Query 002784
Match_columns 881
No_of_seqs 374 out of 2719
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:03:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0060 IleS Isoleucyl-tRNA sy 100.0 4E-164 9E-169 1454.0 54.5 711 104-871 1-931 (933)
2 PRK13804 ileS isoleucyl-tRNA s 100.0 5E-151 1E-155 1394.0 65.4 730 103-878 6-961 (961)
3 PLN02843 isoleucyl-tRNA synthe 100.0 5E-150 1E-154 1384.2 72.5 758 119-880 1-973 (974)
4 PRK05743 ileS isoleucyl-tRNA s 100.0 2E-148 4E-153 1368.5 63.8 706 104-870 2-911 (912)
5 KOG0433 Isoleucyl-tRNA synthet 100.0 1E-145 3E-150 1220.6 49.8 714 92-873 3-936 (937)
6 PLN02882 aminoacyl-tRNA ligase 100.0 1E-119 3E-124 1124.4 58.9 641 120-806 7-893 (1159)
7 PTZ00427 isoleucine-tRNA ligas 100.0 7E-119 1E-123 1113.4 58.8 650 114-806 65-1019(1205)
8 PRK06039 ileS isoleucyl-tRNA s 100.0 1E-117 2E-122 1103.5 58.6 632 117-803 7-857 (975)
9 TIGR00392 ileS isoleucyl-tRNA 100.0 6E-117 1E-121 1091.5 57.4 618 116-770 1-860 (861)
10 COG0525 ValS Valyl-tRNA synthe 100.0 2E-115 5E-120 1024.8 51.6 596 118-806 2-783 (877)
11 PRK05729 valS valyl-tRNA synth 100.0 5E-111 1E-115 1037.1 53.4 600 115-806 3-780 (874)
12 PLN02381 valyl-tRNA synthetase 100.0 8E-111 2E-115 1040.5 55.2 607 117-805 96-963 (1066)
13 PTZ00419 valyl-tRNA synthetase 100.0 1E-109 3E-114 1035.6 54.6 605 117-805 24-893 (995)
14 PLN02943 aminoacyl-tRNA ligase 100.0 6E-109 1E-113 1019.5 54.3 591 117-805 57-856 (958)
15 PRK14900 valS valyl-tRNA synth 100.0 1E-108 2E-113 1024.1 52.8 607 116-806 14-810 (1052)
16 TIGR00422 valS valyl-tRNA synt 100.0 3E-108 7E-113 1013.2 53.6 599 118-806 2-786 (861)
17 PRK13208 valS valyl-tRNA synth 100.0 1E-106 3E-111 992.3 53.9 598 115-807 4-790 (800)
18 PLN02959 aminoacyl-tRNA ligase 100.0 5E-103 1E-107 974.0 49.9 605 115-784 7-963 (1084)
19 TIGR00395 leuS_arch leucyl-tRN 100.0 7E-98 2E-102 921.9 53.5 587 125-785 2-845 (938)
20 KOG0434 Isoleucyl-tRNA synthet 100.0 3.9E-96 8E-101 813.2 41.7 642 120-806 7-881 (1070)
21 KOG0432 Valyl-tRNA synthetase 100.0 1.5E-94 3.2E-99 825.7 51.0 609 107-806 37-898 (995)
22 PRK12300 leuS leucyl-tRNA synt 100.0 3.6E-93 7.8E-98 876.6 49.5 546 165-784 1-798 (897)
23 PF00133 tRNA-synt_1: tRNA syn 100.0 2.8E-90 6E-95 822.1 26.4 371 129-536 1-402 (601)
24 PRK00390 leuS leucyl-tRNA synt 100.0 2E-88 4.2E-93 826.5 39.2 522 118-725 2-739 (805)
25 TIGR00396 leuS_bact leucyl-tRN 100.0 1.2E-86 2.5E-91 812.2 40.7 514 121-724 1-775 (842)
26 PLN02563 aminoacyl-tRNA ligase 100.0 2.2E-84 4.8E-89 792.8 40.1 528 115-725 74-891 (963)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 2E-68 4.4E-73 631.3 35.5 545 119-727 3-751 (814)
28 KOG0435 Leucyl-tRNA synthetase 100.0 5.4E-60 1.2E-64 527.2 26.4 509 125-725 34-798 (876)
29 KOG0437 Leucyl-tRNA synthetase 100.0 1.3E-57 2.8E-62 510.4 35.4 608 119-783 10-949 (1080)
30 PRK12268 methionyl-tRNA synthe 100.0 5.9E-48 1.3E-52 458.0 30.3 374 150-721 3-521 (556)
31 TIGR00398 metG methionyl-tRNA 100.0 5.9E-46 1.3E-50 438.6 31.0 360 152-700 1-503 (530)
32 PLN02224 methionine-tRNA ligas 100.0 4.3E-45 9.3E-50 430.1 30.6 486 111-700 29-546 (616)
33 PLN02610 probable methionyl-tR 100.0 3.7E-44 8.1E-49 433.6 29.2 463 148-700 15-532 (801)
34 PRK12267 methionyl-tRNA synthe 100.0 4.2E-43 9.1E-48 422.3 30.1 442 150-700 4-478 (648)
35 PRK00133 metG methionyl-tRNA s 100.0 3.9E-42 8.5E-47 414.5 28.8 467 150-700 2-503 (673)
36 PRK11893 methionyl-tRNA synthe 100.0 1.2E-41 2.6E-46 400.9 29.8 335 150-700 1-476 (511)
37 COG0143 MetG Methionyl-tRNA sy 100.0 2.9E-41 6.4E-46 389.3 28.1 467 149-700 4-512 (558)
38 KOG0436 Methionyl-tRNA synthet 100.0 2E-36 4.4E-41 323.5 21.0 458 148-701 37-528 (578)
39 cd00817 ValRS_core catalytic c 100.0 9E-35 1.9E-39 328.9 16.7 131 150-280 1-140 (382)
40 cd00818 IleRS_core catalytic c 100.0 9.8E-33 2.1E-37 307.5 14.5 126 150-275 1-136 (338)
41 cd07960 Anticodon_Ia_Ile_BEm A 100.0 9.6E-28 2.1E-32 244.5 19.9 179 561-747 1-180 (180)
42 cd07961 Anticodon_Ia_Ile_ABEc 99.9 4.4E-27 9.6E-32 240.2 19.0 176 561-744 1-180 (183)
43 cd00668 Ile_Leu_Val_MetRS_core 99.9 1.9E-26 4.1E-31 255.0 12.2 127 151-278 1-134 (312)
44 PF09334 tRNA-synt_1g: tRNA sy 99.9 7.3E-28 1.6E-32 272.5 -0.5 119 152-286 1-126 (391)
45 cd00814 MetRS_core catalytic c 99.9 2E-25 4.2E-30 247.5 11.6 119 151-285 1-126 (319)
46 PRK00260 cysS cysteinyl-tRNA s 99.9 9.2E-24 2E-28 244.5 22.5 338 148-650 22-376 (463)
47 PF08264 Anticodon_1: Anticodo 99.9 1.2E-22 2.6E-27 201.0 18.1 153 605-769 1-153 (153)
48 PTZ00399 cysteinyl-tRNA-synthe 99.9 1.4E-21 3E-26 232.8 25.5 353 150-649 61-437 (651)
49 cd00812 LeuRS_core catalytic c 99.9 9E-23 1.9E-27 225.6 10.8 116 151-280 1-123 (314)
50 TIGR00435 cysS cysteinyl-tRNA 99.8 1.9E-19 4.1E-24 208.3 16.7 90 148-253 20-109 (465)
51 KOG1247 Methionyl-tRNA synthet 99.8 4.3E-19 9.2E-24 190.8 18.0 424 148-699 12-519 (567)
52 PF13603 tRNA-synt_1_2: Leucyl 99.8 6.6E-21 1.4E-25 192.3 2.1 156 274-479 7-185 (185)
53 TIGR03447 mycothiol_MshC cyste 99.8 3.6E-19 7.9E-24 199.9 15.2 327 149-640 36-383 (411)
54 PLN02946 cysteine-tRNA ligase 99.8 3.2E-18 7E-23 198.6 18.9 340 151-650 82-444 (557)
55 PRK12418 cysteinyl-tRNA synthe 99.8 1.2E-18 2.6E-23 194.9 14.5 333 150-649 10-363 (384)
56 PRK14535 cysS cysteinyl-tRNA s 99.7 1.7E-17 3.6E-22 193.5 17.0 319 159-641 256-609 (699)
57 PRK14536 cysS cysteinyl-tRNA s 99.7 3.8E-17 8.2E-22 188.0 19.1 338 158-640 30-400 (490)
58 PRK01611 argS arginyl-tRNA syn 99.7 1.2E-15 2.5E-20 179.5 27.7 90 148-251 109-198 (507)
59 cd07962 Anticodon_Ia_Val Antic 99.7 2.3E-16 5E-21 153.2 16.7 135 561-698 1-135 (135)
60 cd07959 Anticodon_Ia_Leu_AEc A 99.7 1.5E-15 3.3E-20 143.1 14.5 116 561-698 1-117 (117)
61 cd00672 CysRS_core catalytic c 99.6 4.4E-16 9.6E-21 162.2 10.5 94 148-258 19-112 (213)
62 cd07957 Anticodon_Ia_Met Antic 99.6 3.2E-15 7E-20 143.1 12.4 96 601-698 34-129 (129)
63 PRK14534 cysS cysteinyl-tRNA s 99.6 4.8E-14 1E-18 161.7 17.9 334 159-640 29-393 (481)
64 cd07958 Anticodon_Ia_Leu_BEm A 99.5 7.4E-14 1.6E-18 131.3 13.2 117 561-698 1-117 (117)
65 TIGR00456 argS arginyl-tRNA sy 99.4 1.5E-11 3.3E-16 146.4 20.2 143 537-684 409-559 (566)
66 cd00674 LysRS_core_class_I cat 99.4 8.2E-13 1.8E-17 146.9 6.8 103 149-260 18-128 (353)
67 cd00671 ArgRS_core catalytic c 99.3 1.8E-12 3.9E-17 135.7 9.0 93 152-261 2-94 (212)
68 cd07375 Anticodon_Ia_like Anti 99.3 6.3E-11 1.4E-15 110.8 13.7 116 564-687 2-117 (117)
69 COG0215 CysS Cysteinyl-tRNA sy 99.2 1.6E-10 3.5E-15 130.3 15.7 182 428-641 176-370 (464)
70 cd00802 class_I_aaRS_core cata 99.2 4.7E-11 1E-15 117.1 8.8 76 155-244 2-77 (143)
71 PRK00750 lysK lysyl-tRNA synth 99.0 2.3E-10 5E-15 134.2 5.1 105 149-260 22-134 (510)
72 KOG2007 Cysteinyl-tRNA synthet 98.9 1.2E-07 2.6E-12 106.0 22.3 203 429-655 214-431 (586)
73 PRK12451 arginyl-tRNA syntheta 98.7 3.1E-06 6.7E-11 101.1 26.8 136 539-684 412-555 (562)
74 COG0018 ArgS Arginyl-tRNA synt 98.6 1E-05 2.3E-10 95.8 26.9 141 537-684 419-570 (577)
75 TIGR00467 lysS_arch lysyl-tRNA 98.6 4.4E-08 9.6E-13 114.5 6.3 96 150-251 18-121 (515)
76 PF01406 tRNA-synt_1e: tRNA sy 98.0 1E-05 2.2E-10 87.7 7.7 84 151-250 10-93 (300)
77 PF06827 zf-FPG_IleRS: Zinc fi 98.0 3.5E-07 7.6E-12 64.9 -2.7 30 839-868 1-30 (30)
78 PF00750 tRNA-synt_1d: tRNA sy 97.6 0.00022 4.7E-09 80.7 9.3 58 148-205 18-75 (354)
79 PLN02286 arginine-tRNA ligase 97.4 0.00054 1.2E-08 82.2 9.6 139 539-684 423-569 (576)
80 cd09287 GluRS_non_core catalyt 97.0 0.00087 1.9E-08 71.1 5.6 72 157-260 6-77 (240)
81 TIGR00463 gltX_arch glutamyl-t 96.6 0.0027 5.8E-08 75.1 6.2 75 152-260 93-167 (560)
82 PRK04156 gltX glutamyl-tRNA sy 96.5 0.003 6.4E-08 74.9 5.5 76 153-260 102-177 (567)
83 PLN03233 putative glutamate-tR 96.5 0.0042 9.1E-08 72.8 6.3 74 153-260 12-85 (523)
84 TIGR03838 queuosine_YadB gluta 96.3 0.0047 1E-07 67.0 5.3 67 158-258 6-73 (272)
85 PF00749 tRNA-synt_1c: tRNA sy 96.3 0.0038 8.1E-08 69.5 4.3 69 158-260 7-76 (314)
86 PLN02907 glutamate-tRNA ligase 96.3 0.0052 1.1E-07 75.3 5.9 74 153-260 214-287 (722)
87 cd00418 GlxRS_core catalytic c 96.2 0.0061 1.3E-07 64.5 5.4 69 157-259 6-75 (230)
88 PTZ00402 glutamyl-tRNA synthet 96.2 0.006 1.3E-07 72.4 5.7 74 153-260 53-127 (601)
89 cd00807 GlnRS_core catalytic c 96.1 0.01 2.2E-07 62.9 6.4 70 157-260 6-75 (238)
90 PTZ00437 glutaminyl-tRNA synth 96.0 0.011 2.3E-07 69.7 6.3 72 153-258 52-123 (574)
91 COG0008 GlnS Glutamyl- and glu 95.9 0.008 1.7E-07 69.9 4.8 74 153-260 10-84 (472)
92 TIGR00440 glnS glutaminyl-tRNA 95.9 0.012 2.5E-07 69.2 5.9 70 157-260 5-75 (522)
93 PLN02859 glutamine-tRNA ligase 95.8 0.014 3E-07 71.1 6.1 74 153-260 265-338 (788)
94 TIGR00464 gltX_bact glutamyl-t 95.7 0.014 3E-07 68.5 5.5 70 157-260 6-76 (470)
95 PRK14895 gltX glutamyl-tRNA sy 95.6 0.016 3.5E-07 67.9 5.9 72 155-260 7-79 (513)
96 PRK05347 glutaminyl-tRNA synth 95.6 0.015 3.3E-07 68.4 5.6 74 153-260 30-104 (554)
97 cd00808 GluRS_core catalytic c 95.5 0.022 4.8E-07 60.7 5.7 26 157-182 6-31 (239)
98 PRK12410 glutamylglutaminyl-tR 95.3 0.02 4.4E-07 65.9 5.3 69 158-260 5-73 (433)
99 PRK05710 glutamyl-Q tRNA(Asp) 95.3 0.022 4.7E-07 62.7 5.3 71 155-259 8-79 (299)
100 PRK14703 glutaminyl-tRNA synth 95.2 0.024 5.1E-07 69.7 5.7 74 153-260 32-106 (771)
101 PRK12558 glutamyl-tRNA synthet 95.0 0.041 8.8E-07 63.8 6.6 66 157-256 7-72 (445)
102 cd00668 Ile_Leu_Val_MetRS_core 94.9 0.021 4.6E-07 63.5 3.7 53 469-536 114-166 (312)
103 PLN02627 glutamyl-tRNA synthet 94.7 0.039 8.5E-07 64.9 5.4 68 153-254 46-113 (535)
104 PRK01406 gltX glutamyl-tRNA sy 93.8 0.075 1.6E-06 62.5 5.3 67 155-255 7-73 (476)
105 PF01921 tRNA-synt_1f: tRNA sy 93.4 0.03 6.5E-07 62.7 1.0 98 148-251 21-127 (360)
106 PRK12267 methionyl-tRNA synthe 92.5 0.13 2.8E-06 63.2 4.8 60 470-529 104-178 (648)
107 COG1384 LysS Lysyl-tRNA synthe 91.2 0.41 8.9E-06 55.6 6.6 98 150-251 19-124 (521)
108 cd07956 Anticodon_Ia_Arg Antic 91.0 2.3 5.1E-05 42.2 11.1 136 540-684 2-149 (156)
109 KOG1195 Arginyl-tRNA synthetas 84.1 4.4 9.6E-05 47.0 9.0 67 126-193 87-153 (567)
110 PRK12285 tryptophanyl-tRNA syn 82.6 4.1 9E-05 46.4 8.1 77 149-254 64-140 (368)
111 PLN02286 arginine-tRNA ligase 79.4 30 0.00065 42.1 14.4 57 149-205 116-172 (576)
112 PLN02563 aminoacyl-tRNA ligase 79.3 2.1 4.6E-05 54.6 4.8 67 469-536 212-292 (963)
113 PLN02486 aminoacyl-tRNA ligase 76.5 9.6 0.00021 43.7 8.6 75 148-248 70-145 (383)
114 cd00806 TrpRS_core catalytic c 76.3 6.3 0.00014 43.3 6.8 69 160-255 7-75 (280)
115 cd00805 TyrRS_core catalytic c 76.1 3.8 8.3E-05 44.7 5.1 71 160-250 8-82 (269)
116 cd00395 Tyr_Trp_RS_core cataly 75.6 4.4 9.5E-05 44.3 5.4 71 161-248 8-79 (273)
117 cd00814 MetRS_core catalytic c 75.3 3.1 6.7E-05 46.5 4.2 62 471-535 101-165 (319)
118 TIGR00396 leuS_bact leucyl-tRN 75.2 2.8 6E-05 53.1 4.2 68 469-536 130-212 (842)
119 KOG1148 Glutaminyl-tRNA synthe 72.5 1.7 3.7E-05 51.0 1.2 20 152-171 248-267 (764)
120 PRK00133 metG methionyl-tRNA s 71.5 2.8 6.2E-05 51.8 3.0 34 495-528 170-203 (673)
121 KOG1147 Glutamyl-tRNA syntheta 71.5 2.9 6.2E-05 48.7 2.7 67 153-251 201-267 (712)
122 KOG4426 Arginyl-tRNA synthetas 69.5 4.2 9.1E-05 46.2 3.4 59 149-208 187-250 (656)
123 PLN02610 probable methionyl-tR 64.0 5.6 0.00012 50.0 3.4 42 488-529 181-222 (801)
124 COG0495 LeuS Leucyl-tRNA synth 63.0 6.8 0.00015 48.9 3.8 66 471-536 137-217 (814)
125 PRK00390 leuS leucyl-tRNA synt 60.9 8.1 0.00018 48.8 4.1 62 469-530 133-208 (805)
126 cd00812 LeuRS_core catalytic c 57.3 8.3 0.00018 43.0 3.0 56 469-536 101-158 (314)
127 PF05746 DALR_1: DALR anticodo 56.3 96 0.0021 28.7 9.7 79 602-684 32-112 (119)
128 PRK05912 tyrosyl-tRNA syntheta 56.2 22 0.00047 41.3 6.2 41 150-195 32-73 (408)
129 COG2260 Predicted Zn-ribbon RN 52.3 6 0.00013 32.5 0.6 30 838-875 4-33 (59)
130 PF01406 tRNA-synt_1e: tRNA sy 50.2 12 0.00026 41.3 2.7 103 460-570 187-299 (300)
131 cd00817 ValRS_core catalytic c 49.8 2.7 5.9E-05 48.2 -2.4 40 517-561 342-382 (382)
132 TIGR00234 tyrS tyrosyl-tRNA sy 48.5 15 0.00033 42.1 3.4 45 151-201 30-75 (377)
133 KOG0435 Leucyl-tRNA synthetase 47.5 9.4 0.0002 45.9 1.4 60 471-530 160-234 (876)
134 PLN02886 aminoacyl-tRNA ligase 45.8 38 0.00083 38.9 6.0 30 161-194 55-84 (389)
135 cd00672 CysRS_core catalytic c 45.0 10 0.00023 39.8 1.2 29 534-562 185-213 (213)
136 PRK08560 tyrosyl-tRNA syntheta 41.8 23 0.0005 39.8 3.4 41 150-195 29-69 (329)
137 PRK12284 tryptophanyl-tRNA syn 41.2 53 0.0012 38.2 6.2 36 161-199 11-46 (431)
138 cd00674 LysRS_core_class_I cat 40.8 23 0.00051 40.2 3.3 45 534-579 286-331 (353)
139 PF00579 tRNA-synt_1b: tRNA sy 39.8 25 0.00055 38.6 3.3 41 150-195 4-44 (292)
140 KOG1779 40s ribosomal protein 38.9 5.9 0.00013 34.3 -1.4 29 840-869 35-63 (84)
141 PRK12283 tryptophanyl-tRNA syn 38.5 65 0.0014 37.1 6.3 61 161-248 11-72 (398)
142 KOG2145 Cytoplasmic tryptophan 37.5 31 0.00067 37.6 3.3 27 148-174 82-108 (397)
143 PRK00927 tryptophanyl-tRNA syn 37.4 25 0.00055 39.6 2.9 31 160-194 9-39 (333)
144 TIGR00467 lysS_arch lysyl-tRNA 35.9 36 0.00078 40.7 3.9 43 538-581 289-331 (515)
145 PRK13354 tyrosyl-tRNA syntheta 35.5 65 0.0014 37.4 5.9 42 149-195 31-73 (410)
146 COG0162 TyrS Tyrosyl-tRNA synt 32.5 1E+02 0.0022 35.7 6.6 36 161-201 41-77 (401)
147 PF04918 DltD_M: DltD central 29.8 2.2E+02 0.0048 28.5 7.9 102 500-629 23-126 (163)
148 TIGR00233 trpS tryptophanyl-tR 28.9 40 0.00087 37.9 2.7 38 153-195 4-41 (328)
149 PRK00750 lysK lysyl-tRNA synth 28.8 49 0.0011 39.6 3.5 42 537-580 294-336 (510)
150 COG0180 TrpS Tryptophanyl-tRNA 28.6 49 0.0011 36.9 3.2 40 150-194 4-44 (314)
151 PRK12556 tryptophanyl-tRNA syn 26.6 62 0.0013 36.5 3.6 32 161-194 12-43 (332)
152 PF04135 Nop10p: Nucleolar RNA 25.9 19 0.00042 29.2 -0.4 27 840-874 6-32 (53)
153 COG5273 Uncharacterized protei 24.9 31 0.00067 38.5 0.8 31 838-871 108-138 (309)
154 PTZ00126 tyrosyl-tRNA syntheta 24.3 59 0.0013 37.4 3.0 42 150-195 65-106 (383)
155 PF13248 zf-ribbon_3: zinc-rib 20.6 64 0.0014 22.0 1.4 21 840-866 3-23 (26)
No 1
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-164 Score=1454.00 Aligned_cols=711 Identities=45% Similarity=0.797 Sum_probs=644.3
Q ss_pred cCccccccCCCCCCCCCCCccccchHHHHHHHhCCCcccccc--CCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHH
Q 002784 104 GRYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVAD--KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINR 181 (881)
Q Consensus 104 ~~~~~tl~lp~t~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~--~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~R 181 (881)
++|++|||||+|.||||+|++++|++++++|+++++|++..+ +.++++|++|||||||||.+|||||+|+||||||.|
T Consensus 1 ~~~k~tl~lp~T~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~R 80 (933)
T COG0060 1 MDYKDTLNLPKTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVR 80 (933)
T ss_pred CCccccccCccCCCCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhh
Confidence 368999999999999999999999999999999999999873 457899999999999999999999999999999999
Q ss_pred HHHhCCCeeeeccCcCCCCcHHHHHHHHhcccc--cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCC
Q 002784 182 YKLLQNYKVRYVPGWDCHGLPIELKVLQSLDED--AKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTL 259 (881)
Q Consensus 182 y~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~--~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~ 259 (881)
|++|+||+|.|+|||||||||||.+++++++.. ...+++.++|+++|++||.++++.|+++|+|||+++||+++|.||
T Consensus 81 y~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tm 160 (933)
T COG0060 81 YKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTM 160 (933)
T ss_pred hhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecC
Confidence 999999999999999999999999999999852 234578899999999999999999999999999999999999999
Q ss_pred ccchhhce------------------------------------ecCCceeceeeeEeeecCCCCCcccccccccCCceE
Q 002784 260 DPEYEAAQ------------------------------------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGL 303 (881)
Q Consensus 260 dp~y~~~q------------------------------------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~~l 303 (881)
|++|++.| |.+ +.|+|+||+|++.+.. ...+.++
T Consensus 161 d~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d-~~dpSIyV~F~v~~~~---------~~~~~~l 230 (933)
T COG0060 161 DPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGD-VKDPSIYVKFPVKDEG---------LDENAYL 230 (933)
T ss_pred CHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccc-cCCceEEEEEEeccCC---------CCCCcEE
Confidence 99999986 434 7788888888887530 1257899
Q ss_pred EEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCc-eEE
Q 002784 304 AVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTK-LVI 382 (881)
Q Consensus 304 ~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~-~~i 382 (881)
+||||||||||||.||+||||.+|++|+.+ ++.||+|+++++++.+..|.+ +++
T Consensus 231 viWTTTPWTLPaN~aiav~pd~~Y~lv~~~-------------------------~~~~IlA~~lve~~~~~~~~~~~~v 285 (933)
T COG0060 231 VIWTTTPWTLPANLAIAVHPDLDYVLVEVN-------------------------GEKLILAKALVESVAKKAGVEDYEV 285 (933)
T ss_pred EEEeCCCCCchhcceeEeCCCcceEEEEEC-------------------------CEEEEEhHHHHHHHHHHcCCcceEE
Confidence 999999999999999999999999999986 589999999999999999887 899
Q ss_pred EEecccccccCCEeecCCCC----CCcceeecCccccccCCCCceecCCCCChhHHHHHHHhC-CCceeccCCCCccccc
Q 002784 383 KKTLAGSDLENCRYVHPVDN----RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYG-LPILSPVDDEGKFTEE 457 (881)
Q Consensus 383 ~~~~~G~~L~g~~~~~Pl~~----~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~g-L~~~~~vd~~G~~~~~ 457 (881)
+.+++|++|+|+.|.|||.. +..|| +.+|||+.+.|||+||+|||||+|||.+|+++| +|+++|||++|+|+++
T Consensus 286 l~~~kG~~Leg~~y~hPf~~~~~~~~~~v-~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~ 364 (933)
T COG0060 286 LETFKGSELEGLRYEHPFYDFVYDRAFPV-ILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEE 364 (933)
T ss_pred eEEeehhhhCCCEeeCCcccccccceeeE-EecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCcccccc
Confidence 99999999999999999995 78898 679999999999999999999999999999999 7999999999999999
Q ss_pred cccCCCceeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhccccccCCC-
Q 002784 458 AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ- 536 (881)
Q Consensus 458 ~~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~- 536 (881)
++.|.|+.| ++||+.||+.|+++|.|++.+.|.|+||||||||+|||||+|+|||++|+++|+++++++++|+|+|++
T Consensus 365 ~~~~~G~~v-~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~~ 443 (933)
T COG0060 365 APKYEGLFV-KDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWG 443 (933)
T ss_pred chhhCCcee-ccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEChhH
Confidence 999999999 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 444 ~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~ 523 (933)
T COG0060 444 KNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYR 523 (933)
T ss_pred HHHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 524 rv~DvlDVWFDSGs~~~a~~~~~~~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKM 603 (933)
T COG0060 524 RVPDVLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKM 603 (933)
T ss_pred ecCcceEEEEcCCCCcccccCCcccccCccccCcEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCc
Confidence
Q ss_pred ------------CCCCCCCchHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCC-CccCCCCCCH
Q 002784 537 ------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG-NSISYDDLPM 603 (881)
Q Consensus 537 ------------~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~-~~~~~~~l~~ 603 (881)
++.+||||+||||++++++++|+.||+++++++.+.|++||||+||+++||++|+|. +.++..++..
T Consensus 604 SKSlGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~ 683 (933)
T COG0060 604 SKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRE 683 (933)
T ss_pred cccCCCcCCHHHHHHhhCchheeeeeeecCchhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcch
Confidence 235999999999999999999999999999999999999999999999999999997 3466678899
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 002784 604 IDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVI 683 (881)
Q Consensus 604 ~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lL 683 (881)
+|||||++|++++++++++|++|+|+++++.+++|++++||+|||+++|||+|++..++.+|+++|++|+++|.+++++|
T Consensus 684 ~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~l 763 (933)
T COG0060 684 LDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLL 763 (933)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCc
Q 002784 684 APILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSL 763 (881)
Q Consensus 684 aPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~R~~k~i~~sl 763 (881)
|||+||+|||||++|+.. ...+|||+.+||..++.+.+.+......|+.++++|..|+++++.+|.++.||.++
T Consensus 764 APilPftaEeiw~~l~~~------~~~eSVhl~~~p~~~~~~~~~~~~~~~r~~~~~k~R~~v~~~l~~~r~~~~I~~~l 837 (933)
T COG0060 764 APILPFTAEEIWQNLPGE------RKEESVHLEDWPEVDEELIDVEAALAARWEALLKLRDPVNKALEAARLEKVIGSSL 837 (933)
T ss_pred cccchhhHHHHHHhCccC------CCCceeEeccCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcc
Confidence 999999999999999764 11479999999998887765446677889999999999999999999999999999
Q ss_pred ceEEEEEeCChHHHHHHHHhhccCCchhHhhhhhhccceEEccCCCCCCccCCCCCCcccccCCccEEEEEEeCCCCCCC
Q 002784 764 EAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCE 843 (881)
Q Consensus 764 e~~v~I~~~~~~~~~~l~~l~~~~~~~~~L~~l~~vS~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~a~~~KC~ 843 (881)
+++++++.++ ...+..+ ..+|..+|++|.+.+....+...... ......+ .. +.+.+.+++|.||+
T Consensus 838 nak~~~~~~~---~~~~~~~------~~~l~~~~~~s~~~v~~~~~~~~~~~--~~~~~~~--~~-~~~~~~~~eg~~c~ 903 (933)
T COG0060 838 NAKVVIYTED---SELLYKL------KPNLGKVLITSAVEVAKALEALAGAE--AEELVDG--DG-VELTVEKAEGEKCP 903 (933)
T ss_pred eeEEEEeecc---hhhhhhh------chhHHHHHhhhHHHHHhhhccccchh--hhhhhcc--cc-eeEEEEeccCCcCC
Confidence 9999999865 2223333 24699999999888765321111000 0000000 11 78899999999999
Q ss_pred CccceecCCCCCCCCCCCChhhHHHhcc
Q 002784 844 RCWNYSTQVGSFVEHPTLCSRCYEVLAV 871 (881)
Q Consensus 844 RCW~~~~~v~~~~~~~~lC~RC~~vl~~ 871 (881)
|||+|..++|....++.||.||+.+|..
T Consensus 904 r~~~~~~~~~~~~~~e~l~~~~v~~iq~ 931 (933)
T COG0060 904 RCWHYDTELGEELEEEGLCRRCVRRIQE 931 (933)
T ss_pred eEEEEcCcCCcccccchHHHHHHHHHhh
Confidence 9999999999999999999999999863
No 2
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.8e-151 Score=1393.95 Aligned_cols=730 Identities=38% Similarity=0.668 Sum_probs=638.2
Q ss_pred ccCccccccCCCCCCCCCCCccccchHHHHHHHhCCCccccccC-CCCCceEEecCCCCCCCcccchHHHHHHHHHHHHH
Q 002784 103 EGRYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADK-NDGENFVLHDGPPYANGNLHMGHALNKILKDIINR 181 (881)
Q Consensus 103 ~~~~~~tl~lp~t~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~~-~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~R 181 (881)
+++||+|||||||+||||+|++++|++||++|+++++|++..+. .++++|+||||||||||.||||||+|+|++||++|
T Consensus 6 ~~~y~~tl~lp~t~f~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~R 85 (961)
T PRK13804 6 AMDYKKTLNLPQTAFPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVR 85 (961)
T ss_pred cCchHhhcCCCCCCCCCCCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999987542 46788999999999999999999999999999999
Q ss_pred HHHhCCCeeeeccCcCCCCcHHHHHHHHhccc--ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCC
Q 002784 182 YKLLQNYKVRYVPGWDCHGLPIELKVLQSLDE--DAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTL 259 (881)
Q Consensus 182 y~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~--~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~ 259 (881)
|+||+||+|+|+|||||||||||.++++.++. ..+.++++.+|+++|++||.++++.|++||+|||+++||+|+|.||
T Consensus 86 y~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~ 165 (961)
T PRK13804 86 SKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTM 165 (961)
T ss_pred HHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcC
Confidence 99999999999999999999999999988732 2245689999999999999999999999999999999999999999
Q ss_pred ccchhhce-------ecCCceeceeeeEeeecCCCCCccccccc----------------c-c--------CCceEEEec
Q 002784 260 DPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNE----------------F-L--------PDLGLAVWT 307 (881)
Q Consensus 260 dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~----------------~-~--------~~~~l~iwT 307 (881)
||.|+++| |++|+ +|.+.+.++||+.+.+.|.+ | + .+.+++|||
T Consensus 166 d~~y~~~~~~~F~~l~~kGl----iyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~~~v~F~~~~~~~~~~~~~~lviwT 241 (961)
T PRK13804 166 DFHAEARIAREFGKFAAKGQ----LYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIWT 241 (961)
T ss_pred CHHHHHHHHHHHHHHHHCCC----EEeCCcceecCCCCCCCccchhcccccccCceEEEEEEecCcccccCCCCeEEEEe
Confidence 99999986 55555 34444444555444433321 0 0 236899999
Q ss_pred CccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCC-ceEEEEec
Q 002784 308 TTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGT-KLVIKKTL 386 (881)
Q Consensus 308 TtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~-~~~i~~~~ 386 (881)
|||||||||+||||||+.+|++|+.++...+- . ...++.+|||+++++.+..+.+. .++++.++
T Consensus 242 TtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~--------------~-~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~ 306 (961)
T PRK13804 242 TTPWTIPANRAISYSPDIEYGLYEVTGAENDF--------------W-AKPGERLVVADALAESVAKKAGVESFERLADV 306 (961)
T ss_pred CCchhhhhCeEEEECCCCceEEEEeccccccc--------------c-ccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEE
Confidence 99999999999999999999999874200000 0 00136899999999999988766 47899999
Q ss_pred ccccccCCEeecCCCCC-----CcceeecCccccccCCCCceecCCCCChhHHHHHHHhCC-CceeccCCCCcccccccc
Q 002784 387 AGSDLENCRYVHPVDNR-----QCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL-PILSPVDDEGKFTEEAGK 460 (881)
Q Consensus 387 ~G~~L~g~~~~~Pl~~~-----~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL-~~~~~vd~~G~~~~~~~~ 460 (881)
+|++|.|++|.||++++ .+|| |+++||++++|||+||+|||||++||.++++||| |++++||++|+|++++++
T Consensus 307 ~g~~L~g~~~~~P~~~~~~~~~~~pv-i~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~~~ 385 (961)
T PRK13804 307 KGEDLEKIVCAHPLDGLDGYEFEVPV-LDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPG 385 (961)
T ss_pred EhhhccCCEEECCCCCcccccceeEE-EecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCCCc
Confidence 99999999999999998 8998 7899999999999999999999999999999999 999999999999988777
Q ss_pred --------CCCceeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhh-------HHHHHHH
Q 002784 461 --------FSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEG-------FRQAAMD 525 (881)
Q Consensus 461 --------~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~-------lk~~al~ 525 (881)
|.|+.+ .+|++.|++.|++.|.+++.+.|.|+||||||||+|||+|+|+|||+++++ +|+++++
T Consensus 386 ~~g~~v~~~~G~~~-~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~ 464 (961)
T PRK13804 386 FGGARVIDDEGKKY-GDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALD 464 (961)
T ss_pred cccccccccCCcch-hhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHH
Confidence 788888 599999999999999999999999999999999999999999999999998 9999999
Q ss_pred hhccccccCCC---------------------------------------------------------------------
Q 002784 526 AIGQVKWVPPQ--------------------------------------------------------------------- 536 (881)
Q Consensus 526 ~i~~v~~~P~~--------------------------------------------------------------------- 536 (881)
++++|+|+|++
T Consensus 465 ~i~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~ 544 (961)
T PRK13804 465 AIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAEDGEILMDEEVNARIADAFEEEGADAWFAEGAKERFL 544 (961)
T ss_pred HHhccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcCCCCEeccHHHHHHHHHHHHhcCCccccccCHHHhcC
Confidence 99999999987
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 545 ~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~~~~~~~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vl 624 (961)
T PRK13804 545 GGFHPNGEFTKVTDILDVWFDSGSTHAFVLEDRPDLKWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTL 624 (961)
T ss_pred cccCcccceEecCcceeeeecCCCCccccccCCcccCCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEE
Confidence
Q ss_pred -------------------CCCCCCCchHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCC-cc
Q 002784 537 -------------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGN-SI 596 (881)
Q Consensus 537 -------------------~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~-~~ 596 (881)
++++||||+||||++++++++|++|++++++++++.++||||++||+++|+.+|++.. .+
T Consensus 625 d~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~ 704 (961)
T PRK13804 625 DEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVV 704 (961)
T ss_pred CCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccC
Confidence 2349999999999999999999999999999999999999999999999999987652 33
Q ss_pred CCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHH
Q 002784 597 SYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHL 676 (881)
Q Consensus 597 ~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il 676 (881)
+..++..+|+|+++++++++++++++|++|+|++|++.+++|++++|||+||+.+|||||++..++..|++++++|+++|
T Consensus 705 ~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il 784 (961)
T PRK13804 705 AYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIF 784 (961)
T ss_pred ChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 002784 677 LSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTG 756 (881)
Q Consensus 677 ~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~R~~ 756 (881)
+.+++||||||||+|||||++|+.. ..+||+++.||++++.+.+ ++++..|+.++.+|..|++++|.+|++
T Consensus 785 ~~l~~lLaPi~P~~aEeiw~~L~~~-------~~~sv~l~~wP~~~~~~~d--~~~~~~~~~~~~~r~~v~~~le~~R~~ 855 (961)
T PRK13804 785 VRLTKWLAPILPFTAEEAWLYRYPE-------EEVSVHLEQFPETPAFWRD--DALAEKWRKFRAVRDVVTGALEEERAA 855 (961)
T ss_pred HHHHHHHHhhhhhhHHHHHHhcccC-------CCCceEecCCCCCcchhCC--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999741 1369999999998877765 667778999999999999999999999
Q ss_pred CcCCCCcceEEEEEeCChHHHHHHHHhhccCCchhHhhhhhhccceEEccCCCCCCccCCCCCCcccccCCccEEEEEEe
Q 002784 757 KLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSR 836 (881)
Q Consensus 757 k~i~~sle~~v~I~~~~~~~~~~l~~l~~~~~~~~~L~~l~~vS~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 836 (881)
+.||+++++.|+|++++....+.|+.+ +|+++|+||+|++.... .+.. .+..+...++.|.|.+
T Consensus 856 ~~i~~~~e~~v~l~~~~~~~~~~l~~~--------~l~~~~~vs~~~~~~~~-~~~~-------~~~~~~~~~~~~~v~~ 919 (961)
T PRK13804 856 KRIGSSLEAAPTVYIADPELLAALEGL--------DFAEICITSQLTVAAGE-APAD-------AFRLDEVEGVAVVVEK 919 (961)
T ss_pred CCCCCCcceeEEEEcCCHHHHHHHHHH--------HHHHHhhhCceEEecCC-Ccch-------hhcccccCceEEEEEe
Confidence 999999999999987664444555431 59999999999996411 0000 0000112357889999
Q ss_pred CCCCCCCCccceecCCCCCCCCCCCChhhHHHhccCCccccc
Q 002784 837 AEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIPSMA 878 (881)
Q Consensus 837 a~~~KC~RCW~~~~~v~~~~~~~~lC~RC~~vl~~~~~~~~~ 878 (881)
+.++||||||+|++++|.+++|++||.||.+||...+|+|++
T Consensus 920 ~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~~~~~~~~~~~ 961 (961)
T PRK13804 920 AEGEKCARSWRITPDVGSDPYYPDVSPRDAKALREWKALAVA 961 (961)
T ss_pred CCCCCCcCCCCCcCCcCCCCCCCCcChhHHHHHHhhhhccCC
Confidence 999999999999999999888999999999999988888875
No 3
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=5.4e-150 Score=1384.15 Aligned_cols=758 Identities=74% Similarity=1.242 Sum_probs=650.5
Q ss_pred CCCCccccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCC
Q 002784 119 MRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDC 198 (881)
Q Consensus 119 ~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~ 198 (881)
||+|++++|++||++|+++++|++..+.+.+++|+||+|||||||.||||||+|++++|+++||+||+||+|+|+|||||
T Consensus 1 m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~ 80 (974)
T PLN02843 1 MRANSVTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDC 80 (974)
T ss_pred CCCChHHhhHHHHHHHHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCC
Confidence 89999999999999999999999875544567899999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-----------
Q 002784 199 HGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ----------- 267 (881)
Q Consensus 199 hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q----------- 267 (881)
||||||.+++++++.+.+.+++|++|+++|++|+.++++.|+++|+|||+++||+++|+||||+|++++
T Consensus 81 hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~G 160 (974)
T PLN02843 81 HGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNG 160 (974)
T ss_pred CCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 999999999999875556789999999999999999999999999999999999999999999999986
Q ss_pred -------------------------ecCCceeceeeeEeeecCCCCCcccccccccCCceEEEecCccccccccceeeeC
Q 002784 268 -------------------------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVN 322 (881)
Q Consensus 268 -------------------------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~~l~iwTTtPwTl~an~av~v~ 322 (881)
|.+++.++++|++|++.+........+.....+.+++||||||||||||+|||||
T Consensus 161 lIyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVn 240 (974)
T PLN02843 161 YIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVN 240 (974)
T ss_pred CEEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEEC
Confidence 6666778888888888653211110111111236999999999999999999999
Q ss_pred CCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecccccccCCEeecCCCC
Q 002784 323 AKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDN 402 (881)
Q Consensus 323 p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~ 402 (881)
|+.+|++|+.++...+.-.......+++|..+...+++.+||++++++.+.+.++.+++++.+++|++|+|++|.|||++
T Consensus 241 P~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~ 320 (974)
T PLN02843 241 DKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYN 320 (974)
T ss_pred CCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCC
Confidence 99999999875210000001112333455555444467899999999999988887899999999999999999999999
Q ss_pred CCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccCCCceeccchhHHHHHHHHhcC
Q 002784 403 RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQM 482 (881)
Q Consensus 403 ~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g 482 (881)
+++||+++++||++++|||+||+|||||++||.++++|||+++++||++|+|++++|+|.|+.|+.+||+.|++.|+++|
T Consensus 321 ~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g 400 (974)
T PLN02843 321 RESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAG 400 (974)
T ss_pred CceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCC
Confidence 99999667999999999999999999999999999999999999999999999999999999996689999999999999
Q ss_pred CccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhccccccCCC--------------------------
Q 002784 483 SLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ-------------------------- 536 (881)
Q Consensus 483 ~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~-------------------------- 536 (881)
.+++.+.+.|+|||||||++|||+|+|+|||++++.+|+++++++++|+|+|++
T Consensus 401 ~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~p 480 (974)
T PLN02843 401 SLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVP 480 (974)
T ss_pred CeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccEEEChHHHHHHHHHHhcCcceeeeeccccccE
Confidence 999999999999999999999999999999999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 481 IP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~~~~ 560 (974)
T PLN02843 481 IPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGSREG 560 (974)
T ss_pred EEEEEEcCCCCEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhccccc
Confidence
Q ss_pred ----------------------------------------------------------------CCC---------CCCC
Q 002784 537 ----------------------------------------------------------------EAP---------GYGA 543 (881)
Q Consensus 537 ----------------------------------------------------------------~~~---------~yGa 543 (881)
++. +|||
T Consensus 561 ~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGa 640 (974)
T PLN02843 561 LSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGA 640 (974)
T ss_pred cCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccCh
Confidence 123 6999
Q ss_pred chHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHH
Q 002784 544 DVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESY 623 (881)
Q Consensus 544 D~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~y 623 (881)
|+||||+++++|++|++|+++.++++++.++||||++||+++|+.+|++...++..++..+|+|++++|++++++++++|
T Consensus 641 D~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~ay 720 (974)
T PLN02843 641 DVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESY 720 (974)
T ss_pred HHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764334455677899999999999999999999
Q ss_pred hccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCcccc
Q 002784 624 ESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYT 703 (881)
Q Consensus 624 e~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~ 703 (881)
++|+|++|++.|++|++.+|||+||+.+|||+|++..++..|+++|++|+++++.+++||||||||+|||||++|+..
T Consensus 721 e~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~-- 798 (974)
T PLN02843 721 DNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQ-- 798 (974)
T ss_pred HccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcccc--
Confidence 999999999999999999999999999999999988778888999999999999999999999999999999999742
Q ss_pred ccCCCCCcceeecCCCCcchhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCcceEEEEEeCChHHHHHHHHh
Q 002784 704 LEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREM 783 (881)
Q Consensus 704 ~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~R~~k~i~~sle~~v~I~~~~~~~~~~l~~l 783 (881)
.++...+|||++.||++++.+.+.+.++...|+.++++|.+|++++|.+|+++.|++++++.|+|+.+++...+.|+.+
T Consensus 799 -~~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~l~~~r~~~~i~~~~~~~v~l~~~~~~~~~~l~~~ 877 (974)
T PLN02843 799 -EDGSAAESVFEAGWPTPNEEWLSFPAEDVDFWSLLLEVRDEVNKVLESARNGKLIGASLEAKVYLHASDASLAARLAEL 877 (974)
T ss_pred -ccCCCCCceEecCCCCCchhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccceeEEEEeCCHHHHHHHHhh
Confidence 0011136999999999887775433445567999999999999999999999999999999999988665566667664
Q ss_pred hccCCchhHhhhhhhccceEEccCCCCCCccCCCCCCcccccCCccEEEEEEeCCCCCCCCccceecCCCCCCCCCCCCh
Q 002784 784 CTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCS 863 (881)
Q Consensus 784 ~~~~~~~~~L~~l~~vS~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~a~~~KC~RCW~~~~~v~~~~~~~~lC~ 863 (881)
+...+..++|+++|+||+|++.............+.+.+. ++..++.|.|.+++|+||||||+|+++||.+++|++||.
T Consensus 878 ~~~~~~~~~l~~l~~vs~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~kC~RCW~~~~~~~~~~~~~~lC~ 956 (974)
T PLN02843 878 CGASNGADELRRIFITSQVEVVSSEDDETAACGSYTGEYV-EGAGRVWVGVSRADGSKCERCWNYSPAVGSFSDHPTLCE 956 (974)
T ss_pred ccccchHHHHHHHhccCceEeecCCCccccccchhccccc-cccCceEEEEEeCCCCCCCCCCCEeCCcCCCCCCCCcCh
Confidence 3222334789999999999996421110000000000000 112357899999999999999999999999889999999
Q ss_pred hhHHHhccCCccccccC
Q 002784 864 RCYEVLAVQPIPSMAAV 880 (881)
Q Consensus 864 RC~~vl~~~~~~~~~~~ 880 (881)
||.+||..+||++++|.
T Consensus 957 rc~~~~~~~~~~~~~~~ 973 (974)
T PLN02843 957 RCYPVVIAQPPPLAAAA 973 (974)
T ss_pred hhHHHHcCCCCcccccC
Confidence 99999999999988764
No 4
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-148 Score=1368.53 Aligned_cols=706 Identities=47% Similarity=0.837 Sum_probs=628.7
Q ss_pred cCccccccCCCCCCCCCCCccccchHHHHHHHhCCCcccccc-CCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHH
Q 002784 104 GRYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRY 182 (881)
Q Consensus 104 ~~~~~tl~lp~t~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~-~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry 182 (881)
++||+|||||||+||||+|+.++|++||++|+++++|++..+ +.++++|+||+|||||||.||||||+|++++||++||
T Consensus 2 ~~y~~tl~lp~t~f~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry 81 (912)
T PRK05743 2 MDYKDTLNLPKTDFPMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKS 81 (912)
T ss_pred CChHhhcCCCCCCCCCCCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999998643 3467889999999999999999999999999999999
Q ss_pred HHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccc
Q 002784 183 KLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPE 262 (881)
Q Consensus 183 ~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~ 262 (881)
+||+||+|+|+|||||||||||.+|+|+++.+ +.+++|++|+++|++|+.++++.|+++|++||+++||+++|+||||.
T Consensus 82 ~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~-~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~ 160 (912)
T PRK05743 82 KTMSGFDAPYVPGWDCHGLPIELKVEKKLGKK-GKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFK 160 (912)
T ss_pred HHccCCcccCCCCcCCCccHhHHHHHHHcCCc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHH
Confidence 99999999999999999999999999987633 46899999999999999999999999999999999999999999999
Q ss_pred hhhce-------ecCCceeceeeeEeeecCCCCCccccccc----------------c-c---------CCceEEEecCc
Q 002784 263 YEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNE----------------F-L---------PDLGLAVWTTT 309 (881)
Q Consensus 263 y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~----------------~-~---------~~~~l~iwTTt 309 (881)
|++++ |++|++ |.+.+.+.||+.+.+.|.+ | + .+.+++|||||
T Consensus 161 ~~~~v~~~f~~l~~~Gli----y~~~~~v~w~p~~~TaLad~Evey~~~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTr 236 (912)
T PRK05743 161 YEANIIRALGKMAKKGYL----YKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTT 236 (912)
T ss_pred HHHHHHHHHHHHHHCCCE----EecceeEecCCCcCCCchhhHhhcccccCceEEEEEEecCcchhcccCCCEEEEEeCC
Confidence 99986 455553 3333334444443332211 0 0 23689999999
Q ss_pred cccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCC-ceEEEEeccc
Q 002784 310 PWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGT-KLVIKKTLAG 388 (881)
Q Consensus 310 PwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~-~~~i~~~~~G 388 (881)
|||||||+||||||+.+|++++.+ ++.||+|+++++++....+. +++++.+++|
T Consensus 237 P~Tl~~n~aiav~p~~~Y~~~~~~-------------------------~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G 291 (912)
T PRK05743 237 PWTLPANQAIAVHPEFDYVLVEVE-------------------------GEKLIVAKDLVESVLERFGWEDYEVLATFKG 291 (912)
T ss_pred ChhhhhCeEEEECCCCeeEEEEcC-------------------------CCEEEEeHHhHHHHHHhhCCcceEEEEEech
Confidence 999999999999999999999874 36899999999999988776 4889999999
Q ss_pred ccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccCCCceecc
Q 002784 389 SDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLG 468 (881)
Q Consensus 389 ~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~G~~v~~ 468 (881)
++|.|++|.||++++++|| ++++||++++|||+||+|||||++||.++++||||++++||++|+|++++|+|.|+++ .
T Consensus 292 ~~l~g~~~~~Pl~~~~~pv-i~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v-~ 369 (912)
T PRK05743 292 KELEGLVAQHPFYDRDSPV-ILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFV-F 369 (912)
T ss_pred HhhcCCEEECCCCCCeeeE-eCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCH-H
Confidence 9999999999999999999 7899999999999999999999999999999999999999999999999899999999 5
Q ss_pred chhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhh--HHHHHHHhhccccccCCC----------
Q 002784 469 DGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEG--FRQAAMDAIGQVKWVPPQ---------- 536 (881)
Q Consensus 469 ~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~--lk~~al~~i~~v~~~P~~---------- 536 (881)
+|++.|++.|+++|.+++.+.|.|+||||||||+|||||+++|||+++++ +|+.+++++++|+|+|++
T Consensus 370 ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~P~~~~~r~~~~i~ 449 (912)
T PRK05743 370 KANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAWGKNRIESMVE 449 (912)
T ss_pred HhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEEChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999997 999999999999999976
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 450 ~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg 529 (912)
T PRK05743 450 NRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSG 529 (912)
T ss_pred cCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhC
Confidence
Q ss_pred ----------------------------------------------------------------------------CCCC
Q 002784 537 ----------------------------------------------------------------------------EAPG 540 (881)
Q Consensus 537 ----------------------------------------------------------------------------~~~~ 540 (881)
++.+
T Consensus 530 ~s~~~~~~~~~~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~ 609 (912)
T PRK05743 530 SSHAAVLEQRPELGYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKK 609 (912)
T ss_pred CCHHHHhcCccccCCCceEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHh
Confidence 2359
Q ss_pred CCCchHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCC-CccCCCCCCHhHHHHHHHHHHHHHHH
Q 002784 541 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG-NSISYDDLPMIDQYALFQLENIVKNI 619 (881)
Q Consensus 541 yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~-~~~~~~~l~~~Dr~il~~l~~li~~v 619 (881)
||||+||||++++++++|++|+++.++++.+.++||||++||+++|+.+|.+. +.++..++..+|+|++++++++++++
T Consensus 610 yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v 689 (912)
T PRK05743 610 YGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEI 689 (912)
T ss_pred cChHHHHHHHHhcCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988754 23334456789999999999999999
Q ss_pred HHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCC
Q 002784 620 RESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLP 699 (881)
Q Consensus 620 ~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~ 699 (881)
+++|++|+|++|++.+++|++++||++|++.+|||||+...++..|++++++|+++|+.+++||||||||+|||||++|+
T Consensus 690 ~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~ 769 (912)
T PRK05743 690 LEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLP 769 (912)
T ss_pred HHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999987777788999999999999999999999999999999996
Q ss_pred ccccccCCCCCcceeecCCCCcchhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCcceEEEEEeCChHHHHH
Q 002784 700 FAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASR 779 (881)
Q Consensus 700 ~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~R~~k~i~~sle~~v~I~~~~~~~~~~ 779 (881)
.. ..+||++++||+.++.+.+ +++++.|+.++++|.+|+++++.+|+++.|++++++.|+|++++ +.
T Consensus 770 ~~-------~~~sv~~~~wP~~~~~~~~--~~~~~~~~~~~~~r~~v~~~i~~~r~~~~i~~~~~~~~~~~~~~----~~ 836 (912)
T PRK05743 770 GE-------REESVFLEEWPEVPELADD--EELLAKWEELLEVRDEVNKALEEARKEKVIGSSLEAEVTLYADA----AL 836 (912)
T ss_pred cC-------CCCceEEecCCCCccccCC--HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceEEEEEcCH----HH
Confidence 31 1369999999998887765 66778899999999999999999999999999999999998743 44
Q ss_pred HHHhhccCCchhHhhhhhhccceEEccCCCCCCccCCCCCCcccccCCccEEEEEEeCCCCCCCCccceecCCCCCCCCC
Q 002784 780 LREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHP 859 (881)
Q Consensus 780 l~~l~~~~~~~~~L~~l~~vS~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~a~~~KC~RCW~~~~~v~~~~~~~ 859 (881)
|..+ .++|+++|+||+|++... +.. . +..+...++.|.|.+++|+||||||+|..+||.+++++
T Consensus 837 l~~~------~~~l~~~~~vs~v~~~~~-~~~-~--------~~~~~~~~~~v~v~~~~~~kC~RCW~~~~~~~~~~~~~ 900 (912)
T PRK05743 837 LESL------GDELRFLLIVSQVEVADG-PAA-A--------AAAEEVEGLAVKVEKAEGEKCERCWHYREDVGSDAEHP 900 (912)
T ss_pred HHHH------HHHHHHHhhhCceEEecC-ccc-c--------ccccccCceEEEEEeCCCCCCCCcCCEeCCcCCCCCCC
Confidence 4443 268999999999999652 100 0 00011235789999999999999999999999888899
Q ss_pred CCChhhHHHhc
Q 002784 860 TLCSRCYEVLA 870 (881)
Q Consensus 860 ~lC~RC~~vl~ 870 (881)
+||.||.+||.
T Consensus 901 ~~C~rC~~~~~ 911 (912)
T PRK05743 901 TLCGRCVSNVE 911 (912)
T ss_pred CcChhHHHHhc
Confidence 99999999983
No 5
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-145 Score=1220.61 Aligned_cols=714 Identities=41% Similarity=0.659 Sum_probs=634.6
Q ss_pred hchhhccccccccCccccccCCCCCCCCCCCccccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHH
Q 002784 92 AKKAAEGEKKEEGRYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHAL 171 (881)
Q Consensus 92 ~~~~~~~~~~~~~~~~~tl~lp~t~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHal 171 (881)
.++.+...+.+...|+.|++|||| |+|.|...++.++++.|+...+...+....++..|++|| |||.||||||+
T Consensus 3 fk~~s~~~~~e~~~ys~T~~lpKt--~v~~Ns~gr~~q~~evi~~~~~~~~qls~~q~~~f~L~d----anG~lhlghal 76 (937)
T KOG0433|consen 3 FKDFSFEFNGEPIHYSITSHLPKT--LVHFNSTGRIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHAL 76 (937)
T ss_pred hhhcchhhcCCcccceeecCCCCC--ccccccccchHHHHHHhCChHHHHHHHhhccCceEEEec----cCCCccchHHH
Confidence 345555666778889999999999 999999999999999999988777666666788999999 99999999999
Q ss_pred HHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHH-HHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 002784 172 NKILKDIINRYKLLQNYKVRYVPGWDCHGLPIE-LKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWA 250 (881)
Q Consensus 172 n~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE-~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~ 250 (881)
|+||+|||.||+.++|++|+|+||||||||||| .+|++.+... ...++|.|+|++++.||++.|++|++.|+||||++
T Consensus 77 nkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~-~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~a 155 (937)
T KOG0433|consen 77 NKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTES-EGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTA 155 (937)
T ss_pred HHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhc-cccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeec
Confidence 999999999999999999999999999999999 6998877643 35789999999999999999999999999999999
Q ss_pred ccCCCccCCccchhhce------------------------------------ecCCceeceeeeEeeecCCCCCccccc
Q 002784 251 DWNNPYLTLDPEYEAAQ------------------------------------YPEGHVSRSIYAVFRMVSAPPSTSGLL 294 (881)
Q Consensus 251 DW~~~y~T~dp~y~~~q------------------------------------Y~~g~~s~siy~~f~~~~~~~~~~~~l 294 (881)
||+++|.||||+|+++| |+++|+|+|+|++|++.+.... ...+
T Consensus 156 DW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L~~~S~~-~~~~ 234 (937)
T KOG0433|consen 156 DWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSS-AHSE 234 (937)
T ss_pred cCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcCCcceeEEEEEeccCCccc-cccC
Confidence 99999999999999998 8999999999999999875432 1112
Q ss_pred ccccCCceEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHH
Q 002784 295 NEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEA 374 (881)
Q Consensus 295 ~~~~~~~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~ 374 (881)
....+++|++||||||||||+|.||++||+..|++|+.+.. ..++.++||+.+++.+..
T Consensus 235 ~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~---------------------~~~~~ylvas~L~~~fe~ 293 (937)
T KOG0433|consen 235 DSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNN---------------------PTSTFYLVASKLLEEFEK 293 (937)
T ss_pred CCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccC---------------------CcceEEEEccchhhhhhh
Confidence 33456799999999999999999999999999999998631 236899999999999999
Q ss_pred HhCCceEEEEecccccccCCEeecCCCC-CCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCc
Q 002784 375 KWGTKLVIKKTLAGSDLENCRYVHPVDN-RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGK 453 (881)
Q Consensus 375 ~~~~~~~i~~~~~G~~L~g~~~~~Pl~~-~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~ 453 (881)
..+.+.+++++++|.+|.|.+|.||+.+ ...|+ +.++||+++.|||+||+|||||++||.++.++|||+.++||+.|+
T Consensus 294 ~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~-l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~ 372 (937)
T KOG0433|consen 294 SSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPI-LEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGC 372 (937)
T ss_pred hcCcceeeeeecchhhccCceecCcCccccCCcc-ccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCCc
Confidence 9998999999999999999999999864 46898 779999999999999999999999999999999999999999999
Q ss_pred cccccc-cCCCceeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhccccc
Q 002784 454 FTEEAG-KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKW 532 (881)
Q Consensus 454 ~~~~~~-~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~ 532 (881)
||.++| .+.|+.|++++++.|+.+|. ..+++.+.|.|+||||||||+|+|+|+|+|||++++++|..|.+++++|+|
T Consensus 373 yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk~ 450 (937)
T KOG0433|consen 373 YTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVKV 450 (937)
T ss_pred eecccccccccchhhccccHhHHHHHh--hhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhcee
Confidence 999997 89999999999999999999 579999999999999999999999999999999999999999999999999
Q ss_pred cCCC----------------------------------------------------------------------------
Q 002784 533 VPPQ---------------------------------------------------------------------------- 536 (881)
Q Consensus 533 ~P~~---------------------------------------------------------------------------- 536 (881)
+|..
T Consensus 451 ~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e 530 (937)
T KOG0433|consen 451 APGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVRE 530 (937)
T ss_pred CCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhcc
Confidence 9977
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 531 ~~~~a~ey~kgtDimDVWFDSGssWs~v~~~~~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~ 610 (937)
T KOG0433|consen 531 IPDIASEYKKGTDIMDVWFDSGSSWSAVLDNEREHVADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDEN 610 (937)
T ss_pred cchhHHHhccCCceeeeEecCCCcceeecCCCCCcceeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecCC
Confidence
Q ss_pred ----------------------CCCCCCCchHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCC-
Q 002784 537 ----------------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG- 593 (881)
Q Consensus 537 ----------------------~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~- 593 (881)
..|.||||+||||||+++++.|+.+|+++|+++.+.+.|+|||+||++||+.+|++.
T Consensus 611 G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~ 690 (937)
T KOG0433|consen 611 GNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQ 690 (937)
T ss_pred ccchhhcccCcCCHHHHhCCcccCCCccccceeeeeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCcc
Confidence 246799999999999999999999999999999999999999999999999999987
Q ss_pred CccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHH
Q 002784 594 NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLS 673 (881)
Q Consensus 594 ~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~ 673 (881)
..+|..++..+|+++|.+|.++++++++.|++|+|+++++.+..|++++||++||+++||||||+..++..||++|++|.
T Consensus 691 ~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~ 770 (937)
T KOG0433|consen 691 VKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLH 770 (937)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 002784 674 AHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVA 753 (881)
Q Consensus 674 ~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~ 753 (881)
+++..++++|+||+||++||+||+||.. .+-+|...||..+..|.....++...|..++++|.+..+.++.+
T Consensus 771 h~l~~l~~~iaPIlP~LaeEvwq~lP~~--------~~~~f~~k~~~l~s~~~~~~~~~~~~~~~vl~~~~~~~~~l~la 842 (937)
T KOG0433|consen 771 HLLHNLAHIISPILPHLAEEVWQHLPGS--------HEKIFRLKWEDLHSGLLTPHDQLSKHMKFVLEVRNELESTLGLA 842 (937)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhCCCC--------CCcccccCccccchhhcCchhHHHHHHHHHHHHHHhHHHHHHhh
Confidence 9999999999999999999999999843 12399999999999998765555557889999999999999999
Q ss_pred hhcCcCCCCcceEEEEEeCChHHHHHHHHhhccCCchhHhhhhhhccceEEccCCCCCCccCCCCCCcccccCCc--cEE
Q 002784 754 RTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKD--KVW 831 (881)
Q Consensus 754 R~~k~i~~sle~~v~I~~~~~~~~~~l~~l~~~~~~~~~L~~l~~vS~V~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 831 (881)
+..+.+++.+++.+.+..+.. .+.+|++++.+|+|++....+. ... ...|... ...
T Consensus 843 ~~~~~~~s~L~~~~~~ht~~~--------------~~~~L~~~l~~~~~~~~~~~~~-~~~-------~~vE~~~~~~~~ 900 (937)
T KOG0433|consen 843 IDTSKKGSVLQVTPEYHTIRI--------------YESELPELLNVSQVILHENRDE-NSV-------ELVESRLRYCER 900 (937)
T ss_pred hhhhhccceEEEEEeeccccc--------------chhHHHHHHHHhhhhhhhhhcc-cch-------HHHHhhhHHHHH
Confidence 988899999998887776411 1256777888888777643211 000 0001101 112
Q ss_pred EEEEeCCCCCCCCccceecCCCCCCCCCCCChhhHHHhccCC
Q 002784 832 IGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQP 873 (881)
Q Consensus 832 v~v~~a~~~KC~RCW~~~~~v~~~~~~~~lC~RC~~vl~~~~ 873 (881)
...++|.++||+|||+++..+ +.||.||.+++...+
T Consensus 901 ~~~~ra~~~~c~rcw~~~~~~------~~lc~rc~~~~~~~~ 936 (937)
T KOG0433|consen 901 CRKHRATFSRCVRCWDLRKQD------PPLCLRCQDLRFQDL 936 (937)
T ss_pred HHHHHhcccccHHHHhhhccC------CcccchHHHHHhhcc
Confidence 335589999999999999853 459999999987543
No 6
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.3e-119 Score=1124.42 Aligned_cols=641 Identities=26% Similarity=0.468 Sum_probs=550.4
Q ss_pred CCCccccchHHHHHHHhCCCccccccC-CCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCC
Q 002784 120 RANALVREPEIHKLWDDHQVFLRVADK-NDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDC 198 (881)
Q Consensus 120 r~n~~~~E~~~~~~W~~~~~y~~~~~~-~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~ 198 (881)
++|++++|++|+++|+++++|++..+. .++++|+|+||||||||.||||||+|++++|+++||+||+||+|+|+|||||
T Consensus 7 ~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~ 86 (1159)
T PLN02882 7 DFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDC 86 (1159)
T ss_pred CCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCC
Confidence 468889999999999999999986543 3567899999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhccccccc---CCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------e
Q 002784 199 HGLPIELKVLQSLDEDAKK---DLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------Y 268 (881)
Q Consensus 199 hGLPiE~~a~k~l~~~~~~---~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y 268 (881)
||||||.++++.++.+.+. ++++++|+++|++|+.++++.|+++|+|||+|+||+++|+||||.|.+.+ |
T Consensus 87 hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~ 166 (1159)
T PLN02882 87 HGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLF 166 (1159)
T ss_pred CCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHH
Confidence 9999999999988754332 57999999999999999999999999999999999999999999999986 7
Q ss_pred cCCceeceeeeEeeecCCCCCccccccc------------------c-c----CCceEEEecCccccccccceeeeCCCC
Q 002784 269 PEGHVSRSIYAVFRMVSAPPSTSGLLNE------------------F-L----PDLGLAVWTTTPWTVPANAAVAVNAKL 325 (881)
Q Consensus 269 ~~g~~s~siy~~f~~~~~~~~~~~~l~~------------------~-~----~~~~l~iwTTtPwTl~an~av~v~p~~ 325 (881)
++|++ |.+++.+.||+.+.+.|.. | + .+.+++||||||||||||+||||||+.
T Consensus 167 ~kGli----yr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~ 242 (1159)
T PLN02882 167 EKGLV----YKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNF 242 (1159)
T ss_pred HCCCE----EecceeEeecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCC
Confidence 77874 5555566676666554431 0 1 126899999999999999999999999
Q ss_pred cEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhC------------CceEEEEecccccccC
Q 002784 326 QYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWG------------TKLVIKKTLAGSDLEN 393 (881)
Q Consensus 326 ~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~------------~~~~i~~~~~G~~L~g 393 (881)
+|++|+... +++.||||+++++.+.+..+ ..++++.+++|++|+|
T Consensus 243 ~Y~~v~~~~-----------------------~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g 299 (1159)
T PLN02882 243 TYVKVRNKY-----------------------TGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVG 299 (1159)
T ss_pred cEEEEEecC-----------------------CCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcC
Confidence 999998531 25799999999998886542 2488999999999999
Q ss_pred CEeecCCC------CCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCC-----CceeccCCCCccccccccCC
Q 002784 394 CRYVHPVD------NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL-----PILSPVDDEGKFTEEAGKFS 462 (881)
Q Consensus 394 ~~~~~Pl~------~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL-----~~~~~vd~~G~~~~~~~~~~ 462 (881)
++|.||+. ++.+|| ++++||++++|||+||+|||||++||.+|++||| +++++||++|+|++++++|.
T Consensus 300 ~~y~p~~~~~~~~~~~~~~V-i~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~ 378 (1159)
T PLN02882 300 KKYEPLFDYFSEFSDTAFRV-VADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFS 378 (1159)
T ss_pred CEEECCccccccccCceEEE-EccCccCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccC
Confidence 99987762 356888 8899999999999999999999999999999999 79999999999999999999
Q ss_pred CceeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhccccccCCC------
Q 002784 463 GLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ------ 536 (881)
Q Consensus 463 G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~------ 536 (881)
|+.| ++|++.|++.|+++|.|++.+.+.|+|||||||++|+|||+++|||++++++|+++++++++|+|+|++
T Consensus 379 G~~v-~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~~~i~w~P~~~~~~r~ 457 (1159)
T PLN02882 379 GRYV-KDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDYVKEKRF 457 (1159)
T ss_pred CCCH-HHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhhCCcEEECCcchhhHH
Confidence 9999 599999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 458 ~~wl~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dV 537 (1159)
T PLN02882 458 HNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDV 537 (1159)
T ss_pred HHHHhcCcccceeeccccCCccceEEeCCCCeEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhceEecCce
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 538 lD~WFdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSK 617 (1159)
T PLN02882 538 FDCWFESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSK 617 (1159)
T ss_pred eeeeeccCccHHHHcCCcccChhHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCccc
Confidence
Q ss_pred ----------CCCCCCCchHhHHhhhcCC--CCceecChhHHHHH-HHHHHHHhhHHHHHHhcccC--------CCCCCc
Q 002784 537 ----------EAPGYGADVLRLWVSSVDY--TGDVMIGPQVLRQM-SDIYRKLRGTLRYLLGNLHD--------WRVGNS 595 (881)
Q Consensus 537 ----------~~~~yGaD~LRlwvas~~~--~~D~~~s~~~l~~~-~~~~~Kl~Nt~rf~l~nl~~--------f~~~~~ 595 (881)
++++||||+||||++++++ .+|++|+++.+... ++.++++||++||+++++.+ |.|...
T Consensus 618 SlGNvIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~ 697 (1159)
T PLN02882 618 SLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDL 697 (1159)
T ss_pred CCCCCCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCcccc
Confidence 2249999999999998765 57899998888754 67999999999999998755 333210
Q ss_pred cCC-CCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHH
Q 002784 596 ISY-DDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSA 674 (881)
Q Consensus 596 ~~~-~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~ 674 (881)
... .....+|+||+++++++++.++++|++|+|++|++.|++|++ +|||||++.+|+|+|++. ++.++++++++|++
T Consensus 698 ~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv~-~lsN~YIe~~Kprl~~~~-~~~~~~~al~tL~~ 775 (1159)
T PLN02882 698 AKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFID-NLTNIYVRFNRKRLKGRT-GEEDCRTALSTLYN 775 (1159)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHhHHHHHhCCHhhhCCC-ChHHHHHHHHHHHH
Confidence 001 234679999999999999999999999999999999999996 599999999999999865 44567889999999
Q ss_pred HHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 002784 675 HLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVAR 754 (881)
Q Consensus 675 il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~R 754 (881)
+|..+++||||||||+||+||++|+... +...+|||++.||++++.+.+ ++++..++.++++++.++.+.+ |
T Consensus 776 vL~~l~~LLaPfmPf~aEeI~q~L~~~~----~~~~~SVh~~~~P~~~~~~~d--~~le~~~~~~~~ii~~~r~~r~--~ 847 (1159)
T PLN02882 776 VLLTSCKVMAPFTPFFTEVLYQNLRKVL----PGSEESIHYCSFPQVDEGELD--ERIEQSVSRMQTVIELARNIRE--R 847 (1159)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHhcccc----CCCCCceeecCCCCcchhhcc--hhHHHHHHHHHHHHHHHHHHHH--H
Confidence 9999999999999999999999997420 011369999999999888766 6677889999999999987766 5
Q ss_pred hcCcCCCCcceEEEEEeCChHHHH-HHHHhhccCCchhHhhhhhhccceEEcc
Q 002784 755 TGKLIGSSLEAKVYLFTDDASLAS-RLREMCTAKHDADTLQRIFIISQVEVLP 806 (881)
Q Consensus 755 ~~k~i~~sle~~v~I~~~~~~~~~-~l~~l~~~~~~~~~L~~l~~vS~V~i~~ 806 (881)
.+..++.+++..+++.. ++...+ ++..+ .+.|.+.++|.+|++.+
T Consensus 848 ~~~~~~~pl~~~~~~~~-~~~~~~~~~~~~------~~~i~~e~nv~~v~~~~ 893 (1159)
T PLN02882 848 HNKPLKTPLKEMVVVHP-DAEFLDDITGKL------KEYVLEELNVRSLVPCN 893 (1159)
T ss_pred cCCCCCCccceeeEecC-CHHHHHHHHHHH------HHHHHHhhCcceEEEee
Confidence 55667877877655544 333332 22444 36789999999998864
No 7
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=6.6e-119 Score=1113.40 Aligned_cols=650 Identities=23% Similarity=0.441 Sum_probs=544.6
Q ss_pred CCCCCCCCCccccchHHHHHHHhCCCccccccC-CCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeee
Q 002784 114 KTTFGMRANALVREPEIHKLWDDHQVFLRVADK-NDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRY 192 (881)
Q Consensus 114 ~t~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~~-~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~ 192 (881)
-|.|||++|++++|++|+++|+++++|++..+. .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|
T Consensus 65 ~~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~ 144 (1205)
T PTZ00427 65 FTGVSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVER 144 (1205)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeecc
Confidence 567999999999999999999999999987543 3567899999999999999999999999999999999999999999
Q ss_pred ccCcCCCCcHHHHHHHHhccccccc---CCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce--
Q 002784 193 VPGWDCHGLPIELKVLQSLDEDAKK---DLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-- 267 (881)
Q Consensus 193 ~pGwD~hGLPiE~~a~k~l~~~~~~---~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-- 267 (881)
+|||||||||||.+++|.++...+. ++++++|+++|++|+.++++.|+++|+|||+|+||+++|+||||.|.+.+
T Consensus 145 ~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~ 224 (1205)
T PTZ00427 145 KFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWW 224 (1205)
T ss_pred CCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHH
Confidence 9999999999999999988654332 47999999999999999999999999999999999999999999999975
Q ss_pred -----ecCCceeceeeeEeeecCCCCCcccccccc---------------------------------------------
Q 002784 268 -----YPEGHVSRSIYAVFRMVSAPPSTSGLLNEF--------------------------------------------- 297 (881)
Q Consensus 268 -----Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~--------------------------------------------- 297 (881)
|++|+ +|.++++++||+.+.+.|.+.
T Consensus 225 ~f~~L~ekGl----IYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1205)
T PTZ00427 225 VFSELYKNNY----VYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYS 300 (1205)
T ss_pred HHHHHHHCCC----EEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeeccccccccccccccccccccccccee
Confidence 55555 344444444444443322110
Q ss_pred -----------------------cCCceEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcc
Q 002784 298 -----------------------LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVL 354 (881)
Q Consensus 298 -----------------------~~~~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~ 354 (881)
..+.+++||||||||||||+||||||+.+|+.|+...
T Consensus 301 i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~-------------------- 360 (1205)
T PTZ00427 301 VLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVK-------------------- 360 (1205)
T ss_pred eccccccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecC--------------------
Confidence 0136899999999999999999999999999997521
Q ss_pred cCCCceEEEEeccchHHHHHHhCC---ceEEEEecccccccCCEeecCC---------CCCCcceeecCccccccCCCCc
Q 002784 355 KDQKKVFIIVASDLVPTLEAKWGT---KLVIKKTLAGSDLENCRYVHPV---------DNRQCPVVIGGDYITTESGTGL 422 (881)
Q Consensus 355 ~~~~~~~~iva~~~~~~l~~~~~~---~~~i~~~~~G~~L~g~~~~~Pl---------~~~~~pi~i~~~~V~~~~GTG~ 422 (881)
+++.+|+|+.+++.+.+..+. +++++.+++|++|+|++|.||+ .++.+|| |+++||++++|||+
T Consensus 361 ---~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pV-i~~d~V~~~~GTGi 436 (1205)
T PTZ00427 361 ---SNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKI-LADDFVTDDAGTGI 436 (1205)
T ss_pred ---CCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccccccccCCceeEE-EccCccCCCCCcee
Confidence 257899999999999887653 5899999999999999999887 2557898 78999999999999
Q ss_pred eecCCCCChhHHHHHHHhCC--C----ceeccCCCCccccccccCCCceeccchhHHHHHHHHhcCCccceecccccccc
Q 002784 423 VHTAPGHGQEDYVTSLKYGL--P----ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPY 496 (881)
Q Consensus 423 Vh~aPaHg~~Dy~~~~k~gL--~----~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~ 496 (881)
||+|||||++||.+|++||| | ++++||++|+|++++++|.|+.| ++|++.|++.|+++|+|++.+.+.|+|||
T Consensus 437 Vh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v-~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~ 515 (1205)
T PTZ00427 437 VHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYI-KEADNVIKKKLKNENRLLSNNTIVHSYPF 515 (1205)
T ss_pred eEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCCCCH-HHhHHHHHHHHHhCCCeeeeeeeeccCCE
Confidence 99999999999999999999 2 78899999999999999999999 59999999999999999999999999999
Q ss_pred ccCCCCCeEEeeccccccchhhHHHHHHHhhccccccCCC----------------------------------------
Q 002784 497 DWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ---------------------------------------- 536 (881)
Q Consensus 497 ~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~---------------------------------------- 536 (881)
||||++|||||+++|||++++++++++++++++|+|+|++
T Consensus 516 cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~~~~ 595 (1205)
T PTZ00427 516 CWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVI 595 (1205)
T ss_pred eCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCCCCeEe
Confidence 9999999999999999999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 596 ~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD 675 (1205)
T PTZ00427 596 CVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPAD 675 (1205)
T ss_pred ccCCHHHHHHHhccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCce
Confidence
Q ss_pred ----------------------------------------------------------CCCCCCCchHhHHhhhc-CC-C
Q 002784 537 ----------------------------------------------------------EAPGYGADVLRLWVSSV-DY-T 556 (881)
Q Consensus 537 ----------------------------------------------------------~~~~yGaD~LRlwvas~-~~-~ 556 (881)
++.+||||+||||++++ .. +
T Consensus 676 ~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~ 755 (1205)
T PTZ00427 676 FIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRA 755 (1205)
T ss_pred EEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCC
Confidence 23499999999999864 54 6
Q ss_pred CceecChhHHH-HHHHHHHHHhhHHHHHHhcccCCCCCC--c------cCCCCCCHhHHHHHHHHHHHHHHHHHHHhccC
Q 002784 557 GDVMIGPQVLR-QMSDIYRKLRGTLRYLLGNLHDWRVGN--S------ISYDDLPMIDQYALFQLENIVKNIRESYESYQ 627 (881)
Q Consensus 557 ~D~~~s~~~l~-~~~~~~~Kl~Nt~rf~l~nl~~f~~~~--~------~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~ 627 (881)
+|++|+++.+. ....+++++||++||+++++.++...+ . ....++..+|+||+++|+++++.++++|++|+
T Consensus 756 ~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~ 835 (1205)
T PTZ00427 756 ENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYK 835 (1205)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 89999999885 568889999999999999876432110 0 00124567999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCcccccc--
Q 002784 628 FFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLE-- 705 (881)
Q Consensus 628 f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~-- 705 (881)
|++|++.|++|++ +||+||++++|+|||++..+ ..+.+++++|+++|+.+++||||||||+|||||++|+......
T Consensus 836 f~~A~~~i~~Fi~-~lsnwYIe~~K~rl~~~~~~-~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~~~~~~~~ 913 (1205)
T PTZ00427 836 LYNVLPKLLQFIE-NLTNWYIRLNRDRMRGSLGE-ENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRRVKSTNEH 913 (1205)
T ss_pred HHHHHHHHHHHHH-HhccHHHHHcchhhccCCCc-HHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhhccccccc
Confidence 9999999999996 59999999999999986433 3456899999999999999999999999999999996310000
Q ss_pred -----------C----CCCCcceeecCCCCcchhc-CCCChhhHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCcceE-EE
Q 002784 706 -----------D----GSAAEFVFESKWPVLDEKW-RTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAK-VY 768 (881)
Q Consensus 706 -----------~----~~~~~sV~~~~wP~~~~~~-~~~~~~~~~~~~~l~~lr~~v~~~le~~R~~k~i~~sle~~-v~ 768 (881)
+ +...+|||++.||++++.+ .+ .+++..++.++++. .+++.+|+...|+...+.. +.
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d--~~~e~~~~~~~~ii----~~~R~~R~~~~i~~r~pl~~~~ 987 (1205)
T PTZ00427 914 NENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIID--YEIIELIEKMKDVI----LLGRVLRERRKVASKKPLKSIT 987 (1205)
T ss_pred cccccccccccccccccCCCCeeEeeCCCCCcchhccC--HHHHHHHHHHHHHH----HHHHHHHHHcCCCCCCccceeE
Confidence 0 0013599999999988764 34 55666666665544 4445677776666555544 45
Q ss_pred EEeCChHHHHHHHHhhccCCchhHhhhhhhccceEEcc
Q 002784 769 LFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLP 806 (881)
Q Consensus 769 I~~~~~~~~~~l~~l~~~~~~~~~L~~l~~vS~V~i~~ 806 (881)
|...++...+.+..+ .+.|++.++|.+|++..
T Consensus 988 v~~~~~~~~~~~~~~------~~~i~~e~nv~~v~~~~ 1019 (1205)
T PTZ00427 988 ILHPNESYFKNFDQI------SNYIKEELNVLNVECSN 1019 (1205)
T ss_pred EecCcHHHHHHHHHH------HHHHHHhhCcceEEEEe
Confidence 555455455555555 36789999999998765
No 8
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-117 Score=1103.47 Aligned_cols=632 Identities=31% Similarity=0.538 Sum_probs=544.6
Q ss_pred CCCCCCccccchHHHHHHHhCCCcccccc-CCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccC
Q 002784 117 FGMRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (881)
Q Consensus 117 f~~r~n~~~~E~~~~~~W~~~~~y~~~~~-~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pG 195 (881)
+|.++|+.++|++||++|+++++|++..+ +.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||
T Consensus 7 ~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~G 86 (975)
T PRK06039 7 VDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAG 86 (975)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCC
Confidence 56789999999999999999999998654 24678899999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHhccccc---ccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-----
Q 002784 196 WDCHGLPIELKVLQSLDEDA---KKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ----- 267 (881)
Q Consensus 196 wD~hGLPiE~~a~k~l~~~~---~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q----- 267 (881)
|||||||||.+|+|.++... ..++++++|+++|++|+.++++.|++||+|||+|+||+|+|.||||.|++++
T Consensus 87 wD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~ 166 (975)
T PRK06039 87 WDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALK 166 (975)
T ss_pred cCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHH
Confidence 99999999999999876432 3467999999999999999999999999999999999999999999999986
Q ss_pred --ecCCceeceeeeEeeecCCCCCccccccc------------------c-c---CCceEEEecCccccccccceeeeCC
Q 002784 268 --YPEGHVSRSIYAVFRMVSAPPSTSGLLNE------------------F-L---PDLGLAVWTTTPWTVPANAAVAVNA 323 (881)
Q Consensus 268 --Y~~g~~s~siy~~f~~~~~~~~~~~~l~~------------------~-~---~~~~l~iwTTtPwTl~an~av~v~p 323 (881)
|++|+ +|.+.++++||+.+.+.|.+ | + .+.+++||||||||||||+||||||
T Consensus 167 ~l~~kGl----iyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P 242 (975)
T PRK06039 167 QLYDKGL----LYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHP 242 (975)
T ss_pred HHHHCCC----EEecceeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECC
Confidence 88888 57777888888887765431 0 1 2468999999999999999999999
Q ss_pred CCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecccccccCCEeecCCCC-
Q 002784 324 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDN- 402 (881)
Q Consensus 324 ~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~- 402 (881)
+.+|++++.+ ++.||||+++++.+.+ ..++++.+++|++|+|++|.|||..
T Consensus 243 ~~~Y~~~~~~-------------------------~~~yi~a~~~~~~~~~---~~~~~~~~~~G~~L~G~~~~~P~~~~ 294 (975)
T PRK06039 243 DIDYVKVEGG-------------------------GEVYILAEALLEKVLK---EDYEVVETFKGSELEGLEYEPPFPYF 294 (975)
T ss_pred CCceEEEecC-------------------------CeEEEEhHHHHHHHhh---cccEEEeeecCccccCCEEECCcccc
Confidence 9999999854 5789999999999876 3678899999999999999999973
Q ss_pred ----CCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccCCCceeccchhHHHHHHH
Q 002784 403 ----RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYL 478 (881)
Q Consensus 403 ----~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L 478 (881)
+.+|| ++++||++++|||+||+|||||++||.++++||||++++||++|+|++++|+|.|+++ ++|++.|++.|
T Consensus 295 ~~~~~~~pi-i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v-~eA~~~Ii~~L 372 (975)
T PRK06039 295 ADEKNAFRV-VLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFV-KDADKEIIRDL 372 (975)
T ss_pred cCCcceeEE-EecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccccCCCH-HHhhHHHHHHH
Confidence 46898 7899999999999999999999999999999999999999999999999999999999 59999999999
Q ss_pred HhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhccccccCCC----------------------
Q 002784 479 DEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ---------------------- 536 (881)
Q Consensus 479 ~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~---------------------- 536 (881)
+++|++++.+.+.|+|||||||++|+++++++|||++++++++.+++++++++|+|++
T Consensus 373 ~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr 452 (975)
T PRK06039 373 KERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNR 452 (975)
T ss_pred HhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeecc
Confidence 9999999999999999999999999999999999999999999999999988876653
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 453 ~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~~~ 532 (975)
T PRK06039 453 YWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHY 532 (975)
T ss_pred ccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEeccccccceeecCCccHHHhCC
Confidence
Q ss_pred -------------------------------------------------------------------------CCCCCCC
Q 002784 537 -------------------------------------------------------------------------EAPGYGA 543 (881)
Q Consensus 537 -------------------------------------------------------------------------~~~~yGa 543 (881)
++++|||
T Consensus 533 p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGa 612 (975)
T PRK06039 533 PFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGA 612 (975)
T ss_pred cccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhCh
Confidence 2248999
Q ss_pred chHhHHhhhcCC-CCceecChhH-HHHHHHHHHHHhhHHHHHH--hcccCCCCC-CccCCCCCCHhHHHHHHHHHHHHHH
Q 002784 544 DVLRLWVSSVDY-TGDVMIGPQV-LRQMSDIYRKLRGTLRYLL--GNLHDWRVG-NSISYDDLPMIDQYALFQLENIVKN 618 (881)
Q Consensus 544 D~LRlwvas~~~-~~D~~~s~~~-l~~~~~~~~Kl~Nt~rf~l--~nl~~f~~~-~~~~~~~l~~~Dr~il~~l~~li~~ 618 (881)
|+||||++++.+ ++|++|+++. ++.+.+.+++|||+++|++ +++.+|.+. ...+...+..+|+|++++++.++++
T Consensus 613 DalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~ 692 (975)
T PRK06039 613 DALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKE 692 (975)
T ss_pred HHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHHHHHH
Confidence 999999987765 8899999999 6777899999999999976 566665433 1122345678999999999999999
Q ss_pred HHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhC
Q 002784 619 IRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 698 (881)
Q Consensus 619 v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L 698 (881)
++++|++|+|+.|++.+++|+ ++||+||++.+|+|+|....+ ..+++++++|+++|+.+++||||||||+|||||+.|
T Consensus 693 v~~a~e~y~~~~A~~~l~~f~-~~lsn~Yi~~~k~r~w~~~~~-~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L 770 (975)
T PRK06039 693 VTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFWKEEDD-PDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNL 770 (975)
T ss_pred HHHHHHccCHHHHHHHHHHHH-HHHHHHHHHHhhhhhccCCCc-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 999999999999999999999 789999999999999987543 456779999999999999999999999999999999
Q ss_pred CccccccCCCCCcceeecCCCCcchhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCcceEE-EEEeCChHHH
Q 002784 699 PFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKV-YLFTDDASLA 777 (881)
Q Consensus 699 ~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~R~~k~i~~sle~~v-~I~~~~~~~~ 777 (881)
+.. + ..+|||+++||++++.+.+ ++++..++.++++.+.+ +.+|+...|+...+... +|...++ ..
T Consensus 771 ~~~----~--~~~sv~~~~~P~~~~~~~d--~~le~~~~~~~~ii~~~----r~~r~~~~i~~~~pl~~~~v~~~~~-~~ 837 (975)
T PRK06039 771 TRE----D--APESVHLADWPEVDESLID--EELEEAMDLVREIVSLG----RSARKKAGIKVRQPLSKITVAEDEE-VA 837 (975)
T ss_pred ccc----C--CCCeeEecCCCCCccccCC--HHHHHHHHHHHHHHHHH----HHHHHHcCCCCCCccceEEEecCHH-HH
Confidence 741 0 1369999999999887766 66666677776665544 45666666665555433 4443332 44
Q ss_pred HHHHHhhccCCchhHhhhhhhccceE
Q 002784 778 SRLREMCTAKHDADTLQRIFIISQVE 803 (881)
Q Consensus 778 ~~l~~l~~~~~~~~~L~~l~~vS~V~ 803 (881)
+.++.+. +.|+++++|.+|.
T Consensus 838 ~~~~~~~------~~i~~~~nv~~v~ 857 (975)
T PRK06039 838 EALERYE------DLIKDELNVKEVP 857 (975)
T ss_pred HHHHHHH------HHHHHHhCcccch
Confidence 4455442 5677778877764
No 9
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=6.4e-117 Score=1091.53 Aligned_cols=618 Identities=42% Similarity=0.730 Sum_probs=537.8
Q ss_pred CCCCCCCccccchHHHHHHHhCCCcccccc-CCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeecc
Q 002784 116 TFGMRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194 (881)
Q Consensus 116 ~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~-~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~p 194 (881)
+||||+|+.++|++||++|+++++|++..+ +.++++|+||+|||||||.||||||+|++++||++||+||+||+|+|+|
T Consensus 1 ~f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~ 80 (861)
T TIGR00392 1 KFPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKP 80 (861)
T ss_pred CCCCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 599999999999999999999999998654 3457889999999999999999999999999999999999999999999
Q ss_pred CcCCCCcHHHHHHHHhcccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce----
Q 002784 195 GWDCHGLPIELKVLQSLDEDAKKDLT---PSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ---- 267 (881)
Q Consensus 195 GwD~hGLPiE~~a~k~l~~~~~~~~~---p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q---- 267 (881)
||||||||||.+|+|.++...+.+++ +++|+++|++|+.++++.|+++|+|||+++||+|+|.||||+|+++|
T Consensus 81 G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f 160 (861)
T TIGR00392 81 GWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLF 160 (861)
T ss_pred CcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHH
Confidence 99999999999999988654334444 46799999999999999999999999999999999999999999986
Q ss_pred ---ecCCceeceeeeEeeecCCCCCccccccc--------------------c-c--CC--------ceEEEecCccccc
Q 002784 268 ---YPEGHVSRSIYAVFRMVSAPPSTSGLLNE--------------------F-L--PD--------LGLAVWTTTPWTV 313 (881)
Q Consensus 268 ---Y~~g~~s~siy~~f~~~~~~~~~~~~l~~--------------------~-~--~~--------~~l~iwTTtPwTl 313 (881)
|++|+ +|.+...++||+.+.+.|.+ | + .+ .+++|||||||||
T Consensus 161 ~~l~~~gl----iyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl 236 (861)
T TIGR00392 161 KEAHEKGL----LYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTL 236 (861)
T ss_pred HHHHHCCC----EeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccc
Confidence 45555 23334444444443322210 0 0 11 1899999999999
Q ss_pred cccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecccccccC
Q 002784 314 PANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLEN 393 (881)
Q Consensus 314 ~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L~g 393 (881)
|||+||||||+.+|++++.+. .++.||+++++++++....+.+++++.+++|.+|.|
T Consensus 237 ~~~~ai~v~p~~~Y~~~~~~~-----------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g 293 (861)
T TIGR00392 237 PSNLAIAVHPDFEYALVQDNT-----------------------KVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEG 293 (861)
T ss_pred cCCeeeeeCCCCceEEEEcCC-----------------------CCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCC
Confidence 999999999999999998641 147899999999999888766688899999999999
Q ss_pred CEeecCCCCCCc------ceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccc-------c
Q 002784 394 CRYVHPVDNRQC------PVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG-------K 460 (881)
Q Consensus 394 ~~~~~Pl~~~~~------pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~-------~ 460 (881)
++|.||++++++ |+|++++||++++|||+||+|||||++||.++++||||++++||++|+|+.+.+ .
T Consensus 294 ~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~ 373 (861)
T TIGR00392 294 LEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVK 373 (861)
T ss_pred CEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccc
Confidence 999999999888 987888999999999999999999999999999999999999999999987654 4
Q ss_pred CCCceeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhccccccCCC----
Q 002784 461 FSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ---- 536 (881)
Q Consensus 461 ~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~---- 536 (881)
|.|++++ +|++.|++.|+++|.+++.+.+.|+|||||||++||++|+++|||++++++++.+++++++++|+|++
T Consensus 374 ~~g~~~~-~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~~~~~ 452 (861)
T TIGR00392 374 DADKDII-KANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIKKVNWVPEWGEGR 452 (861)
T ss_pred cCCccHH-HhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhCCcEEECchHHHH
Confidence 8899994 89999999999999999999999999999999999999999999999999999999999888877664
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 453 ~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~ 532 (861)
T TIGR00392 453 FGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRV 532 (861)
T ss_pred HHHHHhCCCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 533 ~dvlDvWfdS~~~~~~~~~~~~~~~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KM 612 (861)
T TIGR00392 533 PDVLDVWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKM 612 (861)
T ss_pred cccccchhhcCcchHHhcCCCCCcchhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCc
Confidence
Q ss_pred ------------CCCCCCCchHhHHhhhcCCCCceecChhHHHHHHH-HHHHHhhHHHHHH--hcccCCCCC-CccCCCC
Q 002784 537 ------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSD-IYRKLRGTLRYLL--GNLHDWRVG-NSISYDD 600 (881)
Q Consensus 537 ------------~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~-~~~Kl~Nt~rf~l--~nl~~f~~~-~~~~~~~ 600 (881)
++++||+|+||||+++.++++|++|+++.++.+.+ +.++++|+++|++ +++.+|.+. ..++...
T Consensus 613 SKSkGNvI~p~d~i~~yGaDalR~~ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~ 692 (861)
T TIGR00392 613 SKSLGNVVDPLKVINKYGADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEK 692 (861)
T ss_pred CCCCCCCCCHHHHHHHcCHHHHHHHHHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccccccc
Confidence 22489999999999988889999999999988655 8888999999998 888877653 2233345
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHH
Q 002784 601 LPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIV 680 (881)
Q Consensus 601 l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~ 680 (881)
+...|+|++++++.++++++++|++|+|++|++.+++|++.+|||+|++.+|+|+|+...++..| +++++|+.+++.++
T Consensus 693 l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l~ 771 (861)
T TIGR00392 693 FPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLTLV 771 (861)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999998899999999999999987766555 89999999999999
Q ss_pred HHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChhhH-------HHHHHHHHHHHHHHHHHHHH
Q 002784 681 RVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEI-------YFWGKILELRTEVNKVLEVA 753 (881)
Q Consensus 681 ~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~-------~~~~~l~~lr~~v~~~le~~ 753 (881)
+||+|||||+|||||+.|+.. ...+||+.++||++++.+.+ ++++ +.++.++++|++++..++..
T Consensus 772 ~lL~P~~P~~aeeiw~~L~~~------~~~~si~~~~wP~~~~~~~d--~~~~~~~~~l~~~i~~ir~ir~~~~~~~~~~ 843 (861)
T TIGR00392 772 RLLAPFLPHTAEEIYQNLPGG------EEEESVHLNLWPEVDEEFID--EALEANMAIVREIVEAFLALRDAANKKLRQP 843 (861)
T ss_pred HHHHHhhhhhHHHHHHhcccc------CCCCceeccCCCCCchhhcC--HHHHHHHHHHHHHHHHHHHHHHHhChhhhhH
Confidence 999999999999999999642 01368999999998877655 3332 56778899999999999999
Q ss_pred hhcCcCCCCcceEEEEE
Q 002784 754 RTGKLIGSSLEAKVYLF 770 (881)
Q Consensus 754 R~~k~i~~sle~~v~I~ 770 (881)
+....|++++++.|.+.
T Consensus 844 ~~~~~i~~~~~~~~~~~ 860 (861)
T TIGR00392 844 LKELVIGKSLEAVLKAV 860 (861)
T ss_pred hhcCEEcCCchhheEec
Confidence 98888988888887653
No 10
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-115 Score=1024.80 Aligned_cols=596 Identities=28% Similarity=0.467 Sum_probs=527.4
Q ss_pred CCCCCccccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcC
Q 002784 118 GMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWD 197 (881)
Q Consensus 118 ~~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD 197 (881)
|..||+.++|++|++.|+++++|+....... ++|+|..||||++|.||||||+|.++.|+++||+||+||+|+|+||||
T Consensus 2 ~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~-~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~D 80 (877)
T COG0525 2 PKTYDPKEIEEKWYKKWEESGYFKPDPNEDK-PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTD 80 (877)
T ss_pred CCCCChhhhhHHHHHHHHhcCCccCCCCCCC-CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCC
Confidence 4458999999999999999999987633211 569999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHhcc--cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------e
Q 002784 198 CHGLPIELKVLQSLD--EDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------Y 268 (881)
Q Consensus 198 ~hGLPiE~~a~k~l~--~~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y 268 (881)
|||+|+|.++++++. ...+.++++++|+++|++|.+++...+++||+|||+++||+++|+||||.+.+++ |
T Consensus 81 hAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly 160 (877)
T COG0525 81 HAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLY 160 (877)
T ss_pred CCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHH
Confidence 999999999999984 2346788999999999999999999999999999999999999999999999985 9
Q ss_pred cCCceeceeeeEeeecCCCCCcccccccc-----------------c--CCceEEEecCccccccccceeeeCCCCcEEE
Q 002784 269 PEGHVSRSIYAVFRMVSAPPSTSGLLNEF-----------------L--PDLGLAVWTTTPWTVPANAAVAVNAKLQYAV 329 (881)
Q Consensus 269 ~~g~~s~siy~~f~~~~~~~~~~~~l~~~-----------------~--~~~~l~iwTTtPwTl~an~av~v~p~~~Y~~ 329 (881)
++|+ ||.+.+++|||+.+.+.++.. + .+.+++|+|||||||+|++||+|||+++
T Consensus 161 ~~Gl----IYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~De--- 233 (877)
T COG0525 161 EKGL----IYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDE--- 233 (877)
T ss_pred HCCc----eeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCCh---
Confidence 9999 566678999999998876531 1 2458999999999999999999999862
Q ss_pred EEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecccccccCCEeecCCCCCCcceee
Q 002784 330 VEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVI 409 (881)
Q Consensus 330 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i 409 (881)
++++|+|+.+.+|+.++++|| |
T Consensus 234 ---------------------------------------------------------RYk~LvGk~v~lPl~~r~IpI-i 255 (877)
T COG0525 234 ---------------------------------------------------------RYKHLVGKEVILPLVGREIPI-I 255 (877)
T ss_pred ---------------------------------------------------------hhHhhcCCEEecCCCCCeeee-e
Confidence 113799999999999999999 8
Q ss_pred cCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccc-cCCCceeccchhHHHHHHHHhcCCcccee
Q 002784 410 GGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG-KFSGLDVLGDGNVAVVKYLDEQMSLIMEE 488 (881)
Q Consensus 410 ~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~-~~~G~~v~~~a~~~ii~~L~~~g~l~~~~ 488 (881)
.++||++++|||+|+++|+||++||+++++|+||+++++|++|+++++++ +|.||+++ +||++|++.|++.|+|++.+
T Consensus 256 aD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~-eAR~kIv~~L~~~GlLvk~e 334 (877)
T COG0525 256 ADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRF-EARKKIVEDLEEQGLLVKIE 334 (877)
T ss_pred cCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHH-HHHHHHHHHHHhCCCeEeee
Confidence 89999999999999999999999999999999999999999999998775 99999996 99999999999999999999
Q ss_pred ccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhc--cccccCCC------------------------------
Q 002784 489 PYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--QVKWVPPQ------------------------------ 536 (881)
Q Consensus 489 ~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~--~v~~~P~~------------------------------ 536 (881)
.+.|+.||||||++||++++++|||+++..+++.++++++ +++|+|+.
T Consensus 335 ~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvW 414 (877)
T COG0525 335 PHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVW 414 (877)
T ss_pred eccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceE
Confidence 9999999999999999999999999999999999999999 89999988
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 415 y~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWva 494 (877)
T COG0525 415 YCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVA 494 (877)
T ss_pred EecCCCcEEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHH
Confidence
Q ss_pred --------------------------------------------CCCCCCCchHhHHhhhc-CCCCceecChhHHHHHHH
Q 002784 537 --------------------------------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSD 571 (881)
Q Consensus 537 --------------------------------------------~~~~yGaD~LRlwvas~-~~~~D~~~s~~~l~~~~~ 571 (881)
++++||||+||||+++. ..++|++|+++.++...+
T Consensus 495 rmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rn 574 (877)
T COG0525 495 RMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRN 574 (877)
T ss_pred HHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHH
Confidence 23599999999999876 678899999999999999
Q ss_pred HHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHh
Q 002784 572 IYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVA 651 (881)
Q Consensus 572 ~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~ 651 (881)
+++||||..||+++|+.+..+..... ...+.+||||+++|+++++.++++|++|+|..|.+++++|+|++||+||++++
T Consensus 575 F~nKlWNa~Rfv~~~~~~~~~~~~~~-~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~ 653 (877)
T COG0525 575 FLNKLWNATRFVLMNLDDLGPDDLDL-LALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELA 653 (877)
T ss_pred HHHHHHhHHHHHHhcccccCcccccc-cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 99999999999999987765432111 23368999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChh
Q 002784 652 KDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVG 731 (881)
Q Consensus 652 KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~ 731 (881)
|++||.+ ...+++++.+|+++|+.+++||||||||+||||||+++.. +||+.++||.+++...+ ++
T Consensus 654 K~~l~~~---~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~---------~si~~~~~P~~~~~~~d--~~ 719 (877)
T COG0525 654 KPRLYGG---EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT---------ESIHLASWPEVDEELID--EE 719 (877)
T ss_pred hhhhcCc---HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC---------CeEEeccCCCcchhhcc--HH
Confidence 9999987 4456689999999999999999999999999999999742 59999999999876555 55
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCcceEEEEEeCChHHHHHHHHhhccCCchhHhhhhhhccceEEcc
Q 002784 732 EIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLP 806 (881)
Q Consensus 732 ~~~~~~~l~~lr~~v~~~le~~R~~k~i~~sle~~v~I~~~~~~~~~~l~~l~~~~~~~~~L~~l~~vS~V~i~~ 806 (881)
.+..++.+.++. ..++..|....+..+.+.++.+... ++..+.++.. .+.|..+..++++++..
T Consensus 720 a~~~~~~l~~ii----~~iR~~r~e~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~i~~~~~~~~i~~~~ 783 (877)
T COG0525 720 AEKEFELLKEII----SAIRNLRAEMNLSPSAPLKVVLVGS-EELEDRLEAN------EDDIKGLANLEELEILS 783 (877)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHcCCCCCCceeEEEecc-HhHHHHHHHH------HHHHHHhcCcceeeecc
Confidence 555566665544 4455678887788887888777764 4444545433 36888899999999875
No 11
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.4e-111 Score=1037.08 Aligned_cols=600 Identities=26% Similarity=0.429 Sum_probs=525.4
Q ss_pred CCCCCCCCccccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeecc
Q 002784 115 TTFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194 (881)
Q Consensus 115 t~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~p 194 (881)
+.+|..||+.++|++||++|+++++|++..+ .+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|
T Consensus 3 ~~~~~~y~~~~~E~~~~~~W~~~~~f~~~~~--~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~ 80 (874)
T PRK05729 3 MELPKTYDPKEVEAKWYQKWEEKGYFKPDDN--SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLP 80 (874)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCCCcccCcC--CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 4467789999999999999999999998643 34569999999999999999999999999999999999999999999
Q ss_pred CcCCCCcHHHHHHHHhccc--ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-----
Q 002784 195 GWDCHGLPIELKVLQSLDE--DAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ----- 267 (881)
Q Consensus 195 GwD~hGLPiE~~a~k~l~~--~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q----- 267 (881)
||||||||+|.++++.++. ..+.++++++|+++|++|++++++.|++||++||+++||+|+|+||||.|.+++
T Consensus 81 G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~ 160 (874)
T PRK05729 81 GTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFV 160 (874)
T ss_pred CCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHH
Confidence 9999999999999887642 234578899999999999999999999999999999999999999999999986
Q ss_pred --ecCCceeceeeeEeeecCCCCCcccccccc-------------------cCCceEEEecCccccccccceeeeCCCCc
Q 002784 268 --YPEGHVSRSIYAVFRMVSAPPSTSGLLNEF-------------------LPDLGLAVWTTTPWTVPANAAVAVNAKLQ 326 (881)
Q Consensus 268 --Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~-------------------~~~~~l~iwTTtPwTl~an~av~v~p~~~ 326 (881)
|++|+| |.+.++++||+.+.+.|.+. ..+.+++|||||||||+||+||||||+..
T Consensus 161 ~L~~~GlI----yr~~~~v~wcp~~~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ 236 (874)
T PRK05729 161 RLYEKGLI----YRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDE 236 (874)
T ss_pred HHHHCCCE----eecCcccccCCCCCCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCcc
Confidence 889994 66667888998877665421 13468999999999999999999999952
Q ss_pred EEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecccccccCCEeecCCCCCCcc
Q 002784 327 YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCP 406 (881)
Q Consensus 327 Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~~~~p 406 (881)
. .++|+|++|.||++++++|
T Consensus 237 r------------------------------------------------------------y~~l~g~~~~~P~~~~~ip 256 (874)
T PRK05729 237 R------------------------------------------------------------YKHLIGKTVILPLVGREIP 256 (874)
T ss_pred H------------------------------------------------------------HHHhcCCEEECCCCCCeee
Confidence 1 1368999999999999999
Q ss_pred eeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccCCCceeccchhHHHHHHHHhcCCccc
Q 002784 407 VVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIM 486 (881)
Q Consensus 407 i~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l~~ 486 (881)
| |+++||++++|||+||++||||++||.++++||||+++++|++|++++++|+|.|++++ +|++.|++.|++.|++++
T Consensus 257 i-i~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~-~ar~~i~~~L~~~g~l~~ 334 (874)
T PRK05729 257 I-IADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRF-EARKAIVADLEELGLLVK 334 (874)
T ss_pred E-ecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHH-HHHHHHHHHHHhCCCeee
Confidence 9 78999999999999999999999999999999999999999999999999999999995 999999999999999999
Q ss_pred eeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhc--cccccCCC----------------------------
Q 002784 487 EEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--QVKWVPPQ---------------------------- 536 (881)
Q Consensus 487 ~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~--~v~~~P~~---------------------------- 536 (881)
.+++.|+|||||||++||++++++|||++++.+++.++++++ +++|+|+.
T Consensus 335 ~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP 414 (874)
T PRK05729 335 IEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIP 414 (874)
T ss_pred eEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCccc
Confidence 999999999999999999999999999999999999999985 57777764
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 415 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~ 494 (874)
T PRK05729 415 AWYDEDGEVYVGREEPEAREKALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMM 494 (874)
T ss_pred EEEeCCCcEEeCCcccccccccCeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHH
Confidence
Q ss_pred ---------------------------------------CCCCCCCchHhHHhhhc-CCCCceecChhHHHHHHHHHHHH
Q 002784 537 ---------------------------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKL 576 (881)
Q Consensus 537 ---------------------------------------~~~~yGaD~LRlwvas~-~~~~D~~~s~~~l~~~~~~~~Kl 576 (881)
++++||||+||||+++. .+++|++|+++.+....++++||
T Consensus 495 ~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl 574 (874)
T PRK05729 495 GLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKL 574 (874)
T ss_pred HHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHH
Confidence 23489999999999876 67889999999999999999999
Q ss_pred hhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhcccc
Q 002784 577 RGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLY 656 (881)
Q Consensus 577 ~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy 656 (881)
||++||+++++.++.+....+...+...|+|++++|+++++.++++|++|+|++|++.+++|+++++||||++.+|+|||
T Consensus 575 ~N~~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~ 654 (874)
T PRK05729 575 WNASRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ 654 (874)
T ss_pred HHHHHHHHHhcccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999887765432222233567899999999999999999999999999999999999999999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChhhHHHH
Q 002784 657 TGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFW 736 (881)
Q Consensus 657 ~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~ 736 (881)
+ . .+++++.+|+++|+.+++||||||||+|||||+.|+.. . ..+||+.++||++++.+ + ++++..+
T Consensus 655 -~---~-~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~----~--~~~si~~~~~P~~~~~~-~--~~~~~~~ 720 (874)
T PRK05729 655 -E---A-AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPL----G--IEESIMLAPWPEADEAI-D--EAAEAEF 720 (874)
T ss_pred -h---h-HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccC----C--CCCceeecCCCCCCccc-C--HHHHHHH
Confidence 2 2 26789999999999999999999999999999999742 0 12589999999988776 4 5566666
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcCCCCcceEEEEEeCChHHHHHHHHhhccCCchhHhhhhhhccceEEcc
Q 002784 737 GKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLP 806 (881)
Q Consensus 737 ~~l~~lr~~v~~~le~~R~~k~i~~sle~~v~I~~~~~~~~~~l~~l~~~~~~~~~L~~l~~vS~V~i~~ 806 (881)
+.+++ +...++.+|+...|+.+.+..+.|...++...+.+..+ .+.|+.++.+++|++..
T Consensus 721 ~~~~~----ii~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~l~~~------~~~i~~l~~~~~v~~~~ 780 (874)
T PRK05729 721 EWLKE----LITAIRNIRAEMNIPPSKKLPLLLKGADAEDRARLEAN------EAYIKRLARLESLEILA 780 (874)
T ss_pred HHHHH----HHHHHHHHHHhcCCCCCCeeeEEEEeCCHHHHHHHHHH------HHHHHHHhCcCceEEec
Confidence 66655 45566678888889888888888876555555556554 36899999999999854
No 12
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=8.1e-111 Score=1040.54 Aligned_cols=607 Identities=21% Similarity=0.339 Sum_probs=518.2
Q ss_pred CCCCCCccccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCc
Q 002784 117 FGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGW 196 (881)
Q Consensus 117 f~~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGw 196 (881)
+|..|++..+|++|+++|+++++|++.. +.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 96 ~~~~yd~~~iE~~w~~~W~~~~~f~~~~-~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~ 174 (1066)
T PLN02381 96 MAKQYSPSAVEKSWYAWWEKSGYFGADA-KSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGV 174 (1066)
T ss_pred cccCCCHHHHHHHHHHHHHHCCCccCCc-cCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCC
Confidence 4556888999999999999999999854 345688999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHhcc---cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce------
Q 002784 197 DCHGLPIELKVLQSLD---EDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ------ 267 (881)
Q Consensus 197 D~hGLPiE~~a~k~l~---~~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q------ 267 (881)
||||||+|.+++++++ ...+.++++++|+++|++|+.++++.|++||++||+++||+|+|+||||.|++++
T Consensus 175 D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~ 254 (1066)
T PLN02381 175 DHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVR 254 (1066)
T ss_pred CCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHH
Confidence 9999999999998873 2235678999999999999999999999999999999999999999999999986
Q ss_pred -ecCCceeceeeeEeeecCCCCCcccccccc---------------------------------c--CCceEEEecCccc
Q 002784 268 -YPEGHVSRSIYAVFRMVSAPPSTSGLLNEF---------------------------------L--PDLGLAVWTTTPW 311 (881)
Q Consensus 268 -Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~---------------------------------~--~~~~l~iwTTtPw 311 (881)
|++|+ +|.+.++++||+.+.+.|.+. + .+.+++|||||||
T Consensus 255 L~~~Gl----Iyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpE 330 (1066)
T PLN02381 255 LYKEGL----IYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIE 330 (1066)
T ss_pred HHHCCC----EEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHH
Confidence 88998 577788999998877655321 0 1236889999999
Q ss_pred cccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecccccc
Q 002784 312 TVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDL 391 (881)
Q Consensus 312 Tl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L 391 (881)
||+|++||+|||++. .+++|
T Consensus 331 ti~g~~avaV~P~d~------------------------------------------------------------ry~~L 350 (1066)
T PLN02381 331 TMLGDTAIAIHPDDE------------------------------------------------------------RYKHL 350 (1066)
T ss_pred HHhcccceeeCCCCc------------------------------------------------------------chhhh
Confidence 999999999999853 12468
Q ss_pred cCCEeecCCCCCCcceeec-CccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccc-cCCCceeccc
Q 002784 392 ENCRYVHPVDNRQCPVVIG-GDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG-KFSGLDVLGD 469 (881)
Q Consensus 392 ~g~~~~~Pl~~~~~pi~i~-~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~-~~~G~~v~~~ 469 (881)
+|++|.|||+++.+|| |. ++||++++|||+||++||||++||.++++||||++++||++|+|+++++ +|.|++++ +
T Consensus 351 ~G~~~~~Pl~~~~ipI-i~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~-e 428 (1066)
T PLN02381 351 HGKFAVHPFNGRKLPI-ICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRF-A 428 (1066)
T ss_pred CCCEEECCCCCCEEEE-EECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHH-H
Confidence 8999999999999999 54 4599999999999999999999999999999999999999999998865 89999995 9
Q ss_pred hhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhh-----ccccccCCC--------
Q 002784 470 GNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAI-----GQVKWVPPQ-------- 536 (881)
Q Consensus 470 a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i-----~~v~~~P~~-------- 536 (881)
|++.|++.|++.|++++.+.|.|+|||||||++||++++++|||++++.+++++++++ ++|+|+|++
T Consensus 429 Ar~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~w 508 (1066)
T PLN02381 429 AREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRW 508 (1066)
T ss_pred HHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 678888876
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 509 l~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~ 588 (1066)
T PLN02381 509 LENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGL 588 (1066)
T ss_pred HhcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 589 ~p~~~lg~P~~~~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~ 668 (1066)
T PLN02381 589 FPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLE 668 (1066)
T ss_pred hHHHHhcCCCCHHHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHH
Confidence
Q ss_pred C-------------------------------------CCCCCCchHhHHhhhcC-CCCceecChhHHHHHHHHHHHHhh
Q 002784 537 E-------------------------------------APGYGADVLRLWVSSVD-YTGDVMIGPQVLRQMSDIYRKLRG 578 (881)
Q Consensus 537 ~-------------------------------------~~~yGaD~LRlwvas~~-~~~D~~~s~~~l~~~~~~~~Kl~N 578 (881)
+ +|+||||+||||+++++ .++|++|+.+.+....++++||||
T Consensus 669 vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwN 748 (1066)
T PLN02381 669 VINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWN 748 (1066)
T ss_pred HHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHH
Confidence 1 34899999999998765 457999999999988999999999
Q ss_pred HHHHHHhcccC-CCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccC
Q 002784 579 TLRYLLGNLHD-WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYT 657 (881)
Q Consensus 579 t~rf~l~nl~~-f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~ 657 (881)
++||+++|+.+ |.+...++...+..+|+|++++|+.++++++++|++|+|++|++.+++|+|.+||||||+.+|+|+|+
T Consensus 749 a~rf~~~~~~~~~~~~~~~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~ 828 (1066)
T PLN02381 749 AVRFAMSKLGDDYTPPATLSVETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAG 828 (1066)
T ss_pred HHHHHHhhcccccCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHcc
Confidence 99999998864 54422223345678999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-ChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChhhHHHH
Q 002784 658 GGT-TSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFW 736 (881)
Q Consensus 658 ~~~-~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~ 736 (881)
+.. ++..|++++.+|+++|+.+++||||||||+|||||+.|+.. .++...+||++++||.+++.|.+ ++++..+
T Consensus 829 ~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~---~~~~~~~SI~~~~~P~~~~~~~d--~~le~~~ 903 (1066)
T PLN02381 829 DNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQP---KDHTRKDSIMISEYPSAVEAWTN--EKVEYEM 903 (1066)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhh---ccCCCCCeeEeCCCCCCCchhCC--HHHHHHH
Confidence 654 23457789999999999999999999999999999999632 00011369999999999887766 5666677
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-cCCCCcceEEEEEeCChHHHHHHHHhhccCCchhHhhhhhhccceEEc
Q 002784 737 GKILELRTEVNKVLEVARTGK-LIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVL 805 (881)
Q Consensus 737 ~~l~~lr~~v~~~le~~R~~k-~i~~sle~~v~I~~~~~~~~~~l~~l~~~~~~~~~L~~l~~vS~V~i~ 805 (881)
+.++++...++ .+|... .|..+....+.+...++...+.+... .+.|..+..+++|++.
T Consensus 904 ~~l~~ii~~iR----~lR~~~~~i~~k~~~~~~~~~~~~~~~~~l~~~------~~~i~~l~~~~~v~~~ 963 (1066)
T PLN02381 904 DLVLSTVKCLR----SLRAEVLEKQKNERLPAFALCRNQEIAAIIKSH------QLEILTLANLSSLKVL 963 (1066)
T ss_pred HHHHHHHHHHH----HHHHHccccccCcCCcEEEEcCCHHHHHHHHHH------HHHHHHhhCCCeeeee
Confidence 77766655554 455544 34444444455555555555556554 2578889999999874
No 13
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.2e-109 Score=1035.61 Aligned_cols=605 Identities=23% Similarity=0.364 Sum_probs=519.8
Q ss_pred CCCCCCccccchHHHHHHHhCCCccccc---cCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeec
Q 002784 117 FGMRANALVREPEIHKLWDDHQVFLRVA---DKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYV 193 (881)
Q Consensus 117 f~~r~n~~~~E~~~~~~W~~~~~y~~~~---~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~ 193 (881)
+|.+||+.++|++||++|+++++|++.. .+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+
T Consensus 24 ~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~ 103 (995)
T PTZ00419 24 MAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWV 103 (995)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 5677999999999999999999999852 2335688999999999999999999999999999999999999999999
Q ss_pred cCcCCCCcHHHHHHHHhccc---ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce---
Q 002784 194 PGWDCHGLPIELKVLQSLDE---DAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ--- 267 (881)
Q Consensus 194 pGwD~hGLPiE~~a~k~l~~---~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q--- 267 (881)
|||||||||+|.++++.+.. ..+.++++++|+++|++|+.++++.|++||++||+++||+|+|+||||+|++++
T Consensus 104 ~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~ 183 (995)
T PTZ00419 104 PGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEA 183 (995)
T ss_pred CCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHH
Confidence 99999999999999887632 234578999999999999999999999999999999999999999999999986
Q ss_pred ----ecCCceeceeeeEeeecCCCCCcccccccc---------------------------------c--CCc-eEEEec
Q 002784 268 ----YPEGHVSRSIYAVFRMVSAPPSTSGLLNEF---------------------------------L--PDL-GLAVWT 307 (881)
Q Consensus 268 ----Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~---------------------------------~--~~~-~l~iwT 307 (881)
|++|+ +|.+.+.++||+.+.+.|.+. + .+. +++|||
T Consensus 184 F~~l~~~Gl----iyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaT 259 (995)
T PTZ00419 184 FVRLYEDGL----IYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVAT 259 (995)
T ss_pred HHHHHHCCC----EEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEe
Confidence 88998 566677888988877654210 1 122 899999
Q ss_pred CccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecc
Q 002784 308 TTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLA 387 (881)
Q Consensus 308 TtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~ 387 (881)
||||||+||+||||||++.+.
T Consensus 260 TrPeTl~g~~avav~P~d~~y----------------------------------------------------------- 280 (995)
T PTZ00419 260 TRIETMLGDVAVAVHPKDERY----------------------------------------------------------- 280 (995)
T ss_pred CCcchhhhCeEEEECCCCcHH-----------------------------------------------------------
Confidence 999999999999999996310
Q ss_pred cccccCCEeecCC-CCCCcceeecCc-cccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccCCCce
Q 002784 388 GSDLENCRYVHPV-DNRQCPVVIGGD-YITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLD 465 (881)
Q Consensus 388 G~~L~g~~~~~Pl-~~~~~pi~i~~~-~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~G~~ 465 (881)
++|+|++|.||+ +++.+|| |+++ ||++++|||+||++||||++||+++++||||++++||++|+|++++|+|.|++
T Consensus 281 -~~l~G~~~~~Pl~~~~~ipi-i~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~ 358 (995)
T PTZ00419 281 -KKLHGKELIHPFIPDRKIPI-IADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMH 358 (995)
T ss_pred -HHhcCCEEECCccCCCEEEE-EeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCC
Confidence 268899999999 8999999 7799 99999999999999999999999999999999999999999999999999999
Q ss_pred eccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhc--cccccCCC-------
Q 002784 466 VLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--QVKWVPPQ------- 536 (881)
Q Consensus 466 v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~--~v~~~P~~------- 536 (881)
++ +|++.|++.|++.|++++.+.|.|+|||||||++||++++++|||++++++++.++++++ +++|+|+.
T Consensus 359 ~~-~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~ 437 (995)
T PTZ00419 359 RF-DCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYH 437 (995)
T ss_pred HH-HHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeEEEChHHHHHHHH
Confidence 95 999999999999999999999999999999999999999999999999999999999986 45554432
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 438 wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~ 517 (995)
T PTZ00419 438 WLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSG 517 (995)
T ss_pred HHhccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 518 l~p~~~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~ 597 (995)
T PTZ00419 518 LFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPL 597 (995)
T ss_pred HHHHHHhCCCCChHHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChH
Confidence
Q ss_pred -C-------------------------------------CCCCCCchHhHHhhhc-CCCCceecChhHHHHHHHHHHHHh
Q 002784 537 -E-------------------------------------APGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKLR 577 (881)
Q Consensus 537 -~-------------------------------------~~~yGaD~LRlwvas~-~~~~D~~~s~~~l~~~~~~~~Kl~ 577 (881)
+ +|+||||+||||+++. ..++|++|+.+.+....++++|||
T Consensus 598 ~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklw 677 (995)
T PTZ00419 598 EVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLW 677 (995)
T ss_pred HHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHH
Confidence 1 2389999999999864 567899999999998899999999
Q ss_pred hHHHHHHhcccCCCCC-Cc-----cCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHh
Q 002784 578 GTLRYLLGNLHDWRVG-NS-----ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVA 651 (881)
Q Consensus 578 Nt~rf~l~nl~~f~~~-~~-----~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~ 651 (881)
|++||+++++.++.+. .. .+..++..+|+|++++|++++++++++|++|+|+.|++.+++|+++++|||||+.+
T Consensus 678 N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~ 757 (995)
T PTZ00419 678 NAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELI 757 (995)
T ss_pred HHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 9999999998775432 11 11234567899999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChh
Q 002784 652 KDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVG 731 (881)
Q Consensus 652 KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~ 731 (881)
|+|++. ..++..+++++++|+++|+.+++||||||||+|||||++|+.. ....+||++++||.+++.|.+ ++
T Consensus 758 K~~l~~-~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~-----~~~~~si~~~~~P~~~~~~~d--~~ 829 (995)
T PTZ00419 758 KPRLSK-QSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNY-----LRKSESISIAKYPQPNPGWNN--EA 829 (995)
T ss_pred hhhhhc-CCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcc-----CCCCCeeeccCCCCCCcccCC--HH
Confidence 999943 3345567789999999999999999999999999999999642 001369999999998877765 56
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCcceEEEEEeCChHHHHHHHHhhccCCchhHhhhhhhccceEEc
Q 002784 732 EIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVL 805 (881)
Q Consensus 732 ~~~~~~~l~~lr~~v~~~le~~R~~k~i~~sle~~v~I~~~~~~~~~~l~~l~~~~~~~~~L~~l~~vS~V~i~ 805 (881)
++..++.++++...|+ .+|+...|+.+.+..+.|...++...+.++.. .+.|..+..+.+|++.
T Consensus 830 ~e~~~~~~~~ii~~iR----~~r~~~~i~~~~~l~~~i~~~~~~~~~~~~~~------~~~i~~l~~~~~v~~~ 893 (995)
T PTZ00419 830 LDEEMKIIMSIVKSIR----SLIATLGIPNKTKPDCYVTAKDAELIELIESA------ENLISTLAKIGSVSVI 893 (995)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHcCCCCCCceeEEEEeCCHHHHHHHHHH------HHHHHHhcCCCeeEEe
Confidence 6667777776655554 56666667766676776766555555555554 3678999999999885
No 14
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=6e-109 Score=1019.46 Aligned_cols=591 Identities=24% Similarity=0.409 Sum_probs=505.3
Q ss_pred CCCCCCccccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCc
Q 002784 117 FGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGW 196 (881)
Q Consensus 117 f~~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGw 196 (881)
+|.++++.. |++|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 57 ~~~~y~~~~-E~~~~~~W~~~~~f~~~~~-~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~ 134 (958)
T PLN02943 57 TAKSFDFTS-EERIYNWWESQGYFKPNFD-RGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGT 134 (958)
T ss_pred cCCCCChhh-hHHHHHHHHHCCCcccCcc-cCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCC
Confidence 444578888 9999999999999998654 45678999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHhccc--ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------
Q 002784 197 DCHGLPIELKVLQSLDE--DAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ------- 267 (881)
Q Consensus 197 D~hGLPiE~~a~k~l~~--~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q------- 267 (881)
||||||+|.++++.++. ..+.++++++|+++|++|++++++.|++||++||+++||+|+|+||||.|++++
T Consensus 135 D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l 214 (958)
T PLN02943 135 DHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRL 214 (958)
T ss_pred CcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999988732 234678899999999999999999999999999999999999999999999986
Q ss_pred ecCCceeceeeeEeeecCCCCCcccccccc-----------------c---CCceEEEecCccccccccceeeeCCCCc-
Q 002784 268 YPEGHVSRSIYAVFRMVSAPPSTSGLLNEF-----------------L---PDLGLAVWTTTPWTVPANAAVAVNAKLQ- 326 (881)
Q Consensus 268 Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~-----------------~---~~~~l~iwTTtPwTl~an~av~v~p~~~- 326 (881)
|++|+ +|.+..+++||+.+.+.|.+. + .+.+++|||||||||+||+||||||+++
T Consensus 215 ~~~Gl----iyr~~~~V~wcp~~~Tals~~Evey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~r 290 (958)
T PLN02943 215 HEKGL----IYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDR 290 (958)
T ss_pred HHCCC----EEecCceeccCCCCCCCcCHHHhhcccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHH
Confidence 88998 566677889999887765321 2 1258999999999999999999999976
Q ss_pred EEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecccccccCCEeecCCC-CCCc
Q 002784 327 YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVD-NRQC 405 (881)
Q Consensus 327 Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~-~~~~ 405 (881)
|. .|.|++|.||++ ++++
T Consensus 291 y~-------------------------------------------------------------~l~g~~~~~Pl~~~~~i 309 (958)
T PLN02943 291 YS-------------------------------------------------------------KYIGKMAIVPMTYGRHV 309 (958)
T ss_pred HH-------------------------------------------------------------HHcCCEEECCCcCCCee
Confidence 52 367899999996 9999
Q ss_pred ceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccCCCceeccchhHHHHHHHHhcCCcc
Q 002784 406 PVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLI 485 (881)
Q Consensus 406 pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l~ 485 (881)
|| |+++||++++|||+||++||||++||+++++||||+++++|++|++++.+ |+.| .+|++.|++.|+++|+++
T Consensus 310 pi-i~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~----g~~~-~ear~~iv~~L~~~g~l~ 383 (958)
T PLN02943 310 PI-IADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA----GLYW-FEAREKLWSDLEETGLAV 383 (958)
T ss_pred eE-EecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccC----CccH-HHHHHHHHHHHHHCCCee
Confidence 99 78999999999999999999999999999999999999999999998754 5557 499999999999999999
Q ss_pred ceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhc--cccccCCC---------------------------
Q 002784 486 MEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--QVKWVPPQ--------------------------- 536 (881)
Q Consensus 486 ~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~--~v~~~P~~--------------------------- 536 (881)
+.+++.|+||+||||++||++++++|||++++++++.++++++ .++|+|+.
T Consensus 384 ~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pI 463 (958)
T PLN02943 384 KKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRI 463 (958)
T ss_pred eeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCcc
Confidence 9999999999999999999999999999999999999999986 47777765
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 464 P~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G 543 (958)
T PLN02943 464 PVWYIVGKDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETG 543 (958)
T ss_pred CceeccccCCCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEe
Confidence
Q ss_pred -----------------------------------------------------CCCCCCCchHhHHhhhcCCCCceecCh
Q 002784 537 -----------------------------------------------------EAPGYGADVLRLWVSSVDYTGDVMIGP 563 (881)
Q Consensus 537 -----------------------------------------------------~~~~yGaD~LRlwvas~~~~~D~~~s~ 563 (881)
.+++||+|++|||++++.+++|++|++
T Consensus 544 ~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~ 623 (958)
T PLN02943 544 HDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLST 623 (958)
T ss_pred ehHHHHHHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccH
Confidence 235899999999999888889999999
Q ss_pred hHHHHHHHHHHHHhhHHHHHHhcccCC--------------CCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChH
Q 002784 564 QVLRQMSDIYRKLRGTLRYLLGNLHDW--------------RVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFF 629 (881)
Q Consensus 564 ~~l~~~~~~~~Kl~Nt~rf~l~nl~~f--------------~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~ 629 (881)
+.+..+.++++||||++||+++++.+. ++. .+..++...|+|++++++.++++++++|++|+|+
T Consensus 624 ~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~ 701 (958)
T PLN02943 624 ERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKE--ESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFG 701 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCcc--ccccccCHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 999999999999999999999987532 111 1112467899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCC
Q 002784 630 KIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSA 709 (881)
Q Consensus 630 ~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~ 709 (881)
.|++.+++|+++++||+|++.+|+|+|++..+ ..+++++++|+++++.+++||+|||||+|||||++|++.
T Consensus 702 ~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~-~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~-------- 772 (958)
T PLN02943 702 DVGREIYDFFWSDFADWYIEASKTRLYHSGDN-SALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYR-------- 772 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHhhccCCch-HHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCC--------
Confidence 99999999999999999999999999976543 346789999999999999999999999999999999743
Q ss_pred CcceeecCCCCcchhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCcceEEEEEeCChHHHHHHHHhhccCCc
Q 002784 710 AEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHD 789 (881)
Q Consensus 710 ~~sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~R~~k~i~~sle~~v~I~~~~~~~~~~l~~l~~~~~~ 789 (881)
.+||+.++||+++ .+.+ .+....++.++++.+.| +.+|+...|..+....+.|...+ ...+.+...
T Consensus 773 ~~si~~~~wP~~~-~~~d--~~~~~~~~~v~~ii~~i----R~~r~~~~i~~~~~~~~~i~~~~-~~~~~~~~~------ 838 (958)
T PLN02943 773 KEALIVSPWPQTS-LPKD--LKSIKRFENLQSLTRAI----RNARAEYSVEPAKRISASIVASA-EVIEYISKE------ 838 (958)
T ss_pred CCceeecCCCCCc-ccCC--HHHHHHHHHHHHHHHHH----HHHHHHcCCCCCCcccEEEecCh-hHHHHHHHH------
Confidence 3589999999975 3333 44555666666655554 45666666776667777776644 234444433
Q ss_pred hhHhhhhhhcc--ceEEc
Q 002784 790 ADTLQRIFIIS--QVEVL 805 (881)
Q Consensus 790 ~~~L~~l~~vS--~V~i~ 805 (881)
.+.++.|..++ +|++.
T Consensus 839 ~~~i~~l~~~~~~~~~~~ 856 (958)
T PLN02943 839 KEVLALLSRLDLQNVHFT 856 (958)
T ss_pred HHHHHHHhcCcccccccc
Confidence 35677777653 66654
No 15
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.7e-109 Score=1024.09 Aligned_cols=607 Identities=22% Similarity=0.348 Sum_probs=516.1
Q ss_pred CCCCCCCccccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccC
Q 002784 116 TFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (881)
Q Consensus 116 ~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pG 195 (881)
.+|.+|++.++|++||++|+++++|++...+.++++|+|++||||+||.|||||++|++++||++||+||+||+|+|+||
T Consensus 14 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G 93 (1052)
T PRK14900 14 ELAKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPG 93 (1052)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCC
Confidence 35667899999999999999999999853334578899999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHhccc---ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-----
Q 002784 196 WDCHGLPIELKVLQSLDE---DAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ----- 267 (881)
Q Consensus 196 wD~hGLPiE~~a~k~l~~---~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q----- 267 (881)
|||||||+|.++++.++. ....++++++|++.|++|++++++.|++||++||+++||+++|+||||+|.+++
T Consensus 94 ~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~ 173 (1052)
T PRK14900 94 TDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFV 173 (1052)
T ss_pred CCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHH
Confidence 999999999999987742 234578999999999999999999999999999999999999999999999986
Q ss_pred --ecCCceeceeeeEeeecCCCCCcccccccc------------------c--CCceEEEecCccccccccceeeeCCCC
Q 002784 268 --YPEGHVSRSIYAVFRMVSAPPSTSGLLNEF------------------L--PDLGLAVWTTTPWTVPANAAVAVNAKL 325 (881)
Q Consensus 268 --Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~------------------~--~~~~l~iwTTtPwTl~an~av~v~p~~ 325 (881)
|++|+ +|.+..+++||+.+.+.|.+. + .+.+++||||||||||||+||||||++
T Consensus 174 ~L~~~Gl----iyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~ 249 (1052)
T PRK14900 174 RLHEEGL----IYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLD 249 (1052)
T ss_pred HHHHCCC----EEeccceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCc
Confidence 88888 566777888988877654310 1 235899999999999999999999996
Q ss_pred cEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecccccccCCEeecCCCCCCc
Q 002784 326 QYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQC 405 (881)
Q Consensus 326 ~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~~~~ 405 (881)
++ .++|.|++|.||++++.+
T Consensus 250 ~~------------------------------------------------------------y~~L~G~~~~~Pl~~~~i 269 (1052)
T PRK14900 250 PR------------------------------------------------------------YMALHGKKVRHPITGRTF 269 (1052)
T ss_pred HH------------------------------------------------------------HHHhcCCEEECCCCCCee
Confidence 31 026889999999999999
Q ss_pred ceeecC-ccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccCCCceeccchhHHHHHHHHhcCCc
Q 002784 406 PVVIGG-DYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSL 484 (881)
Q Consensus 406 pi~i~~-~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l 484 (881)
|| |.+ .||++++|||+||++||||++||+++++||||++++||++|+|++++|+|.|++++ +|++.|++.|++.|++
T Consensus 270 pI-i~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~-ear~~Ii~~L~~~g~l 347 (1052)
T PRK14900 270 PI-VADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRF-EARKEVKRLLAEQGLD 347 (1052)
T ss_pred EE-EecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHH-HHHHHHHHHHHhCCCe
Confidence 99 633 48999999999999999999999999999999999999999999988999999995 9999999999999999
Q ss_pred cceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhcc--ccccCCC--------------------------
Q 002784 485 IMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ--VKWVPPQ-------------------------- 536 (881)
Q Consensus 485 ~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~--v~~~P~~-------------------------- 536 (881)
++.+.|.|+|||||||++||++|+++|||++++.|++.+++.+++ ++|+|+.
T Consensus 348 ~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~P 427 (1052)
T PRK14900 348 RGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQ 427 (1052)
T ss_pred ecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCce
Confidence 999999999999999999999999999999999999999999964 7666553
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 428 IP~w~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a 507 (1052)
T PRK14900 428 IPAWYCPDGHVTVARETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVA 507 (1052)
T ss_pred eCeEEcCCCcEEecccccccccccCccceecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHhHHHH
Confidence
Q ss_pred --------------------------------------------CCCCCCCchHhHHhhhc-CCCCceecChhHHHHHHH
Q 002784 537 --------------------------------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSD 571 (881)
Q Consensus 537 --------------------------------------------~~~~yGaD~LRlwvas~-~~~~D~~~s~~~l~~~~~ 571 (881)
++++||+|+||||+++. ..++|++|+++.+....+
T Consensus 508 ~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~ 587 (1052)
T PRK14900 508 RMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRA 587 (1052)
T ss_pred HHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHH
Confidence 23599999999999864 678999999999988899
Q ss_pred HHHHHhhHHHHHHhcccCCCCCCccC-CCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHH
Q 002784 572 IYRKLRGTLRYLLGNLHDWRVGNSIS-YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDV 650 (881)
Q Consensus 572 ~~~Kl~Nt~rf~l~nl~~f~~~~~~~-~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~ 650 (881)
+++||||+.||+++++.+|.+....+ ...+..+|+|++++++.++++++++|++|+|++|++.+++|+++++||+||+.
T Consensus 588 f~nkl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~ 667 (1052)
T PRK14900 588 FANKLWNASRFALMNLSGYQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIEL 667 (1052)
T ss_pred HHHHHHHHHHHHHHhhhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHh
Confidence 99999999999999888775432221 23457899999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCCh
Q 002784 651 AKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPV 730 (881)
Q Consensus 651 ~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~ 730 (881)
+|++||.+ +...+++++++|+++|+.+++||+|||||+|||||+.|+... ......+||++++||++++ .+ +
T Consensus 668 ~k~~l~~~--~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~--~~~~~~~SV~~~~wP~~~~--~d--~ 739 (1052)
T PRK14900 668 AKEALASE--DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQV--GASAWADSVLAAEYPRKGE--AD--E 739 (1052)
T ss_pred ccHhhccC--CHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhcccc--ccCCCCCceeecCCCCCCc--cc--H
Confidence 99999875 344566789999999999999999999999999999997420 0000126999999999865 23 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCcce----EEEEEeCChHHHHHHHH-hhccCCchhHhhhhhhccceEEc
Q 002784 731 GEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEA----KVYLFTDDASLASRLRE-MCTAKHDADTLQRIFIISQVEVL 805 (881)
Q Consensus 731 ~~~~~~~~l~~lr~~v~~~le~~R~~k~i~~sle~----~v~I~~~~~~~~~~l~~-l~~~~~~~~~L~~l~~vS~V~i~ 805 (881)
+++..++.++++... ++.+|+...|+..... .+.|...++...+.++. + .+.|..++.+++|++.
T Consensus 740 ~~e~~~~~v~~ii~~----iR~~R~~~~i~~~~~l~~~~~~~v~~~~~~~~~~l~~~~------~~~i~~l~~~~~v~~~ 809 (1052)
T PRK14900 740 AAEAAFRPVLGIIDA----VRNIRGEMGIPWKVKLGAQAPVEIAVADPALRDLLQAGE------LARVHRVAGVEGSRLV 809 (1052)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHcCCCCCCccCCCCeEEEEcCCHHHHHHHHHHH------HHHHHHhhCCCeeEee
Confidence 555556666555444 4566776666655444 46665555555555554 3 2578899999999885
Q ss_pred c
Q 002784 806 P 806 (881)
Q Consensus 806 ~ 806 (881)
.
T Consensus 810 ~ 810 (1052)
T PRK14900 810 V 810 (1052)
T ss_pred c
Confidence 3
No 16
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=3.2e-108 Score=1013.15 Aligned_cols=599 Identities=27% Similarity=0.439 Sum_probs=521.8
Q ss_pred CCCCCccccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcC
Q 002784 118 GMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWD 197 (881)
Q Consensus 118 ~~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD 197 (881)
|..+|+.++|++||++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+|++|+|+||||
T Consensus 2 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D 80 (861)
T TIGR00422 2 PKDYDPHEVEKKWYKKWEKSGFFKPDGN-SNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTD 80 (861)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCcc-cCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcC
Confidence 5568999999999999999999998644 356889999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHhcccc--cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------e
Q 002784 198 CHGLPIELKVLQSLDED--AKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------Y 268 (881)
Q Consensus 198 ~hGLPiE~~a~k~l~~~--~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y 268 (881)
|||||||.++++.++.. ...++++++|+++|++|++++.+.+++||++||+++||+|+|+||||.|.+++ |
T Consensus 81 ~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 160 (861)
T TIGR00422 81 HAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLY 160 (861)
T ss_pred cCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHH
Confidence 99999999999887533 23568899999999999999999999999999999999999999999999986 8
Q ss_pred cCCceeceeeeEeeecCCCCCcccccccc-----------------c---CCceEEEecCccccccccceeeeCCCCcEE
Q 002784 269 PEGHVSRSIYAVFRMVSAPPSTSGLLNEF-----------------L---PDLGLAVWTTTPWTVPANAAVAVNAKLQYA 328 (881)
Q Consensus 269 ~~g~~s~siy~~f~~~~~~~~~~~~l~~~-----------------~---~~~~l~iwTTtPwTl~an~av~v~p~~~Y~ 328 (881)
++|++ |.+..+++||+.+.+.|... + .+.+++|||||||||+||+||||||+.++
T Consensus 161 ~~GlI----y~~~~~v~wcp~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~r- 235 (861)
T TIGR00422 161 EKGLI----YRGEYLVNWDPKLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDER- 235 (861)
T ss_pred HCCCe----eecCcccccCCCCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchH-
Confidence 89995 55566788888877666421 1 12689999999999999999999999531
Q ss_pred EEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecccccccCCEeecCCCCCCccee
Q 002784 329 VVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVV 408 (881)
Q Consensus 329 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~~~~pi~ 408 (881)
.++|+|++|.||++++++||
T Consensus 236 -----------------------------------------------------------y~~l~g~~~~~P~~~~~ipi- 255 (861)
T TIGR00422 236 -----------------------------------------------------------YKHLIGKKVILPLTGRKIPI- 255 (861)
T ss_pred -----------------------------------------------------------HHHhcCCEEEcCCCCCccee-
Confidence 03689999999999999999
Q ss_pred ecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccCCCceeccchhHHHHHHHHhcCCcccee
Q 002784 409 IGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEE 488 (881)
Q Consensus 409 i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~ 488 (881)
|+++||++++|||+||++|+||++||+++++||||+++++|++|.+++++|.|.|++++ +|++.|++.|+++|++++.+
T Consensus 256 i~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~-~ar~~i~~~L~~~g~l~~~~ 334 (861)
T TIGR00422 256 IADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRF-EARKKIVEDLKEEGLLVKIE 334 (861)
T ss_pred eecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHH-HhHHHHHHHHHhCCCeeeee
Confidence 78999999999999999999999999999999999999999999999999999999995 99999999999999999999
Q ss_pred ccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhc--cccccCCC------------------------------
Q 002784 489 PYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--QVKWVPPQ------------------------------ 536 (881)
Q Consensus 489 ~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~--~v~~~P~~------------------------------ 536 (881)
++.|+||+||||++||++++++|||++++.+++.+++.++ +++|+|+.
T Consensus 335 ~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w 414 (861)
T TIGR00422 335 PHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVW 414 (861)
T ss_pred eeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEE
Confidence 9999999999999999999999999999999999999987 57777764
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 415 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~ 494 (861)
T TIGR00422 415 YCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVA 494 (861)
T ss_pred EECCCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHH
Confidence
Q ss_pred --------------------------------------------CCCCCCCchHhHHhhhcCC-CCceecChhHHHHHHH
Q 002784 537 --------------------------------------------EAPGYGADVLRLWVSSVDY-TGDVMIGPQVLRQMSD 571 (881)
Q Consensus 537 --------------------------------------------~~~~yGaD~LRlwvas~~~-~~D~~~s~~~l~~~~~ 571 (881)
.+.+||||++|||+++... ++|++|+++.+....+
T Consensus 495 ~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~ 574 (861)
T TIGR00422 495 RMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARN 574 (861)
T ss_pred HHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHH
Confidence 2248999999999987654 8899999999999999
Q ss_pred HHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHh
Q 002784 572 IYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVA 651 (881)
Q Consensus 572 ~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~ 651 (881)
+++||||+.||+.+++.++..- ......+..+|+|+++++++++++++++|++|+|++|++.+++|+++++||||++.+
T Consensus 575 ~~nkl~N~~rf~~~~~~~~~~~-~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~ 653 (861)
T TIGR00422 575 FLNKLWNASRFVLMNLSDDLEL-SGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELV 653 (861)
T ss_pred HHHHHHHHHHHHHhcccccccc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887655210 001123568999999999999999999999999999999999999889999999999
Q ss_pred hccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChh
Q 002784 652 KDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVG 731 (881)
Q Consensus 652 KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~ 731 (881)
|+|+|.+. ...+++++.+|+++|+.+++||||||||+|||||+.|+.. .+||++++||++++.+.+ ++
T Consensus 654 k~~~~~~~--~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~--------~~si~~~~~P~~~~~~~d--~~ 721 (861)
T TIGR00422 654 KYRLYNGN--EAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG--------ADSIMLQSYPVVDAEFVD--EE 721 (861)
T ss_pred HHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCccc--------CCceeecCCCCcccccCC--HH
Confidence 99998653 3457789999999999999999999999999999999743 369999999999887766 56
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCcceEEEEEeCChHHHHHHHHhhccCCchhHhhhhhhccceEEcc
Q 002784 732 EIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLP 806 (881)
Q Consensus 732 ~~~~~~~l~~lr~~v~~~le~~R~~k~i~~sle~~v~I~~~~~~~~~~l~~l~~~~~~~~~L~~l~~vS~V~i~~ 806 (881)
++..++.++++...+ +.+|+...|+.+.+..+.+...++...+.++.. .+.|..++.|++|++..
T Consensus 722 ~e~~~~~l~~ii~~i----R~~r~~~~i~~~~~l~~~i~~~~~~~~~~l~~~------~~~I~~l~~v~~v~~~~ 786 (861)
T TIGR00422 722 AEKAFELLKEIIVSI----RNLKAESNIPPNAPLKVLLIYTEAETAERLKLN------AVDIKGAINFSEVEVVI 786 (861)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHcCCCCCCcceEEEEeCCHHHHHHHHHH------HHHHhhhcCCCceEeec
Confidence 666677776655554 456777777777777776665554444555544 36899999999999865
No 17
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-106 Score=992.31 Aligned_cols=598 Identities=23% Similarity=0.375 Sum_probs=510.5
Q ss_pred CCCCCCCCccccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeecc
Q 002784 115 TTFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194 (881)
Q Consensus 115 t~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~p 194 (881)
|.||+++|+.++|++||++|+++++|++..+. ++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|
T Consensus 4 ~~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~-~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~ 82 (800)
T PRK13208 4 PELPKKYDPEELEEKWQKIWEEEGTYKFDPDE-RKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQ 82 (800)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCccccccc-CCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCC
Confidence 67999999999999999999999999986443 56889999999999999999999999999999999999999999999
Q ss_pred CcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------
Q 002784 195 GWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ------- 267 (881)
Q Consensus 195 GwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q------- 267 (881)
||||||||||.+|++.++.. ..++++++|++.|++|++++++.|+++|++||+++||+|+|+||||+|++++
T Consensus 83 G~D~~Glpie~~~ek~~g~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L 161 (800)
T PRK13208 83 GWDDNGLPTERKVEKYYGIR-KDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDL 161 (800)
T ss_pred CcCCCcchHHHHHHHHhCCC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999876543 3458899999999999999999999999999999999999999999999986
Q ss_pred ecCCceeceeeeEeeecCCCCCcccccccc------------------cCCceEEEecCccccccccceeeeCCCCcEEE
Q 002784 268 YPEGHVSRSIYAVFRMVSAPPSTSGLLNEF------------------LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAV 329 (881)
Q Consensus 268 Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~------------------~~~~~l~iwTTtPwTl~an~av~v~p~~~Y~~ 329 (881)
|++|++ |.+...++||+.+.+.|.+. ..+.+++|||||||||+||+||||||+.+.
T Consensus 162 ~~~Gli----y~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~-- 235 (800)
T PRK13208 162 YKKGLI----YRAEAPVLWCPRCETAIAQAEVEYREREGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDER-- 235 (800)
T ss_pred HHCCCe----eecCcccccCCCCCCccchhhhccccccceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchH--
Confidence 888985 55556777887776655421 124578999999999999999999999531
Q ss_pred EEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecccccccCCEeecCCCCCCcceee
Q 002784 330 VEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVI 409 (881)
Q Consensus 330 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i 409 (881)
.++|.|+++.||++++++|| +
T Consensus 236 ----------------------------------------------------------~~~l~g~~~~~P~~~~~ipi-i 256 (800)
T PRK13208 236 ----------------------------------------------------------YKHLVGKTAIVPLFGVEVPI-L 256 (800)
T ss_pred ----------------------------------------------------------HHHhcCCEEEcCCCCCcceE-E
Confidence 02588999999999999999 7
Q ss_pred cCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccCCCceeccchhHHHHHHHHhcCCccceec
Q 002784 410 GGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEP 489 (881)
Q Consensus 410 ~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~ 489 (881)
+++||++++|||+||++|+||++||.++++||||++++||++|++++++|+|.|+++ .+|++.|++.|+++|.+++.+.
T Consensus 257 ~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~-~~a~~~i~~~L~~~g~~~~~~~ 335 (800)
T PRK13208 257 ADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTI-EEARKKIVEDLKSGGLLGKQEP 335 (800)
T ss_pred CCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCH-HHHHHHHHHHHHhCCCeeceee
Confidence 899999999999999999999999999999999999999999999999999999999 5999999999999999999999
Q ss_pred cccccccccCCCCCeEEeeccccccchhhHHHHHHHhhccccccCCC---------------------------------
Q 002784 490 YEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ--------------------------------- 536 (881)
Q Consensus 490 ~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~--------------------------------- 536 (881)
+.|+||+||||++||++++++|||++++++++++++.+++++|+|++
T Consensus 336 ~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~ 415 (800)
T PRK13208 336 IKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYC 415 (800)
T ss_pred eeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEe
Confidence 99999999999999999999999999999999999988776665432
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 416 ~~~g~~~~~~~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~D 495 (800)
T PRK13208 416 KDCGHPILPDEEDLPVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHD 495 (800)
T ss_pred CCCCCeecCchhhhccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecc
Confidence
Q ss_pred ---------------------------------------------------CCCCCCCchHhHHhhhcCCCCceecChhH
Q 002784 537 ---------------------------------------------------EAPGYGADVLRLWVSSVDYTGDVMIGPQV 565 (881)
Q Consensus 537 ---------------------------------------------------~~~~yGaD~LRlwvas~~~~~D~~~s~~~ 565 (881)
++++||+|++|||++++.+.+|++|+++.
T Consensus 496 i~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~ 575 (800)
T PRK13208 496 IIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQ 575 (800)
T ss_pred hhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCCCCCCceecHHH
Confidence 22489999999999988899999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhH
Q 002784 566 LRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSN 645 (881)
Q Consensus 566 l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~ 645 (881)
++.+.++++||||++||++. +.+. ....+...+...|+|++++++.+++++.++|++|+|++|++.+++|+++++||
T Consensus 576 ~~~~~~~l~kl~N~~r~~~~-~~~~--~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n 652 (800)
T PRK13208 576 VKIGRRLLTKLWNASRFVLH-FSAD--PEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCD 652 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cccc--cccCccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999873 3321 01111234578999999999999999999999999999999999999989999
Q ss_pred HHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhc
Q 002784 646 FYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKW 725 (881)
Q Consensus 646 ~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~ 725 (881)
+|++.+|+|+|.+..++ .+++++++|+++|+.+++||+|||||+|||||+.|+ . +||++++||+.++.+
T Consensus 653 ~Yie~~k~~~~~~~~~~-~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~-~---------~si~~~~wP~~~~~~ 721 (800)
T PRK13208 653 DYLELVKSRAYGEDEEE-EQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY-G---------GSVHRASWPEPDEEL 721 (800)
T ss_pred HHHHHhhHHhcCCCCcH-HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC-C---------CceEeccCCCCCccc
Confidence 99999999999865433 367899999999999999999999999999999996 2 489999999987665
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCcceEEEEEeCChHHHHHHHHhhccCCchhHhhhhhhccceEEc
Q 002784 726 RTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVL 805 (881)
Q Consensus 726 ~~~~~~~~~~~~~l~~lr~~v~~~le~~R~~k~i~~sle~~v~I~~~~~~~~~~l~~l~~~~~~~~~L~~l~~vS~V~i~ 805 (881)
.+ ++++..++.++++...+ +.+|+...++...+..+.+...++. .+.++.+. +.|+++++|++|++.
T Consensus 722 ~~--~~~~~~~~~v~~ii~~i----R~~r~~~~i~~~~~l~~~~~~~~~~-~~~~~~~~------~~l~~~~~~~~v~~~ 788 (800)
T PRK13208 722 ID--EEDEELGELAKEILSAV----RKYKSEAGLSLNAPLKKVEVYGPAD-LELLEAAE------EDLKAAGNIEELELV 788 (800)
T ss_pred cc--HHHHHHHHHHHHHHHHH----HHHHHHcCCCcCCccceEEEecchH-HHHHHHHH------HHHHHHhCcCeEEEe
Confidence 43 44445555554444333 3445444444333433333333444 56666553 689999999999997
Q ss_pred cC
Q 002784 806 PS 807 (881)
Q Consensus 806 ~~ 807 (881)
.+
T Consensus 789 ~~ 790 (800)
T PRK13208 789 EG 790 (800)
T ss_pred cC
Confidence 63
No 18
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.8e-103 Score=974.00 Aligned_cols=605 Identities=21% Similarity=0.314 Sum_probs=490.5
Q ss_pred CCCCCCCCccccchHHHHHHHhCCCccccccCC---CCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeee
Q 002784 115 TTFGMRANALVREPEIHKLWDDHQVFLRVADKN---DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVR 191 (881)
Q Consensus 115 t~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~~~---~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~ 191 (881)
-.++||+++.++|++||++|+++++|++..+.+ ++++|++|+|||||||.||||||+|++++||++|||||+||+|+
T Consensus 7 ~~~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vl 86 (1084)
T PLN02959 7 KSTARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVL 86 (1084)
T ss_pred cCCchhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccC
Confidence 357999999999999999999999999975422 34789999999999999999999999999999999999999999
Q ss_pred eccCcCCCCcHHHHHHHHhc------ccc---------------------cccCCChHHHHHHHHHHHHH----------
Q 002784 192 YVPGWDCHGLPIELKVLQSL------DED---------------------AKKDLTPSKLRAKAAKFAKA---------- 234 (881)
Q Consensus 192 ~~pGwD~hGLPiE~~a~k~l------~~~---------------------~~~~~~p~~~~~~~~~~a~~---------- 234 (881)
|+|||||||||||..|+|.. |.. ...++++.+|+++|++++.+
T Consensus 87 fp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~ 166 (1084)
T PLN02959 87 LPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEI 166 (1084)
T ss_pred CCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHH
Confidence 99999999999999987642 211 12346788999999999877
Q ss_pred -------------------HH----HHHHHHHHHhccccccCCCccCCc--cchhhce-------ecCCceeceeeeEee
Q 002784 235 -------------------TV----KAQMASFKRYGVWADWNNPYLTLD--PEYEAAQ-------YPEGHVSRSIYAVFR 282 (881)
Q Consensus 235 -------------------~i----~~~~~~f~rlGi~~DW~~~y~T~d--p~y~~~q-------Y~~g~~s~siy~~f~ 282 (881)
++ ..|+++|++||+++||+|+|.||| |.|+++| |++|++++ +.+
T Consensus 167 ~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~----g~r 242 (1084)
T PLN02959 167 MRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVK----DKR 242 (1084)
T ss_pred HhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEe----cCe
Confidence 33 678999999999999999999999 9999986 67777544 444
Q ss_pred ecCCCCCccccccc------------------c--------------cCCceEEEecCccccccccceeeeCCCCcEEEE
Q 002784 283 MVSAPPSTSGLLNE------------------F--------------LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVV 330 (881)
Q Consensus 283 ~~~~~~~~~~~l~~------------------~--------------~~~~~l~iwTTtPwTl~an~av~v~p~~~Y~~v 330 (881)
.+.||+.+.+.+.+ + ..+.++++|||||||||||+||||||+.+|+++
T Consensus 243 pv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~ 322 (1084)
T PLN02959 243 YTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAY 322 (1084)
T ss_pred eeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEE
Confidence 44555543322110 0 124789999999999999999999999999999
Q ss_pred EEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHH--hCC--ceEEEEecccccccCCEeecCCCCCC-c
Q 002784 331 EIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAK--WGT--KLVIKKTLAGSDLENCRYVHPVDNRQ-C 405 (881)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~--~~~--~~~i~~~~~G~~L~g~~~~~Pl~~~~-~ 405 (881)
++++ ++.||++++++.++.-+ .+. +++++.+++|++|+|+.|.||+++++ +
T Consensus 323 ~~~~------------------------~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i 378 (1084)
T PLN02959 323 EIND------------------------TEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVI 378 (1084)
T ss_pred EecC------------------------CeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcce
Confidence 9852 58999999988865432 111 57899999999999999999999877 8
Q ss_pred ceeecCccccccCCCCceecCCCCChhHHHH----------HHHhCC--------CceeccCCCCc--------------
Q 002784 406 PVVIGGDYITTESGTGLVHTAPGHGQEDYVT----------SLKYGL--------PILSPVDDEGK-------------- 453 (881)
Q Consensus 406 pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~----------~~k~gL--------~~~~~vd~~G~-------------- 453 (881)
|| +|+.||+++.|||+||+|||||++||.+ +++||| +++.+||.+|.
T Consensus 379 ~i-lp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i 457 (1084)
T PLN02959 379 YA-LPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKI 457 (1084)
T ss_pred eE-eceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcc
Confidence 88 8999999999999999999999999998 577898 45778887764
Q ss_pred --------------------cccc---cccCCCceeccchhHHHHHHHHhcCCccc-eeccccccccccCCCCCeEEeec
Q 002784 454 --------------------FTEE---AGKFSGLDVLGDGNVAVVKYLDEQMSLIM-EEPYEHKYPYDWRTKKPTIFRAT 509 (881)
Q Consensus 454 --------------------~~~~---~~~~~G~~v~~~a~~~ii~~L~~~g~l~~-~~~~~h~yp~~wRt~~Pii~r~t 509 (881)
|++. +|+|.|++| .+|++.|++.|+++|+++. .++ ..|+||||++||+++++
T Consensus 458 ~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v-~eAr~~Ii~~L~~~G~l~~~~ep---~~pv~~R~g~~~~v~l~ 533 (1084)
T PLN02959 458 KSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKV-QEAKPLIKKKLIEAGQAILYSEP---EKKVMSRSGDECVVALT 533 (1084)
T ss_pred cccchhhHHHHHhhhhhhhccccccccCcCcCCcCH-HHHHHHHHHHHHhCCCceeeeEc---CCCeEECCCCEEEEeec
Confidence 4444 578999999 5999999999999998774 453 35899999999999999
Q ss_pred cccccchh--hHHHHHHHhhccccccCCC---------------------------------------------------
Q 002784 510 EQWFASVE--GFRQAAMDAIGQVKWVPPQ--------------------------------------------------- 536 (881)
Q Consensus 510 ~QWFi~~~--~lk~~al~~i~~v~~~P~~--------------------------------------------------- 536 (881)
+|||++++ .||+.+++++++|+|+|++
T Consensus 534 ~QWFi~~~~~~~k~~a~~~l~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~ 613 (1084)
T PLN02959 534 DQWYLTYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVA 613 (1084)
T ss_pred CCeeEECCchHHHHHHHHHHcccEEECHHHHHHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHH
Confidence 99999997 7999999999999999887
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 614 ~~~~~~~~~g~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~ 693 (1084)
T PLN02959 614 HLLQGGDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSSDIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNH 693 (1084)
T ss_pred HHHhhhhccCCccccCChhhcCccceeEeecCCCcccccCCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------CCCCCCCchHhHHhhhc-CCCCceecChhHHHHHHHHHHHHh
Q 002784 537 --------------------------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKLR 577 (881)
Q Consensus 537 --------------------------------------~~~~yGaD~LRlwvas~-~~~~D~~~s~~~l~~~~~~~~Kl~ 577 (881)
++++||||++|||++++ ++.+|++|+++.++ ..+++++
T Consensus 694 ~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n---~~~~~l~ 770 (1084)
T PLN02959 694 TAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETAN---AAILRLT 770 (1084)
T ss_pred HHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHH---HHHHHHH
Confidence 23599999999999866 77789999988765 5788899
Q ss_pred hHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHH-HHHhhc--c
Q 002784 578 GTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFY-FDVAKD--R 654 (881)
Q Consensus 578 Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Y-l~~~Kd--r 654 (881)
|+++|+.+++.... ...+...+..+|+|++++|+.++++++++|++|+|++|++.. || |+.+|+ |
T Consensus 771 n~~~~~~~~~~~~~--~~~~~~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~~----------~Yel~~~k~~yr 838 (1084)
T PLN02959 771 KEIAWMEEVLAAES--SLRTGPPSTYADRVFENEINIAIAETEKNYEAMMFREALKSG----------FYDLQAARDEYR 838 (1084)
T ss_pred HHHHHHHHhhhhhc--ccCCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH----------HHHHHHhHHHHh
Confidence 99988777654210 001122356899999999999999999999999999999953 56 777887 8
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChhhHH
Q 002784 655 LYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIY 734 (881)
Q Consensus 655 Ly~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~ 734 (881)
+|++.. ..++++|+++|+.+++||||||||+|||||++|.+. .+||++++||.++.. + ++++.
T Consensus 839 ~~~~~~-----~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~--------~~sI~~~~wP~~~~~--d--~~~e~ 901 (1084)
T PLN02959 839 LSCGSG-----GMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKK--------EGFAVTAGWPVAGEP--D--LTLKR 901 (1084)
T ss_pred hccccc-----hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCC--------CCeEEecCCCCCCcc--C--HHHHH
Confidence 887532 146789999999999999999999999999999532 368999999987632 3 33333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhhcCcCCCC-----cceEEEEEeCCh---HHHHHHHHhh
Q 002784 735 ----FWGKILELRTEVNKVLEVARTGKLIGSS-----LEAKVYLFTDDA---SLASRLREMC 784 (881)
Q Consensus 735 ----~~~~l~~lr~~v~~~le~~R~~k~i~~s-----le~~v~I~~~~~---~~~~~l~~l~ 784 (881)
.++.+..+|+.++...+..|.+|.++.+ .+.+|+|+++++ ++.+.|+.+.
T Consensus 902 ~~~~l~~~i~~iR~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~IyVA~~yp~Wq~~~l~~l~ 963 (1084)
T PLN02959 902 ANKYLQDSIVSFRKLLQKQLAGSKKAKKGGAPVTLPEKKLAGLIYVAEKYDGWKEECLRILQ 963 (1084)
T ss_pred HHHHHHHHHHHHHHhHHHhchhhhhcCCCCCCcccccCcceEEEEECCCChHHHHHHHHHHH
Confidence 3455677777777777777776665543 234588999877 6666665553
No 19
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=7e-98 Score=921.95 Aligned_cols=587 Identities=19% Similarity=0.303 Sum_probs=490.1
Q ss_pred ccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHH
Q 002784 125 VREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIE 204 (881)
Q Consensus 125 ~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE 204 (881)
++|++||++|+++++|++..+ ++++|++++|||||||.|||||++|++++|+++||+||+||+|+|+|||||||||||
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~--~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~ 79 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD--DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPIL 79 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC--CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchH
Confidence 589999999999999998643 468899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc--------ccccCCChHHHHHHH--HHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------
Q 002784 205 LKVLQSLDE--------DAKKDLTPSKLRAKA--AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ------- 267 (881)
Q Consensus 205 ~~a~k~l~~--------~~~~~~~p~~~~~~~--~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q------- 267 (881)
..|++.... ....++++++|.+.| ++|++++...++++|++||+++||+|+|.||||.|.+++
T Consensus 80 ~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L 159 (938)
T TIGR00395 80 GLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKL 159 (938)
T ss_pred HHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHH
Confidence 988874321 123568899999998 999999999999999999999999999999999999985
Q ss_pred ecCCceeceeeeEeeecCCCCCccccccc------------------c-cC--CceEEEecCccccccccceeeeCCCCc
Q 002784 268 YPEGHVSRSIYAVFRMVSAPPSTSGLLNE------------------F-LP--DLGLAVWTTTPWTVPANAAVAVNAKLQ 326 (881)
Q Consensus 268 Y~~g~~s~siy~~f~~~~~~~~~~~~l~~------------------~-~~--~~~l~iwTTtPwTl~an~av~v~p~~~ 326 (881)
|++|++++ +...++||+.+.+.+.+ | +. +.++++||||||||+||+||||||+.+
T Consensus 160 ~e~G~iy~----g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~ 235 (938)
T TIGR00395 160 KELGLIVK----GEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTIT 235 (938)
T ss_pred HHCCCEec----CCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCc
Confidence 88898644 44556666655543210 1 12 248999999999999999999999999
Q ss_pred EEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecccccccCCEeecCCCCCCcc
Q 002784 327 YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCP 406 (881)
Q Consensus 327 Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~~~~p 406 (881)
|++++.+ ++.||+++++++++..+ +..++++.+++|++|+|++|.||++++.+|
T Consensus 236 Y~~~~~~-------------------------~e~~i~s~~~~~~~~~q-~~~~~~~~~~~g~~l~G~~~~~P~~~~~ip 289 (938)
T TIGR00395 236 YVIAEVG-------------------------GEKWITSKEAFENLSYQ-KLKYKPIEEVPGKQFIGKKVHNPVVGPEVP 289 (938)
T ss_pred EEEEEeC-------------------------CcEEEEeHHHHHhhhhc-ccceeEEEEEchHhccCCEEECCCCCCeeE
Confidence 9999875 58999999999998766 456889999999999999999999999999
Q ss_pred eeecCccccccCCCCceecCCCCChhHHHHHHHh-------C-------CCceecc--CC--------------------
Q 002784 407 VVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKY-------G-------LPILSPV--DD-------------------- 450 (881)
Q Consensus 407 i~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~-------g-------L~~~~~v--d~-------------------- 450 (881)
| ++++||++++|||+||++||||++||.+++++ | ++++.++ |+
T Consensus 290 i-l~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d 368 (938)
T TIGR00395 290 I-LPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKD 368 (938)
T ss_pred E-eecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchh
Confidence 9 88999999999999999999999999999864 3 3444443 33
Q ss_pred -----------------CCccccccccCCCceeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEe-ecccc
Q 002784 451 -----------------EGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFR-ATEQW 512 (881)
Q Consensus 451 -----------------~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r-~t~QW 512 (881)
+|.++..+++|.|++| .+|++.|++.|+++|.++....+. .+|+||||++||+++ +++||
T Consensus 369 ~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v-~ear~~i~~~L~~~g~~~~~~~~~-~~~v~~R~g~~~vv~~~~~QW 446 (938)
T TIGR00395 369 KNLLEEATKILYKEEYHTGVMIYNIPPYKGMKV-SEAKEKVKADLIDAGLADVMYEFS-ESPVICRCGTDCIVKVVEDQW 446 (938)
T ss_pred hhHHHHHHHHHhhhhccCceeccCCcccCCcCH-HHhHHHHHHHHHHCCCceEeeecC-CCCcEecCCCeEEEeccCCCC
Confidence 3555656678999999 599999999999999999876653 368899999999998 99999
Q ss_pred ccchh--hHHHHHHHhhccccccCCC------------------------------------------------------
Q 002784 513 FASVE--GFRQAAMDAIGQVKWVPPQ------------------------------------------------------ 536 (881)
Q Consensus 513 Fi~~~--~lk~~al~~i~~v~~~P~~------------------------------------------------------ 536 (881)
|++++ .|++.+++++++++|+|+.
T Consensus 447 Fi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l 526 (938)
T TIGR00395 447 FVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYL 526 (938)
T ss_pred eEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHHhhhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHh
Confidence 99998 5999999998888877765
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 527 ~~~~~~~~~l~~ev~D~~~~~~~~~~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk 606 (938)
T TIGR00395 527 NKDYYGNEQMTDEFFDYIFLGKGDVKNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPR 606 (938)
T ss_pred hccCCChHHCCcccCceEEECCCChhhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccccCc
Confidence
Q ss_pred ---------------------------CCCCCCCchHhHHhhhc-CCCCceecChhHHHHHHHHHHHHhhHHHHHHhccc
Q 002784 537 ---------------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLH 588 (881)
Q Consensus 537 ---------------------------~~~~yGaD~LRlwvas~-~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~ 588 (881)
++++||||++|||++++ ++++|++|+++.+..+.+.+.+++|+++++++...
T Consensus 607 ~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~ 686 (938)
T TIGR00395 607 GIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESN 686 (938)
T ss_pred EEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 23599999999999865 78999999999999998999999999998765432
Q ss_pred CCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHH-HHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHH
Q 002784 589 DWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIF-QIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRS 667 (881)
Q Consensus 589 ~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~-~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s 667 (881)
+. . ...+...|+|+++++++++++++++|++|+|++|+ ..+++|++. +++|++..+++
T Consensus 687 ---~~-~--~~~~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~--~n~Yl~~~~~~------------- 745 (938)
T TIGR00395 687 ---LE-T--GEETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQAD--VDWYRRRGGVN------------- 745 (938)
T ss_pred ---cC-C--CccCChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HHHHHHhCcch-------------
Confidence 11 0 11346789999999999999999999999999999 678888864 79998864321
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChhhHHHHHHHHHHHHHHH
Q 002784 668 CQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVN 747 (881)
Q Consensus 668 ~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~ 747 (881)
...+|.++++.+++||+|||||+|||||+.|+. .+||++++||++++.+.+ ++++..++.++++..+|+
T Consensus 746 ~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~---------~~sv~~~~wP~~~~~~~d--~~~~~~~~~~~~~i~~iR 814 (938)
T TIGR00395 746 HKDVLARYLETWIKLLAPFAPHFAEEMWEEVGN---------EGFVSLAKFPEASEPAVD--KEVEAAEEYLRNLVRDIQ 814 (938)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCC---------CCeEEecCCCCCCcccCC--HHHHHHHHHHHHHHHHHH
Confidence 234799999999999999999999999999964 369999999999887655 566666666666654444
Q ss_pred HHHHHHhhcCcCCCCcceEEEEEeCChHHHHHHHHhhc
Q 002784 748 KVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCT 785 (881)
Q Consensus 748 ~~le~~R~~k~i~~sle~~v~I~~~~~~~~~~l~~l~~ 785 (881)
+ ...+....+.+|+|++++++..+.|..+..
T Consensus 815 ~-------~~~~~~~~p~~~~i~~~~~w~~~~~~~~~~ 845 (938)
T TIGR00395 815 E-------IAKIDASKPKRVYLYTSEDWKSQCLKIVAE 845 (938)
T ss_pred H-------hhccCCCCCcEEEEEECcHHHHHHHHHHHH
Confidence 3 334555556788899988887777766643
No 20
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-96 Score=813.20 Aligned_cols=642 Identities=25% Similarity=0.454 Sum_probs=526.8
Q ss_pred CCCccccchHHHHHHHhCCCcccccc-CCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCC
Q 002784 120 RANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDC 198 (881)
Q Consensus 120 r~n~~~~E~~~~~~W~~~~~y~~~~~-~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~ 198 (881)
..|+++-|.++.++|.+.+.|+.+.+ ..++|+|.+.||||+|+|.+|.||.+..+|||++.||..|+||.|-..+||||
T Consensus 7 n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~ 86 (1070)
T KOG0434|consen 7 NFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDT 86 (1070)
T ss_pred cCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeeccccc
Confidence 35667789999999999999987654 34679999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhccccccc---CCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------e
Q 002784 199 HGLPIELKVLQSLDEDAKK---DLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------Y 268 (881)
Q Consensus 199 hGLPiE~~a~k~l~~~~~~---~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y 268 (881)
||||+|..+.|+|+...+. .++..+...+||..+.++..++++...|||-|+|+++-|.||+|.|...+ +
T Consensus 87 HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~ 166 (1070)
T KOG0434|consen 87 HGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELH 166 (1070)
T ss_pred CCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHH
Confidence 9999999999999866443 34667788999999999999999999999999999999999999998865 5
Q ss_pred cCCceeceeeeEeeecCCCCCcccccccc----------------------cCCceEEEecCccccccccceeeeCCCCc
Q 002784 269 PEGHVSRSIYAVFRMVSAPPSTSGLLNEF----------------------LPDLGLAVWTTTPWTVPANAAVAVNAKLQ 326 (881)
Q Consensus 269 ~~g~~s~siy~~f~~~~~~~~~~~~l~~~----------------------~~~~~l~iwTTtPwTl~an~av~v~p~~~ 326 (881)
++|.+ |.+|++-.....|.+-|..| -.++.+++|||||||||+|.|+||||++.
T Consensus 167 ~kglV----YRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~ 242 (1070)
T KOG0434|consen 167 EKGLV----YRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQ 242 (1070)
T ss_pred hcCce----ecceeeeccccccCCcccchhcccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCeE
Confidence 56663 44444432222222211111 13589999999999999999999999999
Q ss_pred EEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHh-CCceEEEEecccccccCCEeecCCC----
Q 002784 327 YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKW-GTKLVIKKTLAGSDLENCRYVHPVD---- 401 (881)
Q Consensus 327 Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~-~~~~~i~~~~~G~~L~g~~~~~Pl~---- 401 (881)
|++++-.. .+..||+.++++..+.+.. ...++|+..+.|++|.|++|..+|.
T Consensus 243 Yvki~dk~-----------------------~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~ 299 (1070)
T KOG0434|consen 243 YVKIKDKT-----------------------TGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAE 299 (1070)
T ss_pred EEEEEecc-----------------------CCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHH
Confidence 99887542 3689999999988887643 2368899999999999999997763
Q ss_pred --CCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCC-----CceeccCCCCccccccccCCCceeccchhHHH
Q 002784 402 --NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL-----PILSPVDDEGKFTEEAGKFSGLDVLGDGNVAV 474 (881)
Q Consensus 402 --~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL-----~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~i 474 (881)
++...-++.++||+.+.|||+||+||+.|.+||.+|..+|| -++||||++|+||.+..+|+|..| +||.+.|
T Consensus 300 ~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YV-KDaDK~I 378 (1070)
T KOG0434|consen 300 TFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYV-KDADKLI 378 (1070)
T ss_pred HhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccccccceee-ccchHHH
Confidence 23344448899999999999999999999999999999987 457899999999999999999999 7999999
Q ss_pred HHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhccccccCCC------------------
Q 002784 475 VKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ------------------ 536 (881)
Q Consensus 475 i~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~------------------ 536 (881)
|+.|++.|.|+....+.|+||+||||++|+|||+.|.||++++.+.++++++..+..|+|..
T Consensus 379 i~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~i 458 (1070)
T KOG0434|consen 379 IRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMKTHWVPQNIKEKRFANWLKNARDWNI 458 (1070)
T ss_pred HHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhcccccccCChhhhHHHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 459 SRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq 538 (1070)
T KOG0434|consen 459 SRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQ 538 (1070)
T ss_pred ccccccCCCcceEEccCCceEEEeccHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchh
Confidence
Q ss_pred ----------------------------------------------------------------------------CCCC
Q 002784 537 ----------------------------------------------------------------------------EAPG 540 (881)
Q Consensus 537 ----------------------------------------------------------------------------~~~~ 540 (881)
++.+
T Consensus 539 ~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iink 618 (1070)
T KOG0434|consen 539 RHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINK 618 (1070)
T ss_pred hcCCccchHHHhhcCchHhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHh
Confidence 3459
Q ss_pred CCCchHhHHhhhcCC--CCceecChhHHHHH-HHHHHHHhhHHHHHHhcccC--------CCCCCccCCCCCCHhHHHHH
Q 002784 541 YGADVLRLWVSSVDY--TGDVMIGPQVLRQM-SDIYRKLRGTLRYLLGNLHD--------WRVGNSISYDDLPMIDQYAL 609 (881)
Q Consensus 541 yGaD~LRlwvas~~~--~~D~~~s~~~l~~~-~~~~~Kl~Nt~rf~l~nl~~--------f~~~~~~~~~~l~~~Dr~il 609 (881)
||||+||||+.++.. .....|.++-++.+ .+.+.-+||.+||+.+|..- |.+.+.++ ....+||||+
T Consensus 619 YGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~--S~NvmDrWI~ 696 (1070)
T KOG0434|consen 619 YGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVT--SSNVMDRWIL 696 (1070)
T ss_pred hcchheeeeeecCccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccc--cchhHHHHHH
Confidence 999999999887654 35899999988754 67888899999999988642 33322322 3457999999
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccch
Q 002784 610 FQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPH 689 (881)
Q Consensus 610 ~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~ 689 (881)
+.++.++.-+++.|+.|+...++-.+..|+ ++|+|||+...+.||-.+... .+-..|..+|..+|-+++++||||.||
T Consensus 697 a~~qslv~fv~~eM~~YrLytVvp~llkfi-D~LTNwYiR~nRrrlkGe~G~-~d~~~AL~~Lf~vL~t~~r~MaPfTPF 774 (1070)
T KOG0434|consen 697 ASTQSLVGFVREEMDQYRLYTVVPRLLKFI-DELTNWYIRFNRRRLKGENGE-HDCHNALNVLFEVLFTLVRVMAPFTPF 774 (1070)
T ss_pred HHHHHHHHHHHHHHHheehhhhHHHHHHHH-HHhhhhheehhhhhhcCCCch-HHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 999999999999999999999999999998 679999999999998654432 233467788999999999999999999
Q ss_pred hHHHHHHhCCccc-cccCCCCCcceeecCCCCcchhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhcC--cCCCCcceE
Q 002784 690 LAEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGK--LIGSSLEAK 766 (881)
Q Consensus 690 ~aEEiw~~L~~~~-~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~R~~k--~i~~sle~~ 766 (881)
++|.+||+|.... ....+....|||...+|.+.++..+ +..+...+..+++.+.++ ..|..+ .++.+|..-
T Consensus 775 ~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~d--e~ve~~v~~m~siIdl~R----~iRern~islKtPLK~~ 848 (1070)
T KOG0434|consen 775 FTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELID--ETVERRVERMQSIIDLAR----NIRERNTISLKTPLKEL 848 (1070)
T ss_pred HHHHHHHHHHhcCCccccCCccceeEEeecCCchhhhcc--chHHHHHHHHHHHHHHHH----HHhhccCCcccCchhhe
Confidence 9999999995421 1122333579999999999888765 444445555555444433 334333 455666666
Q ss_pred EEEEeCChHHHHHHHHhhccCCchhHhhhhhhccceEEcc
Q 002784 767 VYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLP 806 (881)
Q Consensus 767 v~I~~~~~~~~~~l~~l~~~~~~~~~L~~l~~vS~V~i~~ 806 (881)
|+|.. +++.++-++.|. ..+.+=|+|-+|.+.+
T Consensus 849 ivi~~-d~~~ledik~l~------~yI~eElNVr~v~~~~ 881 (1070)
T KOG0434|consen 849 IVIHS-DEEYLEDIKSLE------RYILEELNVREVVFTS 881 (1070)
T ss_pred EEEcC-CHHHHHHHHHHH------HHHHHhhcceeeeecc
Confidence 66654 566666666663 4566667888887765
No 21
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-94 Score=825.66 Aligned_cols=609 Identities=25% Similarity=0.391 Sum_probs=523.3
Q ss_pred cccccCCCCCCCCCCCccccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhC
Q 002784 107 KHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186 (881)
Q Consensus 107 ~~tl~lp~t~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~ 186 (881)
+-+..+|+..+| ...|..|..+|++++.|++....+.++.|.+..|||+++|.||||||++.++.|.++||+||+
T Consensus 37 ~~~~~~~~~y~p-----~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~ 111 (995)
T KOG0432|consen 37 DLSGPLPAAYSP-----AYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMH 111 (995)
T ss_pred ccCCcccccCCc-----cchHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhc
Confidence 345667766544 789999999999999998875545678999999999999999999999999999999999999
Q ss_pred CCeeeeccCcCCCCcHHHHHHHHhcc---cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccch
Q 002784 187 NYKVRYVPGWDCHGLPIELKVLQSLD---EDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEY 263 (881)
Q Consensus 187 G~~V~~~pGwD~hGLPiE~~a~k~l~---~~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y 263 (881)
||.|+|+||+||+|+.++..++|.+. ...+.++++++|.+++++|.+++-..+.+|+++||.++||+|.++||||..
T Consensus 112 G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~ 191 (995)
T KOG0432|consen 112 GYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKL 191 (995)
T ss_pred CCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHH
Confidence 99999999999999999999998873 345678999999999999999999999999999999999999999999999
Q ss_pred hhce-------ecCCceeceeeeEeeecCCCCCccccccc------------------------c-----------cCCc
Q 002784 264 EAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNE------------------------F-----------LPDL 301 (881)
Q Consensus 264 ~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~------------------------~-----------~~~~ 301 (881)
.+++ |++|. ||..-+++|||+.+.+.+.. | -++.
T Consensus 192 s~AV~eAFvrL~eegl----IyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~ 267 (995)
T KOG0432|consen 192 SRAVTEAFVRLHEEGL----IYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDE 267 (995)
T ss_pred HHHHHHHHHHHHhcCc----eEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCC
Confidence 9886 78888 46666788888765543311 0 1345
Q ss_pred eEEEecCccccccccceeeeCCCC-cEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCce
Q 002784 302 GLAVWTTTPWTVPANAAVAVNAKL-QYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKL 380 (881)
Q Consensus 302 ~l~iwTTtPwTl~an~av~v~p~~-~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~ 380 (881)
.++|.||||+||+|.+||||||++ .|
T Consensus 268 ~i~VaTTRpET~lGDvAvAVhP~D~RY----------------------------------------------------- 294 (995)
T KOG0432|consen 268 EIVVATTRPETILGDVAVAVHPDDDRY----------------------------------------------------- 294 (995)
T ss_pred eEEEecCCccccccceeEEeCCCCccc-----------------------------------------------------
Confidence 899999999999999999999986 33
Q ss_pred EEEEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCcccccccc
Q 002784 381 VIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGK 460 (881)
Q Consensus 381 ~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~ 460 (881)
+.|.|+.+.|||+++.+|| |.+.+|++++|||+|+++|||+++||+++++|||+.+++++++|.+++.+|+
T Consensus 295 --------k~lhGk~~~hP~~~r~lPi-I~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~ge 365 (995)
T KOG0432|consen 295 --------KHLHGKFVKHPFTGRKLPI-ICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGE 365 (995)
T ss_pred --------ccccCceeecCCCCCccce-eecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchh
Confidence 2467889999999999999 6789999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhc--cccccCCC--
Q 002784 461 FSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--QVKWVPPQ-- 536 (881)
Q Consensus 461 ~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~--~v~~~P~~-- 536 (881)
|.||+.| +||++|++.|++.|++...++.....|.|.||+..|++++.+|||++++.|.++|+++++ +++++|+.
T Consensus 366 f~Gm~RF-eAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~ 444 (995)
T KOG0432|consen 366 FKGMKRF-EAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHE 444 (995)
T ss_pred ccCcHHH-HHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECchHHH
Confidence 9999997 899999999999999999999999999999999999999999999999999999999998 68888877
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 445 k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS 524 (995)
T KOG0432|consen 445 KEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSS 524 (995)
T ss_pred HHHHHHHhhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 525 ~L~PfS~lGWP~~t~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDP 604 (995)
T KOG0432|consen 525 GLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDP 604 (995)
T ss_pred ccccchhcCCccccccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeechhhccccccccchhhccccCH
Confidence
Q ss_pred ---------------------------------------CCCCCCCchHhHHhhhcCC-CCceecChhHHHHHHHHHHHH
Q 002784 537 ---------------------------------------EAPGYGADVLRLWVSSVDY-TGDVMIGPQVLRQMSDIYRKL 576 (881)
Q Consensus 537 ---------------------------------------~~~~yGaD~LRlwvas~~~-~~D~~~s~~~l~~~~~~~~Kl 576 (881)
.+|++|+|+|||.+++... ++|++++...+.....+.+||
T Consensus 605 lDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKl 684 (995)
T KOG0432|consen 605 LDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKL 684 (995)
T ss_pred HHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHH
Confidence 5689999999999988765 469999999999999999999
Q ss_pred hhHHHHHHhcccC-CCCCC--ccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhc
Q 002784 577 RGTLRYLLGNLHD-WRVGN--SISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD 653 (881)
Q Consensus 577 ~Nt~rf~l~nl~~-f~~~~--~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~Kd 653 (881)
||+.||.++.+.+ |.|.. .+...+.. +|+||+++|+..++++.+.|+.|+|+.|.+++++|+..+||+.|++.+|+
T Consensus 685 WNa~rF~l~~lg~~~~p~~~~~~~~~~~~-~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp 763 (995)
T KOG0432|consen 685 WNATRFALQRLGENFVPSPTEDLSGNESL-VDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKP 763 (995)
T ss_pred HHHHHHHHHhcccCCCCCcccccCCCcch-hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999987654 66652 22222222 99999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChhhH
Q 002784 654 RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEI 733 (881)
Q Consensus 654 rLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~ 733 (881)
-+|.+. ...+..++.||+.+|+..++||||||||+|||+||+||.. .+....|++.++||...+.|.+ ++++
T Consensus 764 ~l~~~~--~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~r----~~~~~~si~va~yP~~~~~~~~--~e~E 835 (995)
T KOG0432|consen 764 LLWGDS--EALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRR----KGSKPASISVSPYPSSNELWRN--EELE 835 (995)
T ss_pred HhcCCc--HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcccC----CCCCCCceEecCCCchhcccCC--HHHH
Confidence 888654 3456678899999999999999999999999999999864 2223458999999977788877 6677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcCCCCcceEEEEEeCChHHHHHHHHhhccCCchhHhhhhhhccceEEcc
Q 002784 734 YFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLP 806 (881)
Q Consensus 734 ~~~~~l~~lr~~v~~~le~~R~~k~i~~sle~~v~I~~~~~~~~~~l~~l~~~~~~~~~L~~l~~vS~V~i~~ 806 (881)
..++.+.++- ..++.+|+...+..+.+..|.|..+++.....++.+ .+.|..+-..+.|.+..
T Consensus 836 ~~~~~v~~i~----~~iRslra~y~l~~~~~~~v~~~~s~~~~~~~~~~~------~~~i~~l~~~~~v~i~~ 898 (995)
T KOG0432|consen 836 SAFELVLAIT----RAIRSLRAEYNLSPKPRGSVFIASSDEEDKSILKEF------LDEISTLTNLELVSISS 898 (995)
T ss_pred HHHHHHHHHH----HHHHHHHHhcCCCCCCceEEEEecCCCcchhHHHHH------HHHHHHhhccceeEecc
Confidence 7777765554 455677777666654466666665444333445544 25777788888888876
No 22
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.6e-93 Score=876.62 Aligned_cols=546 Identities=23% Similarity=0.361 Sum_probs=463.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccc--------cccCCChHHHHHH--HHHHHHH
Q 002784 165 LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDED--------AKKDLTPSKLRAK--AAKFAKA 234 (881)
Q Consensus 165 lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~--------~~~~~~p~~~~~~--~~~~a~~ 234 (881)
|||||++|++++|+++||+||+||+|+|+|||||||||||..|++..... ...+++..++.+. |++|+++
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 79999999999999999999999999999999999999999987532111 1125666666654 5999999
Q ss_pred HHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCccccccc-----------
Q 002784 235 TVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNE----------- 296 (881)
Q Consensus 235 ~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~----------- 296 (881)
+.+.|+++|++||+++||+|+|.||||+|.+++ |++|++ |.+.+.++||+.+.+.+.+
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGli----yrg~~~v~wcp~~~t~lad~e~~~~e~~~~ 156 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLI----VKGSHPVRYCPNDNNPVGDHDLLDGEEPEI 156 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCE----ecCCEeeeeCCCCCCCchHHHHhcCCCCCc
Confidence 999999999999999999999999999999986 888884 6666777888766543321
Q ss_pred -------c--cCCceEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEecc
Q 002784 297 -------F--LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASD 367 (881)
Q Consensus 297 -------~--~~~~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~ 367 (881)
| ..+.++++|||||||||||+||||||+.+|++++.+ ++.||+|++
T Consensus 157 ~~~~~ikf~~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~-------------------------~e~~i~a~~ 211 (897)
T PRK12300 157 VEYTLIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVD-------------------------GEKWIVSKE 211 (897)
T ss_pred ceEEEEEEeCCCceEEEEEECCcchhccceEEEECCCCcEEEEEEC-------------------------CEEEEEeHH
Confidence 1 124689999999999999999999999999999875 589999999
Q ss_pred chHHHHHHhCCceEEEEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhC------
Q 002784 368 LVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYG------ 441 (881)
Q Consensus 368 ~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~g------ 441 (881)
+++.+..+ ..+++++.+++|++|+|++|.||++++.+|| ++++||++++|||+||+|||||++||.+++++|
T Consensus 212 ~~~~~~~~-~~~~~~~~~~~G~~l~G~~~~~Pl~~~~ipi-l~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~ 289 (897)
T PRK12300 212 AAEKLSFQ-DRDVEIIEEIKGSELIGKKVKNPVTGKEVPI-LPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELL 289 (897)
T ss_pred HHHHHhcC-cCCceEEEEeehHHhcCCEEECCCCCCeEEE-eccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccc
Confidence 99988765 3468899999999999999999999999999 789999999999999999999999999999998
Q ss_pred --CCceecc-----------------------C---------------CCCccccccccCCCceeccchhHHHHHHHHhc
Q 002784 442 --LPILSPV-----------------------D---------------DEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQ 481 (881)
Q Consensus 442 --L~~~~~v-----------------------d---------------~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~ 481 (881)
|+++.++ | .+|+|++++|+|.|++| .+|++.|++.|+++
T Consensus 290 ~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v-~eA~~~I~~~L~~~ 368 (897)
T PRK12300 290 DVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPV-REAREKITKDLIEK 368 (897)
T ss_pred cccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEH-HHHHHHHHHHHHHC
Confidence 6643332 4 48999988899999999 59999999999999
Q ss_pred CCccceeccccccccccCCCCCeEEee-ccccccchh--hHHHHHHHhhccccccCCC----------------------
Q 002784 482 MSLIMEEPYEHKYPYDWRTKKPTIFRA-TEQWFASVE--GFRQAAMDAIGQVKWVPPQ---------------------- 536 (881)
Q Consensus 482 g~l~~~~~~~h~yp~~wRt~~Pii~r~-t~QWFi~~~--~lk~~al~~i~~v~~~P~~---------------------- 536 (881)
|.+++...+.| +|+||||++|||+++ ++|||++++ .||+.+++++++++|+|++
T Consensus 369 g~~~~~~~~~~-~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~ 447 (897)
T PRK12300 369 GIADIMYEFSN-RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRACARRRG 447 (897)
T ss_pred CCeEEEEecCC-CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHccCEEECHHHHHHHHHHHhhhhhcceeeccc
Confidence 99999888888 688899999999997 599999997 7999999999988888865
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 448 WGtpiP~~~~w~~esl~ds~iY~~~~~i~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~ 527 (897)
T PRK12300 448 LGTRLPWDEEWIIESLSDSTIYMAYYTIAHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLY 527 (897)
T ss_pred cCCcCCccCCEEeeeccccchhhhHHHHHHHHHHcCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhc
Confidence
Q ss_pred ---------------------------------------------------------------CCCCCCCchHhHHhhh-
Q 002784 537 ---------------------------------------------------------------EAPGYGADVLRLWVSS- 552 (881)
Q Consensus 537 ---------------------------------------------------------------~~~~yGaD~LRlwvas- 552 (881)
++++||||++|||+++
T Consensus 528 ~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~ 607 (897)
T PRK12300 528 WYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSS 607 (897)
T ss_pred cCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhC
Confidence 2359999999999986
Q ss_pred cCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHH
Q 002784 553 VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIF 632 (881)
Q Consensus 553 ~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~ 632 (881)
+++++|++|+++.++.+.+.++|++|+++++.++..+ ..+..+|+|+++++++++++++++|++|+|++|+
T Consensus 608 ~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~~---------~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~ 678 (897)
T PRK12300 608 AELLQDADWREKEVESVRRQLERFYELAKELIEIGGE---------EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAV 678 (897)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCc---------cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 5889999999999999999999999999997653211 1346789999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcc
Q 002784 633 QIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEF 712 (881)
Q Consensus 633 ~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~s 712 (881)
+.++.|++++ +|+|++.+|+ +++++|+++++.+++||+||+||+|||||+.|+. .+|
T Consensus 679 ~~i~~~l~~~-~n~Yi~~~k~-------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~---------~~s 735 (897)
T PRK12300 679 QEAFYELLND-LRWYLRRVGE-------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGG---------EGF 735 (897)
T ss_pred HHHHHHHHHH-HHHHHHhcch-------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC---------CCe
Confidence 9998788765 5899998776 4678899999999999999999999999999964 369
Q ss_pred eeecCCCCcchhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCcceEEEEEeCChHHHHHHHHhh
Q 002784 713 VFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMC 784 (881)
Q Consensus 713 V~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~R~~k~i~~sle~~v~I~~~~~~~~~~l~~l~ 784 (881)
|+++.||++++.+.+ ++++..++.++++.+.++++ |+...++ ..+|+|++++++..+.+..+.
T Consensus 736 v~~~~wP~~~~~~~d--~~~~~~~~~~~~~i~~ir~~----~~~~~~~---~~~~~i~~~~~~~~~~~~~~~ 798 (897)
T PRK12300 736 VSLEKWPEPDESKID--EEAELAEEYVKRLIEDIREI----LKVAKIK---PKKVYIYVAPDWKYEVLEIAA 798 (897)
T ss_pred EEeCCCCCCCcccCC--HHHHHHHHHHHHHHHHHHHH----HHHcCCC---CceEEEEECCHHHHHHHHHHH
Confidence 999999999887765 66777777777776666544 4333343 247888887776665554443
No 23
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=2.8e-90 Score=822.09 Aligned_cols=371 Identities=42% Similarity=0.797 Sum_probs=326.3
Q ss_pred HHHHHHHhCCCcccccc-CCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHH
Q 002784 129 EIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKV 207 (881)
Q Consensus 129 ~~~~~W~~~~~y~~~~~-~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a 207 (881)
+||++|+++++|+++.+ +.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||||||.++
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 69999999999999733 34578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccc---cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceecee
Q 002784 208 LQSLDED---AKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSI 277 (881)
Q Consensus 208 ~k~l~~~---~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~si 277 (881)
++.++.+ .+.++++++|++.|++|+.++++.|++||++||+++||+++|.||||.|++++ |++|+ +
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kgl----I 156 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGL----I 156 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTS----E
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCc----E
Confidence 9988643 34578999999999999999999999999999999999999999999999986 77888 4
Q ss_pred eeEeeecCCCCCcccccccc-----------------c---CCceEEEecCccccccccceeeeCCCCcEEEEEEccccc
Q 002784 278 YAVFRMVSAPPSTSGLLNEF-----------------L---PDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLE 337 (881)
Q Consensus 278 y~~f~~~~~~~~~~~~l~~~-----------------~---~~~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~ 337 (881)
|.+.+.+.||+.+.+.+.+. + .+++++||||||||||||+||+|||+.+|+ .
T Consensus 157 yr~~~pv~w~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~---~----- 228 (601)
T PF00133_consen 157 YRGKKPVNWCPSCQTALSDHEVEYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYV---I----- 228 (601)
T ss_dssp EEEEEEEEEETTTTEEE-GGGEEEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEE---E-----
T ss_pred EeeCCCCCcCcccccchhhhhcccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccce---e-----
Confidence 55666677777666544311 1 135999999999999999999999999999 2
Q ss_pred CCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecccccccCCEeecCCCCCCcceeecCcccccc
Q 002784 338 GDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTE 417 (881)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~ 417 (881)
+++.+|+|+++++++..+.+.. +.+++|++|.|++|.||++++.+|| |+++||+++
T Consensus 229 --------------------~~~~~i~~~~~~~~~~~~~~~~---~~~~~g~~L~g~~~~~P~~~~~~~v-i~~~~V~~~ 284 (601)
T PF00133_consen 229 --------------------NGERYIVAKDLVEKLSKQEKTK---LEDFRGKELVGLKYIHPLTGREVPV-IPDDFVDMD 284 (601)
T ss_dssp --------------------TTEEEEEEHHHHHHHHTTTSSS---EEEEECHHHTTSEEE-TTSSSSEEE-EEETTS-SS
T ss_pred --------------------CCeeehHHHHHHHHHHhhhhhc---ccccCcceecCcEeccccccceeEE-Ecccccccc
Confidence 2689999999999999886655 8899999999999999999999999 789999999
Q ss_pred CCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccCCCceeccchhHHHHHHHHhcCCccceeccccccccc
Q 002784 418 SGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYD 497 (881)
Q Consensus 418 ~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~ 497 (881)
+|||+||+|||||++||.++++|+|+++++||++|++++++++|.|++|+ +|++.|++.|+++|+++..+.+.|+||||
T Consensus 285 ~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~-~ar~~ii~~L~~~g~l~~~~~~~~~~p~c 363 (601)
T PF00133_consen 285 KGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMKVF-EAREKIIEDLKEKGLLLKIEEIEHSYPHC 363 (601)
T ss_dssp STTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSBHH-HHHHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred cchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCceee-eccHHHHHHHHHhhhhcccccccccccee
Confidence 99999999999999999999999999999999999999999999999995 89999999999999999999999999999
Q ss_pred cCCCCCeEEeeccccccchhhHHHHHHHhhccccccCCC
Q 002784 498 WRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 536 (881)
Q Consensus 498 wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~ 536 (881)
|||++|||+++++|||+++++|++++++++++|+|+|++
T Consensus 364 ~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~ 402 (601)
T PF00133_consen 364 WRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFYPES 402 (601)
T ss_dssp TTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEESSST
T ss_pred cCCCCEEEecccceeEEecHHhHHHHHhhcccceEEccc
Confidence 999999999999999999999999999999999999998
No 24
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=2e-88 Score=826.48 Aligned_cols=522 Identities=25% Similarity=0.391 Sum_probs=409.4
Q ss_pred CCCCCccccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcC
Q 002784 118 GMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWD 197 (881)
Q Consensus 118 ~~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD 197 (881)
.+++|+.++|++||++|+++++|++..+ .+++|++++|||||||.|||||++|++++|+++||+||+|++|+|+||||
T Consensus 2 ~~~y~~~~iE~~w~~~W~~~~~f~~~~~--~~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 79 (805)
T PRK00390 2 MERYNPKEIEKKWQKYWEENKTFKTTED--SSKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 79 (805)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCcc--CCCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccC
Confidence 5789999999999999999999998643 33479999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecC
Q 002784 198 CHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPE 270 (881)
Q Consensus 198 ~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~ 270 (881)
|||||||.+|++. +++| ++|++++++.|+++|++||+++||+++|+|+||+|++++ |++
T Consensus 80 ~~Glpie~~a~~~-------g~~~-------~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~ 145 (805)
T PRK00390 80 AFGLPAENAAIKT-------GTHP-------AEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEK 145 (805)
T ss_pred CCCCHHHHHHHHc-------CCCH-------HHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHC
Confidence 9999999998752 4566 789999999999999999999999999999999999985 788
Q ss_pred CceeceeeeEeeecCCCCCcccccc-------------------------------------------------------
Q 002784 271 GHVSRSIYAVFRMVSAPPSTSGLLN------------------------------------------------------- 295 (881)
Q Consensus 271 g~~s~siy~~f~~~~~~~~~~~~l~------------------------------------------------------- 295 (881)
|++++..+ .++||+.+.+.|.
T Consensus 146 Gliy~~~~----~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~ 221 (805)
T PRK00390 146 GLAYRKES----PVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRN 221 (805)
T ss_pred CCEEEecC----EEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHh
Confidence 88655443 3444433322110
Q ss_pred ----------cc-c--CCceEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEE
Q 002784 296 ----------EF-L--PDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFI 362 (881)
Q Consensus 296 ----------~~-~--~~~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (881)
.| + .+.+++||||||||||||+||||||+++|+.+..+. + .
T Consensus 222 wig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~-------------------------~-~ 275 (805)
T PRK00390 222 WIGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQ-------------------------N-P 275 (805)
T ss_pred hccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcc-------------------------h-H
Confidence 00 1 135799999999999999999999999998553210 0 0
Q ss_pred EEeccchHHHHHHhCC-ceEEEEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhC
Q 002784 363 IVASDLVPTLEAKWGT-KLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYG 441 (881)
Q Consensus 363 iva~~~~~~l~~~~~~-~~~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~g 441 (881)
. +.++++.+....+. ...++.+++|. |.|++|.||++++++|| +.++||++++|||+||+|||||++||+++++||
T Consensus 276 ~-~~~~~~~~~~~~~~~~~~~~~~~~g~-l~g~~~~~P~~~~~ipi-~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~ 352 (805)
T PRK00390 276 A-VAAFIEECKKKSDLERQTETKEKTGV-FTGLYAIHPLTGEKIPV-WIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYG 352 (805)
T ss_pred H-HHHHHHHHhhhcchhhhhcccceeee-ecCcEEECCCCCCeeeE-EEeccccCCCCCCeEEEcCCCCHHHHHHHHHcC
Confidence 0 22222222222111 12345678996 99999999999999999 569999999999999999999999999999999
Q ss_pred CCceeccCCCCc--------ccccc-----ccCCCceeccchhHHHHHHHHhcCCccceeccc--------ccc-----c
Q 002784 442 LPILSPVDDEGK--------FTEEA-----GKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYE--------HKY-----P 495 (881)
Q Consensus 442 L~~~~~vd~~G~--------~~~~~-----~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~--------h~y-----p 495 (881)
||++++||++|. |++++ +.|.|+.+ .+|++.|++.|++.|++.....|+ ++| |
T Consensus 353 L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~-~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIP 431 (805)
T PRK00390 353 LPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDS-EEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIP 431 (805)
T ss_pred CCceeeeCCCCcccccccccccCCeEEEeccccCCCCH-HHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCcee
Confidence 999999987662 44433 78999999 599999999999999876433332 223 2
Q ss_pred --cccCCCC-Ce---------------------------------------EEe---eccccccchhhHHHHH-------
Q 002784 496 --YDWRTKK-PT---------------------------------------IFR---ATEQWFASVEGFRQAA------- 523 (881)
Q Consensus 496 --~~wRt~~-Pi---------------------------------------i~r---~t~QWFi~~~~lk~~a------- 523 (881)
||-+|+. |+ ..| ..|+||.+.+.+..-.
T Consensus 432 i~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~ 511 (805)
T PRK00390 432 IIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEA 511 (805)
T ss_pred EEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccC
Confidence 2222221 00 001 1267777764321110
Q ss_pred ---HHhhccccccCCC----------------------------------------------------------CCCCCC
Q 002784 524 ---MDAIGQVKWVPPQ----------------------------------------------------------EAPGYG 542 (881)
Q Consensus 524 ---l~~i~~v~~~P~~----------------------------------------------------------~~~~yG 542 (881)
.+.. -+|+|.. ++++||
T Consensus 512 ~~~~~~~--~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~vKMSKS~GN~i~p~~~i~~yg 589 (805)
T PRK00390 512 PFDKEAA--NYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMVKMSKSKGNVVDPDDIIEKYG 589 (805)
T ss_pred cCChHHh--hCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcEEeCCCCCCCCCHHHHHHHcC
Confidence 0001 1344443 234899
Q ss_pred CchHhHHhhh-cCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHH
Q 002784 543 ADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRE 621 (881)
Q Consensus 543 aD~LRlwvas-~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~ 621 (881)
||++|||+++ +++.+|++|+++.++++.++++||||+++|.+++..+++. ++..+|+|++++|+++++++++
T Consensus 590 aD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~-------~~~~~D~~il~~l~~~i~~v~~ 662 (805)
T PRK00390 590 ADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALDV-------AALSEDKELRRKLHKTIKKVTE 662 (805)
T ss_pred hHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccCc-------ccChhhHHHHHHHHHHHHHHHH
Confidence 9999999986 5899999999999999999999999999997776644421 2346899999999999999999
Q ss_pred HHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCcc
Q 002784 622 SYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 701 (881)
Q Consensus 622 ~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~ 701 (881)
+|++|+|+.|++.+++|++ +|+.+| + ++++++|+++++.+++|||||+||+|||||+.|+.
T Consensus 663 ~~e~~~f~~ai~~l~~f~n-~lsk~~-~----------------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~- 723 (805)
T PRK00390 663 DIERLRFNTAIAALMELVN-ALYKAE-D----------------EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGH- 723 (805)
T ss_pred HHHcCCHHHHHHHHHHHHH-HHHHHH-H----------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC-
Confidence 9999999999999999995 587776 1 35678999999999999999999999999999964
Q ss_pred ccccCCCCCcceeecCCCCcchhc
Q 002784 702 YTLEDGSAAEFVFESKWPVLDEKW 725 (881)
Q Consensus 702 ~~~~~~~~~~sV~~~~wP~~~~~~ 725 (881)
.+||+.++||++++.+
T Consensus 724 --------~~sv~~~~wP~~~~~~ 739 (805)
T PRK00390 724 --------EGSIANAPWPTADEAA 739 (805)
T ss_pred --------CCeeEecCCCCCCHHH
Confidence 3689999999877643
No 25
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=1.2e-86 Score=812.17 Aligned_cols=514 Identities=23% Similarity=0.405 Sum_probs=405.7
Q ss_pred CCccccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCC
Q 002784 121 ANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHG 200 (881)
Q Consensus 121 ~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hG 200 (881)
||+.++|++||++|+++++|++..+ .++++|++++|||||||.|||||++|++++||++||+||+||+|+|+|||||||
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~-~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~G 79 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDD-SNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFG 79 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCC-CCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCC
Confidence 5778999999999999999998643 466889999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCce
Q 002784 201 LPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHV 273 (881)
Q Consensus 201 LPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~ 273 (881)
||||.+|++ .+++| ++|+.++++.|+++|++||+++||+++|+|+||+|++++ |++|++
T Consensus 80 lpie~~a~~-------~g~~p-------~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGli 145 (842)
T TIGR00396 80 LPAENAAIK-------RGIHP-------AKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLA 145 (842)
T ss_pred hHHHHHHHH-------cCCCH-------HHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCe
Confidence 999999974 35677 689999999999999999999999999999999999975 888886
Q ss_pred eceeeeEeeecCCCCCccccccc---------------------------------------------------------
Q 002784 274 SRSIYAVFRMVSAPPSTSGLLNE--------------------------------------------------------- 296 (881)
Q Consensus 274 s~siy~~f~~~~~~~~~~~~l~~--------------------------------------------------------- 296 (881)
++.. ..++||+.+.+.|.+
T Consensus 146 y~~~----~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wi 221 (842)
T TIGR00396 146 YVKE----ADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWI 221 (842)
T ss_pred Eeec----cceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcc
Confidence 5443 444444433321110
Q ss_pred ---------c-cC--CceEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEE
Q 002784 297 ---------F-LP--DLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIV 364 (881)
Q Consensus 297 ---------~-~~--~~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 364 (881)
| +. +.+++||||||||||||++|+|||+++|+.+...
T Consensus 222 g~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~------------------------------- 270 (842)
T TIGR00396 222 GKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAE------------------------------- 270 (842)
T ss_pred cccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhc-------------------------------
Confidence 0 11 3479999999999999999999999999754211
Q ss_pred eccchHHHHHHhC----CceEEEEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHh
Q 002784 365 ASDLVPTLEAKWG----TKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKY 440 (881)
Q Consensus 365 a~~~~~~l~~~~~----~~~~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~ 440 (881)
..+.++.+.+... .+..++...+|..|.|++|.||++++.+|| +.++||++++|||+||+|||||++||+++++|
T Consensus 271 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi-~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~ 349 (842)
T TIGR00396 271 NNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPI-WVANYVLASYGTGAVMGVPAHDERDFEFAQKY 349 (842)
T ss_pred chHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCCCCEeEE-EEeCcccCCCCCCeEEEcCCCCHHHHHHHHHh
Confidence 1112333333321 122334466777899999999999999999 56999999999999999999999999999999
Q ss_pred CCCceeccCC------------CCccccccccCCCceeccchhHHHHHHHHhcCCccceeccc--------cccccccCC
Q 002784 441 GLPILSPVDD------------EGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYE--------HKYPYDWRT 500 (881)
Q Consensus 441 gL~~~~~vd~------------~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~--------h~yp~~wRt 500 (881)
|||++++||+ +|.+++ .+.|.|+.+ .+|++.|++.|+++|.+.+...|. ++| |.+
T Consensus 350 ~L~i~~vi~~~~~~~~~~~~~~~G~~~~-~~~~~Gl~~-~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRy---WG~ 424 (842)
T TIGR00396 350 KLPIKVVIDPAGKNLKTQAFTEDGVLVN-SGEFNGLNS-SEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRY---WGE 424 (842)
T ss_pred CCCcceeeCCcccccccccccCCceEec-chhcCCCCH-HHHHHHHHHHHHHcCCCCceEEeecccceeecccc---cCC
Confidence 9999999984 566664 478999999 599999999999999876655442 222 333
Q ss_pred CCCeEE---------------------------------------------------ee---ccccccchhhHHHHH---
Q 002784 501 KKPTIF---------------------------------------------------RA---TEQWFASVEGFRQAA--- 523 (881)
Q Consensus 501 ~~Pii~---------------------------------------------------r~---t~QWFi~~~~lk~~a--- 523 (881)
.-|++| |- .|+||.+.+.+-.-.
T Consensus 425 PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~ 504 (842)
T TIGR00396 425 PIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPK 504 (842)
T ss_pred ceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCC
Confidence 333322 22 267877664321000
Q ss_pred -------HHhhccccccCCC---------------------------------------------C--------------
Q 002784 524 -------MDAIGQVKWVPPQ---------------------------------------------E-------------- 537 (881)
Q Consensus 524 -------l~~i~~v~~~P~~---------------------------------------------~-------------- 537 (881)
.+..+ .|+|.. .
T Consensus 505 ~~~~~~~~~~~~--~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~ 582 (842)
T TIGR00396 505 NTDQPFDKEKAE--YWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDEL 582 (842)
T ss_pred CcCCCcChHHHh--ccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhh
Confidence 00011 244433 1
Q ss_pred ------------------------------------CCCCCCchHhHHhhh-cCCCCceecChhHHHHHHHHHHHHhhHH
Q 002784 538 ------------------------------------APGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTL 580 (881)
Q Consensus 538 ------------------------------------~~~yGaD~LRlwvas-~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~ 580 (881)
+++||||++|||+++ +.+.+|++|+++.++++.++++||||++
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~ 662 (842)
T TIGR00396 583 TERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLF 662 (842)
T ss_pred hccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 127999999999984 5788999999999999999999999999
Q ss_pred HHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHhhHHHHHHhhccccCCC
Q 002784 581 RYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQ-FFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 659 (881)
Q Consensus 581 rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~-f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~ 659 (881)
+++++++.++. .++...+..+|+|+++++++++++++++|++|+ |+.|++.+++|++ +|++ |. +
T Consensus 663 ~~~~~~~~~~~---~~~~~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n-~L~~-~~---~------- 727 (842)
T TIGR00396 663 YNILGELDGKT---YLTPTILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLN-ALYK-AK---K------- 727 (842)
T ss_pred HHHHhhhcccc---cCCcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHh-hh---h-------
Confidence 99988876542 122234567999999999999999999999999 9999999999985 4664 11 0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchh
Q 002784 660 TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEK 724 (881)
Q Consensus 660 ~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~ 724 (881)
..+|+++++.+++|||||+||+|||||+.|+.. .+||+.++||++++.
T Consensus 728 ---------~~~l~~~l~~ll~lLaPf~PhiaEElW~~l~~~--------~~sv~~~~wP~~d~~ 775 (842)
T TIGR00396 728 ---------DALYLEYLKGFLTVLSPFAPHLAEELWEKLGSE--------PFIIKQAKWPKVDET 775 (842)
T ss_pred ---------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCC--------CCeeecCCCCCCCHH
Confidence 026899999999999999999999999999642 248999999987654
No 26
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.2e-84 Score=792.82 Aligned_cols=528 Identities=22% Similarity=0.341 Sum_probs=395.5
Q ss_pred CCCCCCCCccccchHHHHHHHhCCCcccccc-CCCCCceEEecCCCCCCCc-ccchHHHHHHHHHHHHHHHHhCCCeeee
Q 002784 115 TTFGMRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGN-LHMGHALNKILKDIINRYKLLQNYKVRY 192 (881)
Q Consensus 115 t~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~-~~~~~~f~i~dgPPYaNG~-lHiGHaln~ilkDii~Ry~rm~G~~V~~ 192 (881)
..++..||+.++|++||++|+++++|+.... +.++++|++++|||||||. |||||++|++++|+++||+||+||+|+|
T Consensus 74 ~~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~ 153 (963)
T PLN02563 74 PAAKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLH 153 (963)
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecc
Confidence 3467779999999999999999999987542 3457889999999999997 9999999999999999999999999999
Q ss_pred ccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-----
Q 002784 193 VPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ----- 267 (881)
Q Consensus 193 ~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q----- 267 (881)
+|||||||||||.+|.+ .+.+| ++|+.++++.|++||++||+++||+++|+|+||+|++++
T Consensus 154 ~~G~D~~GlPiE~~a~~-------~g~~p-------~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~ 219 (963)
T PLN02563 154 PMGWDAFGLPAEQYAIE-------TGTHP-------KITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFL 219 (963)
T ss_pred cccccccCcHHHHHHHH-------cCCCh-------HHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHH
Confidence 99999999999998864 23455 779999999999999999999999999999999999985
Q ss_pred --ecCCceeceeeeEeeecCCCCCccccccc-------------------------------------------------
Q 002784 268 --YPEGHVSRSIYAVFRMVSAPPSTSGLLNE------------------------------------------------- 296 (881)
Q Consensus 268 --Y~~g~~s~siy~~f~~~~~~~~~~~~l~~------------------------------------------------- 296 (881)
|++|++ |.+...++||+.+.+.|..
T Consensus 220 ~L~~~Gli----Y~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~ 295 (963)
T PLN02563 220 QLLKRGLA----YQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKE 295 (963)
T ss_pred HHHHCCCE----EeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHH
Confidence 888985 5555556666554432200
Q ss_pred ---------------c-c-C------CceEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCc
Q 002784 297 ---------------F-L-P------DLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNV 353 (881)
Q Consensus 297 ---------------~-~-~------~~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~ 353 (881)
| + . +.+++|||||||||+||++|+|||++.|+.+..... +
T Consensus 296 ~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~----------~------- 358 (963)
T PLN02563 296 MQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAE----------Q------- 358 (963)
T ss_pred HHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhccc----------c-------
Confidence 1 0 1 357999999999999999999999999984322100 0
Q ss_pred ccCCCceEEEEeccchHHHHHHhCCceEEEEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhH
Q 002784 354 LKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQED 433 (881)
Q Consensus 354 ~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~D 433 (881)
...-+.|+.+..+.+.+... .....++..|.|+++.||++++.+||| .++||++++|||+||+|||||++|
T Consensus 359 --~~~v~~y~~~~~~~~~~~~~------~~~~~k~g~~~g~~~~~P~~~~~iPI~-~ad~V~~~~GTGaVm~~PaHd~~D 429 (963)
T PLN02563 359 --KEAVEEYVDAASRKSDLERT------ELQKEKTGVFTGSYAINPATGEAIPIW-VADYVLGSYGTGAIMAVPAHDTRD 429 (963)
T ss_pred --hHHHHHHHHHHhchhHHhhh------hccceecccccCcEEeccCCCCeeEEE-EecccCCCCCCCeEEEcCCCCHHH
Confidence 00001122222222222111 112345667999999999999999995 599999999999999999999999
Q ss_pred HHHHHHhCCCceeccC---CC-----Ccccccc-----cc----CCCceeccchhHHHHHHHHhcCCccceeccc-----
Q 002784 434 YVTSLKYGLPILSPVD---DE-----GKFTEEA-----GK----FSGLDVLGDGNVAVVKYLDEQMSLIMEEPYE----- 491 (881)
Q Consensus 434 y~~~~k~gL~~~~~vd---~~-----G~~~~~~-----~~----~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~----- 491 (881)
|+++++||||++++|+ ++ |.|++++ +. |.|+.+ ++|++.|++.|++.|.+....+|.
T Consensus 430 ~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~~-~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ 508 (963)
T PLN02563 430 FEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGLSS-KEAAKKVIEWLEETGNGKKKVNYKLRDWL 508 (963)
T ss_pred HHHHHHcCCCceeeeccCccccccccccccCceeEecCCCcccccCCcCH-HHHHHHHHHHHHhCCCCCCeeEecCCCce
Confidence 9999999999999994 22 5565442 33 999999 699999999999999886655552
Q ss_pred ---cccccccCCCCCeEE------------------------------------------------------ee---ccc
Q 002784 492 ---HKYPYDWRTKKPTIF------------------------------------------------------RA---TEQ 511 (881)
Q Consensus 492 ---h~yp~~wRt~~Pii~------------------------------------------------------r~---t~Q 511 (881)
++| |.+.-|+++ |- .|+
T Consensus 509 ISRQRy---WG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDt 585 (963)
T PLN02563 509 FARQRY---WGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQ 585 (963)
T ss_pred Eeeecc---cCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCc
Confidence 333 444333332 11 155
Q ss_pred cccchhhHHH--------HHHHhhccccccCCC--------------------------------------------C--
Q 002784 512 WFASVEGFRQ--------AAMDAIGQVKWVPPQ--------------------------------------------E-- 537 (881)
Q Consensus 512 WFi~~~~lk~--------~al~~i~~v~~~P~~--------------------------------------------~-- 537 (881)
||.+.+.+-. ...+.-..-.|+|.. .
T Consensus 586 w~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~ 665 (963)
T PLN02563 586 WAGSCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGE 665 (963)
T ss_pred hhhccHHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeecC
Confidence 6655442211 000000001355555 1
Q ss_pred ------------------------------------------------------------------------CCCCCCch
Q 002784 538 ------------------------------------------------------------------------APGYGADV 545 (881)
Q Consensus 538 ------------------------------------------------------------------------~~~yGaD~ 545 (881)
+++||||+
T Consensus 666 ~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADa 745 (963)
T PLN02563 666 VEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADS 745 (963)
T ss_pred ccccceecCCCcCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHH
Confidence 12899999
Q ss_pred HhHHhhhcCC-CCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHh
Q 002784 546 LRLWVSSVDY-TGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYE 624 (881)
Q Consensus 546 LRlwvas~~~-~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye 624 (881)
||||++++++ .+|..|+.+.+..+.++++|+||++.....+...+.+. .++ .....|+|+++++++++++++++|+
T Consensus 746 LRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~~~~~~~~-~~~--~~~~~d~~ll~kl~~~ikkVte~~e 822 (963)
T PLN02563 746 LRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGSFRDG-TVV--TDEEPSLEQLRLLHKCIAKVTEEIE 822 (963)
T ss_pred HHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhcccccCcc-ccc--cCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999987655 56788999999999999999998876542211122211 111 1235799999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccc
Q 002784 625 SYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTL 704 (881)
Q Consensus 625 ~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~ 704 (881)
+|+|++|++++++|++. +++++ .+++++++.+++|||||+||+|||||+.|+.
T Consensus 823 ~y~FntAi~~lmef~n~-l~~~~----------------------~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~---- 875 (963)
T PLN02563 823 STRFNTAISAMMEFTNA-AYKWD----------------------KVPREAIEPFVLLLSPYAPHLAEELWFRLGH---- 875 (963)
T ss_pred cCCHHHHHHHHHHHHHH-HhCch----------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCC----
Confidence 99999999999999864 53210 1356899999999999999999999999974
Q ss_pred cCCCCCcceeecCCCCcchhc
Q 002784 705 EDGSAAEFVFESKWPVLDEKW 725 (881)
Q Consensus 705 ~~~~~~~sV~~~~wP~~~~~~ 725 (881)
.+||+.++||++++.+
T Consensus 876 -----~~sv~~~~WP~~d~~~ 891 (963)
T PLN02563 876 -----SNSLAYEPWPEANPSY 891 (963)
T ss_pred -----CCeeeeCCCCCCCHHH
Confidence 2589999999987654
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-68 Score=631.26 Aligned_cols=545 Identities=26% Similarity=0.384 Sum_probs=393.1
Q ss_pred CCCCccccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCC
Q 002784 119 MRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDC 198 (881)
Q Consensus 119 ~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~ 198 (881)
+++++.++|++||++|+++++|+...+.+..+|||+++|+|||||.|||||++||++.||++||+||+||||+||||||+
T Consensus 3 ~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwda 82 (814)
T COG0495 3 SRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDA 82 (814)
T ss_pred cccchHHHHHHHHHHHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccc
Confidence 45777899999999999999999864432226999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCC
Q 002784 199 HGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEG 271 (881)
Q Consensus 199 hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g 271 (881)
+|||||..|++. +.+| +.|++++|+.+++||++||+++||+|+|.|+||+|++++ |++|
T Consensus 83 fGlPae~~A~~~-------~~~P-------~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekG 148 (814)
T COG0495 83 FGLPAENAAIKI-------GTDP-------AKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKG 148 (814)
T ss_pred cCchHHHHHHHh-------CCCh-------HHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCC
Confidence 999999999853 4578 899999999999999999999999999999999999974 8899
Q ss_pred ceeceeeeEeeecCCCCCcccccccc-----------------------c--CC-------ceEEEecCcccccccccee
Q 002784 272 HVSRSIYAVFRMVSAPPSTSGLLNEF-----------------------L--PD-------LGLAVWTTTPWTVPANAAV 319 (881)
Q Consensus 272 ~~s~siy~~f~~~~~~~~~~~~l~~~-----------------------~--~~-------~~l~iwTTtPwTl~an~av 319 (881)
++ |.+-..++||+.+.+.+..- + .+ ......|.+|+|+.+-|..
T Consensus 149 L~----y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~n 224 (814)
T COG0495 149 LA----YRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRN 224 (814)
T ss_pred CE----EeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHc
Confidence 85 55555677877666543210 0 00 1234456699999999999
Q ss_pred eeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCC--CceEEEEecc--chHHHHHH-------------hCCc-eE
Q 002784 320 AVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQ--KKVFIIVASD--LVPTLEAK-------------WGTK-LV 381 (881)
Q Consensus 320 ~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iva~~--~~~~l~~~-------------~~~~-~~ 381 (881)
||+|+..|.+.......+. .... ..+ ..++++ +..++.+|.+ ++..+... .+.. .+
T Consensus 225 WIg~s~g~~v~f~~~~~~~-~~~~----~vf-ttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~ 298 (814)
T COG0495 225 WIGPSEGYEVAFVVDGEEE-IVSI----EVF-TTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVE 298 (814)
T ss_pred CcCCCCCeEEEEecCCccc-ceee----eee-eccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCcee
Confidence 9999999998765210000 0000 000 011111 2233344433 22222111 1111 11
Q ss_pred -E--EEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCC------
Q 002784 382 -I--KKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEG------ 452 (881)
Q Consensus 382 -i--~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G------ 452 (881)
+ ..+.+|- ..|.++.||+++..+|||+ ++||.+..|||+||.+|+|+..||+++++|++|+..+|...|
T Consensus 299 ~~~~~~~k~gv-~~g~~a~~p~~~e~iPi~~-a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~ 376 (814)
T COG0495 299 SVPAHAEKDGV-FLGGYAINPVNGEKIPVWI-ANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKV 376 (814)
T ss_pred eeeccCCCcce-eccccccCCCCCCcCCEEE-eCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccce
Confidence 1 1235565 4468899999999999976 899999999999999999999999999999999988875432
Q ss_pred -----ccccccccCCCceeccchhHHHHHHHHhcCCccceecccc--------------------------ccccccC--
Q 002784 453 -----KFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEH--------------------------KYPYDWR-- 499 (881)
Q Consensus 453 -----~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h--------------------------~yp~~wR-- 499 (881)
.+. +.+.+.|+.. +++...+...|.+.|.....-+|.- ..|.+|-
T Consensus 377 ~~~~g~li-nS~~~~gl~~-e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv 454 (814)
T COG0495 377 YEGEGVLI-NSGGLDGLDY-EEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPV 454 (814)
T ss_pred eccCceEe-ccccccCcch-hHHHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCc
Confidence 321 2358899988 4677788888887665544444421 1222221
Q ss_pred --------CCC--Ce---------------EEeec---cccccchhhH--------H---HHHHHhhccccccCCC----
Q 002784 500 --------TKK--PT---------------IFRAT---EQWFASVEGF--------R---QAAMDAIGQVKWVPPQ---- 536 (881)
Q Consensus 500 --------t~~--Pi---------------i~r~t---~QWFi~~~~l--------k---~~al~~i~~v~~~P~~---- 536 (881)
.++ |+ ++|+| +||.-+.+.. . ..+.+.. -.|+|-.
T Consensus 455 ~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~--~yW~PVD~yig 532 (814)
T COG0495 455 KLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEF--NYWYPVDLYIG 532 (814)
T ss_pred ccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHH--hcccChheeec
Confidence 011 21 45555 6776665421 1 0111111 3588866
Q ss_pred ------------------------------------------------------------CCCCCCCchHhHHhhhc-CC
Q 002784 537 ------------------------------------------------------------EAPGYGADVLRLWVSSV-DY 555 (881)
Q Consensus 537 ------------------------------------------------------------~~~~yGaD~LRlwvas~-~~ 555 (881)
++++||||++|+|++++ +.
T Consensus 533 G~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~ 612 (814)
T COG0495 533 GIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPP 612 (814)
T ss_pred chhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCCh
Confidence 23599999999998865 66
Q ss_pred CCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhc-cChHHHHHH
Q 002784 556 TGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYES-YQFFKIFQI 634 (881)
Q Consensus 556 ~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~-y~f~~a~~~ 634 (881)
.+|..|+++.+..+.++++++|+++.-..+.+... . ..+....|+|+++++ ++.+++.++. +.|+.|+..
T Consensus 613 ~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~-----~-~~~~~~~~~~~~h~~---~~~v~~~~e~~~~~nt~i~~ 683 (814)
T COG0495 613 EQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE-----L-TKEQGKEDRWLLHRT---IKKVTEDFEARQTFNTAIAA 683 (814)
T ss_pred hhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc-----c-cchhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999987665433110 0 001115788877655 5566666666 999999999
Q ss_pred HHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCccee
Q 002784 635 IQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVF 714 (881)
Q Consensus 635 i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~ 714 (881)
+|.|++. | .+|...... .+ .+|.++++.+++||+||+||+|||+|+.|++. ++|+
T Consensus 684 ~m~l~N~-l-~~~~~~~~~----------~~----~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~---------~~v~ 738 (814)
T COG0495 684 LMELLNA-L-RKYLRRTEG----------DR----KVLREALETWVRLLAPFAPHIAEELWEELGNE---------GFVS 738 (814)
T ss_pred HHHHHHH-H-HHHHhcccc----------hH----HHHHHHHHHHHHHhcccccHHHHHHHHHhcCC---------Ccee
Confidence 9999854 4 567765432 11 57899999999999999999999999999753 4899
Q ss_pred ecCCCCcchhcCC
Q 002784 715 ESKWPVLDEKWRT 727 (881)
Q Consensus 715 ~~~wP~~~~~~~~ 727 (881)
.++||++++...+
T Consensus 739 ~~~wP~~de~~l~ 751 (814)
T COG0495 739 NAPWPEPDEEALV 751 (814)
T ss_pred eCCCCCCChhhcc
Confidence 9999999887544
No 28
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-60 Score=527.19 Aligned_cols=509 Identities=22% Similarity=0.360 Sum_probs=374.9
Q ss_pred ccchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHH
Q 002784 125 VREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIE 204 (881)
Q Consensus 125 ~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE 204 (881)
.+|+.|+++|.+...+.... +.+++| ||++++|||+|.|||||.+-||+.|+++||+||+||+|.+|||||.+|||.|
T Consensus 34 ~iEk~W~~~~~~~~~~~~~~-d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAE 111 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKDS-DKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAE 111 (876)
T ss_pred HHHHHHHHHHhcCCcccccc-ccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchh
Confidence 78999999999876665432 345666 6668999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhc-e------ecCCceecee
Q 002784 205 LKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAA-Q------YPEGHVSRSI 277 (881)
Q Consensus 205 ~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~-q------Y~~g~~s~si 277 (881)
.+|. .++++| +.|+.++|+.|++|+++||+++||+|+..|++|+|+++ | |++|+ .
T Consensus 112 NAAi-------ergv~P-------~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GL----A 173 (876)
T KOG0435|consen 112 NAAI-------ERGVHP-------ASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGL----A 173 (876)
T ss_pred hHHH-------hcCCCc-------hhhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhh----h
Confidence 9998 367889 88999999999999999999999999999999999996 5 78888 4
Q ss_pred eeEeeecCCCCCcccccc-----------------------------------------c--------------------
Q 002784 278 YAVFRMVSAPPSTSGLLN-----------------------------------------E-------------------- 296 (881)
Q Consensus 278 y~~f~~~~~~~~~~~~l~-----------------------------------------~-------------------- 296 (881)
|.+-..+||++...+.|. .
T Consensus 174 Yq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G 253 (876)
T KOG0435|consen 174 YQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDG 253 (876)
T ss_pred hccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccc
Confidence 555566777765443220 0
Q ss_pred ----c--c----CCceEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEec
Q 002784 297 ----F--L----PDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVAS 366 (881)
Q Consensus 297 ----~--~----~~~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~ 366 (881)
| + .+..+.+|||+|+||++.+.+++.|++.-+....
T Consensus 254 ~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~---------------------------------- 299 (876)
T KOG0435|consen 254 AELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDS---------------------------------- 299 (876)
T ss_pred eEEEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhc----------------------------------
Confidence 0 1 2367889999999999999888888875321110
Q ss_pred cchHHHHHHhCCceEEEEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCcee
Q 002784 367 DLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILS 446 (881)
Q Consensus 367 ~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~ 446 (881)
++.+.+... . +.. +|- +.++++.||++++.+|||+ ++||..-.|||+|+.+|+|+.+|++++++-|+..+.
T Consensus 300 ~lkefl~~~-~-----l~~-Kg~-~lp~~A~Np~tg~~iPv~~-a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~ 370 (876)
T KOG0435|consen 300 SLKEFLSKS-D-----LPQ-KGV-QLPCQAKNPVTGRAIPVVV-ADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWII 370 (876)
T ss_pred hHHHhhhhh-h-----ccc-cCc-ccceeeccCCCCceeeEEE-echhccCCCcceeeeccCcccchhHHHhcccceeEE
Confidence 111111100 0 001 343 4468999999999999965 899999999999999999999999999996665433
Q ss_pred c----cCCCCccccccccCCCceeccchhHHHHHHHHhcCCccceecc--------ccccccccCCCCCeEE--------
Q 002784 447 P----VDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPY--------EHKYPYDWRTKKPTIF-------- 506 (881)
Q Consensus 447 ~----vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~--------~h~yp~~wRt~~Pii~-------- 506 (881)
. .++.|+-+.. ..+.|+.+.++|...|+++++..|..-....| +++| |.|..|+|.
T Consensus 371 ~~~~~f~~~~K~~~~-~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRy---WGTPIPivhc~~cG~vp 446 (876)
T KOG0435|consen 371 CIEVIFTNFGKKNEQ-KAFTNLDIRQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRY---WGTPIPIVHCDDCGAVP 446 (876)
T ss_pred EEeeeecchhhhhcc-ccccchhHHHHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhc---cCCCcceEEcCCCCccc
Confidence 2 3455555432 35677655457888999999998877766666 3566 777777654
Q ss_pred ------------------------------------------ee---ccccccchhhH--------HHHHHHhhcccccc
Q 002784 507 ------------------------------------------RA---TEQWFASVEGF--------RQAAMDAIGQVKWV 533 (881)
Q Consensus 507 ------------------------------------------r~---t~QWFi~~~~l--------k~~al~~i~~v~~~ 533 (881)
|. .|+|+.+.++. .+...+.-..-+|+
T Consensus 447 Vpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~M 526 (876)
T KOG0435|consen 447 VPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNM 526 (876)
T ss_pred CcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccceeeEeecCCCCcccccchhhhhccC
Confidence 22 26777666521 11112221223566
Q ss_pred CCC-----------------------------------------------------------------------------
Q 002784 534 PPQ----------------------------------------------------------------------------- 536 (881)
Q Consensus 534 P~~----------------------------------------------------------------------------- 536 (881)
|..
T Consensus 527 PVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~ 606 (876)
T KOG0435|consen 527 PVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKN 606 (876)
T ss_pred ceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecC
Confidence 655
Q ss_pred ------------------------CCCCCCCchHhHHhh-hcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCC
Q 002784 537 ------------------------EAPGYGADVLRLWVS-SVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWR 591 (881)
Q Consensus 537 ------------------------~~~~yGaD~LRlwva-s~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~ 591 (881)
.+.+||+|++|+++. ++.+.++++|++..+.++.+.+.|+|++..-++..-++-.
T Consensus 607 ~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~ 686 (876)
T KOG0435|consen 607 DKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGK 686 (876)
T ss_pred CCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 123999999999976 5677889999999999999999999999866655322222
Q ss_pred CCCccCC-CCCCHhHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHH
Q 002784 592 VGNSISY-DDLPMIDQYALFQLENIVKNIRESYES-YQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQ 669 (881)
Q Consensus 592 ~~~~~~~-~~l~~~Dr~il~~l~~li~~v~~~ye~-y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q 669 (881)
+.+.... +.....++-+.+..|.+++.|+++|+. +.++.|++.++.|.+. |...|-.... .+
T Consensus 687 ~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~-l~~a~k~~~~--------h~------- 750 (876)
T KOG0435|consen 687 AKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNA-LKKALKIVLV--------HS------- 750 (876)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhh--------cC-------
Confidence 2121111 223456778999999999999999995 6699999999999854 6543322210 01
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcce-eecCCCCcchhc
Q 002784 670 TVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFV-FESKWPVLDEKW 725 (881)
Q Consensus 670 ~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV-~~~~wP~~~~~~ 725 (881)
.....+|+.+++||+|++||+|+|+|+.|+.. .+. ....||+.++.+
T Consensus 751 ~~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~---------~~~~~~~~WP~vd~~~ 798 (876)
T KOG0435|consen 751 PEFERALEALVIMLAPFAPHVASELWSALAND---------LSWVSDVKWPEVDPDY 798 (876)
T ss_pred hHHHHHHHHHHHHHhccCchhHHHHHHHHhcc---------ccchhccCCccCChhh
Confidence 12456788999999999999999999999743 122 122699988764
No 29
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-57 Score=510.37 Aligned_cols=608 Identities=20% Similarity=0.297 Sum_probs=428.0
Q ss_pred CCCCccccchHHHHHHHhCCCcccccc---CCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccC
Q 002784 119 MRANALVREPEIHKLWDDHQVFLRVAD---KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (881)
Q Consensus 119 ~r~n~~~~E~~~~~~W~~~~~y~~~~~---~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pG 195 (881)
.|..+.++|+++|++|+++++|+.+.. +.++++|+.+.|+||+||.||+||+++-.-.|+..-|+||+|++|+||+|
T Consensus 10 r~d~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfg 89 (1080)
T KOG0437|consen 10 RRDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFG 89 (1080)
T ss_pred HHHHHHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecc
Confidence 345678999999999999999998752 34678999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHhc------ccc-----------------------------------------------cccCCChH
Q 002784 196 WDCHGLPIELKVLQSL------DED-----------------------------------------------AKKDLTPS 222 (881)
Q Consensus 196 wD~hGLPiE~~a~k~l------~~~-----------------------------------------------~~~~~~p~ 222 (881)
|+|+|+||-.-|.|.- |.. ..-+++.+
T Consensus 90 FHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~de 169 (1080)
T KOG0437|consen 90 FHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDE 169 (1080)
T ss_pred cccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHH
Confidence 9999999987655421 100 00012222
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHhccccccCCCccCCc--cchhhce---e----cCCceece-eeeEeeecCCCCC-
Q 002784 223 KLRAK--AAKFAKATVKAQMASFKRYGVWADWNNPYLTLD--PEYEAAQ---Y----PEGHVSRS-IYAVFRMVSAPPS- 289 (881)
Q Consensus 223 ~~~~~--~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~d--p~y~~~q---Y----~~g~~s~s-iy~~f~~~~~~~~- 289 (881)
++.+. +..|...+--...+++++||..+||+|.|.|+| |.|.+++ + .-|+|.-+ -|.-|...+..++
T Consensus 170 EI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCm 249 (1080)
T KOG0437|consen 170 EIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCM 249 (1080)
T ss_pred HhhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCccc
Confidence 22211 344555555566789999999999999999998 7777764 2 22343321 1222222211111
Q ss_pred cc-------------------------cccccc-cCCceEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCc
Q 002784 290 TS-------------------------GLLNEF-LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAP 343 (881)
Q Consensus 290 ~~-------------------------~~l~~~-~~~~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~ 343 (881)
.+ ..|... ..+++++++|.||+|++|.++++|+|+.+|..++...
T Consensus 250 DHDR~sGEgV~PqeytliKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~--------- 320 (1080)
T KOG0437|consen 250 DHDRASGEGVGPQEYTLIKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACN--------- 320 (1080)
T ss_pred ccccccCCCCCcceEEEEEEEecccchhhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecC---------
Confidence 00 001111 1247999999999999999999999999999998752
Q ss_pred ccCCCCCCCcccCCCceEEEEeccchHHHHHHhCC-----ceEEEEecccccccCCEeecCCCCC-CcceeecCcccccc
Q 002784 344 ANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGT-----KLVIKKTLAGSDLENCRYVHPVDNR-QCPVVIGGDYITTE 417 (881)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~-----~~~i~~~~~G~~L~g~~~~~Pl~~~-~~pi~i~~~~V~~~ 417 (881)
...+.|+++++.+.+..++. .+..+.++.|.+|+|..+..|+.-. .+.+ +|...|..+
T Consensus 321 ---------------~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~-LPMlTi~~~ 384 (1080)
T KOG0437|consen 321 ---------------ETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYA-LPMLTILAT 384 (1080)
T ss_pred ---------------CceEEEeehHHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeee-ccceeeecc
Confidence 23456677777766665543 3556779999999999999999854 4555 889999999
Q ss_pred CCCCceecCCCCChhHHHHHHH-------hCC----------Cceecc-----------C--------C-----------
Q 002784 418 SGTGLVHTAPGHGQEDYVTSLK-------YGL----------PILSPV-----------D--------D----------- 450 (881)
Q Consensus 418 ~GTG~Vh~aPaHg~~Dy~~~~k-------~gL----------~~~~~v-----------d--------~----------- 450 (881)
+|||+|.++|+..||||...++ ||| ||+.+- + +
T Consensus 385 KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~ 464 (1080)
T KOG0437|consen 385 KGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLA 464 (1080)
T ss_pred CCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHH
Confidence 9999999999999999998853 344 332220 0 0
Q ss_pred --CCccccc--cccCCCceeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchh--hHHHHHH
Q 002784 451 --EGKFTEE--AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVE--GFRQAAM 524 (881)
Q Consensus 451 --~G~~~~~--~~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~--~lk~~al 524 (881)
.|.++.. .|.|.|.+| .++.+.|-..|.+.|..+.... ..-++-.||+..||+-++||||+++- .||+.+.
T Consensus 465 y~e~fy~g~mlig~y~G~KV-e~~K~~i~~~li~~g~a~~y~E--PEkqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~ 541 (1080)
T KOG0437|consen 465 YLEGFYEGTMLIGKYKGEKV-EDAKPKIKTDLIETGDALKYNE--PEKQVMSRSGDECIVALCDQWYLDYGEAEWKKQAK 541 (1080)
T ss_pred HHHhhhcceEEEeccccccH-HhhhhHHHHHHHhcccceeecC--cchhhhccCCCceEEEeccchhhhcCcHHHHHHHH
Confidence 1222221 378999999 6899999999999998775422 22356799999999999999999984 6999999
Q ss_pred Hhhcccc---------------ccCCC-----------------------------------------------------
Q 002784 525 DAIGQVK---------------WVPPQ----------------------------------------------------- 536 (881)
Q Consensus 525 ~~i~~v~---------------~~P~~----------------------------------------------------- 536 (881)
+++++++ |+-+|
T Consensus 542 ~cLe~l~~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~d~~g~~~~plgi 621 (1080)
T KOG0437|consen 542 ECLENLNTFSDETRNGFEDTLDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGI 621 (1080)
T ss_pred HHHhhhhccCHHHHHHHHHHHHHHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHHhhccCCcccCCC
Confidence 9888764 33333
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 622 ~~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraN 701 (1080)
T KOG0437|consen 622 KPDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRAN 701 (1080)
T ss_pred ChhhcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCccceeeC
Confidence
Q ss_pred ----------------------CCCCCCCchHhHHhhhc-CCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCC
Q 002784 537 ----------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG 593 (881)
Q Consensus 537 ----------------------~~~~yGaD~LRlwvas~-~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~ 593 (881)
.+++||||+.|+-+|.+ |..+|.+|.+.. +...+.+|++...|+...+.+.+.
T Consensus 702 GHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~---AnAaILRLyt~~ew~eEm~~~~s~- 777 (1080)
T KOG0437|consen 702 GHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEAN---ANAAILRLYTYVEWIEEMCENRSS- 777 (1080)
T ss_pred ceEEecchhhccccCCeeeHHHHHHHhCccceeeeeecccCCcccchhHHhc---ccHHHHHHHHHHHHHHHHHhhHHh-
Confidence 34699999999999865 666899998753 345677888888887665544321
Q ss_pred CccCCC-CCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHH-HHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHH
Q 002784 594 NSISYD-DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQII-QRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTV 671 (881)
Q Consensus 594 ~~~~~~-~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i-~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~v 671 (881)
+..+ .....||.+.+.+|.+++..+++|+...|++|++.- ++|. ...++|-+..- . -....+
T Consensus 778 --LrtGp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~q--aArD~Yrel~g------~------~mh~dL 841 (1080)
T KOG0437|consen 778 --LRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQ--AARDMYRELCG------E------GMHRDL 841 (1080)
T ss_pred --hccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHH--HHHHHHHHHhc------c------cccHHH
Confidence 1111 123789999999999999999999999999999864 4444 35778877642 1 123456
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChhhHHHHHHHHHHHHHHHHHHH
Q 002784 672 LSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLE 751 (881)
Q Consensus 672 L~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le 751 (881)
+...+++.+.||+||+||+||.||+.+.+. ..||. .+||..++.-.-.-.......+.+..+|.+....+-
T Consensus 842 v~r~ietqtlLLaPi~Ph~aeyiw~~~~~~--------~~~v~-~~wP~~s~~~e~~~~~~~yl~~~l~r~~~~l~~~~~ 912 (1080)
T KOG0437|consen 842 VFRFIETQTLLLAPICPHLAEYIWRTVLKK--------NFSVN-VGWPFVSPPDEKLGSSALYLKRTLKRLRAELEKQML 912 (1080)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhccC--------Cceee-cCCCCCCCHHHHhhhhHHHHHHHHHHHHHHHHhhhc
Confidence 888999999999999999999999988754 23554 499987653100000112344555555555443322
Q ss_pred HH-hhcCcCC-CCcceEEEEEeCC---hHHHHHHHHh
Q 002784 752 VA-RTGKLIG-SSLEAKVYLFTDD---ASLASRLREM 783 (881)
Q Consensus 752 ~~-R~~k~i~-~sle~~v~I~~~~---~~~~~~l~~l 783 (881)
.. ++.|..- .+.+.+.+|+++. +|....|..+
T Consensus 913 ~kkkk~K~~~~~~~p~~~ti~Vae~fp~Wq~~cl~il 949 (1080)
T KOG0437|consen 913 KKKKKKKGAEVPSKPLKLTIYVAEEFPEWQAQCLSIL 949 (1080)
T ss_pred hhhcccCCCCCCCCcceEEEEEeccCCHHHHHHHHHH
Confidence 22 2222211 3456677788754 3554444444
No 30
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.9e-48 Score=458.05 Aligned_cols=374 Identities=22% Similarity=0.316 Sum_probs=280.9
Q ss_pred CceEEecCCCCCCCcccchHHHHH-HHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHH
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNK-ILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~-ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~ 228 (881)
++|+|++|||||||.|||||++++ +++|+++||+||+|++|.|++||||||+||+.+|.+ .+++|
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~-------~g~~~------- 68 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK-------EGVTP------- 68 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHH-------cCCCH-------
Confidence 479999999999999999999998 999999999999999999999999999999999984 35666
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCcccccccccCCc
Q 002784 229 AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDL 301 (881)
Q Consensus 229 ~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~ 301 (881)
+++|+++.+.++++|++||+. |+.+++|+||+|.+.+ |++|++++..+..+.+.. +.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~l~i~--~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~----~~~~l------- 135 (556)
T PRK12268 69 QELADKYHEEHKEDFKKLGIS--YDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPS----DGRFL------- 135 (556)
T ss_pred HHHHHHHHHHHHHHHHHcCCc--CCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCC----CCcCc-------
Confidence 789999999999999999995 5568999999999875 788887766655543322 11000
Q ss_pred eEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceE
Q 002784 302 GLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLV 381 (881)
Q Consensus 302 ~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~ 381 (881)
T Consensus 136 -------------------------------------------------------------------------------- 135 (556)
T PRK12268 136 -------------------------------------------------------------------------------- 135 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccC
Q 002784 382 IKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKF 461 (881)
Q Consensus 382 i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~ 461 (881)
++.||. | .||.++. .+.+|...+.+|
T Consensus 136 ----------------------------~~~~v~---g-----~cp~c~~----------------~~~~G~~ce~cg-- 161 (556)
T PRK12268 136 ----------------------------PDRYVE---G-----TCPYCGY----------------EGARGDQCDNCG-- 161 (556)
T ss_pred ----------------------------Ccccee---c-----cCCCCCC----------------cccCCchhhhcc--
Confidence 001111 1 1222221 112233322222
Q ss_pred CCceeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhccccccCCC-----
Q 002784 462 SGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ----- 536 (881)
Q Consensus 462 ~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~----- 536 (881)
... +.. ...-|+||||+.|+++|+++|||++++++++.+++.++++.|+|+.
T Consensus 162 --~~~--~~~-------------------~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~ 218 (556)
T PRK12268 162 --ALL--DPT-------------------DLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFT 218 (556)
T ss_pred --ccC--ChH-------------------HhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 111 111 1123899999999999999999999999999999999877776665
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 219 ~~~l~~~l~Dw~ISR~~~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~ 298 (556)
T PRK12268 219 LNWLKEGLKPRAITRDLDWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNI 298 (556)
T ss_pred HHHHhCCCCCcCceeeCCCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccC
Confidence
Q ss_pred -------------------------------------------------CCCCCCCchHhHHhhhc-CCCCceecChhHH
Q 002784 537 -------------------------------------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVL 566 (881)
Q Consensus 537 -------------------------------------------------~~~~yGaD~LRlwvas~-~~~~D~~~s~~~l 566 (881)
++++||+|++|||+++. +..+|++|+++.+
T Consensus 299 ~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~ 378 (556)
T PRK12268 299 PFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEF 378 (556)
T ss_pred cchHHHHHHHHHhcCCCCCCCCEeeccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 22489999999998865 5678999999987
Q ss_pred HH--HHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhh
Q 002784 567 RQ--MSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLS 644 (881)
Q Consensus 567 ~~--~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls 644 (881)
.. ..+++++++|.+.++...+.+... ..++...+...|+|++++++++++.++++|++|+|+.|++.+++|+ +++
T Consensus 379 ~~~~~~~~~~~l~n~~~r~~~~~~~~~~-~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~--~~~ 455 (556)
T PRK12268 379 VRRVNSELADKYGNLVNRVLSFIEKYFG-GIVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELA--REA 455 (556)
T ss_pred HHHHhHHhhhhHHHHHHHHHHHHHHhcC-CcCCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHH
Confidence 54 457788999986554432221000 1122234567899999999999999999999999999999999998 489
Q ss_pred HHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCCCc
Q 002784 645 NFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVL 721 (881)
Q Consensus 645 ~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~ 721 (881)
|+|++..|++.+.+ .+....+.+..++.++++.+++||+|||||+|||||+.|+. +++..+.||..
T Consensus 456 n~yi~~~kpw~~~~-~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~----------~~~~~~~w~~~ 521 (556)
T PRK12268 456 NKYLDEKAPWKLAK-TDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG----------ENIEKLTWESL 521 (556)
T ss_pred HHHHHcCCChhhhc-CCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC----------CCCcccchhhh
Confidence 99999999976554 23333344555666889999999999999999999999963 23556678753
No 31
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=5.9e-46 Score=438.56 Aligned_cols=360 Identities=26% Similarity=0.334 Sum_probs=279.3
Q ss_pred eEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHH
Q 002784 152 FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKF 231 (881)
Q Consensus 152 f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~ 231 (881)
|+|++|||||||.|||||+++++++|+++||+||+|++|.|++|||+||+||+.+|++ .+++| +++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~-------~g~~~-------~e~ 66 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ-------EGLTP-------KEL 66 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHH-------cCCCH-------HHH
Confidence 6899999999999999999999999999999999999999999999999999999974 35667 678
Q ss_pred HHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCcccccccccCCceEE
Q 002784 232 AKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLA 304 (881)
Q Consensus 232 a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~~l~ 304 (881)
++++.+.+++++++||+..| .+++|+++.|...+ +++|+++...+..+..+. +.
T Consensus 67 ~~~~~~~~~~~l~~LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~----~~------------- 127 (530)
T TIGR00398 67 VDKYHEEFKDDWKWLNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPE----CE------------- 127 (530)
T ss_pred HHHHHHHHHHHHHHhCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCC----CC-------------
Confidence 89999999999999999766 57889999888754 667776544433322111 00
Q ss_pred EecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEE
Q 002784 305 VWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKK 384 (881)
Q Consensus 305 iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~ 384 (881)
| +
T Consensus 128 -------~-------------------------------------------------~---------------------- 129 (530)
T TIGR00398 128 -------M-------------------------------------------------F---------------------- 129 (530)
T ss_pred -------c-------------------------------------------------C----------------------
Confidence 0 0
Q ss_pred ecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccCCCc
Q 002784 385 TLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGL 464 (881)
Q Consensus 385 ~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~G~ 464 (881)
+++.||. | .+|.+|.+| ..|...+.+| .
T Consensus 130 ------------------------l~~~~v~---g-----~cp~c~~~~----------------~~g~~ce~cg----~ 157 (530)
T TIGR00398 130 ------------------------LPDRYVE---G-----TCPKCGSED----------------ARGDHCEVCG----R 157 (530)
T ss_pred ------------------------Cchhhhc---C-----CCCCCCCcc----------------cccchhhhcc----c
Confidence 0011111 1 245554432 2232222221 1
Q ss_pred eeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhcc---ccccCCC-----
Q 002784 465 DVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ---VKWVPPQ----- 536 (881)
Q Consensus 465 ~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~---v~~~P~~----- 536 (881)
..++..+..|+||||++|++++.++|||++++.+++.+++.+++ ..+.|+.
T Consensus 158 ---------------------~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 216 (530)
T TIGR00398 158 ---------------------HLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKA 216 (530)
T ss_pred ---------------------cCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHH
Confidence 12444567899999999999999999999999999999888863 3333333
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 217 ~~~l~~~l~d~~iSR~~~~WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h 296 (530)
T TIGR00398 217 QNWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFH 296 (530)
T ss_pred HHHHhCCCCCccccCcCCCCCeeCCCCCCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhH
Confidence
Q ss_pred --------------------------------------------CCCCCCCchHhHHhhhc-CCCCceecChhHHHHH--
Q 002784 537 --------------------------------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQM-- 569 (881)
Q Consensus 537 --------------------------------------------~~~~yGaD~LRlwvas~-~~~~D~~~s~~~l~~~-- 569 (881)
++++||+|++|||+++. +..+|++|+++.++..
T Consensus 297 ~~~~~a~l~~~~~~~~~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n 376 (530)
T TIGR00398 297 TIYWPAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVN 376 (530)
T ss_pred HHHHHHHHHhCCCCCCCEEEeeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHH
Confidence 23589999999999875 5788999999998765
Q ss_pred HHHHHHHhhHHHHHHhcccCCCCCCccCC-CCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHH
Q 002784 570 SDIYRKLRGTLRYLLGNLHDWRVGNSISY-DDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYF 648 (881)
Q Consensus 570 ~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~-~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl 648 (881)
.+.+++++|+++++++.+.+... ..++. ......|+|++++++++++.++++|++|+|+.|++.+++|+ +++|+|+
T Consensus 377 ~~l~~~l~n~~~r~~~~~~~~~~-~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~n~Yi 453 (530)
T TIGR00398 377 ADLANKLGNLLNRTLGFIKKYFN-GVLPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA--DRGNKYI 453 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CcCCCCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHH
Confidence 67889999999877665543111 11221 22457899999999999999999999999999999999998 5899999
Q ss_pred HHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCc
Q 002784 649 DVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 700 (881)
Q Consensus 649 ~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~ 700 (881)
+.+|++.+.+ ++.+++++++++.++++.++++|+|||||+|||||+.|+.
T Consensus 454 ~~~kpw~~~~--~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 503 (530)
T TIGR00398 454 DENKPWELFK--QSPRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNF 503 (530)
T ss_pred hcCCChhhcC--ChHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 9999987764 3346778999999999999999999999999999999974
No 32
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=4.3e-45 Score=430.10 Aligned_cols=486 Identities=16% Similarity=0.197 Sum_probs=313.4
Q ss_pred cCCCCCCCCCCCccccchHHHHHHHhCCCcccccc----CCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhC
Q 002784 111 DLPKTTFGMRANALVREPEIHKLWDDHQVFLRVAD----KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186 (881)
Q Consensus 111 ~lp~t~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~----~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~ 186 (881)
++-|..|+.+..++..|.-- =.++.+|..... ...+++|+|++|||||||.||||||++++++|+++||+||+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~ 105 (616)
T PLN02224 29 SFCRNCFRFSKKLPYYSQFS---SGKRALYCTSSSQESTVDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLL 105 (616)
T ss_pred hhhhccccccccccchhhcc---cccceeeccCCCcccCCCCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhc
Confidence 66666666554433222111 023456633222 12357899999999999999999999999999999999999
Q ss_pred CCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhc
Q 002784 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAA 266 (881)
Q Consensus 187 G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~ 266 (881)
|++|.|++|||+||+||+.+|.+ .+.+| .++|+++.+.++++|++||| +|+++++|++|.|.+.
T Consensus 106 G~~V~fv~G~DehG~kI~~~A~~-------~g~~p-------~e~~~~~~~~~~~~~~~l~I--~~D~f~rTt~~~h~~~ 169 (616)
T PLN02224 106 GKKVIFITGTDEHGEKIATSAAA-------NGRNP-------PEHCDIISQSYRTLWKDLDI--AYDKFIRTTDPKHEAI 169 (616)
T ss_pred CCceEEecCcCCcchHHHHHHHH-------cCCCh-------HHHHHHHHHHHHHHHHHcCC--CCCcCeeCCCHHHHHH
Confidence 99999999999999999998864 34566 56777778889999999999 6679999999999987
Q ss_pred e-------ecCCceeceeeeEeeecCCCCCcccccccccCCceEEEecCccccccccceeeeCCCCcEEEEEEcccccCC
Q 002784 267 Q-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGD 339 (881)
Q Consensus 267 q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~ 339 (881)
+ |++|++++..|..+.+......+.+ .+...+... | +.+.. +..-.+..|.
T Consensus 170 vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~--~~l~~~~~~------~--~~~~~-~~~~~e~~~f----------- 227 (616)
T PLN02224 170 VKEFYARVFANGDIYRADYEGLYCVNCEEYKDE--KELLENNCC------P--VHQMP-CVARKEDNYF----------- 227 (616)
T ss_pred HHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCH--HHHcCCCCC------C--CCCCc-ceEEecceEE-----------
Confidence 5 8999998888877766543211110 000000000 0 00111 1111111222
Q ss_pred CCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCce----------EEEEecccccccCCEeecCCCCCCcceee
Q 002784 340 SAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKL----------VIKKTLAGSDLENCRYVHPVDNRQCPVVI 409 (881)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~----------~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i 409 (881)
+=-++..+.|.+.+.... ++..-++ ..|....+..+.....+||
T Consensus 228 -----------------------f~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~-~gL~d~~ISR~~~~WGIpv-- 281 (616)
T PLN02224 228 -----------------------FALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIK-SGLRDFSISRALVDWGIPV-- 281 (616)
T ss_pred -----------------------EEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHh-cCCCCccccCCCCCCceEC--
Confidence 111222222222211000 0011111 2366677777655556664
Q ss_pred cCc-----cccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccCCCceeccchhHHHHHHHHhcCCc
Q 002784 410 GGD-----YITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSL 484 (881)
Q Consensus 410 ~~~-----~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l 484 (881)
|.+ ||+.|.-.|.+..+-.... +.+.. .....+....-.+.|+++..-.......+|...|+.
T Consensus 282 P~~~~~viYVWfDAl~~Yls~~~~~~~-------~~~~~-----~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~~ 349 (616)
T PLN02224 282 PDDDKQTIYVWFDALLGYISALTEDNK-------QQNLE-----TAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLE 349 (616)
T ss_pred CCCCCcEEEEehhhHHHHHHHhccccc-------ccccc-----hhhccCCCcceEEEeecccccHHHHHHHHHHHCCCC
Confidence 332 6777666666554311100 00000 000001111235778887543223334778777877
Q ss_pred cceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhccccccCCCCCCCCCCchHhHHhhhc-CCCCceecCh
Q 002784 485 IMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYTGDVMIGP 563 (881)
Q Consensus 485 ~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~~~~~yGaD~LRlwvas~-~~~~D~~~s~ 563 (881)
.+...+.|.| |-.+-.+|+++..+.+. |...+++||+|++|||+++. .+.+|.+|++
T Consensus 350 ~P~~i~~~g~-----------------l~~eG~KMSKS~GN~i~-----p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~ 407 (616)
T PLN02224 350 LPKMVFGHGF-----------------LTKDGMKMGKSLGNTLE-----PFELVQKFGPDAVRYFFLREVEFGNDGDYSE 407 (616)
T ss_pred CCcEEEeccc-----------------EecCCccccccCCccCC-----HHHHHHHcCcHHHHHHHHhcCCCcCCCCCCH
Confidence 7766666665 33344456655444433 44466789999999998864 6678999999
Q ss_pred hHHH--HHHHHHHHHhhHHHHHHhcccCCCCCCccCCC-CCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 002784 564 QVLR--QMSDIYRKLRGTLRYLLGNLHDWRVGNSISYD-DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFII 640 (881)
Q Consensus 564 ~~l~--~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~-~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~ 640 (881)
+.+. ..++++++++|++.++++.+..+.. ..++.. .....|+|++++++++++++.++|++|+|++|++.+++|+
T Consensus 408 ~~~~~~~NseLan~lgNll~R~l~~~~k~~~-~~~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~- 485 (616)
T PLN02224 408 DRFIKIVNAHLANTIGNLLNRTLGLLKKNCE-STLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIG- 485 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcCCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-
Confidence 9764 3577999999999776665443221 122221 2345689999999999999999999999999999999997
Q ss_pred HHhhHHHHHHhhccccCCCC--ChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCc
Q 002784 641 VDLSNFYFDVAKDRLYTGGT--TSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 700 (881)
Q Consensus 641 ~~ls~~Yl~~~KdrLy~~~~--~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~ 700 (881)
+.+|+|++..+||-..... +..+..++..++.++++.+++||+|||||+||+||+.|+.
T Consensus 486 -~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~ 546 (616)
T PLN02224 486 -NAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546 (616)
T ss_pred -HHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 5799999999997432222 2223355677899999999999999999999999999974
No 33
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=3.7e-44 Score=433.61 Aligned_cols=463 Identities=14% Similarity=0.162 Sum_probs=300.9
Q ss_pred CCCceEEecCCCCCCCcccchHHHH-HHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHH
Q 002784 148 DGENFVLHDGPPYANGNLHMGHALN-KILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRA 226 (881)
Q Consensus 148 ~~~~f~i~dgPPYaNG~lHiGHaln-~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~ 226 (881)
+.++|+|++|||||||.|||||+++ ++.+||++||+||+|++|+|++|||+||+|||.+|++ .+.+|
T Consensus 15 ~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~-------~g~~p----- 82 (801)
T PLN02610 15 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE-------ENCTP----- 82 (801)
T ss_pred CCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH-------cCCCH-----
Confidence 4568999999999999999999997 5669999999999999999999999999999999984 45677
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCcccccccccC
Q 002784 227 KAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLP 299 (881)
Q Consensus 227 ~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~ 299 (881)
++|++++.+.++++|++|||++ +++++|++|+|.+.+ |++|+|++..|..+.+...... +.
T Consensus 83 --~e~~d~~~~~~~~~~~~l~i~~--D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~f--------l~ 150 (801)
T PLN02610 83 --KEICDKYHAIHKEVYDWFDISF--DKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKF--------LA 150 (801)
T ss_pred --HHHHHHHHHHHHHHHHHcCCcc--ccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCC--------cc
Confidence 8899999999999999999955 589999999999875 8899999999988876553221 11
Q ss_pred CceEEEecCccc------cccccc--eee--eCCCCcEEEEEEcccccCCCCCcccCCC-CCCCc--ccCCCceEEEEec
Q 002784 300 DLGLAVWTTTPW------TVPANA--AVA--VNAKLQYAVVEIQSLLEGDSAAPANKKS-RPGNV--LKDQKKVFIIVAS 366 (881)
Q Consensus 300 ~~~l~iwTTtPw------Tl~an~--av~--v~p~~~Y~~v~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~iva~ 366 (881)
+-++ -.|-|. .-.|++ ++. .+|.. ++ +.+. .-|.. ..+ ....|+--+
T Consensus 151 d~~v--~G~CP~~~C~~~~a~Gd~Ce~Cg~~~~p~e---Li--------------~p~c~~~g~~~~~~~-~~~~ff~Ls 210 (801)
T PLN02610 151 DRLV--EGTCPTEGCNYDSARGDQCEKCGKLLNPTE---LI--------------DPKCKVCKNTPRIRD-TDHLFLELP 210 (801)
T ss_pred hHHh--cCcCCccccCccccccchhhhccccCChhh---hc--------------CCcccCCCCcceEEE-cceEEEEhH
Confidence 1111 011122 000100 000 00000 00 0000 00000 000 011222222
Q ss_pred cchHHHHHHhCCc-e---------EEEEecccccccCCEeecCCCCCCcceeecC--c---cccccCCCCceecCCCCCh
Q 002784 367 DLVPTLEAKWGTK-L---------VIKKTLAGSDLENCRYVHPVDNRQCPVVIGG--D---YITTESGTGLVHTAPGHGQ 431 (881)
Q Consensus 367 ~~~~~l~~~~~~~-~---------~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~--~---~V~~~~GTG~Vh~aPaHg~ 431 (881)
...+.|.+.+... . .++..+-...|....+..++ ...+||=+.+ + ||+.|.=.|.+..+-+.+.
T Consensus 211 ~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~-~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~ 289 (801)
T PLN02610 211 LLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDL-KWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTP 289 (801)
T ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeec-CCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhh
Confidence 3333333322110 0 00001111234455454442 2334430110 1 6666655555544323221
Q ss_pred hHHHHHHHhCCCceeccCCCCccccc-----cccCCCceeccchhHHHHHHHHhcCCc--cceeccccccccccCCCCCe
Q 002784 432 EDYVTSLKYGLPILSPVDDEGKFTEE-----AGKFSGLDVLGDGNVAVVKYLDEQMSL--IMEEPYEHKYPYDWRTKKPT 504 (881)
Q Consensus 432 ~Dy~~~~k~gL~~~~~vd~~G~~~~~-----~~~~~G~~v~~~a~~~ii~~L~~~g~l--~~~~~~~h~yp~~wRt~~Pi 504 (881)
+|. + |..+ .-+|-|+++..-..-..-.+|.+.|.- ++...+.|.|
T Consensus 290 -~~~---~--------------~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~---------- 341 (801)
T PLN02610 290 -EWE---K--------------WWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEY---------- 341 (801)
T ss_pred -HHH---H--------------hcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCcCCCCEEEeccC----------
Confidence 221 1 1111 126788887644434445899988864 5666677776
Q ss_pred EEeeccccccchhhHHHHHHHhhccccccCCCCCCC-CCCchHhHHhhh-cCCCCceecChhHHHH--HHHHHHHHhhHH
Q 002784 505 IFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPG-YGADVLRLWVSS-VDYTGDVMIGPQVLRQ--MSDIYRKLRGTL 580 (881)
Q Consensus 505 i~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~~~~~-yGaD~LRlwvas-~~~~~D~~~s~~~l~~--~~~~~~Kl~Nt~ 580 (881)
|-.+-.+|+++.-+.|. |...++. ||+|++|||+++ ..+++|.+|+++.+.. .++++++|+|++
T Consensus 342 -------l~~eG~KMSKS~GNvV~-----p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv 409 (801)
T PLN02610 342 -------LNYEGGKFSKSKGVGVF-----GNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFI 409 (801)
T ss_pred -------EecCCceecCcCCcccC-----HHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 55555566665544433 4445564 999999999875 5778899999988854 477899999988
Q ss_pred HHHHhcccC-----CCCCCccCC---CCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhh
Q 002784 581 RYLLGNLHD-----WRVGNSISY---DDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAK 652 (881)
Q Consensus 581 rf~l~nl~~-----f~~~~~~~~---~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~K 652 (881)
..+++.+.. |+. .+|. .+...+|+|++++++++++++.++|++|+|++|++.|++|. +++|+||+..|
T Consensus 410 ~R~~~~i~~~~~k~~~g--~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~--~~~NkYIe~~k 485 (801)
T PLN02610 410 NRVLSFIAKPPGAGYGS--VIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQ 485 (801)
T ss_pred HHHHHHHHhhhhhccCC--cCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcC
Confidence 776665541 322 2221 12456899999999999999999999999999999999985 57999999999
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCc
Q 002784 653 DRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 700 (881)
Q Consensus 653 drLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~ 700 (881)
||-.... +..+...+.+++.++++.+++||+||||++||+||+.|+.
T Consensus 486 PW~L~k~-d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~ 532 (801)
T PLN02610 486 FWKLYKE-DKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNL 532 (801)
T ss_pred chhhhCC-CHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 9432222 3333445666777899999999999999999999999974
No 34
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.2e-43 Score=422.32 Aligned_cols=442 Identities=20% Similarity=0.281 Sum_probs=297.6
Q ss_pred CceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHH
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAA 229 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~ 229 (881)
++|+|++|+|||||.+||||++++++.|+++||+||+|++|.|++|||+||+||+.+|.+ .+++| +
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~-------~g~~~-------~ 69 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK-------AGKTP-------Q 69 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHH-------cCCCH-------H
Confidence 579999999999999999999999999999999999999999999999999999998873 45677 6
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCcccccccccCCce
Q 002784 230 KFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLG 302 (881)
Q Consensus 230 ~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~~ 302 (881)
++++++.+.++++|++|||++| .+++|+|+.|.+.+ +++|+++...|.++.+...... +.+.+
T Consensus 70 e~~d~~~~~fk~~l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~--------l~~~~ 139 (648)
T PRK12267 70 EYVDEISAGFKELWKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETF--------FTESQ 139 (648)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCcc--------CChHH
Confidence 7899999999999999999766 68999999887763 7899998888888765442211 11111
Q ss_pred EEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceE-
Q 002784 303 LAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLV- 381 (881)
Q Consensus 303 l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~- 381 (881)
++--.+-|. -|.. +-+-+.. ..|+-.++..+.+.+.......
T Consensus 140 l~~~~~c~~--cg~~-~e~~~~~----------------------------------~~f~~l~~~~~~l~~~~~~~~~~ 182 (648)
T PRK12267 140 LVDGGKCPD--CGRE-VELVKEE----------------------------------SYFFRMSKYQDRLLEYYEENPDF 182 (648)
T ss_pred hccCCcCCC--CCCc-CeEEecc----------------------------------eEEEEcHHHHHHHHHHHhhCCcc
Confidence 110000000 0111 1111111 1222222333333322211000
Q ss_pred E---------E-EecccccccCCEeecCCCCCCcceeecCc-----cccccCCCCceecCCCC---ChhHHHHHHHhCCC
Q 002784 382 I---------K-KTLAGSDLENCRYVHPVDNRQCPVVIGGD-----YITTESGTGLVHTAPGH---GQEDYVTSLKYGLP 443 (881)
Q Consensus 382 i---------~-~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~-----~V~~~~GTG~Vh~aPaH---g~~Dy~~~~k~gL~ 443 (881)
+ . .-+. ..|....+..+-....+|| |.+ ||+.|.+.|.+... +. +.++|. +
T Consensus 183 ~~p~~~~~~~~~~~l~-~~l~D~~ISR~~~~WGipv--P~~~~~v~yVWfDA~~~y~s~~-~~~~~~~~~~~---~---- 251 (648)
T PRK12267 183 IQPESRKNEMINNFIK-PGLEDLSISRTSFDWGIPV--PFDPKHVVYVWIDALLNYITAL-GYGSDDDELFK---K---- 251 (648)
T ss_pred cCCHHHHHHHHHHHhh-CCCCCcccCCCCCCcceEC--CCCCCCEEEEcccchHHHHHHc-CCCCCCchHHH---h----
Confidence 0 0 0111 1244555555422233332 222 77888877765433 11 111221 1
Q ss_pred ceeccCCCCccccccccCCCceeccchhHHHH--HHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHH
Q 002784 444 ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVV--KYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQ 521 (881)
Q Consensus 444 ~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii--~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~ 521 (881)
+....-.+.|+++.. ...+. ..|...|...+...+.|.| |-++-.+|++
T Consensus 252 ----------~wp~~~~~~GkDii~--fH~i~wpa~l~~~~~~~p~~v~~hg~-----------------l~~eg~KMSK 302 (648)
T PRK12267 252 ----------FWPADVHLVGKDILR--FHAIYWPIMLMALGLPLPKKVFAHGW-----------------WLMKDGKMSK 302 (648)
T ss_pred ----------hcccceEEEeeeecc--hhHHHHHHHHHhCCCCCCcEEEecce-----------------EEECCceecc
Confidence 111112467777742 33333 6777777666666666665 4444455655
Q ss_pred HHHHhhccccccCCCCCCCCCCchHhHHhhh-cCCCCceecChhHHHH--HHHHHHHHhhHHHHHHhcccCCCCCCccC-
Q 002784 522 AAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQ--MSDIYRKLRGTLRYLLGNLHDWRVGNSIS- 597 (881)
Q Consensus 522 ~al~~i~~v~~~P~~~~~~yGaD~LRlwvas-~~~~~D~~~s~~~l~~--~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~- 597 (881)
+..+.+. |...+++||+|+||||+++ ...++|.+|+++.+.. .+++.++|+|++.++++.+..+.. ..++
T Consensus 303 S~GN~i~-----p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~-~~~p~ 376 (648)
T PRK12267 303 SKGNVVD-----PEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFD-GEIPA 376 (648)
T ss_pred cCCcccC-----HHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-CcCCC
Confidence 5444433 4446679999999999985 5788999999998854 477889999998777665554221 1222
Q ss_pred CCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCC-CChHHHHHHHHHHHHHH
Q 002784 598 YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG-TTSFTRRSCQTVLSAHL 676 (881)
Q Consensus 598 ~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~-~~~~~r~s~q~vL~~il 676 (881)
...+...|+|++++++++++++.++|++|+|++|++.+++|+. ++|+|++..||+..... .+..+.+++.+++.+++
T Consensus 377 ~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~--~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l 454 (648)
T PRK12267 377 PGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLIS--RANKYIDETAPWVLAKDEGKKERLATVMYHLAESL 454 (648)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHH
Confidence 2345678999999999999999999999999999999999984 69999999999543322 12233455777888999
Q ss_pred HHHHHHhhcccchhHHHHHHhCCc
Q 002784 677 LSIVRVIAPILPHLAEDVWQNLPF 700 (881)
Q Consensus 677 ~~l~~lLaPilP~~aEEiw~~L~~ 700 (881)
+.++++|+|||||+||+||+.|+.
T Consensus 455 ~~~~~lL~P~~P~~ae~i~~~Lg~ 478 (648)
T PRK12267 455 RKVAVLLSPFMPETSKKIFEQLGL 478 (648)
T ss_pred HHHHHHHhCccchHHHHHHHHcCC
Confidence 999999999999999999999974
No 35
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.9e-42 Score=414.51 Aligned_cols=467 Identities=20% Similarity=0.222 Sum_probs=298.3
Q ss_pred CceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHH
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAA 229 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~ 229 (881)
++|+|++|||||||.|||||+++++++|+++||+||+|++|.|++|||+||+||+.+|++ .+++| .
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~-------~g~~p-------~ 67 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK-------EGITP-------E 67 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH-------cCCCH-------H
Confidence 469999999999999999999999999999999999999999999999999999999984 35677 6
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCcccccccccCCce
Q 002784 230 KFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLG 302 (881)
Q Consensus 230 ~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~~ 302 (881)
++++++.+.++++|++||++.| .+++|++|+|.+.+ |++|+++...|..+..+.... ++.+.+
T Consensus 68 e~~~~~~~~~~~~~~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~--------~l~~~~ 137 (673)
T PRK00133 68 ELIARYHAEHKRDFAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGM--------FLPDRF 137 (673)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCC--------Cccchh
Confidence 7899999999999999999766 58999999998875 889999888887776554322 222222
Q ss_pred EEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCc---ccCCC-CCCCcccC-CCceEEEEeccchHHHHHHhC
Q 002784 303 LAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAP---ANKKS-RPGNVLKD-QKKVFIIVASDLVPTLEAKWG 377 (881)
Q Consensus 303 l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~-~~~~~~iva~~~~~~l~~~~~ 377 (881)
+ . .|.|. +.+. +.+.+.+- .++..... .+... .-|....- .....|+--++..+.|.+.+.
T Consensus 138 v-~-g~cp~----C~~~--d~~g~~ce------~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~ 203 (673)
T PRK00133 138 V-K-GTCPK----CGAE--DQYGDNCE------VCGATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWIT 203 (673)
T ss_pred e-e-cccCC----CCCc--ccCCchhh------hccccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHh
Confidence 2 1 12221 1111 00000000 00000000 00000 00110000 011223323333344443321
Q ss_pred CceEE--------EEecccccccCCEeecCCCCC-CcceeecCc-----cccccCCCCceecCCCC----ChhHHHHHHH
Q 002784 378 TKLVI--------KKTLAGSDLENCRYVHPVDNR-QCPVVIGGD-----YITTESGTGLVHTAPGH----GQEDYVTSLK 439 (881)
Q Consensus 378 ~~~~i--------~~~~~G~~L~g~~~~~Pl~~~-~~pi~i~~~-----~V~~~~GTG~Vh~aPaH----g~~Dy~~~~k 439 (881)
....+ ..-+. ..|....+..++ +. .+|| |++ ||+.|.=.|.+..+-++ +.++|.-+-.
T Consensus 204 ~~~~~~~~~~~~~~~~l~-~~l~d~~ISR~~-~W~Gipv--P~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~ 279 (673)
T PRK00133 204 RSGELQPNVANKMKEWLE-EGLQDWDISRDA-PYFGFEI--PGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWK 279 (673)
T ss_pred cCCCCCHHHHHHHHHHHh-CCCcccceeeeC-CccceEC--CCCCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcC
Confidence 11111 00011 124444455442 23 3333 221 55555433333222111 1122221100
Q ss_pred hCCCceeccCCCCccccccccCCCceeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhH
Q 002784 440 YGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGF 519 (881)
Q Consensus 440 ~gL~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~l 519 (881)
+ +.+. ..-.|.|+++..-.......+|...|+.++...+.|.+ |-++-.+|
T Consensus 280 ---~-----~~~~----~~v~~iGkDi~~fH~i~wpa~l~a~g~~lP~~v~~hg~-----------------v~~~G~KM 330 (673)
T PRK00133 280 ---K-----DSDT----ELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNVFAHGF-----------------LTVEGAKM 330 (673)
T ss_pred ---C-----CCCc----eEEEEEeecchhHHHHHHHHHHHhCCCCCCCEEeeecc-----------------EEecCCcc
Confidence 0 0000 01246777774322223347888888877777777766 44444566
Q ss_pred HHHHHHhhccccccCCCCCCCCCCchHhHHhhhc-CCC-CceecChhHHH--HHHHHHHHHhhHHHHHHhcccC-CCCCC
Q 002784 520 RQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYT-GDVMIGPQVLR--QMSDIYRKLRGTLRYLLGNLHD-WRVGN 594 (881)
Q Consensus 520 k~~al~~i~~v~~~P~~~~~~yGaD~LRlwvas~-~~~-~D~~~s~~~l~--~~~~~~~Kl~Nt~rf~l~nl~~-f~~~~ 594 (881)
+++..+.+. |...+++||+|++|||+++. ..+ +|.+|+++.+. ..++++++++|.+.++.+.+.+ |..
T Consensus 331 SKS~GNvV~-----p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~-- 403 (673)
T PRK00133 331 SKSRGTFIW-----ARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDG-- 403 (673)
T ss_pred cccCCcccC-----HHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 666555544 65567799999999998855 556 79999998774 3567899999998777654432 221
Q ss_pred ccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHH
Q 002784 595 SISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSA 674 (881)
Q Consensus 595 ~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~ 674 (881)
.++ ....|+|++++++++++.+.++|++|+|+.|++.+++|+ +++|+|++..|++..... +..+++.+..++.+
T Consensus 404 ~~~---~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~N~yi~~~kpw~~~~~-~~~~~~~~l~~~~~ 477 (673)
T PRK00133 404 KLP---DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALA--DFANKYVDDNEPWKLAKQ-DGERLQAVCSVGLN 477 (673)
T ss_pred CCC---CCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCChhhhcC-CHHHHHHHHHHHHH
Confidence 122 245699999999999999999999999999999999997 589999999999644332 33445567777888
Q ss_pred HHHHHHHHhhcccchhHHHHHHhCCc
Q 002784 675 HLLSIVRVIAPILPHLAEDVWQNLPF 700 (881)
Q Consensus 675 il~~l~~lLaPilP~~aEEiw~~L~~ 700 (881)
+++.+++||+|||||+||+||+.|+.
T Consensus 478 ~l~~l~~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 478 LFRALAIYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred HHHHHHHHhhChhchHHHHHHHHhCC
Confidence 99999999999999999999999975
No 36
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-41 Score=400.88 Aligned_cols=335 Identities=19% Similarity=0.278 Sum_probs=252.2
Q ss_pred CceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHH
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAA 229 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~ 229 (881)
++|+|++|||||||.+||||++++++.|+++||+||+|++|.|++|||+||.||+.+|++ .+.+| .
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~-------~g~~~-------~ 66 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE-------AGISP-------Q 66 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHH-------cCCCH-------H
Confidence 479999999999999999999999999999999999999999999999999999988864 35667 6
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCcccccccccCCce
Q 002784 230 KFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLG 302 (881)
Q Consensus 230 ~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~~ 302 (881)
++|+++.+.++++|++|||..| .+++|+++.|...+ +++|+++...+..+ +|+.+..
T Consensus 67 ~~~~~~~~~~~~~l~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~----~~~~~~~---------- 130 (511)
T PRK11893 67 ELADRNSAAFKRLWEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGW----YCVRCEE---------- 130 (511)
T ss_pred HHHHHHHHHHHHHHHHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeee----ccccccc----------
Confidence 7888899999999999999655 67899999887754 56666433322111 1100000
Q ss_pred EEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEE
Q 002784 303 LAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVI 382 (881)
Q Consensus 303 l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i 382 (881)
T Consensus 131 -------------------------------------------------------------------------------- 130 (511)
T PRK11893 131 -------------------------------------------------------------------------------- 130 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccccCC
Q 002784 383 KKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFS 462 (881)
Q Consensus 383 ~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~ 462 (881)
+++..+
T Consensus 131 -------------------------~l~~~~------------------------------------------------- 136 (511)
T PRK11893 131 -------------------------FYTESE------------------------------------------------- 136 (511)
T ss_pred -------------------------cCCHHH-------------------------------------------------
Confidence 000000
Q ss_pred CceeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhcc-ccc-cCCC----
Q 002784 463 GLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ-VKW-VPPQ---- 536 (881)
Q Consensus 463 G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~-v~~-~P~~---- 536 (881)
|.+.+ ||||||+.|+++|.++|||++++.+++.+.+.+++ +.| .|+.
T Consensus 137 ---------------l~~~~------------p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~ 189 (511)
T PRK11893 137 ---------------LIEDG------------YRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNE 189 (511)
T ss_pred ---------------hcCCC------------CCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHH
Confidence 11100 78888888888888888888887776666665543 222 1221
Q ss_pred --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 190 ~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~ 269 (511)
T PRK11893 190 VISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHA 269 (511)
T ss_pred HHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEecccccccch
Confidence
Q ss_pred -------------------------------------------CCCCCCCchHhHHhhhc-CCCCceecChhHHHHH--H
Q 002784 537 -------------------------------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQM--S 570 (881)
Q Consensus 537 -------------------------------------------~~~~yGaD~LRlwvas~-~~~~D~~~s~~~l~~~--~ 570 (881)
++++||+|++|||+++. .+.+|++|+++.+... .
T Consensus 270 ~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~ 349 (511)
T PRK11893 270 VYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINA 349 (511)
T ss_pred hHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHH
Confidence 23589999999999876 6789999999998643 4
Q ss_pred HHHHHHhhHHHHHHhcccC-CCCCCccC-CCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHH
Q 002784 571 DIYRKLRGTLRYLLGNLHD-WRVGNSIS-YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYF 648 (881)
Q Consensus 571 ~~~~Kl~Nt~rf~l~nl~~-f~~~~~~~-~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl 648 (881)
++.++++|++..+.+.+.. ++ ..++ ...+...|+|++++++++++.+.++|++|+|+.|++.+++|+ +.+|+|+
T Consensus 350 ~l~~~l~n~~~r~~~~~~~~~~--~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~ 425 (511)
T PRK11893 350 DLANDLGNLAQRTLSMIAKNFD--GKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--RAANKYI 425 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHH
Confidence 5677888887544332221 11 1111 123567899999999999999999999999999999999998 3589999
Q ss_pred HHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCc
Q 002784 649 DVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 700 (881)
Q Consensus 649 ~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~ 700 (881)
+..|++..... +..+++.+..++.++++.+++||+|||||+|||||+.|+.
T Consensus 426 ~~~~pw~~~~~-~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 426 DEQAPWSLAKT-DPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred hhCCChhhhcC-CHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 99999644322 3445567888899999999999999999999999999974
No 37
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-41 Score=389.33 Aligned_cols=467 Identities=19% Similarity=0.238 Sum_probs=311.1
Q ss_pred CCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHH
Q 002784 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (881)
Q Consensus 149 ~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~ 228 (881)
.++|+|++|+|||||+|||||+++++.+||++||+||+|++|+|+.|+|+||+||+.+|++ .+++|
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~-------~g~tP------- 69 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK-------EGITP------- 69 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHH-------cCCCH-------
Confidence 3689999999999999999999999999999999999999999999999999999999984 57889
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCcccccccccCCc
Q 002784 229 AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDL 301 (881)
Q Consensus 229 ~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~ 301 (881)
+++++++.+.+++.|+.|+|++| ++.+|+++.|.+.+ |++|+|+...|.+++++.....+. +-
T Consensus 70 ~el~d~~~~~~~~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~--------dr 139 (558)
T COG0143 70 QELVDKNHEEFKELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLP--------DR 139 (558)
T ss_pred HHHHHHHHHHHHHHHHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEccccccccc--------ch
Confidence 78999999999999999999666 89999999999874 889999999999998775432211 11
Q ss_pred eEEEecCccccc----cccc----eeeeCCC---CcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchH
Q 002784 302 GLAVWTTTPWTV----PANA----AVAVNAK---LQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVP 370 (881)
Q Consensus 302 ~l~iwTTtPwTl----~an~----av~v~p~---~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~ 370 (881)
++ -.|-|+.- .|.+ +-.+.|. ..+.++.-.. .+..++ ..+|+-.....+
T Consensus 140 ~v--~g~cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~-----------------p~~r~~-~hyFf~L~~~~~ 199 (558)
T COG0143 140 YV--EGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGAT-----------------PEVREE-EHYFFRLSKFQD 199 (558)
T ss_pred he--eccCCCcCccccCcchhhhccCcCCchhcCCCeeEeeCCC-----------------cccccc-eeEEEEHHHhHH
Confidence 11 01111100 0000 0001111 1122221000 000000 112222222333
Q ss_pred HHHHHhCCce----------EEEEecccccccCCEeecCCCCCCcceeecCc-----cccccCCCCceecCCC----CCh
Q 002784 371 TLEAKWGTKL----------VIKKTLAGSDLENCRYVHPVDNRQCPVVIGGD-----YITTESGTGLVHTAPG----HGQ 431 (881)
Q Consensus 371 ~l~~~~~~~~----------~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~-----~V~~~~GTG~Vh~aPa----Hg~ 431 (881)
.|.+-..... +++.-++ ..|..+.+..+=.+..+|| |++ ||+.|.=.|.+-.+-. ...
T Consensus 200 ~L~~~~~~~~~~~~p~~~~ne~~~~i~-~GL~d~~IsR~~~~WGipv--P~~p~kv~YVWfDAligYisa~~~~~~~~~~ 276 (558)
T COG0143 200 KLLEWYESNPDFIWPANRRNEVLNFLK-EGLKDLSITRTDLDWGIPV--PGDPGKVIYVWFDALIGYISALGELAEIGDD 276 (558)
T ss_pred HHHHHHHhCccccCChHHHHHHHHHHH-ccCcccceecCCCCCCccC--CCCCCCEEEEeeccHHHHHHHhcchhccCCh
Confidence 3333221100 0111111 2366666776222233332 222 6666655554333211 122
Q ss_pred hHHHHHHHhCCCceeccCCCCccccccccCCCceeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccc
Q 002784 432 EDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQ 511 (881)
Q Consensus 432 ~Dy~~~~k~gL~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~Q 511 (881)
+||.-+-..+ ..+.-.|-|+++..-...-.-.+|...|.-++...+.|.|
T Consensus 277 ~~~~~~W~~~-------------~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~~i~ahg~----------------- 326 (558)
T COG0143 277 EDFKKFWPAD-------------DTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGF----------------- 326 (558)
T ss_pred HHHHhhCCCC-------------CceEEEEeccccCcchhhHHHHHHHhCCCCCCCEEEeeee-----------------
Confidence 3333111110 0111367888875433333448999999888888888877
Q ss_pred cccchhhHHHHHHHhhccccccCCCCCCCCCCchHhHHhhh-cCCCCceecChhHHHH--HHHHHHHHhhHHHHHHhccc
Q 002784 512 WFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQ--MSDIYRKLRGTLRYLLGNLH 588 (881)
Q Consensus 512 WFi~~~~lk~~al~~i~~v~~~P~~~~~~yGaD~LRlwvas-~~~~~D~~~s~~~l~~--~~~~~~Kl~Nt~rf~l~nl~ 588 (881)
|..+-.+|+++--..|. |...+..||+|+||||++. ...++|.+|+++.+.+ ++++.+++.|.+..+++.+.
T Consensus 327 l~~~G~KmSKSrG~~V~-----~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~ 401 (558)
T COG0143 327 LTLEGQKMSKSRGNVVD-----PDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFIN 401 (558)
T ss_pred EEECCccccccCCcEEe-----HHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667665544444 5555668999999999875 5678899999999854 58999999999988888655
Q ss_pred CCCCCCccCCC--CCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHH
Q 002784 589 DWRVGNSISYD--DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRR 666 (881)
Q Consensus 589 ~f~~~~~~~~~--~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~ 666 (881)
.+.. +.+|.. .....|+.++....++.+.+.++|+.++|++|+..+++++. ..|.||+..+||--.......+-+
T Consensus 402 k~~~-g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~--~~N~Yi~~~~PW~l~k~~~~~~~~ 478 (558)
T COG0143 402 KYFD-GVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALAS--RANKYIDEQAPWKLAKEDKRERLA 478 (558)
T ss_pred hccC-CcCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHhhcCCCchhhccCcHHHHH
Confidence 4322 223221 11278999999999999999999999999999999999984 589999999995443331122334
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCc
Q 002784 667 SCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 700 (881)
Q Consensus 667 s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~ 700 (881)
++..++.++++.+..+|+||||.+|++||+.|+.
T Consensus 479 ~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~ 512 (558)
T COG0143 479 TVLYLALELVRVLAILLYPFMPETAEKIWDQLGL 512 (558)
T ss_pred HHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCC
Confidence 5666677888999999999999999999999975
No 38
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-36 Score=323.46 Aligned_cols=458 Identities=18% Similarity=0.223 Sum_probs=305.7
Q ss_pred CCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHH
Q 002784 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (881)
Q Consensus 148 ~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~ 227 (881)
+++.|++++|..|+|..+||||+++.++.|+|+||||++|..|.|..|+|+|||.|+..|. ..+.+|
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaa-------tnG~~P------ 103 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAA-------TNGRNP------ 103 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHh-------hcCCCh------
Confidence 4579999999999999999999999999999999999999999999999999999999887 356778
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCcccc--ccccc
Q 002784 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGL--LNEFL 298 (881)
Q Consensus 228 ~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~--l~~~~ 298 (881)
.++|++..+.+++.++.+|+.++ ++++|+||.+++.+ +..|.|+++.|.+|++++++....+. ++.--
T Consensus 104 -~e~cDr~s~~f~qL~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~ 180 (578)
T KOG0436|consen 104 -PELCDRISQSFRQLWKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPC 180 (578)
T ss_pred -HHHHhhhhHHHHHHHHHhCcchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCC
Confidence 67899999999999999999655 99999999999986 67899999999999999865432211 11000
Q ss_pred CCceEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCC
Q 002784 299 PDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGT 378 (881)
Q Consensus 299 ~~~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~ 378 (881)
.. +.+-.+-+..-|....+..|..- ... .++...... .++..+|--+-...
T Consensus 181 ~~-------gk~vsmEsg~~vv~~kE~NY~Fr-LSk----------fqk~l~d~l---rkNP~fvqPs~~~~-------- 231 (578)
T KOG0436|consen 181 PP-------GKVVSMESGNPVVWRKEDNYFFR-LSK----------FQKPLEDHL---RKNPRFVQPSYFHN-------- 231 (578)
T ss_pred CC-------CceeeeccCCceeEecccceeee-HHh----------hhhHHHHHH---hcCCCccCchHHHH--------
Confidence 00 01111111112222233344321 000 000000000 00111111111101
Q ss_pred ceEEEEecccccccCCEeecCCC--CCCcceeecCc-----cccccCCCCceecCCCCChhHHHHHHHhCCCceeccC--
Q 002784 379 KLVIKKTLAGSDLENCRYVHPVD--NRQCPVVIGGD-----YITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVD-- 449 (881)
Q Consensus 379 ~~~i~~~~~G~~L~g~~~~~Pl~--~~~~pi~i~~~-----~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd-- 449 (881)
+|+..++- .|.++.+..|-. +..+|+ |+| ||+.|.=-| .+++|.
T Consensus 232 --qVl~~lkt-glpDlSISRpsarl~WGIPv--P~ddsQtIYVWfDAL~n----------------------YiSvig~~ 284 (578)
T KOG0436|consen 232 --QVLSWLKT-GLPDLSISRPSARLDWGIPV--PGDDSQTIYVWFDALLN----------------------YISVIGYP 284 (578)
T ss_pred --HHHHHHHc-CCCcccccChhhhcccCCCC--CCCCcceEEEeHHHHhh----------------------HHHhhcCC
Confidence 11111111 255555555432 344554 333 343332111 112221
Q ss_pred -----CCCccccc---cccCCCceeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHH
Q 002784 450 -----DEGKFTEE---AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQ 521 (881)
Q Consensus 450 -----~~G~~~~~---~~~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~ 521 (881)
.++.+.-. .-...|+++++-.....-.+|.+.|+-+++..+.|++ |..+--+|.+
T Consensus 285 ~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlplP~~I~vHgh-----------------wt~ngmKMsK 347 (578)
T KOG0436|consen 285 NKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFVHGH-----------------WTKNGMKMSK 347 (578)
T ss_pred chhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCCccEEEEeee-----------------eeecceecch
Confidence 11222111 1246777776544444559999999999999999998 6666667888
Q ss_pred HHHHhhccccccCCCCCCCCCCchHhHHhh-hcCCCCceecChhHHHHH--HHHHHHHhhHHHHHHh---cccCCCCCCc
Q 002784 522 AAMDAIGQVKWVPPQEAPGYGADVLRLWVS-SVDYTGDVMIGPQVLRQM--SDIYRKLRGTLRYLLG---NLHDWRVGNS 595 (881)
Q Consensus 522 ~al~~i~~v~~~P~~~~~~yGaD~LRlwva-s~~~~~D~~~s~~~l~~~--~~~~~Kl~Nt~rf~l~---nl~~f~~~~~ 595 (881)
+.-+.++ |-+.+.+||+|++|||+. .+.++.|.+|+++.+... .++.++|+|++..+++ |..+..+.-.
T Consensus 348 SLGNvvd-----P~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~ 422 (578)
T KOG0436|consen 348 SLGNVVD-----PFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLV 422 (578)
T ss_pred hhccccC-----HHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccc
Confidence 8888877 666778999999999976 678899999999988644 6788899999988887 2333222111
Q ss_pred cCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhcccc-CCCCChH-HHHHHHHHHH
Q 002784 596 ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLY-TGGTTSF-TRRSCQTVLS 673 (881)
Q Consensus 596 ~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy-~~~~~~~-~r~s~q~vL~ 673 (881)
.+.......+.-+.+.++++.+.+.+.|++|.+.+|+.++..-++. .|-|++..+||-. .+++++. .-.....++.
T Consensus 423 ~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~--~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~l 500 (578)
T KOG0436|consen 423 VDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNA--GNTLVQQRAPWKLFKDSQVSAEELAKVLHIIL 500 (578)
T ss_pred cCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHh--hhhhhhhcCCceeccccCccHHHHHHHHHHHH
Confidence 1111223445668889999999999999999999999999987754 7999999999532 2222222 2233445566
Q ss_pred HHHHHHHHHhhcccchhHHHHHHhCCcc
Q 002784 674 AHLLSIVRVIAPILPHLAEDVWQNLPFA 701 (881)
Q Consensus 674 ~il~~l~~lLaPilP~~aEEiw~~L~~~ 701 (881)
++|+++.++|+||+|-++.+++++|+-.
T Consensus 501 e~lrv~~illqpv~Psls~~llsqlgvs 528 (578)
T KOG0436|consen 501 EVLRVIGILLQPVAPSLSLRLLSQLGVS 528 (578)
T ss_pred HHHHHHHHHHccccchhHHHHHHHcCCC
Confidence 7899999999999999999999999753
No 39
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=9e-35 Score=328.94 Aligned_cols=131 Identities=34% Similarity=0.596 Sum_probs=119.4
Q ss_pred CceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhccccc--ccCCChHHHHHH
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDA--KKDLTPSKLRAK 227 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~--~~~~~p~~~~~~ 227 (881)
++|+|++|||||||.|||||+++++++||++||+||+|++|+|++||||||+|||..|+++++... ..+++|++|++.
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999998865432 246899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeE
Q 002784 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAV 280 (881)
Q Consensus 228 ~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~ 280 (881)
|++|++++++.++++|++||+++||+++|+|+||.|.+.+ |++|++++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~ 140 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLV 140 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEE
Confidence 9999999999999999999999999999999999999875 7888876655443
No 40
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.98 E-value=9.8e-33 Score=307.46 Aligned_cols=126 Identities=55% Similarity=0.956 Sum_probs=115.6
Q ss_pred CceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhccccc---ccCCChHHHHH
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDA---KKDLTPSKLRA 226 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~---~~~~~p~~~~~ 226 (881)
++|+|++|||||||.+|||||++++++|+++||++|+|++|.|++||||||+|||.+|++.++... ..+++++++++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999998865432 34678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceec
Q 002784 227 KAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSR 275 (881)
Q Consensus 227 ~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~ 275 (881)
.|++||+++++.++++|++||++.||+++|+|++++|.+.+ |++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~ 136 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYR 136 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEec
Confidence 99999999999999999999999999999999999999875 67777544
No 41
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.96 E-value=9.6e-28 Score=244.45 Aligned_cols=179 Identities=45% Similarity=0.845 Sum_probs=154.7
Q ss_pred cChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCc-cCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 002784 561 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNS-ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFI 639 (881)
Q Consensus 561 ~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~-~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~ 639 (881)
||.++++++.++++||||++||+++++.++.+... .....+...|+|+++++++++++++++|++|+|++|++.+++|+
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~ 80 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFC 80 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 57889999999999999999999999988765321 12245678999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeecCCC
Q 002784 640 IVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWP 719 (881)
Q Consensus 640 ~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP 719 (881)
++++|++|++.+|||+|++..++..+++++.+|+++++.++++|+|||||+|||+|+.|+.. ...++|+.++||
T Consensus 81 ~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~------~~~~~v~~~~wP 154 (180)
T cd07960 81 TVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGE------KKEESVFLEDWP 154 (180)
T ss_pred HHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcccc------CCCCCeeccCCC
Confidence 98999999999999999876555556778899999999999999999999999999999742 012589999999
Q ss_pred CcchhcCCCChhhHHHHHHHHHHHHHHH
Q 002784 720 VLDEKWRTFPVGEIYFWGKILELRTEVN 747 (881)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~l~~lr~~v~ 747 (881)
++++.+.+ ++++..++.++++|..|+
T Consensus 155 ~~~~~~~~--~~~~~~~~~~~~i~~~~~ 180 (180)
T cd07960 155 ELPEEWKD--EELEEKWEKLLALRDEVN 180 (180)
T ss_pred CCcccccC--HHHHHHHHHHHHHHHhhC
Confidence 98877765 677888999999998763
No 42
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.95 E-value=4.4e-27 Score=240.21 Aligned_cols=176 Identities=23% Similarity=0.409 Sum_probs=142.7
Q ss_pred cChhHHHHHHH-HHHHHhhHHHHHHh--cccCCCCCC-ccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Q 002784 561 IGPQVLRQMSD-IYRKLRGTLRYLLG--NLHDWRVGN-SISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQ 636 (881)
Q Consensus 561 ~s~~~l~~~~~-~~~Kl~Nt~rf~l~--nl~~f~~~~-~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~ 636 (881)
||++.+++..+ +++||||++||+++ ++.++.+.. ..+...+..+|+|+++++++++++++++|++|+|+.|++.++
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 56778888877 99999999999987 666665431 123345788999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhCCccccccCCCCCcceeec
Q 002784 637 RFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 716 (881)
Q Consensus 637 ~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~ 716 (881)
+|++. ++++|++.+|+++|++. ++..+++++.++.++++.++++||||+||+|||+|+++++. .+...+||+.+
T Consensus 81 ~f~~~-~~~~Y~e~~K~~~~~~~-~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~----~~~~~~si~~~ 154 (183)
T cd07961 81 EFIDE-LTNWYIRRNRKRFWGEE-GDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRE----LGDAPESVHLL 154 (183)
T ss_pred HHHHH-hhhhHhhhchHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh----cCCCCCceeee
Confidence 99985 77999999999999876 34457789999999999999999999999999999999742 01113589999
Q ss_pred CCCCcchhcCCCChhhHHHHHHHHHHHH
Q 002784 717 KWPVLDEKWRTFPVGEIYFWGKILELRT 744 (881)
Q Consensus 717 ~wP~~~~~~~~~~~~~~~~~~~l~~lr~ 744 (881)
+||.+++.+.+ +++...++.+.++.+
T Consensus 155 ~wP~~~~~~~~--~~~~~~~~~l~~~i~ 180 (183)
T cd07961 155 DWPEVDESLID--EELEEAMELVREIVE 180 (183)
T ss_pred cCCCCcccccC--HHHHHHHHHHHHHHH
Confidence 99998876655 455555555555443
No 43
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.93 E-value=1.9e-26 Score=255.01 Aligned_cols=127 Identities=39% Similarity=0.792 Sum_probs=115.4
Q ss_pred ceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHH
Q 002784 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAK 230 (881)
Q Consensus 151 ~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~ 230 (881)
+|+|++|||||||.+||||+++++++|+++||++|+|++|.|++||||||+|||.+|++.++... +...++++.+.|++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~-~~~~~~~~~~~~~~ 79 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKK-KTIWIEEFREDPKE 79 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCccc-ccccHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999998765432 34457889999999
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceee
Q 002784 231 FAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIY 278 (881)
Q Consensus 231 ~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy 278 (881)
||+++++.++++|++||++.||+++|.|++|+|...+ +++|++++..+
T Consensus 80 ~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~ 134 (312)
T cd00668 80 FVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTH 134 (312)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecc
Confidence 9999999999999999999999999999999998875 78888766443
No 44
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.93 E-value=7.3e-28 Score=272.47 Aligned_cols=119 Identities=25% Similarity=0.385 Sum_probs=103.6
Q ss_pred eEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHH
Q 002784 152 FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKF 231 (881)
Q Consensus 152 f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~ 231 (881)
|+|++|+|||||.|||||++.++++|+++||+||+|++|.|+.|+|+||+||+.+|++ .+++| .+|
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~-------~g~~p-------~~~ 66 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEK-------QGIDP-------EEF 66 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHH-------TTS-H-------HHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHH-------cCCCH-------HHH
Confidence 7899999999999999999999999999999999999999999999999999999984 46788 789
Q ss_pred HHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCC
Q 002784 232 AKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSA 286 (881)
Q Consensus 232 a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~ 286 (881)
++++.+.+++.|+++||++| ++.+|+++.|.+.+ |++|+++...|.++.+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~ 126 (391)
T PF09334_consen 67 CDKYSAKFKELLEALNISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSC 126 (391)
T ss_dssp HHHHHHHHHHHHHHTT---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHcCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCc
Confidence 99999999999999999666 78999999998874 8899999999999988664
No 45
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.92 E-value=2e-25 Score=247.46 Aligned_cols=119 Identities=28% Similarity=0.453 Sum_probs=104.3
Q ss_pred ceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHH
Q 002784 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAK 230 (881)
Q Consensus 151 ~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~ 230 (881)
+|+|++|||||||.|||||+++++++|+++||+||+|++|.|++|||+||+||+.+|++ .+++| ++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~-------~g~~~-------~e 66 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE-------EGVTP-------QE 66 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH-------cCCCH-------HH
Confidence 58999999999999999999999999999999999999999999999999999999974 35677 67
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecC
Q 002784 231 FAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVS 285 (881)
Q Consensus 231 ~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~ 285 (881)
+++++++.+++++++||+. ++.+++|+++.|...+ +++|+++...+..+.+..
T Consensus 67 ~~~~~~~~~~~~l~~LgI~--~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~ 126 (319)
T cd00814 67 LCDKYHEIFKDLFKWLNIS--FDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVS 126 (319)
T ss_pred HHHHHHHHHHHHHHHcCCc--CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCC
Confidence 8999999999999999995 4578899999887754 678887776666665543
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.92 E-value=9.2e-24 Score=244.51 Aligned_cols=338 Identities=16% Similarity=0.149 Sum_probs=206.9
Q ss_pred CCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHH
Q 002784 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (881)
Q Consensus 148 ~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~ 227 (881)
+..++|++ .|+|+|.+||||+++++..|+++||+||+||+|.|+.|+|.||.+|...|.+ .+.+|
T Consensus 22 ~~v~~yvc--gPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~-------~g~~~------ 86 (463)
T PRK00260 22 GKVKMYVC--GPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANE-------EGESI------ 86 (463)
T ss_pred CcceEEEe--CCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHH-------cCCCH------
Confidence 34466665 4556799999999999999999999999999999999999999999998863 34566
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-ccccCCCccCCccchhhce---ecCCceeceeee-EeeecCCCCCcccccccccCCce
Q 002784 228 AAKFAKATVKAQMASFKRYGV-WADWNNPYLTLDPEYEAAQ---YPEGHVSRSIYA-VFRMVSAPPSTSGLLNEFLPDLG 302 (881)
Q Consensus 228 ~~~~a~~~i~~~~~~f~rlGi-~~DW~~~y~T~dp~y~~~q---Y~~g~~s~siy~-~f~~~~~~~~~~~~l~~~~~~~~ 302 (881)
+++++++++.++++|++||+ ..||.....+..+.+.+.. +++|+++.+... -|.+..
T Consensus 87 -~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~----------------- 148 (463)
T PRK00260 87 -KELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRK----------------- 148 (463)
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEeccc-----------------
Confidence 88999999999999999999 5677543333334444332 667775432110 011100
Q ss_pred EEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEE
Q 002784 303 LAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVI 382 (881)
Q Consensus 303 l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i 382 (881)
.-+|..
T Consensus 149 ---------------------~~~yg~----------------------------------------------------- 154 (463)
T PRK00260 149 ---------------------FPDYGK----------------------------------------------------- 154 (463)
T ss_pred ---------------------cccccc-----------------------------------------------------
Confidence 001221
Q ss_pred EEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccc-cccC
Q 002784 383 KKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEE-AGKF 461 (881)
Q Consensus 383 ~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~-~~~~ 461 (881)
|.+..... + ..+.-|..+.+ -+++.||.+|++....-. + +... +...
T Consensus 155 --------ls~~~~~~--------~-~~~~~~~~~~~--------K~~~~DF~Lwk~~~~~~~------~-w~s~~g~gr 202 (463)
T PRK00260 155 --------LSGRNLDE--------L-QAGARVEVAEE--------KRDPLDFALWKAAKPGEP------S-WESPWGKGR 202 (463)
T ss_pred --------CCCCCHHH--------H-hccCcCCcccC--------CCCccccceecCCCCCCC------C-CCCCCCCCC
Confidence 10000000 0 00000100000 245566666654321000 0 0000 0123
Q ss_pred CCceeccchhHHHHHHHHhcCCccceeccccccccccC--------CCCCe-EEeeccccc-cchhhHHHHHHHhhcccc
Q 002784 462 SGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWR--------TKKPT-IFRATEQWF-ASVEGFRQAAMDAIGQVK 531 (881)
Q Consensus 462 ~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wR--------t~~Pi-i~r~t~QWF-i~~~~lk~~al~~i~~v~ 531 (881)
-|.++ |+.....+.|.. ..-++.....|.+||.-+ ++.|. =+-..-.|. ++-.+|+++.-+.+.
T Consensus 203 pgWhi--ecsam~~~~lg~-~~Dih~gG~DlifpHh~neiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~--- 276 (463)
T PRK00260 203 PGWHI--ECSAMSTKYLGE-TFDIHGGGADLIFPHHENEIAQSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFT--- 276 (463)
T ss_pred CChhH--HHHHHHHHhcCC-CcceecCccccCCCchHhHHHHHHHhcCCCcceEEEEccEEccCCCcccCcCCCCCC---
Confidence 45555 344444444432 122223333444444211 12221 000001111 122345444333222
Q ss_pred ccCCCCCCCCCCchHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHH
Q 002784 532 WVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQ 611 (881)
Q Consensus 532 ~~P~~~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~ 611 (881)
|...+++||+|++|||++++.+.+|++|+++.+.++.+.++||+|+++++.. ...|+|++++
T Consensus 277 --~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~----------------~~~d~~~~~~ 338 (463)
T PRK00260 277 --IRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERLYNALAETAL----------------GEDDEALLAE 338 (463)
T ss_pred --HHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHHHHHHhhh----------------ccchhhHHHH
Confidence 3335568999999999999999999999999999999999999999998641 1357899999
Q ss_pred HHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHhhHHHHHH
Q 002784 612 LENIVKNIRESYE-SYQFFKIFQIIQRFIIVDLSNFYFDV 650 (881)
Q Consensus 612 l~~li~~v~~~ye-~y~f~~a~~~i~~F~~~~ls~~Yl~~ 650 (881)
++.+++++.++|+ +|++.+|+..|++|+.. .|.|++.
T Consensus 339 l~~~~~~~~~al~ddln~~~Al~~l~~lv~~--~n~~~~~ 376 (463)
T PRK00260 339 LEEFKERFIEAMDDDFNTPEALAVLFELARE--INRALET 376 (463)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHHhhc
Confidence 9999999999995 99999999999999743 5677754
No 47
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.90 E-value=1.2e-22 Score=200.99 Aligned_cols=153 Identities=30% Similarity=0.498 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 002784 605 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA 684 (881)
Q Consensus 605 Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLa 684 (881)
|+|+++++++++++++++|++|+|+.|++.+++|++++|||+|++.+||++|++..++. |+ +++++.++++.+++||+
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~-~~-~~~~l~~~l~~~~~ll~ 78 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES-RE-AQYTLYEILKILLILLS 78 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH-HH-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH-HH-HHHHHHHHHHHHhhccC
Confidence 89999999999999999999999999999999999999999999999999999887776 66 99999999999999999
Q ss_pred cccchhHHHHHHhCCccccccCCCCCcceeecCCCCcchhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCcc
Q 002784 685 PILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLE 764 (881)
Q Consensus 685 PilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~R~~k~i~~sle 764 (881)
|||||+|||+|++|.... -..++||+.+.||. +....+ ... + +...++...+.+.++..|+.+.++++.+
T Consensus 79 P~~P~~aEeiw~~l~~~~----~~~~~si~~~~~p~-~~~~~~--~~~-~--~~~~~~~~~v~~~i~~~r~~~~i~~~~~ 148 (153)
T PF08264_consen 79 PFMPFIAEEIWQRLKSEK----LGEKSSIFLEKWPE-DPEFID--EEL-E--EEAFEILKEVVQVIRKIRKEKNIKPKEP 148 (153)
T ss_dssp TTSHHHHHHHHHHCTTHH----TTSSSSGGGS------GGGGH--HHH----HHHHHHHHHHHHHHHHHHHCCEESTTCG
T ss_pred CCCcHHHHHHHHHhhhcc----CCCCCeeeeCCCCC-Chhhhc--HHH-H--HHHHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 999999999998773210 01146899999997 443211 111 0 3445555667778888999999999999
Q ss_pred eEEEE
Q 002784 765 AKVYL 769 (881)
Q Consensus 765 ~~v~I 769 (881)
.+|+|
T Consensus 149 ~~v~i 153 (153)
T PF08264_consen 149 LKVVI 153 (153)
T ss_dssp EEEEE
T ss_pred CCccC
Confidence 98876
No 48
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.89 E-value=1.4e-21 Score=232.83 Aligned_cols=353 Identities=16% Similarity=0.157 Sum_probs=231.6
Q ss_pred CceEEecCCCCCCCcccchHHHHHHHHHHHHHHHH-hCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCC-hHHHHHH
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKL-LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLT-PSKLRAK 227 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~r-m~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~-p~~~~~~ 227 (881)
=.+|++.|-+| +.+|||||+++|..||+.||.+ +.||+|.|++|+|.||-+|..+|.+ .+++ +
T Consensus 61 v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~-------~g~~~~------ 125 (651)
T PTZ00399 61 VRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRARE-------EKLSIF------ 125 (651)
T ss_pred eEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHH-------hCCCcH------
Confidence 46899999999 9999999999999999999999 9999999999999999999999874 4566 6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCcccccccccCC
Q 002784 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPD 300 (881)
Q Consensus 228 ~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~ 300 (881)
.++|+++++.+.++|++|||..+ ..+.|. .+|...+ .++|+.|.+ + .+
T Consensus 126 -~el~~~~~~~f~~d~~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~--------~-------------gs 180 (651)
T PTZ00399 126 -LELARKWEKEFFEDMKALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYES--------N-------------GS 180 (651)
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEE--------C-------------Ce
Confidence 67889999999999999999765 455555 4555543 456664321 0 00
Q ss_pred ceEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCce
Q 002784 301 LGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKL 380 (881)
Q Consensus 301 ~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~ 380 (881)
+|+-+-.-... ...|.
T Consensus 181 vyFd~~~f~~~------------~~~Yg---------------------------------------------------- 196 (651)
T PTZ00399 181 VYFDVEAFRKA------------GHVYP---------------------------------------------------- 196 (651)
T ss_pred EEEEchhcccc------------hhhHH----------------------------------------------------
Confidence 11100000000 00010
Q ss_pred EEEEecccccccCCEeecCCCCCCcceeecCccccccCCCCce-ecC-CCCChhHHHHHHHhCCCceeccCCCCcccccc
Q 002784 381 VIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLV-HTA-PGHGQEDYVTSLKYGLPILSPVDDEGKFTEEA 458 (881)
Q Consensus 381 ~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~V-h~a-PaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~ 458 (881)
.| .|...+ +-..+..|.|.| ... =...+.||..|+... | ++.. +....
T Consensus 197 ---------~L------~p~~~~--------~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~k-p-----gep~-W~Spw 246 (651)
T PTZ00399 197 ---------KL------EPESVA--------DEDRIAEGEGALGKVSGEKRSPNDFALWKASK-P-----GEPS-WDSPW 246 (651)
T ss_pred ---------hh------ChhhcC--------CHHHHhcccCCccccCcCCCCCccHHhhCCCC-C-----CCCC-CCCCC
Confidence 00 111000 011111233311 111 145677888775431 1 0111 11111
Q ss_pred c-cCCCceeccchhHHHHHHHHhcCCccceeccccccccc---------cCCCCC--eEEeeccccccchhhHHHHHHHh
Q 002784 459 G-KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYD---------WRTKKP--TIFRATEQWFASVEGFRQAAMDA 526 (881)
Q Consensus 459 ~-~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~---------wRt~~P--ii~r~t~QWFi~~~~lk~~al~~ 526 (881)
| ...|.++ ++....-+.|.. .+.++...+.+.+||. ...+.| =.+.-+-.|-++-.+|+++..+.
T Consensus 247 G~GrPGWHi--ECsam~~~~lg~-~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNf 323 (651)
T PTZ00399 247 GKGRPGWHI--ECSAMASNILGD-PIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNF 323 (651)
T ss_pred CCCCCCchH--HHHHHHHHHcCC-cceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCc
Confidence 2 3567777 566666677765 4666777777888881 111111 12222233444445677766555
Q ss_pred hccccccCCCCCCCCCCchHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHH
Q 002784 527 IGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQ 606 (881)
Q Consensus 527 i~~v~~~P~~~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr 606 (881)
+. |..++.+||+|++|||+++..+.+|++|+++.+..+.+..++++|++..+.+.+.+.... ....+...|+
T Consensus 324 It-----p~dlLekygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~~---~~~~~~~~d~ 395 (651)
T PTZ00399 324 IT-----IRQALSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESELT---SPQKWTQHDF 395 (651)
T ss_pred cc-----HHHHHHHcChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccccCCHHHH
Confidence 44 555667899999999999889999999999999988888899999988776554432111 1123457899
Q ss_pred HHHHHHHHHHHHHHHHH-hccChHHHHHHHHHHHHHHhhHHHHH
Q 002784 607 YALFQLENIVKNIRESY-ESYQFFKIFQIIQRFIIVDLSNFYFD 649 (881)
Q Consensus 607 ~il~~l~~li~~v~~~y-e~y~f~~a~~~i~~F~~~~ls~~Yl~ 649 (881)
|++..++.+.+.+.++| ++|+++.|+..|++|+. .+|.|++
T Consensus 396 ~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~--~~N~yi~ 437 (651)
T PTZ00399 396 ELNELFEETKSAVHAALLDNFDTPEALQALQKLIS--ATNTYLN 437 (651)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HHHHHHh
Confidence 99999999999999999 78999999999999984 4799996
No 49
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.88 E-value=9e-23 Score=225.58 Aligned_cols=116 Identities=33% Similarity=0.573 Sum_probs=104.6
Q ss_pred ceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHH
Q 002784 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAK 230 (881)
Q Consensus 151 ~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~ 230 (881)
||+|++|||||||.+||||+++++++|+++||+||+|++|.|++|||+||+||+.+|++. +.+| ++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~-------g~~~-------~e 66 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI-------GRDP-------ED 66 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc-------CCCH-------HH
Confidence 689999999999999999999999999999999999999999999999999999998753 3454 88
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeE
Q 002784 231 FAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAV 280 (881)
Q Consensus 231 ~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~ 280 (881)
|++++.+.+++++++||++.||+++++|++|+|.+.+ +++|++++..+..
T Consensus 67 ~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v 123 (314)
T cd00812 67 WTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPV 123 (314)
T ss_pred HHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCcee
Confidence 9999999999999999999999999999999998864 6788876654433
No 50
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.81 E-value=1.9e-19 Score=208.27 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=78.8
Q ss_pred CCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHH
Q 002784 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (881)
Q Consensus 148 ~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~ 227 (881)
++.++|++- |||+|.+||||+++++..|+++||.+++||+|.|+.|+|.||.+|..+|.+ .+++|
T Consensus 20 ~~v~~yvcg--ptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~-------~g~~~------ 84 (465)
T TIGR00435 20 GKVKMYVCG--PTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARE-------NGESV------ 84 (465)
T ss_pred CcceEEEec--CccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHH-------cCCCH------
Confidence 345666653 378889999999999999999999999999999999999999999998873 46788
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccC
Q 002784 228 AAKFAKATVKAQMASFKRYGVWADWN 253 (881)
Q Consensus 228 ~~~~a~~~i~~~~~~f~rlGi~~DW~ 253 (881)
+++++++++.++++|++|||..|+-
T Consensus 85 -~e~a~~~~~~f~~dl~~LgI~~d~~ 109 (465)
T TIGR00435 85 -YEVSERFIEAYFEDMKALNVLPPDL 109 (465)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCCcC
Confidence 6788899999999999999998864
No 51
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.3e-19 Score=190.82 Aligned_cols=424 Identities=19% Similarity=0.223 Sum_probs=253.5
Q ss_pred CCCceEEecCCCCCCCcccchHHHHHHH-HHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHH
Q 002784 148 DGENFVLHDGPPYANGNLHMGHALNKIL-KDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRA 226 (881)
Q Consensus 148 ~~~~f~i~dgPPYaNG~lHiGHaln~il-kDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~ 226 (881)
++..-+|+..-||+|..+|+|+....++ +||++||.+++|++.+|+.|+|+.|..+|.+|++ ++++|
T Consensus 12 n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkale-------eg~tP----- 79 (567)
T KOG1247|consen 12 NERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALE-------EGLTP----- 79 (567)
T ss_pred CccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHH-------ccCCH-----
Confidence 4456788999999999999999999888 9999999999999999999999999999999984 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhh-ce------ecCCceeceeeeEeeecCCCCCcccccccccC
Q 002784 227 KAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEA-AQ------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLP 299 (881)
Q Consensus 227 ~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~-~q------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~ 299 (881)
++.++++...++....-++|.+| .+-+|+.|.... .| |+.|+.+...-..+++.. +.. ++.
T Consensus 80 --~elcdKyh~ihk~vy~Wf~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~v----c~~----fla 147 (567)
T KOG1247|consen 80 --QELCDKYHGIHKVVYDWFKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEV----CDT----FLA 147 (567)
T ss_pred --HHHHHhcchhHHHHHHhhccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehh----hcc----ccc
Confidence 77888888889999999999555 666776665533 44 666665543222222211 000 000
Q ss_pred CceEEEecCcccccccc------------------ceeeeCCCC-----cEEEEEEcccccCCCCCcccCCCCCCCcccC
Q 002784 300 DLGLAVWTTTPWTVPAN------------------AAVAVNAKL-----QYAVVEIQSLLEGDSAAPANKKSRPGNVLKD 356 (881)
Q Consensus 300 ~~~l~iwTTtPwTl~an------------------~av~v~p~~-----~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (881)
+-++. -+.|.+ .+....|.. .|.+-
T Consensus 148 dr~ve------g~cp~C~yd~ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~-------------------------- 195 (567)
T KOG1247|consen 148 DRFVE------GKCPFCGYDDARGDQCDKCGKLVNAAELKIPKCKICQAGPVVR-------------------------- 195 (567)
T ss_pred chhhh------ccCCCCCCccccchhhhhhhhhcCHHHhcCcchheeccCCeee--------------------------
Confidence 00000 011100 000000000 00000
Q ss_pred CCceEEEEecc-chHHHHHHhCCceEEEEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHH
Q 002784 357 QKKVFIIVASD-LVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYV 435 (881)
Q Consensus 357 ~~~~~~iva~~-~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~ 435 (881)
...++.++-+ +-.++++ ++..+ ++-+.....++.=..
T Consensus 196 -~t~h~Fl~L~kl~~~lee--------------------------------------~~~~~---~~~~~WS~Na~~it~ 233 (567)
T KOG1247|consen 196 -QTQHLFLSLDKLEPRLEE--------------------------------------WLRRT---LVEGDWSQNAQNITR 233 (567)
T ss_pred -eeeEEEEEhHHhHHHHHH--------------------------------------HHHhc---cccCCCccchHHHHH
Confidence 0112222211 1111111 11111 111112222333345
Q ss_pred HHHHhCCCceeccCCCCcccccc--ccCCCc--eeccchhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccc
Q 002784 436 TSLKYGLPILSPVDDEGKFTEEA--GKFSGL--DVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQ 511 (881)
Q Consensus 436 ~~~k~gL~~~~~vd~~G~~~~~~--~~~~G~--~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~Q 511 (881)
.|.+-||...|+-.|- ++--.+ ..|.++ .|+.||.. |.+. +...|.-.| .+
T Consensus 234 sWlk~gl~pRCiTRDL-kWGtpVPle~fk~KVfYVWFDA~I---------GYls----it~~yt~ew-----------~k 288 (567)
T KOG1247|consen 234 SWLKDGLKPRCITRDL-KWGTPVPLEKFKDKVFYVWFDAPI---------GYLS----ITKNYTDEW-----------EK 288 (567)
T ss_pred HHHHcccccccccccc-ccCCCcChhhhcccEEEEEEcCcc---------eEEE----eehhhhHHH-----------HH
Confidence 5666677665543221 000000 123332 23333321 1111 111111112 23
Q ss_pred cccchh---hHHHHHHHhhc-cccccCCC----------------------------------------CCCCCCCchHh
Q 002784 512 WFASVE---GFRQAAMDAIG-QVKWVPPQ----------------------------------------EAPGYGADVLR 547 (881)
Q Consensus 512 WFi~~~---~lk~~al~~i~-~v~~~P~~----------------------------------------~~~~yGaD~LR 547 (881)
|+-+-+ -..-.+.|++. +.-++|.. ..-..++|++|
T Consensus 289 WwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWR 368 (567)
T KOG1247|consen 289 WWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWR 368 (567)
T ss_pred HhcCHhhhhHHHHhccCCCcceeeecchhhhcCCCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHH
Confidence 444333 22333333333 34455554 22367899999
Q ss_pred HHhhhcCCC-CceecChhHH--HHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHh
Q 002784 548 LWVSSVDYT-GDVMIGPQVL--RQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYE 624 (881)
Q Consensus 548 lwvas~~~~-~D~~~s~~~l--~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye 624 (881)
||+++..+. +|..|++..+ +..+++++.|+|++..++..+..... ..+|...+..-|+-++..++++..+..++||
T Consensus 369 yYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~-g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~me 447 (567)
T KOG1247|consen 369 YYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYN-GVVPEMELTSGDKKLLEDVNELLAKYVAAME 447 (567)
T ss_pred HHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhC-CcccceeecCChHHHHHHHHHHHHHHHHHHH
Confidence 999988764 5988888766 56799999999998777665543222 2444445555699999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHH-HHHHHHHHHHHHHHHHhhcccchhHHHHHHhCC
Q 002784 625 SYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRR-SCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLP 699 (881)
Q Consensus 625 ~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~-s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L~ 699 (881)
.-+.++|++.+++... ..|.|++..++ +.....+..|. .+..+-..++..+..||.|+||.++.+|...+.
T Consensus 448 ~vklr~~l~~~m~is~--~GNqylQ~~~~--~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqln 519 (567)
T KOG1247|consen 448 KVKLREALKTAMEISR--RGNQYLQENTD--NKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLN 519 (567)
T ss_pred HHHHHHHHHHHHHHHH--hhhHHHhcccc--cchhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhC
Confidence 9999999999998764 59999999874 32222233332 244455678888899999999999999999885
No 52
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.80 E-value=6.6e-21 Score=192.33 Aligned_cols=156 Identities=23% Similarity=0.408 Sum_probs=100.4
Q ss_pred eceeeeEeeecCCCCCcccccccccCCceEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCc
Q 002784 274 SRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNV 353 (881)
Q Consensus 274 s~siy~~f~~~~~~~~~~~~l~~~~~~~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~ 353 (881)
|.+..+.|++.+. +..+.|+||||+||+|.+.|+++|++.-+ +.
T Consensus 7 S~G~~i~F~i~~~-------------~~~i~vFTTrpdTifGvtfials~~H~lv--~~--------------------- 50 (185)
T PF13603_consen 7 SEGAEIDFKIKGS-------------NEKIEVFTTRPDTIFGVTFIALSPEHPLV--KK--------------------- 50 (185)
T ss_dssp EEEEEEEEEBTTS-------------SCEEEEEES-GGGGGG--EEEEETTSCHH--HH---------------------
T ss_pred cccEEEEEEecCC-------------CCEEEEEECCcchhhCceEEEECCCCHHH--Hh---------------------
Confidence 5678888988663 24788999999999999999999998632 10
Q ss_pred ccCCCceEEEEecc--chHHHHHHh-CCc-e---EEEEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecC
Q 002784 354 LKDQKKVFIIVASD--LVPTLEAKW-GTK-L---VIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTA 426 (881)
Q Consensus 354 ~~~~~~~~~iva~~--~~~~l~~~~-~~~-~---~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~a 426 (881)
+ ++. .+..+.+.. ... . .-..+..|- +.|.++.||++++++|||+ ++||.+++|||+||.+
T Consensus 51 --------l--~~~~~~l~~fi~~~~~~~~~~~~~~~~~k~Gv-~tg~~aihP~t~~~iPI~v-a~yVl~~yGtgAVmgv 118 (185)
T PF13603_consen 51 --------L--AENNPELQEFIEKCKKIKNSERNKDFKEKEGV-FTGLYAIHPLTGKKIPIYV-ANYVLMDYGTGAVMGV 118 (185)
T ss_dssp --------C--TTTHHHHHHHHHHHHTS-HHHHHHCSSS--EE-EEEEEEE-TTTS-EEEEEE-ETTS-TTSTTSEEEE-
T ss_pred --------h--hhhhhhHHHHHHHHhcCCHhHhhhhccccccC-cCCCEEECCCCCCCccEEE-ECceeecCCcceEEEc
Confidence 0 000 111111111 000 0 001134454 6789999999999999988 8999999999999999
Q ss_pred CCCChhHHHHHHHhCCCceeccCC----------------CCccccccccCCCceeccchhHHHHHHHH
Q 002784 427 PGHGQEDYVTSLKYGLPILSPVDD----------------EGKFTEEAGKFSGLDVLGDGNVAVVKYLD 479 (881)
Q Consensus 427 PaHg~~Dy~~~~k~gL~~~~~vd~----------------~G~~~~~~~~~~G~~v~~~a~~~ii~~L~ 479 (881)
|||+++||++|++||||+..+|.. +|.+. +.++|.||.. ++|+++|++.|+
T Consensus 119 PahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~~f~Gl~~-~eA~~~I~~~Le 185 (185)
T PF13603_consen 119 PAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NSGEFNGLSS-KEAREKIIKKLE 185 (185)
T ss_dssp CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE--SSGGGTTSBH-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eCCCCCCCCH-HHHHHHHHHHhC
Confidence 999999999999999998766532 24444 4579999999 799999999985
No 53
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.80 E-value=3.6e-19 Score=199.88 Aligned_cols=327 Identities=13% Similarity=0.119 Sum_probs=199.7
Q ss_pred CCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHH
Q 002784 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (881)
Q Consensus 149 ~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~ 228 (881)
+-++|++-|.|| +.+||||+++++..|+++||.++.||+|.|+.|.|+||.||..+|++ .+++|
T Consensus 36 ~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~-------~g~t~------- 99 (411)
T TIGR03447 36 EAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAER-------DGVDW------- 99 (411)
T ss_pred cceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHH-------cCCCH-------
Confidence 356888889999 89999999999999999999999999999999999999999999974 46778
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce------ecCCceeceeeeEeeecCCCCCcccccccccCCce
Q 002784 229 AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLG 302 (881)
Q Consensus 229 ~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~~ 302 (881)
.++++++.+.++++|++||+. ..+..++|+++ ....+ +++|+++. + +... ..++|
T Consensus 100 ~ela~~y~~~f~~d~~~Lni~-~~d~~~RaTe~-i~~ii~~i~~L~~kG~aY~----~----~~~~---------~~~VY 160 (411)
T TIGR03447 100 RELGTSQIDLFREDMEALRVL-PPRDYIGAVES-IDEVIEMVEKLLAAGAAYE----V----EGPE---------YPDVY 160 (411)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-CCCcccCCCCC-HHHHHHHHHHHHHCCCEEe----c----CCCC---------cCcEE
Confidence 678999999999999999985 22367788877 23322 56666432 1 0000 00122
Q ss_pred EEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEE
Q 002784 303 LAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVI 382 (881)
Q Consensus 303 l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i 382 (881)
+-|-.. ..|... +...++.+...
T Consensus 161 Fdv~~~----------------~~YG~L----------------------------------s~~~~~~~~~~------- 183 (411)
T TIGR03447 161 FSIEAT----------------EQFGYE----------------------------------SGYDRATMLEL------- 183 (411)
T ss_pred Eeccch----------------hccccc----------------------------------cCCCHHHHHhh-------
Confidence 211110 012100 00001111000
Q ss_pred EEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCC-CCChhHHHHHHHhCCCceeccCCCCccccccc-c
Q 002784 383 KKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAP-GHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG-K 460 (881)
Q Consensus 383 ~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aP-aHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~-~ 460 (881)
.+ .+. |..+ .+ -.++.||.+|++.... .+ .+....| .
T Consensus 184 ---------~~--------~~~---------~~~~--------~~~K~~p~DFaLWK~~~~~--e~-----~w~spwG~G 222 (411)
T TIGR03447 184 ---------FA--------ERG---------GDPD--------RPGKRDPLDALLWRAAREG--EP-----SWDSPFGPG 222 (411)
T ss_pred ---------hc--------ccc---------cCcc--------cccCCCCcccceeCCCCCC--CC-----CccCCCCCC
Confidence 00 000 0000 01 2456677777654321 00 1111112 3
Q ss_pred CCCceeccchhHHHHHHHHhcCCccceeccccccccccC--------CCC-CeEEeeccccccchh--hHHHHHHHhhcc
Q 002784 461 FSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWR--------TKK-PTIFRATEQWFASVE--GFRQAAMDAIGQ 529 (881)
Q Consensus 461 ~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wR--------t~~-Pii~r~t~QWFi~~~--~lk~~al~~i~~ 529 (881)
..|.++ |+...+.+.|.+ ..-++..-..+.+||.-. +++ |..-.-.-..++.++ +|.++.-+.+.
T Consensus 223 RPGWHi--ECsam~~~~lg~-~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~- 298 (411)
T TIGR03447 223 RPGWHI--ECSAIATNRLGA-GFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVF- 298 (411)
T ss_pred CChhHH--HHHHHHHHHcCC-ceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCC-
Confidence 567776 566666666654 334444455556665321 222 433333333455443 45554433322
Q ss_pred ccccCCCCCCC-CCCchHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHH
Q 002784 530 VKWVPPQEAPG-YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYA 608 (881)
Q Consensus 530 v~~~P~~~~~~-yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~i 608 (881)
|..+.+. |++|++|||++++.|.++++|+++.|+++.+.++||++++..+ . . .
T Consensus 299 ----~~dl~~~g~dp~~lRl~lls~~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~----~------~------~------ 352 (411)
T TIGR03447 299 ----VSKLRAAGVDPAAIRLGLLAGHYRQDRDWTDAVLAEAEARLARWRAALAAT----D------A------P------ 352 (411)
T ss_pred ----HHHHHhcCCCcccEEEEEecCCCCCCCccCHHHHHHHHHHHHHHHHHHhhc----c------c------c------
Confidence 2223333 7778999999999999999999999999999999999887531 1 0 0
Q ss_pred HHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHH
Q 002784 609 LFQLENIVKNIRESYE-SYQFFKIFQIIQRFII 640 (881)
Q Consensus 609 l~~l~~li~~v~~~ye-~y~f~~a~~~i~~F~~ 640 (881)
.+..+...+.++++ ++++..|+..|++++.
T Consensus 353 --~~~~~~~~~~~al~dDln~p~a~~~l~~~~~ 383 (411)
T TIGR03447 353 --DATDLIARLRQHLANDLDTPAALAAVDNWAA 383 (411)
T ss_pred --hHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 12344566667776 7999999999998874
No 54
>PLN02946 cysteine-tRNA ligase
Probab=99.78 E-value=3.2e-18 Score=198.59 Aligned_cols=340 Identities=14% Similarity=0.122 Sum_probs=214.0
Q ss_pred ceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHH
Q 002784 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAK 230 (881)
Q Consensus 151 ~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~ 230 (881)
..|+. | |.+-|.+||||+++++..|++.||.++.||+|.|+.|+|.||.+|..+|.+ .+++| .+
T Consensus 82 ~~Y~C-G-pTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~-------~g~~~-------~e 145 (557)
T PLN02946 82 GMYVC-G-VTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANE-------LGEDP-------IS 145 (557)
T ss_pred eEEEe-C-CccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHH-------cCCCH-------HH
Confidence 45554 3 567799999999999999999999999999999999999999999999974 46778 78
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCcccccccccCCceE
Q 002784 231 FAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGL 303 (881)
Q Consensus 231 ~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~~l 303 (881)
+++++++.+.++|++|||. ...+.|...+|...+ +++|+.+...+- +|+
T Consensus 146 la~~y~~~f~~d~~~LnI~---~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~---------------------VYF 201 (557)
T PLN02946 146 LSRRYCEEFLSDMAYLHCL---PPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGD---------------------VYF 201 (557)
T ss_pred HHHHHHHHHHHHHHHCCCC---CCCeecCcchhHHHHHHHHHHHHHCCCEEEECCe---------------------EEE
Confidence 8999999999999999996 245677777777654 667775432211 111
Q ss_pred EEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEE
Q 002784 304 AVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIK 383 (881)
Q Consensus 304 ~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~ 383 (881)
-|- ..-+|.
T Consensus 202 dv~----------------~f~~YG------------------------------------------------------- 210 (557)
T PLN02946 202 SVD----------------KFPEYG------------------------------------------------------- 210 (557)
T ss_pred ecC----------------cchhhh-------------------------------------------------------
Confidence 100 000121
Q ss_pred EecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccc-cCC
Q 002784 384 KTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG-KFS 462 (881)
Q Consensus 384 ~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~-~~~ 462 (881)
.|.+.....- ..+.-|..+. =-.++.||.+|++..- .+ -.+....| ...
T Consensus 211 ------~Ls~~~l~~l---------~~g~rv~~~~--------~K~np~DFaLWK~~k~------ge-~~W~SPWG~GRP 260 (557)
T PLN02946 211 ------KLSGRKLEDN---------RAGERVAVDS--------RKKNPADFALWKAAKE------GE-PFWDSPWGPGRP 260 (557)
T ss_pred ------hcCCCChhHh---------hcCCCCCccc--------ccCCccccceeccCCC------CC-CCccCCCCCCCC
Confidence 1111100000 0000011000 1346677877775431 00 01222222 467
Q ss_pred CceeccchhHHHHHHHHhcCCccceeccccccccccC--------CCCCeEEeecccccc------chhhHHHHHHHhhc
Q 002784 463 GLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWR--------TKKPTIFRATEQWFA------SVEGFRQAAMDAIG 528 (881)
Q Consensus 463 G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wR--------t~~Pii~r~t~QWFi------~~~~lk~~al~~i~ 528 (881)
|.++ |+.....++|.+ ..-++.....+.+||.-. ++.+.. .-|.. +-.+|+++.-+.+.
T Consensus 261 GWHI--ECSaMs~~~lG~-~~DIH~GG~DL~FPHHENEiAQsea~~g~~~a----~yW~H~G~v~~~G~KMSKSlGN~it 333 (557)
T PLN02946 261 GWHI--ECSAMSAAYLGH-SFDIHGGGMDLVFPHHENEIAQSCAACCDSNI----SYWIHNGFVTVDSEKMSKSLGNFFT 333 (557)
T ss_pred cHHH--HHHHHHHHHcCC-CeeEeccccccCCCcccchHHHHHHHhCCCCC----ceeeEeeEEEeCCCCcCCcCCCcCC
Confidence 8887 677777887765 455666777788887532 333321 11221 11244444322221
Q ss_pred cccccCCCCCCCCCCchHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHH
Q 002784 529 QVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYA 608 (881)
Q Consensus 529 ~v~~~P~~~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~i 608 (881)
+...+.+||+|++|||++++.|.++++|+++.+..+...+.+|+++++.+...+..-. ....... .+.-+
T Consensus 334 -----l~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~--~~~~~~~---~~~~~ 403 (557)
T PLN02946 334 -----IRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHD--STFEKDS---VPPDT 403 (557)
T ss_pred -----HHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccccccc---cchhh
Confidence 2224568999999999999999999999999999999889999998877644332100 0000000 11112
Q ss_pred HHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHhhHHHHHH
Q 002784 609 LFQLENIVKNIRESYE-SYQFFKIFQIIQRFIIVDLSNFYFDV 650 (881)
Q Consensus 609 l~~l~~li~~v~~~ye-~y~f~~a~~~i~~F~~~~ls~~Yl~~ 650 (881)
...+..+.+.+.++|+ ++++..|+..|++++.. .|.|++.
T Consensus 404 ~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~--~N~~~~~ 444 (557)
T PLN02946 404 LNCINKFHDEFVTSMSDDLHTPVALAALSEPLKT--INDLLHT 444 (557)
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH--HHHHhhh
Confidence 3355667788888886 79999999999999854 5666653
No 55
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.78 E-value=1.2e-18 Score=194.92 Aligned_cols=333 Identities=13% Similarity=0.075 Sum_probs=204.9
Q ss_pred CceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHH
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAA 229 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~ 229 (881)
-++|++-|.|| |.+||||+++++..|++.||.+++|++|.|+.|.|.||.||+.+|++ .+++| +
T Consensus 10 v~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~-------~G~~~-------~ 73 (384)
T PRK12418 10 ATMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAAR-------DGVDW-------R 73 (384)
T ss_pred eEEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHH-------cCCCH-------H
Confidence 36888888899 99999999999999999999999999999999999999999999984 56788 7
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce------ecCCceeceeeeEeeecCCCCCcccccccccCCceE
Q 002784 230 KFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGL 303 (881)
Q Consensus 230 ~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~~l 303 (881)
++|+++.+.+.++|++|||. ..+...+|+++ .+..| .++|+++.... .+ ..++|+
T Consensus 74 e~a~~~~~~f~~d~~~Lni~-~~~~~~raTe~-i~~~~~~i~~L~~kG~aY~~~~-------~~----------~~~VYF 134 (384)
T PRK12418 74 DLAEREIALFREDMEALRVL-PPRDYVGAVES-IPEVVELVEKLLASGAAYVVDD-------EE----------YPDVYF 134 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCCccccCCCC-HHHHHHHHHHHHHCCCEEEeCC-------CC----------CccEEE
Confidence 88999999999999999973 33467888886 33333 55666432110 00 001222
Q ss_pred EEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEE
Q 002784 304 AVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIK 383 (881)
Q Consensus 304 ~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~ 383 (881)
-|... -.|... +...++.+...
T Consensus 135 dv~~~----------------~~YG~l----------------------------------s~~~~~~~~~~-------- 156 (384)
T PRK12418 135 SVDAT----------------PQFGYE----------------------------------SGYDRATMLEL-------- 156 (384)
T ss_pred ecCch----------------hhcccc----------------------------------cCCCHHHHHhh--------
Confidence 11110 011100 00001111000
Q ss_pred EecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccc-cCC
Q 002784 384 KTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG-KFS 462 (881)
Q Consensus 384 ~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~-~~~ 462 (881)
.+.....+ +++ =-.++.||.+|+... |- + -.+....| ...
T Consensus 157 --------~~~~~~~~-----------~~~-------------~K~~p~DFaLWK~~~-~~-----~-~~w~spwG~GRP 197 (384)
T PRK12418 157 --------FAERGGDP-----------DRP-------------GKRDPLDALLWRAAR-PG-----E-PSWPSPFGPGRP 197 (384)
T ss_pred --------hcccccCc-----------ccc-------------cCCCcccceeeccCC-CC-----C-CcccCCCCCCCC
Confidence 00000000 000 024566776665431 10 0 01111112 456
Q ss_pred CceeccchhHHHHHHHHhcCCccceeccccccccccC--------CCC-CeEEeeccccccchh--hHHHHHHHhhcccc
Q 002784 463 GLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWR--------TKK-PTIFRATEQWFASVE--GFRQAAMDAIGQVK 531 (881)
Q Consensus 463 G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wR--------t~~-Pii~r~t~QWFi~~~--~lk~~al~~i~~v~ 531 (881)
|.++ |+...+.+.|.+ .+-++..-..+.+||.-. +++ |..-...-..++.++ +|+++.-+.+.
T Consensus 198 GWHi--ECsam~~~~lg~-~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~--- 271 (384)
T PRK12418 198 GWHI--ECSAIALNRLGS-GFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVF--- 271 (384)
T ss_pred hhHH--HHHHHHHHHcCC-CcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCC---
Confidence 7776 677677777654 344555555666666322 222 433333333444443 45555443332
Q ss_pred ccCCCCCCCCCCc--hHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHH
Q 002784 532 WVPPQEAPGYGAD--VLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYAL 609 (881)
Q Consensus 532 ~~P~~~~~~yGaD--~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il 609 (881)
|.. +.+||+| ++|||++++.|.++++|+++.++++.+.+++++|+++.. . . .
T Consensus 272 --~~e-ll~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~----~-----------~-~------- 325 (384)
T PRK12418 272 --VSR-LRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLARWRAAAALP----A-----------G-P------- 325 (384)
T ss_pred --HHH-HHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHHHHHHHhcc----c-----------c-c-------
Confidence 222 2356777 899999999999999999999999999999999887431 0 0 0
Q ss_pred HHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHhhHHHHH
Q 002784 610 FQLENIVKNIRESYE-SYQFFKIFQIIQRFIIVDLSNFYFD 649 (881)
Q Consensus 610 ~~l~~li~~v~~~ye-~y~f~~a~~~i~~F~~~~ls~~Yl~ 649 (881)
.+.++.+.+.++++ ++++..|+..|++++.. .|.|..
T Consensus 326 -~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~--~n~~~~ 363 (384)
T PRK12418 326 -DAADVVARVRAALADDLDTPGALAAVDGWATD--ALEGGG 363 (384)
T ss_pred -hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH--HHhccC
Confidence 23345677888886 69999999999999854 565554
No 56
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.75 E-value=1.7e-17 Score=193.53 Aligned_cols=319 Identities=13% Similarity=0.123 Sum_probs=200.2
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHH
Q 002784 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKA 238 (881)
Q Consensus 159 PYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~ 238 (881)
|.+-+.+||||+++++..|++.||.++.||+|.|+.|.|.||-+|..+|.+ .+++| .++|+++++.
T Consensus 256 PTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e-------~G~sp-------~ela~~y~~~ 321 (699)
T PRK14535 256 MTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAE-------NGETI-------GELTARFIQA 321 (699)
T ss_pred CcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHH-------cCCCH-------HHHHHHHHHH
Confidence 456688999999999999999999999999999999999999999999974 46788 7889999999
Q ss_pred HHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCcccccccccCCceEEEecCccc
Q 002784 239 QMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPW 311 (881)
Q Consensus 239 ~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~~l~iwTTtPw 311 (881)
+.++|++|||..+ .+.|...+|...+ .++|+.|...| .++|+-|-.
T Consensus 322 F~~d~~~LnI~~p---~~~praTeHI~~ii~lI~~LidkG~AYe~~~--------------------gsVYFdV~~---- 374 (699)
T PRK14535 322 MHEDADALGVLRP---DIEPKATENIPQMIAMIETLIQNGKAYPAAN--------------------GDVYYAVRE---- 374 (699)
T ss_pred HHHHHHHcCCCCC---cEeeCccchHHHHHHHHHHHHHCCCEEEeCC--------------------CCEEEeccc----
Confidence 9999999999877 3566666776653 56777543211 001111000
Q ss_pred cccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceEEEEecccccc
Q 002784 312 TVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDL 391 (881)
Q Consensus 312 Tl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~i~~~~~G~~L 391 (881)
--+|. .|
T Consensus 375 ------------f~~YG-------------------------------------------------------------~L 381 (699)
T PRK14535 375 ------------FAAYG-------------------------------------------------------------QL 381 (699)
T ss_pred ------------ccccc-------------------------------------------------------------cc
Confidence 00121 01
Q ss_pred cCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHhCCCceeccCCCCccccccc-cCCCceeccch
Q 002784 392 ENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG-KFSGLDVLGDG 470 (881)
Q Consensus 392 ~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~-~~~G~~v~~~a 470 (881)
.|..... + ..+.-|..+. =-+++.||.+|+...-. + -.+....| ...|.++ |+
T Consensus 382 S~~~~~~------l---~~g~rve~d~--------~Krnp~DFaLWK~sk~G------e-p~W~SPWG~GRPGWHI--EC 435 (699)
T PRK14535 382 SGKSLDD------L---RAGERVEVDG--------FKRDPLDFVLWKAAKAG------E-PAWESPWGNGRPGWHI--EC 435 (699)
T ss_pred cCCChHH------h---cCCCcccccc--------ccCCccccceeccCCCC------C-CCccCCCCCCCCchHH--HH
Confidence 1100000 0 0011111110 13567788888764310 0 01111112 4567777 67
Q ss_pred hHHHHHHHHhcCCccceeccccccccccC--------CCCCe-------EEe-----ecccccc------chhhHHHHHH
Q 002784 471 NVAVVKYLDEQMSLIMEEPYEHKYPYDWR--------TKKPT-------IFR-----ATEQWFA------SVEGFRQAAM 524 (881)
Q Consensus 471 ~~~ii~~L~~~g~l~~~~~~~h~yp~~wR--------t~~Pi-------i~r-----~t~QWFi------~~~~lk~~al 524 (881)
...+.+.|.+ ..-++.....+.+||.-. ++.++ +.- ...-|.- +-++|.++.-
T Consensus 436 SAMs~~~LG~-~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLG 514 (699)
T PRK14535 436 SAMSENLFGD-TFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLG 514 (699)
T ss_pred HHHHHHHcCC-cceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCC
Confidence 7777777754 345666677788887532 23311 000 1111321 2224444332
Q ss_pred HhhccccccCCCCCCCCCCchHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHh
Q 002784 525 DAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMI 604 (881)
Q Consensus 525 ~~i~~v~~~P~~~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~ 604 (881)
+.+. |...+++||+|++|||++++.|.++++|+++.++++...+++++++++-+.. . . . .
T Consensus 515 N~it-----~~dlLe~ygpdalRl~lLsshYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~----~---~---~-~---- 574 (699)
T PRK14535 515 NFFT-----IREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPA----A---E---F-M---- 574 (699)
T ss_pred CcCC-----HHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhh----c---c---c-h----
Confidence 2221 3335568999999999999999999999999999999999999888764310 0 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHH
Q 002784 605 DQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFIIV 641 (881)
Q Consensus 605 Dr~il~~l~~li~~v~~~ye-~y~f~~a~~~i~~F~~~ 641 (881)
....+..+.+.+.++++ ++++..|+..|++++..
T Consensus 575 ---~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lvk~ 609 (699)
T PRK14535 575 ---LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGE 609 (699)
T ss_pred ---hhhhHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 01234456677888886 79999999999988753
No 57
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.74 E-value=3.8e-17 Score=187.96 Aligned_cols=338 Identities=14% Similarity=0.125 Sum_probs=207.9
Q ss_pred CCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeecc----------CcCCCCcHHHHHHHHhcccccccCCChHHHHHH
Q 002784 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP----------GWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (881)
Q Consensus 158 PPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~p----------GwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~ 227 (881)
=|+|++.+||||+++++..|++.||.++.||+|.|+. |.|+||-+|..+|.+ .+++|
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~-------~g~~~------ 96 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQE-------HGKSV------ 96 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHH-------cCCCH------
Confidence 4789999999999999999999999999999999996 999999999988863 46778
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCcccccccccCC
Q 002784 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPD 300 (881)
Q Consensus 228 ~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~ 300 (881)
.++|+++++.++++|++|||..+ ..+ |..++|...+ +++|+++...+..+..+...
T Consensus 97 -~e~a~~~~~~f~~d~~~Lni~~~--~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~------------- 159 (490)
T PRK14536 97 -LEIAAHYTAAFFRDTARLNIERP--SIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTF------------- 159 (490)
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCC--cee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcc-------------
Confidence 78899999999999999999765 333 5557776653 56777544322111111100
Q ss_pred ceEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCce
Q 002784 301 LGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKL 380 (881)
Q Consensus 301 ~~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~ 380 (881)
-.|...
T Consensus 160 ------------------------~~YG~L-------------------------------------------------- 165 (490)
T PRK14536 160 ------------------------PSYGSL-------------------------------------------------- 165 (490)
T ss_pred ------------------------cchhhh--------------------------------------------------
Confidence 012100
Q ss_pred EEEEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHHh-CCCceeccCCCCccccccc
Q 002784 381 VIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKY-GLPILSPVDDEGKFTEEAG 459 (881)
Q Consensus 381 ~i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~-gL~~~~~vd~~G~~~~~~~ 459 (881)
.|.++... ..+..|..+. =-+++.||.+|+.. +++-..+ .+....|
T Consensus 166 ------s~~~~~~l--------------~~g~~v~~~~--------~K~np~DFaLWK~~~~~~~~~~-----~W~SpWG 212 (490)
T PRK14536 166 ------ASAAVEDL--------------QAGARIEHDT--------NKRNPHDFVLWFTRSKFENHAL-----TWDSPWG 212 (490)
T ss_pred ------cCCCHHHh--------------hcCCcCCCCC--------CCCCchhchhcccccCCCCCCC-----cccCCCC
Confidence 00000000 0011111100 13567788888653 2221000 1111112
Q ss_pred -cCCCceeccchhHHHHHHHHhcCCccceeccccccccccC--------CCCCeEEeeccccccchh--hHHHHHHHhhc
Q 002784 460 -KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWR--------TKKPTIFRATEQWFASVE--GFRQAAMDAIG 528 (881)
Q Consensus 460 -~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wR--------t~~Pii~r~t~QWFi~~~--~lk~~al~~i~ 528 (881)
...|.++ ++.....++|.+ ..-++.....+.+||.-. ++.|..-.-.-+.|+.++ +|+++.-+.+.
T Consensus 213 ~GRPGWHI--ECsaMs~~~lg~-~~DIH~GG~DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~it 289 (490)
T PRK14536 213 RGYPGWHI--ECSAMSMKYLGE-QCDIHIGGVDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLT 289 (490)
T ss_pred CCCCChHH--HHHHHHHHHcCC-ceeEEeccccCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCccc
Confidence 4557777 677788888865 456666666777887421 455654443444555443 44444332221
Q ss_pred cccccCCCCCCC-CCCchHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCC-CCCC-HhH
Q 002784 529 QVKWVPPQEAPG-YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISY-DDLP-MID 605 (881)
Q Consensus 529 ~v~~~P~~~~~~-yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~-~~l~-~~D 605 (881)
+ ...+.+ |++|++|||++++.|.++++|+++.|.++.+.+.+|.|++.-+...+....+...... .... ..+
T Consensus 290 ----l-~dll~~g~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (490)
T PRK14536 290 ----L-SSLQEKGFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVA 364 (490)
T ss_pred ----H-HHHHhcCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 1 123345 9999999999999999999999999999999999999988665322211100000000 0000 000
Q ss_pred HHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHH
Q 002784 606 QYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFII 640 (881)
Q Consensus 606 r~il~~l~~li~~v~~~ye-~y~f~~a~~~i~~F~~ 640 (881)
.-....+..+.+.+.++|+ ++++..|+..|++++.
T Consensus 365 ~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~ 400 (490)
T PRK14536 365 ESRASESELLLTDFRAALEDDFSTPKALSELQKLVK 400 (490)
T ss_pred chhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 0011235566778888886 7999999999998874
No 58
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.72 E-value=1.2e-15 Score=179.47 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=80.4
Q ss_pred CCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHH
Q 002784 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (881)
Q Consensus 148 ~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~ 227 (881)
.+++++|....|||||++||||+++.++.|+++|+.++.||+|.++.|+|++|.+|...+.... ..
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~--------------~~ 174 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLE--------------LL 174 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHH--------------HH
Confidence 3467999999999999999999999999999999999999999999999999999998776421 12
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc
Q 002784 228 AAKFAKATVKAQMASFKRYGVWAD 251 (881)
Q Consensus 228 ~~~~a~~~i~~~~~~f~rlGi~~D 251 (881)
.+.+++.+++.+++++++|||.+|
T Consensus 175 ~~~~~~~~~~~~~~~l~~LgI~~D 198 (507)
T PRK01611 175 WRKAVDISLDEIKEDLDRLGVHFD 198 (507)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeee
Confidence 367889999999999999999887
No 59
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.71 E-value=2.3e-16 Score=153.17 Aligned_cols=135 Identities=24% Similarity=0.489 Sum_probs=111.7
Q ss_pred cChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 002784 561 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFII 640 (881)
Q Consensus 561 ~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~ 640 (881)
|+++.++.+.++++|+||+.+|+.++..++++... +.......|+++++.++++++++.++|++|+|++|++.+++++.
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~ 79 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEE-DPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFW 79 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCcccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 57788888999999999999998664443322100 22345678999999999999999999999999999999999987
Q ss_pred HHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhC
Q 002784 641 VDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 698 (881)
Q Consensus 641 ~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L 698 (881)
.+++|+|++..+||... .+..+..+...++.++++.++++|+||+||+||++|+.|
T Consensus 80 ~~~~N~Yi~~~~pW~~~--~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 80 NDFCDWYLELVKPRLYG--EDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHhHHHHHHhhHHHcC--CChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 66999999999997653 233345668889999999999999999999999999864
No 60
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.66 E-value=1.5e-15 Score=143.14 Aligned_cols=116 Identities=21% Similarity=0.336 Sum_probs=94.0
Q ss_pred cChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHH-HHHH
Q 002784 561 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQII-QRFI 639 (881)
Q Consensus 561 ~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i-~~F~ 639 (881)
|+.+.+..+.++++++++.++...+ +..+ ...+...|+|+++++++++++++++|++|+|++|++.+ ++|.
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~---~~~~-----~~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~ 72 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIE---TEGE-----LEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQ 72 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh---ccCC-----ccccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566677788888888888764222 1111 13456799999999999999999999999999999997 6654
Q ss_pred HHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhC
Q 002784 640 IVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 698 (881)
Q Consensus 640 ~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L 698 (881)
+ ++++|++..|++ .+++++.++++.++++|+||+||+|||+|+.|
T Consensus 73 -~-~~~~Y~~~~~~~------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 73 -N-DLDWYRERGGAG------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred -H-HHHHHHHHhCcc------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 4 689999998885 24568999999999999999999999999864
No 61
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.65 E-value=4.4e-16 Score=162.24 Aligned_cols=94 Identities=21% Similarity=0.202 Sum_probs=83.0
Q ss_pred CCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHH
Q 002784 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (881)
Q Consensus 148 ~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~ 227 (881)
++.+++++.|.|| |.+||||++++++.|+++||+||+|++|+|+.|||.||.||+.+|++ .+++|
T Consensus 19 ~~~~~y~~gpt~y--~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~-------~g~~p------ 83 (213)
T cd00672 19 GLVTMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE-------EGLSW------ 83 (213)
T ss_pred CCceEEEeCCccC--CCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHH-------cCCCH------
Confidence 5568999888888 78999999999999999999999999999999999999999999985 35677
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCccC
Q 002784 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLT 258 (881)
Q Consensus 228 ~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T 258 (881)
++|++++.+.++++|++|||+.. +.+.+|
T Consensus 84 -~e~~~~~~~~f~~~~~~l~i~~~-d~~~rt 112 (213)
T cd00672 84 -KEVADYYTKEFFEDMKALNVLPP-DVVPRV 112 (213)
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCC-Ccceee
Confidence 78999999999999999999762 355566
No 62
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.62 E-value=3.2e-15 Score=143.11 Aligned_cols=96 Identities=21% Similarity=0.272 Sum_probs=83.1
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHH
Q 002784 601 LPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIV 680 (881)
Q Consensus 601 l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~ 680 (881)
+...|+|+++++++++++++++|++|+|++|++.+++|+ +++|+|++..||+.+.+..+...++.+..++.++++.++
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~ 111 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILA 111 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999998 479999999999776643233334556677888899999
Q ss_pred HHhhcccchhHHHHHHhC
Q 002784 681 RVIAPILPHLAEDVWQNL 698 (881)
Q Consensus 681 ~lLaPilP~~aEEiw~~L 698 (881)
++|+|||||+|||+|+.|
T Consensus 112 ~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 112 ILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhcCCCChHHHHHHHhC
Confidence 999999999999999865
No 63
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.57 E-value=4.8e-14 Score=161.72 Aligned_cols=334 Identities=13% Similarity=0.146 Sum_probs=195.1
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHhCCCeeee---------ccCc-CCCCcHHHHHHHHhcccccccCCChHHHHHHH
Q 002784 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRY---------VPGW-DCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (881)
Q Consensus 159 PYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~---------~pGw-D~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~ 228 (881)
|.+-..+||||+++++..|++.||.+++||+|.| +.|. |+||-+|..+|.+ .+++|
T Consensus 29 pTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~-------~g~~~------- 94 (481)
T PRK14534 29 PTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARE-------RGLTV------- 94 (481)
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHH-------cCCCH-------
Confidence 4566889999999999999999999999999999 7888 8888899998873 46778
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCccCCccchhhce-------ecCCceeceeeeEeeecCCCCCcccccccccCCc
Q 002784 229 AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDL 301 (881)
Q Consensus 229 ~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siy~~f~~~~~~~~~~~~l~~~~~~~ 301 (881)
.++++++++.+.++|++|||..| ..+.| .++|...+ .++|+++.... ++
T Consensus 95 ~e~a~~~~~~f~~d~~~Lni~~~--~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~---------------------~v 150 (481)
T PRK14534 95 YEISRFFTEAFFDDCKKLNIVYP--DKVLV-ASEYIPIMIEVVKVLEENGFTYFVNG---------------------NV 150 (481)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC--ceecC-ccchHHHHHHHHHHHHHCCCEEEECC---------------------eE
Confidence 78899999999999999999766 45555 35555543 56666432110 11
Q ss_pred eEEEecCccccccccceeeeCCCCcEEEEEEcccccCCCCCcccCCCCCCCcccCCCceEEEEeccchHHHHHHhCCceE
Q 002784 302 GLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLV 381 (881)
Q Consensus 302 ~l~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iva~~~~~~l~~~~~~~~~ 381 (881)
|+-+-. --.|..
T Consensus 151 yFdv~~----------------~~~YG~---------------------------------------------------- 162 (481)
T PRK14534 151 YFDTSC----------------FKSYGQ---------------------------------------------------- 162 (481)
T ss_pred EEeccc----------------ccchhh----------------------------------------------------
Confidence 111000 001110
Q ss_pred EEEecccccccCCEeecCCCCCCcceeecCccccccCCCCceecCCCCChhHHHHHHH-hCCCceeccCCCCccccccc-
Q 002784 382 IKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLK-YGLPILSPVDDEGKFTEEAG- 459 (881)
Q Consensus 382 i~~~~~G~~L~g~~~~~Pl~~~~~pi~i~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~k-~gL~~~~~vd~~G~~~~~~~- 459 (881)
+.|.++..+.+. .+ .-|..+. =-.++.||.+|+. .++..-.+ .+....|
T Consensus 163 ----ls~~~l~~l~~~---~~---------~~v~~~~--------~K~np~DFaLWK~~~~~~~~~~-----~w~spWG~ 213 (481)
T PRK14534 163 ----MAGINLNDFKDM---SV---------SRVEIDK--------SKRNKSDFVLWFTNSKFKDQEM-----KWDSPWGF 213 (481)
T ss_pred ----hcCCCHHHHhhh---cc---------CcCCccc--------CCCCcccchhcCcCCcCCCCCC-----eecCCCCC
Confidence 001111110000 00 0011100 1356778887763 22221100 1111112
Q ss_pred cCCCceeccchhHHHHHHHHhcCCccceeccccccccccC--------CCCCeEEeeccccccch--hhHHHHHHHhhcc
Q 002784 460 KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWR--------TKKPTIFRATEQWFASV--EGFRQAAMDAIGQ 529 (881)
Q Consensus 460 ~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wR--------t~~Pii~r~t~QWFi~~--~~lk~~al~~i~~ 529 (881)
.+.|.++ |+.....+.|.+ ..-++-....+.+||.-. ++.|....-.-+=|+.+ ++|+++.-+.+.
T Consensus 214 GrPgWHi--ECsam~~~~lg~-~~DIH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~- 289 (481)
T PRK14534 214 GYPSWHL--ECAAMNLEYFKS-TLDIHLGGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFIT- 289 (481)
T ss_pred cCCcHHH--HHHHHHHHHcCC-cceEEecccccCCCcchhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCCccc-
Confidence 4667777 566666777753 345565666677777421 34443222111112222 344444332221
Q ss_pred ccccCCCCCC-CCCCchHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHH
Q 002784 530 VKWVPPQEAP-GYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYA 608 (881)
Q Consensus 530 v~~~P~~~~~-~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~i 608 (881)
+ ...++ .|+++++|||++++.|.++++|+++.|.++...+++|++.++-++..+...... ...... +...
T Consensus 290 ---l-~dll~~~~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~ 360 (481)
T PRK14534 290 ---I-KDLEDQGFSPLDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLN-LLNKDL----ENIE 360 (481)
T ss_pred ---H-HHHHhcCCChhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-cccccc----ccch
Confidence 1 11233 489999999999999999999999999999999999999887554333211000 000000 0000
Q ss_pred HHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHH
Q 002784 609 LFQLENIVKNIRESYE-SYQFFKIFQIIQRFII 640 (881)
Q Consensus 609 l~~l~~li~~v~~~ye-~y~f~~a~~~i~~F~~ 640 (881)
......+.+.+.++|+ ++++..|+..|++++.
T Consensus 361 ~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~k 393 (481)
T PRK14534 361 FSLEKEYYDSFLEKIAFDLNIPQGLALLWDIIK 393 (481)
T ss_pred hhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 0112344567777886 7999999999998874
No 64
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.54 E-value=7.4e-14 Score=131.31 Aligned_cols=117 Identities=19% Similarity=0.282 Sum_probs=94.1
Q ss_pred cChhHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 002784 561 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFII 640 (881)
Q Consensus 561 ~s~~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~ 640 (881)
|+++.++++.++++|++|+++...+.. .|.. +.+.+...|+|++++++++++++.++|++|+|++|++.+++|++
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~---~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~ 75 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL---AAPA--AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVN 75 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc---cccc--cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 567778889999999999987643321 1110 01245678999999999999999999999999999999999985
Q ss_pred HHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhC
Q 002784 641 VDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 698 (881)
Q Consensus 641 ~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPilP~~aEEiw~~L 698 (881)
. .|.|++..++ .+.++.++++.++++|+||+||+|||+|+.|
T Consensus 76 ~--~n~~~~~~~p--------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 76 A--LYKYKKKDAQ--------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred H--HHHhhccccc--------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 3 6778664322 5678999999999999999999999999864
No 65
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.37 E-value=1.5e-11 Score=146.44 Aligned_cols=143 Identities=9% Similarity=0.069 Sum_probs=93.3
Q ss_pred CCCCCCCchHhHHhhhcCCCCceecChhHHHHH-HHHHHHHhhHHHHHHhcccCCCCCC----ccCCCCCCHhHHHHHHH
Q 002784 537 EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQM-SDIYRKLRGTLRYLLGNLHDWRVGN----SISYDDLPMIDQYALFQ 611 (881)
Q Consensus 537 ~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~-~~~~~Kl~Nt~rf~l~nl~~f~~~~----~~~~~~l~~~Dr~il~~ 611 (881)
..+.+|+|++||++++....+|+.|+.+.+.+. .+...-|.|+.-.+.+.+....... ..+...+.+.++.++..
T Consensus 409 ~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~ 488 (566)
T TIGR00456 409 VADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKL 488 (566)
T ss_pred HHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHH
Confidence 456899999999999888889999999865322 2344445555544444333221110 00111235668889999
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCCh---HHHHHHHHHHHHHHHHHHHHhh
Q 002784 612 LENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTS---FTRRSCQTVLSAHLLSIVRVIA 684 (881)
Q Consensus 612 l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~---~~r~s~q~vL~~il~~l~~lLa 684 (881)
+..+.+.+.+++++|+++.+++.+++++. ..|.|++.. +.... .+. ..|.........+|...+.||.
T Consensus 489 l~~~~~~v~~a~~~~~p~~~~~~l~~La~--~~N~yy~~~--~Vl~~-~~~~~~~~RL~L~~a~~~vl~~gL~lLG 559 (566)
T TIGR00456 489 LLQFPDVLEEAAEELEPHVLTNYLYELAS--LFSSFYKAC--PVLDA-ENENLAAARLALLKATRQTLKNGLQLLG 559 (566)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHH--HHHHHHhcC--ccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999884 367787765 22222 222 2344444445566666666664
No 66
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.35 E-value=8.2e-13 Score=146.86 Aligned_cols=103 Identities=18% Similarity=0.314 Sum_probs=81.6
Q ss_pred CCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCC--------CcHHHHHHHHhcccccccCCC
Q 002784 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCH--------GLPIELKVLQSLDEDAKKDLT 220 (881)
Q Consensus 149 ~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~h--------GLPiE~~a~k~l~~~~~~~~~ 220 (881)
+++|++++|++ |||.+||||++..+..|+++||.|++|++|.|+.|||+| |+|-+ +++.++..-. . -
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~~~G~pi~-~-i 92 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQYIGMPLS-S-V 92 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHHhcCccch-h-c
Confidence 45799999885 999999999999999999999999999999999999999 57665 4455443211 1 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCc
Q 002784 221 PSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLD 260 (881)
Q Consensus 221 p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~d 260 (881)
|..+ ..|..|++++.+.+++.|++||+++| .|+|++
T Consensus 93 p~p~-g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~ 128 (353)
T cd00674 93 PDPF-GCCESYAEHFERPFEESLEKLGIEVE---FISQSQ 128 (353)
T ss_pred hhhc-CCCHHHHHHHHHHHHHHHHHcCCeee---eeecCC
Confidence 2222 22468999999999999999999888 356655
No 67
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.35 E-value=1.8e-12 Score=135.66 Aligned_cols=93 Identities=24% Similarity=0.271 Sum_probs=80.8
Q ss_pred eEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHH
Q 002784 152 FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKF 231 (881)
Q Consensus 152 f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~ 231 (881)
.+|--.+|||||.+||||++|.++.|+++||.++.|++|.+..|+|.||.+|+..+.+. + .++++
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-~--------------~~~~~ 66 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-E--------------KWRKL 66 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH-H--------------HHHHH
Confidence 45666899999999999999999999999999999999999999999999999998642 1 15889
Q ss_pred HHHHHHHHHHHHHHhccccccCCCccCCcc
Q 002784 232 AKATVKAQMASFKRYGVWADWNNPYLTLDP 261 (881)
Q Consensus 232 a~~~i~~~~~~f~rlGi~~DW~~~y~T~dp 261 (881)
++.+++.+++.+++|||.+| ..++|.+.
T Consensus 67 ~~~~~~~~~~~~~~L~i~~d--~~~~es~~ 94 (212)
T cd00671 67 VEESIKADLETYGRLDVRFD--VWFGESSY 94 (212)
T ss_pred HHHHHHHHHHHHHHhCCcCc--eecchhhh
Confidence 99999999999999999877 34455553
No 68
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.27 E-value=6.3e-11 Score=110.78 Aligned_cols=116 Identities=23% Similarity=0.298 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHh
Q 002784 564 QVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDL 643 (881)
Q Consensus 564 ~~l~~~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~l 643 (881)
+.++++.++.+++|++++|+.+...+..+. .........|+|++++++.++++++++|++|+|++|++.+++|++. +
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~-~ 78 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPK--WDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNE-L 78 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--cChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-c
Confidence 456778889999999999976654432221 0011235689999999999999999999999999999999999865 4
Q ss_pred hHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhhccc
Q 002784 644 SNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPIL 687 (881)
Q Consensus 644 s~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLaPil 687 (881)
|+|++..|||.+.+. .+..+..++.+++..++++|+||+
T Consensus 79 -n~y~~~~~pw~~~~~----~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 79 -NWYLDELKPALQTEE----LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred -cHHHHHhhHHHcCch----hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999988652 234567789999999999999996
No 69
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.6e-10 Score=130.29 Aligned_cols=182 Identities=19% Similarity=0.226 Sum_probs=117.0
Q ss_pred CCChhHHHHHHHhCCCceeccCCCCccccccc-cCCCceeccchhHHHHHHHHhcCCccceeccccccccccC-------
Q 002784 428 GHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG-KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWR------- 499 (881)
Q Consensus 428 aHg~~Dy~~~~k~gL~~~~~vd~~G~~~~~~~-~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wR------- 499 (881)
-.++.||.+|+...-. +. .+....| .-.|.++ |+...+.++|.+. +-+|-......+||.-.
T Consensus 176 Krnp~DFvLWK~sk~g------Ep-~W~SPWG~GRPGWHI--ECSaM~~~~LG~~-~DIHgGG~DLiFPHHENEiAQsea 245 (464)
T COG0215 176 KRNPLDFVLWKAAKPG------EP-SWDSPWGKGRPGWHI--ECSAMSTKYLGET-FDIHGGGSDLIFPHHENEIAQSEA 245 (464)
T ss_pred cCCchhheeeccCCCC------CC-CCCCCCCCCCCchhH--HHHHHHHHHhCCC-cceecCcccccCCCcccHHHHHHh
Confidence 4577888888754210 00 0222222 4578888 7888888888763 44555566677777532
Q ss_pred -CC-CCeEEeeccccccch--hhHHHHHHHhhccccccCCCCCCCCCCchHhHHhhhcCCCCceecChhHHHHHHHHHHH
Q 002784 500 -TK-KPTIFRATEQWFASV--EGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRK 575 (881)
Q Consensus 500 -t~-~Pii~r~t~QWFi~~--~~lk~~al~~i~~v~~~P~~~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~K 575 (881)
++ +|..-.-.--=|+.+ ++|+++. .++-.+++ +..+|+..+|||+++++.|.+.++||++.|+++...+++
T Consensus 246 ~~g~~~~a~yWmH~G~l~i~geKMSKSL----GNfiti~d-~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~r 320 (464)
T COG0215 246 ATGVKPFAKYWMHNGFLNIDGEKMSKSL----GNFITVRD-LLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALER 320 (464)
T ss_pred hhCCCcceeEeEEcceeeecCcCccccc----CCeeEHHH-HHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHH
Confidence 33 331111001112223 3555444 32222332 456899999999999999999999999999999999999
Q ss_pred HhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHH
Q 002784 576 LRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFIIV 641 (881)
Q Consensus 576 l~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye-~y~f~~a~~~i~~F~~~ 641 (881)
|+|+++.+.....++. .. ...++..++.++++ +|++..|++.+++++..
T Consensus 321 l~~~~~~~~~~~~~~~---------~~--------~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~ 370 (464)
T COG0215 321 LYNALRRLRDLAGDAE---------LA--------DLKEFEARFREALDDDFNTPKALAVLFELAKE 370 (464)
T ss_pred HHHHHHHHHhhccccc---------cc--------hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 9999988653322211 01 44556666778886 79999999999988754
No 70
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.19 E-value=4.7e-11 Score=117.14 Aligned_cols=76 Identities=20% Similarity=0.154 Sum_probs=68.6
Q ss_pred ecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHH
Q 002784 155 HDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKA 234 (881)
Q Consensus 155 ~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~ 234 (881)
..+.|||||.+||||+++.++.|+++||.+++|++|.++.|+|.+|.+|...+.+. +.++ ++|++.
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~-------~~~~-------~~~~~~ 67 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK-------GENA-------KAFVER 67 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-------CCCH-------HHHHHH
Confidence 45789999999999999999999999999999999999999999999999988743 4556 778888
Q ss_pred HHHHHHHHHH
Q 002784 235 TVKAQMASFK 244 (881)
Q Consensus 235 ~i~~~~~~f~ 244 (881)
+++.++++++
T Consensus 68 ~~~~~~~~~~ 77 (143)
T cd00802 68 WIERIKEDVE 77 (143)
T ss_pred HHHHHHHHHH
Confidence 9888999888
No 71
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.00 E-value=2.3e-10 Score=134.23 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=82.6
Q ss_pred CCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCC--------cHHHHHHHHhcccccccCCC
Q 002784 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHG--------LPIELKVLQSLDEDAKKDLT 220 (881)
Q Consensus 149 ~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hG--------LPiE~~a~k~l~~~~~~~~~ 220 (881)
++.+++.+|+ ||||.+||||++..+..|+++|+.|++|++|.|+.|+|.|| +|....+.+.+|..-..--+
T Consensus 22 ~~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~ 100 (510)
T PRK00750 22 KPPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPD 100 (510)
T ss_pred CCcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCC
Confidence 3458998888 69999999999999999999999999999999999999998 78744455555533111112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCc
Q 002784 221 PSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLD 260 (881)
Q Consensus 221 p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~DW~~~y~T~d 260 (881)
| +.. +..|++.+.+.+++.|+++||.+| .|.|++
T Consensus 101 p--~G~-~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~ 134 (510)
T PRK00750 101 P--FGC-HESYAEHFNAPLREFLDRFGIEYE---FISATE 134 (510)
T ss_pred C--CCC-chHHHHHHHHHHHHHHHHcCCceE---EEehhh
Confidence 2 222 588999999999999999999777 344444
No 72
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.2e-07 Score=106.00 Aligned_cols=203 Identities=12% Similarity=0.179 Sum_probs=134.2
Q ss_pred CChhHHHHHHHh--CCCceeccCCCCccccccc-cCCCceeccchhHHHHHHHHhcCCccceeccccccccccCC-CCCe
Q 002784 429 HGQEDYVTSLKY--GLPILSPVDDEGKFTEEAG-KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRT-KKPT 504 (881)
Q Consensus 429 Hg~~Dy~~~~k~--gL~~~~~vd~~G~~~~~~~-~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt-~~Pi 504 (881)
-.+.||.+|+.- |-|- +-...| .-.|.++ |+...-...|.. .+-+|...+.-.+||.-.- -.-+
T Consensus 214 R~p~DFALWKAsK~gEP~---------WeSPWG~GRPGWHI--ECSaMas~~lG~-~lDIH~GG~DL~FPHHeNEiAQ~e 281 (586)
T KOG2007|consen 214 RSPADFALWKASKPGEPS---------WESPWGKGRPGWHI--ECSAMASAILGS-QLDIHGGGIDLAFPHHENEIAQSE 281 (586)
T ss_pred CChhhhhhhhhcCCCCCC---------CCCCCCCCCCCcee--eeHHHHHHhhcc-ccceecCcccccCCCcccHHHHHH
Confidence 357899999864 3221 111111 3457787 566555555544 3556666777778874320 0111
Q ss_pred EEeeccccc----------cchhhHHHHHHHhhccccccCCCCCCCCCCchHhHHhhhcCCCCceecChhHHHHHHHHHH
Q 002784 505 IFRATEQWF----------ASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYR 574 (881)
Q Consensus 505 i~r~t~QWF----------i~~~~lk~~al~~i~~v~~~P~~~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~ 574 (881)
.+.-.+||- ++-.+|.++..+-+. + ..++++|.+++||++++.+.|.++++++.+.+..+..+..
T Consensus 282 A~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiT----I-ke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~ 356 (586)
T KOG2007|consen 282 AAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFIT----I-KEALKKYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEK 356 (586)
T ss_pred HHhcCCccceeEEEcCeeeeccchhhhhhcccee----H-HHHHHhcCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHH
Confidence 222334552 222355555443332 1 1145699999999999999999999999999988888888
Q ss_pred HHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHH-hccChHHHHHHHHHHHHHHhhHHHHHHhhc
Q 002784 575 KLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESY-ESYQFFKIFQIIQRFIIVDLSNFYFDVAKD 653 (881)
Q Consensus 575 Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~y-e~y~f~~a~~~i~~F~~~~ls~~Yl~~~Kd 653 (881)
.+.|++.-+..-... ..+++.+.+.|.-++..+.....+|..+. ++++...++..+.+.+. .+|.|+...+.
T Consensus 357 ~~~~ff~~~~al~~~-----~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs--~~N~~i~~~~~ 429 (586)
T KOG2007|consen 357 SLNNFFLDVKALLRG-----AKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVS--QGNAYIRESGE 429 (586)
T ss_pred HHHHHHHHHHHHHhc-----cchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHh--hhhHHHHHhcc
Confidence 888777543322221 11245677889999999999999998877 68999999999999884 59999998874
Q ss_pred cc
Q 002784 654 RL 655 (881)
Q Consensus 654 rL 655 (881)
+.
T Consensus 430 ~~ 431 (586)
T KOG2007|consen 430 RP 431 (586)
T ss_pred cc
Confidence 43
No 73
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.72 E-value=3.1e-06 Score=101.09 Aligned_cols=136 Identities=9% Similarity=0.041 Sum_probs=85.7
Q ss_pred CCCCCchHhHHhhhcCCCCceecChhHH-HHH-------HHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHH
Q 002784 539 PGYGADVLRLWVSSVDYTGDVMIGPQVL-RQM-------SDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALF 610 (881)
Q Consensus 539 ~~yGaD~LRlwvas~~~~~D~~~s~~~l-~~~-------~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~ 610 (881)
..-|.|++||+..+.+..+|+.|+.+.+ ..- .=.+-++..++|-.- . ++. .....-..+.++-++.
T Consensus 412 ~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~--~-~~~---~~~~~l~~~~E~~Ll~ 485 (562)
T PRK12451 412 KQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKES--V-EFE---TCTFALKDDYSWSVVK 485 (562)
T ss_pred HHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcC--C-Ccc---ccccCCCCHHHHHHHH
Confidence 4789999999999999999999998873 211 112335555554421 1 111 1111112466778899
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 002784 611 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA 684 (881)
Q Consensus 611 ~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLa 684 (881)
.+..+.+.+.+++++|+++.+++.+++.+.. .|.|++.. ..+ .+......|.........+|...+.||.
T Consensus 486 ~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~--fN~fy~~~-~Vl-~~~~~~~~RL~L~~a~~~vL~~gL~LLG 555 (562)
T PRK12451 486 LLNKFPQVIEAAFNKNEPSVISKYVLDVAQS--FNKYYGNV-RIL-EESAEKDSRLALVYAVTVVLKEGLRLLG 555 (562)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--HHHHHHhC-CCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998844 56666643 222 1111112343333344556666666653
No 74
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=1e-05 Score=95.81 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=88.4
Q ss_pred CCCCCCCchHhHHhhhcCCCCceecChhHHHHH--------HHHHHHHhhHHHHHHhcccCCCCCCccCCCCCC-HhHHH
Q 002784 537 EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQM--------SDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLP-MIDQY 607 (881)
Q Consensus 537 ~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~--------~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~-~~Dr~ 607 (881)
+.+.-|.|++||+.++....+|+.|+++.+..- .=.+-++.+++|-.-.. +........ ..+. +.++-
T Consensus 419 iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~--~~~~~~~~~-~~l~~~~E~~ 495 (577)
T COG0018 419 IAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGED--ELDLSTEAD-ALLTELEERE 495 (577)
T ss_pred HHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhcccc--ccccccccc-hhccChHHHH
Confidence 456789999999999999999999998765321 11233555555443211 110000000 1222 23677
Q ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCC--hHHHHHHHHHHHHHHHHHHHHhh
Q 002784 608 ALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTT--SFTRRSCQTVLSAHLLSIVRVIA 684 (881)
Q Consensus 608 il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~--~~~r~s~q~vL~~il~~l~~lLa 684 (881)
++.+|.++-.-+.++.++++-+..+.-+++... .|++||=.. ++-..... ...|.........+|..-+.||.
T Consensus 496 L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~-~Fn~fY~~~---~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~LLG 570 (577)
T COG0018 496 LVKKLLEFPEVLEEAAEELEPHRLANYLYDLAG-SFNSFYNAC---PVLGAENEELRAARLALVKATRQVLKNGLDLLG 570 (577)
T ss_pred HHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHH-HHHHHHhhC---CcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999998874 599999773 22222211 11333333344555666566554
No 75
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.60 E-value=4.4e-08 Score=114.46 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=76.4
Q ss_pred CceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCC--------CcHHHHHHHHhcccccccCCCh
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCH--------GLPIELKVLQSLDEDAKKDLTP 221 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~h--------GLPiE~~a~k~l~~~~~~~~~p 221 (881)
+++++.+|.+ |||.+||||++..+..|+++|+.|++|++|.|+.|+|+| ++| + ..++.+|..-..--+|
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p-~-~~~~ylG~Pl~~vpdp 94 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP-E-ELETYLGMPLTRIPDP 94 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc-H-HHHHhCCCcceecCCC
Confidence 4799999999 999999999999999999999999999999999999999 666 2 2344444321111123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 002784 222 SKLRAKAAKFAKATVKAQMASFKRYGVWAD 251 (881)
Q Consensus 222 ~~~~~~~~~~a~~~i~~~~~~f~rlGi~~D 251 (881)
.. .+..|++.+...+.+.|.+||+.++
T Consensus 95 ~g---~~~s~~~h~~~~~~~~l~~~gi~~e 121 (515)
T TIGR00467 95 EG---CKTSYAEHFLIPFLESLPVLGINPE 121 (515)
T ss_pred CC---CcHHHHHHHHHHHHHHHHHcCCeEE
Confidence 22 1478999999999999999999665
No 76
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=98.03 E-value=1e-05 Score=87.72 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=61.0
Q ss_pred ceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHH
Q 002784 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAK 230 (881)
Q Consensus 151 ~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~ 230 (881)
+.|+.- |.+-..+|||||++++.-|++.||.+..||+|.|+.+.-.--=+|-.+|. +.++++ .+
T Consensus 10 ~~Y~CG--PTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~-------~~g~~~-------~e 73 (300)
T PF01406_consen 10 RMYVCG--PTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAR-------EEGVSP-------QE 73 (300)
T ss_dssp EEEEEE--EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHH-------HTTS-H-------HH
T ss_pred EEEcCC--CCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHH-------hccCCH-------HH
Confidence 344443 56668999999999999999999999999999999998765444444444 345666 77
Q ss_pred HHHHHHHHHHHHHHHhcccc
Q 002784 231 FAKATVKAQMASFKRYGVWA 250 (881)
Q Consensus 231 ~a~~~i~~~~~~f~rlGi~~ 250 (881)
++.++++.+.++|++|||.-
T Consensus 74 la~~y~~~f~~dm~~Lnv~~ 93 (300)
T PF01406_consen 74 LARRYEEEFFEDMKALNVLP 93 (300)
T ss_dssp HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 88889999999999999954
No 77
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=98.01 E-value=3.5e-07 Score=64.91 Aligned_cols=30 Identities=47% Similarity=1.076 Sum_probs=22.8
Q ss_pred CCCCCCccceecCCCCCCCCCCCChhhHHH
Q 002784 839 GSKCERCWNYSTQVGSFVEHPTLCSRCYEV 868 (881)
Q Consensus 839 ~~KC~RCW~~~~~v~~~~~~~~lC~RC~~v 868 (881)
|+||+|||++..+++.+..+..+|+||.+|
T Consensus 1 G~~C~rC~~~~~~~~~~~r~~~~C~rCq~v 30 (30)
T PF06827_consen 1 GEKCPRCWNYIEDIGINGRSTYLCPRCQKV 30 (30)
T ss_dssp TSB-TTT--BBEEEEETTEEEEE-TTTCCH
T ss_pred CCcCccCCCcceEeEecCCCCeECcCCcCC
Confidence 689999999999998878888999999764
No 78
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=97.58 E-value=0.00022 Score=80.72 Aligned_cols=58 Identities=28% Similarity=0.343 Sum_probs=48.6
Q ss_pred CCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHH
Q 002784 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIEL 205 (881)
Q Consensus 148 ~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~ 205 (881)
.+++.+|--.=|+|+|++||||++|.+|+|.++|-.+-.||+|.-..=....|..+..
T Consensus 18 ~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~ 75 (354)
T PF00750_consen 18 KGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGL 75 (354)
T ss_dssp TSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHH
T ss_pred CCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHH
Confidence 4567888889999999999999999999999999999999999888888888987764
No 79
>PLN02286 arginine-tRNA ligase
Probab=97.38 E-value=0.00054 Score=82.24 Aligned_cols=139 Identities=5% Similarity=0.002 Sum_probs=89.4
Q ss_pred CCCCCchHhHHhhhcCCCCceecChhHHHHH--------HHHHHHHhhHHHHHHhcccCCCCCCccCCCCCCHhHHHHHH
Q 002784 539 PGYGADVLRLWVSSVDYTGDVMIGPQVLRQM--------SDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALF 610 (881)
Q Consensus 539 ~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~--------~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~ 610 (881)
...|.|++||+.++....+|+.|+++.+-.. .=.+-++..++|-.-....++.. ..+..-..+.++-++.
T Consensus 423 ~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~--~~~~~l~~~~E~~L~~ 500 (576)
T PLN02286 423 EAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKK--TGKIVLDHPDERALGL 500 (576)
T ss_pred HHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccc--cccccCCCHHHHHHHH
Confidence 4789999999999999999999999874211 11233444444432110001100 0011112467788999
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 002784 611 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA 684 (881)
Q Consensus 611 ~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~~r~s~q~vL~~il~~l~~lLa 684 (881)
.|..+...+.++.++++-+..+.-+++... .|..||=+. ++-. ..+...|.........+|...+.||.
T Consensus 501 ~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~-~F~~fY~~~---~Vl~-~~~~~aRL~L~~a~~~vL~~gL~LLG 569 (576)
T PLN02286 501 HLLQFPEVVEEACTDLLPNRLCEYLYNLSE-KFTKFYSNC---KVNG-SEEETSRLLLCEATAIVMRKCFHLLG 569 (576)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHH-HHHHHHhcC---ccCC-CCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998875 599999532 2222 12224455544555667777777764
No 80
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.02 E-value=0.00087 Score=71.10 Aligned_cols=72 Identities=24% Similarity=0.414 Sum_probs=48.3
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHH
Q 002784 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (881)
Q Consensus 157 gPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i 236 (881)
=+|.|||.+|+||+++.++.++++| ++++.|+.=+|.. ++..+ .|+.- ..
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDt--------------------D~~r~--~~~~~---~~ 55 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDT--------------------DPRTK--RPDPE---AY 55 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcC--------------------CCCcc--cchHH---HH
Confidence 3799999999999999999999999 4455554433332 11110 01222 23
Q ss_pred HHHHHHHHHhccccccCCCccCCc
Q 002784 237 KAQMASFKRYGVWADWNNPYLTLD 260 (881)
Q Consensus 237 ~~~~~~f~rlGi~~DW~~~y~T~d 260 (881)
+.+.++++.||+ +|+.+|+..+
T Consensus 56 ~~i~~dL~wLGl--~~d~~~~qS~ 77 (240)
T cd09287 56 DMIPEDLEWLGV--KWDEVVIASD 77 (240)
T ss_pred HHHHHHHHHcCC--CCCCccchhc
Confidence 337899999999 8887665554
No 81
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=96.63 E-value=0.0027 Score=75.12 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=52.0
Q ss_pred eEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHH
Q 002784 152 FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKF 231 (881)
Q Consensus 152 f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~ 231 (881)
-+++==||.|||.||||||++.++.+.++|- ..|.-++.+ |. .+|. .-
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~--~~G~~iLRi---dD--------------------TDp~-------R~ 140 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKK--YKGKLIIRF---DD--------------------TDPR-------RV 140 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCEEEEEe---Cc--------------------CCcc-------cc
Confidence 3566679999999999999999999999972 244443332 22 2331 11
Q ss_pred HHHHHHHHHHHHHHhccccccCCCccCCc
Q 002784 232 AKATVKAQMASFKRYGVWADWNNPYLTLD 260 (881)
Q Consensus 232 a~~~i~~~~~~f~rlGi~~DW~~~y~T~d 260 (881)
..++++.+.++++.||+ +|+..+++.|
T Consensus 141 ~~e~~~~I~edL~wLGi--~~d~~~~qSd 167 (560)
T TIGR00463 141 KPEAYDMILEDLDWLGV--KGDEVVYQSD 167 (560)
T ss_pred cHHHHHHHHHHHHHcCC--CCCccccccc
Confidence 12356668999999999 5877776655
No 82
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=96.51 E-value=0.003 Score=74.88 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=51.1
Q ss_pred EEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHH
Q 002784 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (881)
Q Consensus 153 ~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a 232 (881)
+.+==+|.|||.||||||++.++.+.++| ...|.-++.+ |.+ +|.-- + ..
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar--~~~G~~iLRi---dDT--------------------Dpk~~----R-~~ 151 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK--MYGGKFILRF---EDT--------------------DPRTK----R-PD 151 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEeE---ccC--------------------CCCcc----c-ch
Confidence 44446999999999999999999999999 2344444333 322 22000 0 11
Q ss_pred HHHHHHHHHHHHHhccccccCCCccCCc
Q 002784 233 KATVKAQMASFKRYGVWADWNNPYLTLD 260 (881)
Q Consensus 233 ~~~i~~~~~~f~rlGi~~DW~~~y~T~d 260 (881)
.++.+.+.++++.||+ +|+..|++.|
T Consensus 152 ~e~~~~I~edL~wLGl--~wD~~~~qSd 177 (567)
T PRK04156 152 PEAYDMILEDLKWLGV--KWDEVVIQSD 177 (567)
T ss_pred HHHHHHHHHHHHHcCC--CCCCccCccc
Confidence 2234568899999999 8888777665
No 83
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=96.47 E-value=0.0042 Score=72.77 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=53.4
Q ss_pred EEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHH
Q 002784 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (881)
Q Consensus 153 ~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a 232 (881)
+++==||-|||.||||||++.++...++|-+ .|.-++.+ .+.+|. .-.
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~--gG~~iLRi-----------------------EDTDp~-------R~~ 59 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRY--KGRLILRF-----------------------DDTNPS-------KEK 59 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE-----------------------CCCCCC-------ccc
Confidence 5556699999999999999999999999853 45544432 223341 123
Q ss_pred HHHHHHHHHHHHHhccccccCCCccCCc
Q 002784 233 KATVKAQMASFKRYGVWADWNNPYLTLD 260 (881)
Q Consensus 233 ~~~i~~~~~~f~rlGi~~DW~~~y~T~d 260 (881)
.++++.+.++++.||+ +|+..|++.+
T Consensus 60 ~e~~~~I~~dL~WLGl--~wD~~~~qSd 85 (523)
T PLN03233 60 AEFEESIIEDLGKIEI--KPDSVSFTSD 85 (523)
T ss_pred hHHHHHHHHHHHHhCC--CCCCCccccc
Confidence 3456678999999999 7887776654
No 84
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=96.33 E-value=0.0047 Score=67.01 Aligned_cols=67 Identities=16% Similarity=0.336 Sum_probs=47.5
Q ss_pred CCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHH
Q 002784 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (881)
Q Consensus 158 PPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~ 237 (881)
+|-|||.|||||+++.++.-.++|- ..|.-++.+== .++. ....++.+
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar~--~gG~~iLRiED-----------------------tD~~-------R~~~~~~~ 53 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDARA--HGGRWLVRIED-----------------------LDPP-------REVPGAAD 53 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEeCc-----------------------CCCC-------CCChHHHH
Confidence 7999999999999999999999983 35665555422 2221 11223456
Q ss_pred HHHHHHHHhccccccCC-CccC
Q 002784 238 AQMASFKRYGVWADWNN-PYLT 258 (881)
Q Consensus 238 ~~~~~f~rlGi~~DW~~-~y~T 258 (881)
.+.++++.||+ +|+. +|+.
T Consensus 54 ~I~~dL~wLGl--~wDe~~~~Q 73 (272)
T TIGR03838 54 DILRTLEAYGL--HWDGEVVYQ 73 (272)
T ss_pred HHHHHHHHcCC--CCCCCeeee
Confidence 68999999999 8875 3443
No 85
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=96.28 E-value=0.0038 Score=69.48 Aligned_cols=69 Identities=25% Similarity=0.512 Sum_probs=41.7
Q ss_pred CCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHH
Q 002784 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (881)
Q Consensus 158 PPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~ 237 (881)
+|-|||.|||||+++.++.-.++| ...|.-++.+= ++++. .-..++.+
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRie-----------------------DtD~~-------R~~~~~~~ 54 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIE-----------------------DTDPE-------RCRPEFYD 54 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEE-----------------------TSSTT-------TCHHHHHH
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecc-----------------------ccccc-------cchhhHHH
Confidence 799999999999999999999988 34555555432 22331 11224556
Q ss_pred HHHHHHHHhccccccC-CCccCCc
Q 002784 238 AQMASFKRYGVWADWN-NPYLTLD 260 (881)
Q Consensus 238 ~~~~~f~rlGi~~DW~-~~y~T~d 260 (881)
.+.++++.||+ +|+ .+|+..+
T Consensus 55 ~i~~~L~wlGl--~~D~~~~~QS~ 76 (314)
T PF00749_consen 55 AILEDLRWLGL--EWDYGPYYQSD 76 (314)
T ss_dssp HHHHHHHHHT-----STCEEEGGG
T ss_pred HHHhheeEEEE--ecCCeEEeHHH
Confidence 68999999999 776 4555443
No 86
>PLN02907 glutamate-tRNA ligase
Probab=96.27 E-value=0.0052 Score=75.26 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=53.7
Q ss_pred EEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHH
Q 002784 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (881)
Q Consensus 153 ~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a 232 (881)
+++==||-|||.||||||++.++...++|- ..|.-++.+ .+.+|. .-.
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLR~-----------------------eDTdp~-------r~~ 261 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFARR--YKGKLIVRF-----------------------DDTNPS-------KES 261 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe-----------------------cCCCCC-------cCC
Confidence 566679999999999999999999999983 345444332 123331 122
Q ss_pred HHHHHHHHHHHHHhccccccCCCccCCc
Q 002784 233 KATVKAQMASFKRYGVWADWNNPYLTLD 260 (881)
Q Consensus 233 ~~~i~~~~~~f~rlGi~~DW~~~y~T~d 260 (881)
.++++.+.++++-||+ +|+..|++.|
T Consensus 262 ~e~~~~I~~dl~wLG~--~~d~~~~qS~ 287 (722)
T PLN02907 262 DEFVENILKDIETLGI--KYDAVTYTSD 287 (722)
T ss_pred hHHHHHHHHHHHHcCC--CCCCcccccc
Confidence 3456678999999999 8888777655
No 87
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=96.24 E-value=0.0061 Score=64.48 Aligned_cols=69 Identities=23% Similarity=0.412 Sum_probs=48.2
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHH
Q 002784 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (881)
Q Consensus 157 gPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i 236 (881)
=+|-|||.||+||+++.++.-.++|-+ .|.-++.+== .++. .-..++.
T Consensus 6 FAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieD-----------------------tD~~-------R~~~~~~ 53 (230)
T cd00418 6 FAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIED-----------------------TDPE-------RSRPEYV 53 (230)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCc-----------------------CCCC-------CCChHHH
Confidence 379999999999999999999998864 4555554321 2221 1122345
Q ss_pred HHHHHHHHHhccccccCC-CccCC
Q 002784 237 KAQMASFKRYGVWADWNN-PYLTL 259 (881)
Q Consensus 237 ~~~~~~f~rlGi~~DW~~-~y~T~ 259 (881)
+.+.++++.||+ +|+. +|+..
T Consensus 54 ~~I~~dL~wlGl--~wd~~~~~QS 75 (230)
T cd00418 54 ESILEDLKWLGL--DWDEGPYRQS 75 (230)
T ss_pred HHHHHHHHHcCC--CCCCCeeehh
Confidence 668999999999 8886 55443
No 88
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=96.22 E-value=0.006 Score=72.35 Aligned_cols=74 Identities=28% Similarity=0.439 Sum_probs=52.6
Q ss_pred EEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHH
Q 002784 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (881)
Q Consensus 153 ~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a 232 (881)
+++==||-|||.||||||++.++...++|-+ .|.-++.+ .+.+|. .-.
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLRi-----------------------EDTDp~-------R~~ 100 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFRF-----------------------DDTNPS-------KEK 100 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE-----------------------cCCCCc-------ccC
Confidence 5556699999999999999999999999853 45444332 234442 122
Q ss_pred HHHHHHHHHHHHHhccccccCC-CccCCc
Q 002784 233 KATVKAQMASFKRYGVWADWNN-PYLTLD 260 (881)
Q Consensus 233 ~~~i~~~~~~f~rlGi~~DW~~-~y~T~d 260 (881)
.++++.++++++.||+ +|+. +|++.|
T Consensus 101 ~e~~d~IleDL~WLGl--~wDe~~~~QSd 127 (601)
T PTZ00402 101 EHFEQAILDDLATLGV--SWDVGPTYSSD 127 (601)
T ss_pred HHHHHHHHHHHHHCCC--CCCCceeeccc
Confidence 3456678999999999 8875 555544
No 89
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=96.12 E-value=0.01 Score=62.94 Aligned_cols=70 Identities=24% Similarity=0.208 Sum_probs=48.6
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHH
Q 002784 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (881)
Q Consensus 157 gPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i 236 (881)
=+|.|||.||+||+++.++.-.++|-+ .|.-++.+ +++++. .-..++.
T Consensus 6 FAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLRi-----------------------eDtD~~-------R~~~~~~ 53 (238)
T cd00807 6 FPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLRF-----------------------DDTNPE-------KEEEEYV 53 (238)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe-----------------------cCCCCc-------ccchHHH
Confidence 479999999999999999999998753 45444432 223331 1223455
Q ss_pred HHHHHHHHHhccccccCCCccCCc
Q 002784 237 KAQMASFKRYGVWADWNNPYLTLD 260 (881)
Q Consensus 237 ~~~~~~f~rlGi~~DW~~~y~T~d 260 (881)
+.+.++++.||+ +|+.+|+..+
T Consensus 54 ~~I~~dL~wlGl--~wD~~~~QS~ 75 (238)
T cd00807 54 DSIKEDVKWLGI--KPYKVTYASD 75 (238)
T ss_pred HHHHHHHHHcCC--CCCCceeccc
Confidence 668999999999 7876655443
No 90
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=95.99 E-value=0.011 Score=69.71 Aligned_cols=72 Identities=24% Similarity=0.161 Sum_probs=50.8
Q ss_pred EEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHH
Q 002784 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (881)
Q Consensus 153 ~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a 232 (881)
+.+==||-|||.||||||++.++...++|.+ .|.-++.+ .+.+|. .-.
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~--gG~~iLRi-----------------------EDTDp~-------r~~ 99 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAH--GGKCYLRY-----------------------DDTNPE-------TEE 99 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE-----------------------CCCCcc-------ccC
Confidence 4455699999999999999999999999863 35444332 123331 123
Q ss_pred HHHHHHHHHHHHHhccccccCCCccC
Q 002784 233 KATVKAQMASFKRYGVWADWNNPYLT 258 (881)
Q Consensus 233 ~~~i~~~~~~f~rlGi~~DW~~~y~T 258 (881)
.++.+.+.++++.||+ +|+..+.+
T Consensus 100 ~e~~~~I~~dL~wLGi--~~D~~~~q 123 (574)
T PTZ00437 100 QVYIDAIMEMVKWMGW--KPDWVTFS 123 (574)
T ss_pred hHHHHHHHHHHHHcCC--CCCCCCcC
Confidence 3456678999999999 78766654
No 91
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=0.008 Score=69.93 Aligned_cols=74 Identities=24% Similarity=0.435 Sum_probs=53.0
Q ss_pred EEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHH
Q 002784 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (881)
Q Consensus 153 ~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a 232 (881)
|.+==+|.|||.||||||++.++--.++|.+ .|.-++.+= +.+| ..-.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLRiE-----------------------DTD~-------~R~~ 57 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIE-----------------------DTDP-------ERET 57 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEEec-----------------------CCCC-------CCCC
Confidence 5566699999999999999999999999864 465555432 2222 1112
Q ss_pred HHHHHHHHHHHHHhccccccCC-CccCCc
Q 002784 233 KATVKAQMASFKRYGVWADWNN-PYLTLD 260 (881)
Q Consensus 233 ~~~i~~~~~~f~rlGi~~DW~~-~y~T~d 260 (881)
.++.+.+.++++-||+ +|+. +|+..+
T Consensus 58 ~e~~~~I~~~L~WLGl--~wde~~~~QS~ 84 (472)
T COG0008 58 PEAEDAILEDLEWLGL--DWDEGPYYQSE 84 (472)
T ss_pred HHHHHHHHHHHHhcCC--CCCCceeehhh
Confidence 2345668999999999 9988 466554
No 92
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=95.85 E-value=0.012 Score=69.22 Aligned_cols=70 Identities=26% Similarity=0.308 Sum_probs=48.4
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHH
Q 002784 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (881)
Q Consensus 157 gPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i 236 (881)
=||-|||.||||||++.++...++|-+ .|.-++.+= +.+|. .-..+++
T Consensus 5 FaPsPtG~LHiG~ar~al~n~~~A~~~--~G~~iLRie-----------------------DTd~~-------r~~~e~~ 52 (522)
T TIGR00440 5 FPPEPNGYLHIGHAKSICLNFGYAKYY--NGTCNLRFD-----------------------DTNPV-------KEDPEYV 52 (522)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEc-----------------------CCCcc-------cCChHHH
Confidence 489999999999999999999999843 454444331 22331 1223456
Q ss_pred HHHHHHHHHhccccccC-CCccCCc
Q 002784 237 KAQMASFKRYGVWADWN-NPYLTLD 260 (881)
Q Consensus 237 ~~~~~~f~rlGi~~DW~-~~y~T~d 260 (881)
+.+.++++-||+ +|+ .+|++.|
T Consensus 53 ~~I~~dL~wLG~--~~d~~~~~qS~ 75 (522)
T TIGR00440 53 ESIKRDVEWLGF--KWEGKIRYSSD 75 (522)
T ss_pred HHHHHHHHHcCC--CCCCCceEccc
Confidence 678999999999 784 4555543
No 93
>PLN02859 glutamine-tRNA ligase
Probab=95.76 E-value=0.014 Score=71.12 Aligned_cols=74 Identities=22% Similarity=0.178 Sum_probs=53.0
Q ss_pred EEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHH
Q 002784 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (881)
Q Consensus 153 ~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a 232 (881)
+.+==||-|||.||||||++..+.-.++|.+ .|.-.+.+ .+.+|. .-.
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRi-----------------------eDTdp~-------r~~ 312 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRF-----------------------DDTNPE-------AEK 312 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe-----------------------cCCCCC-------ccc
Confidence 4555699999999999999999999999874 45443332 123331 123
Q ss_pred HHHHHHHHHHHHHhccccccCCCccCCc
Q 002784 233 KATVKAQMASFKRYGVWADWNNPYLTLD 260 (881)
Q Consensus 233 ~~~i~~~~~~f~rlGi~~DW~~~y~T~d 260 (881)
.++++.+.++++.||+ +|+..|++.|
T Consensus 313 ~e~~~~I~edL~WLG~--~~d~~~~qSd 338 (788)
T PLN02859 313 KEYIDHIEEIVEWMGW--EPFKITYTSD 338 (788)
T ss_pred hHHHHHHHHHHHHcCC--CCCCcccccH
Confidence 3456678999999996 8887777654
No 94
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=95.65 E-value=0.014 Score=68.52 Aligned_cols=70 Identities=19% Similarity=0.365 Sum_probs=48.7
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHH
Q 002784 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (881)
Q Consensus 157 gPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i 236 (881)
=+|-|||.|||||+++.++.-.++|-+ .|.-++.+= +.++ .....+++
T Consensus 6 fAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRie-----------------------DtD~-------~R~~~~~~ 53 (470)
T TIGR00464 6 FAPSPTGYLHIGGARTALFNYLFAKHT--GGEFILRIE-----------------------DTDL-------ERNIEEAE 53 (470)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeC-----------------------cCCC-------ccCChHHH
Confidence 379999999999999999999998842 354444331 2222 11223456
Q ss_pred HHHHHHHHHhccccccC-CCccCCc
Q 002784 237 KAQMASFKRYGVWADWN-NPYLTLD 260 (881)
Q Consensus 237 ~~~~~~f~rlGi~~DW~-~~y~T~d 260 (881)
+.+.++++.||+ +|+ .+|+..+
T Consensus 54 ~~i~~~L~wlGl--~~de~~~~QS~ 76 (470)
T TIGR00464 54 EAILEGLKWLGI--SWDEGPYYQSQ 76 (470)
T ss_pred HHHHHHHHHCCC--CCCCCeeehhC
Confidence 678999999999 888 5565544
No 95
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=95.65 E-value=0.016 Score=67.92 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=50.3
Q ss_pred ecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHH
Q 002784 155 HDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKA 234 (881)
Q Consensus 155 ~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~ 234 (881)
+==.|-|||.||+|||++.++.-.++| ...|.-++.+==+ ++ .....+
T Consensus 7 tRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDT-----------------------D~-------~R~~~~ 54 (513)
T PRK14895 7 TRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDT-----------------------DK-------ERSTKE 54 (513)
T ss_pred EeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCC-----------------------Cc-------cccChH
Confidence 334799999999999999999999998 3456655554222 22 112334
Q ss_pred HHHHHHHHHHHhccccccC-CCccCCc
Q 002784 235 TVKAQMASFKRYGVWADWN-NPYLTLD 260 (881)
Q Consensus 235 ~i~~~~~~f~rlGi~~DW~-~~y~T~d 260 (881)
.++.+.+.++.||+ ||+ .+|+..+
T Consensus 55 ~~~~i~~~L~WLGl--~wDe~py~QSe 79 (513)
T PRK14895 55 AVEAIFSGLKWLGL--DWNGEVIFQSK 79 (513)
T ss_pred HHHHHHHHHHHcCC--CCCCCceeEeC
Confidence 56668999999999 887 4555443
No 96
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=95.61 E-value=0.015 Score=68.42 Aligned_cols=74 Identities=26% Similarity=0.290 Sum_probs=51.1
Q ss_pred EEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHH
Q 002784 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (881)
Q Consensus 153 ~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a 232 (881)
+++==||-|||.||||||++.++...++|.+ .|.-++.+ .+.+|. .-.
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~--~G~~iLRi-----------------------eDTd~~-------r~~ 77 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDY--GGKCNLRF-----------------------DDTNPE-------KED 77 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE-----------------------CCCCCC-------cCC
Confidence 5556699999999999999999999999853 45444332 122331 122
Q ss_pred HHHHHHHHHHHHHhcccccc-CCCccCCc
Q 002784 233 KATVKAQMASFKRYGVWADW-NNPYLTLD 260 (881)
Q Consensus 233 ~~~i~~~~~~f~rlGi~~DW-~~~y~T~d 260 (881)
.++++.+.++++.||+ +| +.+|++.+
T Consensus 78 ~e~~~~I~~dL~wLGi--~~d~~~~~qS~ 104 (554)
T PRK05347 78 QEYVDSIKEDVRWLGF--DWSGELRYASD 104 (554)
T ss_pred hHHHHHHHHHHHHcCC--CCCCCceeeec
Confidence 3456678999999999 77 45565544
No 97
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.45 E-value=0.022 Score=60.70 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHHH
Q 002784 157 GPPYANGNLHMGHALNKILKDIINRY 182 (881)
Q Consensus 157 gPPYaNG~lHiGHaln~ilkDii~Ry 182 (881)
=+|-|||.||+||+++.++.-.++|-
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar~ 31 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFARK 31 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 37999999999999999999998884
No 98
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=95.34 E-value=0.02 Score=65.91 Aligned_cols=69 Identities=13% Similarity=0.315 Sum_probs=49.0
Q ss_pred CCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHH
Q 002784 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (881)
Q Consensus 158 PPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~ 237 (881)
.|-|||.||+|||++.++.-.++|- ..|.-++.+== .++ .....++.+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLRiED-----------------------TD~-------~R~~~e~~~ 52 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIRIED-----------------------TDK-------ERNIEGKDK 52 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCc-----------------------CCC-------CcCChHHHH
Confidence 6999999999999999999998875 34555554322 222 112234556
Q ss_pred HHHHHHHHhccccccCCCccCCc
Q 002784 238 AQMASFKRYGVWADWNNPYLTLD 260 (881)
Q Consensus 238 ~~~~~f~rlGi~~DW~~~y~T~d 260 (881)
.+.++++.||+ ||+.+|+..+
T Consensus 53 ~I~~~L~WlGl--~wDe~y~QSe 73 (433)
T PRK12410 53 EILEILNLFGI--SWDKLVYQSE 73 (433)
T ss_pred HHHHHHHHcCC--CCCCCeehhc
Confidence 68999999999 8887765544
No 99
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=95.33 E-value=0.022 Score=62.68 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=47.7
Q ss_pred ecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHH
Q 002784 155 HDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKA 234 (881)
Q Consensus 155 ~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~ 234 (881)
+==+|-|||.||+||+++.++.-.++|-+ .|.-++.+= ++++. .-..+
T Consensus 8 ~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiE-----------------------DtD~~-------R~~~~ 55 (299)
T PRK05710 8 GRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIE-----------------------DIDPP-------REVPG 55 (299)
T ss_pred EEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEEC-----------------------cCCCC-------ccchH
Confidence 34489999999999999999999888754 354444331 12221 11223
Q ss_pred HHHHHHHHHHHhccccccCC-CccCC
Q 002784 235 TVKAQMASFKRYGVWADWNN-PYLTL 259 (881)
Q Consensus 235 ~i~~~~~~f~rlGi~~DW~~-~y~T~ 259 (881)
+.+.+.++++.||+ +|+. +|+..
T Consensus 56 ~~~~I~~dL~wlGl--~wDe~~~~QS 79 (299)
T PRK05710 56 AADAILADLEWLGL--HWDGPVLYQS 79 (299)
T ss_pred HHHHHHHHHHHCCC--CCCCCceEee
Confidence 45568999999999 8884 55433
No 100
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=95.24 E-value=0.024 Score=69.70 Aligned_cols=74 Identities=30% Similarity=0.384 Sum_probs=51.9
Q ss_pred EEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHH
Q 002784 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (881)
Q Consensus 153 ~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a 232 (881)
+++==||.|||.||||||++.++...++|-+ .|.-++.+ .+.+|. .-.
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~~--~G~~~LR~-----------------------eDTd~~-------r~~ 79 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARDY--GGRCHLRM-----------------------DDTNPE-------TED 79 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe-----------------------CCCCCC-------cCC
Confidence 6666799999999999999999999998743 35433332 123331 122
Q ss_pred HHHHHHHHHHHHHhccccccCC-CccCCc
Q 002784 233 KATVKAQMASFKRYGVWADWNN-PYLTLD 260 (881)
Q Consensus 233 ~~~i~~~~~~f~rlGi~~DW~~-~y~T~d 260 (881)
.++++.+.++++.||+ +|+. +|++.|
T Consensus 80 ~e~~~~I~~dl~wLG~--~wd~~~~~qS~ 106 (771)
T PRK14703 80 TEYVEAIKDDVRWLGF--DWGEHLYYASD 106 (771)
T ss_pred hHHHHHHHHHHHHcCC--CCCCCceEeec
Confidence 3456678999999999 7865 466655
No 101
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=95.03 E-value=0.041 Score=63.78 Aligned_cols=66 Identities=20% Similarity=0.334 Sum_probs=46.5
Q ss_pred CCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHH
Q 002784 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (881)
Q Consensus 157 gPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i 236 (881)
=+|-|||.||||||++.++.-.++|-+ .|.-++.+==+| + ..-..+.+
T Consensus 7 FAPSPTG~lHiG~artAL~n~l~Ar~~--gG~fiLRIEDTD-----------------------~-------~Rs~~~~~ 54 (445)
T PRK12558 7 FAPSPTGYLHVGNARTALLNWLYARKH--GGKFILRIDDTD-----------------------L-------ERSKQEYA 54 (445)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEeccCC-----------------------c-------ccchHHHH
Confidence 479999999999999999988887753 455555442222 2 11224566
Q ss_pred HHHHHHHHHhccccccCCCc
Q 002784 237 KAQMASFKRYGVWADWNNPY 256 (881)
Q Consensus 237 ~~~~~~f~rlGi~~DW~~~y 256 (881)
+.++++++.||+ +|+..|
T Consensus 55 ~~I~e~L~wLGI--~~De~y 72 (445)
T PRK12558 55 DAIAEDLKWLGI--NWDRTF 72 (445)
T ss_pred HHHHHHHHHcCC--CCCccc
Confidence 778999999999 666544
No 102
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=94.88 E-value=0.021 Score=63.48 Aligned_cols=53 Identities=26% Similarity=0.407 Sum_probs=41.4
Q ss_pred chhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhccccccCCC
Q 002784 469 DGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 536 (881)
Q Consensus 469 ~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~ 536 (881)
+.-..+++.|.++|.+...+. |+ +.++|||.++.++++++++.++.+.|.|+.
T Consensus 114 ~~v~~~f~~L~~~G~iY~~~~-------------~v--~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~ 166 (312)
T cd00668 114 KAVELIFSRLYEKGLIYRGTH-------------PV--RITEQWFFDMPKFKEKLLKALRRGKIVPEH 166 (312)
T ss_pred HHHHHHHHHHHHCCCEEeecc-------------ee--EeeeeEEEEcHHHHHHHHHHHhcCCcCChH
Confidence 345567888888887665332 11 789999999999999999999888888875
No 103
>PLN02627 glutamyl-tRNA synthetase
Probab=94.72 E-value=0.039 Score=64.90 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=48.2
Q ss_pred EEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHH
Q 002784 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (881)
Q Consensus 153 ~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a 232 (881)
+.+==.|-|||.||||||++.++.-.++|- ..|.-++.+==+ ++ ....
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~--~gG~fiLRIEDT-----------------------D~-------~R~~ 93 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDT-----------------------DL-------ARST 93 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--hCCEEEEEeCcC-----------------------CC-------CCCC
Confidence 444447899999999999999999999983 346555554222 22 1123
Q ss_pred HHHHHHHHHHHHHhccccccCC
Q 002784 233 KATVKAQMASFKRYGVWADWNN 254 (881)
Q Consensus 233 ~~~i~~~~~~f~rlGi~~DW~~ 254 (881)
.++.+.+.++++.||+ ||+.
T Consensus 94 ~e~~~~I~~~L~WLGl--~wDe 113 (535)
T PLN02627 94 KESEEAVLRDLKWLGL--DWDE 113 (535)
T ss_pred hHHHHHHHHHHHHcCC--CCCc
Confidence 3456668999999999 8885
No 104
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=93.84 E-value=0.075 Score=62.49 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=47.1
Q ss_pred ecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHH
Q 002784 155 HDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKA 234 (881)
Q Consensus 155 ~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~ 234 (881)
+==+|-|||.||+||+++.++.-.++|-+ .|.-++.+= +.++ .....+
T Consensus 7 ~RfAPSPtG~lHiG~~rtal~n~l~Ar~~--~G~fiLRie-----------------------DtD~-------~R~~~~ 54 (476)
T PRK01406 7 TRFAPSPTGYLHIGGARTALFNWLFARHH--GGKFILRIE-----------------------DTDQ-------ERSTEE 54 (476)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeC-----------------------cCCC-------CCCChH
Confidence 34489999999999999999999988853 454444432 1222 123334
Q ss_pred HHHHHHHHHHHhccccccCCC
Q 002784 235 TVKAQMASFKRYGVWADWNNP 255 (881)
Q Consensus 235 ~i~~~~~~f~rlGi~~DW~~~ 255 (881)
.++.+.++++.||+ +|+..
T Consensus 55 ~~~~i~~~L~wlGl--~~De~ 73 (476)
T PRK01406 55 AEEAILEGLKWLGL--DWDEG 73 (476)
T ss_pred HHHHHHHHHHHCCC--CCCCC
Confidence 56678999999999 88753
No 105
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=93.40 E-value=0.03 Score=62.69 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=62.4
Q ss_pred CCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCC--------CcHHHHHHHHhcccccccCC
Q 002784 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCH--------GLPIELKVLQSLDEDAKKDL 219 (881)
Q Consensus 148 ~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~h--------GLPiE~~a~k~l~~~~~~~~ 219 (881)
+++.+++-+|. .|+|.+|||+..--+..|++.|=-+-+|++|.++..||.. ++|=+ ...+.++..- ..+
T Consensus 21 ~~~~~v~~sG~-sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~-~~~~ylg~Pl-t~V 97 (360)
T PF01921_consen 21 GKEPYVFASGI-SPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP-ELEKYLGKPL-TRV 97 (360)
T ss_dssp --SEEEEEEEE---SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC--CCCCTTSBT-TTS
T ss_pred CCccEEEecCC-CCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH-HHHHhcCCcc-ccC
Confidence 34677877775 7899999999999999999999999999999999999984 34444 2223333211 111
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 002784 220 -TPSKLRAKAAKFAKATVKAQMASFKRYGVWAD 251 (881)
Q Consensus 220 -~p~~~~~~~~~~a~~~i~~~~~~f~rlGi~~D 251 (881)
+| +.. |..|++.+...+.+.+..+|+-.+
T Consensus 98 PdP--~G~-~~SyaeH~~~~~~~~L~~~gie~e 127 (360)
T PF01921_consen 98 PDP--FGC-HESYAEHFNAPFEEFLDEFGIEYE 127 (360)
T ss_dssp B-T--TSS-SSCHHHHHHHHHHHHHHTTT---E
T ss_pred CCC--CCC-CccHHHHHHHHHHHHHHHcCCceE
Confidence 23 211 467999999999999999999554
No 106
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=92.51 E-value=0.13 Score=63.21 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhcCCccceec---c--------cccc----ccccCCCCCeEEeeccccccchhhHHHHHHHhhcc
Q 002784 470 GNVAVVKYLDEQMSLIMEEP---Y--------EHKY----PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 529 (881)
Q Consensus 470 a~~~ii~~L~~~g~l~~~~~---~--------~h~y----p~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~ 529 (881)
.-..+++.|.++|.+...+. | .-++ |+||+|+.|++++.++|||++++++++.+++.+++
T Consensus 104 ~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~ 178 (648)
T PRK12267 104 VVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEE 178 (648)
T ss_pred HHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhh
Confidence 44678888999987654321 1 1222 89999999999999999999999999999988864
No 107
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=91.25 E-value=0.41 Score=55.58 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=75.1
Q ss_pred CceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCC--------cHHHHHHHHhcccccccCCCh
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHG--------LPIELKVLQSLDEDAKKDLTP 221 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hG--------LPiE~~a~k~l~~~~~~~~~p 221 (881)
..+++-+|. .|+|.+|||+++--+..|++.|--+-+|+.|.+++=||..- ||-....++.++..-..-=+|
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecCc-CCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 568887775 78999999999999999999999999999999999999863 343344445554321111133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 002784 222 SKLRAKAAKFAKATVKAQMASFKRYGVWAD 251 (881)
Q Consensus 222 ~~~~~~~~~~a~~~i~~~~~~f~rlGi~~D 251 (881)
.. .|..|++.+...+.+.+.++|+-..
T Consensus 98 ~G---~~~Sya~hf~~~f~~~l~~~Gi~~E 124 (521)
T COG1384 98 FG---CCDSYAEHFLRPFEEFLDEFGIEVE 124 (521)
T ss_pred cc---ccchHHHHHHHHHHHHHHhcCCceE
Confidence 22 4688999999999999999998655
No 108
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=90.96 E-value=2.3 Score=42.17 Aligned_cols=136 Identities=12% Similarity=0.092 Sum_probs=84.2
Q ss_pred CCCCchHhHHhhhcCCCCceecChhHHHH--------HHHHHHHHhhHHHHHHhcccCCCCCCccCCCCC-CHhHHHHHH
Q 002784 540 GYGADVLRLWVSSVDYTGDVMIGPQVLRQ--------MSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDL-PMIDQYALF 610 (881)
Q Consensus 540 ~yGaD~LRlwvas~~~~~D~~~s~~~l~~--------~~~~~~Kl~Nt~rf~l~nl~~f~~~~~~~~~~l-~~~Dr~il~ 610 (881)
+.|.|++||.+.+.+..+++.|+.+.+-. +.-.+.++.|+++-.-. .......+...-+ .+.++-++.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~---~~~~~~~~~~~ll~~~~E~~L~~ 78 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGE---TIEAEADADLSLLPEPDERDLIL 78 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCC---cCccccccchhhcCCHHHHHHHH
Confidence 57899999999999888888888876421 13446677777665221 0000001111112 345677788
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCChH---HHHHHHHHHHHHHHHHHHHhh
Q 002784 611 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSF---TRRSCQTVLSAHLLSIVRVIA 684 (881)
Q Consensus 611 ~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~~---~r~s~q~vL~~il~~l~~lLa 684 (881)
.+..+.+.+.++..+.+++.++..+.++.. .+.+|| +-+ +.- ..+.. .|......+..++...+.+|.
T Consensus 79 ~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~-~~~~ff-d~v--~V~--~~~~~i~~nRL~Ll~~v~~vl~~~l~llg 149 (156)
T cd07956 79 LLAKFPEVVKNAAETLEPHTIATYLFDLAH-AFSKFY-NAC--PVL--GAEEELRNARLALVAAARQVLANGLDLLG 149 (156)
T ss_pred HHHHhHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHH-hcC--ccc--CCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888988889999999999999999998874 365554 433 211 22322 234444445555666565553
No 109
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.08 E-value=4.4 Score=47.00 Aligned_cols=67 Identities=13% Similarity=0.270 Sum_probs=54.2
Q ss_pred cchHHHHHHHhCCCccccccCCCCCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeec
Q 002784 126 REPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYV 193 (881)
Q Consensus 126 ~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~ 193 (881)
++.-++..|+....|... +...+++-++-.--|+.+-..|+||.++.+++-+++.-++-.|+.|.-+
T Consensus 87 ~k~~l~~i~~~~~~~g~~-~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~ 153 (567)
T KOG1195|consen 87 IKSVLPIIEEQREKYGKN-ELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRV 153 (567)
T ss_pred HHHHHHHHHHHhcccCcc-ccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeeh
Confidence 445566777777777654 2234678889889999999999999999999999999999999998654
No 110
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=82.60 E-value=4.1 Score=46.42 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=47.7
Q ss_pred CCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHH
Q 002784 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (881)
Q Consensus 149 ~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~ 228 (881)
+++|++.+|. -|+|.+||||... -..+.++|. .|+++.+..+=++ . .. .+ ..+++++
T Consensus 64 ~~~~~iytG~-~PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~h-a------~~------~~-~~~~e~~---- 120 (368)
T PRK12285 64 GKPFAVYTGF-MPSGPMHIGHKMV---FDELKWHQE-FGANVYIPIADDE-A------YA------AR-GLSWEET---- 120 (368)
T ss_pred CCCeEEEEcc-CCCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecchH-H------Hh------cC-CCCHHHH----
Confidence 4677777775 4569999999752 345667777 6888776664333 1 11 01 3567665
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCC
Q 002784 229 AKFAKATVKAQMASFKRYGVWADWNN 254 (881)
Q Consensus 229 ~~~a~~~i~~~~~~f~rlGi~~DW~~ 254 (881)
++++.++ ..++..+|+ |.++
T Consensus 121 ~~~~~~~----~~~~lA~G~--Dp~k 140 (368)
T PRK12285 121 REWAYEY----ILDLIALGF--DPDK 140 (368)
T ss_pred HHHHHHH----HHHHHHhCC--Cccc
Confidence 4455544 456678888 6544
No 111
>PLN02286 arginine-tRNA ligase
Probab=79.45 E-value=30 Score=42.06 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=49.2
Q ss_pred CCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHH
Q 002784 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIEL 205 (881)
Q Consensus 149 ~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~ 205 (881)
+++.+|---=|+|+|++||||++|.+|+|+++|-.+..||+|.-..=....|..+-.
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~ 172 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGM 172 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHH
Confidence 367888889999999999999999999999999999999999776666666666654
No 112
>PLN02563 aminoacyl-tRNA ligase
Probab=79.29 E-value=2.1 Score=54.65 Aligned_cols=67 Identities=13% Similarity=0.211 Sum_probs=53.4
Q ss_pred chhHHHHHHHHhcCCccceeccc--------------cccccccCCCCCeEEeeccccccchhhHHHHHHHhhccccccC
Q 002784 469 DGNVAVVKYLDEQMSLIMEEPYE--------------HKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 534 (881)
Q Consensus 469 ~a~~~ii~~L~~~g~l~~~~~~~--------------h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P 534 (881)
.....+...|-++|++...+... -.+++||||+.+++.+...|||+++..+++..++-++...| |
T Consensus 212 ~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~w-p 290 (963)
T PLN02563 212 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDW-P 290 (963)
T ss_pred HHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCC-C
Confidence 45567778888899876654432 13678999999999999999999999999999999987774 6
Q ss_pred CC
Q 002784 535 PQ 536 (881)
Q Consensus 535 ~~ 536 (881)
+.
T Consensus 291 ~~ 292 (963)
T PLN02563 291 ES 292 (963)
T ss_pred HH
Confidence 54
No 113
>PLN02486 aminoacyl-tRNA ligase
Probab=76.49 E-value=9.6 Score=43.70 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=45.1
Q ss_pred CCCceEEecCCCCCCC-cccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHH
Q 002784 148 DGENFVLHDGPPYANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRA 226 (881)
Q Consensus 148 ~~~~f~i~dgPPYaNG-~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~ 226 (881)
.+++|++.+|. -|+| .+||||... -..+..+|...|..+....+ |. | +.+ .++++.+++
T Consensus 70 ~~~~~~vYtG~-~PSg~~lHlGHlv~---~~~~~~lQ~~~~~~~~I~ia-D~-----e-~~~-------~~~~~~e~i-- 129 (383)
T PLN02486 70 KGEKFYLYTGR-GPSSEALHLGHLIP---FMFTKYLQDAFKVPLVIQLT-DD-----E-KFL-------WKNLSVEES-- 129 (383)
T ss_pred cCCCeEEEeCC-CCCCccccHHHHHH---HHHHHHHHHhCCCeEEEEec-CH-----H-HHh-------hcCCCHHHH--
Confidence 35678888875 6788 599999544 44555666666766666544 43 2 222 123667665
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 002784 227 KAAKFAKATVKAQMASFKRYGV 248 (881)
Q Consensus 227 ~~~~~a~~~i~~~~~~f~rlGi 248 (881)
++++.++++ .+..+|+
T Consensus 130 --~~~~~en~~----~iiA~G~ 145 (383)
T PLN02486 130 --QRLARENAK----DIIACGF 145 (383)
T ss_pred --HHHHHHHHH----HHHHhCC
Confidence 555555543 3446775
No 114
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=76.25 E-value=6.3 Score=43.27 Aligned_cols=69 Identities=25% Similarity=0.397 Sum_probs=41.2
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHH
Q 002784 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQ 239 (881)
Q Consensus 160 YaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~~ 239 (881)
-|+|.||+||.+..+.. ..+.|.. |+++.+..+ |-|++ . . ...++++++ +++.+ .
T Consensus 7 ~PTG~lHLG~~~~al~~--~~~lQ~a-g~~~~~~Ia-D~ha~------t---~----~~~~~~~~~----~~~~~----~ 61 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF--WVWLQEA-GYELFFFIA-DLHAL------T---V----KQLDPEELR----QNTRE----N 61 (280)
T ss_pred CCCchhhHHHHHHHHHH--HHHHHhC-CCCEEEEec-chHHH------h---C----CCCCHHHHH----HHHHH----H
Confidence 37899999999886543 3344443 888776654 33333 1 1 124665553 33333 4
Q ss_pred HHHHHHhccccccCCC
Q 002784 240 MASFKRYGVWADWNNP 255 (881)
Q Consensus 240 ~~~f~rlGi~~DW~~~ 255 (881)
..++..+|+ |+++.
T Consensus 62 ~~~~lA~G~--dp~k~ 75 (280)
T cd00806 62 AKDYLACGL--DPEKS 75 (280)
T ss_pred HHHHHHcCC--CcccC
Confidence 566778888 77554
No 115
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=76.10 E-value=3.8 Score=44.68 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=43.2
Q ss_pred CCCC-cccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCc---HHHHHHHHhcccccccCCChHHHHHHHHHHHHHH
Q 002784 160 YANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGL---PIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKAT 235 (881)
Q Consensus 160 YaNG-~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGL---PiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~ 235 (881)
-|+| .+|+||.+. + -.+.|+++. |++|.+.-| |-|++ |.- +.+.+...++++++ +.
T Consensus 8 ~PTg~~lHLG~~~~-~--~~~~~lq~~-g~~~~ilI~-D~~a~~~~~~~-------~~~~r~~~~~~~i~----~~---- 67 (269)
T cd00805 8 DPTAPSLHLGHLVP-L--MKLRDFQQA-GHEVIVLIG-DATAMIGDPSG-------KSEERKLLDLELIR----EN---- 67 (269)
T ss_pred CCCCCcccHHHHHH-H--HHHHHHHHC-CCeEEEEEC-CCeeecCCCCC-------ccccccCCCHHHHH----HH----
Confidence 3789 899999884 3 367788876 988877665 33333 211 11223345665553 33
Q ss_pred HHHHHHHHHHhcccc
Q 002784 236 VKAQMASFKRYGVWA 250 (881)
Q Consensus 236 i~~~~~~f~rlGi~~ 250 (881)
...++.++..+|...
T Consensus 68 ~~~~~~~~~a~g~~~ 82 (269)
T cd00805 68 AKYYKKQLKAILDFI 82 (269)
T ss_pred HHHHHHHHHHHHccC
Confidence 334577888888743
No 116
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=75.62 E-value=4.4 Score=44.33 Aligned_cols=71 Identities=15% Similarity=0.293 Sum_probs=39.6
Q ss_pred CCC-cccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHH
Q 002784 161 ANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQ 239 (881)
Q Consensus 161 aNG-~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~~ 239 (881)
|+| .||+||.+. -....++|. .|+++.+..| |-|++=. ....+...+.-++++++ .+++...
T Consensus 8 PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~-d~~a~~~----d~sg~~~~r~~~~~~~i--------~~n~~~~ 70 (273)
T cd00395 8 PTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIG-GQTGIIG----DPSGKKSERTLNDPEEV--------RQNIRRI 70 (273)
T ss_pred CCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEe-cCceeeC----CCCCccccccCCCHHHH--------HHHHHHH
Confidence 789 699999887 234446665 5888877665 3333311 00000111222355433 2334456
Q ss_pred HHHHHHhcc
Q 002784 240 MASFKRYGV 248 (881)
Q Consensus 240 ~~~f~rlGi 248 (881)
..++.++|+
T Consensus 71 ~~~~~a~g~ 79 (273)
T cd00395 71 AAQYLAVGI 79 (273)
T ss_pred HHHHHHhcC
Confidence 778889997
No 117
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=75.33 E-value=3.1 Score=46.47 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=48.0
Q ss_pred hHHHHHHHHhcCCccceeccccccccccCCCCCe-EEeeccccccchhhHHHHHHHhhcccc--ccCC
Q 002784 471 NVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPT-IFRATEQWFASVEGFRQAAMDAIGQVK--WVPP 535 (881)
Q Consensus 471 ~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pi-i~r~t~QWFi~~~~lk~~al~~i~~v~--~~P~ 535 (881)
-..+++.|.++|.+...+ +.-++|-+|++.+ +++.++|||.++.++++.+++.+++.. ++|+
T Consensus 101 v~~i~~~L~ekG~iY~~~---~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~ 165 (319)
T cd00814 101 VQEFFKKLYENGYIYEGE---YEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPE 165 (319)
T ss_pred HHHHHHHHHHCCCEEeee---eeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCH
Confidence 457888999999875432 3345788888777 899999999999999999999887433 4554
No 118
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=75.20 E-value=2.8 Score=53.08 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=51.8
Q ss_pred chhHHHHHHHHhcCCccceeccc---------------cccccccCCCCCeEEeeccccccchhhHHHHHHHhhcccccc
Q 002784 469 DGNVAVVKYLDEQMSLIMEEPYE---------------HKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWV 533 (881)
Q Consensus 469 ~a~~~ii~~L~~~g~l~~~~~~~---------------h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~ 533 (881)
+....+...|-++|++...+... +...+||||+.+++.+..+|||+++..+++.+++.++.....
T Consensus 130 ~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~w 209 (842)
T TIGR00396 130 KWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHW 209 (842)
T ss_pred HHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccc
Confidence 34455667788888765443221 122689999999999999999999999999999988877766
Q ss_pred CCC
Q 002784 534 PPQ 536 (881)
Q Consensus 534 P~~ 536 (881)
|+.
T Consensus 210 p~~ 212 (842)
T TIGR00396 210 PES 212 (842)
T ss_pred cHH
Confidence 764
No 119
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.50 E-value=1.7 Score=51.00 Aligned_cols=20 Identities=50% Similarity=0.698 Sum_probs=16.7
Q ss_pred eEEecCCCCCCCcccchHHH
Q 002784 152 FVLHDGPPYANGNLHMGHAL 171 (881)
Q Consensus 152 f~i~dgPPYaNG~lHiGHal 171 (881)
-+.+-=||=|||.||||||-
T Consensus 248 kV~TRFPPEPNG~LHIGHaK 267 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAK 267 (764)
T ss_pred eeEEeCCCCCCceeeecchh
Confidence 35566799999999999984
No 120
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=71.50 E-value=2.8 Score=51.75 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=31.7
Q ss_pred ccccCCCCCeEEeeccccccchhhHHHHHHHhhc
Q 002784 495 PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG 528 (881)
Q Consensus 495 p~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~ 528 (881)
|+|++|+.|++++.++|||++++.+++.+++.++
T Consensus 170 ~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~ 203 (673)
T PRK00133 170 PKSAISGATPVLKESEHFFFKLPRFEEFLKEWIT 203 (673)
T ss_pred CccccCCCcceEEecceEEEEHHHHHHHHHHHHh
Confidence 8899999999999999999999999988888875
No 121
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=71.48 E-value=2.9 Score=48.68 Aligned_cols=67 Identities=27% Similarity=0.443 Sum_probs=40.5
Q ss_pred EEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHH
Q 002784 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (881)
Q Consensus 153 ~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a 232 (881)
+++-=||=|||.||||||....| +-|.... |+=-.++-||.+ +|+ +=.
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALL----NqYfa~~-~~G~LIvRFDDT--------------------NPa-------KE~ 248 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALL----NQYFAQA-YQGKLIVRFDDT--------------------NPA-------KEN 248 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHH----HHHHHHh-cCceEEEEecCC--------------------Ccc-------hhh
Confidence 45556999999999999987665 3333322 222233444543 231 112
Q ss_pred HHHHHHHHHHHHHhccccc
Q 002784 233 KATVKAQMASFKRYGVWAD 251 (881)
Q Consensus 233 ~~~i~~~~~~f~rlGi~~D 251 (881)
.++.+.+.+++.-|||-.|
T Consensus 249 ~eFe~~IleDl~~LgIkpd 267 (712)
T KOG1147|consen 249 EEFEDVILEDLSLLGIKPD 267 (712)
T ss_pred HHHHHHHHHHHHHhCcCcc
Confidence 2344557888889999666
No 122
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.54 E-value=4.2 Score=46.16 Aligned_cols=59 Identities=19% Similarity=0.181 Sum_probs=47.5
Q ss_pred CCceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeec-----cCcCCCCcHHHHHHH
Q 002784 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYV-----PGWDCHGLPIELKVL 208 (881)
Q Consensus 149 ~~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~-----pGwD~hGLPiE~~a~ 208 (881)
.++-++...-|+.--.+|+||.++.|++|-++|-....|++|+.+ ||+ -+|+=|+.-.+
T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGT-QFGMLIahL~d 250 (656)
T KOG4426|consen 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGT-QFGMLIAHLFD 250 (656)
T ss_pred eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHH-HHHHHHHHHHH
Confidence 455666678899888999999999999999999999999999865 343 35777776544
No 123
>PLN02610 probable methionyl-tRNA synthetase
Probab=64.01 E-value=5.6 Score=50.02 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=37.0
Q ss_pred eccccccccccCCCCCeEEeeccccccchhhHHHHHHHhhcc
Q 002784 488 EPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 529 (881)
Q Consensus 488 ~~~~h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~ 529 (881)
++..+..|+|++|+.|+++|.+++||.+++.+++.+++.++.
T Consensus 181 ~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~ 222 (801)
T PLN02610 181 NPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINE 222 (801)
T ss_pred ChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHh
Confidence 344567799999999999999999999999999999988864
No 124
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.02 E-value=6.8 Score=48.89 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=50.2
Q ss_pred hHHHHHHHHhcCCccceeccc------------cc--cccccCCCCCeEEeeccccccchhhHHHHHHHhhcccc-ccCC
Q 002784 471 NVAVVKYLDEQMSLIMEEPYE------------HK--YPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVK-WVPP 535 (881)
Q Consensus 471 ~~~ii~~L~~~g~l~~~~~~~------------h~--yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~-~~P~ 535 (881)
.+-+.-.|.++|++...+... |. -..||||+.||..+--.|||+++.+..+.+++.+..+. ..|+
T Consensus 137 ~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE 216 (814)
T COG0495 137 IQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPE 216 (814)
T ss_pred HHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCch
Confidence 455667788999876654332 22 23589999999999999999999999999988877665 3466
Q ss_pred C
Q 002784 536 Q 536 (881)
Q Consensus 536 ~ 536 (881)
.
T Consensus 217 ~ 217 (814)
T COG0495 217 T 217 (814)
T ss_pred h
Confidence 5
No 125
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=60.86 E-value=8.1 Score=48.81 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=48.1
Q ss_pred chhHHHHHHHHhcCCccceeccc--------------cccccccCCCCCeEEeeccccccchhhHHHHHHHhhccc
Q 002784 469 DGNVAVVKYLDEQMSLIMEEPYE--------------HKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQV 530 (881)
Q Consensus 469 ~a~~~ii~~L~~~g~l~~~~~~~--------------h~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v 530 (881)
+....+...|-++|++...+... -..++||||+.|++.+.++|||+++.++++..++.++.+
T Consensus 133 ~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~ 208 (805)
T PRK00390 133 KWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKL 208 (805)
T ss_pred HHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhh
Confidence 45566778888888776544331 124789999999999999999999999999888887654
No 126
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=57.32 E-value=8.3 Score=43.02 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=41.3
Q ss_pred chhHHHHHHHHhcCCccceeccccccccccCCCCCeEEeeccccccch--hhHHHHHHHhhccccccCCC
Q 002784 469 DGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASV--EGFRQAAMDAIGQVKWVPPQ 536 (881)
Q Consensus 469 ~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wRt~~Pii~r~t~QWFi~~--~~lk~~al~~i~~v~~~P~~ 536 (881)
+....++..|.++|.+...+. ...+| +.++|||+++ +++++.+.+.++...+.|+.
T Consensus 101 ~~v~~~f~~L~~~G~iy~~~~---~v~~~---------~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~ 158 (314)
T cd00812 101 KFTQWLFLKLYEKGLAYKKEA---PVNWC---------KLLDQWFLKYSETEWKEKLLKDLEKLDGWPEE 158 (314)
T ss_pred HHHHHHHHHHHHCCCEEecCc---eeeee---------CccceEEEEcCcHHHHHHHHHHHHhcCcCCHH
Confidence 344556678999998765432 22333 7899999999 99999999999877766653
No 127
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=56.25 E-value=96 Score=28.74 Aligned_cols=79 Identities=13% Similarity=0.160 Sum_probs=52.6
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhHHHHHHhhccccCCCCCh--HHHHHHHHHHHHHHHHH
Q 002784 602 PMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTS--FTRRSCQTVLSAHLLSI 679 (881)
Q Consensus 602 ~~~Dr~il~~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl~~~KdrLy~~~~~~--~~r~s~q~vL~~il~~l 679 (881)
.+.++-++..+..+...+.++++.++.+.+++.++++.. .+++|| +.. +...+.... ..|-........++...
T Consensus 32 ~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~-~f~~fy-~~~--~I~~~~~~~~~~~RL~Ll~~v~~vl~~~ 107 (119)
T PF05746_consen 32 EEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQ-AFNSFY-DNV--RILDEDEEIRKNNRLALLKAVRQVLKNG 107 (119)
T ss_dssp SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHH-HHHHHH-HHS---STTSTTCHH-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHH-hhc--cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999998874 477776 432 333333221 23444444455556655
Q ss_pred HHHhh
Q 002784 680 VRVIA 684 (881)
Q Consensus 680 ~~lLa 684 (881)
+.+|.
T Consensus 108 l~llg 112 (119)
T PF05746_consen 108 LDLLG 112 (119)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 55554
No 128
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=56.25 E-value=22 Score=41.28 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=28.0
Q ss_pred CceEEecCCCCCCC-cccchHHHHHHHHHHHHHHHHhCCCeeeeccC
Q 002784 150 ENFVLHDGPPYANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (881)
Q Consensus 150 ~~f~i~dgPPYaNG-~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pG 195 (881)
+++.+..|. -|+| .||+||.+. -..+.++|. .|+++.++.|
T Consensus 32 ~~~~vy~G~-dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~lig 73 (408)
T PRK05912 32 EPLRIYLGF-DPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIG 73 (408)
T ss_pred CCCEEEEee-cCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEc
Confidence 445566664 5788 499999883 245656665 6888877765
No 129
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=52.34 E-value=6 Score=32.45 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=22.9
Q ss_pred CCCCCCCccceecCCCCCCCCCCCChhhHHHhccCCcc
Q 002784 838 EGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIP 875 (881)
Q Consensus 838 ~~~KC~RCW~~~~~v~~~~~~~~lC~RC~~vl~~~~~~ 875 (881)
.-.||++|-.|+-. +.|+.|-.......|+
T Consensus 4 ~~rkC~~cg~YTLk--------e~Cp~CG~~t~~~~Pp 33 (59)
T COG2260 4 LIRKCPKCGRYTLK--------EKCPVCGGDTKVPHPP 33 (59)
T ss_pred hhhcCcCCCceeec--------ccCCCCCCccccCCCC
Confidence 45799999999873 6899997776655444
No 130
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=50.16 E-value=12 Score=41.29 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=57.2
Q ss_pred cCCCceeccchhHHHHHHHHhcCCccceeccccccccccC--------CCCCeEEe--eccccccchhhHHHHHHHhhcc
Q 002784 460 KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWR--------TKKPTIFR--ATEQWFASVEGFRQAAMDAIGQ 529 (881)
Q Consensus 460 ~~~G~~v~~~a~~~ii~~L~~~g~l~~~~~~~h~yp~~wR--------t~~Pii~r--~t~QWFi~~~~lk~~al~~i~~ 529 (881)
...|.++ |+...+.+.|.. .+-++.....+.+||.-. +++|..-. -+.+-.++-++|.++.-+.+.
T Consensus 187 GRPGWHi--ECsam~~~~lG~-~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W~H~g~l~~~g~KMSKSlgN~~~- 262 (300)
T PF01406_consen 187 GRPGWHI--ECSAMSMKYLGD-TFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYWMHNGHLNVDGEKMSKSLGNFIT- 262 (300)
T ss_dssp EEE-HHH--HHHHHHHHHHTT-SEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEEEEE--EEETTCE--TTTT---B-
T ss_pred CcCceee--ehHHHHHHHcCC-CceEEccccccCCCCccchHHHHHHhhCchHHHHHHHHHHHhhcCccccccCCCEEE-
Confidence 3457777 677777777764 366777777888898421 33443211 111111222355544433222
Q ss_pred ccccCCCCCCCCCCchHhHHhhhcCCCCceecChhHHHHHH
Q 002784 530 VKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMS 570 (881)
Q Consensus 530 v~~~P~~~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~ 570 (881)
+.+ ...+|+++++|||++++-|.+.++|+++.|+++.
T Consensus 263 ---i~d-ll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~ 299 (300)
T PF01406_consen 263 ---IRD-LLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAK 299 (300)
T ss_dssp ---HHH-HHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH
T ss_pred ---HHH-HhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhc
Confidence 111 3357999999999999999999999999988754
No 131
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=49.80 E-value=2.7 Score=48.21 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=27.7
Q ss_pred hhHHHHHHHhhccccccCCCCCCCCCCchHhHHhhhc-CCCCceec
Q 002784 517 EGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYTGDVMI 561 (881)
Q Consensus 517 ~~lk~~al~~i~~v~~~P~~~~~~yGaD~LRlwvas~-~~~~D~~~ 561 (881)
.+|+++.-+.+. |...+++||+|++|||+++. ++++|.+|
T Consensus 342 ~KMSKS~Gn~v~-----~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 342 RKMSKSLGNVID-----PLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred CCccccCCCCCC-----HHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 356665544443 44456789999999998765 57788765
No 132
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=48.54 E-value=15 Score=42.06 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=29.4
Q ss_pred ceEEecCCCCCCC-cccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCc
Q 002784 151 NFVLHDGPPYANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGL 201 (881)
Q Consensus 151 ~f~i~dgPPYaNG-~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGL 201 (881)
++.+..|+ -|+| .||+||.+. + -.+.++|+ .|++|.++.| |.||+
T Consensus 30 ~~~vy~G~-dPTg~~lHlGh~v~-l--~~l~~lq~-~G~~~~ilig-d~ta~ 75 (377)
T TIGR00234 30 KIKLYVGF-DPTAPSLHLGHLVP-L--LKLRDFQQ-AGHEVIVLLG-DATAL 75 (377)
T ss_pred CCEEEEee-CCCCCCccHHHHHH-H--HHHHHHHH-CCCcEEEEEe-ccchh
Confidence 34455554 4689 899999874 2 23556666 6998877764 45544
No 133
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.45 E-value=9.4 Score=45.86 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=43.6
Q ss_pred hHHHHHHHHhcCCccceecccc---------------ccccccCCCCCeEEeeccccccchhhHHHHHHHhhccc
Q 002784 471 NVAVVKYLDEQMSLIMEEPYEH---------------KYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQV 530 (881)
Q Consensus 471 ~~~ii~~L~~~g~l~~~~~~~h---------------~yp~~wRt~~Pii~r~t~QWFi~~~~lk~~al~~i~~v 530 (881)
..-|.-.|-+.|+....|.-.. .....||++.+++-....|||+++..+.+++++.++..
T Consensus 160 TQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L 234 (876)
T KOG0435|consen 160 TQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETL 234 (876)
T ss_pred HHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 3445555666666554443322 23457999999999999999999999999999888743
No 134
>PLN02886 aminoacyl-tRNA ligase
Probab=45.80 E-value=38 Score=38.89 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=19.8
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHhCCCeeeecc
Q 002784 161 ANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194 (881)
Q Consensus 161 aNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~p 194 (881)
|+|.+||||.+..+ + =.+++|. |+++.|..
T Consensus 55 PSG~lHLGnylGai-~-~~v~lQ~--~~~~~~~I 84 (389)
T PLN02886 55 PTGSIHLGNYLGAI-K-NWVALQE--TYDTFFCV 84 (389)
T ss_pred CCCccHHHHHHHHH-H-HHHHHhc--cCCEEEEE
Confidence 57999999977665 2 2334554 88775543
No 135
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=44.97 E-value=10 Score=39.82 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=23.6
Q ss_pred CCCCCCCCCCchHhHHhhhcCCCCceecC
Q 002784 534 PPQEAPGYGADVLRLWVSSVDYTGDVMIG 562 (881)
Q Consensus 534 P~~~~~~yGaD~LRlwvas~~~~~D~~~s 562 (881)
|...+++||+|++|||+++..+.++++|+
T Consensus 185 ~~dll~~~~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 185 VRDALKKYDPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred HHHHHHHcCHHHHHHHHHhCCcCCCCCCC
Confidence 33355689999999999999999888774
No 136
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=41.76 E-value=23 Score=39.85 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=26.3
Q ss_pred CceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccC
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pG 195 (881)
+++++.+|. -|+|.+||||.. .+.+ +.++|.. |+++.+..|
T Consensus 29 ~~~~v~~G~-~PTG~lHLG~~~-~~~~--~~~lq~~-g~~~~i~Ia 69 (329)
T PRK08560 29 EEPKAYIGF-EPSGKIHLGHLL-TMNK--LADLQKA-GFKVTVLLA 69 (329)
T ss_pred CCCEEEEcc-CCCCcchhhhhH-HHHH--HHHHHHC-CCeEEEEEc
Confidence 445555554 578999999955 3333 6677774 877655443
No 137
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=41.20 E-value=53 Score=38.20 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=23.0
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCC
Q 002784 161 ANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCH 199 (881)
Q Consensus 161 aNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~h 199 (881)
|+|.|||||.+..+- -. ++.+...|+++.|... |-|
T Consensus 11 PTG~lHLGNylGaik-~~-v~lq~q~~~~~~~~IA-DlH 46 (431)
T PRK12284 11 TTGTPHLGNYAGAIR-PA-IAASRQPGVESFYFLA-DYH 46 (431)
T ss_pred CCCcchHHHHHHHHH-HH-HHHHHhCCCcEEEEee-chh
Confidence 789999999666543 22 2444445888766542 444
No 138
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=40.81 E-value=23 Score=40.17 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=30.6
Q ss_pred CCCCCCCCCCchHhHHhhhcC-CCCceecChhHHHHHHHHHHHHhhH
Q 002784 534 PPQEAPGYGADVLRLWVSSVD-YTGDVMIGPQVLRQMSDIYRKLRGT 579 (881)
Q Consensus 534 P~~~~~~yGaD~LRlwvas~~-~~~D~~~s~~~l~~~~~~~~Kl~Nt 579 (881)
|...+..+|+|+||||+++.. ...|+.|+.++.+ ..+-+.++.+.
T Consensus 286 ~~dll~~~~~dalR~~~l~~~~~~~~i~Fd~~~~~-~~dey~r~~~~ 331 (353)
T cd00674 286 PSDWLEVAPPEVLRYLYARRKNPEKHIGFDLDILR-LYDEYDRLERK 331 (353)
T ss_pred HHHHHHHhChHHHHHHHHhCCCCCCCCCcChhHHH-HHHHHHHHHHH
Confidence 333455799999999998766 6779999986443 34445554443
No 139
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=39.81 E-value=25 Score=38.62 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=26.5
Q ss_pred CceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccC
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pG 195 (881)
+++.+.+|. =|+|.+||||.... ..+.++|+ .|++|.+..|
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i~ia 44 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVPI---MKLIWLQK-AGFKVIILIA 44 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHHH---HHHHHHHH-TTSEEEEEEE
T ss_pred CCcEEEEeE-CCCCcccchHHHHH---HHHHHHHh-cCCccceEec
Confidence 345555553 36899999987654 34455555 8999887775
No 140
>KOG1779 consensus 40s ribosomal protein S27 [Translation, ribosomal structure and biogenesis]
Probab=38.90 E-value=5.9 Score=34.33 Aligned_cols=29 Identities=31% Similarity=0.695 Sum_probs=23.0
Q ss_pred CCCCCccceecCCCCCCCCCCCChhhHHHh
Q 002784 840 SKCERCWNYSTQVGSFVEHPTLCSRCYEVL 869 (881)
Q Consensus 840 ~KC~RCW~~~~~v~~~~~~~~lC~RC~~vl 869 (881)
.||++|.+.+. |=++..-.-+|.-|..++
T Consensus 35 VkC~gc~~iT~-vfSHaqtvVvc~~c~~il 63 (84)
T KOG1779|consen 35 VKCPGCFKITT-VFSHAQTVVVCEGCSTIL 63 (84)
T ss_pred EEcCCceEEEE-EeecCceEEEcCCCceEE
Confidence 48999999986 555555567999999886
No 141
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=38.46 E-value=65 Score=37.13 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=34.5
Q ss_pred CCCcccchHHHHHHHHHHHHHHHH-hCCCeeeeccCcCCCCcHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHH
Q 002784 161 ANGNLHMGHALNKILKDIINRYKL-LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQ 239 (881)
Q Consensus 161 aNG~lHiGHaln~ilkDii~Ry~r-m~G~~V~~~pGwD~hGLPiE~~a~k~l~~~~~~~~~p~~~~~~~~~~a~~~i~~~ 239 (881)
|+|.+||||.+..+ + .|.. ..|+++.|.. -|-| +.-. ...++.++++ .+.+ .
T Consensus 11 PSG~~HLGnylG~i-k----~wv~lq~~~~~~~~I-ADlH-------Alt~------~~~d~~~ir~----~~~~----~ 63 (398)
T PRK12283 11 PTGRLHLGHYHGVL-K----NWVKLQHEYECFFFV-ADWH-------ALTT------HYETPEVIEK----NVWD----M 63 (398)
T ss_pred CCCcchHHHHHHHH-H----HHHHHhcCCcEEEEe-ecHH-------HHhC------CCCCHHHHHH----HHHH----H
Confidence 68999999998843 4 3333 3577765543 2332 2210 1136666643 3333 4
Q ss_pred HHHHHHhcc
Q 002784 240 MASFKRYGV 248 (881)
Q Consensus 240 ~~~f~rlGi 248 (881)
...+..+|+
T Consensus 64 ~a~~lA~Gl 72 (398)
T PRK12283 64 VIDWLAAGV 72 (398)
T ss_pred HHHHHHcCC
Confidence 566778998
No 142
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.45 E-value=31 Score=37.56 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=22.2
Q ss_pred CCCceEEecCCCCCCCcccchHHHHHH
Q 002784 148 DGENFVLHDGPPYANGNLHMGHALNKI 174 (881)
Q Consensus 148 ~~~~f~i~dgPPYaNG~lHiGHaln~i 174 (881)
.+++||+.+|----++.+|+||..-.+
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHliPFi 108 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLIPFI 108 (397)
T ss_pred cCCceEEEeCCCCCccccccccchhHH
Confidence 357899999987789999999976544
No 143
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=37.44 E-value=25 Score=39.59 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=21.4
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHhCCCeeeecc
Q 002784 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194 (881)
Q Consensus 160 YaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~p 194 (881)
-|+|.+|+||.+..+.+ +.++|. +++|.+..
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~I 39 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQD--EYECFFCI 39 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHHh--cCCeEEEE
Confidence 37899999998876543 445555 36766555
No 144
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=35.91 E-value=36 Score=40.70 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=35.9
Q ss_pred CCCCCCchHhHHhhhcCCCCceecChhHHHHHHHHHHHHhhHHH
Q 002784 538 APGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLR 581 (881)
Q Consensus 538 ~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~r 581 (881)
++.+|+|++||++++..+.++++|+.+.+ ++.+.|.++...+.
T Consensus 289 l~~~~pdalR~~~l~~~~~~~ldFd~~~l-~~~dey~r~~~~~~ 331 (515)
T TIGR00467 289 LEVYTPEITRFLFARTKPEFHISFDLDVI-KLYEDYDKFERFYY 331 (515)
T ss_pred HHHcCHHHHHHHHhccCCCCCCcCCHHHH-HHHHHHHHHHHHHH
Confidence 35689999999999999999999999988 77777777765553
No 145
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=35.49 E-value=65 Score=37.42 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=27.4
Q ss_pred CCceEEecCCCCCCC-cccchHHHHHHHHHHHHHHHHhCCCeeeeccC
Q 002784 149 GENFVLHDGPPYANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (881)
Q Consensus 149 ~~~f~i~dgPPYaNG-~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pG 195 (881)
++++.+..|. -|+| .||+||... +. .+.++|. .|+++.++.|
T Consensus 31 ~~~~~iy~G~-dPT~~sLHlGhlv~-l~--~l~~lq~-~G~~~~~lig 73 (410)
T PRK13354 31 GKPLTLYLGF-DPTAPSLHIGHLVP-LM--KLKRFQD-AGHRPVILIG 73 (410)
T ss_pred CCCcEEEEcc-cCCCCCcchhhHHH-HH--HHHHHHH-cCCeEEEEEc
Confidence 3456666664 5788 599999554 22 3445554 7888877776
No 146
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.47 E-value=1e+02 Score=35.72 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=24.9
Q ss_pred CCC-cccchHHHHHHHHHHHHHHHHhCCCeeeeccCcCCCCc
Q 002784 161 ANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGL 201 (881)
Q Consensus 161 aNG-~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pGwD~hGL 201 (881)
|+| +||+||...- -.+.|+|. .|++|....| |-||+
T Consensus 41 PTa~slHlGhlv~l---~kL~~fQ~-aGh~~ivLig-d~ta~ 77 (401)
T COG0162 41 PTAPSLHLGHLVPL---MKLRRFQD-AGHKPIVLIG-DATAM 77 (401)
T ss_pred CCCCccchhhHHHH---HHHHHHHH-CCCeEEEEec-cccee
Confidence 588 8999998653 23445544 6999988887 45553
No 147
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=29.83 E-value=2.2e+02 Score=28.52 Aligned_cols=102 Identities=16% Similarity=0.241 Sum_probs=40.8
Q ss_pred CCCCeEEeeccccccchhhHHHHHHHhhccccccCCCCCCCCCCchHhHHhhhcCCCCceecChhHHHHHHHHHHHHh--
Q 002784 500 TKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLR-- 577 (881)
Q Consensus 500 t~~Pii~r~t~QWFi~~~~lk~~al~~i~~v~~~P~~~~~~yGaD~LRlwvas~~~~~D~~~s~~~l~~~~~~~~Kl~-- 577 (881)
.++-++|.++||||.. ..+...+... .|+.+.+-=|+.+.+. +.+.=+.+++.+..+.
T Consensus 23 k~KK~V~iiSPQWF~k-~G~~~~aF~~-------------~fS~~q~~~fl~n~~i------s~~~k~~~AkRlL~~~~~ 82 (163)
T PF04918_consen 23 KNKKAVFIISPQWFTK-KGVDPDAFQS-------------YFSPLQAYNFLFNPKI------SDETKRYAAKRLLELPSD 82 (163)
T ss_dssp TT-EEEEE--GGG--T-T-S-HHHHHH-------------H--HHHHHHHHHH---------SSHHHHHHHHHHHHH-TT
T ss_pred cCCcEEEEECCcccCC-CCcCHHHHHH-------------hcCHHHHHHHHHCCCC------CcHHHHHHHHHHHhhccc
Confidence 4567899999999995 3444554432 3555555555544332 2222222222222222
Q ss_pred hHHHHHHhcccCCCCCCccCCCCCCHhHHHHHHHHHHHHHHHHHHHhccChH
Q 002784 578 GTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFF 629 (881)
Q Consensus 578 Nt~rf~l~nl~~f~~~~~~~~~~l~~~Dr~il~~l~~li~~v~~~ye~y~f~ 629 (881)
.++.-++.++. ....++..|++.+.....+.+.-...+..+.+.
T Consensus 83 ~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~l~~~d~l~s~~~~~ 126 (163)
T PF04918_consen 83 VTLKNLLKKIA--------KGKKLSSFDRWYLRLRYRLLEKEDALFSKFSLK 126 (163)
T ss_dssp -TTHHHHHHHH--------TT----HHHHHHHHHHHHHHHHHHHHHTTC--T
T ss_pred HHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 11111122111 112356788888877777666555555555555
No 148
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=28.88 E-value=40 Score=37.91 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=24.9
Q ss_pred EEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccC
Q 002784 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (881)
Q Consensus 153 ~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pG 195 (881)
.+..|. -|+|.+||||.+..+.. ++....|+++.+..+
T Consensus 4 ~v~~G~-~PTG~~HlG~~l~~~~~----~~~~q~~~~~~i~Ia 41 (328)
T TIGR00233 4 RVLTGI-QPSGKMHLGHYLGAIQT----KWLQQFGVELFICIA 41 (328)
T ss_pred EEEEee-CCCcHhHHHHHHHHHHH----HHHHhCCCCEEEEee
Confidence 344443 57899999998776553 333356888776654
No 149
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=28.78 E-value=49 Score=39.57 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=32.2
Q ss_pred CCCCCCCchHhHHhh-hcCCCCceecChhHHHHHHHHHHHHhhHH
Q 002784 537 EAPGYGADVLRLWVS-SVDYTGDVMIGPQVLRQMSDIYRKLRGTL 580 (881)
Q Consensus 537 ~~~~yGaD~LRlwva-s~~~~~D~~~s~~~l~~~~~~~~Kl~Nt~ 580 (881)
.+..||+|++|||+. +..+.+|+.|+. +.++.+.|.++...+
T Consensus 294 ~l~~~~pd~lR~~l~~~~~~~~~~~f~~--l~~~~dey~rl~~~~ 336 (510)
T PRK00750 294 WLEYAPPESLRLFMFARPKPAKRLDFDV--IPKLVDEYDRFERKY 336 (510)
T ss_pred HHHHCCHHHHHHHHHhCCCCCCCCcccH--HHHHHHHHHHHHHHH
Confidence 445799999998876 667888999998 666677777776544
No 150
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.58 E-value=49 Score=36.88 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=27.4
Q ss_pred CceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCC-eeeecc
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNY-KVRYVP 194 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~-~V~~~p 194 (881)
.++.+.+|. -|+|.+||||.+..+. .+++...++ ++.|.-
T Consensus 4 ~~~~vlSG~-~PSG~lHLGny~ga~~----~~v~~q~~~~~~f~~I 44 (314)
T COG0180 4 KKFRVLSGI-QPSGKLHLGNYLGAIR----NWVLLQEEYYECFFFI 44 (314)
T ss_pred CCceEEecC-CCCCCcchhHhHHHHH----HHHHHhcccCceEEEE
Confidence 345555664 5799999999987654 466666674 766654
No 151
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=26.56 E-value=62 Score=36.49 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=19.4
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHhCCCeeeecc
Q 002784 161 ANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194 (881)
Q Consensus 161 aNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~p 194 (881)
|+|.+|+||.++.+.. ..+.+.-.|.++.|..
T Consensus 12 PTG~~HLGnylga~k~--~~~lq~~~~~~~~~~I 43 (332)
T PRK12556 12 PTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFI 43 (332)
T ss_pred CCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEE
Confidence 6899999997664432 2233443466565554
No 152
>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. In eukaryotes Nop10 is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10 is probably necessary for the stability of these RNPs [].; PDB: 2RFK_B 3LWR_B 2HVY_C 3HAX_C 3MQK_B 3LWO_B 3LWV_B 3HAY_C 3HJY_B 2EY4_E ....
Probab=25.95 E-value=19 Score=29.16 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=19.5
Q ss_pred CCCCCccceecCCCCCCCCCCCChhhHHHhccCCc
Q 002784 840 SKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPI 874 (881)
Q Consensus 840 ~KC~RCW~~~~~v~~~~~~~~lC~RC~~vl~~~~~ 874 (881)
.+|++|+.|+-. +.|+.|-......-|
T Consensus 6 r~c~~~~~YTLk--------~~cp~cG~~T~~ahP 32 (53)
T PF04135_consen 6 RKCPGCRVYTLK--------DKCPPCGGPTESAHP 32 (53)
T ss_dssp EECTTTCEEESS--------SBBTTTSSBSEESSS
T ss_pred ccCCCCCcEeCC--------CccCCCCCCCcCCcC
Confidence 479999999873 478888766544443
No 153
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=24.95 E-value=31 Score=38.48 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=25.6
Q ss_pred CCCCCCCccceecCCCCCCCCCCCChhhHHHhcc
Q 002784 838 EGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAV 871 (881)
Q Consensus 838 ~~~KC~RCW~~~~~v~~~~~~~~lC~RC~~vl~~ 871 (881)
.-..|..|+.|.++ ...|-.+|+||....++
T Consensus 108 ~~~~C~~C~~~KP~---RS~HC~~Cn~CV~k~DH 138 (309)
T COG5273 108 TENFCSTCNIYKPP---RSHHCSICNRCVLKFDH 138 (309)
T ss_pred cceeccccccccCC---CCccchhhcchhhccCc
Confidence 34789999999985 45788999999987764
No 154
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=24.35 E-value=59 Score=37.39 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=23.1
Q ss_pred CceEEecCCCCCCCcccchHHHHHHHHHHHHHHHHhCCCeeeeccC
Q 002784 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (881)
Q Consensus 150 ~~f~i~dgPPYaNG~lHiGHaln~ilkDii~Ry~rm~G~~V~~~pG 195 (881)
+++.+..|. =|+|.+||||..-+. --+.+++. .|++|.+..|
T Consensus 65 ~~~~v~~G~-~PTG~lHLG~g~i~~--~~~~~lq~-~G~~v~~~Ia 106 (383)
T PTZ00126 65 ERPICYDGF-EPSGRMHIAQGILKA--INVNKLTK-AGCVFVFWVA 106 (383)
T ss_pred CCCEEEEEE-CCCCcccccchHhHh--HHHHHHHh-CCCeEEEEEc
Confidence 344444443 468999999932221 12223443 3888776654
No 155
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=20.57 E-value=64 Score=21.98 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=15.7
Q ss_pred CCCCCccceecCCCCCCCCCCCChhhH
Q 002784 840 SKCERCWNYSTQVGSFVEHPTLCSRCY 866 (881)
Q Consensus 840 ~KC~RCW~~~~~v~~~~~~~~lC~RC~ 866 (881)
..||.|-.... .+...|+.|-
T Consensus 3 ~~Cp~Cg~~~~------~~~~fC~~CG 23 (26)
T PF13248_consen 3 MFCPNCGAEID------PDAKFCPNCG 23 (26)
T ss_pred CCCcccCCcCC------cccccChhhC
Confidence 57999998433 3568999994
Done!