Query 002784
Match_columns 881
No_of_seqs 314 out of 2719
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 18:25:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002784.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1497-1501//hhsearch_pdb/002784hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ffy_A Isoleucyl-tRNA syntheta 1.0 1 1 1288.3 35.6 702 105-870 2-914 (917)
2 1gax_A Valrs, valyl-tRNA synth 1.0 1 1 972.6 46.0 581 117-802 3-771 (862)
3 1ile_A Ilers, isoleucyl-tRNA s 1.0 1 1 971.7 36.6 586 119-748 6-814 (821)
4 1wz2_A Leucyl-tRNA synthetase; 1.0 1 1 918.7 45.4 601 119-784 2-878 (967)
5 1wkb_A Leucyl-tRNA synthetase; 1.0 1 1 806.9 43.4 532 119-699 2-810 (810)
6 2v0c_A Aminoacyl-tRNA syntheta 1.0 1 1 765.8 25.2 554 119-755 2-836 (878)
7 4arc_A Leucine--tRNA ligase; l 1.0 1 1 735.0 36.6 520 117-726 21-815 (880)
8 3u1f_A Methionyl-tRNA syntheta 1.0 1 1 476.7 24.3 454 148-701 7-500 (542)
9 1rqg_A Methionyl-tRNA syntheta 1.0 1 1 452.1 30.9 470 150-701 2-522 (722)
10 2x1l_A Methionyl-tRNA syntheta 1.0 1 1 394.9 23.3 451 147-701 9-492 (524)
No 1
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=1.00 E-value=1 Score=1288.28 Aligned_cols=702 Identities=43% Similarity=0.738 Sum_probs=626.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 85435448777889988912223699999885897400223-79999569725999989966112987778999999999
Q 002784 105 RYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYK 183 (881)
Q Consensus 105 ~~~~tl~lp~t~f~~r~n~~~~E~~~~~~W~~~~~y~~~~~-~~~~~~f~l~dgPPyaNG~lHiGHaln~il~Dii~R~~ 183 (881)
+||+|||||+|+||||+|+.++|++||++|+++++|++..+ +.++++|++|+|||||||.||||||+|++++|+++||+
T Consensus 2 ~y~~tl~lp~t~fpm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~ 81 (917)
T 1ffy_A 2 DYEKTLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYK 81 (917)
T ss_dssp CSGGGSCCCCCCCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 61353158999999888968886999999998799554532356898645277899999951677899899999999999
Q ss_pred HHCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 84899044316758899379999997535210057994798999999999999999999998155335699866895001
Q 002784 184 LLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEY 263 (881)
Q Consensus 184 ~l~G~~V~~~~GwD~hGlpie~~a~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~lGi~~DW~~~y~T~dp~y 263 (881)
+|+||+|+|+|||||||||||.+|++. +. .++++++.+|+++|++|+.++++.|+++|++||+++||+++|+||||.|
T Consensus 82 rm~G~~v~~~~GwD~hGlpiE~~a~k~-G~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~ 159 (917)
T 1ffy_A 82 TMQGFYAPYVPGWDTHGLPIEQALTKK-GV-DRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEY 159 (917)
T ss_dssp HTTTCBCCCCCEEBCCSHHHHHHHHHH-TC-CSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHH
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHC-CC-CCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCEECCCHHH
T ss_conf 967998898001763439999999981-99-9022899999999999999999999999998190771688868179899
Q ss_pred HHCE-------ECCCCEECEEEEEEEECCCCCCCCCCCCCCC-------------------------CCCEEEEECCCCC
Q ss_conf 1320-------0388240135647652379998510000016-------------------------9841798527523
Q 002784 264 EAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFL-------------------------PDLGLAVWTTTPW 311 (881)
Q Consensus 264 ~~~q-------Y~~g~~s~siyv~f~~~~~~~~~~~~l~~~~-------------------------~~~~~~iwTTtPw 311 (881)
++.+ |++|+ +|.+...++||+.+.+.|.+.. .+.+++|||||||
T Consensus 160 ~~~v~~~F~~l~~kGl----iYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~ 235 (917)
T 1ffy_A 160 EAAQIRIFGEMADKGL----IYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPW 235 (917)
T ss_dssp HHHHHHHHHHHHHTTC----EEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEECCBCCCSSTTGGGTTCCBCCEESCGG
T ss_pred HHHHHHHHHHHHHCCC----EEECCCCEECCCCCCCCCCHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCC
T ss_conf 9999999999997699----674044311238889684435520345657628999982166565479876999968832
Q ss_pred CCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCC-CEE--EEEECCC
Q ss_conf 2246631654789857999970223588877566788999743478742999966523779987099-349--9771026
Q 002784 312 TVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGT-KLV--IKKTLAG 388 (881)
Q Consensus 312 Tl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~-~~~--i~~~~~G 388 (881)
|||||+||+|||+.+|++++.. ++.+++|+++++.+....+. .++ ++.+++|
T Consensus 236 Tl~~~~av~v~p~~~Y~~v~~~-------------------------~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G 290 (917)
T 1ffy_A 236 TIPSNVAITVHPELKYGQYNVN-------------------------GEKYIIAEALSDAVAEALDWDKASIKLEKEYTG 290 (917)
T ss_dssp GSSCCBCCCCCTTCCCCCCCTT-------------------------TTCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCT
T ss_pred HHHHCEEEEECCCCCEEEEEEC-------------------------CCEEEHHHHHHHHHHHHCCCCCCEEEEEEEEEC
T ss_conf 3434528999899826889717-------------------------843406899999999860845430222223323
Q ss_pred CCCCCCEEECCCCCCCCCEEECCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCEECC
Q ss_conf 65558776458899986446437631236998851217899966899999929992102489996432236678922246
Q 002784 389 SDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLG 468 (881)
Q Consensus 389 ~~L~g~~~~~Pl~~~~~pv~i~~~~V~~~~GTG~Vh~aPahg~~D~~~~~k~gL~i~~~vd~~G~~~~~~~~~~G~~v~~ 468 (881)
.+|+|++|.||++++++|| +.++||++++|||+||+|||||++||.++++||||++++||++|+|++++|.|.|++++
T Consensus 291 ~~l~g~~~~~P~~~~~~pv-i~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v~- 368 (917)
T 1ffy_A 291 KELEWVVAQHPFLDRESLV-INGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYD- 368 (917)
T ss_dssp TTCTTCCCBCCTTCCSBCC-CCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCSS-
T ss_pred CCCCCCEEECCCCCCEEEE-EECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCCCHH-
T ss_conf 0046888978888871248-83251456899761576798998899999985998000178986167766113895999-
Q ss_pred CHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC------------
Q ss_conf 30599999998439722100243336631489997488004532335031799999862056235998------------
Q 002784 469 DGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ------------ 536 (881)
Q Consensus 469 ~a~~~ii~~L~~~g~ll~~~~~~h~yp~~wRtk~Pvi~r~t~QWFi~~~~lr~~al~~i~~v~~~P~~------------ 536 (881)
+|++.|++.|++.|.+++.+.+.|+||||||||+|+++|+|+|||++++++++.+++++++++|+|++
T Consensus 369 ~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~~l~~~ 448 (917)
T 1ffy_A 369 KANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDR 448 (917)
T ss_dssp HHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCEEEEEECCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
T ss_conf 98999999999679843544443458774588977899823604765899999999998638510789999999998447
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 449 ~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~W 528 (917)
T 1ffy_A 449 GEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVW 528 (917)
T ss_dssp CCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHH
T ss_pred CCCEEECCCCCCCCCCEEECCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 53405426776865460367999883678898999987542287544567977846554435567744444457876731
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 529 fdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~d 608 (917)
T 1ffy_A 529 FDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQ 608 (917)
T ss_dssp HHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHH
T ss_pred CCCCCCHHHHCCCCHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHH
T ss_conf 68999888871883114898549999856113199999999999629985532037613884788681012688478589
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 998888722768765158887312184577899999999754789887224688777-7657999997689999999999
Q 002784 537 EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG-NSISYDDLPMIDQYALFQLENI 615 (881)
Q Consensus 537 ~~~~yGaD~LRlwvas~~~~~Dv~~s~~~l~~~~~~~~KlrNt~rfll~nl~~f~~~-~~~~~~~l~~~Dr~ils~l~~l 615 (881)
++.+||||+||||++++++.+|++|+++.+++..++++||||++||+++|+.+|++. +.++...+...|+|++++++++
T Consensus 609 vi~~yGaDalR~~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~ 688 (917)
T 1ffy_A 609 VVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREF 688 (917)
T ss_dssp HHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98757989999887605888886248999999999999999999988765420574335678100588799999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999998605848999999999999766789998200114799995878999999999999999986011315699999
Q 002784 616 VKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVW 695 (881)
Q Consensus 616 i~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yle~~KdrLy~~~~~~~~r~s~~~vL~~iL~~l~~lLaPilP~~aEEiw 695 (881)
+++++++|++|+|+.|++.+++|++++||+||++++|||+|++..++..|++++++|+++++.+++||+|||||+|||+|
T Consensus 689 ~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw 768 (917)
T 1ffy_A 689 TASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVW 768 (917)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99999999766989999999999999988899875002442367780999999999999999999972153558999999
Q ss_pred HHCCCCCCCCCCCCCCCEEECCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHH
Q ss_conf 84786655568998764351379886300179973257899999999999999999986057678886307999908967
Q 002784 696 QNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDAS 775 (881)
Q Consensus 696 ~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~r~~k~i~~sle~~V~I~~~~~~ 775 (881)
++|+.. ..+||+++.||++++ .+ +.+.+.|+.++++|++|+++++.+|+++.|+.++++.|+|+++++.
T Consensus 769 ~~l~~~-------~~~sv~~~~wP~~~~--~~--~~l~~~~~~~~~v~~~v~~~~~~~R~~~~i~~~l~~~v~i~~~~~~ 837 (917)
T 1ffy_A 769 SHTPHV-------KEESVHLADMPKVVE--VD--QALLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKF 837 (917)
T ss_dssp TTSTTC-------SSSSGGGSCCCCCCC--CC--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSGGGEEEEEECCSSC
T ss_pred HHCCCC-------CCCCEEECCCCCCCC--CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHH
T ss_conf 973567-------899758137999983--10--8999999999999999999999999836889877047999958706
Q ss_pred -HHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEE-EEEEECCCCCCCCCCCEECCCC
Q ss_conf -99999985015886557645540000287369999876578888742103876179-9998179998877652004777
Q 002784 776 -LASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVW-IGVSRAEGSKCERCWNYSTQVG 853 (881)
Q Consensus 776 -~~~~l~~l~~~~~~~~~L~~l~~VS~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~a~~~kC~RCW~y~~~~~ 853 (881)
..+.|+.+ ++|+++|+||+|++....+. + .+. .++. |.|.+|+|+||||||+|.++||
T Consensus 838 ~~~~~l~~~-------~~l~~~~~~s~~~~~~~~~~----~-----~~~----~~~~~~~~~~~~~~kc~rcw~~~~~~~ 897 (917)
T 1ffy_A 838 NASEFLTSF-------DALHQLFIVSQVKVVDKLDD----Q-----ATA----YEHGDIVIEHADGEKCERCWNYSEDLG 897 (917)
T ss_dssp CHHHHGGGC-------SCHHHHTTSSEEEECSCCCT----T-----SEE----ETTEEEEEEECSSEECTTTCCEESCCE
T ss_pred HHHHHHHHH-------HHHHHHHCCCCEEEECCCCC----C-----CCC----CCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 699998647-------99999866362499567853----1-----000----465559999679998703398866646
Q ss_pred CCCCCCCCCHHHHHHHC
Q ss_conf 87999999931599730
Q 002784 854 SFVEHPTLCSRCYEVLA 870 (881)
Q Consensus 854 ~~~~~~~lC~RC~~vl~ 870 (881)
.+++|++||+||+++|.
T Consensus 898 ~~~~~~~~c~rc~~~~~ 914 (917)
T 1ffy_A 898 AVDELTHLCPRCQQVVK 914 (917)
T ss_dssp EETTEEEECHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHH
T ss_conf 67898975876899999
No 2
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=1.00 E-value=1 Score=972.55 Aligned_cols=581 Identities=22% Similarity=0.355 Sum_probs=510.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 89988912223699999885897400223799995697259999899661129877789999999998489904431675
Q 002784 117 FGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGW 196 (881)
Q Consensus 117 f~~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~l~dgPPyaNG~lHiGHaln~il~Dii~R~~~l~G~~V~~~~Gw 196 (881)
.|.++|+.++|++||++|++ ++|++..+ .++++|++++||||+||.|||||++|++++|+++||+||+||+|+|+|||
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~~-~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~ 80 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVANPK-SGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGT 80 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCCTT-CCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEE
T ss_pred CCCCCCHHHHHHHHHHHHHH-CCCCCCCC-CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 86689948988999999986-77756767-89981899748999989866346688899999999999479950245652
Q ss_pred CCCCCHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCE-------
Q ss_conf 88993799999975352--100579947989999999999999999999981553356998668950011320-------
Q 002784 197 DCHGLPIELKVLQSLDE--DAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ------- 267 (881)
Q Consensus 197 D~hGlpie~~a~k~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~lGi~~DW~~~y~T~dp~y~~~q------- 267 (881)
||||||||.+++++++. ....++++++|+++|++|+.++++.|++||++||+++||+|+|+||||.|++++
T Consensus 81 D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 160 (862)
T 1gax_A 81 DHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRY 160 (862)
T ss_dssp BCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 87771999999999987499968839999999999999999999999999828503578982169889999999999999
Q ss_pred ECCCCEECEEEEEEEECCCCCCCCCCCCCC-----------------C-CCCEEEEECCCCCCCCCCCEEEECCCCCEEE
Q ss_conf 038824013564765237999851000001-----------------6-9841798527523224663165478985799
Q 002784 268 YPEGHVSRSIYAVFRMVSAPPSTSGLLNEF-----------------L-PDLGLAVWTTTPWTVPANAAVAVNAKLQYAV 329 (881)
Q Consensus 268 Y~~g~~s~siyv~f~~~~~~~~~~~~l~~~-----------------~-~~~~~~iwTTtPwTl~an~av~v~p~~~Y~~ 329 (881)
|++|+ +|.+...++||+.+.+.|.+. + .+.+++||||||||||||+||+|||+.+.
T Consensus 161 ~~kGl----iYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~r-- 234 (862)
T 1gax_A 161 YHEGL----AYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDER-- 234 (862)
T ss_dssp HTTSS----EEEECCEEEEETTTTEEECGGGEEECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCT--
T ss_pred HHCCC----EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCH--
T ss_conf 87798----883241366378758555652233445565389999994699779999588553451358998998607--
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 99702235888775667889997434787429999665237799870993499771026655587764588999864464
Q 002784 330 VEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVI 409 (881)
Q Consensus 330 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl~~~~~pv~i 409 (881)
+++|+|++|.||+.++.+|| +
T Consensus 235 ----------------------------------------------------------y~~l~G~~~~~P~~~~~ipi-i 255 (862)
T 1gax_A 235 ----------------------------------------------------------YRHLLGKRARIPLTEVWIPI-L 255 (862)
T ss_dssp ----------------------------------------------------------TCSCTTCCCBCTTCCCBCCE-E
T ss_pred ----------------------------------------------------------HHHHCCCEEECCCCCCEEEE-E
T ss_conf ----------------------------------------------------------88875978978888983369-7
Q ss_pred CCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCC--CCCCCCEECCCHHHHHHHHHHHCCCCCCE
Q ss_conf 3763123699885121789996689999992999210248999643223--66789222463059999999843972210
Q 002784 410 GGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEA--GKFSGLDVLGDGNVAVVKYLDEQMSLIME 487 (881)
Q Consensus 410 ~~~~V~~~~GTG~Vh~aPahg~~D~~~~~k~gL~i~~~vd~~G~~~~~~--~~~~G~~v~~~a~~~ii~~L~~~g~ll~~ 487 (881)
.++||++++|||+||++||||++||.++++||||+++++|++|++++++ |.|.|++++ +|++.|++.|++.|.++..
T Consensus 256 ~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~-~a~~~iv~~L~~~g~l~~~ 334 (862)
T 1gax_A 256 ADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRF-EARRKAVELFREAGHLVKE 334 (862)
T ss_dssp ECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSS-HHHHHHHHHHHTTTCEEEE
T ss_pred ECCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHCCCEEEE
T ss_conf 045212688976258557888237999998399864335798704235677554896999-9999999999867984542
Q ss_pred ECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHC--CCCCCCCC-----------------------------
Q ss_conf 02433366314899974880045323350317999998620--56235998-----------------------------
Q 002784 488 EPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--QVKWVPPQ----------------------------- 536 (881)
Q Consensus 488 ~~~~h~yp~~wRtk~Pvi~r~t~QWFi~~~~lr~~al~~i~--~v~~~P~~----------------------------- 536 (881)
+++.|+|||||||++|+++|+++|||++++.+++.++++++ +++|+|++
T Consensus 335 ~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~ 414 (862)
T 1gax_A 335 EDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPA 414 (862)
T ss_dssp EEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCC
T ss_pred CCCCCCCCEECCCCCEEEEEECCEEEEEHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 34446587205889768999515279886999999999997099567178999999999726656367535678755684
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 415 w~~~~~~~i~v~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~ 494 (862)
T 1gax_A 415 WYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFL 494 (862)
T ss_dssp EEETTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTT
T ss_pred EECCCCCEEEEECCCCCCCCCHHHHHCCCHHEECCCCCCCEEECCCCCCHHHCCCCCCHHHHHHHCCCEEEECCCCCCCC
T ss_conf 34589998997121103555502344482110247764562100577502211688765889841995389627302212
Q ss_pred -----------------------------------------------CCCCCCCCHHHHHHHHC-CCCCCEECCHHHHHH
Q ss_conf -----------------------------------------------99888872276876515-888731218457789
Q 002784 537 -----------------------------------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQ 568 (881)
Q Consensus 537 -----------------------------------------------~~~~yGaD~LRlwvas~-~~~~Dv~~s~~~l~~ 568 (881)
++.+||||+||||+++. .+++|++|+++.+.+
T Consensus 495 W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~ 574 (862)
T 1gax_A 495 WVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEM 574 (862)
T ss_dssp THHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 99999999998619996127999446983799776666888789999998749089999998468777888468899999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997547898872246887777657999997689999999999999999986058489999999999997667899
Q 002784 569 MSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYF 648 (881)
Q Consensus 569 ~~~~~~KlrNt~rfll~nl~~f~~~~~~~~~~l~~~Dr~ils~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yl 648 (881)
..++++|+||++||+++|+.++.+. ...+...|+|++++++.++++++++|++|+|+.|++.+++|+++++||||+
T Consensus 575 ~~~f~nkl~N~~rf~~~~~~~~~~~----~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yi 650 (862)
T 1gax_A 575 ARNFANKLYNAARFVLLSREGFQAK----EDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYL 650 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCC----BCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999998602578886----544788899999999999999999997238879999999999887657999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCHHCCCC
Q ss_conf 98200114799995878999999999999999986011315699999847866555689987643513798863001799
Q 002784 649 DVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTF 728 (881)
Q Consensus 649 e~~KdrLy~~~~~~~~r~s~~~vL~~iL~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~~~~~~~ 728 (881)
+.+|+|+|++ +++++.+|+++|+.+++||||||||+|||+|++|+. .+||++++||+++ +.+
T Consensus 651 e~~k~~l~~~------~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~---------~~sv~~~~wP~~~--~~d- 712 (862)
T 1gax_A 651 EAAKPALKAG------NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG---------KEELALEAWPEPG--GRD- 712 (862)
T ss_dssp HHHHHHHHTT------BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC---------CSCGGGSCCCCCC--CCC-
T ss_pred HHCCHHHHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCC--CCC-
T ss_conf 8704343132------899999999999999999703215799999996689---------9817854899998--678-
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHCCCE
Q ss_conf 73257899999999999999999986057678886307999908967999999850158865576455400002
Q 002784 729 PVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQV 802 (881)
Q Consensus 729 ~~~~~~~~~~l~~lr~~v~~~le~~r~~k~i~~sle~~V~I~~~~~~~~~~l~~l~~~~~~~~~L~~l~~VS~V 802 (881)
+.++..++.++++ +..++.+|....|+.+.++.++|. + . . +.+..+ .+.|..++.|++|
T Consensus 713 -~~~~~~~~~~~~v----~~~~r~~r~~~~i~~~~~~~~~v~-~-~-~-~~~~~~------~~~i~~~~~~~~~ 771 (862)
T 1gax_A 713 -EEAERAFEALKQA----VTAVRALKAEAGLPPAQEVRVYLE-G-E-T-APVEEN------LEVFRFLSRADLL 771 (862)
T ss_dssp -HHHHHHHHHHHHH----HHHHHHHHHHHTCCTTCCEEEEEE-E-S-C-HHHHHT------HHHHHHHHCEEEC
T ss_pred -HHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEEEE-C-H-H-HHHHHH------HHHHHHHHCCCCC
T ss_conf -9999999999999----999997655514788870489994-7-4-9-999999------9999987386656
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=1.00 E-value=1 Score=971.75 Aligned_cols=586 Identities=29% Similarity=0.529 Sum_probs=510.9
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 988912223699999885897400223-7999956972599998996611298777899999999984899044316758
Q 002784 119 MRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWD 197 (881)
Q Consensus 119 ~r~n~~~~E~~~~~~W~~~~~y~~~~~-~~~~~~f~l~dgPPyaNG~lHiGHaln~il~Dii~R~~~l~G~~V~~~~GwD 197 (881)
|++|+.++|++||++|+++++|++..+ +.++++|++++|||||||.|||||++|++++|+++||++|+||+|+|+||||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D 85 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 68997898899999998779903570015899968995289999998704455737999999999995699403436436
Q ss_pred CCCCHHHHHHHHHCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCE-------
Q ss_conf 89937999999753521---00579947989999999999999999999981553356998668950011320-------
Q 002784 198 CHGLPIELKVLQSLDED---AKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ------- 267 (881)
Q Consensus 198 ~hGlpie~~a~k~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~lGi~~DW~~~y~T~dp~y~~~q------- 267 (881)
|||||||.+|++.++.. ...++++.+|++.|++|+.++++.|+++|++||+++||+++|+||||.|++.+
T Consensus 86 ~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L 165 (821)
T 1ile_A 86 THGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNL 165 (821)
T ss_dssp CCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEECCHHHHHHHHHHHHHH
T ss_conf 77865799999984625552076559999999999999999999999999828757157985878989999999999999
Q ss_pred ECCCCEECEEEEEEEECCCCCCCCCCCCCC---------------------------CCCCEEEEECCCCCCCCCCCEEE
Q ss_conf 038824013564765237999851000001---------------------------69841798527523224663165
Q 002784 268 YPEGHVSRSIYAVFRMVSAPPSTSGLLNEF---------------------------LPDLGLAVWTTTPWTVPANAAVA 320 (881)
Q Consensus 268 Y~~g~~s~siyv~f~~~~~~~~~~~~l~~~---------------------------~~~~~~~iwTTtPwTl~an~av~ 320 (881)
|++|++ |.+...++||+.+.+.|.+. ..+.+++||||||||||||+|||
T Consensus 166 ~~~Gli----y~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~ 241 (821)
T 1ile_A 166 FDRGLL----YRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAA 241 (821)
T ss_dssp HHTTCE----EEECCEEEEETTTTEECCHHHHHHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEE
T ss_pred HHCCCE----EECCCCEEECCCCCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHCEEEE
T ss_conf 986985----5447425731788976317675157204668459999983587666788988999949972143457999
Q ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCCCEEECCC
Q ss_conf 47898579999702235888775667889997434787429999665237799870993499771026655587764588
Q 002784 321 VNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPV 400 (881)
Q Consensus 321 v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~~~~Pl 400 (881)
|||+.+|+.++.+ ++.+|+|+++++.+... .++++.+++|++|+|+.+.||+
T Consensus 242 v~p~~~y~~~~~~-------------------------~~~~i~a~~~~~~~~~~---~~~~~~~~~G~~l~g~~~~~p~ 293 (821)
T 1ile_A 242 VHPEYTYAAFQVG-------------------------DEALILEEGLGRKLLGE---GTQVLKTFPGKALEGLPYTPPY 293 (821)
T ss_dssp ECTTSCEEEEEET-------------------------TEEEEEETTHHHHHTCT---TSCEEEEECHHHHTTCBBCCSS
T ss_pred ECCCCCEEEEECC-------------------------CCEEEEHHHHHHHHHHH---CCEEEEEECHHHHCCCEEECCC
T ss_conf 9899715678717-------------------------94798628999999840---8589887506874598898677
Q ss_pred C---CCCCCEEECCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCEECCCHHHHHHHH
Q ss_conf 9---9986446437631236998851217899966899999929992102489996432236678922246305999999
Q 002784 401 D---NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKY 477 (881)
Q Consensus 401 ~---~~~~pv~i~~~~V~~~~GTG~Vh~aPahg~~D~~~~~k~gL~i~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~ 477 (881)
. ++.+|| +.++||++++|||+||+|||||++||.++++||||++++||++|+|+++ + |.|++++ +|++.|++.
T Consensus 294 ~~~~~~~~pi-~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~-~-~~G~~~~-~a~~~i~~~ 369 (821)
T 1ile_A 294 PQALEKGYFV-VLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLYFR-EANRAILRD 369 (821)
T ss_dssp CCCCSSCSBE-EECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G-GTTCBHH-HHHHHHHHH
T ss_pred CCCCCCEEEE-EECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCEEECCCCCCCCC-C-CCCCCHH-HHHHHHHHH
T ss_conf 6668987799-8547186688976447447798789999998599832047899737336-7-6897989-988999999
Q ss_pred HHHCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC---------------------
Q ss_conf 98439722100243336631489997488004532335031799999862056235998---------------------
Q 002784 478 LDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ--------------------- 536 (881)
Q Consensus 478 L~~~g~ll~~~~~~h~yp~~wRtk~Pvi~r~t~QWFi~~~~lr~~al~~i~~v~~~P~~--------------------- 536 (881)
|++.|.+++.+.|.|+|||||||++|+++|+++|||++++++++.+++++++++|+|++
T Consensus 370 L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRq 449 (821)
T 1ile_A 370 LRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRN 449 (821)
T ss_dssp HHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBC
T ss_pred HHHCCCEEEEECCCCCCCEECCCCCEEEEEECCHHHHCHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHCCCHHEECCC
T ss_conf 99679913000231258774688997999835515526699999999975681897834467699999837713100046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 002784 537 -------------------------------------------------------------------------------- 536 (881)
Q Consensus 537 -------------------------------------------------------------------------------- 536 (881)
T Consensus 450 r~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~~~ 529 (821)
T 1ile_A 450 RYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASL 529 (821)
T ss_dssp CSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEEECCCCCEEEECCHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCEECCCCCCHHHHC
T ss_conf 77788231899659996785275999975055666212220431001233578899763216530001323661247650
Q ss_pred ---------------------------------------------------------------------------CCCCC
Q ss_conf ---------------------------------------------------------------------------99888
Q 002784 537 ---------------------------------------------------------------------------EAPGY 541 (881)
Q Consensus 537 ---------------------------------------------------------------------------~~~~y 541 (881)
++.+|
T Consensus 530 ~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~y 609 (821)
T 1ile_A 530 HYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKF 609 (821)
T ss_dssp TTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTT
T ss_pred CCCCCCHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 89854667785338861003306566019999999899862987765599980099899987776578899999999872
Q ss_pred CCCHHHHHHHHC-CCCCCEECCHHHHHH-HHHHHHHHHHHHHHHH--HCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 872276876515-888731218457789-9999999754789887--22468877-776579999976899999999999
Q 002784 542 GADVLRLWVSSV-DYTGDVMIGPQVLRQ-MSDIYRKLRGTLRYLL--GNLHDWRV-GNSISYDDLPMIDQYALFQLENIV 616 (881)
Q Consensus 542 GaD~LRlwvas~-~~~~Dv~~s~~~l~~-~~~~~~KlrNt~rfll--~nl~~f~~-~~~~~~~~l~~~Dr~ils~l~~li 616 (881)
|+|++|||+++. ++.+|++|+++.+.+ +.++++||||+++|++ +++.++.+ ... ....+...|+|++++++.++
T Consensus 610 GaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~ll~~l~~~~ 688 (821)
T 1ile_A 610 GADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPP-PPEKRPEMDRWLLARMQDLI 688 (821)
T ss_dssp CHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCC-CSTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHH
T ss_conf 97999999983789888857549998799999999999999999985111368853333-43338888999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999986058489999999999997667899982001147999958789999999999999999860113156999998
Q 002784 617 KNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQ 696 (881)
Q Consensus 617 ~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yle~~KdrLy~~~~~~~~r~s~~~vL~~iL~~l~~lLaPilP~~aEEiw~ 696 (881)
+.+.++|++|+|++|++.|++|++++++|+|++.+|+|+|+... +..|++++++|+++|+.+++||+|||||+|||+|+
T Consensus 689 ~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~-~~~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~ 767 (821)
T 1ile_A 689 QRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNED-ALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQ 767 (821)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTT-TSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999997668999999999999999999999985211025777-67789999999999999998708866657999998
Q ss_pred HCCCCCCCCCCCCCC-CEEECCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 478665556899876-4351379886300179973257899999999999999
Q 002784 697 NLPFAYTLEDGSAAE-FVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNK 748 (881)
Q Consensus 697 ~L~~~~~~~~~~~~~-sV~~~~wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~ 748 (881)
.|+... +...+ ||+++.||++++.+.+ ++++..|+.++++++.++.
T Consensus 768 ~L~~~~----~~~~~~sv~~~~~P~~~~~~~~--~~~~~~~~~~~~~~~~~r~ 814 (821)
T 1ile_A 768 NLVRSV----RLEAKESVHLADWPEADPALAD--EALVAQMRAVLKVVDLARA 814 (821)
T ss_dssp HHTTTT----STTSCSSGGGSCCCCCCTTTCC--HHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCC----CCCCCCCEEEECCCCCCCCCCC--HHHHHHHHHHHHHHHHHHH
T ss_conf 663334----6778886582168999710089--8999999999999999999
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=918.68 Aligned_cols=601 Identities=21% Similarity=0.312 Sum_probs=496.9
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 988912223699999885897400223-7999956972599998996611298777899999999984899044316758
Q 002784 119 MRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWD 197 (881)
Q Consensus 119 ~r~n~~~~E~~~~~~W~~~~~y~~~~~-~~~~~~f~l~dgPPyaNG~lHiGHaln~il~Dii~R~~~l~G~~V~~~~GwD 197 (881)
+.+|+.++|++||++|+++++|++..+ +.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|+||||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD 81 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGGGSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBB
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 98998999999999998679803472226889968998489988887501235878999999999981799608887279
Q ss_pred CCCCHHHHHHHHHCCCC--------CCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCHHH
Q ss_conf 89937999999753521--------00579947989--99999999999999999998155335699866895--00113
Q 002784 198 CHGLPIELKVLQSLDED--------AKKDLTPSKLR--AKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLD--PEYEA 265 (881)
Q Consensus 198 ~hGlpie~~a~k~~~~~--------~~~~~~~~~~~--~~~~~~a~~~~~~~~~~f~~lGi~~DW~~~y~T~d--p~y~~ 265 (881)
|||||||..|++..... ...+++..+++ ..|++|+.++.+.|++||++||+++||+|+|+||| |.|++
T Consensus 82 ~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~ 161 (967)
T 1wz2_A 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSK 161 (967)
T ss_dssp CCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHH
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEECCCCHHHHH
T ss_conf 98818899999860365368999998609987888888889999999999999999981942735897687889835899
Q ss_pred CE-------ECCCCEECEEEEEEEECCCCCCCCCCCCCCC-------------------C----CCEEEEECCCCCCCCC
Q ss_conf 20-------0388240135647652379998510000016-------------------9----8417985275232246
Q 002784 266 AQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFL-------------------P----DLGLAVWTTTPWTVPA 315 (881)
Q Consensus 266 ~q-------Y~~g~~s~siyv~f~~~~~~~~~~~~l~~~~-------------------~----~~~~~iwTTtPwTl~a 315 (881)
++ |++|+ +|.+...++||+.+.+.|.+.. . +.+++|||||||||||
T Consensus 162 ~v~~~F~~L~~kGl----iyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g 237 (967)
T 1wz2_A 162 FIEWQFWKLKEKGY----IVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYG 237 (967)
T ss_dssp HHHHHHHHTTTTTC----EEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGGGG
T ss_pred HHHHHHHHHHHCCC----EEEECEEECCCCCCCCCCCHHHHCCCCCCEECEEEEEEEEECCCCCCEEEEEECCCCHHHHH
T ss_conf 99999999997899----89714676235877887166565069874012169999983588875699998388507556
Q ss_pred CCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCCCE
Q ss_conf 63165478985799997022358887756678899974347874299996652377998709934997710266555877
Q 002784 316 NAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCR 395 (881)
Q Consensus 316 n~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~ 395 (881)
|+||||||+.+|+.++..+ +...+.+|+++++++++..+ +..++++.+++|++|+|++
T Consensus 238 ~~avav~P~~~Y~~~~~~~---------------------~~~~~~~i~a~~~~~~~~~~-~~~~~~~~~~~G~~l~G~~ 295 (967)
T 1wz2_A 238 VTNMWVNPNATYVKAKVRR---------------------KDKEETWIVSKEAAYKLSFQ-DREIEVIEEFKGEKLIGKY 295 (967)
T ss_dssp CCEEEECSSSCEEEEEEEC---------------------SSCEEEEEEEHHHHHHHHHS-SCEEEEEEECCSSTTSSCE
T ss_pred HEEEEECCCCCEEEEEECC---------------------CCCCEEEEHHHHHHHHHHHH-CCCCEEEEEEECHHHCCCE
T ss_conf 5089988898379999169---------------------87542321199999999864-0584899998815506898
Q ss_pred EECCCCCCCCCEEECCCCCCCCCCCCCEECCCCCCHHHHHH----------HHHHCCC--------CEECC---------
Q ss_conf 64588999864464376312369988512178999668999----------9992999--------21024---------
Q 002784 396 YVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT----------SLKYGLP--------ILSPV--------- 448 (881)
Q Consensus 396 ~~~Pl~~~~~pv~i~~~~V~~~~GTG~Vh~aPahg~~D~~~----------~~k~gL~--------i~~~v--------- 448 (881)
|.||++++++|| ++++||++++|||+||+|||||++||.+ +++|||| +++++
T Consensus 296 ~~~P~~~~~ipi-~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~ 374 (967)
T 1wz2_A 296 VRNPVSGDEVII-LPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFP 374 (967)
T ss_dssp EECSSSSCEEEE-EECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CC
T ss_pred EECCCCCCCEEE-EECCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCC
T ss_conf 988899980379-9405245898862178606898778999986400135798729960102565622335147756531
Q ss_pred --------------CC----------------CCCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCCEECCCCCCCCCC
Q ss_conf --------------89----------------996432236678922246305999999984397221002433366314
Q 002784 449 --------------DD----------------EGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDW 498 (881)
Q Consensus 449 --------------d~----------------~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~ll~~~~~~h~yp~~w 498 (881)
|+ +|+++ .|.|.|+.|. +|++.|++.|.+.|.++....+.| ||+||
T Consensus 375 ~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~--~g~~~G~~v~-ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~ 450 (967)
T 1wz2_A 375 AVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQ-EVKEAIAKEMLEKGIAEIMYEFAE-KNVIS 450 (967)
T ss_dssp SSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC--SSSSCSSBHH-HHTTTTHHHHHHHTSEEECCEESS-SCCBC
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE--CCCCCCCCHH-HHHHHHHHHHHHCCCCEEEEECCC-CCEEC
T ss_conf 3555553067786416777777777654014682694--5674881889-989999999996798157886587-96378
Q ss_pred CCCCCEEEE-ECCCCCCCHHH--HHHHHHHHHCCCCCC------------------------------------------
Q ss_conf 899974880-04532335031--799999862056235------------------------------------------
Q 002784 499 RTKKPTIFR-ATEQWFASVEG--FRQAAMDAIGQVKWV------------------------------------------ 533 (881)
Q Consensus 499 Rtk~Pvi~r-~t~QWFi~~~~--lr~~al~~i~~v~~~------------------------------------------ 533 (881)
||++|++++ +++|||+++++ +++.+++++++++|+
T Consensus 451 R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ 530 (967)
T 1wz2_A 451 RFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLS 530 (967)
T ss_dssp SSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHH
T ss_pred CCCCEEEEECCCCCCCEECCCHHHHHHHHHHHHCCEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99988999536776414468067899999866123762745436688866204371414678788508867553346677
Q ss_pred ------------------------------------------------------------------------CCC-----
Q ss_conf ------------------------------------------------------------------------998-----
Q 002784 534 ------------------------------------------------------------------------PPQ----- 536 (881)
Q Consensus 534 ------------------------------------------------------------------------P~~----- 536 (881)
|..
T Consensus 531 ds~iYv~~~~~~~~~~~~~~~~g~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G 610 (967)
T 1wz2_A 531 DSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSG 610 (967)
T ss_dssp HTTSTHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEE
T ss_pred CCCEEEEHHHHHHHHHHHHHHCCCCHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 87257540003568988777629996884911040541376565763201554199978876537999833897078653
Q ss_pred -----------------------------------------------------CCCCCCCCHHHHHHH-HCCCCCCEECC
Q ss_conf -----------------------------------------------------998888722768765-15888731218
Q 002784 537 -----------------------------------------------------EAPGYGADVLRLWVS-SVDYTGDVMIG 562 (881)
Q Consensus 537 -----------------------------------------------------~~~~yGaD~LRlwva-s~~~~~Dv~~s 562 (881)
++++||||++|||++ ++++.+|++|+
T Consensus 611 ~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs 690 (967)
T 1wz2_A 611 KDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWR 690 (967)
T ss_dssp GGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEEC
T ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCEECCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 27303289999999999709664454689942796088781214467799999998719589999999579977786407
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 45778999999997547898872246887777657999997689999999999999999986058489999999999997
Q 002784 563 PQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVD 642 (881)
Q Consensus 563 ~~~l~~~~~~~~KlrNt~rfll~nl~~f~~~~~~~~~~l~~~Dr~ils~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ 642 (881)
++.++++.++++|+||++++++++. .+ ....+...|+|++++++.++++++++|++|+|+.|++.++.|+++
T Consensus 691 ~~~~~~~~~~l~rl~n~~~~~~~~~---~~----~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~- 762 (967)
T 1wz2_A 691 RKEVGKLRKQIERFYELISQFAEYE---VK----GNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMN- 762 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSC---CC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC---CC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
T ss_conf 8999999999999999999986478---87----744278889999999999999999999824899999999999999-
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 66789998200114799995878999999999999999986011315699999847866555689987643513798863
Q 002784 643 LSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLD 722 (881)
Q Consensus 643 ls~~Yle~~KdrLy~~~~~~~~r~s~~~vL~~iL~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~ 722 (881)
.+|+|++.+|++ .+++++++|+++|+.+++||+|||||+|||+|+.|+. .+||+++.||+++
T Consensus 763 ~~n~Yi~~~k~~---------~~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~---------~~sv~~~~wP~~~ 824 (967)
T 1wz2_A 763 DLRWYLRRTEGR---------DDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGG---------EGFVSLAKWPEPV 824 (967)
T ss_dssp HHHHHHHHTTTC---------CCHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSC---------CSCGGGSCCCCCC
T ss_pred HHHHHHHHCCCH---------HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC---------CCCEECCCCCCCC
T ss_conf 999888751564---------4789999999999999998355455589999996599---------9855403899998
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf 00179973257899999999999999999986057678886307999908967999999850
Q 002784 723 EKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMC 784 (881)
Q Consensus 723 ~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~r~~k~i~~sle~~V~I~~~~~~~~~~l~~l~ 784 (881)
+.+.+ ++++..|+.++++++.|+++++.++ + +.+.+++|++++++..+.+..+.
T Consensus 825 ~~~~d--~~~~~~~~~~~~~~~~vr~~~~~~~----~--~~p~~~~i~~~~~~~~~~~~~~~ 878 (967)
T 1wz2_A 825 EEWWN--ETIEAEEEFIRSVMEDIKEIIEVAK----I--ENAKRAYIYTAEDWKWKVAEVVS 878 (967)
T ss_dssp SSCCC--HHHHHHHHHHHHHHHHHHHHHHTSC----C--CCSBEEEECCCTTTTTTTHHHHT
T ss_pred CCCCC--HHHHHHHHHHHHHHHHHHHHHHHHC----C--CCCCEEEEEECCHHHHHHHHHHH
T ss_conf 10089--8999999999999999999999828----9--99976899979889999999998
No 5
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=806.93 Aligned_cols=532 Identities=21% Similarity=0.324 Sum_probs=438.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCC-CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 9889122236999998858974002237-999956972599998996611298777899999999984899044316758
Q 002784 119 MRANALVREPEIHKLWDDHQVFLRVADK-NDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWD 197 (881)
Q Consensus 119 ~r~n~~~~E~~~~~~W~~~~~y~~~~~~-~~~~~f~l~dgPPyaNG~lHiGHaln~il~Dii~R~~~l~G~~V~~~~GwD 197 (881)
|.+|+.++|++||++|+++++|++..+. .++++|++++|||||||.|||||++|++++|+++||++|+||+|+|++|||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 98997887799999998679801470023789828998589988899825521257889999999982898507677358
Q ss_pred CCCCHHHHHHHHHCCCC--------CCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCHHH
Q ss_conf 89937999999753521--------00579947989--99999999999999999998155335699866895--00113
Q 002784 198 CHGLPIELKVLQSLDED--------AKKDLTPSKLR--AKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLD--PEYEA 265 (881)
Q Consensus 198 ~hGlpie~~a~k~~~~~--------~~~~~~~~~~~--~~~~~~a~~~~~~~~~~f~~lGi~~DW~~~y~T~d--p~y~~ 265 (881)
|||+|||..|++..... ...+++..+++ ..|++|+.++.+.|+++|++||+++||+++|+|+| |.|++
T Consensus 82 ~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~ 161 (810)
T 1wkb_A 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSK 161 (810)
T ss_dssp CCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEEECCCCHHHHH
T ss_conf 98976899999850367138999998709977787878879999999999999999981858836996076578667999
Q ss_pred CE-------ECCCCEECEEEEEEEECCCCCCCCCCCCCC-------------------CC----CCEEEEECCCCCCCCC
Q ss_conf 20-------038824013564765237999851000001-------------------69----8417985275232246
Q 002784 266 AQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEF-------------------LP----DLGLAVWTTTPWTVPA 315 (881)
Q Consensus 266 ~q-------Y~~g~~s~siyv~f~~~~~~~~~~~~l~~~-------------------~~----~~~~~iwTTtPwTl~a 315 (881)
.+ |++|++++ +...+.||+.+.+.|.+. +. +.+++|||||||||||
T Consensus 162 ~v~~~f~~L~~~Gliy~----~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~g 237 (810)
T 1wkb_A 162 FIEWQFWKLKEKGYIVK----GAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYG 237 (810)
T ss_dssp HHHHHHHHHHHTTCEEE----EEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGGG
T ss_pred HHHHHHHHHHHCCCEEE----CCEEEECCCCCCCCCCHHHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCHHHHH
T ss_conf 99999999998799898----77432125875889528788459887654148999970688775699998388437654
Q ss_pred CCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCCCE
Q ss_conf 63165478985799997022358887756678899974347874299996652377998709934997710266555877
Q 002784 316 NAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCR 395 (881)
Q Consensus 316 n~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia~~~~~~l~~~~~~~~~i~~~~~G~~L~g~~ 395 (881)
|+||+|||+.+|+.++..+ +...+.+|+++++++++..+ ...++++.+++|.+|+|++
T Consensus 238 ~~av~v~P~~~y~~~~~~~---------------------~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~G~~l~g~~ 295 (810)
T 1wkb_A 238 VTNMWVNPNATYVKAKVRR---------------------KDKEETWIVSKEAAYKLSFQ-DREIEVIEEFKGEKLIGKY 295 (810)
T ss_dssp CCEEEECTTSCEEEEEEEE---------------------TTEEEEEEEEHHHHHHHTTS-SCEEEEEEECTTTTTTTCE
T ss_pred HHEEEECCCCCEEEEEECC---------------------CCCCEEEEEHHHHHHHHHHH-HCCEEEEEEEECHHHCCCE
T ss_conf 4179988998479999469---------------------87524664189999999854-0463999999804406998
Q ss_pred EECCCCCCCCCEEECCCCCCCCCCCCCEECCCCCCHHHHHHH----------HHHCCC--------CEECCCC-------
Q ss_conf 645889998644643763123699885121789996689999----------992999--------2102489-------
Q 002784 396 YVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTS----------LKYGLP--------ILSPVDD------- 450 (881)
Q Consensus 396 ~~~Pl~~~~~pv~i~~~~V~~~~GTG~Vh~aPahg~~D~~~~----------~k~gL~--------i~~~vd~------- 450 (881)
|.||++++++|| +.++||++++|||+||+|||||++||.++ ++|||| ++++|+.
T Consensus 296 ~~~P~~~~~ipi-~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~ 374 (810)
T 1wkb_A 296 VRNPVSGDEVII-LPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFP 374 (810)
T ss_dssp EECSSSCCEEEE-EECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CC
T ss_pred EECCCCCCEEEE-EECCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHCCCCHHHCCCCCCEEEECCCCCCCCC
T ss_conf 878999973579-8448264898830388578799889999875121145798729970212555612123157755431
Q ss_pred --------------------------------CCCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCCEECCCCCCCCCC
Q ss_conf --------------------------------996432236678922246305999999984397221002433366314
Q 002784 451 --------------------------------EGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDW 498 (881)
Q Consensus 451 --------------------------------~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~ll~~~~~~h~yp~~w 498 (881)
+|+++ .|.|.|+.+. +|++.|++.|++.|.++....+.| +|+||
T Consensus 375 ~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~--~g~~~G~~v~-~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~ 450 (810)
T 1wkb_A 375 AVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQ-EVKEAIAKEMLEKGIAEIMYEFAE-KNVIS 450 (810)
T ss_dssp TTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEEC--SGGGTTEEHH-HHHHHHHHHHHTTTSEEEEEEESS-SCCBC
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE--CCCCCCEEHH-HHHHHHHHHHHHCCCEEEEEECCC-CCCCC
T ss_conf 2333332167773204566666666543025683694--2574982889-869999999995897266776488-97488
Q ss_pred CCCCCEEEE-ECCCCCCCHHH--HHHHHHHHHCCCCC-------------------------------------------
Q ss_conf 899974880-04532335031--79999986205623-------------------------------------------
Q 002784 499 RTKKPTIFR-ATEQWFASVEG--FRQAAMDAIGQVKW------------------------------------------- 532 (881)
Q Consensus 499 Rtk~Pvi~r-~t~QWFi~~~~--lr~~al~~i~~v~~------------------------------------------- 532 (881)
||++|++++ +++|||+++++ +++.+++.+++++|
T Consensus 451 r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~ 530 (810)
T 1wkb_A 451 RFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLS 530 (810)
T ss_dssp TTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTT
T ss_pred CCCCEEEEEECCCCEEEECCHHHHHHHHHHHHCCCEEECCCHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCC
T ss_conf 99987999725774258658177799998603355898700014489886325673145568888728867660025677
Q ss_pred -----------------------------------------------------------------------CCCC-----
Q ss_conf -----------------------------------------------------------------------5998-----
Q 002784 533 -----------------------------------------------------------------------VPPQ----- 536 (881)
Q Consensus 533 -----------------------------------------------------------------------~P~~----- 536 (881)
+|..
T Consensus 531 ~~~iYv~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G 610 (810)
T 1wkb_A 531 DSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSG 610 (810)
T ss_dssp SSSSHHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEE
T ss_pred CCCEEEEHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 87046412321788987676539997894954204640166566760006454099889997628998722884487303
Q ss_pred -----------------------------------------------------CCCCCCCCHHHHHHH-HCCCCCCEECC
Q ss_conf -----------------------------------------------------998888722768765-15888731218
Q 002784 537 -----------------------------------------------------EAPGYGADVLRLWVS-SVDYTGDVMIG 562 (881)
Q Consensus 537 -----------------------------------------------------~~~~yGaD~LRlwva-s~~~~~Dv~~s 562 (881)
++++||+|+||||++ ++++.+|++|+
T Consensus 611 ~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs 690 (810)
T 1wkb_A 611 KDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWR 690 (810)
T ss_dssp GGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEEC
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCEEHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 04120089999999999729652365799976998477041211788389899987729689999998468988885338
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 45778999999997547898872246887777657999997689999999999999999986058489999999999997
Q 002784 563 PQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVD 642 (881)
Q Consensus 563 ~~~l~~~~~~~~KlrNt~rfll~nl~~f~~~~~~~~~~l~~~Dr~ils~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ 642 (881)
++.+++..++++|+||++++++++. .+ ....+...|+|++++++.+++.+.++|++|+|++|++.++.+++++
T Consensus 691 ~~~~~~~~~~l~rl~n~~~~~~~~~---~~----~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~ 763 (810)
T 1wkb_A 691 RKEVGKLRKQIERFYELISQFAEYE---VK----GNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND 763 (810)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC---CC----SCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC---CC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999987356---76----5332788899999999999999999998249999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 66789998200114799995878999-9999999999999860113156999998478
Q 002784 643 LSNFYFDVAKDRLYTGGTTSFTRRSC-QTVLSAHLLSIVRVIAPILPHLAEDVWQNLP 699 (881)
Q Consensus 643 ls~~Yle~~KdrLy~~~~~~~~r~s~-~~vL~~iL~~l~~lLaPilP~~aEEiw~~L~ 699 (881)
+|+|++.+|++ + + ++ +++++++|+.+++||+|||||+|||+|+.|+
T Consensus 764 -~n~yi~~~k~~------~---~-~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 764 -LRWYLRRTEGR------D---D-EAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp -HHHHHHHTTTC------C---C-HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred -HHHHHHHHCCC------C---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -99999874572------1---5-5799999999999999985562088999999639
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=1.00 E-value=1 Score=765.83 Aligned_cols=554 Identities=21% Similarity=0.336 Sum_probs=418.4
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 98891222369999988589740022379999569725999989966112987778999999999848990443167588
Q 002784 119 MRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDC 198 (881)
Q Consensus 119 ~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~l~dgPPyaNG~lHiGHaln~il~Dii~R~~~l~G~~V~~~~GwD~ 198 (881)
|+||+.++|++||++|+++++|++...+.++++|++++||||+||.|||||++|++++|+++||++|+||+|+|++||||
T Consensus 2 ~~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~ 81 (878)
T 2v0c_A 2 EKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDA 81 (878)
T ss_dssp CCCCCTTHHHHHHHHHHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 98997899999999998769814686658999989977899999983512448899999999999965995672062175
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCE-------ECCC
Q ss_conf 993799999975352100579947989999999999999999999981553356998668950011320-------0388
Q 002784 199 HGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEG 271 (881)
Q Consensus 199 hGlpie~~a~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~lGi~~DW~~~y~T~dp~y~~~q-------Y~~g 271 (881)
||+|||.+|++ .+++| ++|+.++++.|+++|++||+++||+++|+|++|.|.+.+ |++|
T Consensus 82 ~Glpie~~a~k-------~g~~~-------~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kG 147 (878)
T 2v0c_A 82 FGLPAENAALK-------FGVHP-------KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKG 147 (878)
T ss_dssp SSHHHHHHHHH-------TTCCH-------HHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-------CCCCH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 25899999998-------39999-------99999999999999999688637677734588899999999999999789
Q ss_pred CEECEEEEEEEECCCCCCCCCCCC--------------------------------------------------------
Q ss_conf 240135647652379998510000--------------------------------------------------------
Q 002784 272 HVSRSIYAVFRMVSAPPSTSGLLN-------------------------------------------------------- 295 (881)
Q Consensus 272 ~~s~siyv~f~~~~~~~~~~~~l~-------------------------------------------------------- 295 (881)
+++++.+..+ ||+.+.+.|.
T Consensus 148 liY~~~~~v~----w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~w 223 (878)
T 2v0c_A 148 LAYRAKGLVN----WCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAW 223 (878)
T ss_dssp CEEEEEEEEE----EETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHH
T ss_pred CEEECCEEEE----EECCCCCCCCHHHHHCCCCCCCCCCCEEEEECCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9897462388----738889886899985687755689851787503236762356899998764267978999999987
Q ss_pred ---------CC---CCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf ---------01---698417985275232246631654789857999970223588877566788999743478742999
Q 002784 296 ---------EF---LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFII 363 (881)
Q Consensus 296 ---------~~---~~~~~~~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 363 (881)
.| ..+.+++||||||||||||+||+|||+++|+..... .+...
T Consensus 224 i~~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~-------------------------~~~~~ 278 (878)
T 2v0c_A 224 IGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAA-------------------------PEKRE 278 (878)
T ss_dssp HCEEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSC-------------------------GGGHH
T ss_pred HCCCCCCEEEEEECCCCCEEEEEECCCHHHHCCEEEEECCCCEEEEHHCC-------------------------CHHHH
T ss_conf 45566715998835888569998378445507479998679743201226-------------------------25689
Q ss_pred EECCCHHHHHHHHCCCEEE-EEECCCCCCCCCEEECCCCCCCCCEEECCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCC
Q ss_conf 9665237799870993499-771026655587764588999864464376312369988512178999668999999299
Q 002784 364 VASDLVPTLEAKWGTKLVI-KKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL 442 (881)
Q Consensus 364 ia~~~~~~l~~~~~~~~~i-~~~~~G~~L~g~~~~~Pl~~~~~pv~i~~~~V~~~~GTG~Vh~aPahg~~D~~~~~k~gL 442 (881)
...++++.+......+-.+ ..+++|. |.|+++.||++++++||| .++||++++|||+||++||||++||.++++|||
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~g~~~~~P~~~~~ipi~-~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L 356 (878)
T 2v0c_A 279 EVLAYVEAAKRKTEIERQAEGREKTGV-FLGAYALNPATGERIPIW-TADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL 356 (878)
T ss_dssp HHHHHHHHHHTSCHHHHHCSSSCCCCE-EEEEEEECTTTCCEEEEE-ECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEE-ECCCEEECCCCCCEEEEE-EECCCCCCCCCCEEEECCCCCHHHHHHHHHCCC
T ss_conf 999999997643335553124401347-618689777889876899-827635789986079678898778999998599
Q ss_pred CCEECCCC---------CCCCCCC-----CCCCCCCEECCCHHHHHHHHHHHCCCCCCEECCC--------CCC-----C
Q ss_conf 92102489---------9964322-----3667892224630599999998439722100243--------336-----6
Q 002784 443 PILSPVDD---------EGKFTEE-----AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYE--------HKY-----P 495 (881)
Q Consensus 443 ~i~~~vd~---------~G~~~~~-----~~~~~G~~v~~~a~~~ii~~L~~~g~ll~~~~~~--------h~y-----p 495 (881)
|++++||+ .|.|+++ .+.|.|+++ .+|++.|++.|++.|.+.....|. ++| |
T Consensus 357 ~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~-~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIP 435 (878)
T 2v0c_A 357 PIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTES-EEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIP 435 (878)
T ss_dssp CCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBH-HHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECC
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCH-HHHHHHHHHHHHHCCCCCCCEEEECCCCHHHCCCCCCCCCC
T ss_conf 81455578775543110014457705843777799599-99999999999977998772687632130000145688540
Q ss_pred --CCC---------------------------------------------CCCCCEEEEE---CCCCCCCHHHHHHHH--
Q ss_conf --314---------------------------------------------8999748800---453233503179999--
Q 002784 496 --YDW---------------------------------------------RTKKPTIFRA---TEQWFASVEGFRQAA-- 523 (881)
Q Consensus 496 --~~w---------------------------------------------Rtk~Pvi~r~---t~QWFi~~~~lr~~a-- 523 (881)
||- .|+.+ ..|. .|+||.|.+.+..-.
T Consensus 436 i~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~cg~~-~~retDtmDtwfdSsw~~~~~~~p 514 (878)
T 2v0c_A 436 MVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGP-AKRDTDTMDTFFDSSWYYLRYTDP 514 (878)
T ss_dssp EEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCSE-EEECCCEECHHHHHTSHHHHTTST
T ss_pred EEEECCCCEEECCHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCC-CEECCCCCCCCCCCCCHHHHCCCC
T ss_conf 8998799758567797430020044310336679895564276527767778876-254366434212342343302585
Q ss_pred --------HHHHCCCCCCCCC-----------------------------------------------------------
Q ss_conf --------9862056235998-----------------------------------------------------------
Q 002784 524 --------MDAIGQVKWVPPQ----------------------------------------------------------- 536 (881)
Q Consensus 524 --------l~~i~~v~~~P~~----------------------------------------------------------- 536 (881)
.+..+ .|+|.+
T Consensus 515 ~~~~~~~~~~~~~--~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~ 592 (878)
T 2v0c_A 515 HNDRLPFDPEKAN--AWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSV 592 (878)
T ss_dssp TCSSSSCCHHHHH--HHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTE
T ss_pred CCCCCCCCHHHHC--CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCEEECCCEECCCCCCCCC
T ss_conf 3224656978871--68997498835678788999999999999872403578753745336648666344166665431
Q ss_pred ----------------------------------------------------------CCCCCCCCHHHHHHHH-CCCCC
Q ss_conf ----------------------------------------------------------9988887227687651-58887
Q 002784 537 ----------------------------------------------------------EAPGYGADVLRLWVSS-VDYTG 557 (881)
Q Consensus 537 ----------------------------------------------------------~~~~yGaD~LRlwvas-~~~~~ 557 (881)
++++||||++|||+++ +++.+
T Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~ 672 (878)
T 2v0c_A 593 VRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPEN 672 (878)
T ss_dssp EECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTS
T ss_pred EECCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHCCCCCCC
T ss_conf 00033222222346730221013554320002579970245678762167873568999987093189999860589777
Q ss_pred CEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 31218457789999999975478988722468877776579999976899999999999999999860584899999999
Q 002784 558 DVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQR 637 (881)
Q Consensus 558 Dv~~s~~~l~~~~~~~~KlrNt~rfll~nl~~f~~~~~~~~~~l~~~Dr~ils~l~~li~~v~~~ye~y~f~~a~~~i~~ 637 (881)
|++|+++.+++..++++|+||.+++.+.++.. .. ..++...+...|+|++++++.++++|+++|++|+|++|++.+++
T Consensus 673 D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~-~~-~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~ 750 (878)
T 2v0c_A 673 EMVWTEEGVQGAWRFLNRIYRRVAEDREALLE-TS-GVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALME 750 (878)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHT-CC-CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCEECHHHHHHHHHHHHHHHHHHHHHHHCCCC-CC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 86158999999999999999999999851565-54-55674438988999999999999999999970569999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECC
Q ss_conf 99997667899982001147999958789999999999999999860113156999998478665556899876435137
Q 002784 638 FIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESK 717 (881)
Q Consensus 638 F~~~~ls~~Yle~~KdrLy~~~~~~~~r~s~~~vL~~iL~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~ 717 (881)
|++ ++++ |.+. +. ++++++++|+.+++||+|||||+|||+|+.|+ . +||+.++
T Consensus 751 f~~-~l~k-~~~~-------~~--------~~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg-~---------~sv~~~~ 803 (878)
T 2v0c_A 751 FLN-ALYE-YRKD-------RP--------VTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW-P---------DSLFEAG 803 (878)
T ss_dssp HHH-HHHH-HHHH-------CC--------SCHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC-S---------SCGGGSC
T ss_pred HHH-HHHH-HCCC-------CH--------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC-C---------CCEEECC
T ss_conf 999-9865-2101-------23--------67999999999999973300599999999728-8---------8534057
Q ss_pred CCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98863001799732578999999999999999999860
Q 002784 718 WPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVART 755 (881)
Q Consensus 718 wP~~~~~~~~~~~~~~~~~~~l~~lr~~v~~~le~~r~ 755 (881)
||++++.+. ..+.++.++++++.++..++..+.
T Consensus 804 wP~~d~~~l-----~~~~~~~~vqvngkvR~~i~v~~~ 836 (878)
T 2v0c_A 804 WPELDEKAL-----EKDVVEVAVQVNGAVAGTIHIPKD 836 (878)
T ss_dssp CCCCCGGGG-----C-----------------------
T ss_pred CCCCCHHHH-----HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 998997887-----798889999607998877435767
No 7
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=1.00 E-value=1 Score=735.03 Aligned_cols=520 Identities=24% Similarity=0.364 Sum_probs=405.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 89988912223699999885897400223799995697259999899661129877789999999998489904431675
Q 002784 117 FGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGW 196 (881)
Q Consensus 117 f~~r~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~l~dgPPyaNG~lHiGHaln~il~Dii~R~~~l~G~~V~~~~Gw 196 (881)
.+.+||+.++|++||++|+++++|+...+ .++++|++++||||+||.|||||++|++++|+++||++|+||+|+|++||
T Consensus 21 m~~~y~~~~iE~kw~~~W~~~~~f~~~~~-~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~ 99 (880)
T 4arc_A 21 MQEQYRPEEIESKVQLHWDEKRTFEVTED-ESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGW 99 (880)
T ss_dssp CCSSCCHHHHHHHHHHHHHHTTTTCCCCC-TTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCC-CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 14569959999999999986698146876-89998899758999989835324488999999999999729936873571
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCE-------EC
Q ss_conf 88993799999975352100579947989999999999999999999981553356998668950011320-------03
Q 002784 197 DCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YP 269 (881)
Q Consensus 197 D~hGlpie~~a~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~lGi~~DW~~~y~T~dp~y~~~q-------Y~ 269 (881)
||||+|||.+|++ .+++| ++|+.++++.|+++|++||+++||+++|+|++|.|.+.+ |+
T Consensus 100 D~~Glpie~~a~~-------~g~~p-------~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~e 165 (880)
T 4arc_A 100 DAFGLPAEGAAVK-------NNTAP-------APWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYK 165 (880)
T ss_dssp CCCSTHHHHHHHH-------TTSCH-------HHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH-------CCCCH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHH
T ss_conf 6658699999998-------29989-------999999999999999982897577888773887899999999999997
Q ss_pred CCCEECEEEEEEEECCCCCCCCCCCCC-----------------------------------------------------
Q ss_conf 882401356476523799985100000-----------------------------------------------------
Q 002784 270 EGHVSRSIYAVFRMVSAPPSTSGLLNE----------------------------------------------------- 296 (881)
Q Consensus 270 ~g~~s~siyv~f~~~~~~~~~~~~l~~----------------------------------------------------- 296 (881)
+|++ |.+...++||+.+.+.|.+
T Consensus 166 kGli----Y~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~ 241 (880)
T 4arc_A 166 KGLV----YKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQR 241 (880)
T ss_dssp TTCE----EEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHH
T ss_pred CCCE----EEECEEEEECCCCCCEECCHHHHCCCCCCCCCCCEEEECCCEEEEECHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 7988----992634763487688805166416857678984179971425886125478899887640356588999998
Q ss_pred ------------C---CCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf ------------1---6984179852752322466316547898579999702235888775667889997434787429
Q 002784 297 ------------F---LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVF 361 (881)
Q Consensus 297 ------------~---~~~~~~~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (881)
| ..+.++.|||||||||+|+++|+|||+.+|+...... +
T Consensus 242 ~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~-------------------------~- 295 (880)
T 4arc_A 242 NWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAEN-------------------------N- 295 (880)
T ss_dssp HHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGG-------------------------C-
T ss_pred HHHCCCCCEEEEEEECCCCCEEEEEECCCHHHCCCEEEEECCCCHHHHHHHCC-------------------------H-
T ss_conf 65044662389988469985589993884341387089989986779987147-------------------------0-
Q ss_pred EEEECCCHHHHHHHHC---C-CEEE-EEECCCCCCCCCEEECCCCCCCCCEEECCCCCCCCCCCCCEECCCCCCHHHHHH
Q ss_conf 9996652377998709---9-3499-771026655587764588999864464376312369988512178999668999
Q 002784 362 IIVASDLVPTLEAKWG---T-KLVI-KKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT 436 (881)
Q Consensus 362 ~iia~~~~~~l~~~~~---~-~~~i-~~~~~G~~L~g~~~~~Pl~~~~~pv~i~~~~V~~~~GTG~Vh~aPahg~~D~~~ 436 (881)
..++.+..... . +..+ ..+.+|. +.|.++.||++++++|||+ ++||++++|||+||++||||++||.+
T Consensus 296 -----~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~P~~~~~ipi~~-~~yV~~~~GTGaV~~~Pahd~~D~~~ 368 (880)
T 4arc_A 296 -----PELAAFIDECRNTKVAEAEMATMEKKGV-DTGFKAVHPLTGEEIPVWA-ANFVLMEYGTGAVMAVPGHDQRDYEF 368 (880)
T ss_dssp -----HHHHHHHTC----------------CEE-EEEEEEECTTTCCEEEEEE-ETTSCSSSTTSEEEECTTTCHHHHHH
T ss_pred -----HHHHHHHHHHHCCCCHHHHHCCCEEECC-CCCCEEECCCCCCEEEEEE-ECCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf -----9999999998606712434302422210-2583895689998857998-37604678986089835898789999
Q ss_pred HHHHCCCCEECCCC---------CCCCCCC-----CCCCCCCEECCCHHHHHHHHHHHCCCCCCEECCC--------CCC
Q ss_conf 99929992102489---------9964322-----3667892224630599999998439722100243--------336
Q 002784 437 SLKYGLPILSPVDD---------EGKFTEE-----AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYE--------HKY 494 (881)
Q Consensus 437 ~~k~gL~i~~~vd~---------~G~~~~~-----~~~~~G~~v~~~a~~~ii~~L~~~g~ll~~~~~~--------h~y 494 (881)
+++||||++++|+. .+.|+++ .+.|.|+++. +|++.|++.|++.|.+.+...|. ++|
T Consensus 369 ~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~-eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRy 447 (880)
T 4arc_A 369 ASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHE-AAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRY 447 (880)
T ss_dssp HHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCCHH-HHHHHHHHHHHHTTSEEEEEEESCCCEECEESCS
T ss_pred HHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHH-HHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEC
T ss_conf 998399814753367665432110131577516257456997999-9999999999976986416899735440112204
Q ss_pred CCCCCCCCCEEE------------------------------------------------EE---CCCCCCCHHHHH---
Q ss_conf 631489997488------------------------------------------------00---453233503179---
Q 002784 495 PYDWRTKKPTIF------------------------------------------------RA---TEQWFASVEGFR--- 520 (881)
Q Consensus 495 p~~wRtk~Pvi~------------------------------------------------r~---t~QWFi~~~~lr--- 520 (881)
|-+.-|+++ |. .|+||.|.+.+.
T Consensus 448 ---WG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cpg~~~~retDtmDtw~dSswy~~r~~ 524 (880)
T 4arc_A 448 ---WGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYT 524 (880)
T ss_dssp ---SSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESSSSEEEECCCEECTTTGGGTHHHHTT
T ss_pred ---CCCCCEEEEECCCCEEECCHHHCCCCCCHHCCCCCCCCCHHHCCCCEEECCCCCCCEECCCCCCCCCCCCHHHHHHC
T ss_conf ---57850089978997585776877422620115478899357675641402589762668976777010728888661
Q ss_pred ----------HHHHHHHCCCCCCCCC------------------------------------------------------
Q ss_conf ----------9999862056235998------------------------------------------------------
Q 002784 521 ----------QAAMDAIGQVKWVPPQ------------------------------------------------------ 536 (881)
Q Consensus 521 ----------~~al~~i~~v~~~P~~------------------------------------------------------ 536 (881)
....+ .|+|.+
T Consensus 525 ~p~~~~~~~~~~~~~-----~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~ 599 (880)
T 4arc_A 525 CPQYKEGMLDSEAAN-----YWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGE 599 (880)
T ss_dssp STTCCSSSCCHHHHH-----HHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECT
T ss_pred CCCCCCCCCCHHHHH-----CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEECEEEECCEECCCC
T ss_conf 997434445857785-----158924810353467888989999999999822436788768858833296123101256
Q ss_pred -----------------------------------------------------CCCCCCCCHHHHHHHHC-CCCCCEECC
Q ss_conf -----------------------------------------------------99888872276876515-888731218
Q 002784 537 -----------------------------------------------------EAPGYGADVLRLWVSSV-DYTGDVMIG 562 (881)
Q Consensus 537 -----------------------------------------------------~~~~yGaD~LRlwvas~-~~~~Dv~~s 562 (881)
++.+||||++|||+++. .+.+|++|+
T Consensus 600 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s 679 (880)
T 4arc_A 600 NGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQ 679 (880)
T ss_dssp TSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECC
T ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 78501017788100124555421000147862125555324686999789899998809328999998448877886148
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
Q ss_conf 45778999999997547898872246887777657999997689999999999999999986-05848999999999999
Q 002784 563 PQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFIIV 641 (881)
Q Consensus 563 ~~~l~~~~~~~~KlrNt~rfll~nl~~f~~~~~~~~~~l~~~Dr~ils~l~~li~~v~~~ye-~y~f~~a~~~i~~F~~~ 641 (881)
++.+.++.++++|+||++++.+.+... .......+...|+|+++++++++++|+++|+ +|+|+.|++.+++|++
T Consensus 680 ~~~ie~a~rfl~rlwn~~~~~~~~~~~----~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn- 754 (880)
T 4arc_A 680 ESGVEGANRFLKRVWKLVYEHTAKGDV----AALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMN- 754 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCC----CCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-
T ss_conf 999999999999999999998742554----556633278778999999999999999999865564699999999999-
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 76678999820011479999587899999999999999998601131569999984786655568998764351379886
Q 002784 642 DLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVL 721 (881)
Q Consensus 642 ~ls~~Yle~~KdrLy~~~~~~~~r~s~~~vL~~iL~~l~~lLaPilP~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~ 721 (881)
++++ | .. ++ .+++.+++++++.+++||+||+||+|||+|+.|+.. +||+.++||++
T Consensus 755 ~l~k-~---------~~--~~---~~~~~~l~~~l~~ll~LLaPf~PhiaEElW~~Lg~~---------~sv~~~~wP~~ 810 (880)
T 4arc_A 755 KLAK-A---------PT--DG---EQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGE---------GDIDNAPWPVA 810 (880)
T ss_dssp HHHT-S---------CC--SS---HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS---------SCGGGSCCCCC
T ss_pred HHHH-H---------HC--CC---HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC---------CEEEECCCCCC
T ss_conf 9986-3---------12--43---678999999999999997302099999999972899---------74785789988
Q ss_pred CHHCC
Q ss_conf 30017
Q 002784 722 DEKWR 726 (881)
Q Consensus 722 ~~~~~ 726 (881)
++.+.
T Consensus 811 d~~~l 815 (880)
T 4arc_A 811 DEKAM 815 (880)
T ss_dssp CHHHH
T ss_pred CHHHH
T ss_conf 97783
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=1.00 E-value=1 Score=476.75 Aligned_cols=454 Identities=16% Similarity=0.184 Sum_probs=285.0
Q ss_pred CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 99956972599998996611298777899999999984899044316758899379999997535210057994798999
Q 002784 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (881)
Q Consensus 148 ~~~~f~l~dgPPyaNG~lHiGHaln~il~Dii~R~~~l~G~~V~~~~GwD~hGlpie~~a~k~~~~~~~~~~~~~~~~~~ 227 (881)
..++|+|++|||||||.||||||+|++++|+++||++|+||+|+|++||||||+|||.+|++ ++++|
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k-------~g~~~------ 73 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ-------KQVSP------ 73 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHH-------TTSCH------
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH-------CCCCH------
T ss_conf 89988983899888985456778999999999999994199740448327376999999998-------49999------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCE-------ECCCCEECEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999999981553356998668950011320-------038824013564765237999851000001698
Q 002784 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPD 300 (881)
Q Consensus 228 ~~~~a~~~~~~~~~~f~~lGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siyv~f~~~~~~~~~~~~l~~~~~~ 300 (881)
++|++++++.++++|++||++.|| +++||||.|.+.+ |++|+++++.+..+ ||+.+.+.+. +
T Consensus 74 -~e~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~----~~~~~~~~l~----d 142 (542)
T 3u1f_A 74 -YDFTTAVAGEFKKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGW----YSISDESFLT----P 142 (542)
T ss_dssp -HHHHHHHHHHHHHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEE----EETTTTEEEC----G
T ss_pred -HHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEE----EECCCCCCCH----H
T ss_conf -999999999999999993994675--8647988999999999999965696796011488----6046763001----2
Q ss_pred CEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-ECCCHHHHHHHHC-C
Q ss_conf 4179852752322466316547898579999702235888775667889997434787429999-6652377998709-9
Q 002784 301 LGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIV-ASDLVPTLEAKWG-T 378 (881)
Q Consensus 301 ~~~~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-a~~~~~~l~~~~~-~ 378 (881)
..+.- + ..+..+.+.... .-|........+.+.+ .++..+.+..... .
T Consensus 143 ~~v~~-~-------------~~~~g~~~~~~~----------------~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~ 192 (542)
T 3u1f_A 143 QNITD-G-------------VDKDGNPCKVSL----------------ESGHVVTWVSEENYMFRLSAFRERLLEWYHAN 192 (542)
T ss_dssp GGEEE-E-------------ECTTSCEEEEET----------------TTCCBEEEEEEEEEEECGGGGHHHHHHHHHHC
T ss_pred HHHHC-C-------------CCCCCCCCCCCC----------------CCCCCCEEECCCCCEECCHHHHHHHHHHHHHC
T ss_conf 34201-1-------------134676545557----------------89980024315421001215789998777504
Q ss_pred CEEEEEECCCC--------CCCCCEEECCCC---CCCCCEEECCC-----CCCCCCCCCCEECCCCCCHHHHHHHHHHCC
Q ss_conf 34997710266--------555877645889---99864464376-----312369988512178999668999999299
Q 002784 379 KLVIKKTLAGS--------DLENCRYVHPVD---NRQCPVVIGGD-----YITTESGTGLVHTAPGHGQEDYVTSLKYGL 442 (881)
Q Consensus 379 ~~~i~~~~~G~--------~L~g~~~~~Pl~---~~~~pv~i~~~-----~V~~~~GTG~Vh~aPahg~~D~~~~~k~gL 442 (881)
+..+..+.... .+.......+.. +-.+|+ |++ +|..|.- .-|..+.++
T Consensus 193 ~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipi--P~~~~~~~~vw~da~------------~~~~~~~~~-- 256 (542)
T 3u1f_A 193 PGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPV--PGNPDHXVYVWLDAL------------TNYLTGSRL-- 256 (542)
T ss_dssp TTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEE--TTEEEEEECHHHHHH------------THHHHHHTE--
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCEEEEEEECCC------------HHHHHHHHC--
T ss_conf 6666872456767554540564467455556767789865--888672025652031------------011124431--
Q ss_pred CCEECCCCCCCCC------------CCCCCCCCCEECCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCEEEEECC
Q ss_conf 9210248999643------------2236678922246305999999984397221002433366314899974880045
Q 002784 443 PILSPVDDEGKFT------------EEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATE 510 (881)
Q Consensus 443 ~i~~~vd~~G~~~------------~~~~~~~G~~v~~~a~~~ii~~L~~~g~ll~~~~~~h~yp~~wRtk~Pvi~r~t~ 510 (881)
..+..|.-. ...-.+.|+++........+..|...|...+...+.|.+
T Consensus 257 ----~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hg~---------------- 316 (542)
T 3u1f_A 257 ----RVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPLPKKIVAHGW---------------- 316 (542)
T ss_dssp ----EECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECC----------------
T ss_pred ----CCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEECCCCC----------------
T ss_conf ----533458864454205666079521887230056335311489987631356520103641----------------
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-CCCCCCEECCHHHHHHH--HHHHHHHHHHHHHHHHCC
Q ss_conf 323350317999998620562359989988887227687651-58887312184577899--999999754789887224
Q 002784 511 QWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQM--SDIYRKLRGTLRYLLGNL 587 (881)
Q Consensus 511 QWFi~~~~lr~~al~~i~~v~~~P~~~~~~yGaD~LRlwvas-~~~~~Dv~~s~~~l~~~--~~~~~KlrNt~rfll~nl 587 (881)
+-.+..+|+++..+.+. |..++.+||||+||||+++ +.+++|++|+++.+... ++++++|||+++++++..
T Consensus 317 -l~~~G~KMSKSlGNvi~-----p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~ 390 (542)
T 3u1f_A 317 -WTKDRKKISKSLGNVFD-----PVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAK 390 (542)
T ss_dssp -CEETTBCCBTTTTBCCC-----HHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTT
T ss_pred -EECCCCEECCCCCCCCC-----HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -61488350304688788-----567876069308899998528633465466888788765577777879999999751
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 68877776579999976899999999999999999860584899999999999976678999820011479999587899
Q 002784 588 HDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRS 667 (881)
Q Consensus 588 ~~f~~~~~~~~~~l~~~Dr~ils~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yle~~KdrLy~~~~~~~~r~s 667 (881)
.+++. .......+...|+|++++++.++++++++|++|+|++|++.|++|+ +++|+|++..||+-... .+..++++
T Consensus 391 ~~~~~-~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~--~~~n~Y~~~~~pw~l~k-~d~~~~~~ 466 (542)
T 3u1f_A 391 INVNG-EWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVL--RAINAYVTDMAPWKLVK-TDPERLRT 466 (542)
T ss_dssp TSTTS-BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHH-HCHHHHHH
T ss_pred HCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCHHHHC-CCHHHHHH
T ss_conf 10257-7786200027799999876424777777888789999999999999--99999999658664435-89999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 9999999999999986011315699999847866
Q 002784 668 CQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 701 (881)
Q Consensus 668 ~~~vL~~iL~~l~~lLaPilP~~aEEiw~~L~~~ 701 (881)
+++++.++++.+++||+|||||+|||||+.|+..
T Consensus 467 ~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~ 500 (542)
T 3u1f_A 467 VLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVP 500 (542)
T ss_dssp HHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999869679999999987999
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=1.00 E-value=1 Score=452.15 Aligned_cols=470 Identities=18% Similarity=0.227 Sum_probs=281.0
Q ss_pred CCEEEECCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 95697259999899661129877-78999999999848990443167588993799999975352100579947989999
Q 002784 150 ENFVLHDGPPYANGNLHMGHALN-KILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (881)
Q Consensus 150 ~~f~l~dgPPyaNG~lHiGHaln-~il~Dii~R~~~l~G~~V~~~~GwD~hGlpie~~a~k~~~~~~~~~~~~~~~~~~~ 228 (881)
++|++++||||+||.|||||++| ++++|+++||+||+||+|+|++||||||+|||.+|++. +++|
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~-------G~~p------- 67 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE-------GRSP------- 67 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-------TCCH-------
T ss_pred CCEEEECCCCCCCCCHHHCHHHCCHHHHHHHHHHHHHCCCCEEECCEECCCCHHHHHHHHHC-------CCCH-------
T ss_conf 87899538988998400030211189999999999966996571360378878999999985-------9999-------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCE-------ECCCCEECEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999999981553356998668950011320-------0388240135647652379998510000016984
Q 002784 229 AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDL 301 (881)
Q Consensus 229 ~~~a~~~~~~~~~~f~~lGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siyv~f~~~~~~~~~~~~l~~~~~~~ 301 (881)
++|++++++.++++|++||++.|| +++|++|.|.+.+ |++|+++++.+..+.. +.+.+.+.+ .
T Consensus 68 ~e~~~~~~~~~~~~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~----~~~~tfl~d----~ 137 (722)
T 1rqg_A 68 REIVDEFHEQIKITFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYC----EHDKMFLPD----R 137 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEB----TTTTBCCCG----G
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC--CEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEEEC----CCCCCCCCH----H
T ss_conf 999999999999999980997899--726888889999999999999789789411666021----888968543----4
Q ss_pred EEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCC---CCCCCC---CCCCCC-CCCCCCCCCCEEEEE-ECCCHHHHH
Q ss_conf 179852752322466316547898579999702235---888775---667889-997434787429999-665237799
Q 002784 302 GLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLE---GDSAAP---ANKKSR-PGNVLKDQKKVFIIV-ASDLVPTLE 373 (881)
Q Consensus 302 ~~~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~---~~~~~~---~~~~~~-~~~~~~~~~~~~~ii-a~~~~~~l~ 373 (881)
++ -.|.|..-. +..|. ..+ +..... .+...+ -|........+.|.+ .++..+.+.
T Consensus 138 ~v--~gtcP~c~~---------~~~~G------d~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~ 200 (722)
T 1rqg_A 138 FV--IGTCPYCGA---------EDQKG------DQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLK 200 (722)
T ss_dssp GC--CSBCSSSCC---------SCCCT------TTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHH
T ss_pred HC--CCCCCCCCC---------CCCCC------CHHHHCCCCCCHHHCCCCCCCCCCCEEEEEEECCEEEEHHHHHHHHH
T ss_conf 30--332676677---------56786------35541366268555038864687967699981528998599999999
Q ss_pred HHHCCCEEEEE--------ECCCCCCCCCEEECCC-CCCCCCEEECC--C---CCCCCCCCCCEECCCCCCHHHHHHHHH
Q ss_conf 87099349977--------1026655587764588-99986446437--6---312369988512178999668999999
Q 002784 374 AKWGTKLVIKK--------TLAGSDLENCRYVHPV-DNRQCPVVIGG--D---YITTESGTGLVHTAPGHGQEDYVTSLK 439 (881)
Q Consensus 374 ~~~~~~~~i~~--------~~~G~~L~g~~~~~Pl-~~~~~pv~i~~--~---~V~~~~GTG~Vh~aPahg~~D~~~~~k 439 (881)
...... .+-. .+ +..|....+...+ .+..+|++..+ + ||..+.-.|.+... .. .+.+
T Consensus 201 ~~~~~~-~wp~~~~~~~~~wl-~~gl~dw~ISR~~~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~-----~~--~~~~ 271 (722)
T 1rqg_A 201 RWIEKQ-PWKPNVKNMVLSWI-EEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISIT-----IE--HFKR 271 (722)
T ss_dssp HHHHSS-CCCHHHHHHHHHHH-TTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHH-----HH--HHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHH-HCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHH-----HH--HHHH
T ss_conf 999858-99989999999999-779865532413568605586246899988999732421113447-----78--7764
Q ss_pred HCCCCEECCCCCCCCCC--C--C--CCCCCCEECCCHHHHHHHHHHHCCC----------CCCEECCCCCCCCCCCCCCC
Q ss_conf 29992102489996432--2--3--6678922246305999999984397----------22100243336631489997
Q 002784 440 YGLPILSPVDDEGKFTE--E--A--GKFSGLDVLGDGNVAVVKYLDEQMS----------LIMEEPYEHKYPYDWRTKKP 503 (881)
Q Consensus 440 ~gL~i~~~vd~~G~~~~--~--~--~~~~G~~v~~~a~~~ii~~L~~~g~----------ll~~~~~~h~yp~~wRtk~P 503 (881)
.|.+ ++--.+.. + . -++.|+++...........|...|. -++...+.|.+
T Consensus 272 ~g~~-----~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~Pk~v~~hG~--------- 337 (722)
T 1rqg_A 272 IGKP-----NEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEY--------- 337 (722)
T ss_dssp TTCT-----TTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECC---------
T ss_pred CCCC-----HHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEE---------
T ss_conf 0980-----18876348889997168873665454303242899960588744332469888888998506---------
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHC-CCCCCEECCHHHHHHH--HHHHHHHHHHH
Q ss_conf 48800453233503179999986205623599899888872276876515-8887312184577899--99999975478
Q 002784 504 TIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQM--SDIYRKLRGTL 580 (881)
Q Consensus 504 vi~r~t~QWFi~~~~lr~~al~~i~~v~~~P~~~~~~yGaD~LRlwvas~-~~~~Dv~~s~~~l~~~--~~~~~KlrNt~ 580 (881)
|-++..+|+++..+.+. |..++.+||+|+||||+++. ++.+|++|+++.+... ++++++++|++
T Consensus 338 --------v~~~G~KMSKS~GNvV~-----p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~ 404 (722)
T 1rqg_A 338 --------LTLEGKKFSTSRNWAIW-----VHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFV 404 (722)
T ss_dssp --------EEETTEECBTTTTBSCB-----HHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHH
T ss_pred --------EEECCEEEEEECCCCCC-----HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf --------99488364000897687-----99999864946999999844998888835889999998899999999999
Q ss_pred HHHHHCCCC-CCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 988722468-87777657-9999976899999999999999999860584899999999999976678999820011479
Q 002784 581 RYLLGNLHD-WRVGNSIS-YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTG 658 (881)
Q Consensus 581 rfll~nl~~-f~~~~~~~-~~~l~~~Dr~ils~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yle~~KdrLy~~ 658 (881)
.+++..+.. ++ ..++ ...+...|+|++++++.+++.+.++|++|+|++|++.+++|+ +++|+|++..|||+++.
T Consensus 405 ~R~~~~~~k~~~--~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~--~~~n~Yi~~~kpw~~~k 480 (722)
T 1rqg_A 405 HRALTFVNRYFD--GVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA--SFGNRYFDHKQPWKTAK 480 (722)
T ss_dssp HHHHHHHHHHST--TBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHTTCHHHHTT
T ss_pred HHHHHHHHHHCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHCCCHHHCC
T ss_conf 999999998537--88888655788899999999999999999998357999999999999--99999998547253237
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 9995878999999999999999986011315699999847866
Q 002784 659 GTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 701 (881)
Q Consensus 659 ~~~~~~r~s~~~vL~~iL~~l~~lLaPilP~~aEEiw~~L~~~ 701 (881)
. +..+...+.+++.++++.+++||+|||||+|||+|+.|+..
T Consensus 481 ~-~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~ 522 (722)
T 1rqg_A 481 E-DKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLD 522 (722)
T ss_dssp T-CHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCC
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 8-99999999999999999999986122547899999974997
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=1.00 E-value=1 Score=394.92 Aligned_cols=451 Identities=17% Similarity=0.217 Sum_probs=266.2
Q ss_pred CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 99995697259999899661129877789999999998489904431675889937999999753521005799479899
Q 002784 147 NDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRA 226 (881)
Q Consensus 147 ~~~~~f~l~dgPPyaNG~lHiGHaln~il~Dii~R~~~l~G~~V~~~~GwD~hGlpie~~a~k~~~~~~~~~~~~~~~~~ 226 (881)
.+++.|++++||||+||.||||||++++++|+++||++|+||+|.|++||||||+|||.+|.+. +.+|
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-------g~~~----- 76 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKE-------GIPA----- 76 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH-------TSCH-----
T ss_pred CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC-------CCCH-----
T ss_conf 8988989961898999973404458789999999999836980055577086648999999986-------9999-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCE-------ECCCCEECEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99999999999999999981553356998668950011320-------03882401356476523799985100000169
Q 002784 227 KAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLP 299 (881)
Q Consensus 227 ~~~~~a~~~~~~~~~~f~~lGi~~DW~~~y~T~dp~y~~~q-------Y~~g~~s~siyv~f~~~~~~~~~~~~l~~~~~ 299 (881)
+++++++++.+++++++||++.| ++++|+++.|...+ +++|+++++.+..+.. +.+
T Consensus 77 --~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~----~~~--------- 139 (524)
T 2x1l_A 77 --AELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYS----IRD--------- 139 (524)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE----TTT---------
T ss_pred --HHHHHHHHHHHHHHHHHCCCCCC--CCEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECC----CCC---------
T ss_conf --99999999999999998098278--7812698889999999999999789979621464136----754---------
Q ss_pred CCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCHHHHHHHHC-
Q ss_conf 841798527523224663165478985799997022358887756678899974347874299996-652377998709-
Q 002784 300 DLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVA-SDLVPTLEAKWG- 377 (881)
Q Consensus 300 ~~~~~iwTTtPwTl~an~av~v~p~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iia-~~~~~~l~~~~~- 377 (881)
.|.+++..+....+...+-+.. |........+.|.+. ++..+.+.+...
T Consensus 140 -----------~t~l~~~ev~~g~~G~~c~~~~------------------g~~v~~~~~~qwF~~l~~~~~~l~~~~~~ 190 (524)
T 2x1l_A 140 -----------ERFFTENETTEQPDGTRIATET------------------GAPVTWTEEQTYFFRLSAYTDRLLALYEE 190 (524)
T ss_dssp -----------TEEECGGGEEECTTSCEEETTT------------------CCBEEEEEEEEEEECGGGSHHHHHHHHHH
T ss_pred -----------CCCCCHHHHCCCCCCCCCCCCC------------------CCCCEEEECCCEEEEHHHHHHHHHHHHHH
T ss_conf -----------7551688840688899561103------------------99163873377686579999999999984
Q ss_pred CCEEEEEE---------CCCCCCCCCEEECCCCCCCCCEEECC--C---CCCCCCCCCCEE--CCCCCCHHHHHHHHHHC
Q ss_conf 93499771---------02665558776458899986446437--6---312369988512--17899966899999929
Q 002784 378 TKLVIKKT---------LAGSDLENCRYVHPVDNRQCPVVIGG--D---YITTESGTGLVH--TAPGHGQEDYVTSLKYG 441 (881)
Q Consensus 378 ~~~~i~~~---------~~G~~L~g~~~~~Pl~~~~~pv~i~~--~---~V~~~~GTG~Vh--~aPahg~~D~~~~~k~g 441 (881)
....+... +. ..+........=.....|+ |. + ||..+.+.+.+. ..|+....++. ++
T Consensus 191 ~~~~i~p~~~~~~~~~~~~-~~l~Dw~iSRqr~~WG~~i--P~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~---~~- 263 (524)
T 2x1l_A 191 HPEFIGPDARRNEIVSFVS-GGLKDLSISRTTFDWGVPV--PDHPDHVMYVWVDALTNYLTGVGFPDTESESFR---RY- 263 (524)
T ss_dssp CGGGEESHHHHHHHHHHHT-TCCCCEECEESSCCSSCEE--TTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHH---HH-
T ss_pred CCCEECCHHHHHHHHHHHH-CCCCCCCEECCCCCCCCCC--CCCCCCEEEEECCCCHHHHHHCCCCCCCHHHHH---HH-
T ss_conf 9980487889999999987-6996311077898758608--999998799966786677977379887617898---61-
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 99210248999643223667892224630599999998439722100243336631489997488004532335031799
Q 002784 442 LPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQ 521 (881)
Q Consensus 442 L~i~~~vd~~G~~~~~~~~~~G~~v~~~a~~~ii~~L~~~g~ll~~~~~~h~yp~~wRtk~Pvi~r~t~QWFi~~~~lr~ 521 (881)
.| +| -.+.|++.........+..|...|...+...+.|.+ +-++..+|++
T Consensus 264 ~p----~d---------i~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~-----------------v~~~G~KMSK 313 (524)
T 2x1l_A 264 WP----AD---------LHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGW-----------------LLNRGEKMSK 313 (524)
T ss_dssp CS----CS---------EEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECC-----------------EEECSCSEET
T ss_pred CC----CE---------EEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEECCE-----------------EEECCCCCCC
T ss_conf 88----71---------799751055757999999999779998849988767-----------------9738861377
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-CCCCCCEECCHHHHHHHHH--HHHHHHHHHHHHHHCCCC-CCCCCCCC
Q ss_conf 9998620562359989988887227687651-5888731218457789999--999975478988722468-87777657
Q 002784 522 AAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSD--IYRKLRGTLRYLLGNLHD-WRVGNSIS 597 (881)
Q Consensus 522 ~al~~i~~v~~~P~~~~~~yGaD~LRlwvas-~~~~~Dv~~s~~~l~~~~~--~~~KlrNt~rfll~nl~~-f~~~~~~~ 597 (881)
+..+.+. |..++.+||+|++|||+++ +.+.+|++|+++.+.+..+ +.++++|.++++...+.. ++ ..++
T Consensus 314 S~GN~v~-----p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~--~~~~ 386 (524)
T 2x1l_A 314 SIGNVVD-----PVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLG--AAVP 386 (524)
T ss_dssp TTEESSC-----HHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHST--TBCC
T ss_pred CCCCCCC-----HHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCC
T ss_conf 5898779-----89999876907999999955998889775999999999999999999999999999998628--9788
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCC--CHHHHHHHHHHHH
Q ss_conf -99999768999999999999999998605848999999999999766789998200-1147999--9587899999999
Q 002784 598 -YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD-RLYTGGT--TSFTRRSCQTVLS 673 (881)
Q Consensus 598 -~~~l~~~Dr~ils~l~~li~~v~~~ye~y~f~~a~~~i~~F~~~~ls~~Yle~~Kd-rLy~~~~--~~~~r~s~~~vL~ 673 (881)
...+...|+|++++++.+++.+.++|++|+|+.|++.+++|++ ++|+|++..|+ +|+.+.. +.....+++.++.
T Consensus 387 ~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~--~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~ 464 (524)
T 2x1l_A 387 DPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLG--AANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTL 464 (524)
T ss_dssp CCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 86556665799999999999999999973789999999999999--9999998448744315756347999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 9999999986011315699999847866
Q 002784 674 AHLLSIVRVIAPILPHLAEDVWQNLPFA 701 (881)
Q Consensus 674 ~iL~~l~~lLaPilP~~aEEiw~~L~~~ 701 (881)
++++.+++||+|||||+|||+|+.|+..
T Consensus 465 ~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 465 EVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999636409999999974999
Done!