+-+.-|+|.+|++..
T Consensus 246 ~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 246 RQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeEeccccceeeeeccCceEEEEEccC
No 490
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=83.99 E-value=91 Score=37.12 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=51.2
Q ss_pred CCCeeEEEEcCCCcEEEEEcCCCcEEEEeCCCceeEEEE----ec---------------ccCceEEEEEcCCCCEEEEe
Q 002782 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF----RG---------------HKRGIWSVEFSPVDQVVITA 554 (882)
Q Consensus 494 ~~~i~~~~~s~~~~~la~~s~dg~i~iwd~~~~~~~~~~----~~---------------h~~~v~~l~~s~~~~~l~s~ 554 (882)
.+.|.+++...-+.+++....||+|.++|-.+.+.+... .. +-.++..++|||.+..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 456788888888889999999999999998877555443 10 11234457899999888888
Q ss_pred eCCCcEE
Q 002782 555 SGDKTIK 561 (882)
Q Consensus 555 ~~d~~i~ 561 (882)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888765
No 491
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=83.98 E-value=85 Score=35.84 Aligned_cols=203 Identities=13% Similarity=0.131 Sum_probs=109.1
Q ss_pred ceEEccCCCEEEEEeCC-eEEEEEc-CCCceeeeecC-CCccEEEEEEcCC---CCEEEEE-eCCCcEEEEECCCC----
Q 002782 24 PLVVSSDGSFIACACGE-SINIVDL-SNASIKSTIEG-GSDTITALALSPD---DKLLFSS-GHSREIRVWDLSTL---- 92 (882)
Q Consensus 24 ~va~s~dg~~la~~~~~-~I~i~d~-~~~~~~~~l~~-~~~~I~~l~~spd---~~~las~-~~dg~i~iwd~~~~---- 92 (882)
+..++|+...+-.|-.+ .|.-|=+ .|.+.+....- .+..|+|+..-.. .++.++| .....-++--+..+
T Consensus 32 s~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~ 111 (670)
T PF10395_consen 32 SDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGST 111 (670)
T ss_pred ecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccc
Confidence 44667888888887766 4444433 25666655543 3556788877543 2344444 33333333332222
Q ss_pred -------e--eEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--Eee-cCCCcEEEEEEecCCC---
Q 002782 93 -------K--CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH--YFK-GHKGVVSSILFHPDTD--- 157 (882)
Q Consensus 93 -------~--~~~~~~~h~~~V~~l~fs~~~~~lasg~~dg~v~vwd~~~~~~~~--~~~-~h~~~V~~l~f~~~~~--- 157 (882)
+ ....++ -+..|..+.|.++++.+++...+|.|.+||...+.... .+. .+...+.--+|.++..
T Consensus 112 ~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~ 190 (670)
T PF10395_consen 112 EDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELEN 190 (670)
T ss_pred cccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhccccccc
Confidence 1 112222 36789999999999999999999999999993332111 222 2333222224444322
Q ss_pred -ccEEEEEeC-C---CcEEEEEC-CCCeEEEEec---CcccceEEEEEcc-CCCEEEEEeCCCeEEEEecCCceeeeeec
Q 002782 158 -KSLLFSGSD-D---ATVRVWDL-LAKKCVATLD---KHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (882)
Q Consensus 158 -~~~l~sgs~-d---g~I~vwd~-~~~~~~~~l~---~h~~~v~~l~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 227 (882)
..++++.+. + -..+++.+ .+...+..+. .+........|.- +|. |+.- .++.|.+|++...+...++.
T Consensus 191 ~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~~tI~ 268 (670)
T PF10395_consen 191 GKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQKTIS 268 (670)
T ss_pred CCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEEEEEE
Confidence 223333333 2 24667777 1222222222 2222223333332 443 3333 67899999998888777766
Q ss_pred Cc
Q 002782 228 TY 229 (882)
Q Consensus 228 ~~ 229 (882)
..
T Consensus 269 l~ 270 (670)
T PF10395_consen 269 LP 270 (670)
T ss_pred ec
Confidence 55
No 492
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=83.40 E-value=59 Score=33.62 Aligned_cols=61 Identities=16% Similarity=0.407 Sum_probs=45.8
Q ss_pred ccCCCEEEEEeCCeEEEEEcCC--CceeeeecCCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 002782 28 SSDGSFIACACGESINIVDLSN--ASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLS 90 (882)
Q Consensus 28 s~dg~~la~~~~~~I~i~d~~~--~~~~~~l~~~~~~I~~l~~spd~~~las~~-~dg~i~iwd~~ 90 (882)
.-++++|+.|+++.+.+.+... ++..+.+ +...|+++.+.+.-+.|++-+ ....++++++.
T Consensus 10 ~~~~~~lL~GTe~Gly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 10 TCDGKWLLVGTEEGLYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred ccCCcEEEEEeCCceEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 3455799999999999999765 3444444 456899999999888777654 44559999984
No 493
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.30 E-value=58 Score=36.28 Aligned_cols=142 Identities=21% Similarity=0.230 Sum_probs=73.6
Q ss_pred eEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCC---EEEEEEcCCCCEE
Q 002782 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP---AIGMACHPSGGLL 117 (882)
Q Consensus 41 ~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~---V~~l~fs~~~~~l 117 (882)
...++|. +|.++..+.........+..-++|.+++..+ ..+..+|+- |+.+......... =..+...|+|++|
T Consensus 129 ~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L 204 (477)
T PF05935_consen 129 YTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLL 204 (477)
T ss_dssp EEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EE
T ss_pred eEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEE
Confidence 5777774 5666655543222222267789999887665 788888884 6665554432211 1356788999998
Q ss_pred EEEeC-------------CCcEEEEECCCCeEEEEee--cCC-------------------------CcEEEEEEecCCC
Q 002782 118 ATAGA-------------DRKVLVWDVDGGFCTHYFK--GHK-------------------------GVVSSILFHPDTD 157 (882)
Q Consensus 118 asg~~-------------dg~v~vwd~~~~~~~~~~~--~h~-------------------------~~V~~l~f~~~~~ 157 (882)
+.+.. .-.|..+| .+|+.+..+. .|- -.+.++.+.+..+
T Consensus 205 ~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd 283 (477)
T PF05935_consen 205 ILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDD 283 (477)
T ss_dssp EEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTT
T ss_pred EEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCC
Confidence 87761 12356666 6776665543 111 1367888887534
Q ss_pred ccEEEEEeCCCcEEEEECCCCeEEEEecCcc
Q 002782 158 KSLLFSGSDDATVRVWDLLAKKCVATLDKHF 188 (882)
Q Consensus 158 ~~~l~sgs~dg~I~vwd~~~~~~~~~l~~h~ 188 (882)
.+++++-.-..|...|..+++....+..|.
T Consensus 284 -~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 284 -SIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp -EEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred -eEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 345555555578888877777776665543
No 494
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.17 E-value=31 Score=38.37 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=66.2
Q ss_pred eEEccCCCEEEEEeCCeEEEEEcCCCceeeeecCCCcc---EEEEEEcCCCCEEEEEeC-------------CCcEEEEE
Q 002782 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDT---ITALALSPDDKLLFSSGH-------------SREIRVWD 88 (882)
Q Consensus 25 va~s~dg~~la~~~~~~I~i~d~~~~~~~~~l~~~~~~---I~~l~~spd~~~las~~~-------------dg~i~iwd 88 (882)
+..-++|.+++.. ...+..+|.. |+.+....-.... =..+..-|+|++|+.+.. .-.|..+|
T Consensus 153 ~~~l~nG~ll~~~-~~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGS-GNRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEE-BTEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEec-CCceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 5677889877644 4788888874 5554433322111 245678899999987771 22467777
Q ss_pred CCCCeeEEEeec--CC-------------------------CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 002782 89 LSTLKCLRSWKG--HD-------------------------GPAIGMACHP-SGGLLATAGADRKVLVWDVDGGFCTHYF 140 (882)
Q Consensus 89 ~~~~~~~~~~~~--h~-------------------------~~V~~l~fs~-~~~~lasg~~dg~v~vwd~~~~~~~~~~ 140 (882)
.+|+.+..+.. |- ..+.++.+.+ ++.+++|+-.-..|...|..+++....+
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 88887777532 10 2478899999 5556666555568888898888887777
Q ss_pred ecCCC
Q 002782 141 KGHKG 145 (882)
Q Consensus 141 ~~h~~ 145 (882)
-.|.+
T Consensus 310 g~~~~ 314 (477)
T PF05935_consen 310 GPPGG 314 (477)
T ss_dssp S-STT
T ss_pred CCCCC
Confidence 65553
No 495
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=83.14 E-value=1.1e+02 Score=36.46 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=51.2
Q ss_pred cCceEEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeEe----e---------------cCcCCEEEEEEEeCCCEEEEe
Q 002782 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF----E---------------GHTSSVLRASFLTRGAQIVSC 596 (882)
Q Consensus 536 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~---------------~h~~~v~~~~~s~~g~~l~s~ 596 (882)
...|.+++...-+.+++.+..||+|.++|-.+.+.+... . .+...+..++|||.+.-++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 356788888888889999999999999998776554333 1 011234558899999999999
Q ss_pred ecCCeEE
Q 002782 597 GADGLVK 603 (882)
Q Consensus 597 ~~dg~i~ 603 (882)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888766
No 496
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.45 E-value=20 Score=43.61 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.8
Q ss_pred ccCCCEEEEEeCCCeEEEEecCCcee
Q 002782 197 TSDGSTLISAGRDKVVNLWDLRDYSC 222 (882)
Q Consensus 197 s~~~~~l~s~~~dg~i~vwd~~~~~~ 222 (882)
++++..++++..||.+.+||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 78899999999999999999998765
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.40 E-value=33 Score=33.81 Aligned_cols=187 Identities=20% Similarity=0.198 Sum_probs=0.0
Q ss_pred EEEEEeCCeEEEEEcCCCceeeeecCCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCCEEEEEEcC
Q 002782 33 FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112 (882)
Q Consensus 33 ~la~~~~~~I~i~d~~~~~~~~~l~~~~~~I~~l~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~fs~ 112 (882)
+.+....+.|.++| .|.--...+.-.... +...+....+...+ --.=.+||+.+++....--....-..+-+|-+
T Consensus 2 h~~~~~~~~v~~~d-~t~~g~s~~~~~~~~---c~~~~~~~~~~~d~-~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~ 76 (243)
T PF07250_consen 2 HMALLHNNKVIMFD-RTNFGPSNISLPDGR---CRDNPEDNALKFDG-PAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLP 76 (243)
T ss_pred eEeEccCCEEEEEe-CCCcccccccCCCCc---cccCccccccccCc-eEEEEEEecCCCcEEeccCCCCCcccCcCCCC
Q ss_pred CCCEEEEEe---CCCcEEEEECCCCeEEEEeecCCCcEEEEEE------ecCCCccEEEEEeCCCcEEEEEC-CCCeEEE
Q 002782 113 SGGLLATAG---ADRKVLVWDVDGGFCTHYFKGHKGVVSSILF------HPDTDKSLLFSGSDDATVRVWDL-LAKKCVA 182 (882)
Q Consensus 113 ~~~~lasg~---~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~f------~~~~~~~~l~sgs~dg~I~vwd~-~~~~~~~ 182 (882)
||++|.+|+ ....+++++..+................=.| .|||+ .+++.|....+.-+|.- .......
T Consensus 77 dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~-vlIvGG~~~~t~E~~P~~~~~~~~~ 155 (243)
T PF07250_consen 77 DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGR-VLIVGGSNNPTYEFWPPKGPGPGPV 155 (243)
T ss_pred CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCC-EEEEeCcCCCcccccCCccCCCCce
Q ss_pred Ee--------cCcccceEEEEEccCCCEEEEEeCCCeEEEEecCCceeeeeec
Q 002782 183 TL--------DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (882)
Q Consensus 183 ~l--------~~h~~~v~~l~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 227 (882)
.+ .....----+...|+|+.++.+..+. .+||..+.+.++.+|
T Consensus 156 ~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 156 TLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLP 206 (243)
T ss_pred eeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCC
No 498
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=82.08 E-value=95 Score=35.03 Aligned_cols=217 Identities=16% Similarity=0.204 Sum_probs=99.8
Q ss_pred ccCCceEEccCCCEEEEEe-CCeEEEEEcCCC--------cee-eeecCCCccEEEEEEcC-----CCCEEEEEe--CC-
Q 002782 20 YGGGPLVVSSDGSFIACAC-GESINIVDLSNA--------SIK-STIEGGSDTITALALSP-----DDKLLFSSG--HS- 81 (882)
Q Consensus 20 y~g~~va~s~dg~~la~~~-~~~I~i~d~~~~--------~~~-~~l~~~~~~I~~l~~sp-----d~~~las~~--~d- 81 (882)
..|..+++.|.|+.++.+. .+.+.|+-++.. ... ..+ .....|..++|-. +...+|.-. ..
T Consensus 44 ~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~ 122 (504)
T PF10433_consen 44 QPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLAILYVDSQR 122 (504)
T ss_dssp TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred cCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccc-cCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence 4455799999999988877 458888888760 111 111 1245678888875 334555432 22
Q ss_pred -CcEEEEECCCCeeEEE----------e-ecCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEE-CCC--C-eEEEEeec--
Q 002782 82 -REIRVWDLSTLKCLRS----------W-KGHDGPAIGMACH-PSGGLLATAGADRKVLVWD-VDG--G-FCTHYFKG-- 142 (882)
Q Consensus 82 -g~i~iwd~~~~~~~~~----------~-~~h~~~V~~l~fs-~~~~~lasg~~dg~v~vwd-~~~--~-~~~~~~~~-- 142 (882)
..+..+++.....+.. + ..+..+..-+..- |.|-.|+++ ++ +.++. ... + .....+..
T Consensus 123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~--~~-~i~y~~~~~~~~~~~~~~~~~~~ 199 (504)
T PF10433_consen 123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGG--EN-IIIYKNHLIGSGDYSFLSIPSPP 199 (504)
T ss_dssp EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEE--SS-EEEEEE------TTEEEEE--H-
T ss_pred cceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEEC--CE-EEEEecccccccccccccccCCc
Confidence 2344444332221111 1 1122332223322 234444443 23 33343 211 1 11222221
Q ss_pred --CCCcEEEEEE-----ecCCCccEEEEEeCCCcEEEEECCCCeE--EEEecCc-ccceEEEEEccCC-CEEEEEeC--C
Q 002782 143 --HKGVVSSILF-----HPDTDKSLLFSGSDDATVRVWDLLAKKC--VATLDKH-FSRVTSMAITSDG-STLISAGR--D 209 (882)
Q Consensus 143 --h~~~V~~l~f-----~~~~~~~~l~sgs~dg~I~vwd~~~~~~--~~~l~~h-~~~v~~l~~s~~~-~~l~s~~~--d 209 (882)
...-+.+.++ ....+...++.+..+|.+....+..... ....-+. .....++++..+| .+|+.|+. |
T Consensus 200 ~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gd 279 (504)
T PF10433_consen 200 SSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGD 279 (504)
T ss_dssp HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-
T ss_pred cCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCC
Confidence 1233343332 1233445588889999998887755331 1111122 4455677776665 46666664 5
Q ss_pred CeEEEEecCCceeeeeecCcceeeEEEecCC
Q 002782 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 240 (882)
Q Consensus 210 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 240 (882)
+.+..|.....+.+..++.-.++..++..+.
T Consensus 280 s~l~~~~~~~l~~~~~~~N~~Pi~D~~v~~~ 310 (504)
T PF10433_consen 280 SQLLQISLSNLEVLDSLPNWGPIVDFCVVDS 310 (504)
T ss_dssp EEEEEEESESEEEEEEE----SEEEEEEE-T
T ss_pred cEEEEEeCCCcEEEEeccCcCCccceEEecc
Confidence 6677777677778888888888888887654
No 499
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.88 E-value=71 Score=33.45 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=52.7
Q ss_pred CCCEEEEEeC------CeEEEEEcCCCce---eeeec---CCCccEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC
Q 002782 30 DGSFIACACG------ESINIVDLSNASI---KSTIE---GGSDTITALALSPDDKLLFSSGH-----SREIRVWDLSTL 92 (882)
Q Consensus 30 dg~~la~~~~------~~I~i~d~~~~~~---~~~l~---~~~~~I~~l~~spd~~~las~~~-----dg~i~iwd~~~~ 92 (882)
++++++.|+. ..+..+|+.+.+- ...+. .......+ +. -++++.+.|+. ...+..||..+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~-~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSA-CY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceE-EE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 4555555542 2577788776653 12221 11111122 22 24666666664 246888888765
Q ss_pred eeEE--EeecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCeE
Q 002782 93 KCLR--SWKGHDGPAIGMACHPSGGLLATAGADR----KVLVWDVDGGFC 136 (882)
Q Consensus 93 ~~~~--~~~~h~~~V~~l~fs~~~~~lasg~~dg----~v~vwd~~~~~~ 136 (882)
+-.. .+.. .......+...+++..+.|+.++ .+.+||+.+.+-
T Consensus 150 ~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 4322 2221 11222233344677777777653 356888887654
No 500
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.70 E-value=14 Score=42.23 Aligned_cols=71 Identities=23% Similarity=0.253 Sum_probs=45.4
Q ss_pred CCCcEEEEEcCCCcEEEEeCCC----ceeEEEE-ec-c--------------------cCceEEEEEcC----CCCEEEE
Q 002782 504 PNDSLVCTGSQDRTACVWRLPD----LVSVVTF-RG-H--------------------KRGIWSVEFSP----VDQVVIT 553 (882)
Q Consensus 504 ~~~~~la~~s~dg~i~iwd~~~----~~~~~~~-~~-h--------------------~~~v~~l~~s~----~~~~l~s 553 (882)
++...++++..||.+....... +...... .. + ...+.++++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667888888899888877654 2222111 11 1 12355666666 7789999
Q ss_pred eeCCCcEEEEecCCCceeeEe
Q 002782 554 ASGDKTIKIWSISDGSCLKTF 574 (882)
Q Consensus 554 ~~~d~~i~iwd~~~~~~~~~~ 574 (882)
.+.|+++|+||+.++.++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999997665
Done!