RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002784
(881 letters)
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 273
Score = 183 bits (465), Expect = 6e-53
Identities = 101/299 (33%), Positives = 151/299 (50%), Gaps = 30/299 (10%)
Query: 573 YRKLRGTLRYLLGNLHDWRVG-NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKI 631
YRK+R TLR++LGN++D+ +SI +L +D+Y L +L + +YE++ + I
Sbjct: 1 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNI 60
Query: 632 FQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLA 691
+Q +Q FI V+LSNFY D KD LY S RRS QTVL L+ + +++APIL H A
Sbjct: 61 YQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTA 120
Query: 692 EDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLE 751
E+VW + P A L +KWR + LR +VN+ LE
Sbjct: 121 EEVWSHTPHVKEESVHLADMPKVVEVDQALLDKWR-----------TFMNLRDDVNRALE 169
Query: 752 VARTGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNG 811
AR K+IG SLEAKV + ++D AS A H + ++ ++ +++ +
Sbjct: 170 TARNEKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQAT---- 225
Query: 812 LIRNIPYSGEYLVEGKDKVWIGVSRAEGSKCERCWNYSTQVGSFVEHPTLCSRCYEVLA 870
+ I + A+G KCERCWNYS +G+ E LC RC +V+
Sbjct: 226 --------------AYEHGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVK 270
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 158 bits (401), Expect = 2e-42
Identities = 82/164 (50%), Positives = 109/164 (66%), Gaps = 3/164 (1%)
Query: 106 YKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGN 164
Y+ T+ +PKT F MR +EP+I + WD + + +KN G E F+LHDGPPYANGN
Sbjct: 3 YEKTLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGN 62
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKL 224
LHMGHALNKILKD I RYK +Q + YVPGWD HGLPIE + + + +K ++ ++
Sbjct: 63 LHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVD--RKKMSTAEF 120
Query: 225 RAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQY 268
R K +FA ++ Q F+R GV D+N+PY+TL PEYEAAQ
Sbjct: 121 REKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQI 164
Score = 41.5 bits (96), Expect = 4e-04
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 541 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSD 571
GAD+ RLWVSS DY DV I ++L+Q SD
Sbjct: 419 KGADIARLWVSSTDYLADVRISDEILKQTSD 449
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 150 bits (378), Expect = 2e-39
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Query: 120 RANALVREPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGNLHMGHALNKILKDI 178
N E E+ W ++F + + G + +++GPP ANG H+GHA + KD+
Sbjct: 7 EPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDL 66
Query: 179 INRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTP---SKLRAKAAKFAKAT 235
RYK ++ Y GWD HGLP+EL+V + L +K+++ + +
Sbjct: 67 FPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTY 126
Query: 236 VKAQMASFKRYGVWADWNNPYLTLDPEYEAAQY 268
K A +R W D + Y TL+P Y + +
Sbjct: 127 EKEWEAFTERIAYWVDLEDAYATLEPTYIESIW 159
Score = 40.7 bits (94), Expect = 7e-04
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 477 YLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPP 535
Y + + YP+ WR P ++ ATE WF F+ + ++ WVPP
Sbjct: 180 YCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPP 238
Score = 33.8 bits (76), Expect = 0.092
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 541 YGADVLRLWV-SSVDYTGDVMIGPQVLRQM 569
+GAD LR ++ S D GP ++R+
Sbjct: 420 FGADALRWYIYVSAPPEADRRFGPNLVRET 449
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 141 bits (355), Expect = 4e-36
Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 14/142 (9%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E + + W++ + PY +G+LHMGH N + D++ R++ +Q
Sbjct: 10 EAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQ 69
Query: 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRY 246
Y+V + GWD GLP E L K + A ++ S +
Sbjct: 70 GYEVLHPMGWDAFGLPAENAAL--------------KFGVHPKDWTYANIRQAKESLRLM 115
Query: 247 GVWADWNNPYLTLDPEYEAAQY 268
G+ DW+ T +PEY
Sbjct: 116 GILYDWDREVTTCEPEYYRWNQ 137
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 136 bits (343), Expect = 6e-35
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 12/179 (6%)
Query: 111 DLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHA 170
DLPK + EP+ + W + K+ FV+ PP G+LHMGHA
Sbjct: 2 DLPK-----AYDPKSVEPKWAEKWAKNPFV--ANPKSGKPPFVIFMPPPNVTGSLHMGHA 54
Query: 171 LNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAK--KDLTPSKLRAKA 228
L+ L+D + RYK ++ ++ ++PG D G+ ++ V + L ++ K DL K +
Sbjct: 55 LDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERV 114
Query: 229 AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ---YPEGHVSRSIYAVFRMV 284
++ + + + KR G ADW+ T+D + A + + Y R+V
Sbjct: 115 WQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLV 173
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 194
Score = 112 bits (279), Expect = 9e-29
Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 31/223 (13%)
Query: 272 HVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVE 331
S SIY F + D +WTTTPWT+P+N A+ V+ +L+Y
Sbjct: 3 KRSASIYVAFNVKDDK-------GVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYN 55
Query: 332 IQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDL 391
+ +K + SD V + ++K G +L
Sbjct: 56 VN----------------------GEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKEL 93
Query: 392 ENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDE 451
E HP +R+ V+ G D++TT++GTG VHTAPGHG++DY+ +Y LP++SP+DD+
Sbjct: 94 EWVVAQHPFLDRESLVING-DHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDK 152
Query: 452 GKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKY 494
G FTEE G+F G+ N AV L E+ +L+ + H Y
Sbjct: 153 GVFTEEGGQFEGMFY-DKANKAVTDLLTEKGALLKLDFITHSY 194
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 95.4 bits (236), Expect = 1e-21
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQS 210
++ PYANG++H+GH L I D+ RY+ ++ ++V ++ D HG PI LK
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA--- 59
Query: 211 LDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEY 263
+ +TP + + F + + ++N + T E
Sbjct: 60 ----QQLGITP-------EQMIGEMSQEHQTDFAGFNI--SYDNYHSTHSEEN 99
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
thermophilus [TaxId: 274]}
Length = 179
Score = 86.6 bits (213), Expect = 4e-20
Identities = 62/215 (28%), Positives = 83/215 (38%), Gaps = 40/215 (18%)
Query: 276 SIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSL 335
S+Y F + L L +WTTTPWT+P N A AV+ + YA ++
Sbjct: 2 SVYVRFPLKEPK-------KLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQV--- 51
Query: 336 LEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCR 395
G + KT G LE
Sbjct: 52 -------------------------GDEALILEEGLGRKLLGEGTPVLKTFPGKALEGLP 86
Query: 396 YVHPVDNRQCP--VVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGK 453
Y P V+ DY++ E GTG+VH AP G ED T+ YGLP+L VD+EGK
Sbjct: 87 YTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGK 146
Query: 454 FTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEE 488
E F GL + N A+++ L + L EE
Sbjct: 147 LLVE--PFKGLYFR-EANRAILRDLRGRGFLFKEE 178
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 88.5 bits (218), Expect = 2e-19
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 10/135 (7%)
Query: 152 FVLHDGPPYANGNLHMGHALNK-ILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQS 210
+++ PYANG +H GH + DI RY L+ V ++ G D HG PI +
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRA--- 60
Query: 211 LDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQYPE 270
K+ +P ++ + + K T + SF +G + L E+ Y
Sbjct: 61 ----LKEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYK--LSQEFFLKAYEN 114
Query: 271 GHVSRSIYAVFRMVS 285
GH+ + +
Sbjct: 115 GHLVKKVTKQAYCEH 129
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 87.0 bits (214), Expect = 7e-19
Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 9/135 (6%)
Query: 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ 209
+ F + Y N H+GHA ++ D + R+ L Y+ ++ G D HG +
Sbjct: 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAA-- 60
Query: 210 SLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQYP 269
P + + K ++ + + + Y
Sbjct: 61 -----QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDF--IRTTEERHKKVVQLVLKKVYE 113
Query: 270 EGHVSRSIYAVFRMV 284
G + Y V
Sbjct: 114 AGDIYYGEYEGLYCV 128
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 63.4 bits (153), Expect = 6e-12
Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 41/196 (20%)
Query: 300 DLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKK 359
++ + V+TT P T+ + + + + +K+
Sbjct: 15 EVRIPVFTTRPDTLFGATFLVLAPEHPLTLELA----------------------APEKR 52
Query: 360 VFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESG 419
++ + +K ++P + P+ DY+ G
Sbjct: 53 EEVLAYVEAAKRKTEIERQAEGREK---TGVFLGAYALNPATGERIPIWT-ADYVLFGYG 108
Query: 420 TGLVHTAPGHGQEDYVTSLKYGLPILSPVD--------------DEGKFTEEAGKFSGLD 465
TG + P H Q DY + K+GLPI ++ +E +G F G +
Sbjct: 109 TGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTE 168
Query: 466 VLGDGNVAVVKYLDEQ 481
+G V+ +L+E+
Sbjct: 169 SE-EGKRKVIAWLEEK 183
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 52.8 bits (125), Expect = 7e-08
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 134 WDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYV 193
W D+ + ++ + E +V+ G +G +H+G+ I+ + Y+VR++
Sbjct: 2 WADYIADKIIRERGEKEKYVVESGI-TPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHI 60
Query: 194 PGWDCHG 200
WD +
Sbjct: 61 HMWDDYD 67
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 143
Score = 47.9 bits (113), Expect = 4e-07
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 7/133 (5%)
Query: 361 FIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIG-GDYITTESG 419
FI +A+ T+ + + + + + + I + + G
Sbjct: 15 FIEIATVRPETV---FADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFG 71
Query: 420 TGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEA--GKFSGLDVLGDGNVAVVKY 477
TG + P H DY ++GL +S ++ EG+ E GLD + V+
Sbjct: 72 TGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRF-EARRKAVEL 130
Query: 478 LDEQMSLIMEEPY 490
E L+ EE Y
Sbjct: 131 FREAGHLVKEEDY 143
Score = 31.0 bits (69), Expect = 0.25
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 303 LAVWTTTPWTVPANAAVAVNAKLQY 327
+ + T P TV A+ A+AV+ + +
Sbjct: 16 IEIATVRPETVFADQAIAVHPEDER 40
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 218
Score = 49.3 bits (116), Expect = 5e-07
Identities = 35/239 (14%), Positives = 81/239 (33%), Gaps = 40/239 (16%)
Query: 575 KLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQI 634
KL R++L + + D + D++ +L V+ I YE+ + +
Sbjct: 3 KLYNAARFVLLSREGF----QAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAARE 58
Query: 635 IQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDV 694
+ + + ++Y + AK L G + +++++ P++P L ++
Sbjct: 59 VYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEEVLA------VLLKLLHPMMPFLTSEL 112
Query: 695 WQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEVAR 754
+Q L L + P G + E + + +
Sbjct: 113 YQALTG-----------------KEELALEAWPEPGGRDEEAERAFEALKQAVTAVRALK 155
Query: 755 TGKLIGSSLEAKVYLFTDDASLASRLREMCTAKHDADTLQRIFIISQVEVLPSTPNGLI 813
+ + E +VYL + A + + L+ +S+ ++LP P +
Sbjct: 156 AEAGLPPAQEVRVYLEGETAPV-------------EENLEVFRFLSRADLLPERPAKAL 201
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 128
Score = 42.6 bits (99), Expect = 2e-05
Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 27/131 (20%)
Query: 594 NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD 653
+ L D+ +L +K + E E+ +F + F+
Sbjct: 21 GVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTP 80
Query: 654 RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFV 713
V + ++++ P PHLAE++W + +
Sbjct: 81 -----------------VYRTAIRYYLQMLFPFAPHLAEELWHWF----------WPDSL 113
Query: 714 FESKWPVLDEK 724
FE+ WP LDEK
Sbjct: 114 FEAGWPELDEK 124
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 41.5 bits (96), Expect = 3e-04
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPI 203
H+GH + D++ RY YK++YV I
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKI 74
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 32.9 bits (74), Expect = 0.062
Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 3/95 (3%)
Query: 604 IDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSF 663
+ L + + +R +F + ++ N Y + K
Sbjct: 28 VAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKA--LNRYINEKKPWELFKKEPEE 85
Query: 664 TRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 698
R V+ L ++ P +P ++ + L
Sbjct: 86 ARAVLYRVVEG-LRIASILLTPAMPDKMAELRRAL 119
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal
domain {Enterococcus faecalis [TaxId: 1351]}
Length = 202
Score = 30.9 bits (69), Expect = 0.44
Identities = 13/116 (11%), Positives = 39/116 (33%), Gaps = 6/116 (5%)
Query: 473 AVVKYLDEQMSLIMEEPY-EHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVK 531
+V++ E+ +++ + E + + + P + T + A + A D +V
Sbjct: 86 SVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVH 145
Query: 532 WVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVL-----RQMSDIYRKLRGTLRY 582
W + + ++D +G L + + ++ + +
Sbjct: 146 WFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEIIIKAFNRVVDKMEH 201
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 322
Score = 29.4 bits (66), Expect = 1.8
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 580 LRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYE----SYQFFKIFQII 635
Y + L VG I ++L + L + S+ YQ + +++
Sbjct: 36 EGYSIYRLAYENVGIVIDPENLIIATTKELEYEGEFIPEGEISFSELRNDYQSKLVLRLL 95
Query: 636 QR--FIIVDLS----NFYFDVAKDRL 655
+ +LS F
Sbjct: 96 KENGIGEYELSKLLRKFRKPKTFGDY 121
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 28.7 bits (63), Expect = 3.0
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 162 NGNLHMGHALNKILKDIINRYKLLQNYKV 190
H GH + I+ + ++V
Sbjct: 20 AKPFHAGHLRSTIIGGFLANLYEKLGWEV 48
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 28.4 bits (62), Expect = 3.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 162 NGNLHMGHALNKILKDIINRYKLLQNYKV 190
N LH+GH N L D I R +V
Sbjct: 19 NKELHVGHLRNIALGDAIARILAYAGREV 47
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis
[TaxId: 476]}
Length = 256
Score = 27.7 bits (60), Expect = 6.4
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 637 RFIIVDLSNFYFDVAKDRL 655
FI D++ Y + A L
Sbjct: 236 NFIGCDMNAEYVNQANFVL 254
>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Caenorhabditis elegans [TaxId: 6239]}
Length = 137
Score = 26.8 bits (58), Expect = 7.5
Identities = 6/64 (9%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 478 LDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFA--SVEGFRQAAMDAIGQVKWVPP 535
E+ ++ E+ H+ ++ + + +++ KW
Sbjct: 52 TKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCEL 111
Query: 536 QEAP 539
++A
Sbjct: 112 EDAI 115
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 194
Score = 26.8 bits (59), Expect = 9.3
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 709 AAEFVFESKWPVLDEKWRTFPVGEIYFWGKILELRTEVNKVLEV 752
E V S PV+D Y +LE +V+E
Sbjct: 24 TVEEVLSSLGPVVDAH-------PEYEEVALLERMVIPERVIEF 60
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 158
Score = 26.7 bits (58), Expect = 9.9
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 490 YEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAP 539
Y ++P D ++ A + A D I + +V ++
Sbjct: 82 YLGRFP-DGVLILRHVWLAEP---EPGQTLAPAFTDEIAEASFVSREDFA 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0485 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,355,694
Number of extensions: 163503
Number of successful extensions: 424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 34
Length of query: 881
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 788
Effective length of database: 1,130,706
Effective search space: 890996328
Effective search space used: 890996328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)