RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 002784
(881 letters)
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 834 bits (2156), Expect = 0.0
Identities = 318/454 (70%), Positives = 363/454 (79%), Gaps = 36/454 (7%)
Query: 119 MRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDI 178
MRAN++ REPEI KLW+++QV+ RV+D+N+GE+F LHDGPPYANG+LH+GHALNKILKD
Sbjct: 1 MRANSVTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDF 60
Query: 179 INRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKA 238
INRY+LLQ KV YVPGWDCHGLPIELKVLQSLD++A+K+LTP KLRAKAAKFAK TV
Sbjct: 61 INRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDT 120
Query: 239 QMASFKRYGVWADWNNPYLTLDPEYEAAQ------------------------------- 267
Q SFKRYGVW DW NPYLTLDPEYEAAQ
Sbjct: 121 QRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALA 180
Query: 268 -----YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVN 322
YPEGHVS+SIY F +VS ++ L EFLP L LA+WTTTPWT+PANAAVAVN
Sbjct: 181 EAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVN 240
Query: 323 AKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVI 382
KLQY+VVE+QS E +S + NKK RPGNVLK+Q+K+F+IVA+DLVP LEAKWG KLV+
Sbjct: 241 DKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVV 300
Query: 383 KKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL 442
KT GSDLE CRY+HP+ NR+ PVVIGGDYITTESGTGLVHTAPGHGQEDY+T LKYGL
Sbjct: 301 LKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGL 360
Query: 443 PILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKK 502
P+LSPVDD GKFTEEAG+FSGL VLG+GN AVV+ LDE SL+MEE Y HKYPYDWRTKK
Sbjct: 361 PLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKK 420
Query: 503 PTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 536
PTIFRATEQWFASVEGFRQAA+DAI +VKW+P Q
Sbjct: 421 PTIFRATEQWFASVEGFRQAALDAIDKVKWIPAQ 454
Score = 604 bits (1559), Expect = 0.0
Identities = 242/346 (69%), Positives = 281/346 (81%), Gaps = 4/346 (1%)
Query: 536 QEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNS 595
++ P YGADVLRLWV+SVDYTGDV+IGPQ+L+QMSDIYRKLRGTLRYLLGNLHDW+ N+
Sbjct: 633 KQEPAYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNA 692
Query: 596 ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL 655
+ Y+DLP ID+YALFQLEN+V I ESY++YQFFKIFQI+QRF IVDLSNFY DVAKDRL
Sbjct: 693 VPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRL 752
Query: 656 YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFE 715
Y GGTTSFTRRSCQTVL+AHLLS++R IAPILPHLAED WQNLPF EDGSAAE VFE
Sbjct: 753 YVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQ---EDGSAAESVFE 809
Query: 716 SKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDAS 775
+ WP +E+W +FP ++ FW +LE+R EVNKVLE AR GKLIG+SLEAKVYL DAS
Sbjct: 810 AGWPTPNEEWLSFPAEDVDFWSLLLEVRDEVNKVLESARNGKLIGASLEAKVYLHASDAS 869
Query: 776 LASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVS 835
LA+RL E+C A + AD L+RIFI SQVEV+ S + Y+GEY VEG +VW+GVS
Sbjct: 870 LAARLAELCGASNGADELRRIFITSQVEVVSSEDDETAACGSYTGEY-VEGAGRVWVGVS 928
Query: 836 RAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLAVQPIPSMAAVS 881
RA+GSKCERCWNYS VGSF +HPTLC RCY V+ QP P AA
Sbjct: 929 RADGSKCERCWNYSPAVGSFSDHPTLCERCYPVVIAQPPPLAAAAV 974
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 591 bits (1527), Expect = 0.0
Identities = 199/471 (42%), Positives = 271/471 (57%), Gaps = 75/471 (15%)
Query: 106 YKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGN 164
YK T++LPKT F MRAN REPEI K W+++ ++ ++ + N G F+LHDGPPYANG+
Sbjct: 4 YKDTLNLPKTDFPMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGD 63
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKL 224
+H+GHALNKILKDII + K + + YVPGWDCHGLPIELKV + L + K L+ ++
Sbjct: 64 IHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKK-GKKLSAAEF 122
Query: 225 RAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ----------------- 267
R K ++A V Q FKR GV DW+NPYLT+D +YEA
Sbjct: 123 RKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGL 182
Query: 268 -------------------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTT 308
Y + S SIY F +V L D L +WTT
Sbjct: 183 KPVYWCPDCGSALAEAEVEYHD-KTSPSIYVAFPVVDGK------LAAAFKDASLVIWTT 235
Query: 309 TPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDL 368
TPWT+PAN A+AV+ + Y +VE+ + +K +IVA DL
Sbjct: 236 TPWTLPANQAIAVHPEFDYVLVEV-----------------------EGEK--LIVAKDL 270
Query: 369 VPTLEAKWG-TKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAP 427
V ++ ++G + T G +LE HP +R PV I GD++T ++GTGLVHTAP
Sbjct: 271 VESVLERFGWEDYEVLATFKGKELEGLVAQHPFYDRDSPV-ILGDHVTLDAGTGLVHTAP 329
Query: 428 GHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIME 487
GHG++DYV KYGL +L+PVDD+G++TEEA F+GL V N +++ L+E+ +L+ E
Sbjct: 330 GHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVF-KANPKIIEKLEEKGALLKE 388
Query: 488 EPYEHKYPYDWRTKKPTIFRATEQWFASVE--GFRQAAMDAIGQVKWVPPQ 536
E H YP+ WRTKKP IFRAT QWF S++ G R+ A+ AI +VKW+P
Sbjct: 389 EKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAW 439
Score = 400 bits (1030), Expect = e-125
Identities = 142/331 (42%), Positives = 196/331 (59%), Gaps = 30/331 (9%)
Query: 541 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDW-RVGNSISYD 599
YGAD+LRLWV+S DY+GDV I ++L+Q+++ YR++R TLR+LLGNL+D+ +++ Y+
Sbjct: 610 YGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYE 669
Query: 600 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 659
+L +D++AL +L + + I E+YE+Y F K++Q + F VDLS FY D+ KDRLYT
Sbjct: 670 ELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDA 729
Query: 660 TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWP 719
S RRS QT L L ++VR +APIL AE++WQ LP G E VF +WP
Sbjct: 730 ADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLP-------GEREESVFLEEWP 782
Query: 720 VLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASR 779
+ E + W ++LE+R EVNK LE AR K+IGSSLEA+V L+ D A L S
Sbjct: 783 EVPELADDEELLA--KWEELLEVRDEVNKALEEARKEKVIGSSLEAEVTLYADAALLES- 839
Query: 780 LREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEG 839
D L+ + I+SQVEV E + + + V +AEG
Sbjct: 840 ---------LGDELRFLLIVSQVEVADGPAAAAA----------AEEVEGLAVKVEKAEG 880
Query: 840 SKCERCWNYSTQVGSFVEHPTLCSRCYEVLA 870
KCERCW+Y VGS EHPTLC RC +
Sbjct: 881 EKCERCWHYREDVGSDAEHPTLCGRCVSNVE 911
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 504 bits (1299), Expect = e-165
Identities = 199/475 (41%), Positives = 254/475 (53%), Gaps = 81/475 (17%)
Query: 106 YKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVF--LRVADKNDGENFVLHDGPPYANG 163
YK T++LPKT F MRAN +EP+I K W+++ ++ +R FVLHDGPPYANG
Sbjct: 3 YKDTLNLPKTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANG 62
Query: 164 NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK--DLTP 221
N+H+GHALNKILKDII RYK +Q Y V YVPGWDCHGLPIELKV + L K
Sbjct: 63 NIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGV 122
Query: 222 SKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ-------------- 267
+ R K +FA V Q FKR GVW DW NPY T+DP YE +
Sbjct: 123 EEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLY 182
Query: 268 ----------------------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAV 305
Y + SIY F P L+E + L +
Sbjct: 183 RGYKPVPWSPRCETALAEAEVEYGD-VKDPSIYVKF------PVKDEGLDE---NAYLVI 232
Query: 306 WTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVA 365
WTTTPWT+PAN A+AV+ L Y +VE+ +I+A
Sbjct: 233 WTTTPWTLPANLAIAVHPDLDYVLVEV-------------------------NGEKLILA 267
Query: 366 SDLVPTLEAKWG-TKLVIKKTLAGSDLENCRYVHPVDNRQCPV---VIGGDYITTESGTG 421
LV ++ K G + +T GS+LE RY HP + VI GD++T + GTG
Sbjct: 268 KALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTG 327
Query: 422 LVHTAPGHGQEDYVTSLKYG-LPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDE 480
LVHTAPGHG+EDY KYG L +L+PVDD G++TEEA K+ GL V D N +++ L E
Sbjct: 328 LVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVK-DANKKIIEDLKE 386
Query: 481 QMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPP 535
+ +L+ E EH YP+ WRTK P I+RAT QWF SV+ R + I +V WVP
Sbjct: 387 KGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPD 441
Score = 304 bits (781), Expect = 1e-89
Identities = 129/331 (38%), Positives = 192/331 (58%), Gaps = 21/331 (6%)
Query: 541 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG-NSISYD 599
YGAD+LRLWV+S DY D+ ++L+Q+ ++YRK+R T R+LLGNL D+ +++ +
Sbjct: 620 YGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPE 679
Query: 600 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 659
+L +D++ L +L ++VK +RE+YE+Y F K+ + + F+ DLSN+Y D+ KDRLYT
Sbjct: 680 ELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEA 739
Query: 660 TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWP 719
S RR+ QT L L ++VR++APILP AE++WQNLP E V WP
Sbjct: 740 ADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGER------KEESVHLEDWP 793
Query: 720 VLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASR 779
+DE+ W +L+LR VNK LE AR K+IGSSL AKV ++T+D+ L +
Sbjct: 794 EVDEELIDVEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIYTEDSELLYK 853
Query: 780 LREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEG 839
L+ L ++ I S VEV + + + + D V + V +AEG
Sbjct: 854 LK---------PNLGKVLITSAVEVAK-----ALEALAGAEAEELVDGDGVELTVEKAEG 899
Query: 840 SKCERCWNYSTQVGSFVEHPTLCSRCYEVLA 870
KC RCW+Y T++G +E LC RC +
Sbjct: 900 EKCPRCWHYDTELGEELEEEGLCRRCVRRIQ 930
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 457 bits (1178), Expect = e-148
Identities = 181/474 (38%), Positives = 243/474 (51%), Gaps = 83/474 (17%)
Query: 116 TFGMRANALVREPEIHKLWDDHQVFLRVADKNDGEN-FVLHDGPPYANGNLHMGHALNKI 174
F MR N RE +I W ++ +F +V N G+ F+ HDGPPYANG++H+GHALNKI
Sbjct: 1 KFPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKI 60
Query: 175 LKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKL---RAKAAKF 231
LKDII RYK +Q + V PGWD HGLPIE KV + L KK+++ ++ R K +F
Sbjct: 61 LKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREF 120
Query: 232 AKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ------------------------ 267
A ++ Q F+R GVW DW NPY T+DP YE +Q
Sbjct: 121 ALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSP 180
Query: 268 ------------YPEG---HVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWT 312
Y E SIY F + + + L +WTTTPWT
Sbjct: 181 RCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSL-----LIWTTTPWT 235
Query: 313 VPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTL 372
+P+N A+AV+ +YA+V+ + K + I+A LV L
Sbjct: 236 LPSNLAIAVHPDFEYALVQD-----------------------NTKVEYFILAKKLVEKL 272
Query: 373 EAKWGTKLVIKKTLAGSDLENCRYVHPVDNR------QCPVVIGGDYITTESGTGLVHTA 426
K G+ I KT GSDLE Y HP+ + PVVIGGD++TTE GTG+VHTA
Sbjct: 273 YNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTA 332
Query: 427 PGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDG------NVAVVKYLDE 480
PGHG+EDY KYGL +LSPVD++G +TE F G V N +++ L +
Sbjct: 333 PGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKD 392
Query: 481 QMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 534
+ L+ E H YP+ WRTK P I+RATEQWF + + ++ I +V WVP
Sbjct: 393 KGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIKKVNWVP 446
Score = 188 bits (480), Expect = 1e-49
Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 20/242 (8%)
Query: 541 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLR-GTLRYLL--GNLHDWRVG-NSI 596
YGAD+LRL+V+S D D+ ++L+Q+ + YRK+R T R+LL NL + NS+
Sbjct: 629 YGADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSV 688
Query: 597 SYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLY 656
+ + P D++ L +L ++V+ + E+ E Y F K+ + +Q FI+ +LSN+Y + +DRLY
Sbjct: 689 AVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLY 748
Query: 657 TGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 716
+ +R+ QT L LL++VR++AP LPH AE+++QNLP G E V +
Sbjct: 749 CEAKDN-DKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPG------GEEEESVHLN 801
Query: 717 KWPVLDEK--WRTFP-----VGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYL 769
WP +DE+ V EI L LR NK L +IG SLEA +
Sbjct: 802 LWPEVDEEFIDEALEANMAIVREI--VEAFLALRDAANKKLRQPLKELVIGKSLEAVLKA 859
Query: 770 FT 771
Sbjct: 860 VE 861
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 414 bits (1066), Expect = e-130
Identities = 171/490 (34%), Positives = 248/490 (50%), Gaps = 82/490 (16%)
Query: 106 YKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGN 164
YK T++LP+T F MRA +EPEI W++ ++ ++ ++ G FVLHDGPPYANGN
Sbjct: 9 YKKTLNLPQTAFPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGN 68
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDA--KKDLTPS 222
+H+GHALNKILKD+I R K + + YVPGWDCHGLPIE K+ + K ++ +
Sbjct: 69 IHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVA 128
Query: 223 KLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ--------------- 267
+ R + ++A + + Q FKR GV DW+NPY T+D EA
Sbjct: 129 EFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYR 188
Query: 268 ---------------------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVW 306
Y S +I+ F + G+L+ + +W
Sbjct: 189 GSKPVMWSVVERTALAEAEIEY-HDIESDTIWVKFPVKD----GKGILDS---GTYVVIW 240
Query: 307 TTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVAS 366
TTTPWT+PAN A++ + ++Y + E+ A + ++PG L +VA
Sbjct: 241 TTTPWTIPANRAISYSPDIEYGLYEVT-------GAENDFWAKPGERL--------VVAD 285
Query: 367 DLVPTLEAKWG-TKLVIKKTLAGSDLENCRYVHPVDNRQCPV----VIGGDYITTESGTG 421
L ++ K G + G DLE HP+D V+ GD++T ++GTG
Sbjct: 286 ALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTG 345
Query: 422 LVHTAPGHGQEDYVTSLKYGL-PILSPVDDEGKFTEEAGKFSGLDVL-------GDGNVA 473
VHTAPGHG+ED+ +KYG I VD++G +TE A F G V+ GD N A
Sbjct: 346 FVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKA 405
Query: 474 VVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVE-------GFRQAAMDA 526
V++ L E L+ +H YP+ WR+KKP IFR T QWF S++ R A+DA
Sbjct: 406 VIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDA 465
Query: 527 IGQVKWVPPQ 536
I + ++VP
Sbjct: 466 IDKTRFVPAA 475
Score = 270 bits (693), Expect = 2e-77
Identities = 121/341 (35%), Positives = 172/341 (50%), Gaps = 29/341 (8%)
Query: 533 VPPQE-APGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWR 591
V PQ+ GAD+LRLWV+SVDY+ D IG ++L+Q+S+ YRKLR TLR+LLGNL +
Sbjct: 639 VSPQDVIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFD 698
Query: 592 VG-NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDV 650
G + ++Y DLP +++Y L +L + +RE+Y++Y F +I++ + F+ VDLS FYFD+
Sbjct: 699 PGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDI 758
Query: 651 AKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAA 710
KD LY +S RR+ QTV + + + +APILP AE+ W
Sbjct: 759 RKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYP-------EEE 811
Query: 711 EFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLF 770
V ++P WR + E W K +R V LE R K IGSSLEA ++
Sbjct: 812 VSVHLEQFPETPAFWRDDALAEK--WRKFRAVRDVVTGALEEERAAKRIGSSLEAAPTVY 869
Query: 771 TDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPS-TPNGLIRNIPYSGEYLVEGKDK 829
D L + L + I I SQ+ V P R G
Sbjct: 870 IADPELLAAL--------EGLDFAEICITSQLTVAAGEAPADAFRLDEVEG--------- 912
Query: 830 VWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLA 870
V + V +AEG KC R W + VGS +P + R + L
Sbjct: 913 VAVVVEKAEGEKCARSWRITPDVGSDPYYPDVSPRDAKALR 953
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 366 bits (941), Expect = e-116
Identities = 152/433 (35%), Positives = 216/433 (49%), Gaps = 54/433 (12%)
Query: 129 EIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQN 187
+I++ WD+ F + + G +F +HDGPP A G LH+GHALNK LKDI+ RYK +Q
Sbjct: 1 QIYQFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQG 60
Query: 188 YKVRYVPGWDCHGLPIELKVLQSLDEDAKK---DLTPSKLRAKAAKFAKATVKAQMASFK 244
+ V +VPGWD HGLP E KV + L KK L K R K ++ + FK
Sbjct: 61 FDVLWVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFK 120
Query: 245 RYGVWADWNNPYLTLDPEYEAAQ-------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEF 297
R GV DW+ Y TLDP EAA + +G + R V + + S E+
Sbjct: 121 RLGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEY 180
Query: 298 L----------------PDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSA 341
L +WTTTPWT+P N AVAVN + Y + +
Sbjct: 181 KDVKGPSIHVAFPLADGKGASLVIWTTTPWTLPGNTAVAVNPEFNYVKIRV--------- 231
Query: 342 APANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVD 401
+ I+A L+ +L K I + G +L +Y+HP
Sbjct: 232 ----------------TGEYYILAEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPFV 275
Query: 402 NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKF 461
NR+ P +I DY+ E GTG VH AP HG++DY ++ L ++PVDD+G + EEA +F
Sbjct: 276 NREIP-IIADDYVDMEFGTGAVHIAPAHGEDDYEVGKRHNLEFINPVDDDGTYNEEAPEF 334
Query: 462 SGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQ 521
GL +V+ L E+ L+ EP EH YP+ WR+ P I+RAT QWF ++ +
Sbjct: 335 QGLKRF-KARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKNLAE 393
Query: 522 AAMDAIGQVKWVP 534
AA+ A+ +V++VP
Sbjct: 394 AALKAVEKVQFVP 406
Score = 32.3 bits (74), Expect = 1.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 541 YGADVLRLWVSSVDYTGDV 559
YGAD LRLW++S DY D+
Sbjct: 585 YGADALRLWLASSDYGRDI 603
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 347 bits (892), Expect = e-105
Identities = 144/455 (31%), Positives = 209/455 (45%), Gaps = 88/455 (19%)
Query: 126 REPEIHKLWDDHQVFLRVADKN-DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKL 184
E E+ K W ++ +F + + G FV +DGPP ANG H GH L + +KD++ RYK
Sbjct: 16 LEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKT 75
Query: 185 LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTP---SKLRAKAAKFAKATVKAQMA 241
++ YKV GWD HGLP+EL+V + L KKD+ K K +
Sbjct: 76 MKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEE 135
Query: 242 SFKRYGVWADWNNPYLTLDPEY-EAA-----Q-------YPEGH---------------- 272
+R G W D++NPY TLD EY E+ Q Y +G+
Sbjct: 136 YTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLY-KGYRVVPYCPRCETPLSNH 194
Query: 273 ---------VSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNA 323
S+Y F++ G NE+L WTTTPWT+P+N A+AV+
Sbjct: 195 EVAQGYKDVKDPSVYVKFKL-------KGEENEYL-----LAWTTTPWTLPSNLALAVHP 242
Query: 324 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIK 383
+ Y VE I+A L+ + +
Sbjct: 243 DIDYVKVE-------------------------GGGEVYILAEALLEKVL---KEDYEVV 274
Query: 384 KTLAGSDLENCRYVHP----VDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLK 439
+T GS+LE Y P D + V+ D++TTE GTG+VH AP G++D+ K
Sbjct: 275 ETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKK 334
Query: 440 YGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWR 499
YGLP++ PVDD+G+FTEE ++G V D + +++ L E+ L E YEH YP+ WR
Sbjct: 335 YGLPVVCPVDDDGRFTEEVPDYAGKFVK-DADKEIIRDLKERGLLFKAETYEHSYPHCWR 393
Query: 500 TKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 534
P I+ ATE WF V + ++ ++ W P
Sbjct: 394 CDTPLIYYATESWFIRVTKIKDRMLELNQKINWYP 428
Score = 72.9 bits (180), Expect = 4e-13
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 541 YGADVLRLWV-SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLR------YLLGNLHDW-RV 592
YGAD LR ++ SS D+ +R ++ RK TL L NL +
Sbjct: 610 YGADALRWYLLSSSAPWEDLRFSEDGVR---EVVRKFLLTLWNVYSFFVLYANLDGFDYP 666
Query: 593 GNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAK 652
D L +D++ L +L ++VK + E+ ++Y K + I+ F+ DLSN+Y ++
Sbjct: 667 PAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSR 725
Query: 653 DRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEF 712
R + + + L L ++ R+ AP P +AE+++QNL T ED E
Sbjct: 726 RRFWKEEDDP-DKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNL----TREDA--PES 778
Query: 713 VFESKWPVLDEKWR 726
V + WP +DE
Sbjct: 779 VHLADWPEVDESLI 792
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial isoleucyl tRNA
synthetases. This domain is found in isoleucyl tRNA
synthetases (IleRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. This family includes
bacterial and eukaryotic mitochondrial members. IleRS
catalyzes the transfer of isoleucine to the 3'-end of
its tRNA.
Length = 180
Score = 238 bits (610), Expect = 1e-73
Identities = 81/188 (43%), Positives = 122/188 (64%), Gaps = 9/188 (4%)
Query: 561 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDW-RVGNSISYDDLPMIDQYALFQLENIVKNI 619
I ++L+Q+++ YRK+R T R+LLGNL+D+ +++ Y++L +D+YAL +L ++K +
Sbjct: 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEV 60
Query: 620 RESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSI 679
RE+YE+Y+F K++Q + F VDLS FY D+ KDRLY S RRS QTVL L ++
Sbjct: 61 REAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDAL 120
Query: 680 VRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKI 739
++++APILP AE+VW++LP E VF WP L E+W+ + E W K+
Sbjct: 121 LKLLAPILPFTAEEVWEHLPGE------KKEESVFLEDWPELPEEWKDEELEE--KWEKL 172
Query: 740 LELRTEVN 747
L LR EVN
Sbjct: 173 LALRDEVN 180
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 203 bits (519), Expect = 1e-58
Identities = 70/119 (58%), Positives = 79/119 (66%), Gaps = 3/119 (2%)
Query: 152 FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSL 211
FV HDGPPYANG H GHALNKILKDIINRYK +Q Y V PGWDCHGLPIELKV + L
Sbjct: 3 FVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKEL 62
Query: 212 DEDAKKD---LTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ 267
KKD + ++ AK +FA V Q F+R GVW DW NPY T+DPEY +
Sbjct: 63 GISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESV 121
Score = 58.4 bits (142), Expect = 6e-09
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 490 YEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 536
Y W P I+RAT QWF V + ++A +V W+P
Sbjct: 135 YRGYKVVPW----PLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEW 177
Score = 34.1 bits (79), Expect = 0.28
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 533 VPPQE-APGYGADVLRLWVSSVD-YTGDVMI 561
V PQE YGAD LRLWV+S D Y D+
Sbjct: 308 VDPQEVVDKYGADALRLWVASSDVYAEDLRF 338
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 185 bits (471), Expect = 4e-48
Identities = 131/478 (27%), Positives = 199/478 (41%), Gaps = 108/478 (22%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLL 185
E +I LW + F + +G ++ +DGPP+A G H GH L +KDI+ RY+ +
Sbjct: 14 EEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSM 73
Query: 186 QNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKAT-------VKA 238
+ V GWDCHGLP+E ++ + L + D+ L+ K+ + K
Sbjct: 74 TGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDV----LKMGIDKYNEECRSIVTRYSKE 129
Query: 239 QMASFKRYGVWADWNNPYLTLDPEYEAAQYPEGHVSRSIYAVFRMV-----------SAP 287
+ R G W D+ N Y T+DP++ S++ VF+ + P
Sbjct: 130 WEKTVTRTGRWIDFENDYKTMDPKF----------MESVWWVFKQLFEKGLVYKGFKVMP 179
Query: 288 PST----------SGLLNEFLPDLGLAV---------------WTTTPWTVPANAAVAVN 322
ST +GL + + D + V WTTTPWT+P+N A+ VN
Sbjct: 180 YSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVN 239
Query: 323 AKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDL------VPTLEAKW 376
Y V K KV+I+ S L P +
Sbjct: 240 PNFTYVKVRN----------------------KYTGKVYIVAESRLSALPTAKPKSKKGS 277
Query: 377 GTKLV-----IKKTLAGSDLENCRYVHPV------DNRQCPVVIGGDYITTESGTGLVHT 425
+ + + GS L +Y P+ + V+ DY+T +SGTG+VH
Sbjct: 278 KPENAAEGYEVLAKVPGSSLVGKKYE-PLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHC 336
Query: 426 APGHGQEDYVTSLKYG-------LPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYL 478
AP G++DY L G LP+ PVDD+G FTE+ FSG V D + ++ +
Sbjct: 337 APAFGEDDYRVCLANGIIEKGGNLPV--PVDDDGCFTEKVTDFSGRYV-KDADKDIIAAI 393
Query: 479 DEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 536
+ L+ H YP+ WR+ P I+RA WF VE + ++ Q WVP
Sbjct: 394 KAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDY 451
Score = 42.4 bits (100), Expect = 0.001
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 541 YGADVLRLWVSSVDYTGDVMIGPQVLRQMS-------------DIYRKLRGTLRYLLGNL 587
YGAD LRL+ +I V+R D++ R+L+ N
Sbjct: 632 YGADALRLY----------LINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNA 681
Query: 588 HDWRVGNSISYDDLP---------MIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRF 638
V + L ++D++ +++VK +RE +Y+ + + + +F
Sbjct: 682 KRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKF 741
Query: 639 IIVDLSNFYFDVAKDRL--YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQ 696
I +L+N Y + RL TG R+ + L LL+ +V+AP P E ++Q
Sbjct: 742 I-DNLTNIYVRFNRKRLKGRTGEEDC---RTALSTLYNVLLTSCKVMAPFTPFFTEVLYQ 797
Query: 697 NL 698
NL
Sbjct: 798 NL 799
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 134 bits (338), Expect = 2e-34
Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 152 FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSL 211
F + PPYANG+LH+GHAL I+ D I RYK ++ Y+V ++PGWD HGLPIELK +
Sbjct: 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKA-ERK 60
Query: 212 DEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ 267
KK + + R +F + F+R G+ DW++ Y+T +PEY A
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAV 116
Score = 37.0 bits (86), Expect = 0.033
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 507 RATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVD 554
R TEQWF + F++ + A+ + K VP A W+ S+
Sbjct: 137 RITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEA-----WLESLL 179
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA. This
domain is found mainly hydrophobic tRNA synthetases. The
domain binds to the anticodon of the tRNA.
Length = 148
Score = 126 bits (318), Expect = 9e-34
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 605 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFT 664
D++ L +L ++K + E+YE Y+F + F DLS++Y +++KDRLY S
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPDSD- 59
Query: 665 RRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEK 724
RS QTVL L +++R++AP +P + E++WQ L E + + WP DE
Sbjct: 60 -RSAQTVLYEVLETLLRLLAPFMPFITEELWQKLGK---------KESIHLAPWPEPDEV 109
Query: 725 WRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYL 769
+ ELR E+ + + R+ I SL +V L
Sbjct: 110 EEDE------ELEEEFELRQEIVQAIRKLRSELKIKKSLPLEVVL 148
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 110 bits (278), Expect = 8e-25
Identities = 65/228 (28%), Positives = 97/228 (42%), Gaps = 40/228 (17%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E + +K W+ F + N F + PP G+LH+GHALN ++DII RYK ++
Sbjct: 11 EKKWYKKWEKSGFFKPDGNSN-KPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMK 69
Query: 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKK--DLTPSKLRAKAAKFAK---ATVKAQMA 241
Y V ++PG D G+ ++KV + L + K DL + R K ++ + T+K Q+
Sbjct: 70 GYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQI- 128
Query: 242 SFKRYGVWADWNNPYLTLDPEYEAA-------QYPEGHVSRSIYAVFRMVSAPP------ 288
KR G DW+ T+D A Y +G IY +V+ P
Sbjct: 129 --KRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKG----LIYRGEYLVNWDPKLNTAI 182
Query: 289 --------STSGLLN------EFLPDLGLAVWTTTPWTVPANAAVAVN 322
G L L V TT P T+ + AVAV+
Sbjct: 183 SDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVH 230
Score = 102 bits (255), Expect = 5e-22
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 397 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 456
+ P+ R+ P+ I +Y+ E GTG V P H DY ++ L ++ +D++G E
Sbjct: 245 ILPLTGRKIPI-IADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNE 303
Query: 457 EAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASV 516
AGK+ GL + +V+ L E+ L+ EP+ H WR+ ++QWF V
Sbjct: 304 NAGKYQGLTRF-EARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKV 362
Query: 517 EGFRQAAMDAI--GQVKWVPPQEAPGYGADVLRLWVSSVD 554
E A++A G++K+VP + L W+ ++
Sbjct: 363 EKLADKALEAAEEGEIKFVPKR----MEKRYLN-WLRNIK 397
Score = 89.0 bits (221), Expect = 4e-18
Identities = 66/270 (24%), Positives = 122/270 (45%), Gaps = 24/270 (8%)
Query: 541 YGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYD 599
YGAD LR ++S+ G D+ + + + KL R++L NL D + S +
Sbjct: 543 YGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSD-DLELSGGEE 601
Query: 600 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 659
L + D++ L +L +K +R++ + Y+F + + + FI D ++Y ++ K RLY G
Sbjct: 602 KLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGN 661
Query: 660 TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWP 719
+++ + L L +R++ P +P + E++WQ+ A+ + +P
Sbjct: 662 EAE--KKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFK--------EGADSIMLQSYP 711
Query: 720 VLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASR 779
V+D ++ E K EL E+ + + I + KV L +A A R
Sbjct: 712 VVDAEF-VDEEAE-----KAFELLKEIIVSIRNLKAESNIPPNAPLKVLLIYTEAETAER 765
Query: 780 LREMCTAKHDADTLQRIFIISQVEVLPSTP 809
L K +A ++ S+VEV+ P
Sbjct: 766 L------KLNAVDIKGAINFSEVEVVIEKP 789
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 106 bits (268), Expect = 1e-23
Identities = 67/227 (29%), Positives = 101/227 (44%), Gaps = 39/227 (17%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E + +K W++ F + D F + PP G+LHMGHALN L+DI+ RYK ++
Sbjct: 11 EEKWYKKWEESGYF-KPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMR 69
Query: 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKK--DLTPSKLRAKAAKFAK---ATVKAQMA 241
Y V + PG D G+ ++ V + L + DL + K ++ + T++ Q+
Sbjct: 70 GYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQL- 128
Query: 242 SFKRYGVWADWNNPYLTLDPEY-EAAQ------YPEGHVSRSIYAVFRMVSAPPS--TS- 291
+R GV DW+ T+DP A Q Y +G IY R+V+ P T+
Sbjct: 129 --RRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGL----IYRGERLVNWCPKCRTAI 182
Query: 292 -----------GLLNEF-LPDLG----LAVWTTTPWTVPANAAVAVN 322
G L P L V TT P T+ + AVAV+
Sbjct: 183 SDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVH 229
Score = 97.3 bits (243), Expect = 1e-20
Identities = 47/150 (31%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 390 DLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVD 449
L + P+ R+ P+ I +Y+ E GTG V P H DY ++ LP+++ +D
Sbjct: 237 HLVGKEVILPLVGREIPI-IADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIID 295
Query: 450 DEGKFTEEA-GKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRA 508
++G+ EEA G+F+GLD + +V+ L+EQ L+ EP++H + R P
Sbjct: 296 EDGRINEEAAGEFAGLDRF-EARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLL 354
Query: 509 TEQWFASVEGFRQAAMDAI--GQVKWVPPQ 536
++QWF V + A++A+ G++K+VP +
Sbjct: 355 SKQWFVKVLELAKKALEAVKDGKIKFVPER 384
Score = 95.4 bits (238), Expect = 6e-20
Identities = 65/279 (23%), Positives = 122/279 (43%), Gaps = 31/279 (11%)
Query: 541 YGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYD 599
YGAD LR ++S+ G D+ + + + KL R++L NL D D
Sbjct: 543 YGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDD---LGPDDLD 599
Query: 600 DLPM--IDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYT 657
L + D++ L +L VK + E+ ++Y+F + + + FI D ++Y ++AK RLY
Sbjct: 600 LLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLY- 658
Query: 658 GGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESK 717
GG +R+ + L L +++R++ P +P + E++WQ LP S + +
Sbjct: 659 GGEEE--KRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLP-----GTES----IHLAS 707
Query: 718 WPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLA 777
WP +DE+ E F + E+ + + R + S KV L +
Sbjct: 708 WPEVDEELI-DEEAEKEF-ELLKEIISAIRN----LRAEMNLSPSAPLKVVLVGSEELED 761
Query: 778 SRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNI 816
+ + D ++ + + ++E+L P +
Sbjct: 762 R-------LEANEDDIKGLANLEELEILSPDPEEPPVEV 793
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 97.7 bits (244), Expect = 1e-21
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLD--EDA 215
PP G+LHMGHALN ++DII RYK ++ Y V + PG D G+ ++ V + L
Sbjct: 9 PPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKT 68
Query: 216 KKDLTPSKLRAKAAKFAK---ATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ----- 267
+ DL + K ++ + ++ Q+ KR G DW+ Y T+DP A
Sbjct: 69 RHDLGREEFLEKCWEWKEESGGKIREQL---KRLGASVDWSREYFTMDPGLSRAVQEAFV 125
Query: 268 --YPEGHVSRSIYAV 280
Y +G + R V
Sbjct: 126 RLYEKGLIYRDNRLV 140
Score = 33.4 bits (77), Expect = 0.52
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 498 WRTKKPTIFRATEQWFASVEGFRQAAMDAI--GQVKWVP 534
R+ QWF V+ + A++A+ G +K+VP
Sbjct: 157 SRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVP 195
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 98.5 bits (245), Expect = 8e-21
Identities = 68/264 (25%), Positives = 109/264 (41%), Gaps = 43/264 (16%)
Query: 289 STSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQY-AVVEIQSLLEGDSAAPANKK 347
+ S + + WTTTPWT+P+N A+ VN Y + ++S
Sbjct: 315 NNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKS------------- 361
Query: 348 SRPGNVLKDQKKVFIIVASDLVPTL-EAKWGTK-LVIKKTLAGSDLENCRYVHPVDN--- 402
+V I+ L + E KW + L I G +L+ RY P+
Sbjct: 362 ----------NRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRY-KPLFTNFY 410
Query: 403 ------RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL--P----ILSPVDD 450
+ ++ D++T ++GTG+VH AP +G++D+ K G+ P + P+D
Sbjct: 411 EKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDA 470
Query: 451 EGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATE 510
G FT E + L + NV + K L + L+ H YP+ WR+ P I+RA
Sbjct: 471 NGYFTNEVEEVQNLYIKEADNV-IKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIP 529
Query: 511 QWFASVEGFRQAAMDAIGQVKWVP 534
WF V + W+P
Sbjct: 530 AWFIRVSNSTNELVKNNETTYWIP 553
Score = 87.3 bits (216), Expect = 2e-17
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Query: 122 NALVREPEIHKLWDDHQVFLRVADKNDGEN-FVLHDGPPYANGNLHMGHALNKILKDIIN 180
N + E ++ K W F + ++ +DGPP+A G H GH L I+KD +
Sbjct: 73 NIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVT 132
Query: 181 RYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTP-------SKLRAKAAKFAK 233
RY + V GWDCHGLPIE ++ + + + K+D+ K R K++
Sbjct: 133 RYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSN 192
Query: 234 ATVKAQMASFKRYGVWADWNNPYLTLDPEY 263
VK + +R G W D+ N Y T+D +
Sbjct: 193 EWVK----TVERIGRWIDFKNDYKTMDKTF 218
Score = 39.6 bits (92), Expect = 0.009
Identities = 23/102 (22%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 598 YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYT 657
Y + ++DQ+ ++++ K++ ++Y+ + + + +F I +L+N+Y + +DR+
Sbjct: 806 YKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQF-IENLTNWYIRLNRDRMRG 864
Query: 658 G-GTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 698
G + + C T + HL ++ ++AP P + E ++Q L
Sbjct: 865 SLGEENCLQSLCTTYRTLHLFTV--LMAPFTPFITEYIYQQL 904
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 92.5 bits (231), Expect = 5e-19
Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Query: 397 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 456
+ P+ R+ P+ I +Y+ E GTG V P H D+ ++ LP+++ +D++G E
Sbjct: 247 ILPLVGREIPI-IADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINE 305
Query: 457 EAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASV 516
G++ GLD + A+V L+E L+ EP+ H + R+ ++QWF +
Sbjct: 306 NPGEYQGLDRF-EARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKM 364
Query: 517 EGFRQAAMDAI--GQVKWVPPQ 536
+ + A++A+ G++K+VP +
Sbjct: 365 KPLAKPALEAVENGEIKFVPER 386
Score = 81.3 bits (202), Expect = 1e-15
Identities = 63/270 (23%), Positives = 115/270 (42%), Gaps = 33/270 (12%)
Query: 541 YGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYR----KLRGTLRYLLGNLHDWRVGNS 595
YGAD LR ++++ G D+ + + YR KL R++L NL VG
Sbjct: 538 YGADALRFTLAALASPGRDIRFDEERVEG----YRNFANKLWNASRFVLMNLEGADVGEL 593
Query: 596 ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL 655
++L + D++ L +L V + E+ + Y+F + + + FI + ++Y ++AK L
Sbjct: 594 PDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVL 653
Query: 656 YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFE 715
+R+ + L+ L I+R++ P +P + E++WQ L E +
Sbjct: 654 QEAA-----KRATRATLAYVLEQILRLLHPFMPFITEELWQKLA------PLGIEESIML 702
Query: 716 SKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDAS 775
+ WP DE E + EL T + + R I S + + L DA
Sbjct: 703 APWPEADEAIDEAAEAEF---EWLKELITAIRNI----RAEMNIPPSKKLPLLLKGADAE 755
Query: 776 LASRLREMCTAKHDADTLQRIFIISQVEVL 805
+RL ++R+ + +E+L
Sbjct: 756 DRARLEAN------EAYIKRLARLESLEIL 779
Score = 66.3 bits (163), Expect = 5e-11
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENF--VLHDGPPYANGNLHMGHALNKILKDIINRYKL 184
E + ++ W++ F D N + F V+ PP G+LHMGHALN L+DI+ RYK
Sbjct: 15 EAKWYQKWEEKGYF--KPDDNSKKPFSIVI--PPPNVTGSLHMGHALNNTLQDILIRYKR 70
Query: 185 LQNYKVRYVPGWDCH-GLPIELKVLQSLDEDAKK--DLTPSKLRAKA----AKFAKATVK 237
+Q Y ++PG D H G+ ++ V + L + K DL K K + T+
Sbjct: 71 MQGYNTLWLPGTD-HAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGG-TIT 128
Query: 238 AQMASFKRYGVWADWNNPYLTLDPEYEAA 266
Q+ +R G DW+ T+D A
Sbjct: 129 NQL---RRLGASCDWSRERFTMDEGLSKA 154
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 91.4 bits (228), Expect = 9e-19
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 14/143 (9%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDG--ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKL 184
E + K+W++ + D + + PP +G+LH+GH + D I RY+
Sbjct: 16 EEKWQKIWEEEGTY---KFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQR 72
Query: 185 LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK----DLTPSKLRAKAAKFAKATVKAQM 240
++ Y V + GWD +GLP E KV E D++ + + K
Sbjct: 73 MRGYNVFFPQGWDDNGLPTERKV-----EKYYGIRKDDISREEFIELCRELTDEDEKKFR 127
Query: 241 ASFKRYGVWADWNNPYLTLDPEY 263
++R G+ DW+ Y T+ PEY
Sbjct: 128 ELWRRLGLSVDWSLEYQTISPEY 150
Score = 76.0 bits (188), Expect = 5e-14
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 28/193 (14%)
Query: 541 YGADVLRLWVSS----VDYT---GDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG 593
YGAD +R W +S D V IG ++L ++ + R + +
Sbjct: 551 YGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASR--------FVLHFSADPEP 602
Query: 594 NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD 653
+ + L +D++ L +L +V+ E+ E+Y F K + I+ F + Y ++ K
Sbjct: 603 DKA--EVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKS 660
Query: 654 RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFV 713
R Y G ++S + L L +++R++AP LP + E+VW L GS V
Sbjct: 661 RAY-GEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWS------WLYGGS----V 709
Query: 714 FESKWPVLDEKWR 726
+ WP DE+
Sbjct: 710 HRASWPEPDEELI 722
Score = 62.5 bits (153), Expect = 7e-10
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 439 KYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDW 498
+ LP +D++G+ TE AGK +GL + + +V+ L L +EP +H +
Sbjct: 286 ELNLPTRIIIDEDGRMTEAAGKLAGLTIE-EARKKIVEDLKSGGLLGKQEPIKHNVKFCE 344
Query: 499 RTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPP 535
R P T QWF V ++ ++ ++ W P
Sbjct: 345 RCDTPLEILVTRQWFIKVLDLKEELLERGKEINWYPE 381
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 80.4 bits (199), Expect = 2e-15
Identities = 43/137 (31%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E + K W++ +VF D + E F + PY +G LH+GH N + D+I RYK +Q
Sbjct: 11 EEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQ 70
Query: 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRY 246
Y V + GWD GLP E + K+ AK+ + K
Sbjct: 71 GYNVLHPMGWDAFGLPAE----NAAI----------KIGTDPAKWTYYNIAYMKKQLKSL 116
Query: 247 GVWADWNNPYLTLDPEY 263
G DW + T DPEY
Sbjct: 117 GFSIDWRREFATCDPEY 133
Score = 53.1 bits (128), Expect = 6e-07
Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 51/203 (25%)
Query: 533 VPPQEA-PGYGADVLRLWV-------SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLL 584
V P+EA YGAD +RL++ ++++ + G R L+
Sbjct: 588 VDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEG---------ARRFLQ------- 631
Query: 585 GNLHDWRVGNSISYDDLPMIDQ--YALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVD 642
+ + + + +Q + L +K + E +E+ Q F I +
Sbjct: 632 -RVWNLVKEHLEKLVEELTKEQGKEDRWLLHRTIKKVTEDFEARQTFNT--AIAALME-- 686
Query: 643 LSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAY 702
L N + K T G R + +T VR++AP PH+AE++W+ L
Sbjct: 687 LLN---ALRKYLRRTEGDRKVLREALET--------WVRLLAPFAPHIAEELWEEL---- 731
Query: 703 TLEDGSAAEFVFESKWPVLDEKW 725
FV + WP DE+
Sbjct: 732 -----GNEGFVSNAPWPEPDEEA 749
Score = 43.0 bits (102), Expect = 7e-04
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 397 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 456
++PV+ + PV I +Y+ E GTG V P H + D + KY LPI + EG +
Sbjct: 316 INPVNGEKIPVWIA-NYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGK 374
Query: 457 EA----------GKFSGLDVLGDGNVAVVKYLDEQM 482
+ G GLD + V + L ++
Sbjct: 375 KVYEGEGVLINSGGLDGLDY-EEAKVKIRCGLVKRG 409
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 80.0 bits (197), Expect = 3e-15
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 7/151 (4%)
Query: 390 DLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVD 449
L + HP+ R P+V + + GTG V P H D+ ++GL +++ +
Sbjct: 254 ALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIG 313
Query: 450 DEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIF--R 507
+G+ T EAG +GLD + V + L EQ +P H P + TI
Sbjct: 314 PDGRMTAEAGPLAGLDRF-EARKEVKRLLAEQGLDRGAKP--HVLPLGRCQRSATILEPL 370
Query: 508 ATEQWFASVEGFRQAAMDAI--GQVKWVPPQ 536
++QW+ +E + A++A+ G+ +++P Q
Sbjct: 371 LSDQWYVRIEPLARPAIEAVEQGRTRFIPEQ 401
Score = 65.0 bits (158), Expect = 1e-10
Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 8/188 (4%)
Query: 539 PGYGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSIS 597
YGAD LR ++++ G D+ + + + KL R+ L NL +
Sbjct: 554 EQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGY-QERGED 612
Query: 598 YDDLPMI--DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL 655
L D++ L +L+ V E+ E+++F + F+ +L ++Y ++AK+ L
Sbjct: 613 PARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEAL 672
Query: 656 YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFE 715
RRS Q VL L + R++ P +P + E++W L + A+ V
Sbjct: 673 A--SEDPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGAS--AWADSVLA 728
Query: 716 SKWPVLDE 723
+++P E
Sbjct: 729 AEYPRKGE 736
Score = 47.3 bits (112), Expect = 4e-05
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK 217
PP G+LH+GHAL L+D++ R+K + + ++PG D G+ ++ V + L + KK
Sbjct: 56 PPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKK 115
Query: 218 ---DLTPSKLRAKAAKFAKATVKAQMASFKRY-GVWADWNNPYLTLDPEYEAA 266
DL + + K +++ + G DW T+D A
Sbjct: 116 SRHDLGREAFLERVWAW-KEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRA 167
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of
archaeal, bacterial, and eukaryotic cytoplasmic
isoleucyl tRNA synthetases. This domain is found in
isoleucyl tRNA synthetases (IleRS), which belong to the
class Ia aminoacyl tRNA synthetases. It lies C-terminal
to the catalytic core domain, and recognizes and
specifically binds to the tRNA anticodon. This family
includes bacterial, archaeal, and eukaryotic cytoplasmic
members. IleRS catalyzes the transfer of isoleucine to
the 3'-end of its tRNA.
Length = 183
Score = 72.2 bits (178), Expect = 2e-14
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 7/141 (4%)
Query: 586 NLHDWRVGN-SISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLS 644
NL + G + L ++D++ L +L +++K + E E+Y + + + FI +L+
Sbjct: 29 NLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFI-DELT 87
Query: 645 NFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTL 704
N+Y + R + + T+ LL++ R++AP P + E+++QNL
Sbjct: 88 NWYIRRNRKRFWGEEGDDDKLAAYATLYEV-LLTLSRLMAPFTPFITEEIYQNL----RR 142
Query: 705 EDGSAAEFVFESKWPVLDEKW 725
E G A E V WP +DE
Sbjct: 143 ELGDAPESVHLLDWPEVDESL 163
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA
synthetases. This domain is found in valyl tRNA
synthetases (ValRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ValRS catalyzes the
transfer of valine to the 3'-end of its tRNA.
Length = 135
Score = 70.7 bits (174), Expect = 2e-14
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 581 RYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFII 640
R++L NL D + L + D++ L +L V+ + E+ E+Y+F + + F
Sbjct: 21 RFVLMNLEDDDEPEEDP-ESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFW 79
Query: 641 VDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 698
D ++Y ++ K RLY +++ + L L +I+R++ P +P + E++WQ L
Sbjct: 80 NDFCDWYLELVKPRLYGEDEEE--KKAARATLYYVLETILRLLHPFMPFITEELWQRL 135
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 73.8 bits (182), Expect = 4e-14
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKD 218
PY +G LH+GH + DII RYK +Q Y V + G+D GLP E +
Sbjct: 9 PYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAE----NAAI------ 58
Query: 219 LTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQY 268
K+ + + +K KR G DW + T DPEY
Sbjct: 59 ----KIGRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQ 104
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 73.1 bits (180), Expect = 2e-13
Identities = 43/150 (28%), Positives = 56/150 (37%), Gaps = 33/150 (22%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK- 217
PY NG H+GH I D+ RY L+ Y V +V G D HG IEL A+K
Sbjct: 8 PYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELA--------AEKE 59
Query: 218 DLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPE-YEAAQ------YPE 270
+TP +L + + K K SF + T E Q Y +
Sbjct: 60 GVTPQELVDRYHEEFKELFKKFNISFDDFI---------RTTSERHKELVQEFFLKLYEK 110
Query: 271 GHVSRSIYAVFRMVSAPPSTSGLLNEFLPD 300
G + Y + VS FLPD
Sbjct: 111 GDIYEGEYEGWYCVSD--------ERFLPD 132
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 72.4 bits (178), Expect = 4e-13
Identities = 38/89 (42%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKD 218
PYANG H+GHA IL D+ RYK L+ Y+V +V G D HG IELK Q +
Sbjct: 8 PYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ-------EG 60
Query: 219 LTPSKLRAKAAKFAKATVKAQMASFKRYG 247
LTP +L K + K K SF R+
Sbjct: 61 LTPKELVDKYHEEFKDDWKWLNISFDRFI 89
Score = 30.8 bits (70), Expect = 3.2
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 611 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD--RLYTGGTTSFTRRSC 668
+ ++ I E+ ES++F K + I + D N Y D K C
Sbjct: 418 LINEALEQIDEAIESFEFRKALREI--MKLADRGNKYIDENKPWELFKQSPRLKELLAVC 475
Query: 669 QTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYT 703
+ +LSI+ + PI+P L+E + + L F
Sbjct: 476 --SMLIRVLSIL--LYPIMPKLSEKILKFLNFELE 506
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 69.5 bits (171), Expect = 1e-12
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKD 218
PY NG H+GH +L D+ RY+ L+ Y V +V G D HG IE K ++
Sbjct: 9 PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAE-------EEG 61
Query: 219 LTPSKLRAKAAKFAKATVKAQMASFKRYG 247
+TP +L K + K K SF +
Sbjct: 62 VTPQELCDKYHEIFKDLFKWLNISFDYFI 90
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 70.2 bits (172), Expect = 3e-12
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E + + WD+++ F +V D + + + PY +G LHMGH N + D+++RY ++
Sbjct: 7 EEKWQQKWDENKTF-KVTDDSSKPKYYILSMFPYPSGALHMGHVRNYTITDVLSRYYRMK 65
Query: 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRY 246
Y V + GWD GLP E ++ T A K Q+ +
Sbjct: 66 GYNVLHPIGWDAFGLPAENAAIKR--GIHPAKWT----YENIANM-----KKQLQAL--- 111
Query: 247 GVWADWNNPYLTLDPEY 263
G DW+ T DPEY
Sbjct: 112 GFSYDWDREIATCDPEY 128
Score = 46.3 bits (110), Expect = 7e-05
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 397 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGK--- 453
+HP+ + P+ + +Y+ E GTG V P H + D+ + KYGLPI +D K
Sbjct: 307 IHPLTGEKIPIWVA-NYVLMEYGTGAVMGVPAHDERDFEFAQKYGLPIKPVIDPAEKDLS 365
Query: 454 ----FTEE-----AGKFSGLDVLGDGNVAVVKYLDEQ 481
+TE+ +G+F+GL+ A++ L+++
Sbjct: 366 LTAAYTEDGVLVNSGEFNGLNSSE-ARNAIIDMLEKE 401
Score = 39.0 bits (91), Expect = 0.012
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 671 VLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEK 724
++ +L V V++P PHLAE++W+ L GS + +KWPV+DE
Sbjct: 730 LMLEYLKGFVTVLSPFAPHLAEELWEKL--------GSEPFIIDNAKWPVVDET 775
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 68.1 bits (167), Expect = 9e-12
Identities = 45/150 (30%), Positives = 58/150 (38%), Gaps = 31/150 (20%)
Query: 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK 217
PY NG H+GH + D+ RY L+ Y+V ++ G D HG IELK K+
Sbjct: 13 LPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKA-------EKE 65
Query: 218 DLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPE-YEAAQ------YPE 270
+TP +L K + K KA SF + T PE E Q Y
Sbjct: 66 GITPQELVDKNHEEFKELFKALNISFDNFI---------RTTSPEHKELVQEFFLKLYEN 116
Query: 271 GHVSRSIYAVFRMVSAPPSTSGLLNEFLPD 300
G + Y VS FLPD
Sbjct: 117 GDIYLREYEGLYCVSC--------ERFLPD 138
Score = 40.3 bits (95), Expect = 0.004
Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 27/126 (21%)
Query: 611 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------VAKDRLYTGGTTSFT 664
++ + E+ E Y+F K + I +N Y D +AK+
Sbjct: 425 LAREALEAVAEAMEKYEFRKALEEIMAL--ASRANKYIDEQAPWKLAKED---------K 473
Query: 665 RRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPV 720
R TVL L +VRV+A P +P AE +W L + A F +
Sbjct: 474 RERLATVL-YLALELVRVLAILLYPFMPETAEKIWDQLGL-----EEDARNFTWLGARQP 527
Query: 721 LDEKWR 726
L +
Sbjct: 528 LLPGHK 533
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 68.0 bits (166), Expect = 2e-11
Identities = 108/511 (21%), Positives = 196/511 (38%), Gaps = 90/511 (17%)
Query: 80 SSKRRSRGPVMAAKKAAEGEKKEEGRYKHTVDLPKTTFGMRA----------NALVREPE 129
+ + + K+ E E E+ +D P T FG + + E
Sbjct: 55 GTNVPKKSEKKSRKRDVEDENPED-----FID-PDTPFGQKKRLSSQMAKQYSPSAVEKS 108
Query: 130 IHKLWDDHQVFLRVADKNDGEN-FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNY 188
+ W+ F AD + FV+ PP G LH+GHAL ++D I R+K + Y
Sbjct: 109 WYAWWEKSGYF--GADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGY 166
Query: 189 KVRYVPGWDCHGLPIELKVLQSLDED---AKKDLTPSKLRAKAAKFAKATVKAQMASFKR 245
+VPG D G+ ++ V + L + + D+ + ++ K+ + +R
Sbjct: 167 NALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRR 226
Query: 246 YGVWADWNNPYLTLDPEYEAAQYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAV 305
G DW+ T+D + A V+ + +++ GL+ D+ L
Sbjct: 227 LGASLDWSRECFTMDEQRSKA------VTEAFVRLYK--------EGLIYR---DIRLVN 269
Query: 306 WTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVF---- 361
W T T ++ V Y ++ ++LL+ P K VL
Sbjct: 270 WDCTLRTAISDVEV------DYIDIKERTLLK----VPGYDKPVEFGVLTSFAYPLEGGL 319
Query: 362 --IIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRY--------VHPVDNRQCPVVIGG 411
I+VA+ + T+ + T ++ RY VHP + R+ P++
Sbjct: 320 GEIVVATTRIETM---------LGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPIICDA 370
Query: 412 DYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG-KFSGLDVLGDG 470
+ GTG V P H D+ ++ L ++ D+GK G +F+G+
Sbjct: 371 ILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRF-AA 429
Query: 471 NVAVVKYLDEQMSLIMEEPYEHKYPYDWRTK---KPTIFRATEQWFASVEGFRQAAMDAI 527
AV++ L ++ + E + RT +P I QWF + + A+DA
Sbjct: 430 REAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMI---KPQWFVNCSSMAKQALDAA 486
Query: 528 G-----QVKWVPPQEAPGYGADVLRLWVSSV 553
+++++P Q Y A+ R W+ ++
Sbjct: 487 IDGENKKLEFIPKQ----YLAEWKR-WLENI 512
Score = 39.9 bits (93), Expect = 0.006
Identities = 42/197 (21%), Positives = 80/197 (40%), Gaps = 12/197 (6%)
Query: 535 PQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYR----KLRGTLRYLLGNL-HD 589
P G D LR + S D I +LR + YR KL +R+ + L D
Sbjct: 704 PNGIAECGTDALRFALVSYTAQSD-KINLDILRVVG--YRQWCNKLWNAVRFAMSKLGDD 760
Query: 590 WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 649
+ ++S + +P ++ L L + S ++Y+F + + + + +
Sbjct: 761 YTPPATLSVETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIE 820
Query: 650 VAKDRLYTGGTT-SFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGS 708
K + R + Q L L + +R++ P +P + E++WQ LP +D +
Sbjct: 821 AIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQP---KDHT 877
Query: 709 AAEFVFESKWPVLDEKW 725
+ + S++P E W
Sbjct: 878 RKDSIMISEYPSAVEAW 894
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 66.9 bits (163), Expect = 3e-11
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 32/226 (14%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E I+ W+ F D+ G+ FV+ PP G+LHMGHA+ L+DI+ RY ++
Sbjct: 66 EERIYNWWESQGYFKPNFDRG-GDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMK 124
Query: 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKK--DLTPSKLRAKAAKFAK---ATVKAQMA 241
++PG D G+ +L V + L + K DL + + ++ + T+ Q+
Sbjct: 125 GRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQI- 183
Query: 242 SFKRYGVWADWNNPYLTLDPEYEAA---QYPEGHVSRSIYAVFRMVSAPP----STSGLL 294
KR G DW+ TLD + A + H IY MV+ P + S L
Sbjct: 184 --KRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLE 241
Query: 295 NEFLPDLG----------------LAVWTTTPWTVPANAAVAVNAK 324
E+ + G L + TT P T+ + A+AVN +
Sbjct: 242 VEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPE 287
Score = 61.1 bits (148), Expect = 2e-09
Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 21/191 (10%)
Query: 541 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHD------WRVGN 594
+G D LR ++ D+ + + L KL +++L NL W
Sbjct: 601 FGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHIL 660
Query: 595 SISYDD------LPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYF 648
+ +D LP+ + + + +L ++ ++ SY+ Y F + + I F D +++Y
Sbjct: 661 ACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYI 720
Query: 649 DVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGS 708
+ +K RLY G S R+ Q VL +I++++ P +P + E++WQ LP+
Sbjct: 721 EASKTRLYHSGDNSALSRA-QAVLLYVFENILKLLHPFMPFVTEELWQALPY-------- 771
Query: 709 AAEFVFESKWP 719
E + S WP
Sbjct: 772 RKEALIVSPWP 782
Score = 52.6 bits (126), Expect = 8e-07
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 403 RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFS 462
R P+ I Y+ + GTG++ +PGH DY+ + K GLPIL+ ++ +G E AG +
Sbjct: 307 RHVPI-IADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLY- 364
Query: 463 GLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQA 522
+ + L+E + +EP+ + P R + ++QWF ++E +
Sbjct: 365 ----WFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEK 420
Query: 523 AMDAI--GQVKWVP 534
A+ A+ G++ +P
Sbjct: 421 ALKAVENGELTIIP 434
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 65.4 bits (160), Expect = 1e-10
Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 389 SDLENCRYVHP-VDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSP 447
L +HP + +R+ P++ + + E GTG V P H DY + ++ LP ++
Sbjct: 281 KKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINI 340
Query: 448 VDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIME-EPYEHKYPYDWRTKKPTIF 506
+GK E G+F+G+ D + + L ++M L+ + P + P R+
Sbjct: 341 FTLDGKINENGGEFAGMHRF-DCRRKIEEEL-KEMGLLRDKVPNPMRLPRCSRSGDIVEP 398
Query: 507 RATEQWFASVEGFRQAAMDAI--GQVKWVPPQ 536
QW+ + + + A++A+ G++K +P
Sbjct: 399 MLIPQWYVNCKDMAKRAVEAVRNGELKIIPSS 430
Score = 62.7 bits (153), Expect = 6e-10
Identities = 63/312 (20%), Positives = 127/312 (40%), Gaps = 47/312 (15%)
Query: 526 AIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDI--YR----KLRGT 579
AI K P P G D LR + + YT G + ++ + YR KL
Sbjct: 625 AIELQKKEFPNGIPECGTDALRFGLLA--YTQQ---GRNINLDINRVVGYRHFCNKLWNA 679
Query: 580 LRYLLGNLHDWRVGNSISY------DDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQ 633
+++ L L + + + LP D++ L +L +K + E ++ Y F + Q
Sbjct: 680 VKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQ 739
Query: 634 IIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAED 693
F + +L + Y ++ K RL + + ++ Q VL L +R++ P++P + E+
Sbjct: 740 ATYNFWLYELCDVYLELIKPRL-SKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEE 798
Query: 694 VWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVA 753
++Q LP +E + +K+P + W L E+ ++ +
Sbjct: 799 LYQRLP-----NYLRKSESISIAKYPQPNPGW------------NNEALDEEMKIIMSIV 841
Query: 754 RTGKLIGSSLE------AKVYLFTDDASLASRLREMCTAKHDADTLQR---IFIISQVEV 804
++ + + ++L Y+ DA L + +A++ TL + + +I +E
Sbjct: 842 KSIRSLIATLGIPNKTKPDCYVTAKDAELIELIE---SAENLISTLAKIGSVSVIPPIEE 898
Query: 805 LPSTPNGLIRNI 816
P G ++
Sbjct: 899 EAEVPKGCGFDV 910
Score = 48.5 bits (116), Expect = 1e-05
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 29/173 (16%)
Query: 132 KLWDDHQVFL---RVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNY 188
+ W+ F N G+ FV+ PP G LH+GHAL ++D + RY ++
Sbjct: 39 EWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGD 98
Query: 189 KVRYVPGWDCHGLP----IELKVLQSLDEDAKK--DLTPSKLRAKAAKFAK---ATVKAQ 239
+ +VPG D G+ +E K+++ E+ K DL + K ++ + Q
Sbjct: 99 ETLWVPGTDHAGIATQVVVEKKLMK---EENKTRHDLGREEFLKKVWEWKDKHGNNICNQ 155
Query: 240 MASFKRYGVWADWNNPYLTLDPEYEAA-------QYPEGHVSRSIYAVFRMVS 285
+R G DW+ T+D + A Y +G + R R+V+
Sbjct: 156 ---LRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDT----RLVN 201
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 64.3 bits (158), Expect = 2e-10
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 119 MRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDI 178
R N E + K W++++ F + + + + +VL D PY +G LHMGH N + D+
Sbjct: 3 ERYNPKEIEKKWQKYWEENKTF-KTTEDSSKKYYVL-DMFPYPSGGLHMGHVRNYTIGDV 60
Query: 179 INRYKLLQNYKVRYVPGWDCHGLPIE 204
I RYK +Q Y V + GWD GLP E
Sbjct: 61 IARYKRMQGYNVLHPMGWDAFGLPAE 86
Score = 55.9 bits (136), Expect = 7e-08
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 15/98 (15%)
Query: 397 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI---LSPVDDEGK 453
+HP+ + PV I DY+ + GTG V P H Q D+ + KYGLPI + P D +
Sbjct: 309 IHPLTGEKIPVWIA-DYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDED 367
Query: 454 FTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 481
+EEA G+ GLD + A++ +L+E+
Sbjct: 368 ISEEAYTGDGVLINSGELDGLDS-EEAKEAIIAWLEEK 404
Score = 46.6 bits (112), Expect = 5e-05
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 27/121 (22%)
Query: 605 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFT 664
D+ +L +K + E E +F I + L N + ++
Sbjct: 646 DKELRRKLHKTIKKVTEDIERLRFNTA---IAALME--LVNALYKAEDEQD--------- 691
Query: 665 RRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEK 724
+ VL L +VR++AP PHLAE++W+ L + + WP DE
Sbjct: 692 ----KAVLREALEILVRLLAPFAPHLAEELWEKL---------GHEGSIANAPWPTADEA 738
Query: 725 W 725
Sbjct: 739 A 739
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 61.0 bits (148), Expect = 2e-09
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E + K W++ +F AD +D E F L PY NG +H GH + ++ R++ ++
Sbjct: 4 EKKWQKRWEEAHIF--EADPDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMK 61
Query: 187 NYKVRYVPGWDCHGLPIE--LKVLQSLDEDAKKDLT--PSKLRAKAAKFAKATV------ 236
V + G+ G PI ++++ DE K+ T + R + KF
Sbjct: 62 GKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFS 121
Query: 237 KAQMASFKRYGVWADWNNPYLTLDPEYEA 265
+ ++ K G DW + T DP Y+
Sbjct: 122 REAESACKSMGYSIDWRRSFKTTDPYYDR 150
Score = 49.8 bits (119), Expect = 6e-06
Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 49/239 (20%)
Query: 541 YGADVLRLWV-SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYD 599
+GADV RL++ + + D + +L + + G S+
Sbjct: 638 FGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKES-NLETGEETSF- 695
Query: 600 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 659
ID++ ++ +K E+ E++Q K + FD+ D +
Sbjct: 696 ----IDRWLESRMNAAIKETYEAMENFQTRKAVKYA-----------LFDLQADVDW--- 737
Query: 660 TTSFTRRS---CQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 716
+ RR + VL+ +L + ++++AP PH AE++W+ + +G FV +
Sbjct: 738 ---YRRRGGVNHKDVLARYLETWIKLLAPFAPHFAEEMWEEVG-----NEG----FVSLA 785
Query: 717 KWPVLDEKW--RTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDD 773
K+P E + E Y LR V + E+A+ I +S +VYL+T +
Sbjct: 786 KFPEASEPAVDKEVEAAEEY-------LRNLVRDIQEIAK----IDASKPKRVYLYTSE 833
Score = 32.5 bits (74), Expect = 1.1
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 379 KLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT 436
K + + G + +PV + P+ + +++ T GTG+V + P H +DY+
Sbjct: 262 KYKPIEEVPGKQFIGKKVHNPVVGPEVPI-LPAEFVDTTKGTGVVMSVPAHAPDDYIA 318
>gnl|CDD|203527 pfam06827, zf-FPG_IleRS, Zinc finger found in FPG and IleRS. This
zinc binding domain is found at the C-terminus of
isoleucyl tRNA synthetase and the enzyme
Formamidopyrimidine-DNA glycosylase EC:3.2.2.23.
Length = 30
Score = 52.7 bits (127), Expect = 3e-09
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 839 GSKCERCWNYSTQVGSFVEHPTLCSRCYEV 868
G KC RCWNY VG LC RC +V
Sbjct: 1 GEKCPRCWNYIEDVGQGGRSTFLCPRCQKV 30
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 59.1 bits (144), Expect = 6e-09
Identities = 45/150 (30%), Positives = 62/150 (41%), Gaps = 32/150 (21%)
Query: 159 PYANGNLHMGHALNKILK-DIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK 217
PYANG LH+GH L D+ RY+ L+ +V +V G D HG PIEL K+
Sbjct: 12 PYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAA-------KKE 64
Query: 218 DLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPE-YEAAQ------YPE 270
+TP + A + FK+ G+ ++ T P +E Q Y
Sbjct: 65 GVTP-------QELADKYHEEHKEDFKKLGI--SYDLFTRTTSPNHHEVVQEFFLKLYEN 115
Query: 271 GHVSRSIYAVFRMVSAPPSTSGLLNEFLPD 300
G+ IY + PS FLPD
Sbjct: 116 GY----IYKKTIEQAYCPSD----GRFLPD 137
Score = 37.5 bits (88), Expect = 0.030
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 23/118 (19%)
Query: 591 RVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD- 649
G + +L D+ + + E + K + E E+ +F K + I + +N Y D
Sbjct: 404 YFGGIVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIME--LAREANKYLDE 461
Query: 650 -----VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNL 698
+AK R TVL L++VR++A P LP A+ +W+ L
Sbjct: 462 KAPWKLAKTD----------RERAATVLY-TALNLVRLLAVLLYPFLPFSAQKIWEML 508
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This
is a family of the conserved region of Leucine-tRNA
ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.
Length = 178
Score = 55.6 bits (135), Expect = 8e-09
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 397 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI---LSPVDDEGK 453
+HP+ + P+ I +++ + GTG V P H Q D+ + KY LPI + P D +
Sbjct: 83 IHPITGEKIPIWIA-NFVLMDYGTGAVMAVPAHDQRDFEFAKKYNLPIKQVIKPEDGDED 141
Query: 454 -------FTEEA-----GKFSGLDVLGDGNVAVVKYL 478
+TE+ G+F GLD + A+ + L
Sbjct: 142 DLIMEEAYTEKGILINSGEFDGLDS-EEAKEAIAEKL 177
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 58.7 bits (142), Expect = 1e-08
Identities = 57/246 (23%), Positives = 84/246 (34%), Gaps = 51/246 (20%)
Query: 26 QSSSYRVLSRRTCSSFRKKASVNLFDSRGSSSLKFLSFLNVTCYSICSGDEFCSSSKRRS 85
S R T V+ + S+S F S G S S R
Sbjct: 8 PPPSASSAFRFTSLRLSLFLVVSSAQTPASASSYF-------RRSRRGGV---SRSLTRR 57
Query: 86 RGPVMAAKKAAEGEKKEEGRYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVAD 145
+A + + + + P EP+ + W++++ F R D
Sbjct: 58 AFAAPSALTSTTAKTTPAAKRAY----PFHEI---------EPKWQRYWEENRTF-RTPD 103
Query: 146 KNDGEN---FVLHDGPPYANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGL 201
D +VL D PY +G LH+GH DI+ RYK +Q Y V + GWD GL
Sbjct: 104 DVDTSKPKFYVL-DMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGL 162
Query: 202 PIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKR----YGVWADWNNPYL 257
P E +++ K T +A F+ G DW+
Sbjct: 163 PAEQYAIET------------------GTHPKITTLKNIARFRSQLKSLGFSYDWDREIS 204
Query: 258 TLDPEY 263
T +PEY
Sbjct: 205 TTEPEY 210
Score = 41.0 bits (96), Expect = 0.003
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 394 CRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPV----- 448
++P P+ + DY+ GTG + P H D+ + K+ LPI V
Sbjct: 391 SYAINPATGEAIPIWVA-DYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADG 449
Query: 449 --DDEGKFTEEAGKF-----SGLDVLG 468
DD K G SGLD+ G
Sbjct: 450 NEDDAEKAYTGEGVIVNSSSSGLDING 476
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 56.0 bits (136), Expect = 6e-08
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIE 204
Y NG H+GHA I D + RYK LQ Y V ++ G D HG I+
Sbjct: 14 YPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQ 58
Score = 31.3 bits (72), Expect = 2.4
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 39/105 (37%)
Query: 613 ENIVKNIRESYESYQFFK----IFQIIQRFIIVDLSNFYFD------VAKD-----RLYT 657
E +KN E E QF + ++++I R +N Y D +AKD RL
Sbjct: 392 EETLKNYEELMEELQFSRALEEVWKLISR------ANKYIDETAPWVLAKDEGKKERL-- 443
Query: 658 GGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNL 698
TV+ HL +R +A P +P ++ +++ L
Sbjct: 444 -----------ATVM-YHLAESLRKVAVLLSPFMPETSKKIFEQL 476
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 54.9 bits (133), Expect = 1e-07
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELK 206
Y NG H+GHA + D++ R+K L+ Y V ++ G D HG I+ K
Sbjct: 9 IYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRK 57
Score = 37.9 bits (89), Expect = 0.023
Identities = 38/182 (20%), Positives = 60/182 (32%), Gaps = 42/182 (23%)
Query: 541 YGADVLRLWV---SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNL--------HD 589
YG D +R ++ GD ++ L LGNL
Sbjct: 317 YGVDAVRYFLLREIPFGQDGDF--------SREAFINRINADLANDLGNLAQRTLSMIAK 368
Query: 590 WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 649
G L D+ L +++ +R + ++ F K + I +V +N Y D
Sbjct: 369 NFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAI--LALVRAANKYID 426
Query: 650 ------VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNLP 699
+AK TVL LL ++R IA P++P LA + L
Sbjct: 427 EQAPWSLAKTD----------PERLATVLYT-LLEVLRGIAVLLQPVMPELAAKILDQLG 475
Query: 700 FA 701
Sbjct: 476 VE 477
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 54.8 bits (133), Expect = 1e-07
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ 209
PYANG +H+GH + I DI RY+ ++ ++V +V D HG PI LK +
Sbjct: 11 PYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK 61
Score = 39.7 bits (94), Expect = 0.007
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 25/103 (24%)
Query: 604 IDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------VAKDRLYT 657
D L + E + I E+YE+ +F K + I + D +N Y D +AK
Sbjct: 410 ADPELLEEFEAAAEKIAEAYEAREFRKALREIMA--LADFANKYVDDNEPWKLAKQ---- 463
Query: 658 GGTTSFTRRSCQTVLS-----AHLLSIVRVIAPILPHLAEDVW 695
Q V S L+I + P+LP LAE
Sbjct: 464 ------DGERLQAVCSVGLNLFRALAIY--LKPVLPELAERAE 498
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 54.5 bits (132), Expect = 2e-07
Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 50/239 (20%)
Query: 541 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLR--YLLGNLHDWRVGNSISY 598
YGADV+RL+++S + ++ Q +R L Y L +
Sbjct: 595 YGADVVRLYLTS---SAEL---LQDADWREKEVESVRRQLERFYELAK----ELIEIGGE 644
Query: 599 DDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD-RLYT 657
++L ID++ L +L I+K E+ ES+Q Q ++++ D R Y
Sbjct: 645 EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEA-----------FYELLNDLRWYL 693
Query: 658 GGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESK 717
+ + VL +R++AP PHLAE++W L FV K
Sbjct: 694 RRVGEANNKVLREVLEI----WIRLLAPFTPHLAEELWHKL---------GGEGFVSLEK 740
Query: 718 WPVLDEKW--RTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDA 774
WP DE + E Y +++E ++ ++L+VA+ KVY++
Sbjct: 741 WPEPDESKIDEEAELAEEYV-KRLIE---DIREILKVAKIKP-------KKVYIYVAPD 788
Score = 45.2 bits (108), Expect = 1e-04
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 24/117 (20%)
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPI-------------ELKVLQSL 211
LH+GH + D+I RYK ++ Y V + + G PI +++ +SL
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSL 60
Query: 212 DEDAKKDL----TPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYE 264
+++L P + F++ + KR G DW + T DPEY
Sbjct: 61 YGIPEEELEKFKDPEYI---VEYFSEEAKED----MKRIGYSIDWRREFTTTDPEYS 110
Score = 33.3 bits (77), Expect = 0.61
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 379 KLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYV 435
+ I + + GS+L + +PV ++ P+ + D++ ++GTG+V + P H DYV
Sbjct: 222 DVEIIEEIKGSELIGKKVKNPVTGKEVPI-LPADFVDPDNGTGVVMSVPAHAPYDYV 277
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of
the tRNA. Aminoacyl tRNA synthetases catalyze the
transfer of cognate amino acids to the 3'-end of their
tRNAs by specifically recognizing cognate from
non-cognate amino acids. Members include valyl-,
leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
methionyl-tRNA synthethases. This superfamily also
includes a domain from MshC, an enzyme in the mycothiol
biosynthetic pathway.
Length = 117
Score = 47.5 bits (113), Expect = 2e-06
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 8/122 (6%)
Query: 566 LRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYES 625
L+Q +L L + L + L D+ L +L+ +K + E+
Sbjct: 4 LKQARAFLNRLYRLLSFFRKALGGTQPKWDNE--LLEEADRELLARLQEFIKRTTNALEA 61
Query: 626 YQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAP 685
Q + +F N+Y D K L T R + VL A L+ + +++AP
Sbjct: 62 LDPTTAVQELFKFTNEL--NWYLDELKPALQ----TEELREAVLAVLRAALVVLTKLLAP 115
Query: 686 IL 687
Sbjct: 116 FT 117
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl
tRNA synthetases. This domain is found in methionyl
tRNA synthetases (MetRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon (CAU). MetRS catalyzes the
transfer of methionine to the 3'-end of its tRNA.
Length = 129
Score = 45.2 bits (108), Expect = 1e-05
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 34/135 (25%)
Query: 584 LGNL-HDWRVGNSIS---------YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQ 633
LGNL + R N S + L D+ L + E +++ + E+ E +F K +
Sbjct: 9 LGNLVN--RTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALE 66
Query: 634 IIQRFIIVDLSNFYFD------VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA--- 684
I + +N Y D +AK+ TVL LL ++R++A
Sbjct: 67 EIME--LARAANKYIDETAPWKLAKEE---------DPERLATVLY-VLLELLRILAILL 114
Query: 685 -PILPHLAEDVWQNL 698
P +P AE + L
Sbjct: 115 SPFMPETAEKILDQL 129
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 41.7 bits (98), Expect = 3e-04
Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 19/96 (19%)
Query: 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK 217
NG LH+GH + D + + YKVR + D G I
Sbjct: 5 GITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIG------------- 51
Query: 218 DLTPSKLRAKAAKFAKATVKAQMASFKR-YGVWADW 252
K + AKA V+ + K
Sbjct: 52 -----DPANKKGENAKAFVERWIERIKEDVEYMFLQ 82
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 42.4 bits (100), Expect = 0.001
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 127 EPEIHKLWDDHQVFLRVADKN---DGENFVLHDGPPYANGNLHMGHA--LNKILKDIINR 181
E + K W++ +VF A GE F + PY NG LH+GHA L+K+ +
Sbjct: 19 EVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKL--EFAAA 76
Query: 182 YKLLQNYKVRYVPGWDCHGLPI 203
Y L+ V + C G+PI
Sbjct: 77 YHRLRGANVLLPFAFHCTGMPI 98
Score = 33.5 bits (77), Expect = 0.56
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 678 SIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDE 723
R+I PI PH AE VW+ + ++G F + WPV E
Sbjct: 857 VQTRLITPICPHYAEHVWREI----LKKEG----FAVTAGWPVAGE 894
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal
and eukaryotic cytoplasmic leucyl tRNA synthetases.
This domain is found in leucyl tRNA synthetases (LeuRS),
which belong to the class Ia aminoacyl tRNA synthetases.
It lies C-terminal to the catalytic core domain. In
contrast to other class Ia enzymes, the anticodon is not
used as an identity element in LeuRS (with exceptions
such as Saccharomyces cerevisiae and some other
eukaryotes). No anticodon-binding site can be defined
for this family, which includes archaeal and eukaryotic
cytoplasmic members. LeuRS catalyzes the transfer of
leucine to the 3'-end of its tRNA.
Length = 117
Score = 38.7 bits (91), Expect = 0.002
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 23/111 (20%)
Query: 593 GNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAK 652
++L ID++ L +L ++K E+YE+ QF + + +++
Sbjct: 25 ETEGELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEG-----------LYELQN 73
Query: 653 DRLYTGGTTSFTRRSCQTVLSAHLLS-----IVRVIAPILPHLAEDVWQNL 698
D + R ++ LL R++AP PHLAE++W L
Sbjct: 74 DL-------DWYRERGGAGMNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117
>gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial leucyl tRNA
synthetases. This domain is found in leucyl tRNA
synthetases (LeuRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain. In contrast to other class Ia
enzymes, the anticodon is not used as an identity
element in LeuRS (with exceptions such as Saccharomyces
cerevisiae and some other eukaryotes). No
anticodon-binding site can be defined for this family,
which includes bacterial and eukaryotic mitochondrial
members, as well as LeuRS from the archaeal
Halobacteria. LeuRS catalyzes the transfer of leucine to
the 3'-end of its tRNA.
Length = 117
Score = 37.2 bits (87), Expect = 0.006
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 21/128 (16%)
Query: 576 LRGTLRYL-----LGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFK 630
+ G R+L L + + +L D+ +L +K + E E +F
Sbjct: 6 VEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNT 65
Query: 631 IFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHL 690
I + L N + K VL L ++V ++AP PH+
Sbjct: 66 A---IAALME--LVNALYKYKKKD-----------AQHAAVLREALETLVLLLAPFAPHI 109
Query: 691 AEDVWQNL 698
AE++W+ L
Sbjct: 110 AEELWEEL 117
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 39.7 bits (92), Expect = 0.007
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 147 NDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPI 203
++ + FVL Y N HMG A I D I R++ L KV ++ G D HG I
Sbjct: 66 DEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKI 122
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 35.8 bits (83), Expect = 0.073
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GHA + + D++ RY Y V++V
Sbjct: 23 SHIGHARSAVAFDVLRRYLQALGYDVQFV 51
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 34.9 bits (81), Expect = 0.11
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 166 HMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GHA ++ D++ RY YKVRYV
Sbjct: 35 HIGHARTYVVFDVLRRYLEDLGYKVRYV 62
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 34.3 bits (79), Expect = 0.32
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GHA I+ D++ RY YKV+YV
Sbjct: 35 CHIGHARTAIVFDVLRRYLRYLGYKVQYV 63
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 33.4 bits (77), Expect = 0.54
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 166 HMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GHA ++ D++ RY YKV YV
Sbjct: 37 HIGHARTYVVFDVLRRYLRYLGYKVTYV 64
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 32.3 bits (74), Expect = 1.4
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 13/55 (23%)
Query: 150 ENFVLHDGPP---YANG-----NLHMGHALNKILKDIINRYKLLQNY---KVRYV 193
FV +G Y G + H+GHA + DII R +L++Y V YV
Sbjct: 51 VEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRR--ILEDYFGYDVFYV 103
>gnl|CDD|234403 TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target.
Members of this protein family include secretion targets
for the two main variants of type VII secretion systems
(T7SS), one found in the Actinobacteria, one found in
the Firmicutes. This model was derived through iteration
from pfam06013. The best characterized member of this
family is ESAT-6 from Mycobacterium tuberculosis.
Members of this family usually are ~100 amino acids in
length but occasionally have a long C-terminal
extension.
Length = 90
Score = 29.5 bits (67), Expect = 1.6
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 15/82 (18%)
Query: 559 VMIGPQVLRQMSDIYRKLRGTLRYLLGNLH--------DWRVGNSISYDDL-----PMID 605
+ + P+ LRQ + + K L+ LL L W + ++ P +
Sbjct: 2 IKVDPEELRQAAARFGKTAQELQQLLQRLRSEIDALQGTWEGAAADAFQAEFQQWDPAAE 61
Query: 606 QY--ALFQLENIVKNIRESYES 625
+ AL ++ ++ + +E
Sbjct: 62 RLINALQEISEALRQAADKFEQ 83
>gnl|CDD|224860 COG1949, Orn, Oligoribonuclease (3'->5' exoribonuclease) [RNA
processing and modification].
Length = 184
Score = 31.2 bits (71), Expect = 1.6
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 462 SGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQ 521
+ L++L +G V + DEQ++ M+ +W T+ TE+ AS +
Sbjct: 35 ANLNILAEGPVIAIHQSDEQLAK-MD---------EWNTETHGRSGLTERVKASTVTEAE 84
Query: 522 AAMDAIGQVK-WVPPQEAP 539
A + +K WVP +P
Sbjct: 85 AEAQTLDFLKKWVPKGVSP 103
>gnl|CDD|165432 PHA03161, PHA03161, hypothetical protein; Provisional.
Length = 150
Score = 30.5 bits (68), Expect = 2.0
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 38 CSSFR----KKASVNLFDSRGSSSLKFLSFLNVTCYSICSGDEFCSSSKRRSRGPVMAAK 93
CS+F KKASV+LFD G + FL L+ T S+ + K++S ++ A
Sbjct: 10 CSAFEAEINKKASVSLFDRFGEKNCIFLHQLDHTKKSLIKHENL---KKQKSIEGMLQAV 66
Query: 94 KAAEGEKKEE 103
+ EKK+E
Sbjct: 67 DLSIQEKKKE 76
>gnl|CDD|182360 PRK10293, PRK10293, acyl-CoA esterase; Provisional.
Length = 136
Score = 29.6 bits (66), Expect = 3.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 461 FSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKP 503
L+ +G+GN+ V LD + I ++ E P D RTK+P
Sbjct: 9 LEALNAMGEGNM--VGLLDIRFEHIGDDTLEATMPVDSRTKQP 49
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 30.5 bits (69), Expect = 5.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 159 PYANGNLHMGHALNKILK-DIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ 209
PY N H+G+ + +L D+ RY L+ Y Y+ G D +G E K L+
Sbjct: 26 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE 77
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 411
Score = 29.7 bits (67), Expect = 7.5
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPP---YANG-----NLHMGHALNKILKDI 178
P + L LR+ D DG+ + GP Y G H+GHA + D+
Sbjct: 5 APAVPAL-PGTGPPLRLFDTADGQVRPVEPGPEAGMYVCGITPYDATHLGHAATYLTFDL 63
Query: 179 INRYKLLQNYKVRYV 193
+NR ++V YV
Sbjct: 64 VNRVWRDAGHRVHYV 78
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 45,216,278
Number of extensions: 4499640
Number of successful extensions: 3749
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3628
Number of HSP's successfully gapped: 131
Length of query: 881
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 776
Effective length of database: 6,280,432
Effective search space: 4873615232
Effective search space used: 4873615232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.8 bits)