RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 002784
(881 letters)
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 595 bits (1536), Expect = 0.0
Identities = 178/471 (37%), Positives = 246/471 (52%), Gaps = 77/471 (16%)
Query: 106 YKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGN 164
Y+ T+ +PKT F MR +EP+I + WD + + +KN G E F+LHDGPPYANGN
Sbjct: 3 YEKTLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGN 62
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKL 224
LHMGHALNKILKD I RYK +Q + YVPGWD HGLPIE + + + +K ++ ++
Sbjct: 63 LHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVD--RKKMSTAEF 120
Query: 225 RAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ----------------- 267
R K +FA ++ Q F+R GV D+N+PY+TL PEYEAAQ
Sbjct: 121 REKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGK 180
Query: 268 -------------------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTT 308
Y + S SIY F + D +WTT
Sbjct: 181 KPVYWSPSSESSLAEAEIEYHD-KRSASIYVAFNVKDDK-------GVVDADAKFIIWTT 232
Query: 309 TPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDL 368
TPWT+P+N A+ V+ +L+Y + G+ I+A L
Sbjct: 233 TPWTIPSNVAITVHPELKYGQYNV----NGE---------------------KYIIAEAL 267
Query: 369 VPTLEAKWG---TKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHT 425
+ + ++K G +LE HP +R+ V I GD++TT++GTG VHT
Sbjct: 268 SDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLV-INGDHVTTDAGTGCVHT 326
Query: 426 APGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLI 485
APGHG++DY+ +Y LP++SP+DD+G FTEE G+F G+ N AV L E+ +L+
Sbjct: 327 APGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYD-KANKAVTDLLTEKGALL 385
Query: 486 MEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 536
+ H YP+DWRTKKP IFRAT QWFAS+ RQ +DAI +
Sbjct: 386 KLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNW 436
Score = 406 bits (1047), Expect = e-128
Identities = 126/340 (37%), Positives = 181/340 (53%), Gaps = 31/340 (9%)
Query: 533 VPPQE-APGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWR 591
+ P + GAD+ RLWVSS DY DV I ++L+Q SD YRK+R TLR++LGN++D+
Sbjct: 604 IVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFN 663
Query: 592 -VGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDV 650
+SI +L +D+Y L +L + +YE++ + I+Q +Q FI V+LSNFY D
Sbjct: 664 PDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDY 723
Query: 651 AKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAA 710
KD LY S RRS QTVL L+ + +++APIL H AE+VW + P
Sbjct: 724 GKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTP-------HVKE 776
Query: 711 EFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLF 770
E V + P + E + W + LR +VN+ LE AR K+IG SLEAKV +
Sbjct: 777 ESVHLADMPKVVEVDQALLD----KWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIA 832
Query: 771 TDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKV 830
++D AS D L ++FI+SQV+V+ + +
Sbjct: 833 SNDKFNASEFLT------SFDALHQLFIVSQVKVVDKLDDQ------------ATAYEHG 874
Query: 831 WIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLA 870
I + A+G KCERCWNYS +G+ E LC RC +V+
Sbjct: 875 DIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVK 914
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 426 bits (1098), Expect = e-136
Identities = 125/453 (27%), Positives = 182/453 (40%), Gaps = 83/453 (18%)
Query: 126 REPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKL 184
E E+ W ++F + + G + +++GPP ANG H+GHA + KD+ RYK
Sbjct: 13 LEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKT 72
Query: 185 LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKD---LTPSKLRAKAAKFAKATVKAQMA 241
++ Y GWD HGLP+EL+V + L +K++ + + K A
Sbjct: 73 MRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEA 132
Query: 242 SFKRYGVWADWNNPYLTLDPEYEAAQ-------------YPEGH---------------- 272
+R W D + Y TL+P Y + Y H
Sbjct: 133 FTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLY-RDHKVVPYCPRCGTPLSSH 191
Query: 273 ---------VSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNA 323
S+Y F + L L +WTTTPWT+P N A AV+
Sbjct: 192 EVALGYKEIQDPSVYVRFPLKEPKKLG-------LEKASLLIWTTTPWTLPGNVAAAVHP 244
Query: 324 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIK 383
+ YA + +I+ L L + +
Sbjct: 245 EYTYAAFQ-------------------------VGDEALILEEGLGRKLLGE---GTQVL 276
Query: 384 KTLAGSDLENCRYVHPVDNR--QCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYG 441
KT G LE Y P + V+ DY++ E GTG+VH AP G ED T+ YG
Sbjct: 277 KTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYG 336
Query: 442 LPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTK 501
LP+L VD+EGK E F GL + N A+++ L + L EE Y H YP+ WR
Sbjct: 337 LPLLKTVDEEGKLLVEP--FKGLYFR-EANRAILRDLRGRGLLFKEESYLHSYPHCWRCS 393
Query: 502 KPTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 534
P ++ ATE WF F+ + ++ WVP
Sbjct: 394 TPLMYYATESWFIKNTLFKDELIRNNQEIHWVP 426
Score = 163 bits (416), Expect = 7e-42
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 8/190 (4%)
Query: 541 YGADVLRLWV-SSVDYTGDVMIGPQVLRQM-SDIYRKLRGTLRYLL--GNLHDWRVGNSI 596
+GAD LR ++ S D GP ++R+ D + L + + NL + N
Sbjct: 609 FGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPP 668
Query: 597 SYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLY 656
+ P +D++ L +++++++ + E+ E+Y + ++ F++ DLS +Y + R +
Sbjct: 669 PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFW 728
Query: 657 TGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 716
R + L L+ + + AP P LAE +WQNL A E V +
Sbjct: 729 KNEDAL-DREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLV---RSVRLEAKESVHLA 784
Query: 717 KWPVLDEKWR 726
WP D
Sbjct: 785 DWPEADPALA 794
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 252 bits (646), Expect = 3e-71
Identities = 87/535 (16%), Positives = 164/535 (30%), Gaps = 130/535 (24%)
Query: 120 RANALVREPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGNLHMGHALNKILKDI 178
N E + K W + ++F + F + PY +G+LH+GHA + D+
Sbjct: 3 ELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDV 62
Query: 179 INRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKL----------RAKA 228
I R+K +Q Y V + W G PI + + D K +
Sbjct: 63 IARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDP 122
Query: 229 AKFAKATVKAQMASFKRYGVWADWNNPYLTLD--PEYEAAQ-------YPEGHVSRSIYA 279
K +KA +F R G DW+ + T P + +G++ +
Sbjct: 123 INIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKG--- 179
Query: 280 VFRMVS-APPSTSGLLNE----------------------FLPDLGLAVWTTTPWTVPAN 316
V P + L + + L T P TV
Sbjct: 180 -AHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGV 238
Query: 317 AAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKW 376
+ VN Y +++ KD+++ +I+ +
Sbjct: 239 TNMWVNPNATYVKAKVRR--------------------KDKEETWIVSKEAAYKL--SFQ 276
Query: 377 GTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT 436
++ + + G L +PV + ++ +++ ++ TG+V + P H D+V
Sbjct: 277 DREIEVIEEFKGEKLIGKYVRNPVSGDEVIILP-AEFVDPDNATGVVMSVPAHAPFDHVA 335
Query: 437 S----------LKYGLPI----------LSPVDDEGKFT-------------------EE 457
KY + L ++ G F E+
Sbjct: 336 LEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQ 395
Query: 458 A----------------GKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTK 501
A + G V + A+ K + E+ + + K
Sbjct: 396 ATKTIYKAEYHKGIFKVPPYEGKPVQ-EVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGN 454
Query: 502 KPTIFRATEQWFASV--EGFRQAAMDAIGQVKWVPPQEAPGYGA--DVLRLWVSS 552
+ I +QWF +++ A A+ ++K +P + A D L +
Sbjct: 455 RAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACA 509
Score = 106 bits (266), Expect = 1e-23
Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 30/229 (13%)
Query: 532 WVPPQEA-PGYGADVLRLWV-SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHD 589
+ +A GADV+RL++ S ++ D KLR + +
Sbjct: 658 VLNFIDAIEENGADVVRLYIMSLAEHDSD-------FDWRRKEVGKLRKQIERFYELISQ 710
Query: 590 WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 649
+ +L ID++ L +L +K + E ++ Q I+ DL +Y
Sbjct: 711 FAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDL-RWYLR 769
Query: 650 VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSA 709
+ R + + VL VR++AP PH+ E++W+ L
Sbjct: 770 RTEGR---------DDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGG--------- 811
Query: 710 AEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKL 758
FV +KWP E+W + I + ++ +++EVA+
Sbjct: 812 EGFVSLAKWPEPVEEWWNETIEAE--EEFIRSVMEDIKEIIEVAKIENA 858
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 228 bits (582), Expect = 2e-63
Identities = 86/528 (16%), Positives = 163/528 (30%), Gaps = 130/528 (24%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLL 185
E + K W + ++F + F + PY +G+LH+GHA + D+I R+K +
Sbjct: 10 EEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRM 69
Query: 186 QNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLR----------AKAAKFAKAT 235
Q Y V + W G PI + + D K + K
Sbjct: 70 QGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYF 129
Query: 236 VKAQMASFKRYGVWADWNNPYLTLD--PEYEAAQ-------YPEGHVSRSIYAVFRMVS- 285
+KA +F R G DW+ + T P + +G++ + V
Sbjct: 130 MKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKG----AHRVRW 185
Query: 286 APPSTSGLLNE----------------------FLPDLGLAVWTTTPWTVPANAAVAVNA 323
P + L + + L T P TV + VN
Sbjct: 186 DPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNP 245
Query: 324 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIK 383
Y +++ KD+++ +I+ + ++ +
Sbjct: 246 NATYVKAKVRR--------------------KDKEETWIVSKEAAYKL--SFQDREIEVI 283
Query: 384 KTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTS------ 437
+ G L +PV + ++ +++ ++ TG+V + P H D+V
Sbjct: 284 EEFKGEKLIGKYVRNPVSGDEVIILP-AEFVDPDNATGVVMSVPAHAPFDHVALEDLKRE 342
Query: 438 ----LKYGLPI----------LSPVDDEGKFT-------------------EEA------ 458
KY + L ++ G F E+A
Sbjct: 343 TEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYK 402
Query: 459 ----------GKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRA 508
+ G V + A+ K + E+ + + K + I
Sbjct: 403 AEYHKGIFKVPPYEGKPV-QEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKII 461
Query: 509 TEQWFASV--EGFRQAAMDAIGQVKWVPPQEAPGYGA--DVLRLWVSS 552
+QWF +++ A A+ ++K +P + A D L +
Sbjct: 462 HDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACA 509
Score = 85.8 bits (212), Expect = 3e-17
Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 19/169 (11%)
Query: 532 WVPPQEAPG-YGADVLRLWV-SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHD 589
+ +A GADV+RL++ S ++ D + + KLR + +
Sbjct: 658 VLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVG-------KLRKQIERFYELISQ 710
Query: 590 WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 649
+ +L ID++ L +L +K + E ++ Q FY
Sbjct: 711 FAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWA----------FYSI 760
Query: 650 VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 698
+ R Y T + + VL VR++AP PH+ E++W+ L
Sbjct: 761 MNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKL 809
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
1wk8_A* 1udz_A 1ue0_A
Length = 186
Score = 196 bits (502), Expect = 2e-58
Identities = 67/222 (30%), Positives = 90/222 (40%), Gaps = 42/222 (18%)
Query: 274 SRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQ 333
S+Y F + L L +WTTTPWT+P N A AV+ + YA
Sbjct: 3 DPSVYVRFPLKEPK-------KLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAF--- 52
Query: 334 SLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLEN 393
+ + I + L L G + KT G LE
Sbjct: 53 ---------------------QVGDEALI-LEEGLGRKL---LGEGTPVLKTFPGKALEG 87
Query: 394 CRYVHP---VDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDD 450
Y P + V + DY++ E GTG+VH AP G ED T+ YGLP+L VD+
Sbjct: 88 LPYTPPYPQALEKGYFV-VLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDE 146
Query: 451 EGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEH 492
EGK E F GL + N A+++ L + L EE Y H
Sbjct: 147 EGKLLVEP--FKGLYFR-EANRAILRDLRGRGLLFKEESYLH 185
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 141 bits (356), Expect = 7e-38
Identities = 41/262 (15%), Positives = 84/262 (32%), Gaps = 37/262 (14%)
Query: 273 VSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEI 332
+ Y + ++ P S L ++ L T P T+ V ++Y E
Sbjct: 2 MGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFET 61
Query: 333 QSLLEGDSAAPANKKSRPGNVLKDQKKVFII---VASDLVPTLEAKWGTKLVIKKTLAGS 389
+ +FI A ++ K + + K L G
Sbjct: 62 VN-----------------------GDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGE 98
Query: 390 DLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSL----KYGLPIL 445
++ P+ + + V+ I + GTG+V + P +D K L
Sbjct: 99 EILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAK 158
Query: 446 SPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTI 505
+ D+ E +++ G GN++ V DE ++ ++ K+
Sbjct: 159 YGIRDDMVLPFEP--VPVIEIPGFGNLSAVTICDE-----LKIQSQNDREKLAEAKEKIY 211
Query: 506 FRATEQWFASVEGFRQAAMDAI 527
+ + V+GF+ + +
Sbjct: 212 LKGFYEGIMLVDGFKGQKVQDV 233
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 116 bits (291), Expect = 4e-29
Identities = 39/253 (15%), Positives = 68/253 (26%), Gaps = 80/253 (31%)
Query: 300 DLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKK 359
+ L T P T+ V+ K+ Y V +
Sbjct: 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDA-----------------------GNGD 68
Query: 360 VFII---VASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITT 416
FI ++ T+ G L R P + V+ + +
Sbjct: 69 YFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLA 128
Query: 417 ESGTGLVHTAPGHGQEDYVTSL-------KYGL--------PI-LSPVDDEGKFT----- 455
GTG+V P +D+VT+ YG+ + + + G
Sbjct: 129 TKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLV 188
Query: 456 --------------EEA----------------GKFSGLDVLGDGNVAVVKYLDEQ-MSL 484
A GK+ G V D V + L ++ ++
Sbjct: 189 NDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVE-DAKPKVKQDLIDEGLAF 247
Query: 485 IMEEP-YEHKYPY 496
+ EP EH + +
Sbjct: 248 VYNEPELEHHHHH 260
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 108 bits (270), Expect = 7e-26
Identities = 33/248 (13%), Positives = 71/248 (28%), Gaps = 39/248 (15%)
Query: 249 WADWNNPYLTLDPEYEAAQ-YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLP------DL 301
+ E E + ++ + + P + ++ +
Sbjct: 21 YTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFYSNPKNKAIFDQLWENQVDNAKV 80
Query: 302 GLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVF 361
L T P T+ V +Y I ++ +V
Sbjct: 81 YLLAATLRPETMVGQTNCWVLPTGRYGAYYI-----------------------NKDEVI 117
Query: 362 II---VASDLV--PTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITT 416
I+ A ++ K +L ++GSDL P+ + V+ + I
Sbjct: 118 IVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLETIKM 177
Query: 417 ESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGK----FSGLDVLGDGNV 472
+ GTG+V + P +DY + G + +++ G +
Sbjct: 178 DKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTL 237
Query: 473 AVVKYLDE 480
+ V+ +E
Sbjct: 238 SAVRLCEE 245
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 89.9 bits (224), Expect = 1e-18
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 6/144 (4%)
Query: 397 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 456
P+ P+ + + + GTG + P H DY ++GL +S ++ EG+
Sbjct: 244 RIPLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEG 302
Query: 457 E--AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFA 514
E GLD + V+ E L+ EE Y R P + QW+
Sbjct: 303 ERVPEALRGLDRF-EARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWL 361
Query: 515 SVEGFRQAAMDAI--GQVKWVPPQ 536
+ + + + G + +VP +
Sbjct: 362 RMRPLAEEVLKGLRRGDIAFVPER 385
Score = 72.6 bits (179), Expect = 4e-13
Identities = 51/295 (17%), Positives = 105/295 (35%), Gaps = 49/295 (16%)
Query: 541 YGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYR----KLRGTLRYLLGNLHDWRVGNS 595
YGAD LR + + G D+ + + L R KL R++L + G
Sbjct: 546 YGADALRFALIYLATGGQDIRLDLRWLEM----ARNFANKLYNAARFVLLSR----EGFQ 597
Query: 596 ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL 655
D + D++ +L V+ I YE+ + + + + + ++Y + AK L
Sbjct: 598 AKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPAL 657
Query: 656 YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFE 715
G + L L +++++ P++P L +++Q L E +
Sbjct: 658 KAGNAHT------LRTLEEVLAVLLKLLHPMMPFLTSELYQALT---------GKEELAL 702
Query: 716 SKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDAS 775
WP + E F + + T V + + + + E +VYL + A
Sbjct: 703 EAWPEPGGR---DEEAERAF-EALKQAVTAVRAL----KAEAGLPPAQEVRVYLEGETAP 754
Query: 776 LASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLIRNIPYSGEYLVEGKDKV 830
+ + L+ +S+ ++LP P + + + +
Sbjct: 755 V-------------EENLEVFRFLSRADLLPERPAKALVKAMPRVTARMPLEGLL 796
Score = 70.7 bits (174), Expect = 1e-12
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
EP+ + W + FV+ PP G+LHMGHAL+ L+D + RYK ++
Sbjct: 13 EPKWAEKWAKNPFVANPKS--GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMR 70
Query: 187 NYKVRYVPGWDCH-GLPIELKVLQSLDED--AKKDLTPSKLRAKA----AKFAKATVKAQ 239
++ ++PG D H G+ ++ V + L ++ + DL K + + T+ Q
Sbjct: 71 GFEAVWLPGTD-HAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESG-GTILKQ 128
Query: 240 MASFKRYGVWADWNNPYLTLDPEYEAA 266
+ KR G ADW+ T+D + A
Sbjct: 129 L---KRLGASADWSREAFTMDEKRSRA 152
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.6 bits (164), Expect = 1e-11
Identities = 91/671 (13%), Positives = 195/671 (29%), Gaps = 194/671 (28%)
Query: 166 HMGHALNKILKDIINRYK-LLQNYKVRYVPGWDCHGLPIELK----------VLQSLDED 214
H H ++ + +YK +L ++ +V +DC + K ++ S D
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 215 AKKDLTPSKLRAKAAKFAKATVKAQMASFKRYG-VWADW----NNPYL-------TLDPE 262
+ L +K + + V+ + Y + + P + D
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 263 YEAAQ-YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAV---------WTTTPWT 312
Y Q + + +VSR + ++ A L E P + + W
Sbjct: 120 YNDNQVFAKYNVSR-LQPYLKLRQA-------LLELRPAKNVLIDGVLGSGKTWVA---- 167
Query: 313 VPANAAVAVNAKLQYAVVEIQSLLEGDSAAPAN-------KKSRPGNVLKDQKKVFIIVA 365
V ++ K+Q + P VL+ +K+ +
Sbjct: 168 ----LDVCLSYKVQ-------------CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 366 SDLVPTLEAKWGTKLVI-------KKTLAGSDLENC----------RYVHPVDNRQCPVV 408
+ + KL I ++ L ENC + + + C ++
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-SCKIL 269
Query: 409 IGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLG 468
+TT + D++++ L T + +L
Sbjct: 270 -----LTTRF-KQVT---------DFLSAATTTHISL--DHHSMTLTPDE----VKSLLL 308
Query: 469 DGNVAVVKYLD-------EQM--------SLIMEEPYEHKYPYD-WRT----KKPTIFRA 508
KYLD ++ S+I E + +D W+ K TI +
Sbjct: 309 -------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 509 TEQWFASVEGFRQAAMD-AIGQ--VKWVPPQEAPGYGADVL-RLWVSSVDYTGDVMIGPQ 564
+ E +R+ ++ +P +L +W + DVM+
Sbjct: 362 SLNVLEPAE-YRKMFDRLSVFPPSAH-IPTI--------LLSLIWFDVIKS--DVMVVVN 409
Query: 565 VLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLP-----MIDQYAL---FQLENIV 616
L + S + ++ + + + + + ++ ++D Y + F ++++
Sbjct: 410 KLHKYSLVEKQPKESTIS----IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 617 KNIRESYESYQFF----KIFQIIQRFIIVDLSNFYFDVA--KDRLYTGGTTSFTRRSCQT 670
+ Y Y K + +R + + D + ++ T S
Sbjct: 466 PPYLDQY-FYSHIGHHLKNIEHPERMTL--FRMVFLDFRFLEQKIRHDSTAWNASGS--- 519
Query: 671 VLSAHLLSIVRV----IAPILPH---LAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDE 723
+ L ++ I P L + LP E + SK+ L
Sbjct: 520 --ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP--------KIEENLICSKYTDLLR 569
Query: 724 KWRTFPVGEIY 734
I+
Sbjct: 570 IALMAEDEAIF 580
Score = 55.6 bits (133), Expect = 7e-08
Identities = 62/377 (16%), Positives = 106/377 (28%), Gaps = 146/377 (38%)
Query: 611 QLENIVKNIRESYESYQFFKIF-----QIIQRFIIVDLSNFY------------------ 647
++++I+ + + + F +++Q+F+ L Y
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 648 --FDVAKDRLYTGGTT----SFTRRSCQTVLSAHLLSIVRVIAPILPH---------LAE 692
+ +DRLY + +R L LL + R +L +A
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVAL 168
Query: 693 DV---------------W----------------QNL-----PFAYTLEDGSAA------ 710
DV W Q L P + D S+
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 711 -------EFVFESKWP----VLD-----EKWRTFPVGEIYFWGKILELRT---EVNKVLE 751
+ + VL + W F + KIL L T +V L
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-----CKIL-LTTRFKQVTDFLS 282
Query: 752 VARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAK---HDADTLQRIFIISQVEVLPST 808
A T + SL+ T D + K L R EVL +
Sbjct: 283 AATTTHI---SLDHHSMTLTPDEVK-----SLL-LKYLDCRPQDLPR-------EVLTTN 326
Query: 809 PN--GLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEH--PTLCSR 864
P +I E + +G + K C +T + S + P +
Sbjct: 327 PRRLSII------AESIRDGLA-------TWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 865 CYEVLAVQP----IPSM 877
++ L+V P IP++
Sbjct: 374 MFDRLSVFPPSAHIPTI 390
Score = 49.9 bits (118), Expect = 3e-06
Identities = 82/620 (13%), Positives = 172/620 (27%), Gaps = 195/620 (31%)
Query: 99 EKKEEGRYKHTVDLPKTTFGMRANALVREP------------EIHKLWDDHQVF------ 140
K+EE K ++ + + + + E + +L++D+QVF
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 141 -------LRVADKN--DGENFVLHDGPPYANGNLHMG----HAL-NKILKDIINRYKLLQ 186
LR A +N ++ G + + + + +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLID-G---------VLGSGKTWVALDVCLS--YKVQCKM 180
Query: 187 NYKVRYVPGW----DCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMAS 242
++K+ + W +C+ L++LQ L + T + K +++A+
Sbjct: 181 DFKI-F---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--- 233
Query: 243 FKRYGVWADWNNPYLTLDPEYEAAQYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLG 302
+R + N L L +V + N F +L
Sbjct: 234 LRRLLKSKPYENCLLVLL-----------NV---------------QNAKAWNAF--NLS 265
Query: 303 LAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFI 362
+ TT + + A ++ L P V K
Sbjct: 266 CKILLTTRFKQVTDFLSAATTT-HISLDHHSMTLT------------PDEVKSLLLKYLD 312
Query: 363 IVASDLVPTLEAKWGTKLVIKKTLAGSDLEN--CRYVHPVDN-RQCPVVIGGDYITTESG 419
DL P E + + + + + DN + + D +TT
Sbjct: 313 CRPQDL-P-REVLTTNPRRLS--IIAESIRDGLATW----DNWKH----VNCDKLTTIIE 360
Query: 420 TGLVHTAPGHGQEDYV------------TSLKYGLPIL---SPVDDEGKFTEEAGKFSGL 464
+ L P ++ + T L L ++ D + K+S +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---LSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 465 DVLGDGNVAVVKYLDEQMSL---IMEEPYEHK-----YP----YDWRTKKPT-----IF- 506
+ + + + L + E H+ Y +D P +
Sbjct: 418 E--KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 507 ------RATEQWFASVEGFRQAAMDAIGQVKWV--------PPQEAPGYGADVLRLWVSS 552
+ E + FR +D +++ A G + L
Sbjct: 476 HIGHHLKNIEH-PERMTLFRMVFLD----FRFLEQKIRHDSTAWNASGSILNTL------ 524
Query: 553 VDYTGDVMIGPQVLR----QMSDIYRKLRGTLRYLLGNLHDWRVG-NSISYDDLPMIDQY 607
Q L+ + D K + +L L ++ N I ++ +
Sbjct: 525 -----------QQLKFYKPYICDNDPKYERLVNAILDFLP--KIEENLICSKYTDLL-RI 570
Query: 608 ALFQLENIVKNIRESYESYQ 627
AL + + E+++ Q
Sbjct: 571 ALMAEDEAI--FEEAHKQVQ 588
Score = 49.5 bits (117), Expect = 5e-06
Identities = 48/367 (13%), Positives = 102/367 (27%), Gaps = 136/367 (37%)
Query: 4 ILKSFASNSSV-STPREATIA--MMQSSSYRVLSRRTCSSFRKKASVNLFDSRGSSSLKF 60
+F + + T R + + +++ + + +L
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---------- 307
Query: 61 LSFLNVTCYS----ICSGDEFCSSSKRRSRGPVMAAKKAAEGEKKEEGRYKHTVDLPK-- 114
L +L+ + + + S + A+ +G + +KH V+ K
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLS---------IIAESIRDGLATWD-NWKH-VNCDKLT 356
Query: 115 TTFGMRANALVREPEIHK----------------------LW-----DDHQVFL------ 141
T N L EP ++ +W D V +
Sbjct: 357 TIIESSLNVL--EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 142 RVADKNDGEN-FVLHD------GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194
+ +K E+ + LH + I++ Y + + +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALH---------RSIVDHYNIPKTF-----D 460
Query: 195 GWDCHGLPIELKV-------LQSLDEDAKKDLTP----------SKLRA-KAAKFAKATV 236
D ++ L++++ + L K+R A A ++
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 237 KAQMASFKRYGVWADWNNPYLTL-DPEYEAAQYPEGHVSRSIYAVFRMVSAPPSTSGLLN 295
+ K Y PY+ DP+YE R+V+A +
Sbjct: 521 LNTLQQLKFYK-------PYICDNDPKYE-----------------RLVNA-------IL 549
Query: 296 EFLPDLG 302
+FLP +
Sbjct: 550 DFLPKIE 556
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 64.5 bits (158), Expect = 9e-11
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 26/143 (18%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENF-VLHDGPPYANGNLHMGHALNKILKDIINRYKLL 185
E + + W++ VL PY +G+LHMGH N + D++ R++ +
Sbjct: 10 EAKWQRFWEEKGFMKAKDLPGGRGKQYVL-VMFPYPSGDLHMGHLKNYTMGDVLARFRRM 68
Query: 186 QNYKVRYVPGWDCHGLPIELKVLQSLDEDA--KKDLTPSKLRAKAAKFAK---ATVKAQM 240
Q Y+V + GWD GLP E+A K + P + K +
Sbjct: 69 QGYEVLHPMGWDAFGLPA---------ENAALKFGVHP-------KDWTYANIRQAKESL 112
Query: 241 ASFKRYGVWADWNNPYLTLDPEY 263
+ G+ DW+ T +PEY
Sbjct: 113 ---RLMGILYDWDREVTTCEPEY 132
Score = 49.9 bits (120), Expect = 3e-06
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 397 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI----LSPVDDEG 452
++P + P+ DY+ GTG + P H Q DY + K+GLPI P +
Sbjct: 312 LNPATGERIPIWTA-DYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLP 370
Query: 453 KFTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 481
+ E A G F G + +G V+ +L+E+
Sbjct: 371 EPLERAYEEPGIMVNSGPFDGTES-EEGKRKVIAWLEEK 408
Score = 43.7 bits (104), Expect = 2e-04
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 670 TVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKW 725
V + ++++ P PHLAE++W + +FE+ WP LDEK
Sbjct: 766 PVYRTAIRYYLQMLFPFAPHLAEELWHWFW----------PDSLFEAGWPELDEKA 811
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 63.4 bits (155), Expect = 2e-10
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENF-VLHDGPPYANGNLHMGHALNKILKDIINRYKLL 185
E ++ WD+ + F V + E + L PY +G LHMGH N + D+I RY+ +
Sbjct: 31 ESKVQLHWDEKRTF-EVTEDESKEKYYCL-SMLPYPSGRLHMGHVRNYTIGDVIARYQRM 88
Query: 186 QNYKVRYVPGWDCHGLPIE 204
V GWD GLP E
Sbjct: 89 LGKNVLQPIGWDAFGLPAE 107
Score = 51.8 bits (125), Expect = 1e-06
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 397 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI---LSPVD-DEG 452
VHP+ + PV +++ E GTG V PGH Q DY + KYGL I + D E
Sbjct: 330 VHPLTGEEIPVWAA-NFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEP 388
Query: 453 KFTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 481
+++A G+F+GLD A+ L
Sbjct: 389 DLSQQALTEKGVLFNSGEFNGLDH-EAAFNAIADKLTAM 426
Score = 44.9 bits (107), Expect = 1e-04
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 676 LLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKW 725
LL++VR++ P PH+ +WQ L + + WPV DEK
Sbjct: 774 LLAVVRMLNPFTPHICFTLWQEL---------KGEGDIDNAPWPVADEKA 814
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus,
translation, amino acid, structural genomics; 1.70A
{Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Length = 147
Score = 57.5 bits (140), Expect = 6e-10
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 395 RYVH--------PVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILS 446
RY H P+ P+ + + + GTG + P H DY ++GL +S
Sbjct: 43 RYRHLLGKRARIPLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVS 101
Query: 447 PVDDEGKFTEE--AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPY 490
++ EG+ E GLD + V+ E L+ EE Y
Sbjct: 102 VINLEGRMEGERVPEALRGLDRF-EARRKAVELFREAGHLVKEEDY 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 2e-09
Identities = 61/397 (15%), Positives = 109/397 (27%), Gaps = 150/397 (37%)
Query: 118 GMRANALVREPEIHKLWDDHQVFLRVADKNDGENF------VLHDGPPYANGNLHMGHAL 171
GM + +W+ AD + + + ++ + P N +H G
Sbjct: 1630 GMGMDLYKTSKAAQDVWNR-------ADNHFKDTYGFSILDIVINNPV--NLTIHFGGEK 1680
Query: 172 NKILKDIINRYKLLQNY-KVRYVPGWDCHGLPIELKVLQSLDEDAKKDLT---P-SKLRA 226
K ++ +NY + + D G K+ + ++E + T L
Sbjct: 1681 GK---------RIRENYSAMIFETIVD--GKLKTEKIFKEINEHSTS-YTFRSEKGLL-- 1726
Query: 227 KAAKFAKATVKAQMASF-KRYGVWADWNNPYLTLDPEYEAAQYPEGHVSRSI--YAVFRM 283
AT Q A + D + L A GH S+ Y
Sbjct: 1727 ------SATQFTQPALTLMEKAAFEDLKSKGLIPADATFA-----GH---SLGEY----- 1767
Query: 284 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAP 343
+A S + +++ + V V V L +
Sbjct: 1768 -AALASLADVMS--IES---LV-----------EVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 344 ANKKSRPGNVLK--DQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLE----NCRYV 397
A PG V Q+ + +V V K+T G +E N
Sbjct: 1811 AI---NPGRVAASFSQEALQYVVER--------------VGKRT--GWLVEIVNYNV--- 1848
Query: 398 HPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEE 457
+N+Q V GD L ++ V
Sbjct: 1849 ---ENQQ--YVAAGD--------------------------LRALDTVTNV--------- 1868
Query: 458 AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKY 494
L+ + + +++ L + +SL EE H +
Sbjct: 1869 ------LNFIKLQKIDIIE-LQKSLSL--EEVEGHLF 1896
Score = 58.5 bits (141), Expect = 9e-09
Identities = 99/609 (16%), Positives = 176/609 (28%), Gaps = 219/609 (35%)
Query: 104 GRYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANG 163
G +H + +P +F A L + F ++ + E F D P
Sbjct: 14 GSLEHVLLVPTASFF---IASQ-------LQEQ---FNKILPEPT-EGFAADD-EPTTPA 58
Query: 164 NLH---MGHALNKILKDIINRYK-----LLQNYKVRYVPGWDCHGLPIELKVLQSLDEDA 215
L +G+ + + + ++ L ++ Y+ G D H L L ++
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL------AAKLLQEN 112
Query: 216 KKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQYPEGHVSR 275
L +K K A+ K +N L + A EG+
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDK---------KSNSAL-----FRAVG--EGNA-- 154
Query: 276 SIYAVF-------------RMVSA--PP-------STSGLLNEFLPD---------LGLA 304
+ A+F R + ++ L+E + GL
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 305 V--WTTTPWTVPAN---AAVAVNAKL-------QYAVV---------EIQSLLEGDS--- 340
+ W P P ++ ++ L Y V E++S L+G +
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 341 ------AAPANKKSRP---GNVLKDQKKVFIIVA--------SDLVPT-----LEAKWGT 378
A A S +V K +F I + L P+ LE G
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 379 K---LVIKKTLAGSDLENCRYVHPVDNRQCP---------------VVIGGDYITTESGT 420
L I L ++ YV+ N P +V+ G +S
Sbjct: 335 PSPMLSISN-LTQEQVQ--DYVNKT-NSHLPAGKQVEISLVNGAKNLVVSG---PPQSLY 387
Query: 421 GLVHT-----APG--------HGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVL 467
GL T AP + S ++ LP+ SP F S
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LPVASP------F------HS----- 429
Query: 468 GDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAA---- 523
L LI ++ ++ ++ + + ++ T R +
Sbjct: 430 --------HLLVPASDLINKDLVKNNVSFNAKDIQIPVY-DTFDG----SDLRVLSGSIS 476
Query: 524 ---MDAI--GQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSD-IYRKLR 577
+D I VKW + + A + +D+ GP + +R
Sbjct: 477 ERIVDCIIRLPVKW---ETTTQFKA----THI--LDF------GPGGASGLGVLTHRNKD 521
Query: 578 GT-LRYLLG 585
GT +R ++
Sbjct: 522 GTGVRVIVA 530
Score = 44.3 bits (104), Expect = 2e-04
Identities = 71/492 (14%), Positives = 129/492 (26%), Gaps = 195/492 (39%)
Query: 509 TEQWF-ASV--EGFRQAAMDAIGQVKWVPPQEAPGYGAD-----VLRLWVSSVDYTGDVM 560
T +F AS E F + P+ G+ AD L + Y +
Sbjct: 24 TASFFIASQLQEQFNKIL-----------PEPTEGFAADDEPTTPAELVGKFLGYVSSL- 71
Query: 561 IGPQVLRQMSDIYRKLRGTLR-----YLLGN-LHDWRVGNSISYDDLPMIDQ-------- 606
+ P + Q + L L YL GN +H + +D ++
Sbjct: 72 VEPSKVGQFDQV---LNLCLTEFENCYLEGNDIHA-LAAKLLQENDTTLVKTKELIKNYI 127
Query: 607 -----------------------------YALF--Q--LENIVKNIRESYESYQ------ 627
A+F Q ++ + +R+ Y++Y
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 628 FFKIFQIIQRFI--IVDLSNFY---FDVAK---------DRLYTG---------GTTSFT 664
+ + I +D + ++ + D+ Y G
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 665 R--RSCQTV-------------LSAHLLSIV--RVIAPILPHLAEDVWQNLPFAYTLEDG 707
+ + + + H +V IA D W++ +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA------ETDSWESF---FVSVR- 297
Query: 708 SAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVN---------------KVLE- 751
A +F + + + +P ILE E N + ++
Sbjct: 298 KAITVLF---FIGV-RCYEAYPN--TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 752 -VARTGKLIGSSLEAKVYLF-TDDA-----------SLASRLREMCTAKHDADTLQ-RI- 796
V +T + + + ++ L L LR+ A D Q RI
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK-APSGLD--QSRIP 408
Query: 797 FIISQ------VEVLPSTPNGLIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWN--- 847
F S+ LP P+ LV D + + +N
Sbjct: 409 F--SERKLKFSNRFLPVA-------SPFHSHLLVPASDLI---NKDLVKNNVS--FNAKD 454
Query: 848 -----YSTQVGS 854
Y T GS
Sbjct: 455 IQIPVYDTFDGS 466
Score = 43.1 bits (101), Expect = 5e-04
Identities = 48/278 (17%), Positives = 80/278 (28%), Gaps = 109/278 (39%)
Query: 600 DLPMIDQYALFQLENIVKN----------------IRESYESYQF----------FKIFQ 633
D D Y F + +IV N IRE+Y + F KIF+
Sbjct: 1650 DNHFKDTYG-FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 634 IIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAED 693
I +++ F K L T FT Q L+ + L
Sbjct: 1709 EINE----HSTSYTFRSEKGLLS---ATQFT----QPALTLMEKAAFED-------LKS- 1749
Query: 694 VWQNLP----FA------YT-LEDGSAAE-FVFESKWPVLDEKWRTFPVGEIYFWGKILE 741
+P FA Y L S A+ ES ++ +++
Sbjct: 1750 -KGLIPADATFAGHSLGEYAAL--ASLADVMSIES---LV----------------EVVF 1787
Query: 742 LRTEVNKVLEVARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQ 801
R G + ++ ++ +A + A + LQ +
Sbjct: 1788 YR------------GMTMQVAVPRDELGRSNYGMIAINPGRVA-ASFSQEALQYV----- 1829
Query: 802 VEVLPSTPNGLIR----NIP---Y--SGEYLVEGKDKV 830
VE + L+ N+ Y +G+ + D V
Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQQYVAAGD--LRALDTV 1865
Score = 40.0 bits (93), Expect = 0.004
Identities = 71/416 (17%), Positives = 119/416 (28%), Gaps = 146/416 (35%)
Query: 8 FASNSSVSTPREATIAMMQSSSYRVLSRR---TCSSFRKK---ASVNL------------ 49
S +S P I ++Q + Y V ++ T R A+ +
Sbjct: 231 LLS-IPISCP---LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 50 -----FDSRGSSSLKFLSFLNVTC---YSICSGD-EFCSSSKRRSRG---PVMAAKKAAE 97
F ++ L F+ V C Y S S + G P M +
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-MLS---IS 342
Query: 98 GEKKEEGRYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDG 157
+E+ + + V+ + N+ P + ++ N +N V+ G
Sbjct: 343 NLTQEQVQ-DY-VN--------KTNS--HLPA-----GKQ---VEISLVNGAKNLVV-SG 381
Query: 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRY---VPGWDCHGLPIELKVLQSLDED 214
PP + L+ LN L+ L Q+ ++ + + LP+
Sbjct: 382 PPQS---LY---GLNLTLRKAKAPSGLDQS-RIPFSERKLKFSNRFLPV----------- 423
Query: 215 AKKDLTP--SKLRAKAAKFAKATVKAQMASFKRYGVWADWNNP-YLTLDPEYEAAQYPEG 271
+P S L A+ + SF D P Y T D G
Sbjct: 424 ----ASPFHSHLLVPASDLINKDLVKNNVSFNA----KDIQIPVYDTFD----------G 465
Query: 272 HVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTP--WTVPANAAVAVNAKLQYAV 329
R + SG ++E + D P W A
Sbjct: 466 SDLRVL-------------SGSISERIVDC----IIRLPVKWE----TTTQFKA------ 498
Query: 330 VEIQSLLE---GDSAAPANKKSRPGNVLKDQKK---VFIIVASDLVPTLEAKWGTK 379
+L+ G + S G + K V +IVA L + +G K
Sbjct: 499 ---THILDFGPGGA-------SGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 59.3 bits (144), Expect = 4e-09
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 159 PYANGNLHMGHALNKILK-DIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ 209
PYANG +H GH L DI RY L+ V ++ G D HG PI + L+
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Score = 42.8 bits (101), Expect = 6e-04
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 23/112 (20%)
Query: 597 SYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------V 650
+L +D+ AL ++E K + E +Y+F + + + N YFD
Sbjct: 421 ERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRV--MSLASFGNRYFDHKQPWKT 478
Query: 651 AKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNL 698
AK+ + T ++ L IV+ + P LP +E +W L
Sbjct: 479 AKE----------DKVRTGTTVN-ISLQIVKALGILLEPFLPDASEKIWHLL 519
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 58.4 bits (142), Expect = 6e-09
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELK 206
Y N H+GHA I D I RY L++Y V ++ G D HGL I+ K
Sbjct: 15 YVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKK 61
Score = 36.0 bits (84), Expect = 0.058
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 22/112 (19%)
Query: 605 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------VAKDRLYTG 658
D+ + +KN E F+K + I +F N Y D + K+R
Sbjct: 375 DEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT--SYLNKYVDEKQPWALNKER---- 428
Query: 659 GTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNLPFAYTLED 706
+ Q VL L+ + V+ PI P+ ++ Q L L++
Sbjct: 429 -----KKEELQKVL-YALVDGLFVLTHLLYPITPNKMKEALQMLGEKEFLKE 474
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 58.0 bits (141), Expect = 9e-09
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ 209
PYANG++H+GH L I D+ RY+ ++ ++V ++ D HG PI LK Q
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 77
Score = 41.4 bits (98), Expect = 0.001
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 604 IDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD-RLYTGGTTS 662
D + + I E++ES +F K + I + DL+N Y D +
Sbjct: 426 ADPQLYKTFTDAAEVIGEAWESREFGKAVREI--MALADLANRYVDEQAPWVVAK---QE 480
Query: 663 FTRRSCQTVLS-----AHLLSIVRVIAPILPHLAEDVWQNL 698
Q + S +L + P+LP L E L
Sbjct: 481 GRDADLQAICSMGINLFRVLMTY--LKPVLPKLTERAEAFL 519
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 57.6 bits (140), Expect = 1e-08
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELK 206
Y N H+GHA ++ D + R+ L Y+ ++ G D HG +
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRA 59
Score = 36.8 bits (86), Expect = 0.028
Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 29/121 (23%)
Query: 605 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------VAKD---RL 655
L + + +R +F + V N Y + + K
Sbjct: 377 AGEELAEGTGLAGRLRPLVRELKFHVALEEA--MAYVKALNRYINEKKPWELFKKEPEEA 434
Query: 656 YTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNLPFAYTLEDGSAAE 711
+ VL ++ +R+ + P +P ++ + L + A
Sbjct: 435 -------------RAVL-YRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAER 480
Query: 712 F 712
+
Sbjct: 481 W 481
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 57.7 bits (140), Expect = 1e-08
Identities = 21/47 (44%), Positives = 25/47 (53%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELK 206
Y NG H+GHA I D I R+K L Y VRY+ G D HG +
Sbjct: 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAET 68
Score = 37.2 bits (87), Expect = 0.023
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 27/155 (17%)
Query: 584 LGNL--------HDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQII 635
LGNL + D L + +++ +RE ++ + I
Sbjct: 366 LGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAI 425
Query: 636 QRFIIVDLSNFYFD------VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----P 685
+ +N YF + K + ++ +TVL L +VR+ + P
Sbjct: 426 WSVL--GAANRYFSAQEPWVLRKS------DAAEDQQRFRTVL-YTTLEVVRIASLLLQP 476
Query: 686 ILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPV 720
++P + L D SA + +
Sbjct: 477 VMPESTAKLLDLLGQPTDERDFSAIANRIKPGTSL 511
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 57.7 bits (140), Expect = 1e-08
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELK 206
Y NG H+GHA I D + R++ L V ++ G D HG+ +
Sbjct: 35 YPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQS 81
Score = 36.1 bits (84), Expect = 0.057
Identities = 24/136 (17%), Positives = 40/136 (29%), Gaps = 37/136 (27%)
Query: 584 LGNL--------HDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQII 635
LGNL G D+ L Q + ++ R++ + I
Sbjct: 377 LGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAI 436
Query: 636 QRFIIVDLSNFYFD------VAKD---RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA-- 684
+ +N YF + K R+ TVL ++R +
Sbjct: 437 FAVV--AEANRYFAGQEPWALRKTDPARM-------------GTVL-YVTAEVLRRVGIM 480
Query: 685 --PILPHLAEDVWQNL 698
P +P AE + L
Sbjct: 481 VQPFIPQSAEKLLDIL 496
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 56.5 bits (136), Expect = 2e-08
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIE 204
Y N H+GH + ++ D+I RY ++ +V + G D HG +
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVA 63
Score = 38.4 bits (89), Expect = 0.010
Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 41/185 (22%)
Query: 534 PPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNL------ 587
P ++A +G D L+ ++ + ++ +L G L LGNL
Sbjct: 334 PVEKAEEFGYDALKYFLLR-----ESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTS 388
Query: 588 -HDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNF 646
G S D+ + ++++ Y K + F ++ N
Sbjct: 389 AKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAV--FDVLRAINA 446
Query: 647 YFD------VAKD---RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAED 693
Y + K RL +TVL L VRV PILP +
Sbjct: 447 YVTDMAPWKLVKTDPERL-------------RTVL-YITLEGVRVTTLLLSPILPRKSVV 492
Query: 694 VWQNL 698
++ L
Sbjct: 493 IFDML 497
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 55.8 bits (135), Expect = 4e-08
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIE 204
Y N + H+GH + ++ D++ RY ++ +V + G D HG +
Sbjct: 36 YVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVA 80
Score = 36.1 bits (84), Expect = 0.057
Identities = 24/135 (17%), Positives = 40/135 (29%), Gaps = 36/135 (26%)
Query: 584 LGNL-------HDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQ 636
LGNL G + D+ + L N+ + Y I
Sbjct: 395 LGNLVSRCVAPKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAI- 453
Query: 637 RFIIVDLSNFYFD------VAKD---RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA--- 684
F ++ N Y + K RL TVL + +R+
Sbjct: 454 -FDVLRSLNAYVTENAPWKLVKMDTARL-------------GTVL-YVTMEGLRICTMFL 498
Query: 685 -PILPHLAEDVWQNL 698
P++P A+++ L
Sbjct: 499 QPVMPQKAKEIMDAL 513
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia
coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 51.3 bits (124), Expect = 2e-07
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 397 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI---LSPVD-DEG 452
VHP+ + PV +++ E GTG V PGH Q DY + KYGL I + D E
Sbjct: 93 VHPLTGEEIPVWAA-NFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEP 151
Query: 453 KFTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 481
+++A G+F+GLD A+ L
Sbjct: 152 DLSQQALTEKGVLFNSGEFNGLDH-EAAFNAIADKLTAM 189
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 50.4 bits (121), Expect = 5e-07
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 16/98 (16%)
Query: 397 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPV---DDEGK 453
+P + + PV +Y+ E GTG + P H Q D+ + KY LPI V +
Sbjct: 114 TNPANGEKIPVWSA-NYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIK-VVVKPEGAWD 171
Query: 454 FTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 481
F + A F GLD + ++L ++
Sbjct: 172 FEKGAYEGKGTLVNSDGFDGLDS-ETAKRKITEWLQDR 208
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 33.4 bits (77), Expect = 0.32
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 166 HMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GHA + D+++R L + V+YV
Sbjct: 54 HLGHAATYLTFDLVHRLWLDAGHTVQYV 81
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.3 bits (73), Expect = 0.47
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 7/31 (22%)
Query: 705 EDGSAAEFVFESKWPVLDEK-------WRTF 728
E S + V VL +K WRTF
Sbjct: 36 ERFSEGDVVCALCGLVLSDKLVDTRSEWRTF 66
Score = 29.6 bits (66), Expect = 3.6
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 841 KCERCWNYSTQVGSFVEHP----TLCSRCYEVLAVQPI 874
C C Y ++ VE +C+ C VL+ + +
Sbjct: 23 TCPECKVYPPKI---VERFSEGDVVCALCGLVLSDKLV 57
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.51
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 233 KATVKAQMASFKRYGVWADWNNPYLTLDPEYE 264
K +K AS K Y AD + P L + E
Sbjct: 19 KQALKKLQASLKLY---ADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 1.4
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 14/33 (42%)
Query: 294 LNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQ 326
L + D + P A+A+ A ++
Sbjct: 29 LKLYADD-------SAP-------ALAIKATME 47
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain,
receptor, PAS domain, chromophore, sensory transduction;
HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Length = 520
Score = 32.7 bits (74), Expect = 0.63
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 185 LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRA 226
+ N +R +P D +G+ + L + + DLT S LR+
Sbjct: 217 IHN-PIRVIP--DVYGVAVPLTPAVNPSTNRAVDLTESILRS 255
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 32.6 bits (75), Expect = 0.64
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 166 HMGHALNKILKDIINRYKLLQNYKVRYV 193
H+G+ I D++ + YKV Y
Sbjct: 57 HIGNFRTYIFGDLLIKTLRFLGYKVNYA 84
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor,
fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus
radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A*
2o9b_A* 1ztu_A*
Length = 343
Score = 30.7 bits (69), Expect = 2.0
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 185 LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRA 226
++ +R D + L + + +A L + LRA
Sbjct: 231 TRH-LLRLTA--DTRAAAVPLDPVLNPQTNAPTPLGGAVLRA 269
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 30.6 bits (70), Expect = 2.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 166 HMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GH + I+ D++ RY ++ Y+V +V
Sbjct: 40 HIGHGRSWIIFDMVVRYLRMRGYEVTFV 67
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.6
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 13/60 (21%)
Query: 83 RRSRGPVMAAKKAAEGEKKEEGR----------YKHTVD-LPKTTFGMRAN--ALVREPE 129
R + + AA ++E R + + + K R A ++P+
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 30.2 bits (69), Expect = 2.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 166 HMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GH + D++ RY YK++YV
Sbjct: 37 HIGHGRTFVAFDVVARYLRFLGYKLKYV 64
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 28.7 bits (64), Expect = 5.0
Identities = 7/63 (11%), Positives = 14/63 (22%), Gaps = 1/63 (1%)
Query: 480 EQMSLIMEEPYEHKYPY-DWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEA 538
+ ++H Y T T + F E + +W+
Sbjct: 76 PITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDAL 135
Query: 539 PGY 541
Sbjct: 136 LAS 138
>2ftr_A BH0200; structural genomics, joint center for structural genomics,
J protein structure initiative, PSI-2, unknown function;
HET: MSE; 1.40A {Bacillus halodurans} SCOP: d.58.4.15
Length = 108
Score = 27.8 bits (62), Expect = 6.1
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 477 YLDEQMSLIMEEP----YEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 529
Y + L + P + + + E ++ E +QA G+
Sbjct: 28 YFNTHAPLTRKIPGLRDMKVTRIVGSPMGESKFYLMCEMYYDDHESLQQAMRTDEGK 84
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein
structure initi midwest center for structural genomics,
PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP:
d.159.1.8
Length = 195
Score = 28.1 bits (62), Expect = 9.8
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 553 VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISY 598
+ + GD + I++ L G ++GN HD + Y
Sbjct: 47 LYHLGDFTWHFNDKNEYLRIWKALPGRKILVMGN-HDKDKESLKEY 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,753,632
Number of extensions: 856480
Number of successful extensions: 1799
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1733
Number of HSP's successfully gapped: 76
Length of query: 881
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 779
Effective length of database: 3,853,851
Effective search space: 3002149929
Effective search space used: 3002149929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)