Query 002783
Match_columns 881
No_of_seqs 390 out of 1958
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1932 TATA binding protein a 100.0 2E-147 5E-152 1263.8 62.0 824 1-877 3-873 (1180)
2 KOG1046 Puromycin-sensitive am 100.0 1.4E-78 2.9E-83 737.8 45.8 651 13-792 29-703 (882)
3 PRK14015 pepN aminopeptidase N 100.0 4.5E-73 9.8E-78 682.8 61.9 563 15-701 15-609 (875)
4 TIGR02412 pepN_strep_liv amino 100.0 2.1E-73 4.5E-78 694.0 52.9 563 17-716 12-596 (831)
5 TIGR02414 pepN_proteo aminopep 100.0 9.7E-72 2.1E-76 669.1 60.3 541 16-682 4-566 (863)
6 TIGR02411 leuko_A4_hydro leuko 100.0 6.1E-66 1.3E-70 604.3 42.5 433 17-518 9-452 (601)
7 COG0308 PepN Aminopeptidase N 100.0 1.2E-63 2.5E-68 607.7 50.4 463 24-574 25-509 (859)
8 PF01433 Peptidase_M1: Peptida 100.0 4.8E-58 1E-62 521.4 28.2 372 15-442 2-390 (390)
9 KOG1047 Bifunctional leukotrie 100.0 3.2E-50 7E-55 435.0 29.4 440 1-516 1-459 (613)
10 PF13485 Peptidase_MA_2: Pepti 98.9 1.8E-09 3.9E-14 101.9 5.1 102 346-465 26-128 (128)
11 COG3975 Predicted protease wit 98.5 3.5E-06 7.5E-11 93.7 17.8 225 277-516 182-434 (558)
12 PF11838 ERAP1_C: ERAP1-like C 96.7 0.028 6E-07 62.2 14.4 164 638-814 1-180 (324)
13 PRK09687 putative lyase; Provi 96.4 0.091 2E-06 56.8 15.9 118 663-816 98-219 (280)
14 PRK09687 putative lyase; Provi 95.5 0.17 3.7E-06 54.6 12.7 111 665-815 137-247 (280)
15 PF13646 HEAT_2: HEAT repeats; 94.6 0.15 3.3E-06 44.2 7.7 71 659-737 3-73 (88)
16 PF10460 Peptidase_M30: Peptid 94.5 0.21 4.5E-06 55.2 10.1 138 346-509 140-285 (366)
17 PF07607 DUF1570: Protein of u 94.4 0.028 6.1E-07 52.6 2.7 38 348-385 4-43 (128)
18 PF04450 BSP: Peptidase of pla 94.2 0.89 1.9E-05 46.5 13.1 110 343-504 94-204 (205)
19 PF05299 Peptidase_M61: M61 gl 93.6 0.028 6.1E-07 52.1 1.1 43 346-388 5-58 (122)
20 PRK13800 putative oxidoreducta 91.9 0.98 2.1E-05 57.2 11.7 124 660-820 746-869 (897)
21 PF13646 HEAT_2: HEAT repeats; 90.2 2.2 4.8E-05 36.7 9.0 87 692-814 2-88 (88)
22 TIGR02270 conserved hypothetic 86.5 11 0.00025 42.9 13.9 167 640-862 40-206 (410)
23 KOG0946 ER-Golgi vesicle-tethe 85.8 2.5 5.5E-05 50.2 8.1 143 644-817 109-267 (970)
24 PRK13800 putative oxidoreducta 85.3 8.1 0.00017 49.1 13.2 118 659-817 718-835 (897)
25 COG1413 FOG: HEAT repeat [Ener 85.2 25 0.00054 38.9 15.8 128 658-817 46-177 (335)
26 PF03130 HEAT_PBS: PBS lyase H 75.7 3.6 7.8E-05 27.2 3.0 26 707-736 1-26 (27)
27 smart00567 EZ_HEAT E-Z type HE 75.0 3 6.4E-05 28.1 2.5 27 705-735 1-27 (30)
28 PF10026 DUF2268: Predicted Zn 74.7 11 0.00024 38.3 7.7 41 345-385 65-109 (195)
29 PF02985 HEAT: HEAT repeat; I 73.7 5.3 0.00011 27.2 3.5 25 693-719 4-28 (31)
30 PF10023 DUF2265: Predicted am 69.0 6.3 0.00014 43.1 4.6 38 345-388 165-202 (337)
31 KOG0567 HEAT repeat-containing 68.5 9 0.00019 40.2 5.3 53 669-723 200-252 (289)
32 PF11940 DUF3458: Domain of un 66.2 82 0.0018 35.4 12.8 44 639-682 69-112 (367)
33 COG4324 Predicted aminopeptida 64.8 7.2 0.00016 40.4 3.7 36 346-387 198-233 (376)
34 PF01602 Adaptin_N: Adaptin N 64.4 40 0.00087 39.7 10.8 126 667-817 90-220 (526)
35 COG1413 FOG: HEAT repeat [Ener 63.8 74 0.0016 35.1 12.1 56 664-723 82-138 (335)
36 PF03272 Enhancin: Viral enhan 60.7 1.5E+02 0.0032 37.0 14.6 114 265-385 144-276 (775)
37 PF13513 HEAT_EZ: HEAT-like re 58.0 29 0.00062 26.9 5.4 27 690-718 29-55 (55)
38 smart00731 SprT SprT homologue 55.0 20 0.00043 34.6 4.9 65 287-359 5-73 (146)
39 PF12315 DUF3633: Protein of u 53.0 28 0.0006 35.4 5.5 41 346-388 94-134 (212)
40 PF01863 DUF45: Protein of unk 50.5 31 0.00067 35.1 5.7 67 280-360 109-179 (205)
41 PF13699 DUF4157: Domain of un 48.6 20 0.00044 30.6 3.3 67 288-357 6-73 (79)
42 PRK04860 hypothetical protein; 48.1 43 0.00094 32.8 5.9 68 282-358 6-76 (160)
43 TIGR02270 conserved hypothetic 48.0 4.8E+02 0.01 29.9 15.5 117 659-818 151-267 (410)
44 PF06685 DUF1186: Protein of u 42.3 83 0.0018 33.3 7.4 77 758-846 127-203 (249)
45 KOG4535 HEAT and armadillo rep 42.2 12 0.00027 42.2 1.2 73 690-770 574-650 (728)
46 KOG2259 Uncharacterized conser 40.7 2E+02 0.0044 34.4 10.5 163 690-873 374-565 (823)
47 KOG0567 HEAT repeat-containing 38.5 82 0.0018 33.3 6.4 71 659-735 39-109 (289)
48 KOG4224 Armadillo repeat prote 38.2 48 0.001 36.5 4.8 119 690-814 252-427 (550)
49 KOG1932 TATA binding protein a 38.0 14 0.00031 46.0 1.0 100 433-538 444-554 (1180)
50 PTZ00429 beta-adaptin; Provisi 34.0 9.2E+02 0.02 30.0 15.6 60 659-720 105-169 (746)
51 PF04826 Arm_2: Armadillo-like 33.0 3.2E+02 0.0069 29.1 10.1 128 658-795 15-167 (254)
52 PF06114 DUF955: Domain of unk 32.6 41 0.00089 30.3 3.1 18 345-362 42-59 (122)
53 KOG2171 Karyopherin (importin) 32.3 2.9E+02 0.0062 35.3 10.7 162 656-838 348-526 (1075)
54 KOG1824 TATA-binding protein-i 31.5 3.5E+02 0.0076 33.9 10.9 64 700-793 341-404 (1233)
55 PF01602 Adaptin_N: Adaptin N 31.1 4.9E+02 0.011 30.5 12.7 168 661-861 119-294 (526)
56 PF01435 Peptidase_M48: Peptid 27.9 78 0.0017 32.5 4.5 20 345-364 89-108 (226)
57 PF01447 Peptidase_M4: Thermol 27.1 2.5E+02 0.0053 27.3 7.4 28 275-303 66-93 (150)
58 PF10263 SprT-like: SprT-like 25.5 1.4E+02 0.0031 28.7 5.6 18 344-361 59-76 (157)
59 PHA02456 zinc metallopeptidase 25.5 45 0.00097 30.0 1.7 12 346-357 80-91 (141)
60 PHA01816 hypothetical protein 24.0 1.1E+02 0.0023 27.8 3.8 32 765-800 68-99 (160)
61 PF12755 Vac14_Fab1_bd: Vacuol 22.8 2.6E+02 0.0056 24.9 6.2 69 690-791 28-96 (97)
62 PF13574 Reprolysin_2: Metallo 22.8 47 0.001 33.0 1.6 12 346-357 112-123 (173)
63 PF12725 DUF3810: Protein of u 22.6 44 0.00095 36.8 1.4 41 347-400 198-238 (318)
64 PRK04351 hypothetical protein; 22.4 95 0.0021 30.1 3.5 12 345-356 61-72 (149)
65 KOG2259 Uncharacterized conser 22.3 5.1E+02 0.011 31.2 9.7 49 763-811 501-549 (823)
66 PF11865 DUF3385: Domain of un 21.9 5.9E+02 0.013 24.9 9.1 32 690-722 11-42 (160)
67 PRK03982 heat shock protein Ht 20.5 1.6E+02 0.0036 31.8 5.4 16 345-360 125-140 (288)
68 PRK03001 M48 family peptidase; 20.4 1.6E+02 0.0034 31.9 5.1 15 345-359 124-138 (283)
69 PF09292 Neil1-DNA_bind: Endon 20.3 5 0.00011 28.4 -4.0 19 760-778 9-27 (39)
No 1
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=2.3e-147 Score=1263.78 Aligned_cols=824 Identities=38% Similarity=0.633 Sum_probs=666.7
Q ss_pred CCCCCCCCC----cCCCCCCCCcEEEEEEEEEE-EeccCcEEEEEEEEEEEc--CCcCeEEEeccCceeeEEEEcCeeee
Q 002783 1 MAKPRKPKN----EETKVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTE 73 (881)
Q Consensus 1 ~~~~~~~~~----~~p~~~~~~~~~~hy~l~L~-id~~~~~~~G~v~I~i~~--~~~~~I~L~a~~l~I~~V~v~g~~~~ 73 (881)
|++.|+.++ ++..+.+++..++||.|+|+ ||+.++++.|.++|+|.+ ++++.|.|||++|+|.+|.|+|..+.
T Consensus 3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~ 82 (1180)
T KOG1932|consen 3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK 82 (1180)
T ss_pred cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence 556666554 23344666677999999999 999999999999999984 68999999999999999999999999
Q ss_pred eeeCCCCcccchhhhhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhhhhhhcccCCCCCCccCCC
Q 002783 74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN 153 (881)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~ 153 (881)
|.|.++....+.. ..|.. +..+..........|.. + ..+.++|.|.++++.... +.+ ..
T Consensus 83 f~y~d~~q~~~~~-~~~~~-~l~~~s~~~~~~~~y~~-l-~~~~g~L~I~ipk~~~~~--~ee---------------~~ 141 (1180)
T KOG1932|consen 83 FIYNDPTQNDCTD-EIWQR-VLDPASQSHFLAVQYED-L-DEDNGELLIKIPKESKKV--GEE---------------LK 141 (1180)
T ss_pred eeecchhhhhhhh-hhhhh-hhhhhhhhhhHHHhhhc-c-ccCCCeEEEEcCchhhhh--hhh---------------cc
Confidence 9999885444422 22221 10010111111112221 1 223678999876542111 110 01
Q ss_pred ceEEEEEEEEecCCcceeeeec---------eEeccCcc--CCcceeEecCCCCCCeeEEEEEEEEeCCeEEEEcCcccc
Q 002783 154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQI--RRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY 222 (881)
Q Consensus 154 ~~~~~i~y~~~~~~~G~~f~~~---------~~~T~~ep--~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~ 222 (881)
...++|+|.+++|..|++|++. +++|.+.+ .+||+||||+|+++.+|||+|++++|++++++++|++.+
T Consensus 142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~ 221 (1180)
T KOG1932|consen 142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE 221 (1180)
T ss_pred ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence 2347799999999999999754 34555433 368999999999999999999999999999999999999
Q ss_pred eeeccCCCCceEEEEecCCCCcceeeEEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 002783 223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF 302 (881)
Q Consensus 223 ~~~~~~~~~~~~~~f~~t~p~s~y~iafaVG~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~ 302 (881)
++.++ |..+++++|+.+.|+++..||||||+|+.+..+.+.++++||+|+..+.+++++-.+.++++|||++||..|||
T Consensus 222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF 300 (1180)
T KOG1932|consen 222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF 300 (1180)
T ss_pred eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 99886 78899999999999999999999999999988888999999999999999999999999999999999988999
Q ss_pred CCccEEEECCCCcccccccccchhhcccccccCcccchhhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHH
Q 002783 303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD 382 (881)
Q Consensus 303 ~k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~ 382 (881)
+.|++||||..+.. ....++|.++++++||+.+++|+.+.++..+|..||.||||+++||..|+|.||.+|+|.||..
T Consensus 301 ~~~k~VFvd~~~~~--i~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~ 378 (1180)
T KOG1932|consen 301 SCYKTVFVDEAAVE--ISSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG 378 (1180)
T ss_pred ceeeEEEecCCcce--eeecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence 99999999964322 2334479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCchHhHHHHHhhcchhhcccC-CCcccCCCCccccCCCCccccccccchhhhHHHHHHHHHHhh----ChHH
Q 002783 383 SFIKKFLGNNEARYRRYKANCAVCKADDS-GATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GSNF 457 (881)
Q Consensus 383 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~VL~mLe~~l----G~e~ 457 (881)
+|+++++|+|||||+.++.+++++..|.+ ++..+.. +++++. .| -.|+++.+|.+.+++ |.-.
T Consensus 379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~-----Pi~~s~---k~----~~~~~~~lh~~~r~~~~~s~~~~ 446 (1180)
T KOG1932|consen 379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTR-----PISPSM---KF----KLKGPFHLHISIRHLHTLSGSYG 446 (1180)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeecc-----CCCcch---hh----cccCcceeeecccceeecChhHH
Confidence 99999999999999999999999988873 4444331 111110 01 234555555554443 2223
Q ss_pred HHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHhcCCCccCHHhHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeecc
Q 002783 458 FRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536 (881)
Q Consensus 458 F~~~L~~yl~~~~~~~-~~~~~st~~f~~~~~~~~~~~~~~l~~f~~~Wv~~~G~P~l~v~~~~n~k~~~v~l~~~q~~~ 536 (881)
....+++++...+.++ .+...+.+.|+++++.++. ..++.||++|+++.|+|++.+.+.||++++.|++.+.|.+.
T Consensus 447 ~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~---~~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~ 523 (1180)
T KOG1932|consen 447 MAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASK---MLLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVR 523 (1180)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh---hHHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhh
Confidence 3344444444444433 1112344555555555542 12689999999999999999999999999999999999665
Q ss_pred CCCCCCCcccc------CCCCCC----CCCCCCccceeEEEEEeccCCcccccccccCCCcceEEEEeeccchhhhhhcC
Q 002783 537 VKPDSRTPVLS------SNTDSE----NRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALK 606 (881)
Q Consensus 537 ~~~~~~~~~~~------~~~~~~----~~~~~~~~~~pltvri~e~dg~~eh~~~~~~~~~~~~~~i~~~~k~~~~r~~~ 606 (881)
+...+.....+ ...+.+ ...+...|+||||||+||.||+|+|++ +| ++.|+++|||||+| +|.+|
T Consensus 524 ~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~l-qi-~~~~~k~dI~chsK---~R~~k 598 (1180)
T KOG1932|consen 524 TGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTL-QI-DGDFTKLDIQCHSK---SRRQK 598 (1180)
T ss_pred hccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeE-Ee-cCcccccceeeccc---ccccC
Confidence 44332222111 001111 112225699999999999999999986 34 56699999999999 45577
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCceEEEecCCCceeeeecccCchhHHHHHHhhcCChHHHHHHHHHHHcCCCC
Q 002783 607 PKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL 686 (881)
Q Consensus 607 ~k~~~~~~~~~~~~d~~~~~~~~~~~~~~~~WIr~D~~~~~l~~v~~~q~~~m~~~qL~~d~dv~aq~eai~~L~~~~~~ 686 (881)
+||.+..+|||++.| ++.+| .++|++|||+|||+||||+|+++||+|||++||++||||+||+|||++|++.|++
T Consensus 599 kKk~~l~sgEE~e~d-l~~~d----~~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~ 673 (1180)
T KOG1932|consen 599 KKKVPLMSGEEIEMD-LTNMD----EESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST 673 (1180)
T ss_pred CcCCCCCChhhhccc-ccccC----ccCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc
Confidence 888888899998877 66664 3799999999999999999999999999999999999999999999999998866
Q ss_pred chhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 002783 687 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPH 766 (881)
Q Consensus 687 ~~~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~~~~ai~~ 766 (881)
..+++|+|+|.|++||||||++||.||+++++++.+|.|++||+++|++.||+.+++|||||||+||++|||||+||.
T Consensus 674 --~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~ 751 (1180)
T KOG1932|consen 674 --ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPV 751 (1180)
T ss_pred --hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHH
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccccH-------------HHHHHHHHHH
Q 002783 767 AVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSI-------------LFLSSLLKRI 833 (881)
Q Consensus 767 a~~~~r~~~~~~p~~v~~~l~~~l~~ndns~n~y~D~~y~a~li~al~~~~~~~~~~-------------~~~~~~~~~i 833 (881)
|+|.+|+.+|.||.+|++||||||+|||||+|+|||+||||+||+||++..++..+. .+...+++||
T Consensus 752 a~a~lR~~~g~cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~~~~~~~ei 831 (1180)
T KOG1932|consen 752 AFASLRGREGKCPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRDVRVLIDEI 831 (1180)
T ss_pred HHHHhccccCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999976654322 2344599999
Q ss_pred HHHHhccccccCCCchhHHHHHHHHHHHHHhhcCcccchhhhhc
Q 002783 834 DRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLGFQYYM 877 (881)
Q Consensus 834 ~r~~~~d~~~psy~~~vt~~~l~~~~~~~~~~~~~~~~~~~~~~ 877 (881)
+|+|+||+++|||.++|+++||+++.++ +..|++|+++..+.
T Consensus 832 ~r~L~~e~l~pS~k~ii~~~~l~~~~~l--~k~~hl~s~p~~~~ 873 (1180)
T KOG1932|consen 832 TRLLNMEKLMPSFKHIIKVSALKAIREL--QKSGHLPSLPELLE 873 (1180)
T ss_pred HHHHHHHhhchhhhceEEeeechhhhhh--hhccccccCchhhh
Confidence 9999999999999999999999999886 57999999986554
No 2
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-78 Score=737.79 Aligned_cols=651 Identities=18% Similarity=0.246 Sum_probs=471.0
Q ss_pred CCCCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcCeEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhcc
Q 002783 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWR 91 (881)
Q Consensus 13 ~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~~~~~~~~~~~~~~~~~~~ 91 (881)
....+.+.|.||+|.|.+++....|.|.+.|.+.+ .+++.|.||+.++.|.++.+......-.-... ..
T Consensus 29 ~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~---~~------- 98 (882)
T KOG1046|consen 29 YRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLE---VS------- 98 (882)
T ss_pred ccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCccccc---cc-------
Confidence 44678899999999999999999999999999998 56899999999999999987442111000000 00
Q ss_pred ccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhhhhhhcccCCCCCCccCCCc-eEEEEEEEEecCCcce
Q 002783 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNV-KLVRIDYWVEKVEVGI 170 (881)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~i~y~~~~~~~G~ 170 (881)
.........+.+.+..+ +..+. .++|. +.|.|.++... |+|+..|...+ .|.
T Consensus 99 -------------------~~~~~~~~~l~~~~~~~---l~~~~-~y~L~--i~f~g~l~~~~~G~y~s~y~~~~--~~~ 151 (882)
T KOG1046|consen 99 -------------------VEEKEQEETLVFPLNET---LLAGS-SYTLT--IEFTGKLNDSSEGFYRSSYTDSE--GSE 151 (882)
T ss_pred -------------------ccccccceEEEEEcccc---cccCC-eEEEE--EEEeEeecCCcceeeeecccCCC--Cce
Confidence 00000001244433211 11111 13333 67788888765 99999997533 232
Q ss_pred eeeeceEeccCccCCcceeEecCCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCceEEEEecCCCCcceeeEE
Q 002783 171 HFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITL 250 (881)
Q Consensus 171 ~f~~~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~y~iaf 250 (881)
.+++.||+||++||++|||||+|++||||.|+|.+|++++++|||+++++... ++++++.+|+.|||||+|++||
T Consensus 152 ---~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl~hp~~~~aLSNm~v~~~~~~--~~~~~~~~F~~Tp~MstYLvAf 226 (882)
T KOG1046|consen 152 ---KSIAATQFEPTDARRAFPCFDEPAFKATFTITLVHPKGYTALSNMPVIKEEPV--DDGWKTTTFEKTPKMSTYLVAF 226 (882)
T ss_pred ---EEEEEeccCccchhhcCCCCCcccccCceEEEEEecCCceEeecCcccccccc--cCCeeEEEEEecCCCchhhhee
Confidence 57889999999999999999999999999999999999999999999877654 3449999999999999999999
Q ss_pred EEeeceEeecCCC--CcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEECCCCcccccccccchhhc
Q 002783 251 AVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF 328 (881)
Q Consensus 251 aVG~f~~~~~~~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~ 328 (881)
+||+|+..+.... .++++|++|+...+..++++.+.++|+||+++||++||++|+|+|+||++..++|||| ||++|
T Consensus 227 ~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENw--GLvty 304 (882)
T KOG1046|consen 227 AVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENW--GLVTY 304 (882)
T ss_pred eeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcC--cceee
Confidence 9999999877654 7899999999999999999999999999999999999999999999999999999999 89999
Q ss_pred -ccccccCcccchhhhh--hHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCchHhHHHHHhhcch
Q 002783 329 -SSQILYDEKVIDQAID--TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAV 405 (881)
Q Consensus 329 -~~~lL~~~~~~~~~~~--~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~~~~~~~~~~~~~~ 405 (881)
+..||+++.......+ ...+||||+|||||||+|||+||+|+|||||||+||+++.++..++.... ++.+
T Consensus 305 re~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~-------~~~~ 377 (882)
T KOG1046|consen 305 RETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDI-------WEQF 377 (882)
T ss_pred eehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchhh-------HHHH
Confidence 6789999876544333 44589999999999999999999999999999999999999977665432 1111
Q ss_pred hhcccCCCcccCCCCccccC-----CCCccccccccchhhhHHHHHHHHHHhhChHHHHHHHHHHHHHhcCCCCCCCCCH
Q 002783 406 CKADDSGATALSSSASCKDL-----YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLST 480 (881)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~f~~i~Y~Kg~~VL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st 480 (881)
+......++..++..+++++ .+.++.++|+.++|.||++|||||+..+|++.|++||+.||.+++++| +++
T Consensus 378 ~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~n----a~~ 453 (882)
T KOG1046|consen 378 LLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVLRMLESLLGEEVFRKGLRSYLKKHQYSN----AKT 453 (882)
T ss_pred HHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCC----CCc
Confidence 11111122233333333333 244556789999999999999999999999999999999999999997 467
Q ss_pred HHHHHHHHHhcCCCccCHHhHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCccccCCCCCCCCCCCCc
Q 002783 481 KEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIG 560 (881)
Q Consensus 481 ~~f~~~~~~~~~~~~~~l~~f~~~Wv~~~G~P~l~v~~~~n~k~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (881)
+|+++.++.. .+.++..||+.|+.|+|||+++|..+++ .+.++|.++..... ..+....
T Consensus 454 ~DLw~~l~~~---~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~----~~~l~Q~rf~~~~~--------------~~~~~~~ 512 (882)
T KOG1046|consen 454 EDLWDALEEG---SGLDVSELMDTWTKQMGYPVVTVERNGD----SLTLTQERFLSDPD--------------PSEDNYL 512 (882)
T ss_pred hhHHHHHhcc---CCCCHHHHHhhhhcCCCCceEEEEecCC----EEEEehhhhccCCC--------------ccccCcc
Confidence 7777666622 2578999999999999999999998754 77888888764321 1123568
Q ss_pred cceeEEEEEeccCCcccccccccCCCcceEEEEeeccchhhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEEE
Q 002783 561 WPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIR 640 (881)
Q Consensus 561 ~~~pltvri~e~dg~~eh~~~~~~~~~~~~~~i~~~~k~~~~r~~~~k~~~~~~~~~~~~d~~~~~~~~~~~~~~~~WIr 640 (881)
|.+|+++....... + .. .| ++.+.+ . + ..+.+.+||+
T Consensus 513 w~iPl~~~~~~~~~-~--~~------~~--~~~~~~---------------~----------~-------~l~~~~~wi~ 549 (882)
T KOG1046|consen 513 WWIPLTYTTSGSGS-V--PK------FW--LSSKST---------------T----------I-------KLPESDQWIK 549 (882)
T ss_pred cceeEEEEcCCCCc-c--ce------ee--ecCCCc---------------c----------e-------ecCCCCeEEE
Confidence 99999997654211 1 00 11 110000 0 0 0122338999
Q ss_pred ecCCCceeeeecccCchhHH---HHHHhhcCChH-----HHH-HHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHH
Q 002783 641 ADPEMEYLAEIHFNQPVQMW---INQLEKDGDVV-----AQA-QAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEA 711 (881)
Q Consensus 641 ~D~~~~~l~~v~~~q~~~m~---~~qL~~d~dv~-----aq~-eai~~L~~~~~~~~~~~~~L~~~l~d~~~f~~vR~~A 711 (881)
+|++..+++|| ++++.+| +.||.. ++.. +|+ +.+.+|+.....+...+..|...+.+|. .|.++..|
T Consensus 550 ~N~~~~g~yRV--~Yd~~~w~~l~~~l~~-~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~-~~~p~~~~ 625 (882)
T KOG1046|consen 550 VNLEQTGYYRV--NYDDENWALLIEQLKN-HESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNET-DYVPWSAA 625 (882)
T ss_pred EeCCcceEEEE--EeCHHHHHHHHHHHhh-cCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccc-ccchHHHH
Confidence 99999999999 6666666 667755 4333 333 6777888887777777788999999986 69999999
Q ss_pred HHHHHhhccc-cc-cccch-HHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHH
Q 002783 712 AYALANTASE-ET-DWAGL-LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQ 788 (881)
Q Consensus 712 a~aL~~~~~~-~~-~~~g~-~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~~~~ai~~a~~~~r~~~~~~p~~v~~~l~~ 788 (881)
+.+|..+... .. .+.-+ ..+.+.++.. +..- +. ....+.. ..-.+...+....|.. .++.|-..+...+-+
T Consensus 626 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~-~~~~~~~-~~~~l~~~~~~~a~~~--~~~~~~~~a~~~f~~ 699 (882)
T KOG1046|consen 626 IRSLYKLHSLEDTEIYSKFKEFVKKLILPI-FEKL-GW-SDGADSS-LDNMLRVSVLSFACRF--GHEECLKKAVELFRQ 699 (882)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHH-HHHh-cC-Cccccch-hHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHH
Confidence 8988887761 11 00011 1111111111 0100 00 0111111 2223344444444444 678888888888888
Q ss_pred Hhhc
Q 002783 789 LLKY 792 (881)
Q Consensus 789 ~l~~ 792 (881)
.+..
T Consensus 700 ~~~~ 703 (882)
T KOG1046|consen 700 WLAG 703 (882)
T ss_pred HHhc
Confidence 8886
No 3
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=4.5e-73 Score=682.82 Aligned_cols=563 Identities=16% Similarity=0.222 Sum_probs=418.2
Q ss_pred CCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc--CCcCeEEEeccCceeeEEEEcCeee---eeeeCCCCcccchhhhh
Q 002783 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPT---EFEYYPHNHQNVENEKR 89 (881)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~--~~~~~I~L~a~~l~I~~V~v~g~~~---~~~~~~~~~~~~~~~~~ 89 (881)
..++|.+.||+|+|++|++...++|.++|+..+ .+++.|.||+++|+|.+|.+||+++ .|.+.+.
T Consensus 15 ~~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~~~~~~~~~~~~~---------- 84 (875)
T PRK14015 15 RPPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQPLAPSAYELDEE---------- 84 (875)
T ss_pred CCCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCEEcCccceEEcCC----------
Confidence 457899999999999999999999999998765 4578999999999999999999876 4544321
Q ss_pred ccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhhhhhhcccCCCCCCccCCCceEEEEEEEEecCCcc
Q 002783 90 WRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVG 169 (881)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~~~~~G 169 (881)
.|+|... | . .++++ +.|++.+..+. +-.|
T Consensus 85 -----------------------------~L~I~~l-~-----~---~~~l~--I~y~~~P~~n~-----------~l~G 113 (875)
T PRK14015 85 -----------------------------GLTIENL-P-----D---RFTLE--IETEIDPEANT-----------ALEG 113 (875)
T ss_pred -----------------------------EEEEecC-C-----c---cEEEE--EEEEEecCCCC-----------Ccee
Confidence 3555310 0 0 12222 23333222110 0123
Q ss_pred eeeeeceEeccCccCCcceeEecCCCCCCeeEEEEEEEEeC-Ce-EEEEcCcccceeeccCCCCceEEEEecCCCCccee
Q 002783 170 IHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQ-NL-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKW 247 (881)
Q Consensus 170 ~~f~~~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~-~~-~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~y~ 247 (881)
+++...+++|||||++||+||||+|+|+.|+||+++|++|+ .| +++|||+++++.. ..+++++++|+.++|||+|+
T Consensus 114 ly~s~~~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~--~~~g~~~~~w~~~~PmpsYL 191 (875)
T PRK14015 114 LYRSGGMFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLVESGE--LPDGRHWATWEDPFPKPSYL 191 (875)
T ss_pred eEEECCEEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccccCeEEecCCcccccee--ccCCeEEEEEEeCCCcccce
Confidence 33333467999999999999999999999999999999999 48 6899999987643 24678999999999999999
Q ss_pred eEEEEeeceEeecC----C--CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEECCCCccccccc
Q 002783 248 ITLAVAPFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTF 321 (881)
Q Consensus 248 iafaVG~f~~~~~~----~--~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ 321 (881)
++|+||+|+++++. . +.++++|++|+..+.+.++++.++++|+|||++||.||||++|++|++|++..++|||+
T Consensus 192 ~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~ 271 (875)
T PRK14015 192 FALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENK 271 (875)
T ss_pred EEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccc
Confidence 99999999998753 1 36789999999999999999999999999999999999999999999998877899999
Q ss_pred ccchhhcc-cccccCcccc-hhhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCchHhHHH
Q 002783 322 GAAMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR 398 (881)
Q Consensus 322 gagl~~~~-~~lL~~~~~~-~~~~-~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~~~~~~~ 398 (881)
||++|. ..+|.++... +... ....+||||+|||||||+|||+||+|+|||||||+|++.++.....+....++..
T Consensus 272 --Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~ 349 (875)
T PRK14015 272 --GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIED 349 (875)
T ss_pred --cccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 788895 4577776542 2222 2345899999999999999999999999999999999988877765432211111
Q ss_pred HHhhcchhhcccCCCcccCCCCccccCCC---CccccccccchhhhHHHHHHHHHHhhChHHHHHHHHHHHHHhcCCCCC
Q 002783 399 YKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPV 475 (881)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~f~~i~Y~Kg~~VL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~ 475 (881)
..... . ..+..++.+..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|+++|++++
T Consensus 350 ~~~l~----~---~~~~~D~~~~a~pi~p~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~-- 420 (875)
T PRK14015 350 VRVLR----A---AQFAEDAGPMAHPVRPDSYIEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQA-- 420 (875)
T ss_pred HHHHh----h---hcccccccccCCCCCCcchhhHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC--
Confidence 11100 0 0111121122233322 2445678999999999999999999999999999999999999985
Q ss_pred CCCCHHHHHHHHHHhcCCCccCHHhHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCccccCCCCCCCC
Q 002783 476 RTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENR 555 (881)
Q Consensus 476 ~~~st~~f~~~~~~~~~~~~~~l~~f~~~Wv~~~G~P~l~v~~~~n~k~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~ 555 (881)
+++++|++.+++++ |.|+.+|+ +|++++|+|+++|+.+|+..++.++++++|.+...+. .
T Consensus 421 --at~~Df~~ale~as---g~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~~~~~--------------~ 480 (875)
T PRK14015 421 --VTCEDFVAAMEDAS---GRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTPPTPG--------------Q 480 (875)
T ss_pred --CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCCCCCC--------------C
Confidence 79999999999887 46899986 8999999999999999987777888999887542110 1
Q ss_pred CCCCccceeEEEEEeccCCcccccccccCCCc-ceEEEEeeccchhhhhhcCCCCCCCCCCCCCCCCccccccccccCCC
Q 002783 556 DGDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMES 634 (881)
Q Consensus 556 ~~~~~~~~pltvri~e~dg~~eh~~~~~~~~~-~~~~~i~~~~k~~~~r~~~~k~~~~~~~~~~~~d~~~~~~~~~~~~~ 634 (881)
.....|.+|++|.+...+|.-.. +...++. -..+++... +. . + ..+ .-.+.
T Consensus 481 ~~~~~~~iPl~i~l~~~~G~~~~--~~~~~~~~~~~l~l~~~--------------------~q--~-f-~f~--~~~~~ 532 (875)
T PRK14015 481 PEKQPLHIPVAIGLLDPDGKELP--LQLEGEPVERVLELTEA--------------------EQ--T-F-TFE--NVAER 532 (875)
T ss_pred CCCceEEEEEEEEEEcCCCceee--ccccCCccceEEEEcCC--------------------ee--E-E-EEc--CCCCC
Confidence 12347999999998887775210 0011110 011222100 00 0 0 000 00134
Q ss_pred CceEEEecCCCceeeeecccCchhHHHHHHhhcCChHHHHHHHHHHHcC----------C--CCchhHHhHHHhhhccC
Q 002783 635 PLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL----------P--HLSFNVVNTLNNFLSDS 701 (881)
Q Consensus 635 ~~~WIr~D~~~~~l~~v~~~q~~~m~~~qL~~d~dv~aq~eai~~L~~~----------~--~~~~~~~~~L~~~l~d~ 701 (881)
|+ +.+|.+|.-..++.+++++..+..|+++|.|..+|.||++.|++. + ..+.....++..+|.|+
T Consensus 533 p~--~s~~r~fsapv~~~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 609 (875)
T PRK14015 533 PV--PSLLRGFSAPVKLEYDYSDEDLLFLMAHDSDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDE 609 (875)
T ss_pred ce--EEecCCCCCcEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCC
Confidence 45 799999999999999999999999999999999999999888643 0 11334555666666664
No 4
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=2.1e-73 Score=693.99 Aligned_cols=563 Identities=14% Similarity=0.139 Sum_probs=399.6
Q ss_pred CCcEEEEEEEEEEEeccCc--EEEEEEEEEEEc-CCcCeEEEeccCceeeEEEEcCe-eeeeeeCCCCcccchhhhhccc
Q 002783 17 SGAVVRHQKLCLSIDMEKH--QIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE-PTEFEYYPHNHQNVENEKRWRS 92 (881)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~--~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~-~~~~~~~~~~~~~~~~~~~~~~ 92 (881)
..+++.||+|.|+++.+.. .+.|.++|++.+ .+++.|.||+.+++|++|++||. ++.+.+.+. .+.
T Consensus 12 ~~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~~~~~~~~~~~--~i~-------- 81 (831)
T TIGR02412 12 SLITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGILDVAPVYDGS--RIP-------- 81 (831)
T ss_pred HhccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCcccCccccCCC--EEE--------
Confidence 4578999999999986655 458888888876 56889999999999999999996 333322211 000
Q ss_pred cCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhhhhhhcccCCCCCCccCC-CceEEEEEEEEecCCccee
Q 002783 93 MVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEKVEVGIH 171 (881)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~i~y~~~~~~~G~~ 171 (881)
.+ .+..+ .++|.| .|.|.... ..|+++ | . .+.+|
T Consensus 82 ---l~-------------~l~~g-~~~l~i----------------------~~~~~~~~~~~Gl~~--~-~-~~~~g-- 116 (831)
T TIGR02412 82 ---LP-------------GLLTG-ENTLRV----------------------EATRAYTNTGEGLHR--F-V-DPVDG-- 116 (831)
T ss_pred ---cc-------------CCCCC-ceEEEE----------------------EEEEEecCCCceEEE--E-E-eCCCC--
Confidence 00 01111 122333 22222222 236665 2 2 24455
Q ss_pred eeeceEeccCccCCcceeEecCCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCceEEEEecCCCCcceeeEEE
Q 002783 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLA 251 (881)
Q Consensus 172 f~~~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~y~iafa 251 (881)
..+++|||||.+||+||||||+|++||+|+|+|++|++|+|+|||++.+.. ..+++++++|..++|||+|++||+
T Consensus 117 --~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~---~~~~~~~~~F~~t~pmstYL~a~~ 191 (831)
T TIGR02412 117 --EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVT---PEPADRRWEFPETPKLSTYLTAVA 191 (831)
T ss_pred --eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceEECCCcccccc---ccCCCeEEEecCCCCcccceEEEE
Confidence 367899999999999999999999999999999999999999999987554 234678999999999999999999
Q ss_pred EeeceEeecCC-CCcEEEEEcCCchhH--HHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEECCCCcccccccccchhhc
Q 002783 252 VAPFEVLPDHH-QSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF 328 (881)
Q Consensus 252 VG~f~~~~~~~-~~~v~~~~~p~~~~~--~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~ 328 (881)
||+|+.++... +.++++|++|+..+. .+++++.++++|+|||++||+||||+||++|++|++..++|||| |+++|
T Consensus 192 vG~f~~~~~~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~--Glit~ 269 (831)
T TIGR02412 192 AGPYHSVQDESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENA--GCVTF 269 (831)
T ss_pred EeceEEEeecCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCccccc--ceeee
Confidence 99999987543 568999999987664 56899999999999999999999999999999998777899999 78999
Q ss_pred ccccccCcccchhh-hhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCchHhHHHHHhhcchhh
Q 002783 329 SSQILYDEKVIDQA-IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCK 407 (881)
Q Consensus 329 ~~~lL~~~~~~~~~-~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 407 (881)
.+.+|+++...+.. .....+|+||+|||||||+|||+||+|+|||||||+||+++++++..|.... +.....
T Consensus 270 ~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~-~~~f~~------ 342 (831)
T TIGR02412 270 AENFLHRAEATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDA-WTTFAA------ 342 (831)
T ss_pred chhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchH-HHHHHH------
Confidence 77677665443222 1234589999999999999999999999999999999999999988764332 111100
Q ss_pred cccCCCcccCCCCccccC----C-CCccccccccchhhhHHHHHHHHHHhhChHHHHHHHHHHHHHhcCCCCCCCCCHHH
Q 002783 408 ADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKE 482 (881)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~----~-~~~~~~~f~~i~Y~Kg~~VL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~ 482 (881)
.....++..++.++.+++ . +.++...|+.++|.||++|||||+..||++.|+++|+.|+++|++++ ++++|
T Consensus 343 ~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~n----at~~D 418 (831)
T TIGR02412 343 QGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGN----ATLDD 418 (831)
T ss_pred HHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCC----CCHHH
Confidence 000001111111222222 1 23445679999999999999999999999999999999999999996 69999
Q ss_pred HHHHHHHhcCCCccCHHhHHHhhhcCCCccEEEEEEEEeccCcEEE-EEEEeeccCCCCCCCccccCCCCCCCCCCCCcc
Q 002783 483 FRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVE-LAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (881)
Q Consensus 483 f~~~~~~~~~~~~~~l~~f~~~Wv~~~G~P~l~v~~~~n~k~~~v~-l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (881)
|++.+++++ |.++++||++|++++|+|+++|+..++. +.+. +.+.|. . ....|
T Consensus 419 l~~~l~~~s---g~dl~~~~~~W~~~~G~P~l~v~~~~~~--~~~~~~~~~~~--~-------------------~~~~~ 472 (831)
T TIGR02412 419 LIDSLAKAS---GRDLSAWSDAWLETAGVNTLTPEITTDG--GVVSALYPESS--G-------------------PPRPH 472 (831)
T ss_pred HHHHHHHHh---CCCHHHHHHHHHcCCCCceEEEEEEECC--CeEEEEEEecC--C-------------------CCCCe
Confidence 999999887 4689999999999999999999988763 3333 222210 0 01247
Q ss_pred ceeEEEEEeccCCcccccccccCCCcceEEEEeeccchhhhhhcCCCCCCCCCCCCCCCCccccccccccCCCCceEEEe
Q 002783 562 PGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRA 641 (881)
Q Consensus 562 ~~pltvri~e~dg~~eh~~~~~~~~~~~~~~i~~~~k~~~~r~~~~k~~~~~~~~~~~~d~~~~~~~~~~~~~~~~WIr~ 641 (881)
++|+++... .++.. + ...+ ..+...+. +. . +... ....+..||.+
T Consensus 473 ~ip~~~~~~-~~~~~-~------~~~~--~~~~~~~~----~~------~-----------~~~~----~~~~~~~~v~~ 517 (831)
T TIGR02412 473 RIAIGLYDL-DRDDL-R------RTTL--VPLTISGE----RT------A-----------VPQL----VGKRAPALVLL 517 (831)
T ss_pred eEEEeeeec-CCCcc-e------eeeE--EEEEEecC----ce------e-----------ehhh----cCCCCCCEEEE
Confidence 788776321 11111 0 0011 12222111 00 0 0000 00123479999
Q ss_pred cCCCceeeeecccCchhHH---HHHHhhcCChHHHH---HHHHHHHcCCCCchhHHhH-HHhhhccCcchhHHHHHHHHH
Q 002783 642 DPEMEYLAEIHFNQPVQMW---INQLEKDGDVVAQA---QAIAALEALPHLSFNVVNT-LNNFLSDSKAFWRVRIEAAYA 714 (881)
Q Consensus 642 D~~~~~l~~v~~~q~~~m~---~~qL~~d~dv~aq~---eai~~L~~~~~~~~~~~~~-L~~~l~d~~~f~~vR~~Aa~a 714 (881)
|.+..++||| ++++.+| ..+|....+.+.|. +++.+|++.+..+...... +.+.|.+|+ -|-|+.++...
T Consensus 518 N~~~~gyyrv--~yd~~~~~~l~~~l~~~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~-~~~v~~~~~~~ 594 (831)
T TIGR02412 518 NDDDLTYAKV--RLDPTSFDTVLAALSKLPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSET-DYAVVQQVLSQ 594 (831)
T ss_pred eCCCcEEEEE--ECCHHHHHHHHHHhhhCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCC-chHHHHHHHHH
Confidence 9999999999 5555555 55665555565444 7777888766665543333 447788876 47888888777
Q ss_pred HH
Q 002783 715 LA 716 (881)
Q Consensus 715 L~ 716 (881)
|.
T Consensus 595 l~ 596 (831)
T TIGR02412 595 LL 596 (831)
T ss_pred HH
Confidence 77
No 5
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=9.7e-72 Score=669.15 Aligned_cols=541 Identities=16% Similarity=0.200 Sum_probs=406.9
Q ss_pred CCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcCeEEEeccCceeeEEEEcCeeee---eeeCCCCcccchhhhhcc
Q 002783 16 NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE---FEYYPHNHQNVENEKRWR 91 (881)
Q Consensus 16 ~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~---~~~~~~~~~~~~~~~~~~ 91 (881)
.++|.+.||+|+|+++++...++|.++|++.+ .+.+.|.||+++|+|.+|.+||+.+. |.+.+
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~~~~~~~~~~~~------------- 70 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGKPLAAGDYQLDD------------- 70 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCEecCcceEEEcC-------------
Confidence 46799999999999999999999999999875 35678999999999999999997542 33221
Q ss_pred ccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhhhhhhcccCCCCCCccCCCceEEEEEEEEecCCccee
Q 002783 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIH 171 (881)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~~~~~G~~ 171 (881)
..|+|... | +.++++ +.|.+.+.. +.+..|++
T Consensus 71 --------------------------~~L~I~~~-~--------~~~~l~--i~~~~~p~~-----------n~~l~GlY 102 (863)
T TIGR02414 71 --------------------------ETLTIASV-P--------ESFTLE--IETEIHPEE-----------NTSLEGLY 102 (863)
T ss_pred --------------------------CEEEEeeC-C--------ccEEEE--EEEEeeccc-----------CCCCeEEE
Confidence 12555310 0 012222 122111111 11123444
Q ss_pred eeeceEeccCccCCcceeEecCCCCCCeeEEEEEEEEeCC-e-EEEEcCcccceeeccCCCCceEEEEecCCCCcceeeE
Q 002783 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (881)
Q Consensus 172 f~~~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~-~-~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~y~ia 249 (881)
+.+.+++|||||++||+||||+|+|+.||+|+++|++|++ | +++|||.++++.. .++++++++|+.++|||+|++|
T Consensus 103 ~s~~~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~--~~~g~~~~~f~~t~pmptYLfA 180 (863)
T TIGR02414 103 KSGGNFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGE--LPDGRHWAEWEDPFPKPSYLFA 180 (863)
T ss_pred EeCCeEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCcccccee--cCCCeEEEEEeCCCCcChhHhe
Confidence 4445689999999999999999999999999999999996 6 6789999876543 2467889999999999999999
Q ss_pred EEEeeceEeecCC------CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEECCCCccccccccc
Q 002783 250 LAVAPFEVLPDHH------QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (881)
Q Consensus 250 faVG~f~~~~~~~------~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga 323 (881)
|+||+|+++++.. +.++++|++|+..+.++++++.++++|+|||++||.||||+||++|++|++..++||||
T Consensus 181 ~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~-- 258 (863)
T TIGR02414 181 LVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENK-- 258 (863)
T ss_pred EEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCcccccc--
Confidence 9999999987531 35689999999999999999999999999999999999999999999998878899999
Q ss_pred chhhc-ccccccCcccc-hhhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCchHhHHHHH
Q 002783 324 AMGIF-SSQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK 400 (881)
Q Consensus 324 gl~~~-~~~lL~~~~~~-~~~~-~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~~~~~~~~~ 400 (881)
||++| +..+|.++... +... ....+||||+|||||||+|||+||+++|||||||+|++.++.....+....++....
T Consensus 259 GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~ 338 (863)
T TIGR02414 259 GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVR 338 (863)
T ss_pred ceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 78899 45677777543 2222 234589999999999999999999999999999999998887776554322221111
Q ss_pred hhcchhhcccCCCcccCCCCccccCCC---CccccccccchhhhHHHHHHHHHHhhChHHHHHHHHHHHHHhcCCCCCCC
Q 002783 401 ANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRT 477 (881)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~f~~i~Y~Kg~~VL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~ 477 (881)
.... ..+..++.+..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|+++|++++
T Consensus 339 ~lr~-------~~f~~D~~p~~~Pi~~~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~~---- 407 (863)
T TIGR02414 339 LLRA-------HQFPEDAGPMAHPVRPESYVEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQA---- 407 (863)
T ss_pred HHHh-------hhhcccccccCCCCCCcchhhHHhccchHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC----
Confidence 1100 0111122222233322 2445678999999999999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHhcCCCccCHHhHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCccccCCCCCCCCCC
Q 002783 478 LSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 557 (881)
Q Consensus 478 ~st~~f~~~~~~~~~~~~~~l~~f~~~Wv~~~G~P~l~v~~~~n~k~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 557 (881)
+++++|++.+++++ +.|+.+|+ +|++|+|+|+++|+.+|+.++...+|+++|.+...+ ....
T Consensus 408 at~~Df~~ale~as---g~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~~~~--------------~~~~ 469 (863)
T TIGR02414 408 VTCEDFVAAMEDAS---GRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTPPTP--------------GQTE 469 (863)
T ss_pred CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCCCCC--------------CCCc
Confidence 79999999999887 46899985 899999999999999998777778888888753211 0112
Q ss_pred CCccceeEEEEEeccCCcccccccccCCCc--ceEEEEeeccchhhhhhcCCCCCCCCCCCCCCCCccccccccc-c-CC
Q 002783 558 DIGWPGMMSIRVHELDGMYDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRS-S-ME 633 (881)
Q Consensus 558 ~~~~~~pltvri~e~dg~~eh~~~~~~~~~--~~~~~i~~~~k~~~~r~~~~k~~~~~~~~~~~~d~~~~~~~~~-~-~~ 633 (881)
...|.+|+.|.+...+|.-.- ....++. -..+++... + . ...+ . .+
T Consensus 470 ~~~~~iPl~i~l~~~~G~~~~--~~~~~~~~~~~~l~l~~~--------------------~--~------~f~f~~~~~ 519 (863)
T TIGR02414 470 KKPLHIPIAVGLLGPNGRKLM--LSLDGERDTTRVLELTEA--------------------E--Q------TFVFEGIAE 519 (863)
T ss_pred CCceEEEEEEEEEeCCCCEee--ecccCCCCcceEEEEccC--------------------E--E------EEEEcCCCC
Confidence 347999999999988885110 0001110 011221100 0 0 0000 1 12
Q ss_pred CCceEEEecCCCceeeeecccCchhHHHHHHhhcCChHHHHHHHHHHHc
Q 002783 634 SPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (881)
Q Consensus 634 ~~~~WIr~D~~~~~l~~v~~~q~~~m~~~qL~~d~dv~aq~eai~~L~~ 682 (881)
.|+ +.++.+|.-..++.+++++..+..+|++|.|..+|.+|++.|++
T Consensus 520 ~p~--~sl~r~fsapv~l~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~ 566 (863)
T TIGR02414 520 KPV--PSLLRGFSAPVNLEYPYSDEDLLLLLAHDSDPFNRWEAGQRLAR 566 (863)
T ss_pred CCe--eeecCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 344 89999999999999999999999999999999999999988873
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=6.1e-66 Score=604.34 Aligned_cols=433 Identities=18% Similarity=0.254 Sum_probs=326.2
Q ss_pred CCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-C-CcCeEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhccccC
Q 002783 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-P-DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMV 94 (881)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~-~~~~I~L~a~~l~I~~V~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (881)
..++|.||+|+|++|+++++|+|.|+|++.+ . .++.|.||+++|+|++|.++|.++.|+.......
T Consensus 9 ~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~~~~------------ 76 (601)
T TIGR02411 9 KDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGLPADFAIGERKEP------------ 76 (601)
T ss_pred CCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCcccceEeccccCC------------
Confidence 6799999999999999999999999999986 3 4688999999999999999998877765431000
Q ss_pred CCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhhhhhhcccCCCCCCccCCCceEEEEEEEEecCCcceeeee
Q 002783 95 SSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDG 174 (881)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~~~~~G~~f~~ 174 (881)
....|.|.++.+ +..+ ..++++ +.|+|.++. .|+....+. ...+| ..
T Consensus 77 ---------------------~g~~L~I~l~~~---l~~g-~~~~l~--I~Y~~~~~~-~gl~~~~~~--~t~g~---~~ 123 (601)
T TIGR02411 77 ---------------------LGSPLTISLPIA---TSKN-KELVLN--ISFSTTPKC-TALQWLTPE--QTSGK---KH 123 (601)
T ss_pred ---------------------CCCeEEEEeCCc---cCCC-ceEEEE--EEEeecCCC-ceeEEeccc--ccCCC---CC
Confidence 012477766432 2111 122333 566665432 233211111 11122 14
Q ss_pred ceEeccCccCCcceeEecCCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCceEEEEecCCCCcceeeEEEEee
Q 002783 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (881)
Q Consensus 175 ~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~y~iafaVG~ 254 (881)
++++|||||.+||+||||+|+|+.|+||+++|++| ++|++||.++.+. .++..+++|..++|||+|++||+||+
T Consensus 124 py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~----~~~~~~~~F~~t~pmptYLia~avG~ 197 (601)
T TIGR02411 124 PYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGET----SNDPGKYLFKQKVPIPAYLIALASGD 197 (601)
T ss_pred CEEEECCcccchheeeeecCCcccceEEEEEEeeC--cceeccCCccccc----cCCCceEEEEeCCCcchhhheeeecc
Confidence 78899999999999999999999999999999999 9999998876543 23456889999999999999999999
Q ss_pred ceEeecCCCCcEEEEEcCCchhHHHHHHH-HHHHHHHHHHHHhCCCCCCCCccEEEEC-CCCcccccccccchhhccccc
Q 002783 255 FEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMGIFSSQI 332 (881)
Q Consensus 255 f~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~V~vp-~~~~~~~~~~gagl~~~~~~l 332 (881)
|+..+. +..+++|+.|+..+.+++.+. .++++++++|+++| ||||+|||+|++| ++..++|||+ |+++.+..+
T Consensus 198 ~~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~--~ltf~~~~l 272 (601)
T TIGR02411 198 LASAPI--GPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENP--NLTFATPTL 272 (601)
T ss_pred ceeccc--CCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCccceEEEecCcccccccccc--cceeecccc
Confidence 997643 567899999998888888888 89999999998865 9999999999884 5667899999 455446677
Q ss_pred ccCcccchhhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCchHhHHHH---Hhhcchhhcc
Q 002783 333 LYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY---KANCAVCKAD 409 (881)
Q Consensus 333 L~~~~~~~~~~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~~~~~~~~---~~~~~~~~~~ 409 (881)
|.+.+ ....+||||||||||||+||++||+|+|||||||+|++.+++++++|.....+... ......+..
T Consensus 273 l~~d~------s~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~- 345 (601)
T TIGR02411 273 IAGDR------SNVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESVKT- 345 (601)
T ss_pred ccCCh------hhhhhHHHHHHhhccCceeecCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHHHh-
Confidence 75432 12358999999999999999999999999999999999999999999876433321 111111110
Q ss_pred cCCCcccCCCCccccCCCCccccccccchhhhHHHHHHHHHHhhC-hHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 002783 410 DSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFAN 488 (881)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~VL~mLe~~lG-~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~~ 488 (881)
.....++... ..++...++...|+.+.|.||+++|||||..|| ++.|+++|+.|++++++++ +++++|++.+.
T Consensus 346 ~~~~~~~~~~--~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s----~~t~df~~~l~ 419 (601)
T TIGR02411 346 LGEDPEYTKL--VVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKS----LDTYQFKDALY 419 (601)
T ss_pred hcCCCCCCcc--cccCCCCChhhhccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCC----CCHHHHHHHHH
Confidence 0000111110 111222245678999999999999999999999 9999999999999999996 79999998776
Q ss_pred HhcCC--CccCHHhH-HHhhhcCCCccEEEEEE
Q 002783 489 KVGNL--ERPFLKEF-FPRWVGTCGCPVLRMGF 518 (881)
Q Consensus 489 ~~~~~--~~~~l~~f-~~~Wv~~~G~P~l~v~~ 518 (881)
+.... .+.+++.+ |++|++++|+|.+.+.+
T Consensus 420 ~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~ 452 (601)
T TIGR02411 420 EYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNF 452 (601)
T ss_pred HHhhhccccchhhhhhHHHHhcCCCCCCcCCCC
Confidence 54311 12457766 99999999999987654
No 7
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-63 Score=607.65 Aligned_cols=463 Identities=22% Similarity=0.315 Sum_probs=353.1
Q ss_pred EEEEEEE--eccCcEEEEEEEEEEEc--CC-cCeEEEeccCceeeEEEEcCeeeee--eeCCCCcccchhhhhccccCCC
Q 002783 24 QKLCLSI--DMEKHQIYGYTELEIAV--PD-IGIVGLHAENLGIESVLVDGEPTEF--EYYPHNHQNVENEKRWRSMVSS 96 (881)
Q Consensus 24 y~l~L~i--d~~~~~~~G~v~I~i~~--~~-~~~I~L~a~~l~I~~V~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (881)
|++.|++ ++++..|+|.++|++.. .+ ...|.||+++|+|.+|.|||.+... .+...
T Consensus 25 ~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~~~~~~~~~~----------------- 87 (859)
T COG0308 25 YDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKALTAWYRLDGD----------------- 87 (859)
T ss_pred cceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccccccccccCc-----------------
Confidence 5555554 44558999999999975 33 3349999999999999999986543 22211
Q ss_pred CCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhhhhhhcccCCCCCCccC--CCceEEEEEEEEecCCcceeeee
Q 002783 97 PSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPK--QNVKLVRIDYWVEKVEVGIHFDG 174 (881)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~--~~~~~~~i~y~~~~~~~G~~f~~ 174 (881)
.+.|....+... .+....++.+.+.+.+... ...|+++..+ .+ .
T Consensus 88 ----------------------~~~i~~~~~~~~--~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~------~~----~ 133 (859)
T COG0308 88 ----------------------ALTITVAPPIPE--RSERPFTLAITYEFTGPVSNDTLEGLYRSGY------GG----K 133 (859)
T ss_pred ----------------------cceeeecccccc--ccCCCccEEEEEEecccccCccccceeecCC------CC----C
Confidence 011110000000 0000011111122222222 1124443221 11 4
Q ss_pred ceEeccCccCCcceeEecCCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCceEEEEecCCCCcceeeEEEEee
Q 002783 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (881)
Q Consensus 175 ~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~y~iafaVG~ 254 (881)
.+++||||+.+||+||||+|+|+.|+||+++|+.++++++||||+++..... .+++++++|..++|||+|++|+++|+
T Consensus 134 ~~~~TQ~Ea~~aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~~~~~~~~--~~g~~~~~f~~~~~mptYL~al~~G~ 211 (859)
T COG0308 134 PYLITQCEAEGARRIFPCIDEPDVKATFTLTIRADKGPKLISNGNLIDGGTL--VDGRKIVKFEDTPPMPTYLFALVAGD 211 (859)
T ss_pred eeEEeecccCCCceeeecCCCCCCcceeEEEEEecCcceeeecCCccccccc--cCCcEEEEEcCCCCcchHhhheeeec
Confidence 6799999999999999999999999999999999999999999999876542 34689999999999999999999999
Q ss_pred ceEeecCC-----CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEECCCCcccccccccchhhcc
Q 002783 255 FEVLPDHH-----QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFS 329 (881)
Q Consensus 255 f~~~~~~~-----~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~~ 329 (881)
|+++++.. ..++.+|+.|+....++++++.+.++++|||++||.+||+++ ++|+||++..++|||| |++++.
T Consensus 212 ~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~--Gl~tf~ 288 (859)
T COG0308 212 LEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENW--GLVTFR 288 (859)
T ss_pred ceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCcccccc--ceeEEe
Confidence 99887765 578999999999999999999999999999999999999999 9999999999999999 678884
Q ss_pred -cccccCccc-chhhhh-hHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCchHhHHHHHhhcchh
Q 002783 330 -SQILYDEKV-IDQAID-TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVC 406 (881)
Q Consensus 330 -~~lL~~~~~-~~~~~~-~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~~~~~~~~~~~~~~~ 406 (881)
..+|.++.. .+..+. ...+|+||+|||||||+||++||+|+|||||||+|++..+...+.|....++..+...
T Consensus 289 ~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~---- 364 (859)
T COG0308 289 EKYLLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTL---- 364 (859)
T ss_pred eeEEeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHH----
Confidence 557877543 343332 3458999999999999999999999999999999999999999988332222222211
Q ss_pred hcccCCCcccCCCCccccC-----CCCccccccccchhhhHHHHHHHHHHhhChHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 002783 407 KADDSGATALSSSASCKDL-----YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (881)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~-----~~~~~~~~f~~i~Y~Kg~~VL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~ 481 (881)
....++..++.+..+++ .+.++...||.++|.||+.|+|||+..+|++.|+++|+.|+++|.+++ .+++
T Consensus 365 --~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~----~~~~ 438 (859)
T COG0308 365 --RTSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGN----ATTM 438 (859)
T ss_pred --hhhHHHhhccccccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCC----CCHH
Confidence 11112233333333333 246778899999999999999999999999999999999999999997 6899
Q ss_pred HHHHHHHHhcCCCccCHHhHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCccccCCCCCCCCCCCCcc
Q 002783 482 EFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (881)
Q Consensus 482 ~f~~~~~~~~~~~~~~l~~f~~~Wv~~~G~P~l~v~~~~n~k~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (881)
+|++.++.++ |.|+.++|++|+.++|+|++.|+.+++. .+.|+|+|+.... ......|
T Consensus 439 Dl~~a~~~~s---g~dl~~~~~~w~~q~G~P~l~v~~~~~~---~~~l~~~q~~~~~----------------~~~~~~~ 496 (859)
T COG0308 439 DLWKALEDAS---GKDLSAFFESWLSQAGYPVLTVSVRYDD---FFKLTQKQFTPPG----------------QEEKRPW 496 (859)
T ss_pred HHHHHHHHHh---CCcHHHHHHHHHhCCCCCceeeeeeccc---cEEEEEEEeccCC----------------CccCcee
Confidence 9999999987 5789999999999999999999998763 6678999876421 1224479
Q ss_pred ceeEEEEEeccCC
Q 002783 562 PGMMSIRVHELDG 574 (881)
Q Consensus 562 ~~pltvri~e~dg 574 (881)
++|+.+...+.+|
T Consensus 497 ~iPl~~~~~~~~~ 509 (859)
T COG0308 497 PIPLAIKLLDGGG 509 (859)
T ss_pred eeccEEEecCCCC
Confidence 9999999887765
No 8
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=4.8e-58 Score=521.38 Aligned_cols=372 Identities=23% Similarity=0.349 Sum_probs=280.5
Q ss_pred CCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcCeEEEeccCceeeEEEEcCeeee-------eeeCCCCcccchh
Q 002783 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE-------FEYYPHNHQNVEN 86 (881)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~-------~~~~~~~~~~~~~ 86 (881)
....+.|.||+|.|++|++...|+|.|+|++.+ .+++.|.||+.+++|.+|.++|.... +.+...
T Consensus 2 Lp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~~~~~~~~~~~~~------- 74 (390)
T PF01433_consen 2 LPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSSEYKSSPFEYDDE------- 74 (390)
T ss_dssp --TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSCTECCEEEEEECC-------
T ss_pred CCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccccccccceeeccc-------
Confidence 356799999999999999999999999999997 57999999999999999999987654 222211
Q ss_pred hhhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhhhhhhcccCCCCCCccCC-CceEEEEEEEEec
Q 002783 87 EKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEK 165 (881)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~i~y~~~~ 165 (881)
...|.|.++.+ +..+. .++|+ +.|+|.++. ..|++++.|....
T Consensus 75 ------------------------------~~~l~I~l~~~---l~~g~-~~~L~--I~y~g~~~~~~~G~~~~~y~~~~ 118 (390)
T PF01433_consen 75 ------------------------------NEKLTITLPKP---LPPGS-NYTLR--IEYSGKISDDSSGLYRSSYTDQT 118 (390)
T ss_dssp ------------------------------BTEEEEEEEEE---CSTTE-EEEEE--EEEEEECBSSSSEEEEEEEE-GT
T ss_pred ------------------------------cceeehhhhhh---cccCc-EEEEE--EEEeecccccccccccceeeccc
Confidence 12366655432 22221 14444 678887765 4689998887511
Q ss_pred CCcceeeeeceEeccCccCCcceeEecCCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCceEEEEecCCCCcc
Q 002783 166 VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245 (881)
Q Consensus 166 ~~~G~~f~~~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~~f~~t~p~s~ 245 (881)
.|. ..++++|++||.+||+||||+|+|++||+|+++|++|++++|+|||++.++... ++++++++|..++|||+
T Consensus 119 --~~~--~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~~~~~~--~~~~~~~~f~~t~p~~~ 192 (390)
T PF01433_consen 119 --NGN--TRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLEEEESN--DDGWKTTTFETTPPMPT 192 (390)
T ss_dssp --SSS--ETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEEEEEEE--TTTEEEEEEEEEEEEEG
T ss_pred --ccc--cCCceeecccccccceeeeeeccCCccceEEEeeeccccceeeccccccccccc--cccceeEeeecccccCc
Confidence 121 257899999999999999999999999999999999999999999999887754 35799999999999999
Q ss_pred eeeEEEEeeceEeecCCC--CcEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEECCCCccccccccc
Q 002783 246 KWITLAVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (881)
Q Consensus 246 y~iafaVG~f~~~~~~~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga 323 (881)
|++||+||+|+.++.... .++++|++|+..+.++++++.+.+++++|+++||.||||+|+++|++|++..++|+++
T Consensus 193 yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~-- 270 (390)
T PF01433_consen 193 YLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENW-- 270 (390)
T ss_dssp GG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--T--
T ss_pred hhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeEEEEecccccccccc--
Confidence 999999999999876553 5899999999999999999999999999999999999999999999998777889998
Q ss_pred chhhc-ccccccCcccchhh--hhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCchHhHHH-H
Q 002783 324 AMGIF-SSQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR-Y 399 (881)
Q Consensus 324 gl~~~-~~~lL~~~~~~~~~--~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~~~~~~~-~ 399 (881)
|++++ +..++++++..... .....+||||+|||||||+||++||+|+||+||||+|++.+++++.+|........ .
T Consensus 271 g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~ 350 (390)
T PF01433_consen 271 GLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILEKLFGEWQMMELFLV 350 (390)
T ss_dssp TEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHH
T ss_pred ccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHhHhhccCcccchhhhhh
Confidence 67777 56788887654432 23456899999999999999999999999999999999999999999954431111 1
Q ss_pred HhhcchhhcccC-CCcccCCCCccccC-CCCccccccccchhhhH
Q 002783 400 KANCAVCKADDS-GATALSSSASCKDL-YGTQCIGIFGKIRSCKS 442 (881)
Q Consensus 400 ~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~~~~~~~f~~i~Y~Kg 442 (881)
......+..|.. ...++. .++ .+.++...|+.+.|.||
T Consensus 351 ~~~~~~~~~d~~~~~~pl~-----~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 351 QEMQRALREDALPNSHPLS-----SEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHHHHHHHHHTSTTCCCSS-----SSSSSESCGGGGSSHHHHHHH
T ss_pred hhHHHHHHHhhcCCCcceE-----eCCCCCCChHHhcCccccCCC
Confidence 111111222221 111221 112 23556778999999998
No 9
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-50 Score=435.01 Aligned_cols=440 Identities=19% Similarity=0.262 Sum_probs=325.5
Q ss_pred CCCCCCCCCcCCCC-CC-CCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcCeEEEeccCceeeEEEEcCeeeeeeeC
Q 002783 1 MAKPRKPKNEETKV-EN-SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYY 77 (881)
Q Consensus 1 ~~~~~~~~~~~p~~-~~-~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~~~~~ 77 (881)
||-+| +|.+ +| ..+.+.|+.|++.+||+...++|+|.+++.+ .+...|.||.++++|.+|++||.+.+|...
T Consensus 1 m~~~~-----Dp~s~sn~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~~~~i~ 75 (613)
T KOG1047|consen 1 MAPRR-----DPSSASNYRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEPPFRIG 75 (613)
T ss_pred CCCCC-----CcccccChhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCCCCccC
Confidence 66666 5644 33 6789999999999999999999999999986 333459999999999999999988776644
Q ss_pred CCCcccchhhhhccccCCCCCchHHHHHHHHHHhhccCCCCceeEeccCCCCCchhhhhhhhcccCCCCCCccCCCceEE
Q 002783 78 PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLV 157 (881)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 157 (881)
.. +... +..-.+.+.. + ..+. .....+
T Consensus 76 ~~-~~~~------------------------------g~~~~~~l~~--~--~~~a------------------~~~~~l 102 (613)
T KOG1047|consen 76 FR-QPFL------------------------------GSGQKLVLPA--P--SSKA------------------GERLQL 102 (613)
T ss_pred cc-cCCC------------------------------CCceEEEecc--c--cccc------------------cCceEE
Confidence 21 1000 0000133311 1 1100 111234
Q ss_pred EEEEEEecCCcceee---------eeceEeccCccCCcceeEecCCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccC
Q 002783 158 RIDYWVEKVEVGIHF---------DGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKD 228 (881)
Q Consensus 158 ~i~y~~~~~~~G~~f---------~~~~~~T~~ep~~Ar~wFPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~ 228 (881)
.|.|.......|+++ +.+|++||||..+||..|||+|.|+.|.||+..|.+|.++++++++...++.. .
T Consensus 103 ~i~y~Ts~~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~l~a~mSai~~~~~~--~ 180 (613)
T KOG1047|consen 103 LIWYETSPSATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMGLTALMSAIPAGEKP--G 180 (613)
T ss_pred EEEEeccCCcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCcceeeeeccccccCC--C
Confidence 444543333344444 23789999999999999999999999999999999999999999998755543 3
Q ss_pred CCCceEEEEecCCCCcceeeEEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHH-HHHHHHHHHHHHhCCCCCCCCccE
Q 002783 229 DPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQ 307 (881)
Q Consensus 229 ~~~~~~~~f~~t~p~s~y~iafaVG~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~ 307 (881)
..++.+++|.+..|+|+|++||++|+.+..+. +..-++|+.|...+..+..+. .+.++|.--|+.+| ||+|..||+
T Consensus 181 ~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eI--gpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDl 257 (613)
T KOG1047|consen 181 SNGRAIFRFKQEVPIPSYLIAIAVGDLESREI--GPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGRYDL 257 (613)
T ss_pred CCCcceEEEEeccCchhhhHHHhhcccccccc--CCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-CcccccceE
Confidence 45688999999999999999999999876543 556889999999998888887 89999999999999 999999999
Q ss_pred EEECC-CCcccccccccchhhcccccccCcccchhhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHH
Q 002783 308 VFLAP-EMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIK 386 (881)
Q Consensus 308 V~vp~-~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~ 386 (881)
+++|+ +..++|+|. .|+.....||-..+. ...+|||||||-||||+||..+|.+.||||||++|++..++.
T Consensus 258 lvlPpSFP~gGMENP--cltF~TpTllaGDrs------l~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI~g 329 (613)
T KOG1047|consen 258 LVLPPSFPFGGMENP--CLTFVTPTLLAGDRS------LVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRIVG 329 (613)
T ss_pred EEecCCCCcccccCc--ceeeecchhhcCCcc------hhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhhhh
Confidence 99985 556788887 344446667765442 245799999999999999999999999999999999999999
Q ss_pred HHhCCchHhHHHHHhhcchhh-cccCCCcccCCCCccccCCCCccccccccchhhhHHHHHHHHHHhhC-hHHHHHHHHH
Q 002783 387 KFLGNNEARYRRYKANCAVCK-ADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQN 464 (881)
Q Consensus 387 ~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~VL~mLe~~lG-~e~F~~~L~~ 464 (881)
.++|.....++....+...-. .+..+. .........++.+.++...|+.+-|.||..+|+.||+.+| ++.|...||.
T Consensus 330 ~~~g~~~~~f~a~~gw~~L~~~~d~~g~-~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~Le~~lG~~~~Fd~FLr~ 408 (613)
T KOG1047|consen 330 RLYGEAYRQFEALIGWRELRPSMDLFGE-TSEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYLEQLLGDPTRFDPFLRA 408 (613)
T ss_pred hhcchhHHHHHHhcChhhhhhHHHhcCC-CcccchhhhhccCCChHHhhhcCchhhhhHHHHHHHHHhCChhhHHHHHHH
Confidence 999987654443222221100 011110 0000111223333455678999999999999999999999 5789999999
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHH-hcCCCccC-HHh-HHHhhhcCCCccEEEE
Q 002783 465 IISRAQGASPVRTLSTKEFRHFANK-VGNLERPF-LKE-FFPRWVGTCGCPVLRM 516 (881)
Q Consensus 465 yl~~~~~~~~~~~~st~~f~~~~~~-~~~~~~~~-l~~-f~~~Wv~~~G~P~l~v 516 (881)
|++++++++ +.+++|..+.-+ ..+....+ +.. -|+.|++++|.|-..-
T Consensus 409 Yv~kfa~ks----I~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p 459 (613)
T KOG1047|consen 409 YVHKFAFKS----ILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKP 459 (613)
T ss_pred HHHHhccce----ecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCC
Confidence 999999984 899999876644 33211122 233 4899999999997544
No 10
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=98.88 E-value=1.8e-09 Score=101.94 Aligned_cols=102 Identities=20% Similarity=0.322 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCchHhHHHHHhhcchhhcccCCCcccCCCCccccC
Q 002783 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDL 425 (881)
Q Consensus 346 ~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 425 (881)
..+++||++|+|++..+........|++||+|+|++...-. .. .... ...+... ...++ .++
T Consensus 26 ~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~~~------~~-~~~~---~~~~~~~--~~~~~------~~l 87 (128)
T PF13485_consen 26 DRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRIED------EF-DEDL---KQAIESG--SLPPL------EPL 87 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCccc------hh-HHHH---HHHHHcC--CCCCh------HHH
Confidence 46899999999999999877888899999999999833110 00 0110 0111110 01111 111
Q ss_pred CC-CccccccccchhhhHHHHHHHHHHhhChHHHHHHHHHH
Q 002783 426 YG-TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNI 465 (881)
Q Consensus 426 ~~-~~~~~~f~~i~Y~Kg~~VL~mLe~~lG~e~F~~~L~~y 465 (881)
.. ......+....|.+|.+++++|+...|++.|.+.|+.|
T Consensus 88 ~~~~~~~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 88 NSSFDFSWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred hccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 00123345568999999999999999999999999875
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=98.52 E-value=3.5e-06 Score=93.66 Aligned_cols=225 Identities=14% Similarity=0.134 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEECCCCcccccccccchhhc-ccccccCcccc-hhh-hhh-HHHHHHH
Q 002783 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVI-DQA-IDT-SIKLSFA 352 (881)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~-~~~-~~~-~~~iaHE 352 (881)
..+...+.++++++-=-+.|| +-||.+|.+++--. -..++||.-. ++.|.++.-.. ++. +.. ..+++||
T Consensus 182 d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s------~q~~GGlEH~~St~l~~~r~~~~~~~ky~~~l~llsHE 254 (558)
T COG3975 182 DKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLS------DQIYGGLEHRRSTALIYDRFGFTDQDKYQDLLGLLSHE 254 (558)
T ss_pred cHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEec------CCCCCCceeccccccccccccccchhHHHHHHHHHHHH
Confidence 444555666777777677888 68999987765321 1222366666 45566655332 221 222 5689999
Q ss_pred HHHhhhcccccCCC-C----------ChhHHHHHHHHHHHHHHHHHHh--CCchHhHHHHHhhcchhhcccCCCcccCCC
Q 002783 353 LARQWFGVYITPEL-P----------NDEWLLDGLAGFLTDSFIKKFL--GNNEARYRRYKANCAVCKADDSGATALSSS 419 (881)
Q Consensus 353 lAHQWfG~lVt~~~-w----------~d~WL~EGfA~Y~~~~~~~~~~--G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (881)
..|-|-+-.+-|.. | .-+|+.|||+.|...++....- -.++|.--.-+....+......-..++..
T Consensus 255 yfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~~la~tl~~~~~~~gRl~~~laE- 333 (558)
T COG3975 255 YFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLNYLAKTLARYLNTPGRLRQSLAE- 333 (558)
T ss_pred HHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCceecccccc-
Confidence 99999887776654 2 4589999999999887754321 11112100111122221111000111111
Q ss_pred Ccccc----CCCCccccccccch--hhhHHHHHHHHHHhh-----ChHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 002783 420 ASCKD----LYGTQCIGIFGKIR--SCKSVAILQMLEKQM-----GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFAN 488 (881)
Q Consensus 420 ~~~~~----~~~~~~~~~f~~i~--Y~Kg~~VL~mLe~~l-----G~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~~ 488 (881)
++.+ .+..+.. .-..+. |.||++|--+|+-.| |+.++..+|+.+...+... ++..+.++++.+++
T Consensus 334 -sS~~awik~yr~d~n-s~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~--~~~~t~e~v~av~~ 409 (558)
T COG3975 334 -SSFDAWIKYYRPDEN-SPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRA--ERGYTPEDVQAVLE 409 (558)
T ss_pred -cccchhHHhhccccc-ccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcC--ccCCCHHHHHHHHH
Confidence 0100 0101000 001122 899999988888877 5678999999999887763 34679999999999
Q ss_pred HhcCCCccCHHhHHHhhhcCCCccEEEE
Q 002783 489 KVGNLERPFLKEFFPRWVGTCGCPVLRM 516 (881)
Q Consensus 489 ~~~~~~~~~l~~f~~~Wv~~~G~P~l~v 516 (881)
.+. |.++.+||++.+++.--|.+.-
T Consensus 410 ~~t---g~dl~~f~~~~i~~~~~~~l~~ 434 (558)
T COG3975 410 NVT---GLDLATFFDEYIEGTEPPPLNP 434 (558)
T ss_pred hhc---cccHHHHHHHHhhcCCCCChhh
Confidence 987 4689999999999998777654
No 12
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=96.67 E-value=0.028 Score=62.16 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=101.3
Q ss_pred EEEecCCCceeeeecccCchh-HHHHHHhhcC-ChHHHH---HHHHHHHcCCCCchhHHhHHHhhh-ccCcchhHHHHHH
Q 002783 638 WIRADPEMEYLAEIHFNQPVQ-MWINQLEKDG-DVVAQA---QAIAALEALPHLSFNVVNTLNNFL-SDSKAFWRVRIEA 711 (881)
Q Consensus 638 WIr~D~~~~~l~~v~~~q~~~-m~~~qL~~d~-dv~aq~---eai~~L~~~~~~~~~~~~~L~~~l-~d~~~f~~vR~~A 711 (881)
||.+|++..++|||+++...+ -.+.+|+.++ +.+.+. +++.+|++.+..+......|...+ .+|.. |.|+..+
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~-~~vw~~~ 79 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETD-YVVWSTA 79 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--S-HHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCc-hHHHHHH
Confidence 999999999999996644322 3377888776 666543 777888888777777677788888 77764 8999999
Q ss_pred HHHHHhhccc-c--ccccc--h-----HHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHH
Q 002783 712 AYALANTASE-E--TDWAG--L-----LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPRE 781 (881)
Q Consensus 712 a~aL~~~~~~-~--~~~~g--~-----~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~~~~ai~~a~~~~r~~~~~~p~~ 781 (881)
...|..+.+. . ..... + ..+...+++.-.++ .++ .+...-.++..|...+| .+..|-.+
T Consensus 80 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-----~~~--~~~~~~~lr~~~~~~a~----~~~~~~~~ 148 (324)
T PF11838_consen 80 LSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDP-----RPG--EDHNDRLLRALLLSLAC----GDPECVAE 148 (324)
T ss_dssp HHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSS-----S----SCHHHHHHHHHHHHHHH----T-HHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCC-----ccc--ccHHHHHHHHHHHHHhc----cchhHHHH
Confidence 9998877632 1 11111 1 12233344332222 222 67778888888777777 56778899
Q ss_pred HHHHHHHHhhccCCCCCCCchHHHHHHHHHHhh
Q 002783 782 AVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVG 814 (881)
Q Consensus 782 v~~~l~~~l~~ndns~n~y~D~~y~a~li~al~ 814 (881)
+.+.+..++.-+++.. .--|.-.+..++.+..
T Consensus 149 a~~~~~~~~~~~~~~~-~~i~~dlr~~v~~~~~ 180 (324)
T PF11838_consen 149 ARELFKAWLDGNDSPE-SSIPPDLRWAVYCAGV 180 (324)
T ss_dssp HHHHHHHHHHTTT-TT-STS-HHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccc-cccchHHHHHHHHHHH
Confidence 9999999888444422 2233335555544443
No 13
>PRK09687 putative lyase; Provisional
Probab=96.43 E-value=0.091 Score=56.76 Aligned_cols=118 Identities=18% Similarity=0.085 Sum_probs=68.4
Q ss_pred HHhhcCChHHHHHHHHHHHcCCCC----chhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhc
Q 002783 663 QLEKDGDVVAQAQAIAALEALPHL----SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 738 (881)
Q Consensus 663 qL~~d~dv~aq~eai~~L~~~~~~----~~~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~ 738 (881)
-+.+|+|..-|..|+.+|+..... ...+...|...+.|+ .++||..|+.+|+++.+++ .+..|+++.+.
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~~~----ai~~L~~~L~d- 170 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK--STNVRFAVAFALSVINDEA----AIPLLINLLKD- 170 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC--CHHHHHHHHHHHhccCCHH----HHHHHHHHhcC-
Confidence 345677777777777777765211 122344555666665 4677777777777666543 25555555442
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhcc
Q 002783 739 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (881)
Q Consensus 739 ~~~~~~~~p~~n~f~~~~~y~~~~ai~~a~~~~r~~~~~~p~~v~~~l~~~l~~ndns~n~y~D~~y~a~li~al~~~ 816 (881)
+ ++.|+.....||+.+ +...+++...|+.+|. |. |...+...+.+||.+
T Consensus 171 ---~--------------~~~VR~~A~~aLg~~----~~~~~~~~~~L~~~L~--D~------~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 171 ---P--------------NGDVRNWAAFALNSN----KYDNPDIREAFVAMLQ--DK------NEEIRIEAIIGLALR 219 (280)
T ss_pred ---C--------------CHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhc--CC------ChHHHHHHHHHHHcc
Confidence 1 123667767777766 2224466677777772 11 344677777777765
No 14
>PRK09687 putative lyase; Provisional
Probab=95.47 E-value=0.17 Score=54.64 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=62.8
Q ss_pred hhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCCCCCC
Q 002783 665 EKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENI 744 (881)
Q Consensus 665 ~~d~dv~aq~eai~~L~~~~~~~~~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~ 744 (881)
..|.|..-|..|+.+|++.+. ..+...|...|.|+. +.||..|+.+|+++.... ......|++.... +
T Consensus 137 ~~D~~~~VR~~a~~aLg~~~~--~~ai~~L~~~L~d~~--~~VR~~A~~aLg~~~~~~--~~~~~~L~~~L~D----~-- 204 (280)
T PRK09687 137 AFDKSTNVRFAVAFALSVIND--EAAIPLLINLLKDPN--GDVRNWAAFALNSNKYDN--PDIREAFVAMLQD----K-- 204 (280)
T ss_pred hhCCCHHHHHHHHHHHhccCC--HHHHHHHHHHhcCCC--HHHHHHHHHHHhcCCCCC--HHHHHHHHHHhcC----C--
Confidence 456666677777777766543 245666777777654 357777777777663211 1123445544422 1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhc
Q 002783 745 GLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGE 815 (881)
Q Consensus 745 ~~p~~n~f~~~~~y~~~~ai~~a~~~~r~~~~~~p~~v~~~l~~~l~~ndns~n~y~D~~y~a~li~al~~ 815 (881)
+..|+++...||+.+++ +.+...|++.|+.++ +...+++|||+
T Consensus 205 ------------~~~VR~~A~~aLg~~~~------~~av~~Li~~L~~~~----------~~~~a~~ALg~ 247 (280)
T PRK09687 205 ------------NEEIRIEAIIGLALRKD------KRVLSVLIKELKKGT----------VGDLIIEAAGE 247 (280)
T ss_pred ------------ChHHHHHHHHHHHccCC------hhHHHHHHHHHcCCc----------hHHHHHHHHHh
Confidence 11256666677766642 356777777776322 23456666665
No 15
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.58 E-value=0.15 Score=44.18 Aligned_cols=71 Identities=28% Similarity=0.295 Sum_probs=56.9
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHh
Q 002783 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (881)
Q Consensus 659 m~~~qL~~d~dv~aq~eai~~L~~~~~~~~~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~ 737 (881)
..+..|..|+|..-|..|+..|++.+ +..+...|.+.+.|+ .+.||.+|+.+|+++.+++ ....|.+.+++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~~~----~~~~L~~~l~~ 73 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG--DPEAIPALIELLKDE--DPMVRRAAARALGRIGDPE----AIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT--HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCHHHH----THHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHH----HHHHHHHHHcC
Confidence 35677888999999999999999864 446778899999775 4899999999999997544 46677776653
No 16
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=94.52 E-value=0.21 Score=55.16 Aligned_cols=138 Identities=19% Similarity=0.217 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhh--hcccccCC--CCChhHHHHHHHHHHHHHHHHHHh-CCc---hHhHHHHHhhcchhhcccCCCcccC
Q 002783 346 SIKLSFALARQW--FGVYITPE--LPNDEWLLDGLAGFLTDSFIKKFL-GNN---EARYRRYKANCAVCKADDSGATALS 417 (881)
Q Consensus 346 ~~~iaHElAHQW--fG~lVt~~--~w~d~WL~EGfA~Y~~~~~~~~~~-G~~---~~~~~~~~~~~~~~~~~~~~~~~l~ 417 (881)
..+||||+-|+- .-+.|... .-.|+|||||+|.-+++++-.+.. |-+ ..|++.|.. ...... .
T Consensus 140 ~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~-------~~~~~~--~ 210 (366)
T PF10460_consen 140 YSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYNN-------YTSGNY--N 210 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHhh-------ccccCC--C
Confidence 447999999984 32334333 346999999999999988765542 111 112332221 000000 0
Q ss_pred CCCccccCCCCccccccccchhhhHHHHHHHHHHhhChHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCCccC
Q 002783 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPF 497 (881)
Q Consensus 418 ~~~~~~~~~~~~~~~~f~~i~Y~Kg~~VL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~~~~~~~~~~~ 497 (881)
+.. ..... . .-.-..|..+.+++.-|.+..|.+.+++.|. +.... -+.+-+..+.+.++ .+..
T Consensus 211 ~~l--~~w~~--~--g~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~----~~~~t-----ds~avl~aa~~~~~--~~~s 273 (366)
T PF10460_consen 211 CSL--TAWSS--F--GDSLASYSSSYSFGAYLYRQYGGDFYKKLLT----NSSST-----DSEAVLDAAIKQAG--PGNS 273 (366)
T ss_pred cce--eecCC--C--ccccccchhHHHHHHHHHHHcChHHHHHHHh----cCCCC-----cHHHHHHHHHHhhc--CCCC
Confidence 000 00100 0 0012458899999999999999888766554 22111 12222444444443 2457
Q ss_pred HHhHHHhhhcCC
Q 002783 498 LKEFFPRWVGTC 509 (881)
Q Consensus 498 l~~f~~~Wv~~~ 509 (881)
+.++|.+|.---
T Consensus 274 f~~~l~~w~~A~ 285 (366)
T PF10460_consen 274 FGELLRRWGVAL 285 (366)
T ss_pred HHHHHHHHHHHH
Confidence 999999998766
No 17
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=94.43 E-value=0.028 Score=52.60 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhcccccCCCC--ChhHHHHHHHHHHHHHHH
Q 002783 348 KLSFALARQWFGVYITPELP--NDEWLLDGLAGFLTDSFI 385 (881)
Q Consensus 348 ~iaHElAHQWfG~lVt~~~w--~d~WL~EGfA~Y~~~~~~ 385 (881)
+++||.+||=.-|.=-...- .=.|+.||||+|++..-+
T Consensus 4 T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 4 TIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred HHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 68999999986654222211 127999999999976544
No 18
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=94.15 E-value=0.89 Score=46.49 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCchHhHHHHHhhcchhhcccCCCcccCCCCcc
Q 002783 343 IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASC 422 (881)
Q Consensus 343 ~~~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (881)
.+...+|.||++|-|=.+--.. .--||.||+|.|+-.. .|- +.+.-..+
T Consensus 94 ~Ei~Gvl~HE~~H~~Q~~~~~~---~P~~liEGIADyVRl~-----aG~---------------------~~~~w~~p-- 142 (205)
T PF04450_consen 94 DEIIGVLYHEMVHCWQWDGRGT---APGGLIEGIADYVRLK-----AGY---------------------APPHWKRP-- 142 (205)
T ss_pred HHHHHHHHHHHHHHhhcCCCCC---CChhheecHHHHHHHH-----cCC---------------------CCccccCC--
Confidence 3456689999999775554222 2349999999998321 110 00000000
Q ss_pred ccCCCCccccccccchhhhHHHHHHHHHH-hhChHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCCccCHHhH
Q 002783 423 KDLYGTQCIGIFGKIRSCKSVAILQMLEK-QMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEF 501 (881)
Q Consensus 423 ~~~~~~~~~~~f~~i~Y~Kg~~VL~mLe~-~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~~~~~~~~~~~l~~f 501 (881)
... ..++ -.|.-.+..|.-||. +.|+ .|-+-|++=+.+..+. +...|. .+. |++++++
T Consensus 143 --~~~----~~wd-~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y~------~~~~~~----~l~---G~~v~~L 201 (205)
T PF04450_consen 143 --GGG----DSWD-DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKYS------SDDFWK----ELL---GKPVDEL 201 (205)
T ss_pred --CCC----CCcc-cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCCC------cHhHHH----HHH---CcCHHHH
Confidence 000 0111 247889999999998 6654 5666666666555441 222333 333 4568887
Q ss_pred HHh
Q 002783 502 FPR 504 (881)
Q Consensus 502 ~~~ 504 (881)
++.
T Consensus 202 W~e 204 (205)
T PF04450_consen 202 WAE 204 (205)
T ss_pred Hhh
Confidence 764
No 19
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=93.64 E-value=0.028 Score=52.11 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhhcccccCC-----------CCChhHHHHHHHHHHHHHHHHHH
Q 002783 346 SIKLSFALARQWFGVYITPE-----------LPNDEWLLDGLAGFLTDSFIKKF 388 (881)
Q Consensus 346 ~~~iaHElAHQWfG~lVt~~-----------~w~d~WL~EGfA~Y~~~~~~~~~ 388 (881)
..++|||..|.|-+-.+.|. --+.+|+-||+++|++.+++.+.
T Consensus 5 l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 5 LGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 34799999999997665554 44568999999999999887553
No 20
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.92 E-value=0.98 Score=57.21 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=83.5
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcC
Q 002783 660 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRR 739 (881)
Q Consensus 660 ~~~qL~~d~dv~aq~eai~~L~~~~~~~~~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~ 739 (881)
.+..+..|.|..-|..|+.+|.............|.+.+.|+. .-||..|+.+|+++..+.. ....|+.+.+.
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d--~~VR~aA~~aLg~~g~~~~---~~~~l~~aL~d-- 818 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPD--PLVRAAALAALAELGCPPD---DVAAATAALRA-- 818 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCC--HHHHHHHHHHHHhcCCcch---hHHHHHHHhcC--
Confidence 3556678889888999998888765433223456778888865 8899999999998876432 11234444432
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccc
Q 002783 740 FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFG 819 (881)
Q Consensus 740 ~~~~~~~p~~n~f~~~~~y~~~~ai~~a~~~~r~~~~~~p~~v~~~l~~~l~~ndns~n~y~D~~y~a~li~al~~~~~~ 819 (881)
+ +..|+.+...||+.+. ++++...|+.+|+ | .|...+.+.+.||+.+..+
T Consensus 819 --~--------------d~~VR~~Aa~aL~~l~------~~~a~~~L~~~L~--D------~~~~VR~~A~~aL~~~~~~ 868 (897)
T PRK13800 819 --S--------------AWQVRQGAARALAGAA------ADVAVPALVEALT--D------PHLDVRKAAVLALTRWPGD 868 (897)
T ss_pred --C--------------ChHHHHHHHHHHHhcc------ccchHHHHHHHhc--C------CCHHHHHHHHHHHhccCCC
Confidence 1 1348888888887762 4567788888885 1 1335788888888887544
Q ss_pred c
Q 002783 820 Q 820 (881)
Q Consensus 820 ~ 820 (881)
.
T Consensus 869 ~ 869 (897)
T PRK13800 869 P 869 (897)
T ss_pred H
Confidence 3
No 21
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.18 E-value=2.2 Score=36.72 Aligned_cols=87 Identities=28% Similarity=0.346 Sum_probs=61.1
Q ss_pred hHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhc
Q 002783 692 NTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV 771 (881)
Q Consensus 692 ~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~~~~ai~~a~~~~ 771 (881)
..|.+.|.++ ..+.||..|+.+|+++..++. ++.|++.++ +++ ..|+.+...||+.+
T Consensus 2 ~~L~~~l~~~-~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~----d~~--------------~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQND-PDPQVRAEAARALGELGDPEA----IPALIELLK----DED--------------PMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHTS-SSHHHHHHHHHHHHCCTHHHH----HHHHHHHHT----SSS--------------HHHHHHHHHHHHCC
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHcCCHhH----HHHHHHHHc----CCC--------------HHHHHHHHHHHHHh
Confidence 3566777443 368999999999997765532 556666553 221 24899999999998
Q ss_pred cccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhh
Q 002783 772 RAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVG 814 (881)
Q Consensus 772 r~~~~~~p~~v~~~l~~~l~~ndns~n~y~D~~y~a~li~al~ 814 (881)
. .+++...|.++++.. +|...+.+.+.|||
T Consensus 59 ~------~~~~~~~L~~~l~~~-------~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 G------DPEAIPALIKLLQDD-------DDEVVREAAAEALG 88 (88)
T ss_dssp H------HHHTHHHHHHHHTC--------SSHHHHHHHHHHHH
T ss_pred C------CHHHHHHHHHHHcCC-------CcHHHHHHHHhhcC
Confidence 4 477899999998832 23456788888886
No 22
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=86.54 E-value=11 Score=42.90 Aligned_cols=167 Identities=14% Similarity=0.024 Sum_probs=107.4
Q ss_pred EecCCCceeeeecccCchhHHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhc
Q 002783 640 RADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (881)
Q Consensus 640 r~D~~~~~l~~v~~~q~~~m~~~qL~~d~dv~aq~eai~~L~~~~~~~~~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~ 719 (881)
|+++...+|...= ..-....+..|..|.+..-...|+.+|...... .++..|.+.|.|.. -+||.+||.+|+++.
T Consensus 40 RL~AhLdgL~~~G-~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~--~~~~~L~~~L~d~~--~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 40 RLLAHVDGLVLAG-KAATELLVSALAEADEPGRVACAALALLAQEDA--LDLRSVLAVLQAGP--EGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHHHHHHhh-HhHHHHHHHHHhhCCChhHHHHHHHHHhccCCh--HHHHHHHHHhcCCC--HHHHHHHHHHHhcCC
Confidence 4555555555542 112245578887777766677788888764322 34788999998876 479999999999887
Q ss_pred cccccccchHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhccCCCCCC
Q 002783 720 SEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNP 799 (881)
Q Consensus 720 ~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~~~~ai~~a~~~~r~~~~~~p~~v~~~l~~~l~~ndns~n~ 799 (881)
.+.. ...|+...+.. -| +++.++..|++..+ .+ ....|+.+|+
T Consensus 115 ~~~a----~~~L~~~L~~~-------~p-----------~vR~aal~al~~r~-~~------~~~~L~~~L~-------- 157 (410)
T TIGR02270 115 GRQA----EPWLEPLLAAS-------EP-----------PGRAIGLAALGAHR-HD------PGPALEAALT-------- 157 (410)
T ss_pred chHH----HHHHHHHhcCC-------Ch-----------HHHHHHHHHHHhhc-cC------hHHHHHHHhc--------
Confidence 6643 34566666531 12 47888887776632 21 2346777776
Q ss_pred CchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHH
Q 002783 800 YSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (881)
Q Consensus 800 y~D~~y~a~li~al~~~~~~~~~~~~~~~~~~~i~r~~~~d~~~psy~~~vt~~~l~~~~~~~ 862 (881)
=.|.+.+++.+.+||.+.... .+..|... ..+.+..|-.+++.++..++
T Consensus 158 d~d~~Vra~A~raLG~l~~~~--------a~~~L~~a------l~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 158 HEDALVRAAALRALGELPRRL--------SESTLRLY------LRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred CCCHHHHHHHHHHHHhhcccc--------chHHHHHH------HcCCCHHHHHHHHHHHHHcC
Confidence 235567899999999875421 11222222 56777888888887776654
No 23
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.79 E-value=2.5 Score=50.23 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=93.6
Q ss_pred CCceeeeecccCchh-HHHHHHhhcCChHHHHHHHHHHHcC----CC-------CchhHHhHHHhhhccCcchhHHHHHH
Q 002783 644 EMEYLAEIHFNQPVQ-MWINQLEKDGDVVAQAQAIAALEAL----PH-------LSFNVVNTLNNFLSDSKAFWRVRIEA 711 (881)
Q Consensus 644 ~~~~l~~v~~~q~~~-m~~~qL~~d~dv~aq~eai~~L~~~----~~-------~~~~~~~~L~~~l~d~~~f~~vR~~A 711 (881)
=.+|++.+-+..++. ...-+.-...|..-|.-||..|... |. .++..++-|...|.|.|. -||-+|
T Consensus 109 ~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE--~IRNe~ 186 (970)
T KOG0946|consen 109 LGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE--PIRNEA 186 (970)
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh--hhchhH
Confidence 356788776666664 3344444556777777777655422 10 111234457777788763 788888
Q ss_pred HHHHHhhccccccccchHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccC----CCChHHHHHHHH
Q 002783 712 AYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD----NKSPREAVEFVL 787 (881)
Q Consensus 712 a~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~~~~ai~~a~~~~r~~~----~~~p~~v~~~l~ 787 (881)
..-|......-+...-+-+.-.+|-.+ ++.|+.+. |..-.++.-+|.
T Consensus 187 iLlL~eL~k~n~~IQKlVAFENaFerL-----------------------------fsIIeeEGg~dGgIVveDCL~ll~ 237 (970)
T KOG0946|consen 187 ILLLSELVKDNSSIQKLVAFENAFERL-----------------------------FSIIEEEGGLDGGIVVEDCLILLN 237 (970)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHH-----------------------------HHHHHhcCCCCCcchHHHHHHHHH
Confidence 888877665433322333444444443 35555543 467889999999
Q ss_pred HHhhccCCCCCCCchHHHHHHHHHHhhccc
Q 002783 788 QLLKYNDNNGNPYSDVFWLAALVQSVGELE 817 (881)
Q Consensus 788 ~~l~~ndns~n~y~D~~y~a~li~al~~~~ 817 (881)
+|||+|--..|-|--+-||..|.+-|..-.
T Consensus 238 NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~ 267 (970)
T KOG0946|consen 238 NLLKNNISNQNFFREGSYIPRLLKLLSVFE 267 (970)
T ss_pred HHHhhCcchhhHHhccccHHHHHhhcCccc
Confidence 999999999999999999999988776433
No 24
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=85.29 E-value=8.1 Score=49.08 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=84.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhc
Q 002783 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 738 (881)
Q Consensus 659 m~~~qL~~d~dv~aq~eai~~L~~~~~~~~~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~ 738 (881)
.++. +..|.|..-|.+|+.+|..... ...|...+.|+. ..||.+||.+|+.....+. ..+..|.++.+.
T Consensus 718 ~l~~-~L~D~d~~VR~~Av~aL~~~~~-----~~~l~~~l~D~~--~~VR~~aa~aL~~~~~~~~--~~~~~L~~ll~D- 786 (897)
T PRK13800 718 LFAA-ALGDPDHRVRIEAVRALVSVDD-----VESVAGAATDEN--REVRIAVAKGLATLGAGGA--PAGDAVRALTGD- 786 (897)
T ss_pred HHHH-HhcCCCHHHHHHHHHHHhcccC-----cHHHHHHhcCCC--HHHHHHHHHHHHHhccccc--hhHHHHHHHhcC-
Confidence 3444 4479999999999999997643 245777888875 7999999999999876543 224556655542
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccc
Q 002783 739 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELE 817 (881)
Q Consensus 739 ~~~~~~~~p~~n~f~~~~~y~~~~ai~~a~~~~r~~~~~~p~~v~~~l~~~l~~ndns~n~y~D~~y~a~li~al~~~~ 817 (881)
++ ..|+.+...+|+.+.+ +..+...|+..|+-. |...+.+.++||+.+.
T Consensus 787 ---~d--------------~~VR~aA~~aLg~~g~-----~~~~~~~l~~aL~d~--------d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 787 ---PD--------------PLVRAAALAALAELGC-----PPDDVAAATAALRAS--------AWQVRQGAARALAGAA 835 (897)
T ss_pred ---CC--------------HHHHHHHHHHHHhcCC-----cchhHHHHHHHhcCC--------ChHHHHHHHHHHHhcc
Confidence 21 3588999999988842 345556677777622 4568999999999763
No 25
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=85.23 E-value=25 Score=38.88 Aligned_cols=128 Identities=28% Similarity=0.278 Sum_probs=87.9
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHh
Q 002783 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (881)
Q Consensus 658 ~m~~~qL~~d~dv~aq~eai~~L~~~~~~~~~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~ 737 (881)
......| .++|..-+..|+..|...+ +..++..|...+.|+. +.||-.|+.+|++...++. ...|++.+.+
T Consensus 46 ~~~~~~l-~~~~~~vr~~aa~~l~~~~--~~~av~~l~~~l~d~~--~~vr~~a~~aLg~~~~~~a----~~~li~~l~~ 116 (335)
T COG1413 46 DELLKLL-EDEDLLVRLSAAVALGELG--SEEAVPLLRELLSDED--PRVRDAAADALGELGDPEA----VPPLVELLEN 116 (335)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHhhhc--hHHHHHHHHHHhcCCC--HHHHHHHHHHHHccCChhH----HHHHHHHHHc
Confidence 4445555 5669999999999998865 3456778999999987 4999999999999987754 6778877774
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhccCCCC----CCCchHHHHHHHHHHh
Q 002783 738 RRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNG----NPYSDVFWLAALVQSV 813 (881)
Q Consensus 738 ~~~~~~~~~p~~n~f~~~~~y~~~~ai~~a~~~~r~~~~~~p~~v~~~l~~~l~~ndns~----n~y~D~~y~a~li~al 813 (881)
++ +++++.+...||+.+++.+. ..=|+++++-++... ...-+..-+.+.+.+|
T Consensus 117 ---d~--------------~~~vR~~aa~aL~~~~~~~a------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l 173 (335)
T COG1413 117 ---DE--------------NEGVRAAAARALGKLGDERA------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEAL 173 (335)
T ss_pred ---CC--------------cHhHHHHHHHHHHhcCchhh------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHH
Confidence 22 24688888999999987654 444555554332111 0001113577778888
Q ss_pred hccc
Q 002783 814 GELE 817 (881)
Q Consensus 814 ~~~~ 817 (881)
+...
T Consensus 174 ~~~~ 177 (335)
T COG1413 174 GELG 177 (335)
T ss_pred HHcC
Confidence 8653
No 26
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=75.71 E-value=3.6 Score=27.17 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhccccccccchHHHHHHHH
Q 002783 707 VRIEAAYALANTASEETDWAGLLHLVKFYK 736 (881)
Q Consensus 707 vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (881)
||.+||.+|+++..++. ++.|+++.+
T Consensus 1 VR~~Aa~aLg~igd~~a----i~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRA----IPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHH----HHHHHHHhc
Confidence 79999999999987653 777777654
No 27
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=75.05 E-value=3 Score=28.14 Aligned_cols=27 Identities=41% Similarity=0.421 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhhccccccccchHHHHHHH
Q 002783 705 WRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (881)
Q Consensus 705 ~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f 735 (881)
|.||.+||.+|+++..++. ...|+++.
T Consensus 1 ~~vR~~aa~aLg~~~~~~a----~~~L~~~l 27 (30)
T smart00567 1 PLVRHEAAFALGQLGDEEA----VPALIKAL 27 (30)
T ss_pred CHHHHHHHHHHHHcCCHhH----HHHHHHHh
Confidence 5789999999998876543 55565554
No 28
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=74.74 E-value=11 Score=38.32 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhhhccccc----CCCCChhHHHHHHHHHHHHHHH
Q 002783 345 TSIKLSFALARQWFGVYIT----PELPNDEWLLDGLAGFLTDSFI 385 (881)
Q Consensus 345 ~~~~iaHElAHQWfG~lVt----~~~w~d~WL~EGfA~Y~~~~~~ 385 (881)
...++|||+.|-+--..+. ...--|..+.||+|.+++....
T Consensus 65 l~~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~ 109 (195)
T PF10026_consen 65 LPALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELY 109 (195)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHc
Confidence 3458999999996433332 1223367899999999876543
No 29
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=73.67 E-value=5.3 Score=27.24 Aligned_cols=25 Identities=36% Similarity=0.313 Sum_probs=19.6
Q ss_pred HHHhhhccCcchhHHHHHHHHHHHhhc
Q 002783 693 TLNNFLSDSKAFWRVRIEAAYALANTA 719 (881)
Q Consensus 693 ~L~~~l~d~~~f~~vR~~Aa~aL~~~~ 719 (881)
.|...+.|+. +.||..|+.+|+.+.
T Consensus 4 ~l~~~l~D~~--~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 4 ILLQLLNDPS--PEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHT-SS--HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC--HHHHHHHHHHHHHHH
Confidence 4566777864 999999999999875
No 30
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=69.02 E-value=6.3 Score=43.12 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHH
Q 002783 345 TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (881)
Q Consensus 345 ~~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~ 388 (881)
...+|-||||||=+.. -+|.=+||+||++.+..-+++.
T Consensus 165 LA~LIfHELaHq~~Yv------~~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 165 LARLIFHELAHQTLYV------KGDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHhhceeec------CCCchhhHHHHHHHHHHHHHHH
Confidence 4568999999994322 2577899999999987655544
No 31
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=68.51 E-value=9 Score=40.21 Aligned_cols=53 Identities=25% Similarity=0.206 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc
Q 002783 669 DVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET 723 (881)
Q Consensus 669 dv~aq~eai~~L~~~~~~~~~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~ 723 (881)
.-.-|.|+..-|.+..+ ..++-.|.+.|.|+..---||.|||.||+.+++++.
T Consensus 200 SalfrhEvAfVfGQl~s--~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 200 SALFRHEVAFVFGQLQS--PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred hHHHHHHHHHHHhhccc--hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 56668888888887643 345567888999987778999999999999999875
No 32
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=66.20 E-value=82 Score=35.41 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=31.9
Q ss_pred EEecCCCceeeeecccCchhHHHHHHhhcCChHHHHHHHHHHHc
Q 002783 639 IRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (881)
Q Consensus 639 Ir~D~~~~~l~~v~~~q~~~m~~~qL~~d~dv~aq~eai~~L~~ 682 (881)
.-+.-+|.=--++++++++..+.-++++|.|-..|-||.+.|..
T Consensus 69 pSllRgFSAPV~l~~~~s~~eL~~L~~~D~D~FnRWdA~Q~L~~ 112 (367)
T PF11940_consen 69 PSLLRGFSAPVKLEYDYSDEELAFLAAHDSDPFNRWDAAQTLAT 112 (367)
T ss_dssp EEESTTG-SSSEEE----HHHHHHHHHH-SSHHHHHHHHHHHHH
T ss_pred eehhcCcccceEecCCCCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 44556777777888899999999999999999999999987764
No 33
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=64.80 E-value=7.2 Score=40.44 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHH
Q 002783 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKK 387 (881)
Q Consensus 346 ~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~ 387 (881)
..+|-||||||=|... +|.=+||+||++.+..-+++
T Consensus 198 A~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~ 233 (376)
T COG4324 198 ASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRK 233 (376)
T ss_pred HHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHH
Confidence 4579999999976443 57789999999998655544
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=64.35 E-value=40 Score=39.74 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=72.1
Q ss_pred cCChHHHHHHHHHHHcCCCCc--hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCCCCCC
Q 002783 667 DGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENI 744 (881)
Q Consensus 667 d~dv~aq~eai~~L~~~~~~~--~~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~ 744 (881)
+++-.-|.-|++.|+...... ..+...+.+.+.|+. .-||..|+.+|.++.....+..... ++....+...+++
T Consensus 90 ~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~--~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~- 165 (526)
T PF01602_consen 90 SPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPS--PYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKD- 165 (526)
T ss_dssp SSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSS-
T ss_pred CCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCc-
Confidence 577788899999999764332 123344777787765 5999999999999876543332111 3333333322221
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhc-cccCC--CChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccc
Q 002783 745 GLPRPNDFRDFSEYFVLEAIPHAVAMV-RAADN--KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELE 817 (881)
Q Consensus 745 ~~p~~n~f~~~~~y~~~~ai~~a~~~~-r~~~~--~~p~~v~~~l~~~l~~ndns~n~y~D~~y~a~li~al~~~~ 817 (881)
..|+.+-..++..+ .+.+. ..-+...+.|.+++ .-.|.|-...+++.|....
T Consensus 166 -------------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l--------~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 166 -------------PSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLL--------SDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp -------------HHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHH--------TCCSHHHHHHHHHHHTTST
T ss_pred -------------chhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcc--------cccchHHHHHHHHHHHhcc
Confidence 23666666777777 22211 11223334444444 3445666777777777643
No 35
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=63.77 E-value=74 Score=35.06 Aligned_cols=56 Identities=32% Similarity=0.289 Sum_probs=44.1
Q ss_pred HhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhc-cCcchhHHHHHHHHHHHhhccccc
Q 002783 664 LEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLS-DSKAFWRVRIEAAYALANTASEET 723 (881)
Q Consensus 664 L~~d~dv~aq~eai~~L~~~~~~~~~~~~~L~~~l~-d~~~f~~vR~~Aa~aL~~~~~~~~ 723 (881)
+..|.+..-|..|+.+|+..+. ...+..|...|. |+. ++||..|+.+|+++..+..
T Consensus 82 ~l~d~~~~vr~~a~~aLg~~~~--~~a~~~li~~l~~d~~--~~vR~~aa~aL~~~~~~~a 138 (335)
T COG1413 82 LLSDEDPRVRDAAADALGELGD--PEAVPPLVELLENDEN--EGVRAAAARALGKLGDERA 138 (335)
T ss_pred HhcCCCHHHHHHHHHHHHccCC--hhHHHHHHHHHHcCCc--HhHHHHHHHHHHhcCchhh
Confidence 3456777778899999998753 356778889888 454 8999999999999987653
No 36
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=60.72 E-value=1.5e+02 Score=36.99 Aligned_cols=114 Identities=12% Similarity=0.205 Sum_probs=57.9
Q ss_pred cEEEEEcCCchhHHH--------HHHHHHHHHHHHHHHHhCCCC-CCCCcc-----EEEECCCCcccccccccchhhccc
Q 002783 265 LMSHICLPANVSKIH--------NTVEFFHNAFSHYETYLDAKF-PFGSYK-----QVFLAPEMAVSSSTFGAAMGIFSS 330 (881)
Q Consensus 265 ~v~~~~~p~~~~~~~--------~~~~~~~~~l~~~e~~~g~~Y-P~~k~~-----~V~vp~~~~~~~~~~gagl~~~~~ 330 (881)
.|.+..+|...+.+. ...++=..++++|.++.|..+ |-...+ .-|+- ++ ..|+|-..|+.
T Consensus 144 ~i~lLVP~~Dk~~l~~~~~~~l~~L~~~Y~~i~~~Yd~l~Gl~~~~~~~~~~n~~~kYF~K-----AD-~~G~G~AYY~~ 217 (775)
T PF03272_consen 144 YIQLLVPPADKPNLNNKDFKSLDELIDFYNDIFKFYDDLTGLSDDPSDPVDKNFNNKYFAK-----AD-KSGPGAAYYGS 217 (775)
T ss_pred EEEEEeCcchHHHHhhhcccCHHHHHHHHHHHHHHHHhhhCCCCCCCcccccccccceEEE-----ec-CCCCCCccccc
Confidence 466677777665554 334555678888888888433 211111 11221 21 12334444443
Q ss_pred ccccCcccchhhhh----hHHHHHHHHHHhhhcccccC-CCCChhHHHHHHHHHHHHHHH
Q 002783 331 QILYDEKVIDQAID----TSIKLSFALARQWFGVYITP-ELPNDEWLLDGLAGFLTDSFI 385 (881)
Q Consensus 331 ~lL~~~~~~~~~~~----~~~~iaHElAHQWfG~lVt~-~~w~d~WL~EGfA~Y~~~~~~ 385 (881)
...-....+-..+- +--.+-|||+|.+=|.++.. ..+.+.| |-=+|.++++.++
T Consensus 218 ~w~a~ss~s~~~~L~~~~~nW~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~ 276 (775)
T PF03272_consen 218 NWTAQSSSSLSFYLNPSPTNWGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYM 276 (775)
T ss_pred cceecCchhHHHHhCCCCCCchhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhc
Confidence 32211111100110 11157899999998888733 3455666 4456666665544
No 37
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=57.97 E-value=29 Score=26.87 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=21.9
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhh
Q 002783 690 VVNTLNNFLSDSKAFWRVRIEAAYALANT 718 (881)
Q Consensus 690 ~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~ 718 (881)
+...|...|.|... .||..|+.+|+++
T Consensus 29 ~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 29 LLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred HHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 45568888888765 9999999999864
No 38
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=55.01 E-value=20 Score=34.56 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=32.1
Q ss_pred HHHHHHH-HHhCCCCCCCCccEEEECCCCcccccccccchhhc-ccccccCcccchhh--hhhHHHHHHHHHHhhhc
Q 002783 287 NAFSHYE-TYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVIDQA--IDTSIKLSFALARQWFG 359 (881)
Q Consensus 287 ~~l~~~e-~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~~~~--~~~~~~iaHElAHQWfG 359 (881)
+.++-++ .+|+.++|-+ .+.+-. -+ . ..+ |.... ...+-+++...+.. .....+|.|||||.|..
T Consensus 5 ~~~~~~n~~~F~~~l~~~--~i~w~~-r~--~-~~~--G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHP--KVVWNK-RL--R-KTG--GRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCC--EEEEeh-hh--h-hhh--HHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHHH
Confidence 3444454 7888777765 333322 11 0 112 22222 22344444443311 22345899999999975
No 39
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=53.02 E-value=28 Score=35.35 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHH
Q 002783 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (881)
Q Consensus 346 ~~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~ 388 (881)
-.++|||+.|-|.-. .--.--+.++-||+..-++++|++..
T Consensus 94 gsiLAHE~mHa~Lrl--~g~~~L~~~vEEGiCqvla~~wL~~~ 134 (212)
T PF12315_consen 94 GSILAHELMHAWLRL--NGFPNLSPEVEEGICQVLAYLWLESE 134 (212)
T ss_pred hhHHHHHHHHHHhcc--cCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 347999999999622 22223367999999999999998753
No 40
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=50.45 E-value=31 Score=35.11 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCccEEEECCCCccccccccc----chhhcccccccCcccchhhhhhHHHHHHHHHH
Q 002783 280 NTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILYDEKVIDQAIDTSIKLSFALAR 355 (881)
Q Consensus 280 ~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga----gl~~~~~~lL~~~~~~~~~~~~~~~iaHElAH 355 (881)
.+...+...++.|++.+|.+ .+++.+-- + -..||. |.++++..|+.-|.. -...+|+|||||
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~--~~~i~ir~----~---ksrWGsc~~~~~I~ln~~L~~~P~~-----~idYVvvHEL~H 174 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLP--PPKIKIRD----M---KSRWGSCSSKGNITLNWRLVMAPPE-----VIDYVVVHELCH 174 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCC--cceEEEee----h---hhccccCCCCCcEEeecccccCCcc-----HHHHHHHHHHHH
Confidence 45567788888899998864 34433321 1 124543 455566555443321 134589999999
Q ss_pred hhhcc
Q 002783 356 QWFGV 360 (881)
Q Consensus 356 QWfG~ 360 (881)
-..-|
T Consensus 175 l~~~n 179 (205)
T PF01863_consen 175 LRHPN 179 (205)
T ss_pred hccCC
Confidence 87543
No 41
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=48.58 E-value=20 Score=30.60 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCCCCCCccEEEECCCCcccccccccchhhcccccccCcccchh-hhhhHHHHHHHHHHhh
Q 002783 288 AFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQ-AIDTSIKLSFALARQW 357 (881)
Q Consensus 288 ~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~-~~~~~~~iaHElAHQW 357 (881)
+...+|..||.+ |+...+-.-|... ......+|--.+....+.+.+....+ ......+++|||+|=|
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a~-~~~~~~~A~A~T~G~~I~f~~g~~~~~s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAAS-RAAAALGARAFTVGNDIYFAPGKYNPDSPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCchh-hhhhccCCeEEEECCEEEEcCCCcCCCCCCcchhHhHHHHHHH
Confidence 456778899854 6666654432111 11112233223445555554332111 1123558999999964
No 42
>PRK04860 hypothetical protein; Provisional
Probab=48.11 E-value=43 Score=32.83 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCccEEEECCCCcccccccccchhhc-ccccccCcccch--hhhhhHHHHHHHHHHhhh
Q 002783 282 VEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVID--QAIDTSIKLSFALARQWF 358 (881)
Q Consensus 282 ~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~~--~~~~~~~~iaHElAHQWf 358 (881)
...+...+..-+++||.|||-+... |-.- + -. ||.... +..+=++|.... .......+|+|||||.|-
T Consensus 6 ~~~~~~~~~~a~~~f~~~f~~p~~~--f~~R---~---rt-aG~~~l~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~~ 76 (160)
T PRK04860 6 MRRLRECLAQANLYFKRTFPEPKVS--YTQR---G---TS-AGTAWLQSNEIRLNPVLLLENQQAFIDEVVPHELAHLLV 76 (160)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEEE--Eeec---c---hh-hcchhHhcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHHH
Confidence 3445566666678888877765432 2111 1 11 232222 222333333211 112234589999999873
No 43
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=48.03 E-value=4.8e+02 Score=29.90 Aligned_cols=117 Identities=23% Similarity=0.166 Sum_probs=80.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhc
Q 002783 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 738 (881)
Q Consensus 659 m~~~qL~~d~dv~aq~eai~~L~~~~~~~~~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~ 738 (881)
-+...| +|.|..-+-+|++.|...+.. .....|...+.|+. -.||..|+.+|+.+..++. ...|+.++.+.
T Consensus 151 ~L~~~L-~d~d~~Vra~A~raLG~l~~~--~a~~~L~~al~d~~--~~VR~aA~~al~~lG~~~A----~~~l~~~~~~~ 221 (410)
T TIGR02270 151 ALEAAL-THEDALVRAAALRALGELPRR--LSESTLRLYLRDSD--PEVRFAALEAGLLAGSRLA----WGVCRRFQVLE 221 (410)
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHhhccc--cchHHHHHHHcCCC--HHHHHHHHHHHHHcCCHhH----HHHHHHHHhcc
Confidence 444455 588988899999999987643 34566888888876 5999999999998876543 45566655431
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhcccc
Q 002783 739 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (881)
Q Consensus 739 ~~~~~~~~p~~n~f~~~~~y~~~~ai~~a~~~~r~~~~~~p~~v~~~l~~~l~~ndns~n~y~D~~y~a~li~al~~~~~ 818 (881)
+.| ...++..+++... .+++.+.|..+++. .+.+.+.+.|||.+..
T Consensus 222 ------g~~------------~~~~l~~~lal~~------~~~a~~~L~~ll~d----------~~vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 222 ------GGP------------HRQRLLVLLAVAG------GPDAQAWLRELLQA----------AATRREALRAVGLVGD 267 (410)
T ss_pred ------Ccc------------HHHHHHHHHHhCC------chhHHHHHHHHhcC----------hhhHHHHHHHHHHcCC
Confidence 122 2233344444441 23899999999983 3378899999997654
No 44
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=42.31 E-value=83 Score=33.27 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Q 002783 758 YFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLL 837 (881)
Q Consensus 758 y~~~~ai~~a~~~~r~~~~~~p~~v~~~l~~~l~~ndns~n~y~D~~y~a~li~al~~~~~~~~~~~~~~~~~~~i~r~~ 837 (881)
=|++.+..+|+..+-..+.....+|.+.+.+++.++=+.+.+ |-...||.++.++. ...++.+|.+.-
T Consensus 127 ~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~----~~~~~Lv~~~~dL~--------~~EL~~~I~~~f 194 (249)
T PF06685_consen 127 EYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPS----FLWGSLVADICDLY--------PEELLPEIRKAF 194 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHhcC--------HHHhHHHHHHHH
Confidence 357888999999887777778999999999999876655444 45667777666653 244566666665
Q ss_pred hccccccCC
Q 002783 838 QFDRLMPSY 846 (881)
Q Consensus 838 ~~d~~~psy 846 (881)
..+.+-|++
T Consensus 195 ~~~lVd~~~ 203 (249)
T PF06685_consen 195 EDGLVDPSF 203 (249)
T ss_pred HcCCCCccc
Confidence 555444443
No 45
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=42.20 E-value=12 Score=42.24 Aligned_cols=73 Identities=26% Similarity=0.260 Sum_probs=45.9
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHH----HHHHH
Q 002783 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFV----LEAIP 765 (881)
Q Consensus 690 ~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~~----~~ai~ 765 (881)
+-.+|+..+.+.. =++||+.||.+|+.-+..+....-+..+.+..-. .+.+.|+|-+|.+|-- ++.||
T Consensus 574 ~F~~L~~Lv~~~~-NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~-------aLi~s~~~v~f~eY~~~Dsl~~q~c 645 (728)
T KOG4535|consen 574 AFNALTSLVTSCK-NFKVRIRAAAALSVPGKREQYGDQYALSWNALVT-------ALQKSEDTIDFLEYKYCDSLRTQIC 645 (728)
T ss_pred HHHHHHHHHHHhc-cceEeehhhhhhcCCCCcccchhHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666654 3899999999999888765432222222222111 1446899999999964 55566
Q ss_pred HHHhh
Q 002783 766 HAVAM 770 (881)
Q Consensus 766 ~a~~~ 770 (881)
.|+..
T Consensus 646 ~av~h 650 (728)
T KOG4535|consen 646 QALIH 650 (728)
T ss_pred HHHHH
Confidence 66643
No 46
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.70 E-value=2e+02 Score=34.40 Aligned_cols=163 Identities=21% Similarity=0.262 Sum_probs=93.2
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhccccccc--cchHHHHHHHHhcCCCCCCCCCCCCCCCChHHHH--------
Q 002783 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW--AGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYF-------- 759 (881)
Q Consensus 690 ~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~--~g~~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~-------- 759 (881)
+|-+|..-|+|| ||-||.+|..+|.+.+...+.+ ..+..|+.+|..-.- ..|- .+-|-
T Consensus 374 ACGA~VhGlEDE--f~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~-----~VRL-----~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 374 ACGALVHGLEDE--FYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIE-----VVRL-----KAIFALTMISVHL 441 (823)
T ss_pred ccceeeeechHH--HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHH-----HHHH-----HHHHHHHHHHHHh
Confidence 578888889886 9999999999999998855444 456777777653210 0010 00000
Q ss_pred -HHHH-HHHHHhhccccCCCChHHHHHHHHHHhhccCCCCCCCchHHH----HHHHHHHhhcc------------ccccc
Q 002783 760 -VLEA-IPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFW----LAALVQSVGEL------------EFGQQ 821 (881)
Q Consensus 760 -~~~a-i~~a~~~~r~~~~~~p~~v~~~l~~~l~~ndns~n~y~D~~y----~a~li~al~~~------------~~~~~ 821 (881)
|++. ++..+..++| +-.+|++-|.++|+ |. .|+|--- ++.|++.|+.- .+++.
T Consensus 442 ~i~eeql~~il~~L~D----~s~dvRe~l~elL~---~~--~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqn 512 (823)
T KOG2259|consen 442 AIREEQLRQILESLED----RSVDVREALRELLK---NA--RVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQN 512 (823)
T ss_pred eecHHHHHHHHHHHHh----cCHHHHHHHHHHHH---hc--CCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhcc
Confidence 1111 2233333333 45678888888887 32 4666444 44555555532 12222
Q ss_pred cHHHHHH-HHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHhhcCcccchh
Q 002783 822 SILFLSS-LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLGF 873 (881)
Q Consensus 822 ~~~~~~~-~~~~i~r~~~~d~~~psy~~~vt~~~l~~~~~~~~~~~~~~~~~~ 873 (881)
...+... +..-++.......--||...--.++-|..+.+.+...-|.|.+=|
T Consensus 513 H~~lv~s~m~rfl~kh~~f~t~e~s~ed~~y~akLilv~nAa~~~p~ii~s~P 565 (823)
T KOG2259|consen 513 HRRLVLSNMGRFLEKHTSFATIEPSLEDGFYIAKLILVRNAARADPGIIVSRP 565 (823)
T ss_pred ChhhHHHHHHHHHHhcccccccCccccChhhhhhhhhhhhhhhhCCCeeeech
Confidence 2222222 222233344556667888887788888888888876666665533
No 47
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=38.50 E-value=82 Score=33.33 Aligned_cols=71 Identities=25% Similarity=0.184 Sum_probs=50.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHH
Q 002783 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (881)
Q Consensus 659 m~~~qL~~d~dv~aq~eai~~L~~~~~~~~~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f 735 (881)
.|+++--.|.....-.+....|.+.... .++..|...|.|+.----||-|||.||+.....+. +..|.|+.
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~~--~Av~~l~~vl~desq~pmvRhEAaealga~~~~~~----~~~l~k~~ 109 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQDE--DAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPES----LEILTKYI 109 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhccc--hhhHHHHHHhcccccchHHHHHHHHHHHhhcchhh----HHHHHHHh
Confidence 4555555555555566777788876432 45788999999998889999999999998874433 45566665
No 48
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.17 E-value=48 Score=36.47 Aligned_cols=119 Identities=24% Similarity=0.293 Sum_probs=69.8
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhcccc------ccccchHHHHHHHHh---------cCCCCCCCCC-------
Q 002783 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEE------TDWAGLLHLVKFYKS---------RRFDENIGLP------- 747 (881)
Q Consensus 690 ~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~------~~~~g~~~L~~~f~~---------~~~~~~~~~p------- 747 (881)
++.+|...+.|.. -+|.++|+.||...++.. +.-.++++|.+..++ .+|..+..|-
T Consensus 252 lv~~Lv~Lmd~~s--~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 252 LVPALVDLMDDGS--DKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI 329 (550)
T ss_pred hHHHHHHHHhCCC--hHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccce
Confidence 4566776665543 699999999999988752 233468999888875 2354322211
Q ss_pred CCCCCC--------------------------------ChHHHHHHHHHHHHHhhccccCCCChHHHHH---HHHHHhhc
Q 002783 748 RPNDFR--------------------------------DFSEYFVLEAIPHAVAMVRAADNKSPREAVE---FVLQLLKY 792 (881)
Q Consensus 748 ~~n~f~--------------------------------~~~~y~~~~ai~~a~~~~r~~~~~~p~~v~~---~l~~~l~~ 792 (881)
..-.|- |....+---|||+-++.++|. |-+++. --+-+|.|
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~----pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG----PVSVQSEISACIAQLAL 405 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC----ChhHHHHHHHHHHHHHh
Confidence 111111 111111122455555555543 333333 34567899
Q ss_pred cCCCCCCCchHHHHHHHHHHhh
Q 002783 793 NDNNGNPYSDVFWLAALVQSVG 814 (881)
Q Consensus 793 ndns~n~y~D~~y~a~li~al~ 814 (881)
|||+...++|+--+-.||.=++
T Consensus 406 ~d~~k~~lld~gi~~iLIp~t~ 427 (550)
T KOG4224|consen 406 NDNDKEALLDSGIIPILIPWTG 427 (550)
T ss_pred ccccHHHHhhcCCcceeecccC
Confidence 9999999999887777765444
No 49
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=38.05 E-value=14 Score=45.99 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=77.9
Q ss_pred ccccchhhhHHHHHHHHHHhhChHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcC-----------CCccCHHhH
Q 002783 433 IFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGN-----------LERPFLKEF 501 (881)
Q Consensus 433 ~f~~i~Y~Kg~~VL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~~~~~~-----------~~~~~l~~f 501 (881)
.|....-.|+.++.+|+++++|.+-|.+.+++.+...... ....|...+-...| ..+++++-+
T Consensus 444 ~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~------~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~ 517 (1180)
T KOG1932|consen 444 SYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM------LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMG 517 (1180)
T ss_pred hHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh------HHHHHHHHHHhccCCeeEEEEEEEeeccccccHH
Confidence 3444445799999999999999999999999999876442 22333333322222 246789999
Q ss_pred HHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCC
Q 002783 502 FPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVK 538 (881)
Q Consensus 502 ~~~Wv~~~G~P~l~v~~~~n~k~~~v~l~~~q~~~~~ 538 (881)
++||+.++|...+.|...||++++.++..++|..+..
T Consensus 518 i~Q~v~~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g 554 (1180)
T KOG1932|consen 518 IDQWVRTGGHAPFSVFSDFNRKRNALEHEIKQDYTAG 554 (1180)
T ss_pred HHHHhhhccccceeeecccchhhhhhhhhccccccCC
Confidence 9999999999999999999999999999999877654
No 50
>PTZ00429 beta-adaptin; Provisional
Probab=34.02 E-value=9.2e+02 Score=30.01 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=43.4
Q ss_pred HHHHHHhh---cCChHHHHHHHHHHHcCCCCch--hHHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 002783 659 MWINQLEK---DGDVVAQAQAIAALEALPHLSF--NVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (881)
Q Consensus 659 m~~~qL~~---d~dv~aq~eai~~L~~~~~~~~--~~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~ 720 (881)
+-++.|++ |++-.-|--|++.|+....... .+...+.++|.|.. --||..||.+++++-.
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~--pYVRKtAalai~Kly~ 169 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPD--PYVRKTAAMGLGKLFH 169 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHh
Confidence 33555554 5777888899999997654322 24456788898876 5799999999999754
No 51
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=33.02 E-value=3.2e+02 Score=29.07 Aligned_cols=128 Identities=23% Similarity=0.328 Sum_probs=76.6
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHHcCCCCchh--------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchH
Q 002783 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFN--------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLL 729 (881)
Q Consensus 658 ~m~~~qL~~d~dv~aq~eai~~L~~~~~~~~~--------~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~ 729 (881)
.+.+.-|+..+|..-|-.|..+|......+.. ....+...|.+. .-.||..|..+|...+....+..
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p--~~~vr~~AL~aL~Nls~~~en~~--- 89 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP--NPSVREKALNALNNLSVNDENQE--- 89 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC--ChHHHHHHHHHHHhcCCChhhHH---
Confidence 46677888888888888888777765322211 122345555553 57999999999998876532211
Q ss_pred HHHHHHHhcCCC-----C-CC-----------CCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhc
Q 002783 730 HLVKFYKSRRFD-----E-NI-----------GLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKY 792 (881)
Q Consensus 730 ~L~~~f~~~~~~-----~-~~-----------~~p~~n~f~~~~~y~~~~ai~~a~~~~r~~~~~~p~~v~~~l~~~l~~ 792 (881)
.++.|-..-|. + ++ ++...|+. ++.+.+.||.-+..+...++++-..|...|++|=..
T Consensus 90 -~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~----~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 90 -QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY----HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred -HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch----hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 12222221111 1 11 23333333 455677788888777666666666788888887764
Q ss_pred cCC
Q 002783 793 NDN 795 (881)
Q Consensus 793 ndn 795 (881)
.++
T Consensus 165 p~~ 167 (254)
T PF04826_consen 165 PDM 167 (254)
T ss_pred HHH
Confidence 444
No 52
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=32.64 E-value=41 Score=30.32 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHhhhcccc
Q 002783 345 TSIKLSFALARQWFGVYI 362 (881)
Q Consensus 345 ~~~~iaHElAHQWfG~lV 362 (881)
.+-+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 345899999999988765
No 53
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.27 E-value=2.9e+02 Score=35.26 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=0.0
Q ss_pred chhHHHHHHhhcCChHHHHHHHHHHHcCCCCchh--------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccc
Q 002783 656 PVQMWINQLEKDGDVVAQAQAIAALEALPHLSFN--------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAG 727 (881)
Q Consensus 656 ~~~m~~~qL~~d~dv~aq~eai~~L~~~~~~~~~--------~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g 727 (881)
|-+.|+.++.+..+..-+.-|+.+|+-...+... +..+....|.|... +||-+|+.|++++++.-
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphp--rVr~AA~naigQ~stdl----- 420 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHP--RVRYAALNAIGQMSTDL----- 420 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHhhhhhh-----
Q ss_pred hHHHHHHHHhcCCCCCCCCC--CCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHH----HHHH-HhhccCCCCCCC
Q 002783 728 LLHLVKFYKSRRFDENIGLP--RPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVE----FVLQ-LLKYNDNNGNPY 800 (881)
Q Consensus 728 ~~~L~~~f~~~~~~~~~~~p--~~n~f~~~~~y~~~~ai~~a~~~~r~~~~~~p~~v~~----~l~~-~l~~ndns~n~y 800 (881)
.+++.|.+.++ +| .--.-.+...-.||. +|.+-+-+-.-.|+..+.. .|+. +|..=-++++++
T Consensus 421 ~p~iqk~~~e~-------l~~aL~~~ld~~~~~rV~a---hAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~ 490 (1075)
T KOG2171|consen 421 QPEIQKKHHER-------LPPALIALLDSTQNVRVQA---HAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPY 490 (1075)
T ss_pred cHHHHHHHHHh-------ccHHHHHHhcccCchHHHH---HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchh
Q ss_pred chHHHHHHHHHHhhcccccccc--HHHHHHHHHHHHHHHh
Q 002783 801 SDVFWLAALVQSVGELEFGQQS--ILFLSSLLKRIDRLLQ 838 (881)
Q Consensus 801 ~D~~y~a~li~al~~~~~~~~~--~~~~~~~~~~i~r~~~ 838 (881)
-...++.|+|.+....+. ....++++.=+..++.
T Consensus 491 ----v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~ 526 (1075)
T KOG2171|consen 491 ----VQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQ 526 (1075)
T ss_pred ----HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHh
No 54
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=31.47 E-value=3.5e+02 Score=33.93 Aligned_cols=64 Identities=25% Similarity=0.377 Sum_probs=44.1
Q ss_pred cCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCCh
Q 002783 700 DSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP 779 (881)
Q Consensus 700 d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~~~~ai~~a~~~~r~~~~~~p 779 (881)
|++.=|.||-+||++|+..-... +..|.++|++. -|.-+++.++.....-
T Consensus 341 DeD~SWkVRRaAaKcl~a~IsSR-----~E~L~~~~q~l-------------------------~p~lI~RfkEREEnVk 390 (1233)
T KOG1824|consen 341 DEDMSWKVRRAAAKCLEAVISSR-----LEMLPDFYQTL-------------------------GPALISRFKEREENVK 390 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHh-------------------------CHHHHHHHHHHhhhHH
Confidence 45566999999999999877643 44455555543 3666677766665566
Q ss_pred HHHHHHHHHHhhcc
Q 002783 780 REAVEFVLQLLKYN 793 (881)
Q Consensus 780 ~~v~~~l~~~l~~n 793 (881)
.++..-++++|+.-
T Consensus 391 ~dvf~~yi~ll~qt 404 (1233)
T KOG1824|consen 391 ADVFHAYIALLKQT 404 (1233)
T ss_pred HHHHHHHHHHHHcC
Confidence 77777777777743
No 55
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=31.12 E-value=4.9e+02 Score=30.47 Aligned_cols=168 Identities=18% Similarity=0.183 Sum_probs=91.8
Q ss_pred HHHHhhcCChHHHHHHHHHHHcC----CCCchh-HHhHHHhhhccCcchhHHHHHHHHHHHhh-ccccccccchHHHHHH
Q 002783 661 INQLEKDGDVVAQAQAIAALEAL----PHLSFN-VVNTLNNFLSDSKAFWRVRIEAAYALANT-ASEETDWAGLLHLVKF 734 (881)
Q Consensus 661 ~~qL~~d~dv~aq~eai~~L~~~----~~~~~~-~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~-~~~~~~~~g~~~L~~~ 734 (881)
+.++..|++..-|-.|+.++.+. |..... ....|.+.|.|.. .+|+..|+.+|..+ .+++....=++.+.+.
T Consensus 119 v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~--~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~ 196 (526)
T PF01602_consen 119 VIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD--PSVVSAALSLLSEIKCNDDSYKSLIPKLIRI 196 (526)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS--HHHHHHHHHHHHHHHCTHHHHTTHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHccCcchhhhhHHHHHHH
Confidence 66777888888888888776644 433223 4677888887765 89999999999999 3322211112223333
Q ss_pred HHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCCh--HHHHHHHHHHhhccCCCCCCCchHHHHHHHHHH
Q 002783 735 YKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP--REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQS 812 (881)
Q Consensus 735 f~~~~~~~~~~~p~~n~f~~~~~y~~~~ai~~a~~~~r~~~~~~p--~~v~~~l~~~l~~ndns~n~y~D~~y~a~li~a 812 (881)
..+.- +.+. -++|..+.+.+..+-......+ ..+.+.|..+|+ .++.--+-+.+++
T Consensus 197 L~~~l-----~~~~---------~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~--------s~~~~V~~e~~~~ 254 (526)
T PF01602_consen 197 LCQLL-----SDPD---------PWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ--------SSSPSVVYEAIRL 254 (526)
T ss_dssp HHHHH-----TCCS---------HHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred hhhcc-----cccc---------hHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhh--------ccccHHHHHHHHH
Confidence 22210 0111 2577777777776633222223 346677777777 1222233344444
Q ss_pred hhccccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHH
Q 002783 813 VGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQI 861 (881)
Q Consensus 813 l~~~~~~~~~~~~~~~~~~~i~r~~~~d~~~psy~~~vt~~~l~~~~~~ 861 (881)
+..+.. ....+..++.-+-+++. |...-+-..+|++|.++
T Consensus 255 i~~l~~---~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l 294 (526)
T PF01602_consen 255 IIKLSP---SPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQL 294 (526)
T ss_dssp HHHHSS---SHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHH
T ss_pred HHHhhc---chHHHHhhHHHHHHHhh------cccchhehhHHHHHHHh
Confidence 443222 12245566666666664 22333444555655554
No 56
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=27.94 E-value=78 Score=32.47 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhhhcccccC
Q 002783 345 TSIKLSFALARQWFGVYITP 364 (881)
Q Consensus 345 ~~~~iaHElAHQWfG~lVt~ 364 (881)
...+||||++|-.-++....
T Consensus 89 l~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 89 LAAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp HHHHHHHHHHHHHTTHCCCC
T ss_pred HHHHHHHHHHHHHcCCcchH
Confidence 34589999999998877654
No 57
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=27.11 E-value=2.5e+02 Score=27.27 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 002783 275 VSKIHNTVEFFHNAFSHYETYLDAKFPFG 303 (881)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~e~~~g~~YP~~ 303 (881)
...+..+...+..+.+||.++|| .=++.
T Consensus 66 ~~~~vdA~~~~~~v~d~y~~~~g-r~siD 93 (150)
T PF01447_consen 66 DSAAVDAHYNAGKVYDYYKNVFG-RNSID 93 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHS-S-STT
T ss_pred ccHHHHHHHhHHHHHHHHHHHHC-CCCcC
Confidence 34556677788899999999999 55665
No 58
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=25.50 E-value=1.4e+02 Score=28.74 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHhhhccc
Q 002783 344 DTSIKLSFALARQWFGVY 361 (881)
Q Consensus 344 ~~~~~iaHElAHQWfG~l 361 (881)
....+|.|||+|.|....
T Consensus 59 ~~~~tL~HEm~H~~~~~~ 76 (157)
T PF10263_consen 59 ELIDTLLHEMAHAAAYVF 76 (157)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 345589999999997433
No 59
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=25.49 E-value=45 Score=29.98 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhh
Q 002783 346 SIKLSFALARQW 357 (881)
Q Consensus 346 ~~~iaHElAHQW 357 (881)
+.+++|||+|-|
T Consensus 80 ~~TL~HEL~H~W 91 (141)
T PHA02456 80 RDTLAHELNHAW 91 (141)
T ss_pred HHHHHHHHHHHH
Confidence 457999999999
No 60
>PHA01816 hypothetical protein
Probab=24.02 E-value=1.1e+02 Score=27.80 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=23.5
Q ss_pred HHHHhhccccCCCChHHHHHHHHHHhhccCCCCCCC
Q 002783 765 PHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPY 800 (881)
Q Consensus 765 ~~a~~~~r~~~~~~p~~v~~~l~~~l~~ndns~n~y 800 (881)
..|+|.||... .--...+|++-.-||||+|.=
T Consensus 68 ~navslvrg~r----hkkln~ileiynrnd~snnkn 99 (160)
T PHA01816 68 VNAVSLVRGSR----HKKLNYILEIYNRNDDSNNKN 99 (160)
T ss_pred hhhhhhhhccc----hhhhHHHHHHHhcCCCcccch
Confidence 45778887542 234567899999999999874
No 61
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=22.84 E-value=2.6e+02 Score=24.87 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHh
Q 002783 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVA 769 (881)
Q Consensus 690 ~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~n~f~~~~~y~~~~ai~~a~~ 769 (881)
+..-+..++.|+. ++||-.|+.+|..++.-. ...++..|.+.| .+|+
T Consensus 28 Il~pVL~~~~D~d--~rVRy~AcEaL~ni~k~~-----~~~~l~~f~~IF--------------------------~~L~ 74 (97)
T PF12755_consen 28 ILPPVLKCFDDQD--SRVRYYACEALYNISKVA-----RGEILPYFNEIF--------------------------DALC 74 (97)
T ss_pred HHHHHHHHcCCCc--HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH--------------------------HHHH
Q ss_pred hccccCCCChHHHHHHHHHHhh
Q 002783 770 MVRAADNKSPREAVEFVLQLLK 791 (881)
Q Consensus 770 ~~r~~~~~~p~~v~~~l~~~l~ 791 (881)
++=......-....++|-.+||
T Consensus 75 kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 75 KLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHcCCchhHHHHHHHHHHHhc
No 62
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=22.82 E-value=47 Score=33.03 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhh
Q 002783 346 SIKLSFALARQW 357 (881)
Q Consensus 346 ~~~iaHElAHQW 357 (881)
..++||||+|||
T Consensus 112 ~~~~aHElGH~l 123 (173)
T PF13574_consen 112 IDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehhhhHhhc
Confidence 347999999997
No 63
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=22.59 E-value=44 Score=36.83 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCchHhHHHHH
Q 002783 347 IKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK 400 (881)
Q Consensus 347 ~~iaHElAHQWfG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~~~~~~~~~ 400 (881)
.++|||+|||= |- ..|+=|+|++++...+- .+..++|..+.
T Consensus 198 ~T~~HElAHq~-G~-----------a~E~EANFiayLac~~s-~d~~frYSgy~ 238 (318)
T PF12725_consen 198 FTICHELAHQL-GF-----------ASEDEANFIAYLACINS-PDPYFRYSGYL 238 (318)
T ss_pred HHHHHHHHHHh-CC-----------CCHHHHHHHHHHHHhcC-CChheeHHHHH
Confidence 47999999994 22 26888999988876542 33344554433
No 64
>PRK04351 hypothetical protein; Provisional
Probab=22.38 E-value=95 Score=30.09 Aligned_cols=12 Identities=8% Similarity=-0.095 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHh
Q 002783 345 TSIKLSFALARQ 356 (881)
Q Consensus 345 ~~~~iaHElAHQ 356 (881)
...+|+|||+|-
T Consensus 61 l~~vv~HElcH~ 72 (149)
T PRK04351 61 LIGIIKHELCHY 72 (149)
T ss_pred HHhhHHHHHHHH
Confidence 355899999995
No 65
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.29 E-value=5.1e+02 Score=31.24 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=35.6
Q ss_pred HHHHHHhhccccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHH
Q 002783 763 AIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQ 811 (881)
Q Consensus 763 ai~~a~~~~r~~~~~~p~~v~~~l~~~l~~ndns~n~y~D~~y~a~li~ 811 (881)
.|-.+|+.|=-.|+.=-.-+..-|++..-.-.-++-++.|.+|+|.||-
T Consensus 501 ~i~~cm~~iGqnH~~lv~s~m~rfl~kh~~f~t~e~s~ed~~y~akLil 549 (823)
T KOG2259|consen 501 EILRCMGRIGQNHRRLVLSNMGRFLEKHTSFATIEPSLEDGFYIAKLIL 549 (823)
T ss_pred HHHHHHHHHhccChhhHHHHHHHHHHhcccccccCccccChhhhhhhhh
Confidence 5677777775455544444555566666667788899999999999984
No 66
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=21.91 E-value=5.9e+02 Score=24.85 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=25.9
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhcccc
Q 002783 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEE 722 (881)
Q Consensus 690 ~~~~L~~~l~d~~~f~~vR~~Aa~aL~~~~~~~ 722 (881)
.-..|.++|..|+. +.+|.||.+.|+-+.--+
T Consensus 11 LL~~L~~iLk~e~s-~~iR~E~lr~lGilGALD 42 (160)
T PF11865_consen 11 LLDILLNILKTEQS-QSIRREALRVLGILGALD 42 (160)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHhhhccccC
Confidence 35678899999865 999999999999776434
No 67
>PRK03982 heat shock protein HtpX; Provisional
Probab=20.54 E-value=1.6e+02 Score=31.80 Aligned_cols=16 Identities=6% Similarity=-0.219 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhhhcc
Q 002783 345 TSIKLSFALARQWFGV 360 (881)
Q Consensus 345 ~~~~iaHElAHQWfG~ 360 (881)
...++|||++|-==|+
T Consensus 125 l~AVlAHElgHi~~~h 140 (288)
T PRK03982 125 LEGVIAHELTHIKNRD 140 (288)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4558999999975443
No 68
>PRK03001 M48 family peptidase; Provisional
Probab=20.37 E-value=1.6e+02 Score=31.88 Aligned_cols=15 Identities=13% Similarity=-0.048 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHhhhc
Q 002783 345 TSIKLSFALARQWFG 359 (881)
Q Consensus 345 ~~~~iaHElAHQWfG 359 (881)
...++|||++|-==+
T Consensus 124 l~aVlAHElgHi~~~ 138 (283)
T PRK03001 124 IRGVMAHELAHVKHR 138 (283)
T ss_pred HHHHHHHHHHHHhCC
Confidence 455899999997443
No 69
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=20.26 E-value=5 Score=28.40 Aligned_cols=19 Identities=5% Similarity=0.055 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhccccCCCC
Q 002783 760 VLEAIPHAVAMVRAADNKS 778 (881)
Q Consensus 760 ~~~ai~~a~~~~r~~~~~~ 778 (881)
|||-....|+.+||.+|+|
T Consensus 9 LqCY~v~gM~sl~D~~gRT 27 (39)
T PF09292_consen 9 LQCYSVPGMKSLRDRNGRT 27 (39)
T ss_dssp -SSTT-TT-EEEE-TTS-E
T ss_pred HHHhcccccccccccCCCE
Confidence 5666666788999999875
Done!