Query 002785
Match_columns 881
No_of_seqs 421 out of 2851
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:04:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452 RNA-binding translatio 100.0 1E-273 2E-278 2218.7 49.1 868 4-877 6-892 (892)
2 PLN00070 aconitate hydratase 100.0 3E-263 7E-268 2288.5 75.1 874 4-878 42-935 (936)
3 PTZ00092 aconitate hydratase-l 100.0 6E-261 1E-265 2267.4 74.9 868 5-878 14-897 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 2E-258 4E-263 2242.3 71.6 849 22-877 2-876 (876)
5 PRK12881 acnA aconitate hydrat 100.0 5E-257 1E-261 2236.7 73.6 860 4-878 3-889 (889)
6 PRK09277 aconitate hydratase; 100.0 1E-256 2E-261 2229.2 75.9 861 1-878 1-887 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 3E-252 7E-257 2181.3 70.9 818 22-878 12-858 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 1E-248 2E-253 2125.7 63.9 834 11-878 6-861 (861)
9 TIGR01340 aconitase_mito aconi 100.0 4E-176 8E-181 1542.4 57.4 684 60-872 19-745 (745)
10 PRK07229 aconitate hydratase; 100.0 1E-163 3E-168 1429.4 54.4 634 60-877 2-645 (646)
11 TIGR01342 acon_putative aconit 100.0 1E-161 3E-166 1409.5 52.9 638 62-877 1-653 (658)
12 TIGR00139 h_aconitase homoacon 100.0 2E-144 4E-149 1263.7 49.2 642 61-876 2-712 (712)
13 PRK11413 putative hydratase; P 100.0 5E-141 1E-145 1239.7 51.7 678 60-874 34-750 (751)
14 KOG0453 Aconitase/homoaconitas 100.0 5E-134 1E-138 1120.6 44.5 692 60-874 58-774 (778)
15 cd01586 AcnA_IRP Aconitase A c 100.0 3E-130 6E-135 1080.7 36.8 400 86-551 1-404 (404)
16 PRK12466 isopropylmalate isome 100.0 4E-119 9E-124 1018.1 39.6 439 60-552 3-462 (471)
17 TIGR00170 leuC 3-isopropylmala 100.0 5E-119 1E-123 1015.6 40.0 439 60-552 2-460 (465)
18 PRK05478 isopropylmalate isome 100.0 5E-118 1E-122 1009.2 39.5 439 60-552 2-460 (466)
19 PF00330 Aconitase: Aconitase 100.0 2E-119 5E-124 1022.9 28.1 442 62-549 1-465 (465)
20 cd01584 AcnA_Mitochondrial Aco 100.0 5E-117 1E-121 985.3 35.4 397 86-551 1-412 (412)
21 cd01583 IPMI 3-isopropylmalate 100.0 5E-115 1E-119 962.9 36.9 377 86-551 1-382 (382)
22 TIGR01343 hacA_fam homoaconita 100.0 1E-114 3E-119 965.1 39.2 402 62-552 1-409 (412)
23 PRK00402 3-isopropylmalate deh 100.0 6E-114 1E-118 961.8 39.9 404 60-552 2-412 (418)
24 TIGR02086 IPMI_arch 3-isopropy 100.0 6E-114 1E-118 960.4 38.2 402 61-552 1-408 (412)
25 cd01585 AcnA_Bact Aconitase ca 100.0 1E-113 3E-118 949.5 36.5 375 85-551 1-380 (380)
26 TIGR02083 LEU2 3-isopropylmala 100.0 5E-113 1E-117 952.4 40.0 406 61-552 1-414 (419)
27 COG0065 LeuC 3-isopropylmalate 100.0 6E-110 1E-114 902.4 37.1 405 61-552 3-417 (423)
28 cd01582 Homoaconitase Homoacon 100.0 2E-104 4E-109 869.9 35.3 361 86-551 1-363 (363)
29 cd01581 AcnB Aconitate hydrata 100.0 2E-103 5E-108 878.3 35.7 388 63-551 1-436 (436)
30 cd01351 Aconitase Aconitase ca 100.0 4.5E-99 1E-103 842.0 34.6 377 86-551 1-389 (389)
31 PRK09238 bifunctional aconitat 100.0 2E-95 4E-100 854.9 38.6 395 58-552 368-810 (835)
32 TIGR00117 acnB aconitate hydra 100.0 4.1E-94 9E-99 841.2 40.4 393 59-552 370-810 (844)
33 PLN00094 aconitate hydratase 2 100.0 8E-92 1.7E-96 819.4 37.4 394 59-552 442-884 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 1.5E-65 3.3E-70 503.8 12.3 170 655-824 1-170 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 4.2E-47 9.2E-52 424.0 22.9 402 60-586 372-822 (852)
36 KOG0454 3-isopropylmalate dehy 100.0 4.7E-44 1E-48 389.2 16.4 389 334-827 26-421 (502)
37 COG0066 LeuD 3-isopropylmalate 100.0 2.2E-38 4.8E-43 317.3 9.3 170 647-877 7-180 (191)
38 cd01578 AcnA_Mitochon_Swivel M 100.0 3E-38 6.6E-43 307.1 8.6 141 655-824 1-141 (149)
39 PRK00439 leuD 3-isopropylmalat 100.0 2.3E-36 5E-41 301.8 11.1 156 653-876 4-159 (163)
40 PRK14023 homoaconitate hydrata 100.0 2.7E-36 5.8E-41 301.7 10.7 157 653-878 4-160 (166)
41 TIGR02087 LEUD_arch 3-isopropy 100.0 3.6E-36 7.7E-41 297.5 10.5 152 653-875 3-154 (154)
42 TIGR02084 leud 3-isopropylmala 100.0 5.7E-36 1.2E-40 296.4 9.7 154 653-874 3-156 (156)
43 PLN00072 3-isopropylmalate iso 100.0 1.8E-34 4E-39 301.3 11.1 167 646-875 68-240 (246)
44 TIGR00171 leuD 3-isopropylmala 100.0 2.4E-34 5.2E-39 292.2 6.8 166 647-866 7-174 (188)
45 PRK01641 leuD isopropylmalate 100.0 1.3E-33 2.7E-38 289.7 6.7 163 647-866 7-172 (200)
46 PF00694 Aconitase_C: Aconitas 100.0 3.7E-34 7.9E-39 275.6 1.5 128 679-806 3-130 (131)
47 cd01579 AcnA_Bact_Swivel Bacte 100.0 1.5E-32 3.3E-37 261.7 5.2 121 655-825 1-121 (121)
48 cd01577 IPMI_Swivel Aconatase- 100.0 1.3E-29 2.8E-34 229.7 4.7 73 752-825 19-91 (91)
49 cd00404 Aconitase_swivel Aconi 99.9 2.9E-28 6.4E-33 219.5 5.8 71 752-824 17-87 (88)
50 PRK09238 bifunctional aconitat 99.9 6.1E-27 1.3E-31 277.3 12.2 164 646-877 165-342 (835)
51 cd01674 Homoaconitase_Swivel H 99.9 1.7E-27 3.6E-32 226.4 4.1 100 656-806 2-101 (129)
52 KOG0454 3-isopropylmalate dehy 99.9 1.1E-25 2.4E-30 246.2 5.5 417 60-550 66-498 (502)
53 cd01576 AcnB_Swivel Aconitase 99.9 2.1E-25 4.6E-30 214.4 4.8 67 752-824 52-130 (131)
54 TIGR00117 acnB aconitate hydra 99.9 1.3E-23 2.8E-28 248.6 11.3 165 645-877 165-343 (844)
55 PRK14812 hypothetical protein; 99.8 4.3E-20 9.4E-25 175.5 6.9 91 762-866 2-92 (119)
56 PLN00094 aconitate hydratase 2 99.8 1.3E-18 2.7E-23 206.3 12.8 118 741-877 284-415 (938)
57 PF06434 Aconitase_2_N: Aconit 98.3 1.2E-06 2.6E-11 89.5 6.4 117 740-877 44-175 (204)
58 PF04412 DUF521: Protein of un 95.5 0.036 7.9E-07 63.8 8.1 68 413-488 289-356 (400)
59 COG1049 AcnB Aconitase B [Ener 95.2 0.037 8.1E-07 65.3 6.8 116 743-875 215-342 (852)
60 COG1679 Predicted aconitase [G 92.5 0.31 6.7E-06 55.3 7.3 68 413-488 289-356 (403)
61 cd01355 AcnX Putative Aconitas 87.6 1.2 2.5E-05 51.5 6.7 69 414-493 279-347 (389)
62 PF00694 Aconitase_C: Aconitas 53.2 6 0.00013 39.3 0.9 29 651-691 10-38 (131)
63 TIGR00829 FRU PTS system, fruc 30.5 42 0.00092 30.7 2.6 31 418-449 2-32 (85)
64 PF07972 Flavodoxin_NdrI: NrdI 30.1 44 0.00095 32.8 2.8 42 481-523 41-85 (122)
65 COG1445 FrwB Phosphotransferas 27.7 71 0.0015 31.5 3.7 33 416-449 4-36 (122)
66 PRK03600 nrdI ribonucleotide r 26.6 58 0.0013 32.3 3.0 28 496-523 56-86 (134)
67 COG1833 Uri superfamily endonu 20.0 1.8E+02 0.0039 29.1 4.9 27 469-495 79-105 (132)
No 1
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-273 Score=2218.69 Aligned_cols=868 Identities=73% Similarity=1.210 Sum_probs=851.1
Q ss_pred CCCccccccceecCCCCceeEEEeCCCCCCCCCCCCChhhHHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeEeec
Q 002785 4 ENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFK 83 (881)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~LP~s~rvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei~~~ 83 (881)
.+||....++|+..++ .|+||||++|. .++++||||||||||+++||||++.+.++++|+||.|+....+..||+|+
T Consensus 6 ~~~f~~~~~~l~~~~~--~~kyf~l~~l~-~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~~t~~k~vEvpFk 82 (892)
T KOG0452|consen 6 ENPFAQLIETLPKPGG--VYKYFDLPKLN-SRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWKNTQKKQVEVPFK 82 (892)
T ss_pred cccHHHHHhccCCCCC--cceeeeccccc-cccccCchhHHHHHHHHHhcCccceeeHHHHHHHhCccccCccceeeccc
Confidence 4789887788887754 79999999997 68999999999999999999999999999999999999877778899999
Q ss_pred cceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhh
Q 002785 84 PARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKW 163 (881)
Q Consensus 84 pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~ 163 (881)
|+||++|||||+||+||||+|||+++++|+||+||||.+|+|||||||+|+|+.++++|+++|+..||+||+|||.||||
T Consensus 83 PARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlKW 162 (892)
T KOG0452|consen 83 PARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLKW 162 (892)
T ss_pred cceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeCCCCceeccccccccceeeecCCCccccCeeeecCCCCcccCcccceeeccCHHHHHHHHcCCcEEeec
Q 002785 164 GSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (881)
Q Consensus 164 ~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~v 243 (881)
+.++|+|+.++|||+||+||||||||||||+.+++++|||++|||||||||++|||++||||||+|+|++|+|||+.|.+
T Consensus 163 gs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmvl 242 (892)
T KOG0452|consen 163 GSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVL 242 (892)
T ss_pred hhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchheec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeeeccChhhHHH
Q 002785 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (881)
Q Consensus 244 Pevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~Y 323 (881)
|+|||.+|+|+|.++||++||+|+|+++||+.|++||||||||+|+++||++||+||+||+||||||.||||+|+.|+.|
T Consensus 243 P~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~y 322 (892)
T KOG0452|consen 243 PEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQY 322 (892)
T ss_pred ccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCC-------------------CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcccccC
Q 002785 324 LKLTGRSDDT-------------------PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 384 (881)
Q Consensus 324 L~~~gr~~~~-------------------~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~ 384 (881)
|+.|||+++. ++.++.|++++++||++|+|+|+||+||+|+++|++++++|.+||.+++++
T Consensus 323 l~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgF 402 (892)
T KOG0452|consen 323 LKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGF 402 (892)
T ss_pred HHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCcccc
Confidence 9999999865 567899999999999999999999999999999999999999999999999
Q ss_pred CCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHH
Q 002785 385 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVT 464 (881)
Q Consensus 385 ~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~ 464 (881)
|||.++++.+.+.+.+.++|++++|.||+|+||+|+||||+|||++|++|+||||||+++|++|+||+|||++|||.+|+
T Consensus 403 KgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt 482 (892)
T KOG0452|consen 403 KGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVT 482 (892)
T ss_pred cccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhh
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHH
Q 002785 465 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 544 (881)
Q Consensus 465 ~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA 544 (881)
.||.++|++++|+++||.|+||||+|||||||+|.+++.++|.+|++++++|+|||||||||+||.+++||||||++|+|
T Consensus 483 ~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvva 562 (892)
T KOG0452|consen 483 KYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVA 562 (892)
T ss_pred hhhhhccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCC
Q 002785 545 YALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPK 624 (881)
Q Consensus 545 ~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~ 624 (881)
|||+|+++|||++||||+++||+.|||+||||+++||+++++++|.|+||++.|+.|..+++.|++|++|++.+|+||++
T Consensus 563 YaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~~ 642 (892)
T KOG0452|consen 563 YAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPK 642 (892)
T ss_pred hhhcceeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCcCCCCCCCCCcccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhh
Q 002785 625 STYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIM 704 (881)
Q Consensus 625 styi~~pp~f~~~~~~~~~~~~i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm 704 (881)
||||++||||++|+.+++.+++|++|+||+.+||+||||||||||+|.++|||+|||.+||++|+|||||||||||++||
T Consensus 643 STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~vM 722 (892)
T KOG0452|consen 643 STYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVM 722 (892)
T ss_pred CceecCCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEec
Q 002785 705 ARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAK 784 (881)
Q Consensus 705 ~rg~F~n~r~~n~l~~g~~g~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~ 784 (881)
.||||+|+|+.|+++. +.||.|+|+|+||.+.|||+|++|+++|.|+||+||+.||||||||||||++.++|||||||+
T Consensus 723 aRGTFANIrlvNkl~~-k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAViae 801 (892)
T KOG0452|consen 723 ARGTFANIRLVNKLLS-KVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIAE 801 (892)
T ss_pred hcccchhhHHHHHHhc-ccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHHH
Confidence 9999999999999985 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhcccCccceeecCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHH
Q 002785 785 SFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFD 864 (881)
Q Consensus 785 SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~ 864 (881)
||+||||+||++|||+||+|..++++++|+|+|.|.++|.+++. .++||+.|+|+.++|+.|.+++||||+.|+.|++
T Consensus 802 S~ErIHrsnLvGmGIiPl~f~~Ge~AdtLgLtG~E~yti~lP~~--~lkPgq~i~v~~dtGk~F~~~~rFdteVeltyy~ 879 (892)
T KOG0452|consen 802 SYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLPEN--ILKPGQDITVTTDTGKVFVCTLRFDTEVELTYYK 879 (892)
T ss_pred HHHHHHhhccccceeeeeeecCCCChhhcCcccceeEEEECCcc--cCCCCceEEEEecCCcEEEEEEEecceEEEEEEe
Confidence 99999999999999999999999999999999999999999985 3999999999988899999999999999999999
Q ss_pred hcCHHHHHHHHHh
Q 002785 865 HGGILQYVIRNLI 877 (881)
Q Consensus 865 aGGiL~yv~~~~~ 877 (881)
+||||||+.|++.
T Consensus 880 ~GGiL~y~iRk~~ 892 (892)
T KOG0452|consen 880 NGGILNYMIRKLS 892 (892)
T ss_pred cCCcHHHHHhhcC
Confidence 9999999999873
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=3.4e-263 Score=2288.53 Aligned_cols=874 Identities=91% Similarity=1.431 Sum_probs=834.5
Q ss_pred CCCccccccceecC-CCCceeEEEeCCCCCCCCCCCCChhhHHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeEee
Q 002785 4 ENPFKSILKTLQRP-DGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPF 82 (881)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~y~~l~~~~~~~~~~LP~s~rvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei~~ 82 (881)
.|||....++|+++ ++ ..|+||+|.++...+++||||||||||||+||||||..++++++++|++|......+.||+|
T Consensus 42 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~lP~s~rillE~~lR~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f 120 (936)
T PLN00070 42 ENPFKGILTSLPKPGGG-EFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVEIPF 120 (936)
T ss_pred cCchhhhhheeeecCCC-ceEEEEEhhhcccCChhhCCcHHHHHHHHHhhhcCCccCCHHHHHHHHhccccCCCCceecc
Confidence 47886543778877 43 33999999998656799999999999999999999999999999999999876666679999
Q ss_pred ccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhh
Q 002785 83 KPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLK 162 (881)
Q Consensus 83 ~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~ 162 (881)
+|+||+||||||+|+++|||||||+++++|+||++|||.+||+||||||||+|++++++|+.+|+.+||+||.|||.|||
T Consensus 121 ~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~flk 200 (936)
T PLN00070 121 KPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLK 200 (936)
T ss_pred CCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccceeCCCCceeccccccccceeeecCCCccccCeeeecCCCCcccCcccceeeccCHHHHHHHHcCCcEEee
Q 002785 163 WGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 242 (881)
Q Consensus 163 ~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~ 242 (881)
|++++|+||+|+|||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|+|++|+|||+||+
T Consensus 201 w~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~~~ 280 (936)
T PLN00070 201 WGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 280 (936)
T ss_pred hhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEEee
Confidence 99999999999999999999999999999999768999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeeeccChhhHH
Q 002785 243 LPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQ 322 (881)
Q Consensus 243 vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~ 322 (881)
+||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|||||+||||+|++|++
T Consensus 281 vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T~~ 360 (936)
T PLN00070 281 LPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQ 360 (936)
T ss_pred CCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCC-------------------CCCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhccccc
Q 002785 323 YLKLTGRSDD-------------------TPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVG 383 (881)
Q Consensus 323 YL~~~gr~~~-------------------~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~ 383 (881)
||+.|||+++ .+|++|.|+++++||||+|||+||||++|||++||++++++|.+++..+++
T Consensus 361 YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~ 440 (936)
T PLN00070 361 YLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVG 440 (936)
T ss_pred HHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhccccc
Confidence 9999999864 257899999999999999999999999999999999999999988876555
Q ss_pred CCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHH
Q 002785 384 FKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVV 463 (881)
Q Consensus 384 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V 463 (881)
.+|+..+.++.....+++++|++.++++|+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~V 520 (936)
T PLN00070 441 FKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVV 520 (936)
T ss_pred ccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHH
Confidence 44443332322333556789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHH
Q 002785 464 TKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 543 (881)
Q Consensus 464 ~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~Va 543 (881)
++||+++||+++|+++||+|++||||+|||||++++++++++|.+|+++++||||+||||+|||||.+++||||||++||
T Consensus 521 ~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~lVa 600 (936)
T PLN00070 521 TKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 600 (936)
T ss_pred HHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCC
Q 002785 544 AYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 623 (881)
Q Consensus 544 A~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~ 623 (881)
||||+|+|+||+++||+|+++||++|||+||||+.+||++++.+.++|++|.+.|.+++.+++.|++|++|++.+|+||+
T Consensus 601 A~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~wd~ 680 (936)
T PLN00070 601 AYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSWDP 680 (936)
T ss_pred HHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCcCCCCCCCCCcccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhh
Q 002785 624 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEI 703 (881)
Q Consensus 624 ~styi~~pp~f~~~~~~~~~~~~i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~ev 703 (881)
+||||++||||++++..++++.+|++||||+++||+||||||||||+|+++||||+||+++|+.++||||||||||||||
T Consensus 681 ~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~ev 760 (936)
T PLN00070 681 KSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEI 760 (936)
T ss_pred CcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcchh
Confidence 99999999999999988888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEe
Q 002785 704 MARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIA 783 (881)
Q Consensus 704 m~rg~F~n~r~~n~l~~g~~g~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA 783 (881)
|+||||+|+|++|+|++|.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++||||||||
T Consensus 761 m~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaVIA 840 (936)
T PLN00070 761 MARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIA 840 (936)
T ss_pred hhceeccchhhhhhhcCCCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHhhhcccCccceeecCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHH
Q 002785 784 KSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYF 863 (881)
Q Consensus 784 ~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~ 863 (881)
+||+||||+||+|||||||+|.++++++++++.+++.++|+++..+.+++||+.+++...+|++|.++++++|+.|++||
T Consensus 841 ~SF~rIhrsNli~~GiLPL~f~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r~dt~~E~~~~ 920 (936)
T PLN00070 841 KSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYF 920 (936)
T ss_pred ccHHHHHHhhhhhcCcceEEeCCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeCCCeEEEEEEeCCCHHHHHHH
Confidence 99999999999999999999999999999999888999999877666789999888877788999999999999999999
Q ss_pred HhcCHHHHHHHHHhh
Q 002785 864 DHGGILQYVIRNLIN 878 (881)
Q Consensus 864 ~aGGiL~yv~~~~~~ 878 (881)
++|||||||+|++++
T Consensus 921 ~~GGiL~~v~r~~~~ 935 (936)
T PLN00070 921 DHGGILPYVIRNLIK 935 (936)
T ss_pred HcCCHHHHHHHHHhh
Confidence 999999999999875
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=5.6e-261 Score=2267.40 Aligned_cols=868 Identities=71% Similarity=1.174 Sum_probs=827.4
Q ss_pred CCccccccceecCCCCceeEEEeCCCCCCCCCCCCChhhHHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeEeecc
Q 002785 5 NPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKP 84 (881)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~LP~s~rvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei~~~p 84 (881)
|+|....++|+ ++ +.|+||+|+++...+++||||||||||||+||||||..++++++++|++|......+.||+|+|
T Consensus 14 ~~~~~~~~~l~-~~--~~~~~~~l~~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~~~p 90 (898)
T PTZ00092 14 NPFEKVLKTLK-DG--GSYKYYSLNELHDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEENSKKQIEIPFKP 90 (898)
T ss_pred CchhhhhccCC-CC--CeEEEEEhhhcccCChhhCCchHHHHHHHHhhcCCCcCCCHHHHHHHHcCcccCCCCceeeecc
Confidence 67765336777 54 4899999999865679999999999999999999999999999999999987666678999999
Q ss_pred ceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhc
Q 002785 85 ARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWG 164 (881)
Q Consensus 85 drvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~ 164 (881)
|||+|||+||+|+++|||||||+++++|+||.+|||.+||+|+|||+||+++++..+++..|+.+||+||.|||.||+|+
T Consensus 91 ~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~rN~ery~fl~~~ 170 (898)
T PTZ00092 91 ARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKWG 170 (898)
T ss_pred ceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHHhhHHHhChHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeCCCCceeccccccccceeeecCCCccccCeeeecCCCCcccCcccceeeccCHHHHHHHHcCCcEEeecC
Q 002785 165 SNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (881)
Q Consensus 165 ~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vP 244 (881)
+++|+||+|+|||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++|
T Consensus 171 ~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaeaamlgq~~~~~vP 250 (898)
T PTZ00092 171 SKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLP 250 (898)
T ss_pred hhhhcCCcccCCCCceeceechhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHHHHhcCcEEeeCC
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeeeccChhhHHHh
Q 002785 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (881)
Q Consensus 245 evv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~YL 324 (881)
|||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||
T Consensus 251 evvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~gifp~De~T~~YL 330 (898)
T PTZ00092 251 EVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYL 330 (898)
T ss_pred CEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCC----------------CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcccccCCCcc
Q 002785 325 KLTGRSDDT----------------PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFA 388 (881)
Q Consensus 325 ~~~gr~~~~----------------~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~ 388 (881)
+.|||++++ +|++|.|+++++||||+|||+||||++|||++||+|++++|.+++....+.++++
T Consensus 331 ~~tgR~~~~~~lve~y~ka~~l~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~~~~~ 410 (898)
T PTZ00092 331 KQTGRSEEKVELIEKYLKANGLFRTYAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFKGFG 410 (898)
T ss_pred HhcccchHHHHHHHHHHHHHHHhhcCCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCCHHHhhhhhhhhhccC
Confidence 999998542 5889999999999999999999999999999999999999988776543444444
Q ss_pred CccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHH
Q 002785 389 IPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQ 468 (881)
Q Consensus 389 ~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~ 468 (881)
+++.+..+.+++.++|+++.|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+
T Consensus 411 ~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~v~PGS~~V~~~l~ 490 (898)
T PTZ00092 411 IPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVTKYLE 490 (898)
T ss_pred CCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHH
Confidence 43322222234446788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHc
Q 002785 469 NSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALA 548 (881)
Q Consensus 469 ~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~Ala 548 (881)
++||+++|+++||+|++||||+|||||++++++++++|.+|++++++|||+||||+|||||..++||||||+|||||||+
T Consensus 491 ~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~Ala 570 (898)
T PTZ00092 491 ASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALA 570 (898)
T ss_pred HcCcHHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCceEEcCHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccc
Q 002785 549 GSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYI 628 (881)
Q Consensus 549 G~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~styi 628 (881)
|+|+||+++||||+++||++|||+||||+.+||++++..+++|++|.+.|.+++.+++.|++|+++++++|+||++||||
T Consensus 571 G~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~StyI 650 (898)
T PTZ00092 571 GRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKSTYI 650 (898)
T ss_pred CceecccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccCCCCCccccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcCCCCCCCCCcccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhcccc
Q 002785 629 HEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGT 708 (881)
Q Consensus 629 ~~pp~f~~~~~~~~~~~~i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~ 708 (881)
++||||++++.+++++.+|.+||+|+++||+||||||||||+|+++||||+||+++|+.++|||||||||||||||+|||
T Consensus 651 ~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~~vm~Rgt 730 (898)
T PTZ00092 651 HNPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDEVMVRGT 730 (898)
T ss_pred cCCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCchhhccee
Confidence 99999999998888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhH
Q 002785 709 FANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFER 788 (881)
Q Consensus 709 F~n~r~~n~l~~g~~g~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~r 788 (881)
|+|+|++|+|+ |.+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++||||||||+||+|
T Consensus 731 F~Niri~N~l~-g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~~~lGvraVIA~SF~r 809 (898)
T PTZ00092 731 FANIRLINKLC-GKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAESFER 809 (898)
T ss_pred ccccceeeeec-cCCCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEecHHH
Confidence 99999999999 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCccceeecCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCH
Q 002785 789 IHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGI 868 (881)
Q Consensus 789 If~~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGi 868 (881)
|||+||+|||||||+|.+++++++++++++++++|++... .++||++++++..+|++|.++++++|+.|++||++|||
T Consensus 810 Ih~~Nli~~GvlPL~f~~~~~~~~l~~~~~~~i~i~~~~~--~l~p~~~v~v~~~~G~~~~~~~r~dt~~e~~y~~~GGi 887 (898)
T PTZ00092 810 IHRSNLVGMGILPLQFLNGENADSLGLTGKEQFSIDLNSG--ELKPGQDVTVKTDTGKTFDTILRIDTEVEVEYFKHGGI 887 (898)
T ss_pred HHHhhhhhcCcceeecCCcccHHHhcCCCCeEEEEecccc--ccCCCCeEEEEeCCCcEEEEEEeCCCHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999987322 57999999887778899999999999999999999999
Q ss_pred HHHHHHHHhh
Q 002785 869 LQYVIRNLIN 878 (881)
Q Consensus 869 L~yv~~~~~~ 878 (881)
||||+|++++
T Consensus 888 L~yv~~~~~~ 897 (898)
T PTZ00092 888 LQYVLRKLVK 897 (898)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=1.7e-258 Score=2242.34 Aligned_cols=849 Identities=65% Similarity=1.058 Sum_probs=808.8
Q ss_pred eeEEEeCCCCC--CCCCCCCChhhHHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeEeeccceeeeccCCcHhHHH
Q 002785 22 FGKYYSLPALN--DPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVV 99 (881)
Q Consensus 22 ~~~y~~l~~~~--~~~~~~LP~s~rvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~tg~~a~~ 99 (881)
.|+||+|.+|. ..+++||||||||||||+||||||..++++++++|++|......+.||+|+||||+||||||+|+++
T Consensus 2 ~~~~~~l~~l~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f~p~RvllQD~TGvpa~v 81 (876)
T TIGR01341 2 TYYYYSLKALEESGGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVADTEIAFKPARVVMQDFTGVPAVV 81 (876)
T ss_pred ceEEEehHHhhcccCChhhCCcHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcccCCCCceeccCchhheeccccCchHHH
Confidence 69999999885 3479999999999999999999999999999999999986666667999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCc
Q 002785 100 DLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSG 179 (881)
Q Consensus 100 dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~G 179 (881)
|||||||+++++|+||.+|||.+||+|+||||||++.++..+++..|+.+||+||+|||+||||++++|.||+|+|||+|
T Consensus 82 dlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~G 161 (876)
T TIGR01341 82 DLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTG 161 (876)
T ss_pred HHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccceeeecCC----CccccCeeeecCCCCcccCcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEccc
Q 002785 180 IVHQVNLEYLGRVVFNTN----GMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKL 255 (881)
Q Consensus 180 I~Hqv~lE~la~~v~~~~----G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L 255 (881)
||||||+||||+||+.++ |++|||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|
T Consensus 162 I~HqV~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L 241 (876)
T TIGR01341 162 IIHQVNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKL 241 (876)
T ss_pred eeceechhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeec
Confidence 999999999999999653 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeeeccChhhHHHhhhcCCCCCC--
Q 002785 256 RDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDT-- 333 (881)
Q Consensus 256 ~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~-- 333 (881)
++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||++++
T Consensus 242 ~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~ 321 (876)
T TIGR01341 242 QEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVE 321 (876)
T ss_pred CCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998621
Q ss_pred -------------CC-CCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcccccCCCccCccccccccce
Q 002785 334 -------------PQ-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAE 399 (881)
Q Consensus 334 -------------~d-~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 399 (881)
+| ++|.|+++++||||+|||+||||++|||++||+|++++|.+++..+.+.+|+.+... ...
T Consensus 322 l~~~y~k~~~l~~~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~----~~~ 397 (876)
T TIGR01341 322 LVEKYARAQGLFYDDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE----PLK 397 (876)
T ss_pred HHHHHHHhcccccCCCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh----hhh
Confidence 46 799999999999999999999999999999999999998887754433333322111 111
Q ss_pred eccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhc
Q 002785 400 FNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHL 479 (881)
Q Consensus 400 ~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~a 479 (881)
..++|++..|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++
T Consensus 398 ~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~a 477 (876)
T TIGR01341 398 KKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYLEEL 477 (876)
T ss_pred eeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHHHHc
Confidence 22468888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCcccccCCCCC
Q 002785 480 GFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEP 559 (881)
Q Consensus 480 G~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~p 559 (881)
||+|++|||++||||||+++++++++|.+++++++||||+||||+|||||..++||||||+|||||||+|+|+||+++||
T Consensus 478 Gf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dp 557 (876)
T TIGR01341 478 GFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINLYTEP 557 (876)
T ss_pred CCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCCcCCC
Q 002785 560 VGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTM 639 (881)
Q Consensus 560 lg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~ 639 (881)
+|.+++|++|||+||||+.+||++++.+.++++||.+.|.+++.+++.|++|++|+++.|+||++||||++||||++++.
T Consensus 558 lg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~ 637 (876)
T TIGR01341 558 IGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFEEMKQ 637 (876)
T ss_pred cccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhc
Q 002785 640 SPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLL 719 (881)
Q Consensus 640 ~~~~~~~i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~ 719 (881)
+++++.+|.+||||+++|||||||||||||+|+++||||+||+++|++++|||||||||||||||+||||+|+|++|+|+
T Consensus 638 ~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~N~l~ 717 (876)
T TIGR01341 638 DPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKNLMV 717 (876)
T ss_pred CCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhhhhcc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCcc
Q 002785 720 NGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 799 (881)
Q Consensus 720 ~g~~g~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gi 799 (881)
+|.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||+|++++|||+||||+||+||||+||+||||
T Consensus 718 ~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N~~~~Gi 797 (876)
T TIGR01341 718 KGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFERIHRSNLVGMGV 797 (876)
T ss_pred cCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEc--CCC--EEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 002785 800 IPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVT--DSG--KSFTCVIRFDTEVELAYFDHGGILQYVIRN 875 (881)
Q Consensus 800 lpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~~--~~G--~~f~~~~~~~t~~e~~~~~aGGiL~yv~~~ 875 (881)
|||+|++++++++|+++++|+|+|.... +++||++++++. .+| ++|.+.+++||+.|++||++|||||||+|+
T Consensus 798 lpl~~~~~~~~~~l~l~g~e~~~i~~~~---~l~pg~~v~v~~~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yv~r~ 874 (876)
T TIGR01341 798 IPLQFPQGEDAETLGLTGDETIDIDGIK---DLKPGKEVTVTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQYVLRK 874 (876)
T ss_pred ceEecCCCCCHHHhCCCCCCeEEEcCcc---ccCCCCEEEEEEEcCCCCEEEEEEEEecCCHHHHHHHHcCCHHHHHHHh
Confidence 9999999999999999999999985322 578999888763 577 789999999999999999999999999999
Q ss_pred Hh
Q 002785 876 LI 877 (881)
Q Consensus 876 ~~ 877 (881)
++
T Consensus 875 ~~ 876 (876)
T TIGR01341 875 FL 876 (876)
T ss_pred hC
Confidence 74
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=4.5e-257 Score=2236.74 Aligned_cols=860 Identities=59% Similarity=0.985 Sum_probs=814.5
Q ss_pred CCCccccccceecCCCCceeEEEeCCCCCC---CCCCCCChhhHHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeE
Q 002785 4 ENPFKSILKTLQRPDGGEFGKYYSLPALND---PRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEI 80 (881)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~---~~~~~LP~s~rvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei 80 (881)
.|+|.. +++|+++++ .|+||+|.++.. .+++||||||||||||+||||||..|+++++++|++|......+.||
T Consensus 3 ~~~~~~-~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~lP~s~rvllE~~lr~~d~~~v~~~~~~~~~~w~~~~~~~~ei 79 (889)
T PRK12881 3 HNLHKT-LKEFDVGGK--TYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALANWLPERKSDDEI 79 (889)
T ss_pred CCcccc-ccceeeCCe--eEEEEEhHHhhccccCChhhCCchHHHHHHHHhhcCCCCCCCHHHHHHHHhchhcCCCCcee
Confidence 377764 467887754 899999998853 37999999999999999999999999999999999998766666799
Q ss_pred eeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhh
Q 002785 81 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAF 160 (881)
Q Consensus 81 ~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~f 160 (881)
+|+||||+|||+||+|+++|||||||+++++|+||.++||.+||+++||||||++.++..+++.+|+.+||+||.|||.|
T Consensus 80 ~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~f 159 (889)
T PRK12881 80 PFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQF 159 (889)
T ss_pred ccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccceeCCCCceeccccccccceeeecC----CCccccCeeeecCCCCcccCcccceeeccCHHHHHHHHcC
Q 002785 161 LKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----NGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLG 236 (881)
Q Consensus 161 l~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~----~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g 236 (881)
|||++++|+||+++|||+|||||||+||||+||+.+ +|+++||++|||||||||+||||+|||||||+|++++|+|
T Consensus 160 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlg 239 (889)
T PRK12881 160 LKWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLG 239 (889)
T ss_pred HHHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhC
Confidence 999999999999999999999999999999999965 3799999999999999999999999999999999999999
Q ss_pred CcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeeecc
Q 002785 237 QPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPV 316 (881)
Q Consensus 237 ~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~ 316 (881)
||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|||||+||||+
T Consensus 240 q~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~ 319 (889)
T PRK12881 240 QPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPV 319 (889)
T ss_pred CcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhhhcCCCCCC----------------CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcc
Q 002785 317 DHVTLQYLKLTGRSDDT----------------PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDN 380 (881)
Q Consensus 317 De~T~~YL~~~gr~~~~----------------~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~ 380 (881)
|++|++||+.|||++++ +|++|.|+++++||||+|||+||||++|||++||+|++++|.+++..
T Consensus 320 De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~~~~ 399 (889)
T PRK12881 320 DEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGDPKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSK 399 (889)
T ss_pred ChhHHHHHHhcccchHHHHHHHHHHHHHHhhcCcCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHHhhh
Confidence 99999999999998751 68899999999999999999999999999999999999998877643
Q ss_pred cccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCc
Q 002785 381 RVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGS 460 (881)
Q Consensus 381 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS 460 (881)
....+++... .-.+....+.||+|+||||||||||||||+|+||++|||||++||+||+||||++|+|||
T Consensus 400 ~~~~~~~~~~----------~~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS 469 (889)
T PRK12881 400 PVAENGFAKK----------AQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGS 469 (889)
T ss_pred HHHhhhhhcc----------cccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeCCC
Confidence 2222221110 002345578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHH
Q 002785 461 GVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPP 540 (881)
Q Consensus 461 ~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~ 540 (881)
++|++||+++||+++|+++||+|++|||++||||||+++++++++|++||+++++|||+||||+||||+..++||||||+
T Consensus 470 ~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~ 549 (889)
T PRK12881 470 KVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLASPP 549 (889)
T ss_pred HHHHHHHHHcCcHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEECCHH
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHcCcccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccc
Q 002785 541 LVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYA 620 (881)
Q Consensus 541 ~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~ 620 (881)
|||||||+|+|+||+++||||+++||++|||+||||+.+||++++++.+++++|.+.|++++.+++.|++|+++.+++|+
T Consensus 550 lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~ 629 (889)
T PRK12881 550 LVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGPLYD 629 (889)
T ss_pred HHHHHHhcCceecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCCeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCCcCCCCCCCCCcccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCc
Q 002785 621 WDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGN 700 (881)
Q Consensus 621 w~~~styi~~pp~f~~~~~~~~~~~~i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN 700 (881)
||++||||++||||+++..+++++++|.+||||+++||+||||||||||+|+++||||+||+++|+.++|||||||||||
T Consensus 630 wd~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~rRgN 709 (889)
T PRK12881 630 WDPKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGN 709 (889)
T ss_pred cCCCCCcccCCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccc
Confidence 99999999999999999888888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeE
Q 002785 701 DEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKA 780 (881)
Q Consensus 701 ~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~a 780 (881)
||||+||||+|+|++|+|++|.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++|||+|
T Consensus 710 ~evm~rgtF~nir~~N~l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lGv~a 789 (889)
T PRK12881 710 HEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLGVKA 789 (889)
T ss_pred hHHhhhhccccCcccceeccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhHHHhhhcccCccceeecCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEE--cCCC--EEEEEEecCCC
Q 002785 781 VIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIRFDT 856 (881)
Q Consensus 781 VIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~--~~~G--~~f~~~~~~~t 856 (881)
|||+||+||||+||+|||||||+|+++.++++|+++++++++|+.... .++||+++++. ..+| .+|.+.++++|
T Consensus 790 VIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~d~i~I~~~~~--~i~p~~~v~v~~~~~~G~~~~~~~~~r~dt 867 (889)
T PRK12881 790 VIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFDIEGLPG--EIKPRQDVTLVIHRADGSTERVPVLCRIDT 867 (889)
T ss_pred EEEecHHHHHHhhhhhcCcceEEeCCccchhhcCcCCCCEEEEeCCcc--ccCCCCeEEEEEEeCCCCEEEEEEEeccCC
Confidence 999999999999999999999999999999999999999999985542 57899988864 3566 67888999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHhh
Q 002785 857 EVELAYFDHGGILQYVIRNLIN 878 (881)
Q Consensus 857 ~~e~~~~~aGGiL~yv~~~~~~ 878 (881)
+.|++||++||||+|+++++++
T Consensus 868 ~~e~e~~~aGGiL~yv~~~~~~ 889 (889)
T PRK12881 868 PIEVDYYKAGGILPYVLRQLLA 889 (889)
T ss_pred HHHHHHHHcCCHHHHHHHHhhC
Confidence 9999999999999999999863
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=1.1e-256 Score=2229.20 Aligned_cols=861 Identities=61% Similarity=1.038 Sum_probs=819.1
Q ss_pred CCCCCCccccccceecCCCCceeEEEeCCCCCC---CCCCCCChhhHHHHhhhccccCcccccHHHHHHHHhhhcCCCCc
Q 002785 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALND---PRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQ 77 (881)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~---~~~~~LP~s~rvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~ 77 (881)
|...++|.. +++|+.+++ .|+||+|.+|+. .+++||||||||||||+|||||+..++++++++|++|......+
T Consensus 1 ~~~~~~~~~-~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~lP~sirillE~~lr~~d~~~~~~~~v~~~~~w~~~~~~~ 77 (888)
T PRK09277 1 MSSTDSFKA-RKTLEVGGK--SYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKPD 77 (888)
T ss_pred CCCCCcccc-cceeeeCCe--eEEEEEhHHhhhcccCChhhCCcHHHHHHHHHhhcCCCccCCHHHHHHHHhchhcCCCC
Confidence 455678864 567887754 799999988743 47999999999999999999999999999999999998766667
Q ss_pred eeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhh
Q 002785 78 VEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKER 157 (881)
Q Consensus 78 ~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~er 157 (881)
.||+|+||||+|||+||+|+++|||||||+++++|+||++|||.+||+||+||+||+++++..+++..|+.+||+||.||
T Consensus 78 ~ei~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er 157 (888)
T PRK09277 78 REIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEER 157 (888)
T ss_pred ceeeeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccccceeCCCCceeccccccccceeeecC-CC--ccccCeeeecCCCCcccCcccceeeccCHHHHHHHH
Q 002785 158 FAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT-NG--MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAM 234 (881)
Q Consensus 158 y~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~-~G--~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m 234 (881)
|.||||++++|+|++|+|||+|||||||+||||+||+.+ +| +++||++|||||||||+||||+|||||||+|++++|
T Consensus 158 ~~fLkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam 237 (888)
T PRK09277 158 YQFLKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAM 237 (888)
T ss_pred HhHHHHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHH
Confidence 999999999999999999999999999999999999977 78 999999999999999999999999999999999999
Q ss_pred cCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeee
Q 002785 235 LGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFF 314 (881)
Q Consensus 235 ~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~f 314 (881)
+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|||||+|||
T Consensus 238 ~g~~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~f 317 (888)
T PRK09277 238 LGQPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFF 317 (888)
T ss_pred hcCcEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhHHHhhhcCCCCCC----------------CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhh
Q 002785 315 PVDHVTLQYLKLTGRSDDT----------------PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACL 378 (881)
Q Consensus 315 p~De~T~~YL~~~gr~~~~----------------~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~ 378 (881)
|+|++|++||+.|||++++ +|++|.|+++++||||+|||+||||++|||++||+|++++|.+++
T Consensus 318 p~De~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~ 397 (888)
T PRK09277 318 PIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRDPLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSA 397 (888)
T ss_pred cCChhHHHHHHhcCCChHHHHHHHHHHHHHhhhccCCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhc
Confidence 9999999999999998731 488999999999999999999999999999999999998877653
Q ss_pred cccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEec
Q 002785 379 DNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAP 458 (881)
Q Consensus 379 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~P 458 (881)
.. +.+++ ..+..++|....|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|
T Consensus 398 ~~--~~~~~---------~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~P 466 (888)
T PRK09277 398 EL--GVQGF---------GLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAP 466 (888)
T ss_pred hh--hhhhh---------hhhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeC
Confidence 21 11111 12234678888999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecC
Q 002785 459 GSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLAS 538 (881)
Q Consensus 459 gS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaS 538 (881)
||++|++||+++||+++|+++||+|++||||+||||||+++++++++|.+|++++++|||+||||+||||+..++|||||
T Consensus 467 GS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaS 546 (888)
T PRK09277 467 GSKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLAS 546 (888)
T ss_pred CCHHHHHHHHHCChHHHHHHcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCc
Q 002785 539 PPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTL 618 (881)
Q Consensus 539 P~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~w~~l~~~~~~~ 618 (881)
|+|||||||+|+|+|||++||+|+++||++|||+||||+.+||++++.+.+++++|.+.|.+++.+++.|+++++++++.
T Consensus 547 P~lvaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~ 626 (888)
T PRK09277 547 PPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPL 626 (888)
T ss_pred HHHHHHHHHcCccccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccCCCCCCcCCCCCCCCCcccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccC
Q 002785 619 YAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRR 698 (881)
Q Consensus 619 ~~w~~~styi~~pp~f~~~~~~~~~~~~i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrR 698 (881)
|+||++||||++||||++++.++.++++|.+||||+++|||||||||||||+|+++||||+||+++|+.++|||||||||
T Consensus 627 ~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrR 706 (888)
T PRK09277 627 YDWDPDSTYIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRR 706 (888)
T ss_pred cccCCCCCcccCCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccc
Confidence 99999999999999999998887778899999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCe
Q 002785 699 GNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV 778 (881)
Q Consensus 699 gN~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv 778 (881)
||||||+||||+|+|++|+|++|.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||+|++++|||
T Consensus 707 gN~evm~RgtfaNir~~N~l~~g~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lgi 786 (888)
T PRK09277 707 GNHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGV 786 (888)
T ss_pred ccchhhhheeccccchhhhcccCCccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecchhHHHhhhcccCccceeecCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEE--cCCC--EEEEEEecC
Q 002785 779 KAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIRF 854 (881)
Q Consensus 779 ~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~--~~~G--~~f~~~~~~ 854 (881)
+||||+||+||||+||+|||||||+|++++++++|+++++|+++|+... +++||+++++. ..+| ++|.+++++
T Consensus 787 ~avia~sf~rI~~~Nli~~Gilpl~~~~~~~~~~lgl~g~e~~~i~~l~---~l~p~~~v~v~~~~~~G~~~~~~~~~r~ 863 (888)
T PRK09277 787 KAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEGLE---DLKPGATVTVVITRADGEVVEFPVLCRI 863 (888)
T ss_pred cEEEEecHHHHHHhhHhhcCcceeecCCcccHHHhCCCCCceEEEcCcc---cCCCCCEEEEEEEeCCCCEEEEEEEEec
Confidence 9999999999999999999999999999999999999999999986332 47899988874 3566 789999999
Q ss_pred CCHHHHHHHHhcCHHHHHHHHHhh
Q 002785 855 DTEVELAYFDHGGILQYVIRNLIN 878 (881)
Q Consensus 855 ~t~~e~~~~~aGGiL~yv~~~~~~ 878 (881)
||+.|++||++|||||||+|++++
T Consensus 864 dt~~Ei~y~~~GGiL~yv~r~~~~ 887 (888)
T PRK09277 864 DTAVEVDYYRNGGILQYVLRDLLA 887 (888)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHhh
Confidence 999999999999999999999875
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=3.4e-252 Score=2181.31 Aligned_cols=818 Identities=45% Similarity=0.800 Sum_probs=776.9
Q ss_pred eeEEEeCC-CCCC---CCCCCCChhhHHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeEeeccceeeeccCCcHhH
Q 002785 22 FGKYYSLP-ALND---PRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPA 97 (881)
Q Consensus 22 ~~~y~~l~-~~~~---~~~~~LP~s~rvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~tg~~a 97 (881)
.|+||+|. ++.. .+++||||||||||||+||||||..++++ +++|++| ..+.||+|+|+||+||||||+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~lP~s~rillE~~lr~~d~~~~~~~-~~~~~~w----~~~~ei~f~P~RV~mqD~Tgvpa 86 (858)
T TIGR02333 12 DLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVRRCDPETLSAS-LLQIIER----KRDLDFPWYPARVVCHDILGQTA 86 (858)
T ss_pred ceEEEEcHHhhhhcccCChhhCCchHHHHHHHHhhcCCChhhHHH-HHHHHcC----CCCCeeccCcceeeeccccCcch
Confidence 69999996 6642 37999999999999999999999999998 9999999 23569999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccc-cHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCC
Q 002785 98 VVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR-SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPP 176 (881)
Q Consensus 98 ~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~-~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~pp 176 (881)
++|||+|||+++++|+||++|||.+|++||||||||+|+++ +++|+..|+.+||+||.|||+|||||+++|+|++||||
T Consensus 87 ~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~pp 166 (858)
T TIGR02333 87 LVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPA 166 (858)
T ss_pred hhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCC
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred CCceeccccccccceeeecCCCccccCeeeecCCCCcccCcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccC
Q 002785 177 GSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLR 256 (881)
Q Consensus 177 g~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~ 256 (881)
|+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|+
T Consensus 167 G~GI~HQV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~ 246 (858)
T TIGR02333 167 GNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQ 246 (858)
T ss_pred CCCEeeeEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeeeccChhhHHHhhhcCCCCCC---
Q 002785 257 DGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDT--- 333 (881)
Q Consensus 257 ~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~--- 333 (881)
+|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||++++
T Consensus 247 ~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~l 326 (858)
T TIGR02333 247 PGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKL 326 (858)
T ss_pred CCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998732
Q ss_pred -------------CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcccccCCCccCcccccccccee
Q 002785 334 -------------PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEF 400 (881)
Q Consensus 334 -------------~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 400 (881)
+|++|+|+++++||||+|||+||+|++|||++|++|+++.... .....
T Consensus 327 ve~y~k~~~l~~d~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~------------~~~~~------- 387 (858)
T TIGR02333 327 VETYAKAAGLWADSLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIA------------GPAEE------- 387 (858)
T ss_pred HHHHHHHHHhhcCcCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcccc------------ccccc-------
Confidence 5689999999999999999999999999999999998752110 00000
Q ss_pred ccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcC
Q 002785 401 NFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLG 480 (881)
Q Consensus 401 ~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG 480 (881)
...| .+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++|
T Consensus 388 ~~~g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aG 464 (858)
T TIGR02333 388 QPEG---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELEQLG 464 (858)
T ss_pred cccC---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHHHcC
Confidence 0123 4789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCcccccCCCCCc
Q 002785 481 FHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPV 560 (881)
Q Consensus 481 ~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~pl 560 (881)
|+|++||||+||||||++.++++++|.+++++.++|||+||||+||||+..+++|||||++||||||+|+|+||+++|||
T Consensus 465 f~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~dpl 544 (858)
T TIGR02333 465 FGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVL 544 (858)
T ss_pred CEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCCcCCCC
Q 002785 561 GVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMS 640 (881)
Q Consensus 561 g~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~~ 640 (881)
|.|+||++|||+||||+.+||++++++.++|++|++.|.+++.+++ ++++.+++|+||++||||++||||+++
T Consensus 545 g~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~--- 617 (858)
T TIGR02333 545 GVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA--- 617 (858)
T ss_pred ccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC---
Confidence 9999999999999999999999999999999999999999988876 788889999999999999999999987
Q ss_pred CCCCCcccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcC
Q 002785 641 PPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN 720 (881)
Q Consensus 641 ~~~~~~i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~ 720 (881)
+.++.+|++||+|+++||+||||||||||+|+++||||+||+++|+.+++|||||+||||||||+||||+|+|++|+|++
T Consensus 618 ~~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~l~~ 697 (858)
T TIGR02333 618 LAGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMVK 697 (858)
T ss_pred CCcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhhhcc
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --C--CCCCceeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhccc
Q 002785 721 --G--EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVG 796 (881)
Q Consensus 721 --g--~~g~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~ 796 (881)
| .+|++|+|+|+|+.++|||+|++|+++|+|+|||+|+|||||||||||+|+++++||++|||+||+|||++||+|
T Consensus 698 ~~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~Nl~~ 777 (858)
T TIGR02333 698 NDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLVG 777 (858)
T ss_pred ccCccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHHhhhhh
Confidence 4 479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeecCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEc--CCC--EEEEEEecCCCHHHHHHHHhcCHHHHH
Q 002785 797 MGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVT--DSG--KSFTCVIRFDTEVELAYFDHGGILQYV 872 (881)
Q Consensus 797 ~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~~--~~G--~~f~~~~~~~t~~e~~~~~aGGiL~yv 872 (881)
||||||+|.+++++++|+++++|.|+|. . +++||++++++. .+| .+|.+.+++||+.|++||++|||||||
T Consensus 778 ~G~lpl~f~~~~~~~~l~l~g~e~~~i~--~---~~~p~~~~~v~~~~~~g~~~~~~~~~r~dt~~ei~y~~~GgiL~~v 852 (858)
T TIGR02333 778 MGVLPLEFKPGTNRHTLGLDGTETFDVV--G---EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVLQRF 852 (858)
T ss_pred cCcceEEeCCCCChhhcCCCCCeeEEec--c---CCCCCCeEEEEEEeCCCCEEEEEEEEEcCCHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999883 2 478999888753 577 789999999999999999999999999
Q ss_pred HHHHhh
Q 002785 873 IRNLIN 878 (881)
Q Consensus 873 ~~~~~~ 878 (881)
+|++++
T Consensus 853 ~~~~~~ 858 (858)
T TIGR02333 853 AQDFLE 858 (858)
T ss_pred HHHhhC
Confidence 999863
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=1.1e-248 Score=2125.74 Aligned_cols=834 Identities=60% Similarity=1.020 Sum_probs=795.6
Q ss_pred ccceecCCCCceeEEEeCCCCCCC-CCCCCChhhHHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeEeeccceeee
Q 002785 11 LKTLQRPDGGEFGKYYSLPALNDP-RIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLL 89 (881)
Q Consensus 11 ~~~~~~~~~~~~~~y~~l~~~~~~-~~~~LP~s~rvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~ 89 (881)
++++.+++. .|+||+|+++... .+++||||+|||+||++|++|+ ++++++.++.|........||.|+|+||+|
T Consensus 6 ~~~~~~~~~--~~~y~~l~~~~~~~~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~~~~~~ei~~~p~RVvm 80 (861)
T COG1048 6 RKTLTVGGK--TYYYYDLPKLEESGKISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPSGKPEKEIAFRPARVVM 80 (861)
T ss_pred hhhcccCCc--eeEEeehhhhhhccccccCChhHHHHHHHhcccccc---chhHHHHHhccccccCcccccccccceeee
Confidence 467887754 8999999998653 6999999999999999999998 889999999998665566799999999999
Q ss_pred ccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcccccc
Q 002785 90 QDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFH 169 (881)
Q Consensus 90 qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~ 169 (881)
|||||+|+++|+|+||+++.++|+||+++||.+||+|+||||++++.++.++|+++|+.+||+||.|||+||+|++++|+
T Consensus 81 QD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~ 160 (861)
T COG1048 81 QDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFY 160 (861)
T ss_pred ecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeCCCCceeccccccccceeeecCCCccccCeeeecCCCCcccCcccceeeccCHHHHHHHHcCCcEEeecCeEEEE
Q 002785 170 NMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGF 249 (881)
Q Consensus 170 ~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V 249 (881)
||+|||||+||||||||||||+|||..+|++||||+|||||||||+||||+|||||||+|||++|+|||+||++|+||||
T Consensus 161 n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGV 240 (861)
T COG1048 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGV 240 (861)
T ss_pred CcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeeeccChhhHHHhhhcCC
Q 002785 250 KLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGR 329 (881)
Q Consensus 250 ~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr 329 (881)
+|+|+|++|||||||||+|+++||++|+||||||||||||++||+++|+|||||+|||||||||||+|++|++||+.|||
T Consensus 241 kLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR 320 (861)
T COG1048 241 KLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGR 320 (861)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-----------------CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcccccCCCccCccc
Q 002785 330 SDDT-----------------PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKE 392 (881)
Q Consensus 330 ~~~~-----------------~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~ 392 (881)
.+++ +|++|+|+++++||||+|+|+||||++||++++|++++++|.+.+.+....
T Consensus 321 ~~~~i~lve~y~~~~~l~~~~~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~-------- 392 (861)
T COG1048 321 SEEQVALVEAYAKAQGLWYDPADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIK-------- 392 (861)
T ss_pred chHHHHHHHHHHHHhcccCCccccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhcc--------
Confidence 8643 567999999999999999999999999999999999999998765432110
Q ss_pred cccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCc
Q 002785 393 YQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGL 472 (881)
Q Consensus 393 ~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl 472 (881)
..+...|+ .+.||+|+||+|||||||||||+|+||++|||||+++|++++|||||+|+|||++|.+||+++||
T Consensus 393 -----~~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~Gl 465 (861)
T COG1048 393 -----RVYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAGL 465 (861)
T ss_pred -----cccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHcCC
Confidence 01333444 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCccc
Q 002785 473 QKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 552 (881)
Q Consensus 473 ~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 552 (881)
+++|+++||.+++|||||||||||+|++++++.|.++++++++|+|+||||+||+||..+++|||||+||+||||||+++
T Consensus 466 ~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~i~ 545 (861)
T COG1048 466 LPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGTIN 545 (861)
T ss_pred HHHHHhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCC
Q 002785 553 IDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPP 632 (881)
Q Consensus 553 ~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~styi~~pp 632 (881)
+|+++||+|.+++|++|||+||||+.+||.+.+.+.+.+++|.+.|.++|. |+.++++++++|.|++.||||++||
T Consensus 546 ~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~pP 621 (861)
T COG1048 546 FDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRLPP 621 (861)
T ss_pred cCcccCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccCCC
Confidence 999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred CCCcCCCCCCCCCcccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccch
Q 002785 633 YFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANI 712 (881)
Q Consensus 633 ~f~~~~~~~~~~~~i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~ 712 (881)
||+.+...+.+ |+++|+|+++||+||||||||||+|+++|||++||.++|+.+.|||+|||||||||||+|+||+|+
T Consensus 622 ~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfaNi 698 (861)
T COG1048 622 FFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFANI 698 (861)
T ss_pred ccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhccc
Confidence 99998876644 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhh
Q 002785 713 RLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRS 792 (881)
Q Consensus 713 r~~n~l~~g~~g~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~ 792 (881)
|++|+|+++ +|++|+|+|+|+ |||+|++|+++|+|+|||||+|||.||||||||+++++|||+||||+|||||||+
T Consensus 699 r~~n~~~~~-~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeRIHrS 774 (861)
T COG1048 699 RIRNEMVPG-EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIHRS 774 (861)
T ss_pred ccccccccc-cCcceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHHHHHh
Confidence 999999988 999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCccceeecCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEE--cCCC--EEEEEEecCCCHHHHHHHHhcCH
Q 002785 793 NLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIRFDTEVELAYFDHGGI 868 (881)
Q Consensus 793 N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~--~~~G--~~f~~~~~~~t~~e~~~~~aGGi 868 (881)
|||+||||||||++++++++|++++.+.+.|.+.+ .++|+.+++|+ ..|| .++.+.++++|+.|++||++|||
T Consensus 775 NLi~mGvLPLqf~~~~~~~~l~l~g~e~~~i~~~~---~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~GGi 851 (861)
T COG1048 775 NLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLE---NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAGGI 851 (861)
T ss_pred hcccceeeeeeccCCCChhhcCCCCceeEeecccc---cCCCCceEEEEEEcCCCceEEEeeeeecCCHHHHHHHHcCch
Confidence 99999999999999999999999999988887665 57888877775 4566 67999999999999999999999
Q ss_pred HHHHHHHHhh
Q 002785 869 LQYVIRNLIN 878 (881)
Q Consensus 869 L~yv~~~~~~ 878 (881)
|+|++|++++
T Consensus 852 L~~v~~~~~~ 861 (861)
T COG1048 852 LNYVKRDLLK 861 (861)
T ss_pred HHHHHHHhhC
Confidence 9999998753
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=3.9e-176 Score=1542.40 Aligned_cols=684 Identities=29% Similarity=0.460 Sum_probs=591.2
Q ss_pred cHHHHHHHHhhhcCCC------------C-ceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEE
Q 002785 60 KSKDVEKIIDWETTSP------------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDL 126 (881)
Q Consensus 60 ~~~~ie~il~~~~~~~------------~-~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~l 126 (881)
.+|++||||+.+.+.. + +.+|.++|||||+||+||+|+++||++| |. + +|..|+++
T Consensus 19 ~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~-------g~-~---~v~~P~~v 87 (745)
T TIGR01340 19 PLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTC-------GL-P---QVAVPASI 87 (745)
T ss_pred CcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC-C---CCCCCCeE
Confidence 6899999999987532 2 3579999999999999999999998754 43 3 33456789
Q ss_pred EecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCccccC-ee
Q 002785 127 VIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SV 205 (881)
Q Consensus 127 viDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tv 205 (881)
++||++|++.... .|+..++.||.|+|+|++|++++| |++|+|||+||||||++|+ +++|| ++
T Consensus 88 ~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E~----------~a~PG~~i 151 (745)
T TIGR01340 88 HCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLMM 151 (745)
T ss_pred EeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchhh----------ccCCCCeE
Confidence 9999999765432 457788999999999999999999 8999999999999999994 55786 69
Q ss_pred eecCCCCcccCcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEe
Q 002785 206 VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFY 285 (881)
Q Consensus 206 vGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~ 285 (881)
|||||||||+||||+|||||||+|++++|+|+++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+
T Consensus 152 vGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~ 231 (745)
T TIGR01340 152 LGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYF 231 (745)
T ss_pred EccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccChhhhhhhhccCcccCceeeeeccChhhHHHhhhcCCCCC----------C----CCCCCcccEEEEEEcCCc
Q 002785 286 GEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDD----------T----PQSERVYSSYLELNLEEV 351 (881)
Q Consensus 286 G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~----------~----~d~~a~Y~~~ieiDLs~v 351 (881)
||||++||+++|||||||++|+|||+||||+|++|++||+.+||++. + +|++|.|+++++||||+|
T Consensus 232 G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~l 311 (745)
T TIGR01340 232 GPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSFFKLKADEGAQYDELIEIDLSKL 311 (745)
T ss_pred CcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhcccccCCCCCCeEEEEEEEccce
Confidence 99999999999999999999999999999999999999999998752 1 899999999999999999
Q ss_pred cccccCCCCCCCccccCccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHH
Q 002785 352 VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVM 431 (881)
Q Consensus 352 eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~ 431 (881)
||+||+|++|||++||+|+++++++ .|++ .+|+|||||||||||+|||+
T Consensus 312 eP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~-----~~Id~a~IGSCTNgr~~Dl~ 360 (745)
T TIGR01340 312 EPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP-----EKLSAGLIGSCTNSSYEDMS 360 (745)
T ss_pred eEeecCCCChhcccChHHhCchhhh--------------------------cCCC-----ceecEEEEEcCCCCCHHHHH
Confidence 9999999999999999999875431 0111 14779999999999999976
Q ss_pred HHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCce
Q 002785 432 LGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDI 511 (881)
Q Consensus 432 ~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~ 511 (881)
.||.+ +|+|++ +++++.|+++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++++. .+.+|+.
T Consensus 361 ~AA~i-lk~a~~--~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~-----~~~~ge~ 432 (745)
T TIGR01340 361 RCASI-VKDAEQ--AGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD-----DVKKGEP 432 (745)
T ss_pred HHHHH-hhhhhh--CCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----ccCCCCc
Confidence 66555 566654 566788999999999999999999999999999999999999999999986543 1345775
Q ss_pred EEEEeeccCCCCCCCCC-CCCCceEecCHHHHHHHHHcCcccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccC
Q 002785 512 VAAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVL 590 (881)
Q Consensus 512 ~~~~vsS~NRNF~GR~g-~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~ 590 (881)
+ ++|||+||||+|||| ...+.+|||||++||||||+|+|++|+++||| .+++|++|||+ ||+.+|+++.
T Consensus 433 ~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~~------ 502 (745)
T TIGR01340 433 N-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPEK------ 502 (745)
T ss_pred e-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccchh------
Confidence 4 679999999999995 45578999999999999999999999999999 69999999999 8999998775
Q ss_pred chhhhhhcccccCCCcccccccCC--CCCccccCCCCccccCCCCCCcCCCCCCCCCcccCceEEeecCCCCCcCccccC
Q 002785 591 PDMFKATYEAITKGNPMWNQLSVP--SGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPA 668 (881)
Q Consensus 591 ~~~f~~~y~~~~~~~~~w~~l~~~--~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~arvL~~~gd~itTDhIsPa 668 (881)
+| ...+..|+.++.+ ++..|+|+++||||++||+|++. +..+|.++|||+++||+|||||||||
T Consensus 503 --~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~~-----~~~~i~~a~vLlk~gd~iTTDHIsPA 568 (745)
T TIGR01340 503 --GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPW-----NGKDLSGLRVLIKVTGKCTTDHISAA 568 (745)
T ss_pred --cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCCC-----CcCCccCCeEEEEECCCcChhccccc
Confidence 12 2345667766553 67789999999999999999643 45789999999999999999999999
Q ss_pred CCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcC--CCCCC--ceeecCCCcccccchHHHH
Q 002785 669 GSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--GEVGP--KTIHIPTGEKLSVFDAAMR 744 (881)
Q Consensus 669 G~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~--g~~g~--~t~~~p~g~~~~v~~~a~~ 744 (881)
| .||.++ |+|.|++ .|.|.. +.+++ .+.+.|+|+.++++++|++
T Consensus 569 G---------~~L~~r----------------------g~~~~i~-~n~~~~~~n~~~~~~~~~~~~~g~~~~~~~~a~~ 616 (745)
T TIGR01340 569 G---------PWLKYK----------------------GHLDNIS-NNTLIGAVNAETGEVNKAYDLDGSKGTIPELARD 616 (745)
T ss_pred c---------hhHhhc----------------------CChhhhh-cceecccccccCCceeEEEcCCCCccchHHHHHH
Confidence 7 589874 4455555 455432 12233 5677789999999999999
Q ss_pred HHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCCccchhhccCCCCeEEEEe
Q 002785 745 YKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID 824 (881)
Q Consensus 745 y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~id 824 (881)
|++.++|+|||||+||||||||||||+++++|||+||||+||+||||+||+|||||||+|.++++++.+. .++++++.
T Consensus 617 ~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nlin~Gilpl~~~~~~~~~~i~--~gd~~~~~ 694 (745)
T TIGR01340 617 WKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQ--PGDEVATL 694 (745)
T ss_pred HHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhhhcCceeEEecCCccHhhcC--CCCEEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999999888888765 44555553
Q ss_pred -CCCCcccCCC---CceEEEE--cCCC--EEEEEEecCCCHHHHHHHHhcCHHHHH
Q 002785 825 -LPSSVSEIRP---GQDVRVV--TDSG--KSFTCVIRFDTEVELAYFDHGGILQYV 872 (881)
Q Consensus 825 -l~~~~~~l~~---g~~v~v~--~~~G--~~f~~~~~~~t~~e~~~~~aGGiL~yv 872 (881)
+.+ +.| ++.+++. ..+| .+|.+.+++ |+.|++||++||+|||+
T Consensus 695 ~l~~----~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l-t~~E~~~~~aGGiLny~ 745 (745)
T TIGR01340 695 NLYE----MLKNGGGGEVDLRVTKKNGKVFEIKLKHTV-SKDQIGFFKAGSALNLM 745 (745)
T ss_pred Chhh----ccccCCCCeEEEEEEeCCCcEEEEEEEeeC-CHHHHHHHHcCCcccCC
Confidence 443 333 5666643 3455 678888888 99999999999999985
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=1.3e-163 Score=1429.36 Aligned_cols=634 Identities=33% Similarity=0.517 Sum_probs=555.0
Q ss_pred cHHHHHHHHhhhcCCC---CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEE-EecCCCCcC
Q 002785 60 KSKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDL-VIDHSVQVD 135 (881)
Q Consensus 60 ~~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~l-viDH~v~~~ 135 (881)
++|++||||+.|.... .+.+|.++||||++||+||++++++|++| |.++ ..+| ..+ ++||+++..
T Consensus 2 ~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~-------G~~~-~~~p---~~~~~~DH~~~~~ 70 (646)
T PRK07229 2 GLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDR-VKTE---LSVQYVDHNLLQA 70 (646)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHHc-------CCCc-CCCC---CeEEECCCCCCCC
Confidence 4689999999986532 45679999999999999999999998755 6655 3344 344 899988875
Q ss_pred ccccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCccccCeeeecCCCCccc
Q 002785 136 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMI 215 (881)
Q Consensus 136 ~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~ 215 (881)
. .||.++|+|++|++++| |++|+|||+|||||+++|+|++ +| +++|||||||||+
T Consensus 71 ~---------------~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~~~ 125 (646)
T PRK07229 71 D---------------FENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLERFAF-----PG----KTLLGSDSHTPTA 125 (646)
T ss_pred C---------------hhhHHHHHHHHHHHHHh-CCeEECCCCCCcceehhhhccC-----CC----CEEEeCCCCcCcC
Confidence 3 58999999999999999 8999999999999999996654 23 6899999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChh
Q 002785 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (881)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~ 295 (881)
||||+||||||++|++++|+|+++||++||||+|+|+|+|++|||+|||||+|+++|+.+|++||+|||+|||+++||++
T Consensus 126 GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~ 205 (646)
T PRK07229 126 GGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVP 205 (646)
T ss_pred CcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeeccChhhHHHhhhcCCCCCC----CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccc
Q 002785 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDT----PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMK 371 (881)
Q Consensus 296 ~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~----~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~ 371 (881)
+|||||||++|+|||+||||+|++|++||+.+||.+++ +|++|.|+++++||||+|||+||+|++|||++||+|+.
T Consensus 206 ~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~~l~~D~~a~Y~~~i~iDLs~leP~va~P~~Pd~~~pv~e~~ 285 (646)
T PRK07229 206 ERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWVELLADPDAEYDEVIEIDLSELEPLIAGPHSPDNVVPVSEVA 285 (646)
T ss_pred HHhhhhccccccCceEEEecCcHHHHHHHHhcCCcccceeccCCCCCCeeEEEEEEccceeeeeecCCCccceeEhHHhC
Confidence 99999999999999999999999999999999997655 89999999999999999999999999999999999986
Q ss_pred hhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCc
Q 002785 372 ADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPW 451 (881)
Q Consensus 372 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~ 451 (881)
+. +|++||||||||||+||+++||++| +|+||++|
T Consensus 286 ~~---------------------------------------~I~~a~IGSCTN~~~~Dl~~aA~iL------~G~~v~~~ 320 (646)
T PRK07229 286 GI---------------------------------------KVDQVLIGSCTNSSYEDLMRAASIL------KGKKVHPK 320 (646)
T ss_pred CC---------------------------------------eEEEEEEecCCCCChHHHHHHHHHh------cCCCCCCC
Confidence 31 3779999999999999999999999 89999999
Q ss_pred eeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCC
Q 002785 452 IKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLT 531 (881)
Q Consensus 452 Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~ 531 (881)
||++|+|||++|+++|+++|++++|+++||.|.+|||++|+|+++. +. ++++ +|||+||||+||||+..
T Consensus 321 v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~~-~~-------~~~~---~vst~NRNF~GR~G~~~ 389 (646)
T PRK07229 321 VSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQA-PA-------TGNV---SLRTFNRNFPGRSGTKD 389 (646)
T ss_pred eeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCC-CC-------CCcE---EEEccCCCCCccCCCCC
Confidence 9999999999999999999999999999999999999999998543 22 3554 78999999999999988
Q ss_pred CceEecCHHHHHHHHHcCcccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccc
Q 002785 532 RANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQL 611 (881)
Q Consensus 532 ~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~w~~l 611 (881)
+.+|||||++||||||+|+|+ |+.++|++. |+++||+ ||+. ..++.++|.+ .++.|+.+
T Consensus 390 ~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~--------~~~~~~~~~~-------~~~~~~~~ 448 (646)
T PRK07229 390 AQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEG--------FAVDDAGIIA-------PAEDGSDV 448 (646)
T ss_pred CeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCcc--------ccCChhhhcC-------CCcccccc
Confidence 999999999999999999999 999999987 8999997 7882 2234444432 34557666
Q ss_pred cCCCCCccccCCCCccccCCCCCCcCCCCCCCCCcccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCC
Q 002785 612 SVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDF 691 (881)
Q Consensus 612 ~~~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~f 691 (881)
+++ .++||+++|+|+++ +++.++|+|+++|||||||||||+|. +||+
T Consensus 449 ~~~---------~~p~~~~~~~~~~~-------~~~~~~~vl~~~gd~i~TD~I~Pa~~--------~~l~--------- 495 (646)
T PRK07229 449 EVV---------RGPNIKPLPLLEPL-------PDLLEGKVLLKVGDNITTDHIMPAGA--------KWLP--------- 495 (646)
T ss_pred ccc---------CCCCCCCCccCCCC-------CcCceEEEEEEcCCCCChhccCcCCc--------chhc---------
Confidence 554 35788888887643 47899999999999999999999963 4776
Q ss_pred CcccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcc
Q 002785 692 NSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAK 771 (881)
Q Consensus 692 n~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~ 771 (881)
+|+|+|.|.+++|.+.+ |.+ +.+++..+ ++|||||+|||||||||||+|
T Consensus 496 -----~r~~~~~l~~~~f~~~~--~~f-----------------------~~~~~~~~-~~iiVaG~nfG~GSSRE~Aa~ 544 (646)
T PRK07229 496 -----YRSNIPNISEFVFEGVD--NTF-----------------------PERAKEQG-GGIVVGGENYGQGSSREHAAL 544 (646)
T ss_pred -----cCCCHHHHHHHHhccCC--hhh-----------------------hHHHHhcC-CcEEEecCccCCCCchHHHHH
Confidence 37899999999998642 221 23566544 689999999999999999999
Q ss_pred cccccCeeEEEecchhHHHhhhcccCccceeecCCccchhhccCCCCeEEEE-eCCCCcccCCCCceEEEEc-CCCEEEE
Q 002785 772 GPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTI-DLPSSVSEIRPGQDVRVVT-DSGKSFT 849 (881)
Q Consensus 772 a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~i-dl~~~~~~l~~g~~v~v~~-~~G~~f~ 849 (881)
+++++||+||||+||+||||+||+|||||||+|.++++++.+ ..+++++| |+.+ +.++.+|++.. .+|++|.
T Consensus 545 a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~~~~~~~l--~~gd~i~i~dl~~----~~~~~~v~v~~~~~~~~~~ 618 (646)
T PRK07229 545 APRYLGVKAVLAKSFARIHKANLINFGILPLTFADPADYDKI--EEGDVLEIEDLRE----FLPGGPLTVVNVTKDEEIE 618 (646)
T ss_pred HHHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecChHhHhhc--CCCCEEEEccchh----cCCCCeEEEEEecCCEEEE
Confidence 999999999999999999999999999999999777777764 45788999 6663 34556666543 4568899
Q ss_pred EEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002785 850 CVIRFDTEVELAYFDHGGILQYVIRNLI 877 (881)
Q Consensus 850 ~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 877 (881)
++.++ ++.|++|+++||||||+++++.
T Consensus 619 ~~~~l-~~~e~~i~~aGGll~~~~~~~~ 645 (646)
T PRK07229 619 VRHTL-SERQIEILLAGGALNLIKKKLA 645 (646)
T ss_pred EEccC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 88777 8999999999999999999864
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=1.5e-161 Score=1409.47 Aligned_cols=638 Identities=32% Similarity=0.490 Sum_probs=548.8
Q ss_pred HHHHHHHhhhcCCC---CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccc
Q 002785 62 KDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 138 (881)
Q Consensus 62 ~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~ 138 (881)
|++||||+.|.... .+.+|.++|||+++||+||++++.+|++|+ . + ++.|.+ +.+++||++|....
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~g-------~-~-~v~~~~-~~~~~DH~~~~~d~- 69 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEALE-------M-D-EVKTEL-AAQYCDHNMLQFDF- 69 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHHcC-------C-C-ccCCCC-eEEECCCCCCCCCh-
Confidence 46899999986533 456899999999999999999999987653 3 2 344543 57899999887531
Q ss_pred cHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCcccCc
Q 002785 139 SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 217 (881)
Q Consensus 139 ~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ga 217 (881)
||.|+|+|++|.+++| ++.|+|||+||||||++|+|+ .| +++|||||||||+||
T Consensus 70 --------------~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~t~Ga 124 (658)
T TIGR01342 70 --------------KNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHKENFA----------APGKTLLGSDSHTPTAGG 124 (658)
T ss_pred --------------hhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEchhhcc----------CCCCEEEecCcCcCCCCc
Confidence 6789999999999998 568999999999999999655 45 689999999999999
Q ss_pred ccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhh
Q 002785 218 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 297 (881)
Q Consensus 218 lG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R 297 (881)
||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+||||++||+++|
T Consensus 125 lG~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R 204 (658)
T TIGR01342 125 LGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPER 204 (658)
T ss_pred ccccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCceeeeeccChhhHHHhhhcCCCCCC----CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchh
Q 002785 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDT----PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKAD 373 (881)
Q Consensus 298 ~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~----~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~ 373 (881)
||||||++|+|||+||||+|++|++||+.++|.+++ +|++|.|+++++||||+|||+||+|++|||++||+|++.
T Consensus 205 ~Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~Pd~v~~v~e~~g- 283 (658)
T TIGR01342 205 ATITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVDLLADADAEYADEIEIDLSDLEPLIAEPHMPDNVVPVREIAG- 283 (658)
T ss_pred hhhhccchhhCceEEEEcCcHHHHHHHHhcCCchheeeccCCCCCcEEEEEEEEccceeeeeeCCCCCCCeeEhHHhCC-
Confidence 999999999999999999999999999999997654 899999999999999999999999999999999999763
Q ss_pred hhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCcee
Q 002785 374 WHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIK 453 (881)
Q Consensus 374 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk 453 (881)
. +|+++|||||||||++||++||++| +|+||+|+||
T Consensus 284 -------------~-------------------------~id~v~IGSCTn~~~~Dl~~aA~il------~G~~v~~~v~ 319 (658)
T TIGR01342 284 -------------I-------------------------EVDQVMIGSCTNGAFEDLLPAAKLL------EGREVHKDTE 319 (658)
T ss_pred -------------c-------------------------eeeeEEEeCCCCCChHHHHHHHHHh------CCCccCCCcc
Confidence 1 3568999999999999999999999 8999999999
Q ss_pred EEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCc
Q 002785 454 TSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRA 533 (881)
Q Consensus 454 ~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~ 533 (881)
++|+|||++|+++|+++|++++|+++||.|.+|||++|+|+++.+. ++++ +|||+||||+||||+..+.
T Consensus 320 ~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~~--------~~~~---~vst~NRNF~gR~G~~~~~ 388 (658)
T TIGR01342 320 FAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAPA--------SDGV---SLRSFNRNFEGRAGIEDAK 388 (658)
T ss_pred EEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCCC--------CCcE---EEEccCCCCCccCCCCCCe
Confidence 9999999999999999999999999999999999999999965432 2443 7899999999999998889
Q ss_pred eEecCHHHHHHHHHcCcccccCCCCCcccCCCCceeecccC-CCChHHHHHHhhhccCchhhhhhcccccCCCccccccc
Q 002785 534 NYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI-WPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLS 612 (881)
Q Consensus 534 ~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~di-wP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~w~~l~ 612 (881)
+|||||++||||||+|+| +|+.. ++.+ +| |+ ||+.++ |+.|...|...+ |+.++
T Consensus 389 ~yLaSP~~vaAsA~~G~i-~dp~~--l~~~-~g------~~~~p~~~~----------p~~~~~~~~~~~-----~~~~~ 443 (658)
T TIGR01342 389 VYLASPETATAAAIAGEI-IDPRD--LADD-EG------DLEAIGFEM----------GEKFPGGYDAAD-----IDIIP 443 (658)
T ss_pred EEECCHHHHHHHHHcCCc-CCHHH--hccc-cC------cccCCCCCC----------chhhcccccccc-----cccCC
Confidence 999999999999999999 46552 3322 44 45 886652 455655555433 76665
Q ss_pred C---CCCCccccCCCCccccCCCCCCcCCCCCCCCCcccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCc
Q 002785 613 V---PSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRR 689 (881)
Q Consensus 613 ~---~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~ 689 (881)
. ++.+++ .|+||++||+|++++ .+|++ |++.++|||||||||+|||++ ||.
T Consensus 444 ~~~~~~~~~~----~~p~i~~~p~~~~~~------~~i~g-rv~~~~gDnI~TD~I~Pa~~~--------~l~------- 497 (658)
T TIGR01342 444 KEEREDDDII----KGPNIKPLPEFDPLG------ADIEG-ETALIMEDNITTDHIIPAGAD--------ILK------- 497 (658)
T ss_pred CCCCCCccee----eCCCCCCCCCCCCCc------cccCc-eEEEEcCCCCChhcCCCCCcc--------ccc-------
Confidence 4 444444 389999999998774 35777 999999999999999999752 442
Q ss_pred CCCcccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchh
Q 002785 690 DFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWA 769 (881)
Q Consensus 690 ~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~A 769 (881)
+|+|.+.+.+.+|...+ .+ | .+++++|++.+.++|||||+|||||||||||
T Consensus 498 -------~r~~~~~l~~~~~~~~~-------------------p~--f-~~~~~~~~~~~~~~iiVaG~nfG~GSSREhA 548 (658)
T TIGR01342 498 -------FRSNIEAISEFTLHRID-------------------DE--F-AERAKAADEKGKAGIIIAGENYGQGSSREHA 548 (658)
T ss_pred -------cCCCHHHHhhheeeCCC-------------------ch--H-HHHhhcccccCCceEEEcCCcCCCCccHHHH
Confidence 27788888888886432 11 2 2567889888899999999999999999999
Q ss_pred cccccccCeeEEEecchhHHHhhhcccCccceeecCCccchhhccCCCCeEEEEe--CCCCcccCCCCceEEEE-cCCCE
Q 002785 770 AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID--LPSSVSEIRPGQDVRVV-TDSGK 846 (881)
Q Consensus 770 a~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~id--l~~~~~~l~~g~~v~v~-~~~G~ 846 (881)
||+++++||+||||+||+|||++||+|+|||||+|+++++++.+.. +++++|+ +.+ .+.||+...+. ..+|.
T Consensus 549 a~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~d~~~~~~i~~--Gd~l~id~~l~~---~~~~g~~~~i~~~~~g~ 623 (658)
T TIGR01342 549 ALAPMFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYAKFEL--GDDIEIPDDLAA---ALADGEDEFTINKNDDE 623 (658)
T ss_pred HHHHHHHCCCEEEEecHHHHHHhhhhhcCcceEEecChhhHHHhCC--CCEEEECchhhh---hcCCCCceEEEEecCCe
Confidence 9999999999999999999999999999999999998878877644 6778887 654 46788654443 34566
Q ss_pred EEEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002785 847 SFTCVIRFDTEVELAYFDHGGILQYVIRNLI 877 (881)
Q Consensus 847 ~f~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 877 (881)
++.+...+ ++.|++|+++||||||++++..
T Consensus 624 ~~~~~~~l-~~~e~ei~~aGGlln~~~~~~~ 653 (658)
T TIGR01342 624 EALATLDA-SEREKEILAAGGKLNLIKNKHR 653 (658)
T ss_pred EEEEeCCC-CHHHHHHHHcCCHHHHHHHhhc
Confidence 66665433 8999999999999999999864
No 12
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=1.7e-144 Score=1263.67 Aligned_cols=642 Identities=24% Similarity=0.353 Sum_probs=499.1
Q ss_pred HHHHHHHHhhhc-----CC--CCceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 002785 61 SKDVEKIIDWET-----TS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQ 133 (881)
Q Consensus 61 ~~~ie~il~~~~-----~~--~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~ 133 (881)
+|++|||++.|. +. ..+.+|.++||++|+||.|+++++ +|. ++|. +...+|+. +++++||++|
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~~v~~G~~i~i~vD~~l~hD~t~p~~~-~~~-------~~g~-~~V~~p~~-~v~~~DH~v~ 71 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL-KFM-------GIGA-SKIHNPDQ-IVMTLDHDIQ 71 (712)
T ss_pred CCHHHHHHHHhcccccCCcccCCCCEEEEecCEEEEEeccHHHHH-HHH-------HcCC-CccCCCCC-EEEEcCCCCC
Confidence 678999999886 22 245678999999999999999864 343 3565 45677764 6789999999
Q ss_pred cCccccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCccccC-eeeecCCCC
Q 002785 134 VDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 212 (881)
Q Consensus 134 ~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT 212 (881)
..... .+..++..++|+| +| +++|+|||+|||||+++| +|+++|+ ++|||||||
T Consensus 72 ~~~~~--~~~~~~~l~~fAk-------------k~-Gi~f~~~g~GI~Hqv~~E---------~g~a~PG~~ivGsDSHT 126 (712)
T TIGR00139 72 NKSDK--NLKKYKNIEEFAK-------------KH-GIDFYPAGRGIGHQIMIE---------EGFAFPGNLAVASDSHS 126 (712)
T ss_pred CCCHH--HHHHHHHHHHHHH-------------Hh-CCeEECCCCCeEeEeecc---------cCcccCCeEEEccCcCc
Confidence 87532 2233333333333 33 678899999999999999 7899996 579999999
Q ss_pred cccCcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEec--Cccc
Q 002785 213 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYG--EGMS 290 (881)
Q Consensus 213 ~~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G--~gv~ 290 (881)
||+||||+||||||++|++++|+||++|+++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+| |||+
T Consensus 127 ~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~ 206 (712)
T TIGR00139 127 NMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLN 206 (712)
T ss_pred CccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccChhhhhhhhccCcccCceeeeeccChhhHHHhhhcCCC-------------------------CC----CCCCCCccc
Q 002785 291 ELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRS-------------------------DD----TPQSERVYS 341 (881)
Q Consensus 291 ~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~-------------------------~~----~~d~~a~Y~ 341 (881)
+||+++|+|||||++|+|||+|+||+|++|++||+.++|. .. .+|++|.|+
T Consensus 207 ~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~aD~~A~Y~ 286 (712)
T TIGR00139 207 ALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEIPLKADKDAHYA 286 (712)
T ss_pred cCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhccCCCCCCCCEE
Confidence 9999999999999999999999999999999999998642 01 189999999
Q ss_pred EEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeec
Q 002785 342 SYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITS 421 (881)
Q Consensus 342 ~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgS 421 (881)
++++||||+|+|+||+|++|+|++||+++... + . +|++|||||
T Consensus 287 ~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------~------------------~-------~Id~~~IGS 329 (712)
T TIGR00139 287 KELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------D------------------I-------KIDKAYLVS 329 (712)
T ss_pred EEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------C------------------c-------eeeeEEEec
Confidence 99999999999999999999999999987420 1 1 367999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCC---CccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCC
Q 002785 422 CTNTSNPSVMLGAALVAKKACELG---LEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDI 498 (881)
Q Consensus 422 CTN~s~~dl~~aA~lLak~A~~~G---~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l 498 (881)
|||+|++||+.||.+|.++|+++| +||+|+||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|+++++
T Consensus 330 CTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~~~~~ 409 (712)
T TIGR00139 330 CTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAGL 409 (712)
T ss_pred CCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCC
Confidence 999999999999999988888763 89999999999999999999999999999999999999999999999999887
Q ss_pred chHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCcccccCCCCCcccCCCCceeecccCCCCh
Q 002785 499 DDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSS 578 (881)
Q Consensus 499 ~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~ 578 (881)
.++ +++ +|||+||||+||||+..+.+|||||++||||||+|+|+ ||..+.. + +=||..
T Consensus 410 ~~~-------gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It-----dPr~~~~---~----~~~~~~ 467 (712)
T TIGR00139 410 LEP-------GEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS-----GPAEVLS---P----EGWTEI 467 (712)
T ss_pred CCC-------CCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC-----CHHHHhc---c----cccccc
Confidence 544 565 68999999999999888899999999999999999995 5543210 0 002210
Q ss_pred --H---HHHHHhhhccCchhhhhhcccc---cCCCcccccccCCCCCccccCCCCccccC--CCCCCcCCCCCCCCCccc
Q 002785 579 --E---EVAHVVQKSVLPDMFKATYEAI---TKGNPMWNQLSVPSGTLYAWDPKSTYIHE--PPYFKDMTMSPPGPHGVK 648 (881)
Q Consensus 579 --~---ei~~~~~~~~~~~~f~~~y~~~---~~~~~~w~~l~~~~~~~~~w~~~styi~~--pp~f~~~~~~~~~~~~i~ 648 (881)
. .+.......++.+++...-..+ ....+.-.+...|. +.-+.+ .|.++.+ ++..
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-------~~~i 531 (712)
T TIGR00139 468 IFGEGDGIKEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAPA---------QEESEQGLTEILEGF-------PEEF 531 (712)
T ss_pred cccccccccCcccccCcHHHHhhhhhhccCccccchhcccccccc---------cchhccCCCCcCCCC-------CceE
Confidence 0 0000001112333331110000 00000000111111 111111 2222222 2334
Q ss_pred CceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCcee
Q 002785 649 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTI 728 (881)
Q Consensus 649 ~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~t~ 728 (881)
..+++++.|||||||||+|+ +||....++ .|.|.++.|.+.+
T Consensus 532 ~g~v~~~~gdnI~TD~I~P~----------~~~~~~~~~-------------~~~l~~~~~~~~d--------------- 573 (712)
T TIGR00139 532 SGELVFCDADNINTDGIYPG----------KYTYQDDVP-------------KEKMAQVCMENYD--------------- 573 (712)
T ss_pred EEEEEEcCCCCCchhhccch----------hhcccCCCC-------------HHHHHHhhccCCC---------------
Confidence 44899999999999999998 787421122 2456777887543
Q ss_pred ecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCCcc
Q 002785 729 HIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 808 (881)
Q Consensus 729 ~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~ 808 (881)
|+ .+.+++. +.|||+|+|||||||||||+|+++.+||+||||+||+|||+|||+|+|||||+|++.
T Consensus 574 --p~--------f~~~~~~---g~iiVaG~NfG~GSSREhA~~al~~~Gi~~ViA~SFarIf~rN~iN~Gl~~l~~~~~- 639 (712)
T TIGR00139 574 --AE--------FRTKAHE---GDILVSGFNFGCGSSREQAATAILAKGINLVVSGSFGNIFSRNSINNALLGLEIPAL- 639 (712)
T ss_pred --cc--------hhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCCcEEEEchHHHHHHhHHHhcCCceEEchhH-
Confidence 11 1234443 479999999999999999999999999999999999999999999999999999852
Q ss_pred chhhcc---------C--CCCeEEEEeCCCCcccCCCCceEEEEcCC----CE--EEEEEecCCCHHHHHHHHhcCHHHH
Q 002785 809 DAETHG---------L--TGHERYTIDLPSSVSEIRPGQDVRVVTDS----GK--SFTCVIRFDTEVELAYFDHGGILQY 871 (881)
Q Consensus 809 ~~~~l~---------~--~~~~~~~idl~~~~~~l~~g~~v~v~~~~----G~--~f~~~~~~~t~~e~~~~~aGGiL~y 871 (881)
.+.+. + ..|++++||+..+ .|++ ..+ ++ +|.+.. .++..++++++|||++|
T Consensus 640 -~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~g--------~i~~-t~g~~~~~~~~~~~~~~--~p~~~~eii~~GGl~~~ 707 (712)
T TIGR00139 640 -IKKLREKFGGADKELTRRTGWFLKWDVADA--------KIEV-QEGSLDGGPILEHKVGE--LGKNLQEIIAKGGLEGW 707 (712)
T ss_pred -HHHHHhhhcccccccccCCCCEEEEEccCC--------EEEE-CCCcccccceeEEEcCC--CCHHHHHHHHcCCHHHH
Confidence 22221 1 2578899998763 4554 222 22 555544 58899999999999999
Q ss_pred HHHHH
Q 002785 872 VIRNL 876 (881)
Q Consensus 872 v~~~~ 876 (881)
+++++
T Consensus 708 ~k~~~ 712 (712)
T TIGR00139 708 VKNAI 712 (712)
T ss_pred HHhcC
Confidence 99874
No 13
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=5.4e-141 Score=1239.71 Aligned_cols=678 Identities=22% Similarity=0.283 Sum_probs=512.5
Q ss_pred cHHHHHHHHhhhcCCCCceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccc
Q 002785 60 KSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 139 (881)
Q Consensus 60 ~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~ 139 (881)
++|++||||+.|.....+..|.+++|++++||.|+++++..|. ++|.+ ++ | +|+.+++||+++....+.
T Consensus 34 ~~TlaeKIL~~h~~~~~g~~v~~~vD~~~~~D~t~~~~~~~f~-------~~G~~--~v-p-~~~v~~~DH~~~~~~g~~ 102 (751)
T PRK11413 34 KGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIIQTAK-------ASGME--RF-P-LPYVLTNCHNSLCAVGGT 102 (751)
T ss_pred hCCHHHHHHHHhhCCCCCCEEEEEcceeeeehhhHHHHHHHHH-------HcCCC--cC-C-CCEEEECCCCCcCCCCCC
Confidence 5689999999997765556799999999999999998887664 45664 44 4 689999999999875333
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCcccCcc
Q 002785 140 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGL 218 (881)
Q Consensus 140 ~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~gal 218 (881)
. |.+.|.|++...++| ++.|+|||+|||||+++|+|+ .| +++|||||||| +|||
T Consensus 103 ~-------------n~~~~~~~~~~a~k~-Gi~f~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~-~Gal 157 (751)
T PRK11413 103 I-------------NEDDHVFGLSAAQKY-GGIFVPPHIAVIHQYMREMMA----------GGGKMILGSDSHTR-YGAL 157 (751)
T ss_pred c-------------cHHHHHHHHHHHHHc-CCcEECCCCCeECcCchhhcc----------CCCcEEEeeCcCcc-cchh
Confidence 2 223444444444445 467999999999999999554 56 58999999996 8999
Q ss_pred cceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCc-ceeEEEEecCcccccChhhh
Q 002785 219 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV-VGMFVEFYGEGMSELSLADR 297 (881)
Q Consensus 219 G~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~-~gk~vEf~G~gv~~Ls~~~R 297 (881)
|+|||||||+|++++|+|+++|+++||+|+|+|+|+|++||+||||||+|+++|+.+|+ +||+|||+||||++||+++|
T Consensus 158 G~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R 237 (751)
T PRK11413 158 GTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFR 237 (751)
T ss_pred hhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred hhhhccCcccCceeeeeccChhhHHHhhhcCCCCCC----CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchh
Q 002785 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDT----PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKAD 373 (881)
Q Consensus 298 ~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~----~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~ 373 (881)
||||||++|+|||+||||+|++|++||+.++|.+.+ +|++|.|+++++||||+|||+||+|++|||++||+|+.++
T Consensus 238 ~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~~l~~D~~A~Yd~~ieiDLs~leP~VA~P~~Pdnv~~v~e~~~~ 317 (751)
T PRK11413 238 NGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCELNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDELNQN 317 (751)
T ss_pred hhhhhcccccCceEEEecCcHHHHHHHHhCCChhhceeccCCCCCCeeEEEEEEcccceeeecCCCChhhCcChhhcccc
Confidence 999999999999999999999999999999998665 8999999999999999999999999999999999999998
Q ss_pred hhhhhcccccCCCccCccccccccceeccCCCcccccCC--ceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC-C
Q 002785 374 WHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHG--DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVK-P 450 (881)
Q Consensus 374 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g--~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~-~ 450 (881)
+.++++.. +.++..+ ......+++.+ +|.++ +|+|||||||||||++||+.||++| +|++|+ +
T Consensus 318 ~~~~~~~~-~~~~~~~----~~~~~~~~~~~---ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~IL------kgk~v~~~ 383 (751)
T PRK11413 318 LTDILREV-EIESERV----AHGKAKLSLLD---KIENGRLKVQQGIIAGCSGGNYENVIAAANAL------RGQSCGND 383 (751)
T ss_pred hhhhcchh-hhhhhhh----hhhhccccccc---cccCCCcEeeeEEEecCCCCCHHHHHHHHHHh------cCcccCCC
Confidence 88777643 1111111 00011111110 12212 6889999999999999999999999 999998 5
Q ss_pred ceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCC
Q 002785 451 WIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPL 530 (881)
Q Consensus 451 ~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~ 530 (881)
+||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|+++. +. ++++ +|+|+||||+||||+.
T Consensus 384 ~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~-~~-------~ge~---~isTsNRNF~GR~G~~ 452 (751)
T PRK11413 384 TFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDT-PA-------NNGL---SIRHTTRNFPNREGSK 452 (751)
T ss_pred ceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCc-CC-------CCCE---EEeecCCCCCCCCCCc
Confidence 79999999999999999999999999999999999999999998644 32 3554 7899999999999998
Q ss_pred CCc-----eEecCHHHHHHHHHc-CcccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhh-hhcccccC
Q 002785 531 TRA-----NYLASPPLVVAYALA-GSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFK-ATYEAITK 603 (881)
Q Consensus 531 ~~~-----~yLaSP~~VaA~Ala-G~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~-~~y~~~~~ 603 (881)
.++ +||+||+++||+|+. |+|+ +|-..+. ++ +.. ++.++.++|. ..|.....
T Consensus 453 ~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~---~~p---~~~~~~~~y~~~~~~~~~~ 511 (751)
T PRK11413 453 PANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD---NVP---EYAFDVTPYKNRVYQGFGK 511 (751)
T ss_pred cccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc---cCC---CcccCccccccccccCCCC
Confidence 886 677778999999999 6995 4533320 11 111 1234444443 23321111
Q ss_pred CCcccccccCCCCCccccCCCCccccCCCCCCcCCCCCCCCCcccCceEEeecCCCCC-cCccccCCCCCCCChHhhHHH
Q 002785 604 GNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT-TDHISPAGSIHKDSPAAKYLM 682 (881)
Q Consensus 604 ~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~arvL~~~gd~it-TDhIsPaG~i~~~spa~~~L~ 682 (881)
. ..+.-+..-|.|.+++... ++.+-.-.+|+.++||||| |||||||| +||.
T Consensus 512 ~------------------~~~~~~~~gPni~~~p~~~-~l~~~~~~kv~~k~~D~itTTD~i~paG---------~~l~ 563 (751)
T PRK11413 512 G------------------ATQQPLIYGPNIKDWPEMG-ALTDNILLKVCSKILDPVTTTDELIPSG---------ETSS 563 (751)
T ss_pred C------------------CCcceEEeCcCCCCCCCCC-CCCCcEEEEEEEEeCCCCccccccccCC---------Cccc
Confidence 1 1112222333333333222 2233345589999999997 99999998 4555
Q ss_pred HcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCC--CceeecCCCcccccchHHHHH--------------H
Q 002785 683 ERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG--PKTIHIPTGEKLSVFDAAMRY--------------K 746 (881)
Q Consensus 683 ~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g--~~t~~~p~g~~~~v~~~a~~y--------------~ 746 (881)
+ |||-+.+.+.+|... .|.+..-... ..-.....|. +.+.|+.| +
T Consensus 564 ~--------------Rsn~~~is~~~~~~~--d~~~~~ra~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~ 624 (751)
T PRK11413 564 Y--------------RSNPLGLAEFTLSRR--DPGYVGRSKAVAELENQRLAGN---VSELTEVFARIKQIAGQEHIDPL 624 (751)
T ss_pred c--------------ccCHHHHhhhhcccc--ChhhHHHHHHHhhhhhhhhcCC---cHHHHHHHHhhhhcccccccccc
Confidence 3 677777777777433 2222200000 0000001121 11333444 4
Q ss_pred hcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHH-HhhhcccCccceeecCCccchhhccCCCCeEEEEeC
Q 002785 747 NEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERI-HRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDL 825 (881)
Q Consensus 747 ~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rI-f~~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~idl 825 (881)
+.|.++ +|+|.||||||||||||++++.|||+||||+||+|| ||+||+|+|||||+|.+.. .+..+++++|+.
T Consensus 625 ~~~~~~-iv~~~nyG~GSSREhAAla~r~LGi~AVIAkSFARIf~RsNlIN~GilpL~f~~~~-----~i~~GD~l~id~ 698 (751)
T PRK11413 625 QTEIGS-MVYAVKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPFQMAEEP-----TFEVGDYIYIPG 698 (751)
T ss_pred ccCceE-EEEEeCCCCCccHHHHHHHHHHhCceEEEEeeehHHHHhhhhhhcCccceecCchh-----hCCCCCEEEEec
Confidence 566654 555599999999999999999999999999999999 5559999999999998642 356788899985
Q ss_pred CCCcccCC-CCceE--EEEcCCC--EEEEEEecCCCHHHHHHHHhcCHHHHHHH
Q 002785 826 PSSVSEIR-PGQDV--RVVTDSG--KSFTCVIRFDTEVELAYFDHGGILQYVIR 874 (881)
Q Consensus 826 ~~~~~~l~-~g~~v--~v~~~~G--~~f~~~~~~~t~~e~~~~~aGGiL~yv~~ 874 (881)
... .+. +++.+ .+...+| +.+.+.+.-.++.+++||++||+|||+++
T Consensus 699 ~~~--~l~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~eil~aGGllny~k~ 750 (751)
T PRK11413 699 IRA--ALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGCLINYNKN 750 (751)
T ss_pred hhh--hhhcCCCceeEEEEeCCCceeeEEEEeCCCCHHHHHHHHcCCHHHHhhc
Confidence 532 232 22233 3333443 44555542248999999999999999976
No 14
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-134 Score=1120.59 Aligned_cols=692 Identities=31% Similarity=0.475 Sum_probs=572.8
Q ss_pred cHHHHHHHHhhhcCCC-------CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCC
Q 002785 60 KSKDVEKIIDWETTSP-------KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSV 132 (881)
Q Consensus 60 ~~~~ie~il~~~~~~~-------~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v 132 (881)
..+..|||+..+.... .+.++.++||||+|||.|+.|++++|+ ..|... + .+|..+++||.+
T Consensus 58 p~tl~EKIlyshl~~p~~~~i~Rg~~Yl~lrPdrva~qDasaqma~LqFm-------s~Gl~k--v--avPstIhCdhli 126 (778)
T KOG0453|consen 58 PLTLTEKILYSHLDNPPEQKIVRGGSYLKLRPDRVAMQDASAQMALLQFM-------SSGLKK--V--AVPSTIHCDHLI 126 (778)
T ss_pred CchhhHHHHHhhccCCcccceecccceEEEcccceecccchhhHHHHHHH-------hcCccc--c--cCCceEEeccee
Confidence 4678889887663322 234689999999999999999999985 345542 2 246789999999
Q ss_pred CcCccccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCccccC-eeeecCCC
Q 002785 133 QVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSH 211 (881)
Q Consensus 133 ~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSH 211 (881)
.+...+..| +.+.-+.|+|.|.||..+.++| |+.||+||+||+||++|| + ++||+ ++||||||
T Consensus 127 ~a~~gg~~D-----l~~a~~~Nkevydfl~saakky-gi~Fw~pGsGIiHQIvlE---------n-YAfPG~m~igTDSH 190 (778)
T KOG0453|consen 127 EAQVGGDKD-----LQRASDLNKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLE---------N-YAFPGLMMIGTDSH 190 (778)
T ss_pred eeccCCcch-----hhhhhhhhHHHHHHHHHHHHhc-CCCccCCCCceeeeeeee---------c-ccCCcceEEeccCC
Confidence 887766554 4566789999999999998876 799999999999999999 3 66885 68999999
Q ss_pred CcccCcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccc
Q 002785 212 TTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSE 291 (881)
Q Consensus 212 T~~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~ 291 (881)
|+++||||+|++||||+||+.+|+++||.++.|+++||+|+|+|+.|+++|||||++.+.|..+|++|++||||||||.+
T Consensus 191 Tpn~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~s 270 (778)
T KOG0453|consen 191 TPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNS 270 (778)
T ss_pred CCCCCccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccce
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhhhccCcccCceeeeeccChhhHHHhhhcCCCCCC------------CCCCCcccEEEEEEcCCccccccCCC
Q 002785 292 LSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDT------------PQSERVYSSYLELNLEEVVPCVSGPK 359 (881)
Q Consensus 292 Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~------------~d~~a~Y~~~ieiDLs~veP~vA~P~ 359 (881)
||++.|+|||||++|.|||+|+||.|+.+++||+.|||.+.. +|++|.|+++|+||||+|+|+|.||+
T Consensus 271 lSctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~ia~~a~~~~~~~l~AD~~a~Ydk~ieIdLstL~P~vnGPf 350 (778)
T KOG0453|consen 271 LSCTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNEIAREARETLDAILAADKGAHYDKIIEIDLSTLEPHVNGPF 350 (778)
T ss_pred eccccceeeccccccccccccccCCCHHHHHHHHHhCcccchhhhHHhhhhcccCCCCCCcceEEEEEhhhcccccCCCC
Confidence 999999999999999999999999999999999999998543 89999999999999999999999999
Q ss_pred CCCCccccCccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHH
Q 002785 360 RPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAK 439 (881)
Q Consensus 360 ~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak 439 (881)
+||-..|++++.+..+ -+||+.. |..++||||||+||+|+-.+|.++ +
T Consensus 351 Tpdl~~pvskl~e~~~--------------------------kn~wp~~-----i~~gligSCTNSsyeDm~raa~iv-~ 398 (778)
T KOG0453|consen 351 TPDLSTPVSKLGENSE--------------------------KNGWPIK-----IKVGLIGSCTNSSYEDMSRAADIV-K 398 (778)
T ss_pred CccccChHHHHhHHhh--------------------------hcCCcee-----eeeeEEEeecCccHHHHHHHHHHH-H
Confidence 9999999999875321 1355543 457899999999999988877764 8
Q ss_pred HHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeecc
Q 002785 440 KACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSG 519 (881)
Q Consensus 440 ~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~ 519 (881)
+|..+|+| +.|.+.|+|||.+|+..++|.|+++.|+++|+.+++.+||||||+|..-. |++||.. +.|+|.
T Consensus 399 ~a~~~glk--~~v~F~VtpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~d------vk~GE~n-tivts~ 469 (778)
T KOG0453|consen 399 QAKGKGLK--PKVPFYVTPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRKD------IKKGEKN-TIVTSY 469 (778)
T ss_pred HHHhcCCC--CCcceEeccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCccccccccc------ccCCCcC-ceeeee
Confidence 88877765 55999999999999999999999999999999999999999999986511 4455652 358999
Q ss_pred CCCCCCCCCCCC-CceEecCHHHHHHHHHcCcccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhc
Q 002785 520 NRNFEGRVHPLT-RANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATY 598 (881)
Q Consensus 520 NRNF~GR~g~~~-~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y 598 (881)
||||.||++... ...||+||++|+|+|++|++.+|+++|.+ ...||+.+.|+. |..+|+.+ +.++|.. ..|
T Consensus 470 NRNFtgRnd~np~t~afltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~g~--~ty 541 (778)
T KOG0453|consen 470 NRNFTGRNDANPATHAFLTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDPGQ--DTY 541 (778)
T ss_pred cccccccCCCCcchhhcccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCCCc--ccc
Confidence 999999998665 56799999999999999999999999998 677999999886 77777644 3344321 223
Q ss_pred ccccCCCcccccccCCC-CCccccCCCCccccCCCCCCcCCCCCCCCCcccCceEEeecCCCCCcCccccCCCCCCCChH
Q 002785 599 EAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPA 677 (881)
Q Consensus 599 ~~~~~~~~~w~~l~~~~-~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~arvL~~~gd~itTDhIsPaG~i~~~spa 677 (881)
+.. +.+. .....-|+.|+.++....|+. +.-+|+++..+|+++..+|||||||-||
T Consensus 542 ~ap----------~~~~~~~~v~v~p~s~rlqlLepF~~-----w~gkd~edl~ilikv~gkCttDhIsaaG-------- 598 (778)
T KOG0453|consen 542 QAP----------PSSSSVVEVDVDPTSDRLQLLEPFDK-----WDGKDLEDLKILIKVKGKCTTDHISAAG-------- 598 (778)
T ss_pred cCC----------CCCCCcceeecCCcccchhhcCCCCc-----ccccccccceEEEEEecccCccccccCC--------
Confidence 321 1111 124566889999988877753 4557899999999999999999999998
Q ss_pred hhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCCeEEEeC
Q 002785 678 AKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAG 757 (881)
Q Consensus 678 ~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG 757 (881)
.||+++|+-+.-.|.+=--.-|-|.| +-..-.+..+||...+.+.|..||+.|++||+|++
T Consensus 599 -pwlkY~Ghl~nisnn~~igain~En~------------------e~n~~~n~~~ge~~~vp~~~~~yk~~g~~wvvv~~ 659 (778)
T KOG0453|consen 599 -PWLKYRGHLENISNNDLIGAINKENG------------------EANCVKNYLTGEFGTVPDTARDYKKHGIRWVVVGD 659 (778)
T ss_pred -cceeccchhhhcccchhhhhcchhhh------------------hhhhhhhccccccCCcCchhhhHHhcCceeEEEcc
Confidence 59999886544433210000111111 11122234578888899999999999999999999
Q ss_pred CccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCCccchhhccCCCCeEEEEeCCCCcccCCCCce
Q 002785 758 AEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQD 837 (881)
Q Consensus 758 ~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~ 837 (881)
.|||.||||||||..++.+|+++||.+||+|||.+|++++|+|||+|.+..+++++. ..+.+++. ++.++.||+.
T Consensus 660 ~NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydKi~--~~d~~~~~---~L~~~~~gkp 734 (778)
T KOG0453|consen 660 ENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDKIR--PADKVSIK---GLTRRTPGKP 734 (778)
T ss_pred cccCCCcchhhhhhchhhcCCcEEEeehhHHHHHhhhhhcceeeeeccCHHHhhhcC--hhcccchh---hhhhhcCCCc
Confidence 999999999999999999999999999999999999999999999999998998864 33334432 2336678877
Q ss_pred EEEE--cCCCEEEEEEecCC-CHHHHHHHHhcCHHHHHHH
Q 002785 838 VRVV--TDSGKSFTCVIRFD-TEVELAYFDHGGILQYVIR 874 (881)
Q Consensus 838 v~v~--~~~G~~f~~~~~~~-t~~e~~~~~aGGiL~yv~~ 874 (881)
+++. ..+|+.++.++.+. +..|++||++|..|+++++
T Consensus 735 ~t~~vt~~dg~~~~~kl~ht~n~~Qi~~fkaGsaln~~~e 774 (778)
T KOG0453|consen 735 LTVVVTKKDGKEVEIKLNHTGNKLQIEWFKAGSALNVMKE 774 (778)
T ss_pred eeEEEECCCCcEEEEecccccchhhhHhhhcchHHHHHHH
Confidence 6654 46788888888664 7899999999999998765
No 15
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=2.6e-130 Score=1080.69 Aligned_cols=400 Identities=76% Similarity=1.212 Sum_probs=389.6
Q ss_pred eeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002785 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (881)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~ 165 (881)
||+|||+||+|+++|||||||+++++|+||+++||.+|++|++||++|++..+..+++.+|+..+++||.|||.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred ccccccceeCCCCceeccccccccceeeec----CCCccccCeeeecCCCCcccCcccceeeccCHHHHHHHHcCCcEEe
Q 002785 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFN----TNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSM 241 (881)
Q Consensus 166 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~----~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~ 241 (881)
++|.|++++|||+||||||++|+||++++. +.|+++|+++|||||||||+||||+||||||++|++++|+||++||
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCcccc
Confidence 999999999999999999999999999984 3589999999999999999999999999999999999999999999
Q ss_pred ecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeeeccChhhH
Q 002785 242 VLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTL 321 (881)
Q Consensus 242 ~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~ 321 (881)
++||+|+|+|+|+|++|||+|||||+|++.|+.+|++|++|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 161 ~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred CCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCCCCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcccccCCCccCccccccccceec
Q 002785 322 QYLKLTGRSDDTPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFN 401 (881)
Q Consensus 322 ~YL~~~gr~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 401 (881)
+++++||||+|||+||+|++|||++||..
T Consensus 237 -------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~~-------------------------------- 265 (404)
T cd01586 237 -------------------TQVVELDLSTVEPSVSGPKRPQDRVPLHG-------------------------------- 265 (404)
T ss_pred -------------------ceEEEEEcccceeeecCCCCcccccCcCC--------------------------------
Confidence 69999999999999999999999999821
Q ss_pred cCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCc
Q 002785 402 FHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGF 481 (881)
Q Consensus 402 ~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~ 481 (881)
+|++||||||||||+||++.||++|+|||++||+||+||||++|+|||++|+++|+++|++++|.++||
T Consensus 266 -----------~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aGa 334 (404)
T cd01586 266 -----------SVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASGLLPYLEKLGF 334 (404)
T ss_pred -----------cEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCChHHHHHHcCC
Confidence 367999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCcc
Q 002785 482 HIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 551 (881)
Q Consensus 482 ~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i 551 (881)
.|.+|||++|+|+++++.+.++..+.+||+++++|||+||||+||||+..+.+|||||++|||+||+|+|
T Consensus 335 ~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~vAAsAi~G~i 404 (404)
T cd01586 335 HVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404 (404)
T ss_pred EEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHHHHHHhcccC
Confidence 9999999999999999998888889999998889999999999999999999999999999999999986
No 16
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=4e-119 Score=1018.09 Aligned_cols=439 Identities=28% Similarity=0.409 Sum_probs=388.2
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccc
Q 002785 60 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 138 (881)
Q Consensus 60 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~ 138 (881)
.+|++|||++.+.... ++.+|.++|||+++||+|+++++.+|++| |. ..+||.++ ++++||++|+++++
T Consensus 3 ~~Tl~eKI~~~h~~~~~~~g~v~~~vD~~~~hD~t~p~a~~~~~~~-------g~--~v~~P~~~-~~~~DH~vp~~~~~ 72 (471)
T PRK12466 3 PRTLYDKLWDSHTVARLDDGHVLLYIDRHLLNEYTSPQAFSGLRAR-------GR--TVRRPDLT-LAVVDHVVPTRPGR 72 (471)
T ss_pred CcCHHHHHHHHhcCCCCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC--cccCCCCe-EEEeCCCCCCCccc
Confidence 4789999999986532 34489999999999999999999998653 42 47788875 58999999999732
Q ss_pred ---cHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCccccC-eeeecCCCCcc
Q 002785 139 ---SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTM 214 (881)
Q Consensus 139 ---~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~ 214 (881)
..+....|+.+++++|.++|.+ + .+++.+||+|||||+++| +|+++|+ ++|||||||||
T Consensus 73 ~~~~~~~~~~~~~~~~r~~a~~~gi------~--~~~~~~p~~GI~Hqv~~E---------~G~~~PG~~ivg~DSHT~t 135 (471)
T PRK12466 73 DRGITDPGGALQVDYLRENCADFGI------R--LFDVDDPRQGIVHVVAPE---------LGLTLPGMVIVCGDSHTTT 135 (471)
T ss_pred cccccCHHHHHHHHHHHHHHHHcCC------e--eeccCCCCCCEEeEEccc---------cCcccCCceEEccCCCcCC
Confidence 3346678888899999998874 1 245678999999999999 8999996 69999999999
Q ss_pred cCcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccCh
Q 002785 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSL 294 (881)
Q Consensus 215 ~galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~ 294 (881)
+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+||||++||+
T Consensus 136 ~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~ 215 (471)
T PRK12466 136 YGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSM 215 (471)
T ss_pred cChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCcccCceeeeeccChhhHHHhhhcCCCCC----------C----CCCCCcccEEEEEEcCCccccccCCCC
Q 002785 295 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDD----------T----PQSERVYSSYLELNLEEVVPCVSGPKR 360 (881)
Q Consensus 295 ~~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~----------~----~d~~a~Y~~~ieiDLs~veP~vA~P~~ 360 (881)
++|||||||++|+||++||||+|++|++||+.++|.++ + +|++|.|+++++||||+|||+||+|++
T Consensus 216 ~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~va~P~~ 295 (471)
T PRK12466 216 EGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKGALWDAALAYWRTLRSDADAVFDREVEIDAADIAPQVTWGTS 295 (471)
T ss_pred HHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhHHHHHHHHhhhhcccCCCCCceEEEEEEEcccceEeecCCCC
Confidence 99999999999999999999999999999999998531 1 899999999999999999999999999
Q ss_pred CCCccccCccchhhhhhhcccccCCCccCccccccccceeccCCCcc--cccCCceEEEEeecCCCCCChHHHHHHHHHH
Q 002785 361 PHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVIAAITSCTNTSNPSVMLGAALVA 438 (881)
Q Consensus 361 P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~--~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLa 438 (881)
|+|++||+|+.+++.++++.. ++......++|++... .+.+.+|++||||||||||+|||++||++|
T Consensus 296 P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~aA~il- 364 (471)
T PRK12466 296 PDQAVPITGRVPDPAAEADPA----------RRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAAAAVL- 364 (471)
T ss_pred hhhceEccccCcChhhhcchh----------hhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHHHHHH-
Confidence 999999999998887766532 0111122344544322 256679999999999999999999999999
Q ss_pred HHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeec
Q 002785 439 KKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLS 518 (881)
Q Consensus 439 k~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS 518 (881)
||+||+||||++|+|||++|+++|+++||+++|.++||.|.+|||++|+|+++++.++ |++ +|||
T Consensus 365 -----kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~---~vsT 429 (471)
T PRK12466 365 -----RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLAP-------GER---CAST 429 (471)
T ss_pred -----cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---EEEe
Confidence 9999999999999999999999999999999999999999999999999999877544 565 6899
Q ss_pred cCCCCCCCCCCCCCceEecCHHHHHHHHHcCccc
Q 002785 519 GNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 552 (881)
Q Consensus 519 ~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 552 (881)
+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 430 ~NRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~I~ 462 (471)
T PRK12466 430 TNRNFEGRQGPG-ARTHLMSPAMVAAAAVAGHIT 462 (471)
T ss_pred cCCCCCCCCCCC-CcEEECCHHHHHHHHhCcEeC
Confidence 999999999994 556999999999999999994
No 17
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=5.4e-119 Score=1015.65 Aligned_cols=439 Identities=26% Similarity=0.373 Sum_probs=383.8
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc-
Q 002785 60 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA- 137 (881)
Q Consensus 60 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~- 137 (881)
++|++|||++.+.... .+..+.++|||+++||+|+++++. +|| ++|. +.++|. ++++++||++|++..
T Consensus 2 ~~Tl~eKI~~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~---~~~----~~g~--~v~~p~-~~~~~~DH~vp~~~~~ 71 (465)
T TIGR00170 2 PRTLYEKLFDAHIVYEAEGETPLLYIDRHLIHEVTSPQAFE---GLR----QAGR--KVRRPQ-KTFATMDHNIPTQNRD 71 (465)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeeeeeecccchHHHHH---HHH----HcCC--CcCCCc-CEEEEeCCCCCCCCcc
Confidence 3689999999987643 455688999999999999999974 344 3452 355554 689999999999763
Q ss_pred -ccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCccc
Q 002785 138 -RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (881)
Q Consensus 138 -~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (881)
+..++...|+.+++++|.+||.+ + .+++.|||+||||||++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi------~--~~~v~~p~~GI~Hqv~~E---------~g~~~PG~~ivgtDSHT~t~ 134 (465)
T TIGR00170 72 FNIKDEVAKIQVTELEKNCKEFGV------R--LFDLHSVDQGIVHVMGPE---------QGLTLPGMTIVCGDSHTSTH 134 (465)
T ss_pred ccccCHHHHHHHHHHHHHHHHhCC------e--eeccCCCCCCEeCeEccc---------cCcccCCceEEecCCCcccc
Confidence 46667788999999999998875 2 246779999999999999 899999 6899999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChh
Q 002785 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (881)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~ 295 (881)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+|+||++||++
T Consensus 135 GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~ 214 (465)
T TIGR00170 135 GAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSME 214 (465)
T ss_pred ccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeeccChhhHHHhhhcCCCCC----------C----CCCCCcccEEEEEEcCCccccccCCCCC
Q 002785 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDD----------T----PQSERVYSSYLELNLEEVVPCVSGPKRP 361 (881)
Q Consensus 296 ~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~----------~----~d~~a~Y~~~ieiDLs~veP~vA~P~~P 361 (881)
+|||||||++|+||++||||+|++|++||+.+++... + +|++|.|+++++||||+|||+||+|++|
T Consensus 215 ~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~~~~~~~~~~~~~~l~~d~~a~Y~~~i~iDls~leP~Va~P~~P 294 (465)
T TIGR00170 215 GRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPKGKEFDKAVAYWKTLKTDEGAVFDTVITLEANDISPQVTWGTNP 294 (465)
T ss_pred HhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccchhHHHHHHHhhhhccCCCCCceeEEEEEEcccceeeecCCCCh
Confidence 9999999999999999999999999999998876321 1 8999999999999999999999999999
Q ss_pred CCccccCccchhhhhhhcccccCCCccCccccccccceeccCCCcc--cccCCceEEEEeecCCCCCChHHHHHHHHHHH
Q 002785 362 HDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVIAAITSCTNTSNPSVMLGAALVAK 439 (881)
Q Consensus 362 ~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~--~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak 439 (881)
+|++||+|+.+++....+.. ++......++|+|... .+.+++|++||||||||||++||+.||++|
T Consensus 295 ~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~vl-- 362 (465)
T TIGR00170 295 GQVLPVNSEVPDPESFADPV----------DKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAAAVI-- 362 (465)
T ss_pred hhccCccccCCChhhhcchh----------hhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHHHHh--
Confidence 99999999876655432211 1111112233333322 366779999999999999999999999999
Q ss_pred HHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeecc
Q 002785 440 KACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSG 519 (881)
Q Consensus 440 ~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~ 519 (881)
||+||+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++++.++ +++ ++||+
T Consensus 363 ----kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~---~isTs 428 (465)
T TIGR00170 363 ----KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDRLPE-------GER---CASTS 428 (465)
T ss_pred ----cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---EEEec
Confidence 9999999999999999999999999999999999999999999999999999888654 554 56899
Q ss_pred CCCCCCCCCCCCCceEecCHHHHHHHHHcCccc
Q 002785 520 NRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 552 (881)
Q Consensus 520 NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 552 (881)
||||+||||+. ..+|||||++||||||+|+|+
T Consensus 429 NRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 429 NRNFEGRQGRG-GRTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred CCCCCCCCCCC-CCEEEcCHHHHHHHHhCceec
Confidence 99999999985 467999999999999999995
No 18
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=4.9e-118 Score=1009.21 Aligned_cols=439 Identities=26% Similarity=0.363 Sum_probs=386.8
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc-
Q 002785 60 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA- 137 (881)
Q Consensus 60 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~- 137 (881)
.+|++|||++.+.... .+..|.+++||+++||.|+++++..| + ++|. +.++|+. +.+++||++|++..
T Consensus 2 ~~tl~eKIl~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~---~----~~g~--~v~~p~~-~~~~~DH~v~~~~~~ 71 (466)
T PRK05478 2 GKTLYDKLWDAHVVHEEEDGPDLLYIDRHLVHEVTSPQAFEGL---R----LAGR--KVRRPDL-TFATMDHNVPTTDRD 71 (466)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeccceeecccHHHHHHHH---H----HcCC--CccCCCC-eEEEcCCCCCCCccc
Confidence 3689999999987643 45568899999999999999998544 3 3454 3677764 77899999999975
Q ss_pred -ccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCccc
Q 002785 138 -RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (881)
Q Consensus 138 -~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (881)
+..++...|+.+++++|.+||.|. .+++.+|++|||||+++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi~--------~~~~~~~~~GI~Hqv~~E---------~g~~~PG~~ivGtDSHT~t~ 134 (466)
T PRK05478 72 LPIADPVSRIQVETLEKNCKEFGIT--------LFDLGDPRQGIVHVVGPE---------QGLTLPGMTIVCGDSHTSTH 134 (466)
T ss_pred ccccCHHHHHHHHHHHHHHHHcCCe--------eeccCCCCCCEeCeEccc---------cccccCCceEEecCCCcccc
Confidence 466677889999999999998872 245678999999999999 789999 6899999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChh
Q 002785 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (881)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~ 295 (881)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+||||++||++
T Consensus 135 GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~ 214 (466)
T PRK05478 135 GAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSME 214 (466)
T ss_pred chhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeeccChhhHHHhhhcCCCC----------CC----CCCCCcccEEEEEEcCCccccccCCCCC
Q 002785 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSD----------DT----PQSERVYSSYLELNLEEVVPCVSGPKRP 361 (881)
Q Consensus 296 ~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~----------~~----~d~~a~Y~~~ieiDLs~veP~vA~P~~P 361 (881)
+|+|||||++|+|||+||||+|++|++||+.+++.. .+ +|++|+|+++++||||+|||+||+|++|
T Consensus 215 ~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~~~~~~~~a~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~P 294 (466)
T PRK05478 215 GRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAPKGEDWDKAVAYWKTLKSDEDAVFDKVVTLDAADIEPQVTWGTNP 294 (466)
T ss_pred HHhhhhhcccccCceeeeecCCHhHHHHHhcCCccccHHHHHHHHHhhhcccCCCCCceeEEEEEEcccceeeecCCCCh
Confidence 999999999999999999999999999999766532 11 7999999999999999999999999999
Q ss_pred CCccccCccchhhhhhhcccccCCCccCccccccccceeccCCCcc--cccCCceEEEEeecCCCCCChHHHHHHHHHHH
Q 002785 362 HDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVIAAITSCTNTSNPSVMLGAALVAK 439 (881)
Q Consensus 362 ~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~--~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak 439 (881)
||++||+|+.++++++++++. +.......+|++... .+.+++|++||||||||||+||+++||++|
T Consensus 295 ~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~il-- 362 (466)
T PRK05478 295 GQVISIDGKVPDPEDFADPVK----------RASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAAVV-- 362 (466)
T ss_pred hhceEccccCcChhhhcchhh----------hhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHHHHh--
Confidence 999999999998887776431 111112234433211 267789999999999999999999999999
Q ss_pred HHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeecc
Q 002785 440 KACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSG 519 (881)
Q Consensus 440 ~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~ 519 (881)
||+||+||||++|+|||++|++||+++|++++|.++||.|.+|||++|+|++++.. .+|++ +|||+
T Consensus 363 ----kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~l-------~~ge~---~vst~ 428 (466)
T PRK05478 363 ----KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDKL-------PPGER---CASTS 428 (466)
T ss_pred ----cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCC-------CCCCE---EEEec
Confidence 99999999999999999999999999999999999999999999999999985543 35776 68899
Q ss_pred CCCCCCCCCCCCCceEecCHHHHHHHHHcCccc
Q 002785 520 NRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 552 (881)
Q Consensus 520 NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 552 (881)
||||+||||+.. .+|||||++||||||+|+|+
T Consensus 429 NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~It 460 (466)
T PRK05478 429 NRNFEGRQGKGG-RTHLVSPAMAAAAAITGHFV 460 (466)
T ss_pred CCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCcC
Confidence 999999999665 58999999999999999994
No 19
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=2.3e-119 Score=1022.86 Aligned_cols=442 Identities=40% Similarity=0.640 Sum_probs=355.3
Q ss_pred HHHHHHHhhhcCCC----CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc
Q 002785 62 KDVEKIIDWETTSP----KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (881)
Q Consensus 62 ~~ie~il~~~~~~~----~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~ 137 (881)
|+.|||++.+.... .+.+|.++|||+|+||+||++++.+|++|+. ++++|.. +++++||++|++..
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~g~---------~v~~p~~-v~~~~DH~vp~~~~ 70 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRAMGE---------KVRDPDK-VVLVIDHSVPADDI 70 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHHHCH---------CCHSTTS-EEEE--SS--BSS-
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHHCCC---------ceecCCC-ceEEecCccccccc
Confidence 57899999886532 2457999999999999999999999987753 2345543 78999999999876
Q ss_pred ccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCC-CceeccccccccceeeecCCCccccC-eeeecCCCCccc
Q 002785 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMI 215 (881)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg-~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~ 215 (881)
+.. |+..++++|+++|+|++|.+++|. +.+++|+ .||||||++| .|++.|+ ++|||||||||+
T Consensus 71 ~~~-----~~~~~~~~n~~~~~~l~~~~~~~g-i~~~~~~~~GI~Hqv~~E---------~g~~~PG~~vvg~DSHT~t~ 135 (465)
T PF00330_consen 71 GSA-----NLQIEDARNRERYRFLRWFAKEFG-IKFFDPGGPGICHQVLPE---------EGLVLPGMTVVGTDSHTCTY 135 (465)
T ss_dssp HHH-----HHHHHHHHCHHHHHHHHHHHHHCT-TEEEETTSSBSHHHHHHH---------HTT-STTEEEEESSTTGGGG
T ss_pred cch-----hcchhhHHHHHHHHHHHHHHHHcC-CceecCCCCCeeeeeehh---------hccccceeEEEeCCCCcchh
Confidence 433 777899999999999999998885 5555555 5999999999 7889995 799999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChh
Q 002785 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (881)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~ 295 (881)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||++
T Consensus 136 GalGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~ 215 (465)
T PF00330_consen 136 GALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMD 215 (465)
T ss_dssp GGGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HH
T ss_pred hhceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeeccChhhHHHhhhcCCCCC--------------CCCCCCcccEEEEEEcCCccccccCCCCC
Q 002785 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDD--------------TPQSERVYSSYLELNLEEVVPCVSGPKRP 361 (881)
Q Consensus 296 ~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~--------------~~d~~a~Y~~~ieiDLs~veP~vA~P~~P 361 (881)
+|||||||++|+||++||||+|++|++||+.++|.+. ++|++|.|+++++||||+|||+||+|++|
T Consensus 216 ~R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~~D~dA~Y~~~i~iDls~leP~va~P~~P 295 (465)
T PF00330_consen 216 DRMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLKSDPDAEYDKVIEIDLSELEPQVAGPHSP 295 (465)
T ss_dssp HHHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS--TT---SEEEEEEGGG-SSEEE-SSST
T ss_pred hhhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhccCCCccCeeEEEEEEcCccccccccCCCC
Confidence 9999999999999999999999999999999998754 18999999999999999999999999999
Q ss_pred CCccccCccchhhhhhhcccccCCCccCccccccccceeccCC--CcccccCCceEEEEeecCCCCCChHHHHHHHHHHH
Q 002785 362 HDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHG--TPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAK 439 (881)
Q Consensus 362 ~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g--~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak 439 (881)
||++||+|+.+++.++++.. . +......++|++ ....+.+++|++||||||||||+||+++||++|++
T Consensus 296 ~~~~~v~e~~~~~~~~~~~v-~---------~~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~il~~ 365 (465)
T PF00330_consen 296 DNVVPVSEVAPDFASILDPV-E---------REAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAAGILKG 365 (465)
T ss_dssp TSEEEHHHHHHHHHHHH--------------CCGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccc-c---------ccccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHHHHhhc
Confidence 99999999999988766532 1 111122345543 23578889999999999999999999999999987
Q ss_pred HHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhcc-CceEEEEeec
Q 002785 440 KACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITE-NDIVAAAVLS 518 (881)
Q Consensus 440 ~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~-~~~~~~~vsS 518 (881)
+|. +||+||||++|+|||++|+++|+++||+++|+++||.|.+|||++|+|+++ +.+. +.+ +++ +|||
T Consensus 366 ~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~~----~~~~~~~---~vst 434 (465)
T PF00330_consen 366 KAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPDV----LAPLGEV---CVST 434 (465)
T ss_dssp HHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---CC----HCCTTEE---EEES
T ss_pred hhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCcc----cccccce---EEEe
Confidence 776 799999999999999999999999999999999999999999999999995 2211 222 443 7899
Q ss_pred cCCCCCCCCCCCCCceEecCHHHHHHHHHcC
Q 002785 519 GNRNFEGRVHPLTRANYLASPPLVVAYALAG 549 (881)
Q Consensus 519 ~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG 549 (881)
+||||+||||+..+.+|||||++||||||+|
T Consensus 435 ~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 435 SNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp SSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred cCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 9999999999999999999999999999998
No 20
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=4.5e-117 Score=985.29 Aligned_cols=397 Identities=34% Similarity=0.528 Sum_probs=355.3
Q ss_pred eeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002785 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (881)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~ 165 (881)
|||+||+||++++++|++| | +++.++| .++++||++|++.++.++ ...++.+|.++|+|++|.+
T Consensus 1 rv~~~D~tg~~a~~~f~~~-------g-~~~v~~p---~~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------G-LPKVAVP---STIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CeeEEecccHHHHHHHHHh-------C-CCCCCCC---CeEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHH
Confidence 7999999999999999754 4 3445555 478999999998766544 3567889999999999999
Q ss_pred ccccccceeCCCCceeccccccccceeeecCCCccccC-eeeecCCCCcccCcccceeeccCHHHHHHHHcCCcEEeecC
Q 002785 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (881)
Q Consensus 166 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vP 244 (881)
++| |++|+|||+||||||++|+ +++|+ ++|||||||||+||||+||||||++|++++|+|+++||++|
T Consensus 65 ~~~-gi~~~~~g~GI~Hqv~~E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vP 133 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCP 133 (412)
T ss_pred HHc-CCeEECCCCCeeceEchhh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCC
Confidence 998 8999999999999999993 56786 69999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeeeccChhhHHHh
Q 002785 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (881)
Q Consensus 245 evv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~YL 324 (881)
|+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|+|+++||+++|||||||++|+|||+||||+|++|++||
T Consensus 134 e~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl 213 (412)
T cd01584 134 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYL 213 (412)
T ss_pred CEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCC----------CC--CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcccccCCCccCccc
Q 002785 325 KLTGRSD----------DT--PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKE 392 (881)
Q Consensus 325 ~~~gr~~----------~~--~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~ 392 (881)
+.++|++ .. +|++|.|+++++||||+|||+||+|++|||++||+|+.+.+.+
T Consensus 214 ~~~~~~~~~~~~~~y~~~~l~~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~---------------- 277 (412)
T cd01584 214 KATGRAEIADLADEFKDDLLVADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK---------------- 277 (412)
T ss_pred HhcCchHHHHHHHHHHhcccCCCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc----------------
Confidence 9999874 22 8999999999999999999999999999999999999864321
Q ss_pred cccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCc
Q 002785 393 YQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGL 472 (881)
Q Consensus 393 ~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl 472 (881)
.|++ -+|++||||||||||+|||+.|| .++|+|+++|+|++ ||++|+|||++|++||+++||
T Consensus 278 ----------~g~~-----~~Id~a~IGSCTNgr~~Dl~~AA-~ilk~a~~~g~~v~--vr~~v~PgS~~V~~~~~~~Gl 339 (412)
T cd01584 278 ----------NGWP-----LDLRVGLIGSCTNSSYEDMGRAA-SIAKQALAHGLKCK--SIFTITPGSEQIRATIERDGL 339 (412)
T ss_pred ----------cCCc-----eeEEEEEEeccCCCChHHHHHHH-HHHhhHHhCCCCCC--CcEEEeCCCHHHHHHHHHCCc
Confidence 1111 15789999999999999966555 66699999999998 899999999999999999999
Q ss_pred HHHHHhcCcEEeccCcccccCCCCC-CchHHHhhhccCceEEEEeeccCCCCCCCC-CCCCCceEecCHHHHHHHHHcCc
Q 002785 473 QKYLNHLGFHIVGYGCTTCIGNSGD-IDDAVAAAITENDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVVAYALAGS 550 (881)
Q Consensus 473 ~~~l~~aG~~i~~~GC~~CiG~~g~-l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~-g~~~~~~yLaSP~~VaA~AlaG~ 550 (881)
+++|.++||.|.+|||++|+|++++ .. .+++.. ++|||+||||+||| |.....+|||||++||||||+|+
T Consensus 340 ~~~l~~aG~~i~~pgCg~C~G~~~~~~~-------~~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~vaAsAi~G~ 411 (412)
T cd01584 340 LQTFRDAGGIVLANACGPCIGQWDRKDI-------KKGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVTAMAIAGT 411 (412)
T ss_pred HHHHHHcCCEEcCCcccccccCCCCccc-------CCCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHHHHHhccc
Confidence 9999999999999999999999875 22 123321 36899999999999 45456799999999999999998
Q ss_pred c
Q 002785 551 V 551 (881)
Q Consensus 551 i 551 (881)
+
T Consensus 412 ~ 412 (412)
T cd01584 412 L 412 (412)
T ss_pred C
Confidence 5
No 21
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=5.4e-115 Score=962.87 Aligned_cols=377 Identities=28% Similarity=0.422 Sum_probs=341.6
Q ss_pred eeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002785 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (881)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~ 165 (881)
|+++||+|+++++. +||+ +|.+ ..+||+. +++++||++|++. ....|+.+++.+|.++|.
T Consensus 1 ~~~~hD~t~p~a~~---~~~~----~g~~-~v~dp~k-~~~~~DH~vp~~~-----~~~~~~~~~~r~~a~~~g------ 60 (382)
T cd01583 1 LHLVHDVTSPQAFE---GLRE----AGRE-KVWDPEK-IVAVFDHNVPTPD-----IKAAEQVKTLRKFAKEFG------ 60 (382)
T ss_pred CEEEEeccHHHHHH---HHHH----hCCc-ccCCCCc-eEEEcCCCCCCCC-----HHHHHHHHHHHHHHHHhC------
Confidence 68999999999984 4444 3332 2444542 5899999999983 345566667777776544
Q ss_pred ccccccceeCC-CCceeccccccccceeeecCCCcccc-CeeeecCCCCcccCcccceeeccCHHHHHHHHcCCcEEeec
Q 002785 166 NAFHNMLVVPP-GSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (881)
Q Consensus 166 ~~f~~~~~~pp-g~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~v 243 (881)
++++++ |+|||||+++| +|++.| +++|||||||||+||||+||||||++|++++|+||++|+++
T Consensus 61 -----i~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~v 126 (382)
T cd01583 61 -----INFFDVGRQGICHVILPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRV 126 (382)
T ss_pred -----cccccCCCCCEeeEEecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeC
Confidence 234556 89999999999 788889 68999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeeeccChhhHHH
Q 002785 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (881)
Q Consensus 244 Pevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~Y 323 (881)
||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+||||++||+++|||||||++|+||++||||+|++|++|
T Consensus 127 Peti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~y 206 (382)
T cd01583 127 PETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEY 206 (382)
T ss_pred CcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCC---CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcccccCCCccCcccccccccee
Q 002785 324 LKLTGRSDDT---PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEF 400 (881)
Q Consensus 324 L~~~gr~~~~---~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 400 (881)
|+.++|+... +|++|.|+++++||||+|||+||+|++|||++||+|+.+.
T Consensus 207 L~~~~~~~~~~~~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~~--------------------------- 259 (382)
T cd01583 207 LKGRGKAYWKELKSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEGI--------------------------- 259 (382)
T ss_pred HHhcCccchhhcCCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCCc---------------------------
Confidence 9999987544 8999999999999999999999999999999999998731
Q ss_pred ccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcC
Q 002785 401 NFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLG 480 (881)
Q Consensus 401 ~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG 480 (881)
+|+|||||||||||+||+++||++| ||+||+|+||++|+|||++|+++|+++|++++|.++|
T Consensus 260 ------------~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~~~~~~~G~~~~l~~aG 321 (382)
T cd01583 260 ------------KIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVYKQAEKEGLIEIFIEAG 321 (382)
T ss_pred ------------ceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHCC
Confidence 3679999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCcc
Q 002785 481 FHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 551 (881)
Q Consensus 481 ~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i 551 (881)
|.|.+|||++|+|+++++.. +||+ +|||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 322 a~i~~pgCg~C~G~~~g~~~-------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~i 382 (382)
T cd01583 322 AEVRPPGCGACLGGHMGVLA-------PGER---CVSTSNRNFKGRMGSPGARIYLASPATAAASAITGEI 382 (382)
T ss_pred CEEeCCCcccccCCCCCcCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhcccC
Confidence 99999999999999877643 4675 6899999999999998889999999999999999986
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=1.5e-114 Score=965.12 Aligned_cols=402 Identities=28% Similarity=0.418 Sum_probs=363.2
Q ss_pred HHHHHHHhhhcCCC--CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccc
Q 002785 62 KDVEKIIDWETTSP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 139 (881)
Q Consensus 62 ~~ie~il~~~~~~~--~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~ 139 (881)
|++|||++.+.+.. .+..+.+++|++++||.|+++++..|. ++|. ++.+||+. +.+++||++|+....
T Consensus 1 Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g~-~~v~~P~~-v~~~~DH~~p~~~~~- 70 (412)
T TIGR01343 1 TIAEKILSKHSGKEVYAGDLIVAEIDQAMVHDITAPLAIRRLE-------EYGI-DKVFDPER-IVIVVDHVVPASTIK- 70 (412)
T ss_pred CHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcCC-CcCCCCCc-EEEEcCCCCCCCChh-
Confidence 47899999987642 455688999999999999999987664 4454 34677764 788999999988643
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhhccccccccc-eeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCcccCc
Q 002785 140 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 217 (881)
Q Consensus 140 ~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~-~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ga 217 (881)
.+..++..++|.|. + ++. |++||+|||||+++| +|++.| +++|||||||||+||
T Consensus 71 -~a~~~~~~r~fa~~--------~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~iig~DSHT~t~Ga 126 (412)
T TIGR01343 71 -AAEMQKLAREFVKK--------T------GIKHFFDVGEGICHQVLPE---------EGLVKPGDLVVGADSHTCTYGA 126 (412)
T ss_pred -HHHHHHHHHHHHHH--------c------CCceeecCCCCEEEEEchh---------hCcCCCCcEEEecCCCcCCcCc
Confidence 44566667777762 3 343 689999999999999 889999 689999999999999
Q ss_pred ccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhh
Q 002785 218 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 297 (881)
Q Consensus 218 lG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R 297 (881)
||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|
T Consensus 127 lGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R 206 (412)
T TIGR01343 127 LGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEER 206 (412)
T ss_pred hhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCceeeeeccChhhHHHhhhcCCCCCC---CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhh
Q 002785 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDT---PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADW 374 (881)
Q Consensus 298 ~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~---~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~ 374 (881)
||||||++|+||++||||+|++|++||+.++|.+.. +|++|.|+++++||||+|||+||+|++|+|++||+|+..
T Consensus 207 ~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~~~~~~D~da~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g-- 284 (412)
T TIGR01343 207 MTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPFRVYKSDEDAEYAKEVEIDASQLEPVVAAPHNVDNVHPVSEVEG-- 284 (412)
T ss_pred hhhhccccccCceeeEecCcHHHHHHHHhhCcccccccCCCCCCCEEEEEEEEcccceeeEecCCCCCcEEEhHHhCC--
Confidence 999999999999999999999999999999876544 899999999999999999999999999999999999763
Q ss_pred hhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeE
Q 002785 375 HACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 454 (881)
Q Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~ 454 (881)
. +|+|||||||||||++|+++||++| +|+||+||||+
T Consensus 285 ------------~-------------------------~id~~~IGSCTngr~~Dl~~aA~il------~G~kv~~~v~~ 321 (412)
T TIGR01343 285 ------------I-------------------------EVDQVFIGSCTNGRIEDLRVAAKIL------KGRKVAPDVRL 321 (412)
T ss_pred ------------C-------------------------eeeEEEEecCCCCChHHHHHHHHHH------cCCCCCCCCCE
Confidence 1 3679999999999999999999999 89999999999
Q ss_pred EEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCce
Q 002785 455 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRAN 534 (881)
Q Consensus 455 ~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~ 534 (881)
+|+|||++|+++|+++|++++|.++||.|.+|||++|+|++.+.+. +|++ +|||+||||+||||+..+.+
T Consensus 322 ~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l~-------~ge~---~vsT~NRNF~GR~G~~~~~~ 391 (412)
T TIGR01343 322 IVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVLA-------PGEV---CISTSNRNFKGRMGDPNAEI 391 (412)
T ss_pred EEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEEecCCCCCCCCCCCCCcE
Confidence 9999999999999999999999999999999999999998755432 3565 68999999999999888889
Q ss_pred EecCHHHHHHHHHcCccc
Q 002785 535 YLASPPLVVAYALAGSVN 552 (881)
Q Consensus 535 yLaSP~~VaA~AlaG~i~ 552 (881)
|||||++||||||+|+|+
T Consensus 392 yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 392 YLASPATAAASAVKGRIA 409 (412)
T ss_pred EECCHHHHHHHHhCcccC
Confidence 999999999999999995
No 23
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=5.8e-114 Score=961.82 Aligned_cols=404 Identities=30% Similarity=0.453 Sum_probs=363.6
Q ss_pred cHHHHHHHHhhhcCCC--CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc
Q 002785 60 KSKDVEKIIDWETTSP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (881)
Q Consensus 60 ~~~~ie~il~~~~~~~--~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~ 137 (881)
.+|++||||+.+.... .+..|.+++|++++||.|+++++..|. ++|.+ ..++|+. +.+++||++|+...
T Consensus 2 ~~Tl~eKIl~~h~~~~v~~G~~v~v~vD~~~~hD~t~p~a~~~~~-------~~g~~-~v~~P~~-~~~~~DH~~p~~~~ 72 (418)
T PRK00402 2 GMTLAEKILARHSGRDVSPGDIVEAKVDLVMAHDITGPLAIKEFE-------KIGGD-KVFDPSK-IVIVFDHFVPAKDI 72 (418)
T ss_pred CcCHHHHHHHHhcCCCCCCCCEEEEECCEEEEecccHHHHHHHHH-------HcCCC-ccCCCCc-EEEECCCCCCCCCh
Confidence 4689999999987643 455688999999999999999987664 34543 4667764 78899999999864
Q ss_pred ccHHHHHhhhHHHHHHhhhhhhhhhhccccccccc-eeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCccc
Q 002785 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (881)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~-~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (881)
..+..++..++|.|. + +++ |++||+|||||+++| +|++.| +++|||||||||+
T Consensus 73 --~~a~~~~~~r~fa~~--------~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (418)
T PRK00402 73 --KSAEQQKILREFAKE--------Q------GIPNFFDVGEGICHQVLPE---------KGLVRPGDVVVGADSHTCTY 127 (418)
T ss_pred --hhHHHHHHHHHHHHH--------c------CCcceeCCCCCEeeEehhh---------cCccCCCcEEEeCCCCcccc
Confidence 334566666666662 2 344 688999999999999 788999 5899999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChh
Q 002785 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (881)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~ 295 (881)
||||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||++
T Consensus 128 GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~ 207 (418)
T PRK00402 128 GALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMD 207 (418)
T ss_pred CccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeeccChhhHHHhhhcCCCCCC---CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccch
Q 002785 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDT---PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKA 372 (881)
Q Consensus 296 ~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~---~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~ 372 (881)
+|||||||++|+||++||||+|++|++||+.+++.+.. +|++|.|+++++||||+|||+||+|++|+|++||+|+.+
T Consensus 208 ~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g 287 (418)
T PRK00402 208 ERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRDYKPWKSDEDAEYEEVYEIDLSKLEPQVAAPHLPDNVKPVSEVEG 287 (418)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHHhhcccccccccCCCCCCEEEEEEEEcccceeeeecCCCccceeEchhhCC
Confidence 99999999999999999999999999999998765443 899999999999999999999999999999999999763
Q ss_pred hhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCce
Q 002785 373 DWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWI 452 (881)
Q Consensus 373 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~V 452 (881)
. +|++||||||||||+||+++||++| ||+||+|+|
T Consensus 288 ~---------------------------------------~id~~~IGSCTngr~eDl~~aA~il------~G~kv~~~V 322 (418)
T PRK00402 288 T---------------------------------------KVDQVFIGSCTNGRLEDLRIAAEIL------KGRKVAPGV 322 (418)
T ss_pred c---------------------------------------eeeEEEEecCCCCChHHHHHHHHHH------cCCCCCCCc
Confidence 1 3679999999999999999999999 999999999
Q ss_pred eEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCC
Q 002785 453 KTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTR 532 (881)
Q Consensus 453 k~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~ 532 (881)
|++|+|||++|+++|+++|++++|+++||.|.+|||++|+|++.+.+. +|++ +|||+||||+||||+..+
T Consensus 323 ~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~vsT~NRNF~GR~G~~~~ 392 (418)
T PRK00402 323 RLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVLA-------PGEV---CLSTTNRNFKGRMGSPES 392 (418)
T ss_pred cEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEEecCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999998654433 3564 689999999999998888
Q ss_pred ceEecCHHHHHHHHHcCccc
Q 002785 533 ANYLASPPLVVAYALAGSVN 552 (881)
Q Consensus 533 ~~yLaSP~~VaA~AlaG~i~ 552 (881)
.+|||||++||||||+|+|+
T Consensus 393 ~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 393 EVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred eEEECCHHHHHHHHhCCeeC
Confidence 99999999999999999994
No 24
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=5.8e-114 Score=960.35 Aligned_cols=402 Identities=28% Similarity=0.408 Sum_probs=364.4
Q ss_pred HHHHHHHHhhhcCCC--CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccc
Q 002785 61 SKDVEKIIDWETTSP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 138 (881)
Q Consensus 61 ~~~ie~il~~~~~~~--~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~ 138 (881)
||++|||++.+.+.. .+..|.+++|++++||.|+++++..|. ++| .+.++|+. +.+++||++|+....
T Consensus 1 ~Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g--~~v~~p~~-~~~~~DH~~p~~~~~ 70 (412)
T TIGR02086 1 MTLAEKILSEKVGRPVEAGEIVEVEVDLAMAHDGTGPLAIETLR-------ELG--ARVEDPEK-IVIFFDHVVPPPTVE 70 (412)
T ss_pred CCHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcC--CcccCCCC-EEEECCCCCCCCCHH
Confidence 478999999986542 455788999999999999999987664 445 45778875 778999999998643
Q ss_pred cHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCcccCc
Q 002785 139 SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 217 (881)
Q Consensus 139 ~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ga 217 (881)
.+..++..++|.|. + ++++++||+|||||+++| .|++.| +++|||||||||+||
T Consensus 71 --~a~~~~~~r~fa~~--------~------gi~~~~~g~GI~H~v~~E---------~G~~~PG~~iig~DSHT~t~Ga 125 (412)
T TIGR02086 71 --AANRQKEIREFAKE--------H------GIPVFDVGEGICHQVLVE---------EGYAGPGMVVVGGDSHTCTSGA 125 (412)
T ss_pred --HHHHHHHHHHHHHH--------c------CCcEECCCCCeEeEEhhh---------cCccCCCcEEEecCCCccccch
Confidence 33445555555552 2 466789999999999999 889999 579999999999999
Q ss_pred ccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhh
Q 002785 218 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 297 (881)
Q Consensus 218 lG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R 297 (881)
||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+++||+++|
T Consensus 126 lGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R 205 (412)
T TIGR02086 126 VGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDER 205 (412)
T ss_pred hhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCceeeeeccChhhHHHhhhcCCCCCC---CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhh
Q 002785 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDT---PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADW 374 (881)
Q Consensus 298 ~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~---~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~ 374 (881)
||||||++|+||++||||+|++|++||+.++|.++. +|++|.|+++++||||+|||+||+|++|+|++|++|+.+.
T Consensus 206 ~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~va~P~~P~nv~~v~~~~~~- 284 (412)
T TIGR02086 206 MTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEFRILRPDPGAKYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVEGT- 284 (412)
T ss_pred hhhhhcccccCceeeEecCCHHHHHHHHhcCCcccccccCCCCCCEEEEEEEEccceeEEecCCCChHhcccchhhccc-
Confidence 999999999999999999999999999999987644 8999999999999999999999999999999999998631
Q ss_pred hhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeE
Q 002785 375 HACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 454 (881)
Q Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~ 454 (881)
+|++||||||||||++||++||++| ||+||+|+||+
T Consensus 285 --------------------------------------~id~~~IGSCTngr~~Dl~~aA~vL------kG~kv~~~v~~ 320 (412)
T TIGR02086 285 --------------------------------------EIDQVFIGSCTNGRIEDLRIAAEIL------EGRRVHPDVRL 320 (412)
T ss_pred --------------------------------------ceeEEEEeccCCCChHHHHHHHHHH------cCCCCCCCcCE
Confidence 3569999999999999999999999 99999999999
Q ss_pred EEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCce
Q 002785 455 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRAN 534 (881)
Q Consensus 455 ~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~ 534 (881)
+|+|||++|+++|+++|++++|.++||.|.+|||++|+|++..++. +|++ +|||+||||+||||+..+.+
T Consensus 321 ~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~vsT~NRNF~GR~G~~~~~~ 390 (412)
T TIGR02086 321 IVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVLG-------DGEV---CVSTTNRNFRGRMGSPDAEI 390 (412)
T ss_pred EEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEEecCCCCCcCCCCCCCcE
Confidence 9999999999999999999999999999999999999999865443 4665 68999999999999888889
Q ss_pred EecCHHHHHHHHHcCccc
Q 002785 535 YLASPPLVVAYALAGSVN 552 (881)
Q Consensus 535 yLaSP~~VaA~AlaG~i~ 552 (881)
|||||++||||||+|+|+
T Consensus 391 yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 391 YLASPATAAASAVEGYIT 408 (412)
T ss_pred EECCHHHHHHHHhCCccC
Confidence 999999999999999995
No 25
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=1.2e-113 Score=949.47 Aligned_cols=375 Identities=36% Similarity=0.561 Sum_probs=346.5
Q ss_pred ceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhc
Q 002785 85 ARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWG 164 (881)
Q Consensus 85 drvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~ 164 (881)
|++|+||.|+++++..| +++|.+ ..++|. +.+++||++|+.. .+|.++|+|++|.
T Consensus 1 D~~~~hD~t~p~a~~~~-------~~~g~~-~v~~~~--~~~~~DH~~p~~~---------------~~~a~~~~~lr~~ 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQF-------EAMGVD-RVRTEL--SVSYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CceEEEeccHHHHHHHH-------HHcCCC-eeCCCC--eEEEeCCCCCCCC---------------hHHHHHHHHHHHH
Confidence 78999999999998765 356664 345553 7889999999864 2567888899998
Q ss_pred cccccccceeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCcccCcccceeeccCHHHHHHHHcCCcEEeec
Q 002785 165 SNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (881)
Q Consensus 165 ~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~v 243 (881)
.++| ++++++||+|||||+++|+ ++.| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 56 a~~~-gi~~~~~g~GI~H~v~~E~----------~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~v 124 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLER----------FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPM 124 (380)
T ss_pred HHHc-CCEEECCCCCeeeeecHhh----------ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccC
Confidence 8888 7999999999999999994 4556 68999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeeeccChhhHHH
Q 002785 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (881)
Q Consensus 244 Pevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~Y 323 (881)
||+|+|+|+|+|++||++|||+|+|++.|+.+|++||+|||+|||+++||+++|||||||++|+||++||||+|++|++|
T Consensus 125 Petv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~y 204 (380)
T cd01585 125 PKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREF 204 (380)
T ss_pred CcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCC----CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcccccCCCccCccccccccce
Q 002785 324 LKLTGRSDDT----PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAE 399 (881)
Q Consensus 324 L~~~gr~~~~----~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 399 (881)
|+.+||.+++ +|++|.|+++++||||+|||+||+|++|+|++||+|+...
T Consensus 205 l~~~gr~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g~-------------------------- 258 (380)
T cd01585 205 LAAQGREDDWVELAADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAGI-------------------------- 258 (380)
T ss_pred HHhcCCchhccccCCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCCc--------------------------
Confidence 9999987554 8999999999999999999999999999999999997630
Q ss_pred eccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhc
Q 002785 400 FNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHL 479 (881)
Q Consensus 400 ~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~a 479 (881)
+|+|||||||||+|+||+++||++| ||+||+||||++|+|||++|+++|+++|++++|+++
T Consensus 259 -------------~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~~~a~~~Gl~~~l~~a 319 (380)
T cd01585 259 -------------KVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEMLARNGALADLLAA 319 (380)
T ss_pred -------------eEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHc
Confidence 3679999999999999999999999 999999999999999999999999999999999999
Q ss_pred CcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCcc
Q 002785 480 GFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 551 (881)
Q Consensus 480 G~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i 551 (881)
||.|.+|||++|+|+++.+. +|++ +|||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 320 Ga~i~~pgCg~C~G~~~~~~--------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaAsAi~G~i 380 (380)
T cd01585 320 GARILESACGPCIGMGQAPP--------TGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAAAALTGVI 380 (380)
T ss_pred CCEEeCCCceeccCCCCCCC--------CCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHHHHhCccC
Confidence 99999999999999976632 3565 6899999999999988889999999999999999986
No 26
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=4.8e-113 Score=952.37 Aligned_cols=406 Identities=32% Similarity=0.449 Sum_probs=363.0
Q ss_pred HHHHHHHHhhhcCCC---CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc
Q 002785 61 SKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (881)
Q Consensus 61 ~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~ 137 (881)
+|++|||++.+.+.. .+..|.+++|++|+||.|+++++..|. ++|. +..+||+. +.+++||++|+..
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~-------~~g~-~~V~dp~~-v~~~~DH~vpa~~- 70 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFK-------EYGG-KKVFDPDR-VALVPDHFTPNKD- 70 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHH-------HcCC-CcCCCCCC-EEEEeCCCCCCCC-
Confidence 478999999997633 455788999999999999999987653 4554 45677764 7889999999985
Q ss_pred ccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCC-ceeccccccccceeeecCCCcccc-CeeeecCCCCccc
Q 002785 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGS-GIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (881)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~-GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (881)
...+..++..++|.| ++++++ |+++|+ |||||+++| +|++.| +++|||||||||+
T Consensus 71 -~~~a~~~~~~r~fa~--------~~gi~~-----f~d~g~~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (419)
T TIGR02083 71 -IKSAEQCKMMREFAR--------EQGIEK-----FFEIGNMGIEHALLPE---------EGIVKPGDLIIGADSHTCTY 127 (419)
T ss_pred -HHHHHHHHHHHHHHH--------HcCCcc-----eecCCCcceeeeeccc---------cCccCCCeEEEecCCCcccc
Confidence 345566777777777 334333 567885 999999999 899999 5799999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChh
Q 002785 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (881)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~ 295 (881)
||||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~ 207 (419)
T TIGR02083 128 GALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMD 207 (419)
T ss_pred CccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeeccChhhHHHhhhcCCCCCC---CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccch
Q 002785 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDT---PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKA 372 (881)
Q Consensus 296 ~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~---~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~ 372 (881)
+|||||||++|+||++||||+|++|++||+.+++++.. +|++|.|+++++||||+|||+||+|++|+|++||+|+..
T Consensus 208 ~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~~~~~~~D~dA~Y~~~~~iDls~leP~va~P~~pdnv~~v~e~~~ 287 (419)
T TIGR02083 208 DRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKREEKIYKADEDAKYVRVIEIDLSELEPQVAFPHLPENTKDISEAGK 287 (419)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHhhCCccchhcccCCCCCCEEEEEEEEccccceeecCCCCcccCcChhhccc
Confidence 99999999999999999999999999999987765433 899999999999999999999999999999999999862
Q ss_pred hhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCce
Q 002785 373 DWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWI 452 (881)
Q Consensus 373 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~V 452 (881)
. |. +|++||||||||||++||++||++| ||+||+++|
T Consensus 288 ~------------------------------g~-------~id~v~IGSCTngr~eDl~~AA~iL------kG~kv~~~v 324 (419)
T TIGR02083 288 E------------------------------EI-------KIDQVVIGSCTNGRLEDLRLAAEIL------KGKTVAPDV 324 (419)
T ss_pred c------------------------------cC-------ccCeEEEEcCCCCChHHHHHHHHHH------cCCCCCCCc
Confidence 0 11 3669999999999999999999999 999999999
Q ss_pred eEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCC
Q 002785 453 KTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTR 532 (881)
Q Consensus 453 k~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~ 532 (881)
|++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++.+.+. +|++ +|||+||||+||||+..+
T Consensus 325 r~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~l~-------~ge~---~vsT~NRNF~GRmG~~~~ 394 (419)
T TIGR02083 325 RCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGILA-------EGER---AISTTNRNFVGRMGHPKS 394 (419)
T ss_pred cEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEEecCCCCCccCCCCCC
Confidence 999999999999999999999999999999999999999998844433 3564 689999999999997667
Q ss_pred ceEecCHHHHHHHHHcCccc
Q 002785 533 ANYLASPPLVVAYALAGSVN 552 (881)
Q Consensus 533 ~~yLaSP~~VaA~AlaG~i~ 552 (881)
.+|||||++||||||+|+|+
T Consensus 395 ~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 395 EVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred eEEECCHHHHHHHHhCCCcC
Confidence 89999999999999999995
No 27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-110 Score=902.41 Aligned_cols=405 Identities=30% Similarity=0.452 Sum_probs=358.1
Q ss_pred HHHHHHHHhhhcCCC--C-ceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc
Q 002785 61 SKDVEKIIDWETTSP--K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (881)
Q Consensus 61 ~~~ie~il~~~~~~~--~-~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~ 137 (881)
+|+.|||++.+.... . +..+..++|++|+||.|+|.++.-| +++|. +.++|++ +.+++||++|+++.
T Consensus 3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~l-------r~~g~--kV~~p~k-~~~~~DH~vPt~~~ 72 (423)
T COG0065 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGL-------REAGR--KVRDPEK-TVATFDHNVPTPDI 72 (423)
T ss_pred ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHH-------HHhCC--cccCccc-eEEEecCCCCCccH
Confidence 789999999986543 2 2447789999999999999997533 35565 4667764 67899999999865
Q ss_pred ccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCC-CceeccccccccceeeecCCCcccc-CeeeecCCCCccc
Q 002785 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (881)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg-~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (881)
.. +.+++.. .+|.++| ++ .+|++.| +||||||.+| +|++.| +++||+||||||+
T Consensus 73 ~~--a~~~~~l---r~~~ke~-----Gi-----~~~~~~g~~GI~H~v~pE---------~G~~~PG~~Iv~gDSHT~T~ 128 (423)
T COG0065 73 KA--AEQQKEL---RENAKEF-----GI-----VNFYDVGDQGIVHQVGPE---------QGLTLPGMTIVGGDSHTCTH 128 (423)
T ss_pred HH--HHHHHHH---HHHHHHh-----CC-----eeeecCCCCcEEEEEecc---------ccccCCCcEEEecccCcccc
Confidence 43 3344444 4444322 33 3457778 9999999999 899999 5899999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChh
Q 002785 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (881)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~ 295 (881)
||||+||+|+|++|+|++|++|++|+++||+++|+++|+|++|||||||||+|++.++.+|++|+++||+|+.+++|||+
T Consensus 129 GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme 208 (423)
T COG0065 129 GAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSME 208 (423)
T ss_pred hhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeeccChhhHHHhhhcCCC-CCC----CCCCCcccEEEEEEcCCccccccCCCCCCCccccCcc
Q 002785 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRS-DDT----PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEM 370 (881)
Q Consensus 296 ~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~-~~~----~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~ 370 (881)
+|||||||++|+||++|+|+||++|++||+..... ..+ +|+||.|+++++||+|+|||+||||++|+|+++|+|+
T Consensus 209 ~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~~a~~~~~~l~sD~dA~y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~ 288 (423)
T COG0065 209 GRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWDGAVAYWKTLKSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEV 288 (423)
T ss_pred hhhhhhhhhhhhcccceeeCCcHhHHHHHHHHhccccccceecCCCCCceeEEEEEEcccCCceeeCCCCcccceecccc
Confidence 99999999999999999999999999999965432 222 8999999999999999999999999999999999997
Q ss_pred chhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCC
Q 002785 371 KADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKP 450 (881)
Q Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~ 450 (881)
.++ ++ +|+|+|||||||||++||++||++| ||+||++
T Consensus 289 ~~~--------------~i-----------------------~iDqVFIGSCTNgRieDLr~AA~Il------kgrkva~ 325 (423)
T COG0065 289 EPD--------------PI-----------------------KIDQVFIGSCTNGRIEDLRAAAEIL------KGRKVAP 325 (423)
T ss_pred cCC--------------ce-----------------------eeceEEEeccCCccHHHHHHHHHHh------ccCccCC
Confidence 742 11 4679999999999999999999999 8999999
Q ss_pred ceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCC
Q 002785 451 WIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPL 530 (881)
Q Consensus 451 ~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~ 530 (881)
+||++|+|||+.|+++++++||+++|.+|||.|..|||++|+|++.++..+ ||+ |+||+||||+||||+.
T Consensus 326 ~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL~~-------gE~---c~STSNRNF~GRqG~~ 395 (423)
T COG0065 326 GVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLGP-------GER---CASTSNRNFEGRQGSP 395 (423)
T ss_pred CceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcCCC-------CCE---EeeccCCCCCccCCCC
Confidence 999999999999999999999999999999999999999999999776555 555 5799999999999977
Q ss_pred CCceEecCHHHHHHHHHcCccc
Q 002785 531 TRANYLASPPLVVAYALAGSVN 552 (881)
Q Consensus 531 ~~~~yLaSP~~VaA~AlaG~i~ 552 (881)
.+.+||+||+++||+|++|+|+
T Consensus 396 ~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 396 GARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred CCeEEecCHHHHHHHHhhCEec
Confidence 7889999999999999999994
No 28
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=1.9e-104 Score=869.95 Aligned_cols=361 Identities=30% Similarity=0.485 Sum_probs=320.5
Q ss_pred eeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002785 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (881)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~ 165 (881)
.+++||.|+++++. |. ++|. ++.++|+. +.+++||++|+.... .+..++..++|.|.
T Consensus 1 ~~~~hd~t~p~~~~-~~-------~~g~-~~v~~p~~-~~~~~DH~vp~~~~~--~~~~~~~lr~~ak~----------- 57 (363)
T cd01582 1 HCMTHDNSWPVALK-FM-------SIGA-TKIHNPDQ-IVMTLDHDVQNKSEK--NLKKYKNIESFAKK----------- 57 (363)
T ss_pred CeeEEeCcHHHHHH-HH-------HcCC-CccCCCCC-EEEEcCCCCCCCCHH--HHHHHHHHHHHHHH-----------
Confidence 37999999998764 42 3564 45778864 788999999998643 34455555555552
Q ss_pred ccccccceeCCCCceeccccccccceeeecCCCccccC-eeeecCCCCcccCcccceeeccCHHHHHHHHcCCcEEeecC
Q 002785 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (881)
Q Consensus 166 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vP 244 (881)
+ +++|++||+|||||+++| +|+++|+ ++|||||||||+||||+||||||++|++++|+++++|+++|
T Consensus 58 --~-gi~~~~~g~GI~Hqv~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vP 125 (363)
T cd01582 58 --H-GIDFYPAGRGIGHQIMIE---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIP 125 (363)
T ss_pred --h-CCeEECCCCCEEEEeccc---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCC
Confidence 2 568899999999999999 7899996 56999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeeeccChhhHHHh
Q 002785 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (881)
Q Consensus 245 evv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~YL 324 (881)
|+|+|+|+|+|++||++|||+|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|
T Consensus 126 e~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D------- 198 (363)
T cd01582 126 PVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD------- 198 (363)
T ss_pred CEEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcccccCCCccCccccccccceeccCC
Q 002785 325 KLTGRSDDTPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHG 404 (881)
Q Consensus 325 ~~~gr~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 404 (881)
+++++||||+|||+||+|++|+|++|++|+... +.
T Consensus 199 ----------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------~~----------------- 233 (363)
T cd01582 199 ----------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------NI----------------- 233 (363)
T ss_pred ----------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------Cc-----------------
Confidence 589999999999999999999999999997520 00
Q ss_pred CcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCC-CccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEE
Q 002785 405 TPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELG-LEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHI 483 (881)
Q Consensus 405 ~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G-~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i 483 (881)
+|++||||||||||++||+.||++|.++..++| ++|+||||++|+|||++|+++|+++||+++|.++||.|
T Consensus 234 --------~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~~~a~~~Gl~~~l~~aGa~i 305 (363)
T cd01582 234 --------KINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQAAAEKNGDWQTLLEAGATP 305 (363)
T ss_pred --------eEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHHHHHHHcCcHHHHHHCCCEE
Confidence 467999999999999999999999943333222 33999999999999999999999999999999999999
Q ss_pred eccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCcc
Q 002785 484 VGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 551 (881)
Q Consensus 484 ~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i 551 (881)
.+|||++|+|+++++.++ +|+ +|||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 306 ~~pgCg~C~G~~~~~~~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~i 363 (363)
T cd01582 306 LPAGCGPCIGLGQGLLEP-------GEV---GISATNRNFKGRMGSTEALAYLASPAVVAASAISGKI 363 (363)
T ss_pred ECCCCeeccCCCCCCCCC-------CCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCccC
Confidence 999999999999887544 665 5899999999999988889999999999999999986
No 29
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=2.4e-103 Score=878.34 Aligned_cols=388 Identities=24% Similarity=0.330 Sum_probs=337.9
Q ss_pred HHHHHHhhhcCCC---CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccc
Q 002785 63 DVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 139 (881)
Q Consensus 63 ~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~ 139 (881)
++||||+++.+.. .+..|.+++|++++||.||++++..|. ++|. +++||+. +.+++||++|+....
T Consensus 1 ~~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~-------~~~~--~v~d~~~-~v~~~DH~~p~~~~~- 69 (436)
T cd01581 1 LAQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELK-------ELAC--LGFSADL-VMQSFCHTAAYPKPV- 69 (436)
T ss_pred ChHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHH-------HcCC--cccCCcc-EEEEcCCCCCCCCHH-
Confidence 3799999986633 456788999999999999999987664 3443 4577764 678999999998643
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCccccC-eeeecCCCCcccCcc
Q 002785 140 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGL 218 (881)
Q Consensus 140 ~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~gal 218 (881)
.+..++..++|.|++ +++|++||+|||||++.| +++|+ ++|||||||||+||
T Consensus 70 -~a~~~~~~r~fa~~~--------------gi~~~~~g~GI~Hqv~~e-----------~~~PG~~ivGtDSHT~t~ga- 122 (436)
T cd01581 70 -DVKTHRTLPDFISNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIG- 122 (436)
T ss_pred -HHHHHHHHHHHHHHc--------------CCcEECCCCCeeeeeehh-----------hccCCceEEeeccccCCCCc-
Confidence 445677788888842 356799999999999887 35786 56999999999986
Q ss_pred cceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHH----H--------HHHcCcceeEEEEec
Q 002785 219 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQ----M--------LRKHGVVGMFVEFYG 286 (881)
Q Consensus 219 G~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~----~--------L~~~G~~gk~vEf~G 286 (881)
||||+|++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|+. . ++.+|++||+|||.
T Consensus 123 --~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~- 199 (436)
T cd01581 123 --ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE- 199 (436)
T ss_pred --eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC-
Confidence 89999999999999999999999999999999999999999999998654 3 33345689999995
Q ss_pred CcccccChhhhhhhhccCcccCceeeeeccChhh-HHHhhhc----------CCCC--------------------CCCC
Q 002785 287 EGMSELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSD--------------------DTPQ 335 (881)
Q Consensus 287 ~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T-~~YL~~~----------gr~~--------------------~~~d 335 (881)
|+++||+++|||||||++|+|||+||||+|++| ++||+.+ ||.+ ..+|
T Consensus 200 -Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D 278 (436)
T cd01581 200 -GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLLEPD 278 (436)
T ss_pred -CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccccCC
Confidence 599999999999999999999999999999988 8999996 4421 1189
Q ss_pred CCCcccEEEEEEcCCc-cccccCCCCCCCccccCccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCce
Q 002785 336 SERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDV 414 (881)
Q Consensus 336 ~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V 414 (881)
++|.|+++++||||+| ||+||+|++|+|++|++|+... +|
T Consensus 279 ~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g~---------------------------------------~i 319 (436)
T cd01581 279 ADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAGK---------------------------------------KI 319 (436)
T ss_pred CCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcCC---------------------------------------cc
Confidence 9999999999999999 9999999999999999997631 35
Q ss_pred EEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCC
Q 002785 415 VIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGN 494 (881)
Q Consensus 415 ~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~ 494 (881)
+++||||||| +++|++.||.+| ||+|++ .||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|+
T Consensus 320 d~~~IGSCTn-r~eDl~~AA~il------kg~~~~-~vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C~G~ 391 (436)
T cd01581 320 DEVFIGSCMT-NIGHFRAAAKIL------RGKEFK-PTRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLCMGN 391 (436)
T ss_pred ceEEEecCCC-CHHHHHHHHHHH------cCCCCC-CCCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCccccccCc
Confidence 6899999999 999999999999 999975 49999999999999999999999999999999999999999998
Q ss_pred CCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCcc
Q 002785 495 SGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 551 (881)
Q Consensus 495 ~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i 551 (881)
.+.+ .+|++ +|||+||||+||||+ ...+|||||++||||||+|+|
T Consensus 392 ~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 392 QARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred CCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 5543 35776 689999999999999 668899999999999999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=4.5e-99 Score=842.03 Aligned_cols=377 Identities=39% Similarity=0.620 Sum_probs=345.5
Q ss_pred eeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002785 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (881)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~ 165 (881)
||++||+||++++.+|+.| |.+.+.+|| .++.+++||++|+.+ .+|.++|+|++|..
T Consensus 1 ~v~~hD~tgp~a~~~~~~~-------~~~~~v~~p-~~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEIL-------AALGKVADP-SQIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEecchHHHHHHHHHc-------CCCCCCCCc-ccEEEEECCCCCCCC---------------hhHHHHHHHHHHHH
Confidence 7999999999999887543 443235555 468999999999863 25667788888887
Q ss_pred ccccccceeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCcccCcccceeeccCHHHHHHHHcCCcEEeecC
Q 002785 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (881)
Q Consensus 166 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vP 244 (881)
++|. +++++||+|||||+++|++ ..| ++++|+||||||+||||++|||+|++|++++|+||++|+++|
T Consensus 58 ~~~g-i~~~~~g~Gi~H~~~~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP 126 (389)
T cd01351 58 ALQG-IAFYRPGVGIIHQIMVENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKP 126 (389)
T ss_pred HHcC-CcEECCCCCeECccccccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCC
Confidence 7774 8999999999999999943 455 689999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChhhhhhhhccCcccCceeeeeccChhhHHHh
Q 002785 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (881)
Q Consensus 245 evv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T~~YL 324 (881)
++++|+|+|+|++||++||++|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||
T Consensus 127 ~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl 206 (389)
T cd01351 127 EVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWL 206 (389)
T ss_pred cEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCC-------CC----CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcccccCCCccCcccc
Q 002785 325 KLTGRSD-------DT----PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEY 393 (881)
Q Consensus 325 ~~~gr~~-------~~----~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~ 393 (881)
+.++|++ ++ +|++|.|+++++||||+|||+||+|++|||++|++|+.+
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~--------------------- 265 (389)
T cd01351 207 EATGRPLLKNLWLAFPEELLADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG--------------------- 265 (389)
T ss_pred HhcCCchhhHHHHHHHhccCCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC---------------------
Confidence 9999884 21 899999999999999999999999999999999999762
Q ss_pred ccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcH
Q 002785 394 QSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQ 473 (881)
Q Consensus 394 ~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~ 473 (881)
.+|+++|||||||+|++|++.||.+| ||+||+++||++|+|||++|+++++++|++
T Consensus 266 ------------------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~~a~~~Gl~ 321 (389)
T cd01351 266 ------------------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYATLSREGYY 321 (389)
T ss_pred ------------------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHHHHHHcChH
Confidence 14679999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCcc
Q 002785 474 KYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 551 (881)
Q Consensus 474 ~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i 551 (881)
++|+++||.|..+||++|+|+++++..+ |++ +|+|+||||+||||+..+.+|||||++||||||+|+|
T Consensus 322 ~~l~~aG~~i~~~gC~~C~G~~~~~~~~-------g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAsAl~G~i 389 (389)
T cd01351 322 EILVDSGARILPPGCGPCMGNGARLVAD-------GEV---GVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGKI 389 (389)
T ss_pred HHHHHCCCEEeCCCCcccCCCCCCcCCC-------CcE---EEEeecCCCccccCCCCCceEECCHHHHHHHHhcCcC
Confidence 9999999999999999999999887544 554 6899999999999998889999999999999999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=2e-95 Score=854.95 Aligned_cols=395 Identities=23% Similarity=0.304 Sum_probs=344.3
Q ss_pred cccHHHHHHHHhhhcCCC---CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCc
Q 002785 58 QVKSKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQV 134 (881)
Q Consensus 58 ~~~~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~ 134 (881)
..++|++|||++.+.+.. .+..|..++|.|++||.||++++..| +++|. ..++|+. +.+++||.+|.
T Consensus 368 ~~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~lg~--~~~~~d~-v~~~~dH~~p~ 437 (835)
T PRK09238 368 GKGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KDLAC--LGFSADL-VMQSFCHTAAY 437 (835)
T ss_pred CCcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHHH-------HHcCC--cccCCCc-EEEEccCCCCC
Confidence 346899999999987632 45678999999999999999997654 45664 4556654 67899999998
Q ss_pred CccccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCccccCe-eeecCCCCc
Q 002785 135 DVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTT 213 (881)
Q Consensus 135 ~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pdt-vvGtDSHT~ 213 (881)
... .++..++..++|.+++ ++.+++||+|||||++. |+++||+ ++|||||||
T Consensus 438 ~~~--~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~H~vl~-----------~~~~Pg~vivG~DSHT~ 490 (835)
T PRK09238 438 PKP--VDVKTHHTLPDFIMNR--------------GGVSLRPGDGVIHSWLN-----------RMLLPDTVGTGGDSHTR 490 (835)
T ss_pred CCH--HHHHHHHHHHHHHHHc--------------CCcEeCCCCCeeeeccc-----------ccccCCeEEEecccccC
Confidence 754 4556777888888842 24458899999999962 5889976 599999999
Q ss_pred ccCcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHH------------HHcCcceeE
Q 002785 214 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQML------------RKHGVVGMF 281 (881)
Q Consensus 214 ~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L------------~~~G~~gk~ 281 (881)
|+|| ||||+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+ +.+|++||+
T Consensus 491 t~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~ 567 (835)
T PRK09238 491 FPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRI 567 (835)
T ss_pred CCCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeE
Confidence 9997 7899999999999999999999999999999999999999999999994333 334578999
Q ss_pred EEEecCcccccChhhhhhhhccCcccCceeeeec-cChhhHHHhhhc----------CCCC-------------------
Q 002785 282 VEFYGEGMSELSLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT----------GRSD------------------- 331 (881)
Q Consensus 282 vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp-~De~T~~YL~~~----------gr~~------------------- 331 (881)
|||. ||++||+++|+|||||++|+||++|+|| +|++|++||+.+ ||.+
T Consensus 568 lEf~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~ 645 (835)
T PRK09238 568 LEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPE 645 (835)
T ss_pred EEEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhcc
Confidence 9994 6999999999999999999999999999 788889999986 5531
Q ss_pred -CCCCCCCcccEEEEEEcCCc-cccccCCCCCCCccccCccchhhhhhhcccccCCCccCccccccccceeccCCCcccc
Q 002785 332 -DTPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQL 409 (881)
Q Consensus 332 -~~~d~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 409 (881)
..+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 646 ll~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~------------------------------------ 689 (835)
T PRK09238 646 LLEADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT------------------------------------ 689 (835)
T ss_pred cccCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC------------------------------------
Confidence 01899999999999999999 9999999999999999998631
Q ss_pred cCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcc
Q 002785 410 RHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCT 489 (881)
Q Consensus 410 ~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~ 489 (881)
+|++||||||| |+++|++.||.+| ||+++++.||++|+|||+.|+++|+++|++++|.++||.|..|||+
T Consensus 690 ---~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~pGCg 759 (835)
T PRK09238 690 ---KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEMPGCS 759 (835)
T ss_pred ---ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCcch
Confidence 35689999999 9999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCccc
Q 002785 490 TCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 552 (881)
Q Consensus 490 ~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 552 (881)
+|+||.+.+ .+|++ +|||+||||+||||+ .+.+|||||++||||||+|+|+
T Consensus 760 ~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (835)
T PRK09238 760 LCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRIP 810 (835)
T ss_pred hhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCccC
Confidence 999996553 35775 689999999999997 5678999999999999999993
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=4.1e-94 Score=841.20 Aligned_cols=393 Identities=23% Similarity=0.317 Sum_probs=342.0
Q ss_pred ccHHHHHHHHhhhcCCC---CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcC
Q 002785 59 VKSKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVD 135 (881)
Q Consensus 59 ~~~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~ 135 (881)
.++|++|||++.+.+.. .+..|..++|.|++||.||++++..|. ++|. ..++|+. +.+++||.+|..
T Consensus 370 mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~-------~l~~--~vfdpd~-v~~~~DH~~p~~ 439 (844)
T TIGR00117 370 KGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDELK-------ELAC--LGFSADL-VLQSFCHTAAYP 439 (844)
T ss_pred CchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHHH-------HhCC--ceECCCc-EEEEeCCCCCCC
Confidence 46899999999987632 456789999999999999999987654 4443 3555653 678999999887
Q ss_pred ccccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCccccCe-eeecCCCCcc
Q 002785 136 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 214 (881)
Q Consensus 136 ~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pdt-vvGtDSHT~~ 214 (881)
. ..++..++..++|.+++ ++.+++||+|||||++.| +++||+ ++||||||||
T Consensus 440 ~--~~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~Hqvl~e-----------~~~PG~vivG~DSHT~t 492 (844)
T TIGR00117 440 K--PVDVNTHHTLPDFIMNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 492 (844)
T ss_pred C--HHHHHHHHHHHHHHHHc--------------CCeEECCCCceecccchh-----------hccCCeeEEeccccccc
Confidence 4 45566788888888852 244688999999999876 468875 6999999999
Q ss_pred cCcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHH------------cCcceeEE
Q 002785 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRK------------HGVVGMFV 282 (881)
Q Consensus 215 ~galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~------------~G~~gk~v 282 (881)
+ +| ||+|+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|++||+|
T Consensus 493 ~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~l 569 (844)
T TIGR00117 493 P--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRIL 569 (844)
T ss_pred c--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEE
Confidence 7 67 999999999999999999999999999999999999999999999999654442 45689999
Q ss_pred EEecCcccccChhhhhhhhccCcccCceeeeeccChh-hHHHhhhc----------CCCCC-------------------
Q 002785 283 EFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSDD------------------- 332 (881)
Q Consensus 283 Ef~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~-T~~YL~~~----------gr~~~------------------- 332 (881)
||. |+++||+++|||||||++|+||++|+||+|++ |++||+.+ ||.+.
T Consensus 570 Ef~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~l 647 (844)
T TIGR00117 570 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 647 (844)
T ss_pred EEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhccc
Confidence 995 69999999999999999999999999999965 89999985 65321
Q ss_pred -CCCCCCcccEEEEEEcCCc-cccccCCCCCCCccccCccchhhhhhhcccccCCCccCccccccccceeccCCCccccc
Q 002785 333 -TPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLR 410 (881)
Q Consensus 333 -~~d~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 410 (881)
.+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 648 l~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~------------------------------------- 690 (844)
T TIGR00117 648 LEADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD------------------------------------- 690 (844)
T ss_pred ccCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc-------------------------------------
Confidence 1899999999999999999 9999999999999999998631
Q ss_pred CCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCccc
Q 002785 411 HGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTT 490 (881)
Q Consensus 411 ~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~ 490 (881)
+|+++|||||| |+++|++.||.+| ||+++++ ||++|+|||++|+++|+++|++++|.++||.|..|||++
T Consensus 691 --~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~pGCg~ 760 (844)
T TIGR00117 691 --KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIPGCSL 760 (844)
T ss_pred --ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCcccc
Confidence 25589999999 7999999999999 9999988 999999999999999999999999999999999999999
Q ss_pred ccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCccc
Q 002785 491 CIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 552 (881)
Q Consensus 491 CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 552 (881)
|+||++.+. +|++ +|||+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 761 C~Gn~~~v~--------~Ge~---vvSTsNRNF~GRmG~~-a~vYLaSP~~aAAsAi~G~I~ 810 (844)
T TIGR00117 761 CMGNQARVA--------DGAT---VFSTSTRNFPNRMGTG-ANVYLGSAELAAVCALLGKIP 810 (844)
T ss_pred ccCCCCcCC--------CCCE---EEeccCCCCCCCCCCC-ccEEeCCHHHHHHHHhCcccC
Confidence 999966653 4664 6789999999999984 579999999999999999993
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=8e-92 Score=819.42 Aligned_cols=394 Identities=22% Similarity=0.296 Sum_probs=339.9
Q ss_pred ccHHHHHHHHhhhcCC----CCceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCc
Q 002785 59 VKSKDVEKIIDWETTS----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQV 134 (881)
Q Consensus 59 ~~~~~ie~il~~~~~~----~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~ 134 (881)
.++|++|||++.+.+. ..+..|..++|.|++||.||++++..|..|. -++.||++ |.+++||.+|+
T Consensus 442 mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~efkel~----~~~~dpdk------v~~~fDH~ap~ 511 (938)
T PLN00094 442 KGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDELKDLA----CLGFSADL------VMQSFCHTAAY 511 (938)
T ss_pred CchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHHHHhc----ccccCccc------EEEEccCCCCC
Confidence 4689999999998753 2456789999999999999999987654321 13555554 48899999888
Q ss_pred CccccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCccccC-eeeecCCCCc
Q 002785 135 DVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTT 213 (881)
Q Consensus 135 ~~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~ 213 (881)
... .++..++..++|.+++ ++.+++||+|||||++.| +++|| +++|+|||||
T Consensus 512 p~~--~~~~~~~~lr~Fa~~~--------------Gi~~~~~G~GI~HqvL~e-----------~~lPG~vivGgDSHT~ 564 (938)
T PLN00094 512 PKP--VDVVTHHTLPDFIRNR--------------GGVSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTR 564 (938)
T ss_pred CCH--HHHHHHHHHHHHHHHc--------------CCEEECCCCceecccccc-----------cccCCeEEEeecCCCC
Confidence 754 5566777888888842 345788999999998754 77886 5899999999
Q ss_pred ccCcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHH------HHHHH------cCcceeE
Q 002785 214 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVT------QMLRK------HGVVGMF 281 (881)
Q Consensus 214 ~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~------~~L~~------~G~~gk~ 281 (881)
+..|+ ++|.|++|++.+|++|++||+|||+|+|+|+|+|++|||+|||||+|+ +.|+. .+++||+
T Consensus 565 fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~Gki 641 (938)
T PLN00094 565 FPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRI 641 (938)
T ss_pred Ccccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeEE
Confidence 87775 458899999999999999999999999999999999999999999997 44433 3468999
Q ss_pred EEEecCcccccChhhhhhhhccCcccCceeeeeccCh-hhHHHhhh----------cCCC----C---------------
Q 002785 282 VEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH-VTLQYLKL----------TGRS----D--------------- 331 (881)
Q Consensus 282 vEf~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De-~T~~YL~~----------~gr~----~--------------- 331 (881)
||| +||++||+++|||||||++|+||++|+||+|+ .|++||+. +|+. .
T Consensus 642 lEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ 719 (938)
T PLN00094 642 LEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADPE 719 (938)
T ss_pred EEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhcc
Confidence 999 77999999999999999999999999999995 68999986 3422 0
Q ss_pred -CCCCCCCcccEEEEEEcCCc-cccccCCCCCCCccccCccchhhhhhhcccccCCCccCccccccccceeccCCCcccc
Q 002785 332 -DTPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQL 409 (881)
Q Consensus 332 -~~~d~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 409 (881)
..+|++|+|+++|+||||+| ||+||+|++|||++||+|+.+ .
T Consensus 720 ll~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g--------------~---------------------- 763 (938)
T PLN00094 720 LLEADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTG--------------D---------------------- 763 (938)
T ss_pred cccCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcC--------------C----------------------
Confidence 11899999999999999999 999999999999999999763 1
Q ss_pred cCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcc
Q 002785 410 RHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCT 489 (881)
Q Consensus 410 ~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~ 489 (881)
+|++||||||| |+++|++.||.+| +|+|+++.||++|+|||+.|+++|+++|++++|.++||.|..||||
T Consensus 764 ---kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~PGCg 833 (938)
T PLN00094 764 ---KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTEMPGCS 833 (938)
T ss_pred ---ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEcCCccc
Confidence 35689999999 7999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCccc
Q 002785 490 TCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 552 (881)
Q Consensus 490 ~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 552 (881)
+|+||++.+. +|++ +|||+||||+||||+ .+.+|||||++|||+||+|+|+
T Consensus 834 ~CmG~~g~l~--------~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~It 884 (938)
T PLN00094 834 LCMGNQARVA--------EKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRLP 884 (938)
T ss_pred cccCCCCcCC--------CCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCccC
Confidence 9999966653 4665 689999999999998 5689999999999999999993
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=1.5e-65 Score=503.80 Aligned_cols=170 Identities=76% Similarity=1.160 Sum_probs=167.1
Q ss_pred ecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 002785 655 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 734 (881)
Q Consensus 655 ~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~g~ 734 (881)
++||+||||||||||+|+++||||+||.++|++++|||||||||||||||+||||+|+|++|+|++|.+|++|+|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCCccchhhcc
Q 002785 735 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 814 (881)
Q Consensus 735 ~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~ 814 (881)
.++|||+|++||++|+|+|||||+|||||||||||||+++++||+||||+||+|||++||+|||||||+|+++++++.|+
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~~~~l~ 160 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLG 160 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccCHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEe
Q 002785 815 LTGHERYTID 824 (881)
Q Consensus 815 ~~~~~~~~id 824 (881)
+++.|.|+|.
T Consensus 161 l~g~e~~~i~ 170 (171)
T cd01580 161 LTGEETYDII 170 (171)
T ss_pred CCCceeEEee
Confidence 9999988874
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=4.2e-47 Score=424.02 Aligned_cols=402 Identities=24% Similarity=0.356 Sum_probs=316.8
Q ss_pred cHHHHHHHHhhhcCCC---CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCc-C
Q 002785 60 KSKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQV-D 135 (881)
Q Consensus 60 ~~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~-~ 135 (881)
+-+.++|+..+..+.. .+.++..+..-|-.||.||+|.-.+|..| +.+|++. |++.-.+.-. .
T Consensus 372 G~TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTrdElk~l----Aclgfsa---------D~vmQSfCHTAa 438 (852)
T COG1049 372 GFTLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTRDELKDL----ACLGFSA---------DLVMQSFCHTAA 438 (852)
T ss_pred cccHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccHHHHHHH----Hhhcccc---------hhhhhhcccccc
Confidence 4578899998876532 45678889999999999999986655433 3566653 3333222111 1
Q ss_pred ccccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCccccCee-eecCCCCcc
Q 002785 136 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTM 214 (881)
Q Consensus 136 ~~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pdtv-vGtDSHT~~ 214 (881)
++...+-..+.....|..|. .++. ..||.||+|.+. +.++.|||| .|+||||.+
T Consensus 439 ypkpvdv~th~~Lp~Fi~~r-------------GgVs-lrpgdGVIHswL-----------NrmllpDtvgtGGDSHTRf 493 (852)
T COG1049 439 YPKPVDVKTHHTLPDFIMNR-------------GGVS-LRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRF 493 (852)
T ss_pred cCCccchhccccchHHHhhc-------------Ccee-cCCCCccHHHHH-----------HhccCCcceecCCcccccc
Confidence 11112222233334455542 2333 348999999986 568999985 899999999
Q ss_pred cCcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHH------HH--H----cCcceeEE
Q 002785 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQM------LR--K----HGVVGMFV 282 (881)
Q Consensus 215 ~galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~------L~--~----~G~~gk~v 282 (881)
.=|+ +|+.|+-=++.+.+++.+.+.+||+|.|+++|+++||+|-+||+.+|--. |. + +-..|+++
T Consensus 494 piGi---sFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIl 570 (852)
T COG1049 494 PIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRIL 570 (852)
T ss_pred cccc---eecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeE
Confidence 8664 57888888999999999999999999999999999999999999877532 33 1 12469999
Q ss_pred EEecCcccccChhhhhhhhccCcccCceeeeeccChhh-HHHhhhc----------CCCCCC------------------
Q 002785 283 EFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSDDT------------------ 333 (881)
Q Consensus 283 Ef~G~gv~~Ls~~~R~TIaNMa~E~GAt~g~fp~De~T-~~YL~~~----------gr~~~~------------------ 333 (881)
|. +|+.+|.+++-++++.-++|..|..+.+--++++ ++||+.. |..+..
T Consensus 571 Ei--eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~l 648 (852)
T COG1049 571 EI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPEL 648 (852)
T ss_pred Ee--ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCccc
Confidence 99 7899999999999999999999998887766665 7899764 332211
Q ss_pred --CCCCCcccEEEEEEcCCc-cccccCCCCCCCccccCccchhhhhhhcccccCCCccCccccccccceeccCCCccccc
Q 002785 334 --PQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLR 410 (881)
Q Consensus 334 --~d~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 410 (881)
+|.+|+|..+|+|||+.| ||++|+|.+||++..++|+..+
T Consensus 649 le~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~------------------------------------- 691 (852)
T COG1049 649 LEADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD------------------------------------- 691 (852)
T ss_pred cCCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC-------------------------------------
Confidence 899999999999999999 8999999999999999997631
Q ss_pred CCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCccc
Q 002785 411 HGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTT 490 (881)
Q Consensus 411 ~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~ 490 (881)
.|+-+|||||... +-+++++|++| +|.+=.-..|++|+|-++...++|.++|++.+|-++|+++-.|||+.
T Consensus 692 --~idevFiGSCMtn-iGh~ra~~klL------~~~~~~~~~rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~PGCsL 762 (852)
T COG1049 692 --KIDEVFIGSCMTN-IGHFRAAGKLL------ENAKGELPTRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMPGCSL 762 (852)
T ss_pred --ccceeeeehhhcc-chhHHHHHHHH------HhcccCCCcceEecCCccccHHHHhhcchHHHHhhccceecCCCccc
Confidence 2457899999753 57899999998 44431222789999999999999999999999999999999999999
Q ss_pred ccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCcccccCCCCCcccCCCCceee
Q 002785 491 CIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIF 570 (881)
Q Consensus 491 CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~ 570 (881)
|+||.... ++|.. .+||++|||++|+|... .+||+|.+++|.+|+-|+|
T Consensus 763 CMGNQarv--------~dgat---V~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLGki------------------- 811 (852)
T COG1049 763 CMGNQARV--------ADGAT---VFSTSTRNFPNRLGKGA-NVYLASAELAAVCAILGKI------------------- 811 (852)
T ss_pred ccccHhhh--------ccCCE---EEeeccccCCccccccc-ceeeeccHHHHHHHHHcCC-------------------
Confidence 99996553 45665 46899999999999875 5899999999999999998
Q ss_pred cccCCCChHHHHHHhh
Q 002785 571 LRDIWPSSEEVAHVVQ 586 (881)
Q Consensus 571 l~diwP~~~ei~~~~~ 586 (881)
|+.+|..+++.
T Consensus 812 -----Pt~eEY~~~v~ 822 (852)
T COG1049 812 -----PTVEEYMAYVA 822 (852)
T ss_pred -----CCHHHHHHHHH
Confidence 89999988876
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-44 Score=389.20 Aligned_cols=389 Identities=23% Similarity=0.296 Sum_probs=262.2
Q ss_pred CCCCCcccEEEEEEcCCccccccCCCCCCCccccCccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCC-
Q 002785 334 PQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHG- 412 (881)
Q Consensus 334 ~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g- 412 (881)
+|+.+.|+..++|..-.+.|.+.|..+||++.|+.--.++.....+ +| -...-...+.|+|........
T Consensus 26 ~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd--------~i--~a~~~ersL~ymGl~pnt~v~s 95 (502)
T KOG0454|consen 26 PDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTD--------KI--LARASERSLVYMGLNPNTNVDS 95 (502)
T ss_pred CcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccch--------HH--HHhhhhhceeeccCCCCcccce
Confidence 8999999999999999999999999999999999875443211100 00 001112356677765543333
Q ss_pred -ceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCcee-EEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCccc
Q 002785 413 -DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIK-TSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTT 490 (881)
Q Consensus 413 -~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk-~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~ 490 (881)
.++-+|||||||.+.+||+.||+++ +|.|+.-.+| .+++|||+.|...++.+||.++|.++||.+...||..
T Consensus 96 ~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~eagF~wreagcs~ 169 (502)
T KOG0454|consen 96 LMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEAGFYWREAGCSF 169 (502)
T ss_pred eeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHHHhhceehhhccccc
Confidence 5667999999999999999999999 9999987777 7899999999999999999999999999999999999
Q ss_pred ccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHcCcccccCCCCCcccCCCCce--
Q 002785 491 CIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKK-- 568 (881)
Q Consensus 491 CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~-- 568 (881)
|.|+........|+| -+|+|||||||+|.+.+. +|+||.+.+|.++.|+-. ++..-+-+..-.+.|
T Consensus 170 clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~-~~~~~~~k~~~~~~Ps~ 237 (502)
T KOG0454|consen 170 CLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDL-GFREFTGKDSLKVSPSP 237 (502)
T ss_pred cccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhcccccccc-ccccccccccccCCCCc
Confidence 999886656677775 389999999999999876 999999999999999863 111100000000100
Q ss_pred -eecccCCCChHHHHHHhhhccCchhhhhhcccccC-CCcccccccCCCCCccccCCCCccccCCCCCCcCCCCCCCCCc
Q 002785 569 -IFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITK-GNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHG 646 (881)
Q Consensus 569 -v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~-~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~ 646 (881)
+.|++ |+.. +.+ .+..+.. .++.-..++ ....-+.+..+.-+..++|. .
T Consensus 238 ~l~~~g--~s~s---------v~~-----~~~li~~ia~ds~t~i~--~~at~e~~s~~sSl~m~~F~-----------t 288 (502)
T KOG0454|consen 238 FLTLKG--ESPS---------VLP-----AKDLIVSIATDSSTDIP--RVATMEFSSTTSSLGMETFH-----------T 288 (502)
T ss_pred eEEeCC--CCcc---------ccc-----cccchhhhhcccccccc--ceecccCCCccccccCccee-----------e
Confidence 11111 0000 000 0000000 000000000 00000011111112222221 1
Q ss_pred ccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCc
Q 002785 647 VKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPK 726 (881)
Q Consensus 647 i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~ 726 (881)
+. -++.||||||+|||+ +||+. +.+++. .++.|..+++. |. |.
T Consensus 289 Lc-----~vv~dNiDTD~IIP~----------qfltl--i~~~~~-------------~~~~f~~~~~d-----g~--~k 331 (502)
T KOG0454|consen 289 LC-----GVVADNIDTDQIIPA----------QFLTL--IPSTGL-------------ILSCFYEVALD-----GL--PK 331 (502)
T ss_pred ee-----hhhhhhCCcCcccCh----------hhhcc--cccchh-------------hhhhhhhheec-----CC--ch
Confidence 22 245699999999999 89985 433333 46788888763 21 10
Q ss_pred eeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCC
Q 002785 727 TIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 806 (881)
Q Consensus 727 t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~ 806 (881)
.+ ...|+++. +.|+.. .|+|+|.|||||||||||+|++.+.|+++|||+||+|||++|++.+|.+|..-++
T Consensus 332 -~~----~~dFv~~v-E~~~~~---siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFfrN~~atG~l~~~~s~ 402 (502)
T KOG0454|consen 332 -SF----VTDFVLPV-EPLRKY---SIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFFRNSVATGELPPLPSE 402 (502)
T ss_pred -hh----ccceeccc-ccccee---EEEeccCCcccccccccCcchhhhcccceecchhHHHHHHHhHHhcCCccCCCce
Confidence 11 23477776 666654 7999999999999999999999999999999999999999999999998876554
Q ss_pred ccchhhccCCCCeEEEEeCCC
Q 002785 807 GEDAETHGLTGHERYTIDLPS 827 (881)
Q Consensus 807 ~~~~~~l~~~~~~~~~idl~~ 827 (881)
....+. ...++..++.+..
T Consensus 403 ~~v~de--~~~~dv~~v~l~~ 421 (502)
T KOG0454|consen 403 VRVCDE--CVTGDVYTVELSV 421 (502)
T ss_pred eeeccc--ceecceeeEEccc
Confidence 433321 1224455555543
No 37
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-38 Score=317.32 Aligned_cols=170 Identities=24% Similarity=0.405 Sum_probs=136.1
Q ss_pred ccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCc
Q 002785 647 VKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPK 726 (881)
Q Consensus 647 i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~ 726 (881)
++| ++..+-.||||||+|+|+ |||+. +++.+| .+++|.+||+..
T Consensus 7 ~~G-~~~pl~~dnIDTD~IIP~----------~fLk~--i~~~gl-------------~k~~f~~~r~~~---------- 50 (191)
T COG0066 7 ITG-RVWPLGRDNVDTDQIIPK----------RFLKT--ITRTGL-------------GKHLFEDWRYLD---------- 50 (191)
T ss_pred Eee-eEEecCCCCCccccCccH----------HHhcc--cCHhhh-------------hhcccccccccC----------
Confidence 344 444444499999999998 99996 778888 488999999631
Q ss_pred eeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCC
Q 002785 727 TIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 806 (881)
Q Consensus 727 t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~ 806 (881)
| .|+++. ++||.. +|||||+|||||||||||+|||+.+||+||||+||+||||+||+|+|+||+...+
T Consensus 51 ----P----dF~~n~-~~yq~g---~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~ 118 (191)
T COG0066 51 ----P----DFVLNV-PPYQGG---DILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAE 118 (191)
T ss_pred ----c----chhhcC-CccCCc---cEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceecCh
Confidence 2 266666 778754 8999999999999999999999999999999999999999999999999999887
Q ss_pred ccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhc----CHHHHHHHHHh
Q 002785 807 GEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG----GILQYVIRNLI 877 (881)
Q Consensus 807 ~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG----GiL~yv~~~~~ 877 (881)
++..+.+....+++++|||+.+ + |+..++.++...+ +++.++++.+| ||+.|.++++.
T Consensus 119 ~~~~~l~~~~~g~~i~VDL~~~--------~--v~~~~~~~~~f~i---~~f~~~~L~~GlD~iGlt~~~~~~i~ 180 (191)
T COG0066 119 EDVTELFEDVPGDEVTVDLETG--------E--VTNPTGGEEPFEI---DDFRREILLNGLDDIGLTLQHKKEID 180 (191)
T ss_pred HHHHHHHHhCCCCEEEEEcCCC--------e--EEeCCCCEEEccC---CHHHHHHHHcCCcccchHHHHHHHHh
Confidence 6555555444678999999873 3 3334343343332 78999999999 99999998763
No 38
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=3e-38 Score=307.09 Aligned_cols=141 Identities=35% Similarity=0.481 Sum_probs=123.3
Q ss_pred ecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 002785 655 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 734 (881)
Q Consensus 655 ~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~g~ 734 (881)
+..++||||||||||+ ||++ |||-+.+.+.+|. +..|.+. | +-+...+.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~--------------R~~l~~is~~~~~--~a~n~~~-~-~~~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKY--------------RGHLDNISNNLLI--GAINAEN-G-KANSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------cccc--------------ccCHHHHHHHHhh--hhhhhhc-c-ccccccccCCCc
Confidence 3568999999999984 6875 7899999999985 4456653 3 334567889999
Q ss_pred ccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCCccchhhcc
Q 002785 735 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 814 (881)
Q Consensus 735 ~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~ 814 (881)
.+.++++|++|++.|+++|||+|+|||||||||||||+++++||+||||+||+|||++||+|+|||||+|++.++++.+
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i- 132 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKI- 132 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887764
Q ss_pred CCCCeEEEEe
Q 002785 815 LTGHERYTID 824 (881)
Q Consensus 815 ~~~~~~~~id 824 (881)
.++++++|.
T Consensus 133 -~~gd~i~i~ 141 (149)
T cd01578 133 -HPDDKVDIL 141 (149)
T ss_pred -CCCCEEEEe
Confidence 567788874
No 39
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=2.3e-36 Score=301.82 Aligned_cols=156 Identities=29% Similarity=0.490 Sum_probs=126.8
Q ss_pred EeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 002785 653 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 732 (881)
Q Consensus 653 L~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~ 732 (881)
+.++|||||||||+|+ +||+. .|.+.|.+++|.++| |+
T Consensus 4 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 41 (163)
T PRK00439 4 VWKFGDNIDTDVIIPA----------RYLNT---------------SDPQELAKHCMEDLD-----------------PE 41 (163)
T ss_pred EEEeCCCCchhhCChH----------HHhCC---------------CCHHHHHHHHhccCC-----------------cc
Confidence 5689999999999998 89874 255678899999886 11
Q ss_pred CcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCCccchhh
Q 002785 733 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 812 (881)
Q Consensus 733 g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~ 812 (881)
|+ .+.+ .+.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+||||+++++. ++.
T Consensus 42 ----f~----~~~~---~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~~--~~~ 108 (163)
T PRK00439 42 ----FA----KKVK---PGDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDEA--VDK 108 (163)
T ss_pred ----hH----hhcC---CceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchhH--HHh
Confidence 11 2333 2479999999999999999999999999999999999999999999999999999642 444
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHH
Q 002785 813 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 876 (881)
Q Consensus 813 l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~~~ 876 (881)
+..+++++||+..+ +|.+ ..+|++|.+.. .++.+++++++||+++|++++.
T Consensus 109 --l~~gd~i~idl~~~--------~v~~-~~~g~~~~f~~--l~~~~~~il~aGGl~~~~~~~~ 159 (163)
T PRK00439 109 --IEDGDEVEVDLETG--------VITN-LTTGEEYKFKP--IPEFMLEILKAGGLIEYLKKKG 159 (163)
T ss_pred --cCCCCEEEEECCCC--------EEEe-CCCCeEEEEee--CCHHHHHHHHcCCHHHHHHHhc
Confidence 35678999998752 4433 23477888863 3789999999999999999875
No 40
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=2.7e-36 Score=301.71 Aligned_cols=157 Identities=31% Similarity=0.485 Sum_probs=126.9
Q ss_pred EeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 002785 653 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 732 (881)
Q Consensus 653 L~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~ 732 (881)
+.++|||||||||+|+ +||+.. .|.+.|.+++|.++|- +
T Consensus 4 v~~~gdnIdTD~IiPa----------~~l~~~--------------~~~~~l~~~~f~~~~p-----------------~ 42 (166)
T PRK14023 4 VWKFGDNINTDDILPG----------KYAPFM--------------VGEDRFHNYAFAHLRP-----------------E 42 (166)
T ss_pred eEEcCCCcchhhcchH----------HHhccC--------------CCHHHHHhhhccCCCh-----------------h
Confidence 4689999999999998 898741 2456788999987751 1
Q ss_pred CcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCCccchhh
Q 002785 733 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 812 (881)
Q Consensus 733 g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~ 812 (881)
.+++|+. +.|||||+|||||||||||+|+++++||+||||+||+|||++||+|+||||++.+ +.++.
T Consensus 43 --------f~~~~~~---g~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~~--~~~~~ 109 (166)
T PRK14023 43 --------FASTVRP---GDILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFESE--EVVDA 109 (166)
T ss_pred --------hHhhcCC---CCEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccCCH--HHHHH
Confidence 1245653 4799999999999999999999999999999999999999999999999998743 33444
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 002785 813 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 878 (881)
Q Consensus 813 l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~ 878 (881)
+..+++++||+..+ +++. +|++|.+.+ .++.+++++++|||++|++++-..
T Consensus 110 --l~~gd~i~vDl~~~--------~v~~---~g~~~~~~~--~~~~~~~il~aGGl~~~~~~~~~~ 160 (166)
T PRK14023 110 --LEDGDEVELDLETG--------VLTR---GGETFQLRP--PPEFLLEALKEGSILEYYRKHGRF 160 (166)
T ss_pred --hCCCCEEEEECCCC--------EEEE---CCEEEEEee--CCHHHHHHHHcCCHHHHHHHhCCC
Confidence 34578899998763 3432 467787776 588999999999999999997543
No 41
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=3.6e-36 Score=297.50 Aligned_cols=152 Identities=31% Similarity=0.529 Sum_probs=122.9
Q ss_pred EeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 002785 653 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 732 (881)
Q Consensus 653 L~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~ 732 (881)
+.++|||||||||+|+ +||+. + +.|.|.+++|.++| |+
T Consensus 3 v~~~gdnIdTD~IiP~----------~~l~~--~-------------~~~~l~~~~f~~~~-----------------p~ 40 (154)
T TIGR02087 3 VWKFGDDIDTDEIIPG----------RYLRT--T-------------DPDELASHAMEGID-----------------PE 40 (154)
T ss_pred eEEcCCCcchhhCcHH----------HHhCc--C-------------CHHHHHhhccCcCC-----------------ch
Confidence 4679999999999998 89864 2 45677899998886 11
Q ss_pred CcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCCccchhh
Q 002785 733 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 812 (881)
Q Consensus 733 g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~ 812 (881)
| +.+.+. +.|||+|+|||||||||||+|+++.+||+||||+||+|||++||+|+||||+++++ +.
T Consensus 41 ----f----~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~ 105 (154)
T TIGR02087 41 ----F----AKKVRP---GDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EG 105 (154)
T ss_pred ----h----hhcCCC---CcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HH
Confidence 1 123332 37999999999999999999999999999999999999999999999998988775 22
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 002785 813 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 875 (881)
Q Consensus 813 l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~~ 875 (881)
+..+++++||+..+ +|+ ..+|++|.+.. .++.+++++++||+++|++++
T Consensus 106 --i~~gd~i~vdl~~~--------~v~--~~~g~~~~~~~--l~~~~~~i~~aGGl~~~~~~~ 154 (154)
T TIGR02087 106 --IKDGDEVTVDLETG--------EIR--VNGNEEYKGEP--LPDFLLEILREGGLLEYLKKR 154 (154)
T ss_pred --CCCCCEEEEECCCC--------EEE--ECCCeEEEEeC--CCHHHHHHHHcCCHHHHHhcC
Confidence 34678899998752 444 35567787753 489999999999999999874
No 42
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=5.7e-36 Score=296.43 Aligned_cols=154 Identities=28% Similarity=0.487 Sum_probs=122.2
Q ss_pred EeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 002785 653 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 732 (881)
Q Consensus 653 L~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~ 732 (881)
+.++|||||||||+|+ +||.. .|.+.|.+++|.++| |+
T Consensus 3 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 40 (156)
T TIGR02084 3 VHKYGDNVDTDVIIPA----------RYLNT---------------SDPKELAKHCMEDLD-----------------KD 40 (156)
T ss_pred eEEcCCCccHhhccHH----------HHcCc---------------CCHHHHHhhhhccCC-----------------hh
Confidence 4689999999999998 89863 356778899998886 11
Q ss_pred CcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCCccchhh
Q 002785 733 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 812 (881)
Q Consensus 733 g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~ 812 (881)
.+++++. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|| |+... ...++.
T Consensus 41 --------f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~~~-~~~~~~ 107 (156)
T TIGR02084 41 --------FVKKVKE---GDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIVES-EEAVDE 107 (156)
T ss_pred --------HHhhcCC---CCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-CeecC-HHHHHH
Confidence 1244542 4799999999999999999999999999999999999999999999997 55433 334444
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHH
Q 002785 813 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIR 874 (881)
Q Consensus 813 l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~ 874 (881)
+ ..+++++||+..+ +|+. ..+|++|.+.. .++.+++++++|||++|+++
T Consensus 108 l--~~gd~i~idl~~~--------~v~~-~~~g~~~~~~~--~~~~~~~il~~GGl~~~~~~ 156 (156)
T TIGR02084 108 I--EEGDEVEVDLEKG--------IIKN-LTKGKEYKATP--FPEFLQKIMKAGGLLNYVKK 156 (156)
T ss_pred h--CCCCEEEEECCCC--------EEEE-ecCCEEEEeec--CCHHHHHHHHcCCHHHHhhC
Confidence 3 4678999998752 3321 24568888883 37899999999999999874
No 43
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=1.8e-34 Score=301.31 Aligned_cols=167 Identities=28% Similarity=0.415 Sum_probs=125.0
Q ss_pred cccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCc---hhhhccccccchh--hhhhhcC
Q 002785 646 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGN---DEIMARGTFANIR--LVNKLLN 720 (881)
Q Consensus 646 ~i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN---~evm~rg~F~n~r--~~n~l~~ 720 (881)
.+++ |+ .++|||||||||+|+ +||+.. ++| .+.|.+++|.+++ +..++
T Consensus 68 ~~~G-rv-~k~gDNIdTD~IiPa----------~~l~~~-------------~sn~~~~~~l~~~~F~~l~~~~~~r~-- 120 (246)
T PLN00072 68 TFHG-LC-FVVGDNIDTDQIIPA----------EYLTLV-------------PSKPDEYEKLGSYALIGLPAFYKTRF-- 120 (246)
T ss_pred eEEE-eE-EEeCCCcchhhcccH----------HHhccc-------------cccCCCHHHHHHhhhccCCcchhhcc--
Confidence 4554 65 689999999999998 888752 222 5678888998774 11110
Q ss_pred CCCCCceeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCc-c
Q 002785 721 GEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG-I 799 (881)
Q Consensus 721 g~~g~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~G-i 799 (881)
...|+. + .+ ..|||+|+|||||||||||+|+|+++||+||||+||+|||++||+|+| +
T Consensus 121 ---------v~~Gd~----------~-~~-~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN~GLl 179 (246)
T PLN00072 121 ---------VEPGEM----------K-TK-YSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEV 179 (246)
T ss_pred ---------cCCCCC----------C-CC-ceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHhCCcc
Confidence 111111 0 11 379999999999999999999999999999999999999999999999 7
Q ss_pred ceeecCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 002785 800 IPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 875 (881)
Q Consensus 800 lpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~~ 875 (881)
||++.+ .+.++. +..+++++||+.. ++|+. ..+|++|.+.+. +.+++++++|||++|++++
T Consensus 180 lpi~~~-~~~~e~--i~~Gd~i~VDl~~--------~~v~n-~t~g~~~~~~p~---~~~~~Il~aGGl~~y~r~~ 240 (246)
T PLN00072 180 YPLESE-VRICEE--CKTGDVVTVELGN--------SVLIN-HTTGKEYKLKPI---GDAGPVIDAGGIFAYARKT 240 (246)
T ss_pred eeeccc-HHHHHh--cCCCCEEEEECCC--------CEEEE-CCCCeEEEecCC---HHHHHHHHcCCHHHHHHhh
Confidence 888743 233343 3467889999865 23332 356788988862 3499999999999999986
No 44
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=100.00 E-value=2.4e-34 Score=292.23 Aligned_cols=166 Identities=26% Similarity=0.396 Sum_probs=126.8
Q ss_pred ccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCc
Q 002785 647 VKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPK 726 (881)
Q Consensus 647 i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~ 726 (881)
+++ |+..+.|||||||+|+|+ |||+. ++++ .+.+++|.+||+.+. .|. .+.
T Consensus 7 ~~G-~~~~l~~dnIDTD~IiP~----------rfl~~--~~~~-------------~l~~~~f~~~R~~~~--~g~-~~~ 57 (188)
T TIGR00171 7 HTG-LVAPLDAANVDTDAIIPK----------QFLKR--ITRT-------------GFGKHLFFDWRFLDA--NGK-EPN 57 (188)
T ss_pred EEE-EEEECCCCcCcHhhhhHH----------HHhCc--CCHH-------------HHHHhcccccccccc--ccC-CCC
Confidence 344 666666999999999998 99975 3444 457899999997421 110 111
Q ss_pred eeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCC
Q 002785 727 TIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 806 (881)
Q Consensus 727 t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~ 806 (881)
| .|++|+ +.|+. ..|||||+|||||||||||+||++.+||+||||+||+|||++||+|+|+|||++++
T Consensus 58 ----p----~F~ln~-~~~~~---~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~ 125 (188)
T TIGR00171 58 ----P----DFVLNQ-PQYQG---ASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSY 125 (188)
T ss_pred ----c----chhhcc-cccCC---CcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCccccCH
Confidence 2 266776 67765 37999999999999999999999999999999999999999999999999999987
Q ss_pred ccchhhcc--CCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhc
Q 002785 807 GEDAETHG--LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 866 (881)
Q Consensus 807 ~~~~~~l~--~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 866 (881)
.+..+.+. ...+++++||+..+ +|+. .+|+++.+.+ ++..++.+-.|
T Consensus 126 ~~i~~~~~~~~~~g~~i~vDl~~~--------~v~~--~~~~~~~f~i---~~~~r~~ll~G 174 (188)
T TIGR00171 126 DEVKELFGQVENQGLQMTVDLENQ--------LIHD--SEGKVYSFEI---DPFRKHCLING 174 (188)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCC--------EEEe--CCCeEEEEEe---CHHHHHHHHcC
Confidence 55554421 25678999999863 4443 4566677774 67778877777
No 45
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.98 E-value=1.3e-33 Score=289.71 Aligned_cols=163 Identities=27% Similarity=0.441 Sum_probs=126.4
Q ss_pred ccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCc
Q 002785 647 VKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPK 726 (881)
Q Consensus 647 i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~ 726 (881)
+++ +++.+.|||||||+|+|+ +||+. +++ +.|.+++|.++|+... |...|
T Consensus 7 i~G-~~~~l~~dnIDTD~IiPa----------~fl~~--~~~-------------~~l~~~~f~~~r~~~~---~~~~p- 56 (200)
T PRK01641 7 HTG-LAVPLDRANVDTDQIIPK----------QFLKR--ITR-------------TGFGKGLFDDWRYLDD---GQPNP- 56 (200)
T ss_pred EEE-EEEEcCCCCCChhhcchH----------hHcCc--CCH-------------HHHHHhhhcccccccc---CCCCC-
Confidence 444 777777999999999998 89874 333 4467999999997421 21111
Q ss_pred eeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCC
Q 002785 727 TIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 806 (881)
Q Consensus 727 t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~ 806 (881)
.|++|+ ++|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|||||++++
T Consensus 57 ---------~F~ln~-~~~~~---~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~ 123 (200)
T PRK01641 57 ---------DFVLNQ-PRYQG---ASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPE 123 (200)
T ss_pred ---------Cccccc-cccCC---CeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCH
Confidence 256665 67764 47999999999999999999999999999999999999999999999999999986
Q ss_pred ccchhhcc-C--CCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhc
Q 002785 807 GEDAETHG-L--TGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 866 (881)
Q Consensus 807 ~~~~~~l~-~--~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 866 (881)
.+..+... + ..+++++||+..+ +|+. . |+++.+.+ ++..++++.+|
T Consensus 124 ~~i~~l~~~~~~~~g~~i~vDl~~~--------~v~~--~-~~~~~f~i---~~~~~~~l~~G 172 (200)
T PRK01641 124 EDVDELFKLVEANPGAELTVDLEAQ--------TVTA--P-DKTFPFEI---DPFRRHCLLNG 172 (200)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCC--------EEec--C-CeEEEEEc---CHHHHHHHHcC
Confidence 54444332 2 4678899998863 3332 2 56777773 68899999998
No 46
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=99.98 E-value=3.7e-34 Score=275.60 Aligned_cols=128 Identities=43% Similarity=0.559 Sum_probs=112.8
Q ss_pred hHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCCeEEEeCC
Q 002785 679 KYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGA 758 (881)
Q Consensus 679 ~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~ 758 (881)
+||+.+|+...++++|+.+|+||++|.+++|.+.++.|.+..+...+.+.+.|+++.+.+++.+++|+.++.+.||++|+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 57777788888888888888888888999999999999998888888899999999999999999999888777777789
Q ss_pred ccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCC
Q 002785 759 EYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 806 (881)
Q Consensus 759 nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~ 806 (881)
|||||||||||+|+++++||+||||+||+|||++||+|||||||+|++
T Consensus 83 nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp SBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred cccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 999999999999999999999999999999999999999999999975
No 47
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.97 E-value=1.5e-32 Score=261.75 Aligned_cols=121 Identities=45% Similarity=0.711 Sum_probs=94.8
Q ss_pred ecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 002785 655 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 734 (881)
Q Consensus 655 ~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~g~ 734 (881)
++|||||||||+|++. +||.+ |++.+.|.+++|.+.+ |+
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~-----------------p~-- 39 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVD-----------------PT-- 39 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCC-----------------ch--
Confidence 5899999999999953 35553 3566778888887643 11
Q ss_pred ccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCCccchhhcc
Q 002785 735 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 814 (881)
Q Consensus 735 ~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~ 814 (881)
.+.+++.. ...|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+|||++++.+.++.
T Consensus 40 ------f~~~~~~~-~~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~-- 110 (121)
T cd01579 40 ------FAERAKAA-GPGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDR-- 110 (121)
T ss_pred ------HHhhcccC-CCeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhh--
Confidence 12333432 246999999999999999999999999999999999999999999999999999987655554
Q ss_pred CCCCeEEEEeC
Q 002785 815 LTGHERYTIDL 825 (881)
Q Consensus 815 ~~~~~~~~idl 825 (881)
+..+++++||+
T Consensus 111 ~~~gd~i~id~ 121 (121)
T cd01579 111 FEQGDQLELPL 121 (121)
T ss_pred cCCCCEEEcCC
Confidence 34566777664
No 48
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.95 E-value=1.3e-29 Score=229.74 Aligned_cols=73 Identities=33% Similarity=0.522 Sum_probs=63.4
Q ss_pred eEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCCccchhhccCCCCeEEEEeC
Q 002785 752 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDL 825 (881)
Q Consensus 752 ~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~idl 825 (881)
.|||+|+|||||||||||+|+++++||++|||+||+|||++||+|+|+||+++.++..++ .....+++++||+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vdl 91 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVDL 91 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEeC
Confidence 599999999999999999999999999999999999999999999999999988766554 2234556666663
No 49
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.95 E-value=2.9e-28 Score=219.52 Aligned_cols=71 Identities=44% Similarity=0.579 Sum_probs=62.9
Q ss_pred eEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCCccchhhccCCCCeEEEEe
Q 002785 752 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID 824 (881)
Q Consensus 752 ~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~id 824 (881)
.|||+|+|||||||||||+|+++++|+++|||+||+|||++||+|+|+||++|++...++.+ ..+++++||
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~i--~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKL--HTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhhc--CCCCEEEeC
Confidence 59999999999999999999999999999999999999999999999999999876666543 445666654
No 50
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.94 E-value=6.1e-27 Score=277.30 Aligned_cols=164 Identities=22% Similarity=0.284 Sum_probs=121.8
Q ss_pred cccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCC
Q 002785 646 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 725 (881)
Q Consensus 646 ~i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~ 725 (881)
.|++ +| .++|||||||||||| +|+.. |.|.+...+..|.+.+
T Consensus 165 ~i~g-~V-~KvgdnInTD~I~Pa----------~~~~~--------------Rsdipl~a~~~~e~~~------------ 206 (835)
T PRK09238 165 KITV-TV-FKVTGETNTDDLSPA----------PDAWS--------------RPDIPLHALAMLKNRR------------ 206 (835)
T ss_pred ccEE-EE-EEeCCCCchhccCCc----------ccccc--------------CCCHHHHHHHhccCCC------------
Confidence 4554 55 899999999999999 45532 4566666666665543
Q ss_pred ceeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccc-------------cccCeeEEEecchhHHHhh
Q 002785 726 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRS 792 (881)
Q Consensus 726 ~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SF~rIf~~ 792 (881)
|+ ..+++++++..| ..|+|+|+|||||||||||+|++ +..| ++|||+||+||||+
T Consensus 207 -----p~-----f~~~i~~~~~~G-~~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g-~~VIa~SfArIFf~ 274 (835)
T PRK09238 207 -----PG-----PIKQIEELKKKG-HPVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAG-GVVLGGKIAPIFFN 274 (835)
T ss_pred -----Cc-----HHHHHHhhccCC-CEEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceE-EEEEeCchHHHHHh
Confidence 11 223334444344 35999999999999999999997 4445 99999999999999
Q ss_pred hcccCccceeecCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCE-EEEEEecCCCHHHHHHHHhcCHHHH
Q 002785 793 NLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGK-SFTCVIRFDTEVELAYFDHGGILQY 871 (881)
Q Consensus 793 N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~-~f~~~~~~~t~~e~~~~~aGGiL~y 871 (881)
||+|+|+|||+++ .+. +..+++++||+.++ +|+ ..+|+ .+.+.+ .++.+++++++||++||
T Consensus 275 Nain~GlLpIe~d----~~~--i~~Gd~i~Id~~~g--------~I~--~~~g~~~~~f~l--~p~~~~div~AGGli~~ 336 (835)
T PRK09238 275 TMEDSGALPIELD----VSK--LNMGDVIDIYPYKG--------KIR--NETGEVIATFKL--KTDVLLDEVRAGGRIPL 336 (835)
T ss_pred hhHHcCCceEEeC----HHH--cCCCCEEEEECCCC--------EEE--eCCCeEEEEEec--CcHHHHHHHHcCChHHH
Confidence 9999999999996 233 34678899998763 333 23443 355655 57899999999999999
Q ss_pred HHHHHh
Q 002785 872 VIRNLI 877 (881)
Q Consensus 872 v~~~~~ 877 (881)
++.|-+
T Consensus 337 i~gr~l 342 (835)
T PRK09238 337 IIGRGL 342 (835)
T ss_pred HHhccc
Confidence 998754
No 51
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.93 E-value=1.7e-27 Score=226.39 Aligned_cols=100 Identities=26% Similarity=0.398 Sum_probs=80.2
Q ss_pred cCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcc
Q 002785 656 FGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEK 735 (881)
Q Consensus 656 ~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g~~t~~~p~g~~ 735 (881)
.-|||+||||+|+ +||.... ...|.|.+..|.+.+ |+
T Consensus 2 ~~DnInTD~IiP~----------~y~~~~~-------------~~~e~la~~~~e~~d-----------------p~--- 38 (129)
T cd01674 2 DADNLNTDGIYPG----------KYTYQDD-------------ITPEKMAEVCMENYD-----------------SE--- 38 (129)
T ss_pred CccccchhccCcc----------cccccCC-------------CCHHHHHHhhcccCC-----------------ch---
Confidence 3589999999998 6773111 134667777777654 11
Q ss_pred cccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCC
Q 002785 736 LSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 806 (881)
Q Consensus 736 ~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~ 806 (881)
.+.+.+ .+.|||+|+|||||||||||+|+++.+||++|||+||+|||++||+|+|+|||++++
T Consensus 39 -----f~~~v~---~gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 39 -----FSTKTK---QGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred -----hhhcCC---CCCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 112323 247999999999999999999999999999999999999999999999999999975
No 52
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.91 E-value=1.1e-25 Score=246.18 Aligned_cols=417 Identities=14% Similarity=0.058 Sum_probs=299.7
Q ss_pred cHHHHHHHHhhhcCCC---CceeEeeccceeeeccCCcHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCc
Q 002785 60 KSKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDV 136 (881)
Q Consensus 60 ~~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~ 136 (881)
.+++.++|+++..+.. .+-++...+|-.+.||..+.-+..-+ ..+++.....|+|++ +...+||..-+..
T Consensus 66 p~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~r------iedlr~aAaVv~g~K-ia~n~k~am~vpg 138 (502)
T KOG0454|consen 66 PMTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIR------IEDLREAAAVVDGEK-IAVNPKHAMFVPG 138 (502)
T ss_pred CcccchHHHHhhhhhceeeccCCCCcccceeeecceecccccccc------HHHHhhhhhccccce-eEecccceEEecC
Confidence 5888899998875432 23457778888899998877654322 123333444555553 5678999765543
Q ss_pred cccHHHHHhhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCccc
Q 002785 137 ARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (881)
Q Consensus 137 ~~~~~a~~~n~~~e~~rn~ery~fl~~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (881)
.+ .-....+.+++.|-.-.-.| .|-. +--+|..-+--.|.||.-.. | .+.-.| ....|+||||++.
T Consensus 139 sg--lvkk~aeaegld~if~eagF-~wre-agcs~clgmnpd~l~~yerc---a------stsnRnfEgrqGa~srThlm 205 (502)
T KOG0454|consen 139 SG--LVKKVAEAEGLDRIFNEAGF-YWRE-AGCSFCLGMNPDGLCHYERC---A------STSNRNFEGRQGADSRTHLM 205 (502)
T ss_pred ch--hhHhHHHHHhhHHHHHhhce-ehhh-ccccccccCCchhccHHHHh---h------hccCCCccccccccccchhh
Confidence 32 11222233344443222122 3432 22234444434799996321 1 456677 5689999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCcEEeecCeEEEEEEEcccCCCCChhhHHHHHHHHHHHcCcceeEEEEecCcccccChh
Q 002785 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (881)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevv~V~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~Ls~~ 295 (881)
++.+.++.|+|+.++..........+++|.++.++++|+.+.-..++|+++.++...-..+...+..||-+--. +|+++
T Consensus 206 a~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~ 284 (502)
T KOG0454|consen 206 AASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGME 284 (502)
T ss_pred hhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCc
Confidence 99999999999999999999888999999999999999999999999999999888888888899999976555 79999
Q ss_pred hhhhhhccCcccCceeeeeccChhhHHHhhhcCCCCCC---CCC-CCcccEEEEEEcCCccccccCCCCCCCccccCccc
Q 002785 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDT---PQS-ERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMK 371 (881)
Q Consensus 296 ~R~TIaNMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~---~d~-~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~v~e~~ 371 (881)
.|+|||||..|-+-|-+|+|+|-.|+-|-....+.... .|. .+.|...+.+|.+..+|..+.|+. ||.===++-
T Consensus 285 ~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f~~~~~dg~~k~~~~dFv~~vE~~~~~siii~~-DNFGCGSSR- 362 (502)
T KOG0454|consen 285 TFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCFYEVALDGLPKSFVTDFVLPVEPLRKYSIIIGG-DNFGCGSSR- 362 (502)
T ss_pred ceeeeehhhhhhCCcCcccChhhhcccccchhhhhhhhhheecCCchhhccceeccccccceeEEEecc-CCccccccc-
Confidence 99999999999999999999998888776665555433 343 477899999999999999998887 654211110
Q ss_pred hhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCc
Q 002785 372 ADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPW 451 (881)
Q Consensus 372 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~ 451 (881)
.|-+|...++|+|+-..-++.|+ .+|+-++.|++++
T Consensus 363 --------------------------------------EHAPv~L~~~GakaivA~Sya~I----FfrN~~atG~l~~-- 398 (502)
T KOG0454|consen 363 --------------------------------------EHAPVCLGAAGAKAIVAPSYARI----FFRNSVATGELPP-- 398 (502)
T ss_pred --------------------------------------ccCcchhhhcccceecchhHHHH----HHHhHHhcCCccC--
Confidence 13356678999999999888665 4677788899887
Q ss_pred eeEEEecCcHHHHH-----HHHHc---CcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCC
Q 002785 452 IKTSLAPGSGVVTK-----YLQNS---GLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNF 523 (881)
Q Consensus 452 Vk~~v~PgS~~V~~-----~l~~~---Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF 523 (881)
+-..+.|..+-++. .+..+ =++.+++..+..=+.|-|..|.++.-+ .+....++ +. .|+|+||||
T Consensus 399 ~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad---~I~~~~~k-e~---mIss~~a~r 471 (502)
T KOG0454|consen 399 LPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDAD---GIFAYARK-EG---MISSTEANR 471 (502)
T ss_pred CCceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCch---HHHHhhcc-cc---ccchhhhcC
Confidence 33445555433322 12121 255667777776678999999997521 22222222 22 589999999
Q ss_pred CCCCCCCCCceEecCHHHHHHHHHcCc
Q 002785 524 EGRVHPLTRANYLASPPLVVAYALAGS 550 (881)
Q Consensus 524 ~GR~g~~~~~~yLaSP~~VaA~AlaG~ 550 (881)
++|||....++|||||.+|+|+++.|+
T Consensus 472 ~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 472 PERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred ccccCccccceEEccccchhhhhhcCC
Confidence 999999999999999999999999998
No 53
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.91 E-value=2.1e-25 Score=214.40 Aligned_cols=67 Identities=22% Similarity=0.270 Sum_probs=57.3
Q ss_pred eEEEeCCccCCCCccchhccccc------------ccCeeEEEecchhHHHhhhcccCccceeecCCccchhhccCCCCe
Q 002785 752 TVILAGAEYGSGSSRDWAAKGPM------------LLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHE 819 (881)
Q Consensus 752 ~iivaG~nfG~GSSRE~Aa~a~~------------~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~~~~~~ 819 (881)
.|+|+|+|||||||||||+++++ .+|++||||+||+|||++||+|+|+||++++.. . +..++
T Consensus 52 ~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~~~----~--~~~GD 125 (131)
T cd01576 52 PVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLDVS----V--LDMGD 125 (131)
T ss_pred eEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeCHH----H--cCCCC
Confidence 49999999999999999999998 779999999999999999999999999998621 1 23455
Q ss_pred EEEEe
Q 002785 820 RYTID 824 (881)
Q Consensus 820 ~~~id 824 (881)
++++|
T Consensus 126 ~l~vD 130 (131)
T cd01576 126 ILNID 130 (131)
T ss_pred EEEeC
Confidence 55554
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.89 E-value=1.3e-23 Score=248.62 Aligned_cols=165 Identities=19% Similarity=0.219 Sum_probs=120.7
Q ss_pred CcccCceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhhccccccchhhhhhhcCCCCC
Q 002785 645 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG 724 (881)
Q Consensus 645 ~~i~~arvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrRgN~evm~rg~F~n~r~~n~l~~g~~g 724 (881)
..|++ + +.++||+|+||+|||+ +|+..+ .+.+.+.+..|.+.+
T Consensus 165 ~~i~g-~-V~k~gddinTD~i~Pa----------~~a~sr--------------~D~~~~a~~m~~~~~----------- 207 (844)
T TIGR00117 165 EKITV-T-VFKVTGETNTDDLSPA----------PDAWTR--------------PDIPLHALAMLKNAR----------- 207 (844)
T ss_pred hheEE-E-EEEeCCCCchhccCCh----------hhhhcC--------------CCHHHHHHHHhhcCC-----------
Confidence 34665 4 5699999999999998 787652 233444444444332
Q ss_pred CceeecCCCcccccchHHHHHHhcCCCeEEEeCCccCCCCccchhcccc-------------cccCeeEEEecchhHHHh
Q 002785 725 PKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHR 791 (881)
Q Consensus 725 ~~t~~~p~g~~~~v~~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SF~rIf~ 791 (881)
|+ ..+.-...++.|. .|+|+|+|||||||||||+.++ +.+| .+|||+||+||||
T Consensus 208 ------p~-----~~~~i~~~~~~Gd-~iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArIFf 274 (844)
T TIGR00117 208 ------EG-----IEPQIEALKQKGF-PVAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPIFF 274 (844)
T ss_pred ------cc-----HHHHHHHhccCCC-eEEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHhhh
Confidence 11 0111123344443 2999999999999999999999 9999 9999999999999
Q ss_pred hhcccCccceeecCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCE-EEEEEecCCCHHHHHHHHhcCHHH
Q 002785 792 SNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGK-SFTCVIRFDTEVELAYFDHGGILQ 870 (881)
Q Consensus 792 ~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~-~f~~~~~~~t~~e~~~~~aGGiL~ 870 (881)
||++|.|+|||+++ .+. +..|++++||+.++ +|+. .+|+ .+++.+ .++..++++++||++|
T Consensus 275 rnain~Gl~~ie~~----~~~--l~~GD~i~Id~~~G--------~I~n--~~g~~~~~f~~--~p~~l~div~AGGli~ 336 (844)
T TIGR00117 275 NTMEDSGALPIEVD----VSN--LNMGDVIDIYPYKG--------EITN--HEGELLATFEL--KPETLLDEVRAGGRIP 336 (844)
T ss_pred cchhhcCCCeEEeC----Hhh--cCCCCEEEEECCCC--------EEEe--CCCCEEEEeee--CCHHHHHHHHcCCchh
Confidence 99999999999986 122 45688999998763 3332 3453 377765 4788999999999999
Q ss_pred HHHHHHh
Q 002785 871 YVIRNLI 877 (881)
Q Consensus 871 yv~~~~~ 877 (881)
|+.-|-+
T Consensus 337 ~i~gr~l 343 (844)
T TIGR00117 337 LIIGRGL 343 (844)
T ss_pred hhhcccc
Confidence 9987654
No 55
>PRK14812 hypothetical protein; Provisional
Probab=99.80 E-value=4.3e-20 Score=175.48 Aligned_cols=91 Identities=27% Similarity=0.305 Sum_probs=71.0
Q ss_pred CCCccchhcccccccCeeEEEecchhHHHhhhcccCccceeecCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEE
Q 002785 762 SGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV 841 (881)
Q Consensus 762 ~GSSRE~Aa~a~~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~ 841 (881)
||||||||+||++.+||+||||+||++||++||+|+||||+.+++........+..+++++||+.++ +|+
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~~~~~l~~~~~g~~i~vDL~~~--------~v~-- 71 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREVREKLAQLKPTDQVTVDLEQQ--------KII-- 71 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHHHHHHHhccCCCCEEEEEcCCC--------EEE--
Confidence 9999999999999999999999999999999999999999998876544444456788999999863 333
Q ss_pred cCCCEEEEEEecCCCHHHHHHHHhc
Q 002785 842 TDSGKSFTCVIRFDTEVELAYFDHG 866 (881)
Q Consensus 842 ~~~G~~f~~~~~~~t~~e~~~~~aG 866 (881)
.. +++|.+.+ .+..++.+-+|
T Consensus 72 ~~-~~~~~f~i---~~~~~~~Ll~G 92 (119)
T PRK14812 72 SP-VEEFTFEI---DSEWKHKLLNS 92 (119)
T ss_pred cC-CeEEEEEE---CHHHHHHHHhC
Confidence 22 25677766 34444445455
No 56
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.77 E-value=1.3e-18 Score=206.26 Aligned_cols=118 Identities=21% Similarity=0.254 Sum_probs=97.2
Q ss_pred HHHHHHhcCCCeEEEeCCccCCCCccchhcccc-------------cccCeeEEEecchhHHHhhhcccCccceeecCCc
Q 002785 741 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPG 807 (881)
Q Consensus 741 ~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SF~rIf~~N~i~~Gilpl~~~~~ 807 (881)
.-...|+.|.| |+|+|+|||||||||||+.++ +..|+.| ||+||+||||||++|.|+|||+++
T Consensus 284 ~i~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~-- 359 (938)
T PLN00094 284 QIEELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD-- 359 (938)
T ss_pred HHHHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEecc--
Confidence 34677888876 899999999999999999999 9999999 999999999999999999999986
Q ss_pred cchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEE-EEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002785 808 EDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSF-TCVIRFDTEVELAYFDHGGILQYVIRNLI 877 (881)
Q Consensus 808 ~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~~f-~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 877 (881)
.+. +..|++++||+.++ +|+. ..+|+++ .+.+ .++..++++++||++||++-|-+
T Consensus 360 --v~~--i~~GD~I~id~~~G--------~I~n-~~~g~~~~~f~~--~p~~l~d~vrAGGli~~i~gr~l 415 (938)
T PLN00094 360 --VKN--LNMGDVIDIYPYEG--------VVKR-HGTDEVITTFSL--KTPVLLDEVRAGGRIPLIIGRGL 415 (938)
T ss_pred --Hhh--cCCCCEEEEEcCCC--------EEEe-cCCCeEEEeccC--CChHHHHHHHcCCcHhhhhcccc
Confidence 122 35678899997752 3322 3457777 5554 47889999999999999998754
No 57
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.28 E-value=1.2e-06 Score=89.47 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=72.0
Q ss_pred hHHHHHHhcCCCeEEEeCCccCCCCccchhcccccccC------------eeEEEecchhHHHhhhcccCccceeecCCc
Q 002785 740 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLG------------VKAVIAKSFERIHRSNLVGMGIIPLCFKPG 807 (881)
Q Consensus 740 ~~a~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lG------------v~aVIA~SF~rIf~~N~i~~Gilpl~~~~~ 807 (881)
++-+..|+.|.|.+.| |.--|+||||--|.-...... .-.||...++.||++-+-.-|-||++++-.
T Consensus 44 ~~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsGaLPIe~dv~ 122 (204)
T PF06434_consen 44 EQIEELKEKGHPLAYV-GDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGALPIECDVS 122 (204)
T ss_dssp HHHHHHHTTSS-EEEE-EEEEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE---T
T ss_pred HHHHHHHHcCCcEEEe-cCccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEeccccccCCceEEEecc
Confidence 3446778888875555 888999999998876653322 246889999999999999999999997522
Q ss_pred cchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCE---EEEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002785 808 EDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGK---SFTCVIRFDTEVELAYFDHGGILQYVIRNLI 877 (881)
Q Consensus 808 ~~~~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~---~f~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 877 (881)
.+..|+.++|+..++ +|. ..+|+ +|.++ ++..++-+||||-++.+.-|-+
T Consensus 123 ------~l~~Gdvi~I~p~~g--------ki~--~~~gev~~~f~l~----p~~l~DevrAGGri~LiiGR~L 175 (204)
T PF06434_consen 123 ------SLNTGDVITIYPYEG--------KIY--KENGEVISTFELK----PQTLLDEVRAGGRIPLIIGRGL 175 (204)
T ss_dssp ------T--TT-EEEEETTTT--------EEE--ETT--EEEE---S-----TCHHHHHHHTSHHHHHHHHHH
T ss_pred ------ccCCCcEEEEecCCc--------EEE--CCCCCEEEEeecC----chhHHHHHhcCCcEEEEechHH
Confidence 245578888886542 222 34442 23333 4556789999999999987754
No 58
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.52 E-value=0.036 Score=63.83 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=59.4
Q ss_pred ceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002785 413 DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 488 (881)
Q Consensus 413 ~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC 488 (881)
+|+.++|| |=--|.+.++..|.+| +|+|+++.++++|. -|+.|+..+.+.|+.+.|+++|..|+.-.|
T Consensus 289 ~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 289 KVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 45667775 8888899999999999 99999999988776 578899999999999999999999997665
No 59
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=95.22 E-value=0.037 Score=65.26 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=73.8
Q ss_pred HHHHhcCCCeEEEeCCccCCCCccchhcccccccCe------------eEEEecchhHHHhhhcccCccceeecCCccch
Q 002785 743 MRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV------------KAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 810 (881)
Q Consensus 743 ~~y~~~g~~~iivaG~nfG~GSSRE~Aa~a~~~lGv------------~aVIA~SF~rIf~~N~i~~Gilpl~~~~~~~~ 810 (881)
+..++.|.+ ++-.|.--|+||||-.|.-.....+- -.|+..-.+.||++-+-.-|-||++++-.
T Consensus 215 ~~lk~Kg~~-vayvgdvvGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~dv~--- 290 (852)
T COG1049 215 EALKQKGHP-VAYVGDVVGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVDVS--- 290 (852)
T ss_pred HHHhhcCce-EEEeccccccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEeeec---
Confidence 567888876 55556679999999988754332221 34555566889998888889999886421
Q ss_pred hhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 002785 811 ETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 875 (881)
Q Consensus 811 ~~l~~~~~~~~~idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~~ 875 (881)
.+..|+.++|+--+ | +++ ...+|+.. .+..+.++..++-+|+||-+|.+.-|
T Consensus 291 ---~l~~Gdvi~i~py~-------g-ki~-~~~~ge~v-~~f~lkt~~lldevrAGgripliiGr 342 (852)
T COG1049 291 ---NLEMGDVIDIYPYE-------G-KIR-NNNTGEVV-ATFSLKTDVLLDEVRAGGRIPLIIGR 342 (852)
T ss_pred ---cccccceEEeeccC-------C-eee-ccCCCcEE-EEeecCchhHHHHHhcCCceeEEEcc
Confidence 23456777776433 2 222 12234221 22223478899999999988876544
No 60
>COG1679 Predicted aconitase [General function prediction only]
Probab=92.54 E-value=0.31 Score=55.31 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=57.1
Q ss_pred ceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002785 413 DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 488 (881)
Q Consensus 413 ~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC 488 (881)
.++..+|| |---|.+.++..|.+| +|+|-++.+.++|+ -|+.|+.++.+.|+++.|+++|..++.-.|
T Consensus 289 epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 289 EPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 34566665 7778899999999999 88888888877665 689999999999999999999999997554
No 61
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=87.57 E-value=1.2 Score=51.54 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=56.1
Q ss_pred eEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccC
Q 002785 414 VVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG 493 (881)
Q Consensus 414 V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG 493 (881)
+++++| +|=--|.+.++.-|++| +|++.++.++++|. -|+.|+ +.+.|+.+.++++|+.|+.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 456677 68888899999999999 89877767766655 566676 89999999999999999997777 664
No 62
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=53.21 E-value=6 Score=39.27 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=23.2
Q ss_pred eEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCCcCC
Q 002785 651 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDF 691 (881)
Q Consensus 651 rvL~~~gd~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~f 691 (881)
.....+.++||||.|+|+ +||+. +.+.++
T Consensus 10 ~~~~~~~s~idtd~i~p~----------~~~~~--~~~~~l 38 (131)
T PF00694_consen 10 VAVPDFNSNIDTDQIIPA----------MFLGT--FANTGL 38 (131)
T ss_dssp EEEEEHHSTGGGHHHSCG----------GHHHS--CGCTTT
T ss_pred ccccccccccccccccHH----------HHhcc--ccCcch
Confidence 566789999999999998 88875 555554
No 63
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=30.54 E-value=42 Score=30.72 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=25.5
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 002785 418 AITSCTNTSNPSVMLGAALVAKKACELGLEVK 449 (881)
Q Consensus 418 ~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~ 449 (881)
+|+||..|.-...| ||+.|.+.|.+.|.+++
T Consensus 2 ~vtacp~G~Aht~l-Aae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHTFM-AAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 68999999876654 67888888899998777
No 64
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=30.15 E-value=44 Score=32.85 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=26.0
Q ss_pred cEEeccCcccccCCCCCCchHHHhhhc---cCceEEEEeeccCCCC
Q 002785 481 FHIVGYGCTTCIGNSGDIDDAVAAAIT---ENDIVAAAVLSGNRNF 523 (881)
Q Consensus 481 ~~i~~~GC~~CiG~~g~l~~~~~~~i~---~~~~~~~~vsS~NRNF 523 (881)
|.++.|.=+..-+ .+.++.++.+-+. ....+...|.||||||
T Consensus 41 ~vLitpTy~~G~~-~~~vp~~v~~FL~~~~N~~~l~GVigSGNrNf 85 (122)
T PF07972_consen 41 FVLITPTYGFGEN-DGGVPKQVIRFLENPDNRKLLRGVIGSGNRNF 85 (122)
T ss_dssp EEEEEE-BTTTBS-STSS-HHHHHHHHSHHHGGGEEEEEEEE-GGG
T ss_pred EEEEecccCCCCC-CCCCCHHHHHHHHHHHHHhhheeEEecCCcHH
Confidence 4455554333333 3448888888887 5566667789999999
No 65
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=27.72 E-value=71 Score=31.52 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=27.2
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 002785 416 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 449 (881)
Q Consensus 416 ~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~ 449 (881)
+++||+|..|=---.| ||+-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 6899999999766666 56778888999998777
No 66
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=26.64 E-value=58 Score=32.33 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=22.8
Q ss_pred CCCchHHHhhh---ccCceEEEEeeccCCCC
Q 002785 496 GDIDDAVAAAI---TENDIVAAAVLSGNRNF 523 (881)
Q Consensus 496 g~l~~~~~~~i---~~~~~~~~~vsS~NRNF 523 (881)
|.+++.+.+-+ .+.+++.+.+.||||||
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~ 86 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNF 86 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchH
Confidence 67888888877 45577788899999999
No 67
>COG1833 Uri superfamily endonuclease [Replication, recombination, and repair]
Probab=20.01 E-value=1.8e+02 Score=29.14 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=21.1
Q ss_pred HcCcHHHHHhcCcEEeccCcccccCCC
Q 002785 469 NSGLQKYLNHLGFHIVGYGCTTCIGNS 495 (881)
Q Consensus 469 ~~Gl~~~l~~aG~~i~~~GC~~CiG~~ 495 (881)
+..+-..|.+-+-.|.++||+-|---+
T Consensus 79 Ecela~~ls~~~~~I~gFG~SDc~cks 105 (132)
T COG1833 79 ECELARALSKNFEGIEGFGCSDCKCKS 105 (132)
T ss_pred HHHHHHHHHhcCCccCCCCCCCCCCcc
Confidence 455667788888899999999987543
Done!