Query 002785
Match_columns 881
No_of_seqs 357 out of 2851
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 18:46:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002785.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1497-1501//hhsearch_pdb/002785hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 1.0 1 1 2083.4 61.9 868 5-878 2-888 (888)
2 1c96_A Mitochondrial aconitase 1.0 1 1 1476.7 55.5 689 59-876 33-751 (753)
3 1l5j_A Aconitate hydratase 2; 1.0 1 1 829.8 37.9 433 37-593 343-838 (865)
4 1l5j_A Aconitate hydratase 2; 1.0 1 1 360.4 -1.9 283 521-879 47-355 (865)
5 2hcu_A 3-isopropylmalate dehyd 1.0 1 1 300.0 8.8 181 631-866 5-187 (213)
6 2pkp_A Homoaconitase small sub 1.0 1 1 292.2 10.8 156 653-878 7-162 (170)
7 1v7l_A 3-isopropylmalate dehyd 1.0 1 1 287.6 7.2 152 653-877 7-159 (163)
8 3vba_A Isopropylmalate/citrama 1.0 1 1 276.1 10.6 161 650-879 7-167 (176)
9 3q3w_A 3-isopropylmalate dehyd 1.0 1 1 259.9 6.7 167 645-866 8-177 (203)
10 3h5j_A 3-isopropylmalate dehyd 1.0 1 1 251.5 6.7 158 646-866 9-169 (171)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=1.00 E-value=1 Score=2083.40 Aligned_cols=868 Identities=61% Similarity=1.073 Sum_probs=820.8
Q ss_pred CCCCCCCCCEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 97100124100699972259970789999898889824577874200245855665999999982105999930694204
Q 002785 5 NPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKP 84 (881)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~p 84 (881)
+||.+.+++|...++ .|+||+|++++...+++|||||||||||+|||||+..+++++++++++|.++..++.+|.++|
T Consensus 2 ~~~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~p 79 (888)
T 2b3y_A 2 NPFAHLAEPLDPVQP--GKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFKP 79 (888)
T ss_dssp CTTGGGEEESCTTST--TCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEECC
T ss_pred CCHHHHHCCCCCCCC--EEEEEEHHHCCCCCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf 820454332678896--269998477263323108832999998887505786336999999965434689897788964
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 54563168727699999999999999099987437899879993699875854527799951499999944311134111
Q 002785 85 ARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWG 164 (881)
Q Consensus 85 drvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~i~p~~pv~lviDHsv~~~~~~~~~a~~~n~~~e~~rn~ery~flkw~ 164 (881)
|||++||+||+|+++||++||++++++|.||.++||.+|+++++||++|++.++.++|..+|+.++|+||.|||.||||+
T Consensus 80 drvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~ 159 (888)
T 2b3y_A 80 ARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWG 159 (888)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 47887746357899999998999986199843337788706995799876776654779999999999852157778988
Q ss_pred CCCCCCCCEECCCCCEECCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEECCCHHHHHHHHCCCCEEEECC
Q ss_conf 22346630108999423110022112045427982246836623898755686441441367899999992891783468
Q 002785 165 SNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (881)
Q Consensus 165 ~~~f~~~~v~ppG~GI~HQv~lE~la~~v~~~~G~~~PdtivGtDSHT~~~galG~lg~GvGg~ea~aamlg~~~~~~vP 244 (881)
+++|+||+++|||+|||||||+||||+|||.++|+++|||||||||||||+||||+|||||||+|+|++|+|||+||++|
T Consensus 160 ~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~P 239 (888)
T 2b3y_A 160 SQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLP 239 (888)
T ss_dssp HHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECC
T ss_pred HHHCCCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEECCC
T ss_conf 97644878889998880654253415542125761136728856887655674405897468899999995590760489
Q ss_pred EEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 29999997316999771107999999999748210699994386665571011322024822384031103684668986
Q 002785 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (881)
Q Consensus 245 evVgV~L~G~L~~gVtakDivL~i~~~Lr~~G~vgk~vEf~G~gv~~Ls~~dR~TIaNMa~E~GAt~~~fp~D~~T~~yL 324 (881)
|||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+|+||+|++|++||
T Consensus 240 evvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL 319 (888)
T 2b3y_A 240 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYL 319 (888)
T ss_dssp CEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHH
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHH
T ss_conf 78899997048989465689999999966388555599994673254661210105302265497057856838899999
Q ss_pred HHCCCCCC--------------C----CC-CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 00299989--------------9----99-99810189999869853354379999973126754201565311544677
Q 002785 325 KLTGRSDD--------------T----PQ-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 385 (881)
Q Consensus 325 ~~tgr~~~--------------~----~d-~~a~Y~~~ieiDLs~ieP~vAgP~~P~~~~~v~e~~~~~~~~~~~~~~~~ 385 (881)
+.|||+++ + +| ++|.|+++++||||+|+|+||+|++|||+++|++++++|.+++..+.+++
T Consensus 320 ~~~gr~~~~~~~~e~y~~a~~l~~~l~~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~~ 399 (888)
T 2b3y_A 320 VQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFK 399 (888)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTCCCCTTCGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBTT
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 86498467787789999989987534888789846799998710055741288993300086772234777652112234
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 75685001123300013898642257756899851588999867999999999999857982288653999528599999
Q 002785 386 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 465 (881)
Q Consensus 386 g~~i~~~~~~~~~~~~~~g~~~~l~~G~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~vaPgS~~V~~ 465 (881)
|+........+.++++++|.++.|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++
T Consensus 400 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~ 479 (888)
T 2b3y_A 400 GFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTY 479 (888)
T ss_dssp BCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHHH
T ss_pred CCCCCCHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHH
T ss_conf 44532001024512411895022368868899980687898577999999999999866997799853999689899999
Q ss_pred HHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHH
Q ss_conf 99985917999735939934686334379899865788641149628887511677788997897775173397999999
Q 002785 466 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 545 (881)
Q Consensus 466 ~l~~~Gl~~~L~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~aV~SgNRNF~GR~g~~~~~~YLaSP~lVaA~ 545 (881)
||+++||+++|+++||.|++|||++||||+++++++++++|.+||+++++|+|+||||+||||+..+++|||||++||||
T Consensus 480 ~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA~ 559 (888)
T 2b3y_A 480 YLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAY 559 (888)
T ss_dssp HHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHH
T ss_pred HHHHCCCHHHHHHCCCEEECCCCCCEECCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCHHHHHHH
T ss_conf 99983969999976989967887410378788773034332048714899952677867678987655575589999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98084434677887534899941104458999388898864036811343210112479966555567999853259998
Q 002785 546 ALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKS 625 (881)
Q Consensus 546 AlaG~i~~d~~~~plg~~~~G~~v~l~diwp~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~s 625 (881)
||+|+|++|+++||+|.+++|++|||+||||+.+|+++++...+++++|...|..++.+++.|+.++++.+++|+|+++|
T Consensus 560 AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~S 639 (888)
T 2b3y_A 560 AIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKS 639 (888)
T ss_dssp HHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTTC
T ss_pred HHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86073113654586555889983002356886355689987228987744443013577500135778888754668876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf 63458999876889999987644745985317877868514699999999576698882989767775566678601201
Q 002785 626 TYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMA 705 (881)
Q Consensus 626 tyi~~pp~f~~~~~~~~~~~~i~~a~vl~~~gD~itTDhIsPaG~I~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~ 705 (881)
|||++||||++++..+.+++++.++|+|+++|||||||||||||+|+++||||+||+++|+++++|||||+||||||||+
T Consensus 640 t~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm~ 719 (888)
T 2b3y_A 640 TYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMA 719 (888)
T ss_dssp SSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCHHHHH
T ss_conf 52458998665556788866633757999716876615466676656788789999864998577124122346777775
Q ss_pred CCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCEEEEEECC
Q ss_conf 23333213343202898799301048995332000799998609971999288657997520100012215812898130
Q 002785 706 RGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKS 785 (881)
Q Consensus 706 rg~Fan~r~~n~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~S 785 (881)
||+|+|||+.|+|++ .+|++|+|+|+|+.+++||++++|+++|+++|||||+|||||||||||||+++++||+||||+|
T Consensus 720 rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~S 798 (888)
T 2b3y_A 720 RGTFANIRLLNRFLN-KQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAES 798 (888)
T ss_dssp HTTTCCTTCEETTTT-EECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESC
T ss_pred HHCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEEHH
T ss_conf 412233433232344-4587224369986266265689887549856998987778875378999999981932999715
Q ss_pred HHHHHHHHCCCCCCCEEECCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 36787520014732103408954041106999818999678975467999659999289879999944999999999992
Q 002785 786 FERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDH 865 (881)
Q Consensus 786 F~rIhr~Nli~~GiLpL~~~~~~~~~~l~l~~~e~~~id~~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~a 865 (881)
|+||||+||+|||||||+|+++++++++++.+++.++|++.+ .++||+.+++...+|++|++.++++|+.|++||++
T Consensus 799 FarIf~~Nli~~Gllpl~~~~~~~~~~~~~~~~~~i~i~l~~---~~~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~a 875 (888)
T 2b3y_A 799 YERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPE---NLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFLN 875 (888)
T ss_dssp BCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSCSCEEECCCS---SCCTTCEEEEEETTSCEEEEEECCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCEEEEECCC---CCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHC
T ss_conf 989998546655883175066223988545799369997434---56899679999379849999955899999999981
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 4999999998741
Q 002785 866 GGILQYVIRNLIN 878 (881)
Q Consensus 866 GGiL~yv~r~~~~ 878 (881)
||||||+++++++
T Consensus 876 GGiL~yv~~~~~~ 888 (888)
T 2b3y_A 876 GGILNYMIRKMAK 888 (888)
T ss_dssp TSHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHC
T ss_conf 9899999997509
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=1.00 E-value=1 Score=1476.71 Aligned_cols=689 Identities=31% Similarity=0.475 Sum_probs=600.7
Q ss_pred CCHHHHHHHHHHHCCCC------C-CEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf 65999999982105999------9-3069420454563168727699999999999999099987437899879993699
Q 002785 59 VKSKDVEKIIDWETTSP------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHS 131 (881)
Q Consensus 59 ~~~~~ie~il~~~~~~~------~-~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~i~p~~pv~lviDHs 131 (881)
-.+|+.|||++.|.... . +.+|.++|||+++||+||++++++|++ +|.++ +..|..+++||+
T Consensus 33 ~~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~-------~G~~~----v~~P~~~~~DH~ 101 (753)
T 1c96_A 33 RPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-------SGLPK----VAVPSTIHCDHL 101 (753)
T ss_dssp SCCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHH-------HTCSS----CSSCEEEECCSS
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEECCCCHHHHHHHHH-------HCCCC----CCCCCCEECCCC
T ss_conf 8978999999997578544442699978999833898852530899999998-------09998----889876434898
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCEECCCCCCCCCEEEECCCCCCCCC-EEEECCC
Q ss_conf 875854527799951499999944311134111223466301089994231100221120454279822468-3662389
Q 002785 132 VQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDS 210 (881)
Q Consensus 132 v~~~~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQv~lE~la~~v~~~~G~~~Pd-tivGtDS 210 (881)
+|++..+..+ +..++.+|.|+|+||+|.+++| |++|+|||+||||||++|+ +++|+ ++|||||
T Consensus 102 v~~~~~~~~d-----~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~----------~~~Pg~~ivGtDS 165 (753)
T 1c96_A 102 IEAQLGGEKD-----LRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILEN----------YAYPGVLLIGTDS 165 (753)
T ss_dssp CCBSSCHHHH-----HHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHHH----------TCCTTCEEEESST
T ss_pred CCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCCEECEEECCC----------CCCCCCEEECCCC
T ss_conf 7777776643-----5554365799999999999977-9779899988507370303----------1379967865888
Q ss_pred CCCCCCCCCCEEECCCHHHHHHHHCCCCEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 87556864414413678999999928917834682999999731699977110799999999974821069999438666
Q 002785 211 HTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMS 290 (881)
Q Consensus 211 HT~~~galG~lg~GvGg~ea~aamlg~~~~~~vPevVgV~L~G~L~~gVtakDivL~i~~~Lr~~G~vgk~vEf~G~gv~ 290 (881)
||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+|||++
T Consensus 166 HT~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~ 245 (753)
T 1c96_A 166 HTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVD 245 (753)
T ss_dssp TGGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGG
T ss_pred CCCCCCHHHHHEECCCHHHHHHHHHCCEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 77765622431445678999999828865402786899999611698966789999998885328841489999777315
Q ss_pred CCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCCCC-----------CCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 557101132202482238403110368466898600299989-----------999998101899998698533543799
Q 002785 291 ELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDD-----------TPQSERVYSSYLELNLEEVVPCVSGPK 359 (881)
Q Consensus 291 ~Ls~~dR~TIaNMa~E~GAt~~~fp~D~~T~~yL~~tgr~~~-----------~~d~~a~Y~~~ieiDLs~ieP~vAgP~ 359 (881)
+||+++|||||||++|+|||+|+||+|++|++||+.++|.+. .+|++|.|+++++||||+|+|+||+|+
T Consensus 246 ~LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~~~~~~~~y~~~l~~D~~A~Yd~~ieiDls~leP~va~P~ 325 (753)
T 1c96_A 246 SISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPF 325 (753)
T ss_dssp GSCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHHHHHHHHHTGGGSSCCTTCCCSEEEEEEGGGCCCEEECSS
T ss_pred CCCCCHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEECCCC
T ss_conf 47710023354046653852030057489999998659837889999998643589999556999998221002422799
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99973126754201565311544677756850011233000138986422577568998515889998679999999999
Q 002785 360 RPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAK 439 (881)
Q Consensus 360 ~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~G~V~~a~IgSCTN~s~~dl~~aA~lLak 439 (881)
+|||+++|+++...+++ ++.+. +|+||||||||||||+|++ +|+.++|
T Consensus 326 ~P~~~~~v~e~~~~~~~--------------------------~~~~~-----~Vd~~~IGSCTN~~~~Dl~-~AA~ilk 373 (753)
T 1c96_A 326 TPDLAHPVAEVGSVAEK--------------------------EGWPL-----DIRVGLIGSCTNSSYEDMG-RSAAVAK 373 (753)
T ss_dssp STTCEEEHHHHHHHHHH--------------------------HTCCC-----BEEEEEEBTTTBCSHHHHH-HHHHHHH
T ss_pred CCCCEEEHHHHHHHHHH--------------------------CCCCC-----CEEEEEEECCCCCCHHHHH-HHHHHHC
T ss_conf 97554186885456763--------------------------58864-----1579998157899879999-9999960
Q ss_pred HHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECC
Q ss_conf 99857982288653999528599999999859179997359399346863343798998657886411496288875116
Q 002785 440 KACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSG 519 (881)
Q Consensus 440 ~A~~~G~kv~p~Vk~~vaPgS~~V~~~l~~~Gl~~~L~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~aV~Sg 519 (881)
+|+++|++ +.||++|+|||++|+.||+++||+++|+++||.|.+|||++||||+++.. ++. .+++ ++|||+
T Consensus 374 ga~~~~v~--~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~--~~~--~~~~---~~vsT~ 444 (753)
T 1c96_A 374 QALAHGLK--CKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD--IKK--GEKN---TIVTSY 444 (753)
T ss_dssp HHHTTTCC--CSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS--SCT--TCCE---EEEESS
T ss_pred CHHHCCCC--CCCEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCEEEECCCCCCC--CCC--CCCC---EEEECC
T ss_conf 57656999--88508996998999999998584999997696995688506236888755--566--7762---278605
Q ss_pred CCCCCCCCC-CCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 777889978-9777517339799999998084434677887534899941104458999388898864036811343210
Q 002785 520 NRNFEGRVH-PLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATY 598 (881)
Q Consensus 520 NRNF~GR~g-~~~~~~YLaSP~lVaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwp~~~ei~~~~~~~v~~~~f~~~y 598 (881)
||||+|||| +..+.+|||||++||||||+|+|++|+.+||| .+++|++|||+| |+.+|+.+ .+|.
T Consensus 445 NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~--------~~f~--- 510 (753)
T 1c96_A 445 NRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR--------AEFD--- 510 (753)
T ss_dssp SCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS--------SCCC---
T ss_pred CCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCC-CCCCCCEEEECC--CCCCHHHH--------HHCC---
T ss_conf 678444557899872365589999999973976468000535-577897033149--96200046--------5426---
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 11247996655556799-98532599986345899987688999998764474598531787786851469999999957
Q 002785 599 EAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPA 677 (881)
Q Consensus 599 ~~i~~~~~~w~~l~~~~-~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vl~~~gD~itTDhIsPaG~I~~~spa 677 (881)
.++..|+..+.+. +..|.|+++|||++.||+|++. +..++.++++|+++||+||||||||||
T Consensus 511 ----~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~~-----~~~~~~~~~vL~klgd~iTTDhIsPAG-------- 573 (753)
T 1c96_A 511 ----PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDKW-----DGKDLEDLQILIKVKGKCTTDHISAAG-------- 573 (753)
T ss_dssp ----CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCCC-----CSSCEEEEEEEEEBCSCCBHHHHBCCG--------
T ss_pred ----CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC-----CCCCCCCCEEEEECCCCCCCCCCCCCC--------
T ss_conf ----786333268998876127528987555679988888-----765533543787326875556605664--------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCC--CCCCC---CEEECCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf 6698882989767775566678601201233332133432028--98799---301048995332000799998609971
Q 002785 678 AKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--GEVGP---KTIHIPTGEKLSVFDAAMRYKNEGHDT 752 (881)
Q Consensus 678 ~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~n~~~~--~~~g~---~t~~~p~g~~~~i~~~a~~y~~~g~~~ 752 (881)
+||++ ||+|+|++ .|.|.. +.+++ +|+|+|+++.++++|++++|+++|+++
T Consensus 574 -~~L~~----------------------rg~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~~~d~a~~y~~~g~~~ 629 (753)
T 1c96_A 574 -PWLKF----------------------RGHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYYKQHGIRW 629 (753)
T ss_dssp -GGGGG----------------------TBCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEECHHHHHHHHHHHTCCE
T ss_pred -HHHCC----------------------CCCHHHHH-HHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCE
T ss_conf -34301----------------------66554411-3322066434578766147735874136577999999737973
Q ss_pred EEEECCCCCCCCCCCHHCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCEEECCCCCCHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf 99928865799752010001221581289813036787520014732103408954041106999818999678975467
Q 002785 753 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEI 832 (881)
Q Consensus 753 IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~rIhr~Nli~~GiLpL~~~~~~~~~~l~l~~~e~~~id~~~~~~~l 832 (881)
|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+++++++. +.++|+++|+... ++
T Consensus 630 iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~~Gllpl~~~~~~~~~~--l~~gd~i~I~gl~---~l 704 (753)
T 1c96_A 630 VVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNK--IHPVDKLTIQGLK---DF 704 (753)
T ss_dssp EEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTTCEEEEESSGGGGGG--CCTTCEEEEECGG---GC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHCCCCCEEECCCCHHHH--CCCCCEEEECCHH---HC
T ss_conf 999557678875267777657874756998643899998545546986366047520632--6899889976867---73
Q ss_pred CCCCEEEE--ECCCC--EEEEEEECCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99965999--92898--7999994499999999999249999999987
Q 002785 833 RPGQDVRV--VTDSG--KSFTCVIRFDTEVELAYFDHGGILQYVIRNL 876 (881)
Q Consensus 833 ~~g~~v~v--~~~~G--~~f~~~~~~~t~~e~~~~~aGGiL~yv~r~~ 876 (881)
.+++.+++ ...+| .+|.+.++ +|+.|++||++||||||++++.
T Consensus 705 ~~g~~v~~~i~~~~g~~~~~~~~~~-~t~~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 705 APGKPLKCIIKHPNGTQETILLNHT-FNETQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp CTTCCEEEEEECTTSCEEEEEEECC-CCHHHHHHHHHTSHHHHHHHHS
T ss_pred CCCCEEEEEEEECCCCEEEEEEECC-CCHHHHHHHHCCCHHHHHHHHH
T ss_conf 7896699999916996799999578-9989999998499999999860
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=829.79 Aligned_cols=433 Identities=22% Similarity=0.312 Sum_probs=368.6
Q ss_pred CCCCHHHHHHHHHHCCCCCC---------------CCCCHHHHHHHHHHHCCC---CCCEEEEECCCEEEECCCCCHHHH
Q ss_conf 88982457787420024585---------------566599999998210599---993069420454563168727699
Q 002785 37 DKLPYSIKILLESAIRNCDE---------------FQVKSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAV 98 (881)
Q Consensus 37 ~~lp~s~rvlle~~~r~~~~---------------~~~~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~ 98 (881)
..+||.++-.|-.-.|..-+ ...++|++|||++++.+. ..+.+|.++||||++||+||+|+
T Consensus 343 Gli~~i~~r~l~~~a~~~l~~~~~~~f~~~~~~~~~~mg~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~- 421 (865)
T 1l5j_A 343 GRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMT- 421 (865)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCSCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHH-
T ss_pred CHHHHHHCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCHHH-
T ss_conf 9666530003799999875899066404877877789886699999999738886589988999844999863575899-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 99999999999909998743789987999369987585452779995149999994431113411122346630108999
Q 002785 99 VDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGS 178 (881)
Q Consensus 99 ~dlaamr~~~~~~g~dp~~i~p~~pv~lviDHsv~~~~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~ 178 (881)
|++++++|.+ +++++. +..++||.++.+. +...+++||.++|.+.+|+ .++|||+
T Consensus 422 ------~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~~---------~~~~e~~~~~~~Fa~~~g~-------~~~~pg~ 476 (865)
T 1l5j_A 422 ------RDELKDLACL--GFSADL-VMQSFCHTAAYPK---------PVDVNTHHTLPDFIMNRGG-------VSLRPGD 476 (865)
T ss_dssp ------HHHHHHTTCC--SCCSSC-EEECCCSSSSSCC---------HHHHHHHHHHHHHHHTTTC-------EECCTTS
T ss_pred ------HHHHHHCCCC--CCCCCE-EEEECCCCCCCCC---------HHHHHHHHHHHHHHHHCCC-------EEECCCC
T ss_conf ------9999972897--578874-9997787776789---------7889999899999997397-------6747998
Q ss_pred CEECCCCCCCCCEEEECCCCCCCCCE-EEECCCCCCCCCCCCCEEECCCHHHHHHHHCCCCEEEECCEEEEEEEECCCCC
Q ss_conf 42311002211204542798224683-66238987556864414413678999999928917834682999999731699
Q 002785 179 GIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRD 257 (881)
Q Consensus 179 GI~HQv~lE~la~~v~~~~G~~~Pdt-ivGtDSHT~~~galG~lg~GvGg~ea~aamlg~~~~~~vPevVgV~L~G~L~~ 257 (881)
|||||++.| +++|++ +|||||||||+||+| +|.|+.+++.+|++|++|+++||+|+|+|+|+|++
T Consensus 477 GI~Hq~l~~-----------~~~PG~~ivGtDSHT~~~~Glg---~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~ 542 (865)
T 1l5j_A 477 GVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQP 542 (865)
T ss_dssp BCHHHHHGG-----------GCCTTCEEEESSTTCCCSSSEE---CCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCT
T ss_pred CEEEEEECC-----------CCCCCCEEEECCCCCCCCCCCE---ECCCHHHHHHHHHCCCEEECCCCEEEEEEEEECCC
T ss_conf 521034135-----------0204636982798866223532---07627999999970966504797789999702798
Q ss_pred CCCHHHHHHHHHHHHHHC------------CCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEECCC-HHHHHHH
Q ss_conf 977110799999999974------------821069999438666557101132202482238403110368-4668986
Q 002785 258 GVTATDLVLTVTQMLRKH------------GVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVD-HVTLQYL 324 (881)
Q Consensus 258 gVtakDivL~i~~~Lr~~------------G~vgk~vEf~G~gv~~Ls~~dR~TIaNMa~E~GAt~~~fp~D-~~T~~yL 324 (881)
|||+|||||+|++.++++ +++||+||| +|+++||+++|+|||||++|+||++|+||+| +.|++||
T Consensus 543 gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL 620 (865)
T 1l5j_A 543 GITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYL 620 (865)
T ss_dssp TCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEE--CCCCCCCHHHHHHHHHCCHHCCCEEEEEECCHHHHHHHH
T ss_conf 987288999999998752533423347623300489998--251017855565576410310872699937778999999
Q ss_pred HH----------CCCCC--------------------CCCCCCCCCCEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 00----------29998--------------------99999981018999986985-3354379999973126754201
Q 002785 325 KL----------TGRSD--------------------DTPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKAD 373 (881)
Q Consensus 325 ~~----------tgr~~--------------------~~~d~~a~Y~~~ieiDLs~i-eP~vAgP~~P~~~~~v~e~~~~ 373 (881)
+. +||.+ ..+|++|.|+++++||||+| ||+||+|++|+|+++++++++.
T Consensus 621 ~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~~~ 700 (865)
T 1l5j_A 621 NSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGE 700 (865)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCCCCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTTTC
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEEEECCCCCCCEECCCCCHHHCCCHHHHCCC
T ss_conf 86334333331048752011789999999987416500368998478999997113778876389984754662553303
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 56531154467775685001123300013898642257756899851588999867999999999999857982288653
Q 002785 374 WHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIK 453 (881)
Q Consensus 374 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~G~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk 453 (881)
+|+++|||||||+ ++|++.||.+| ||+++++.|+
T Consensus 701 ---------------------------------------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~~~v~ 734 (865)
T 1l5j_A 701 ---------------------------------------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQLPTR 734 (865)
T ss_dssp ---------------------------------------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSCCSSE
T ss_pred ---------------------------------------CCCEEEEECCCCC-HHHHHHHHHHH------CCCCCCCCCC
T ss_conf ---------------------------------------1016999358899-89999999997------2766689989
Q ss_pred EEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99952859999999985917999735939934686334379899865788641149628887511677788997897775
Q 002785 454 TSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRA 533 (881)
Q Consensus 454 ~~vaPgS~~V~~~l~~~Gl~~~L~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~aV~SgNRNF~GR~g~~~~~ 533 (881)
++|+|||++|+.||+++|++++|.++||.+.+|||++||||++.+ .++++ ++||+||||+||||+. ..
T Consensus 735 ~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~CiGn~~~~--------~~ge~---~isTsNRNF~GR~G~~-~~ 802 (865)
T 1l5j_A 735 LWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARV--------ADGAT---VVSTSTRNFPNRLGTG-AN 802 (865)
T ss_dssp EEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGGTCSSSCC--------CTTCE---EEESSSCCCTTSSSTT-CE
T ss_pred EEEECCCHHHHHHHHHCCCHHHHHHCCCEECCCCCCCCCCCCCCC--------CCCCE---EEECCCCCCCCCCCCC-CC
T ss_conf 799798999999999858499999759789378550265838867--------99998---9966886877777887-50
Q ss_pred EEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 173397999999980844346778875348999411044589993888988640368113
Q 002785 534 NYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDM 593 (881)
Q Consensus 534 ~YLaSP~lVaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwp~~~ei~~~~~~~v~~~~ 593 (881)
+|||||++||||||+|+| |+.+|+.+++...++|+.
T Consensus 803 ~yLaSP~~vAAsAiaG~i------------------------~~p~e~~~~~~~~~~~~~ 838 (865)
T 1l5j_A 803 VFLASAELAAVAALIGKL------------------------PTPEEYQTYVAQVDKTAV 838 (865)
T ss_dssp EEECCHHHHHHHHHHSBC------------------------CCHHHHHHHHHHHHTTHH
T ss_pred EEECCHHHHHHHHHCCCC------------------------CCHHHHHHHHHHHCCCCC
T ss_conf 677799999999967868------------------------988999999986228744
No 4
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=360.41 Aligned_cols=283 Identities=19% Similarity=0.233 Sum_probs=217.3
Q ss_pred CCCCCCCCCC------CCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE-ECCCCCCCHHHHH----HHHHH-C
Q ss_conf 7788997897------775173397999999980844346778875348999411-0445899938889----88640-3
Q 002785 521 RNFEGRVHPL------TRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKI-FLRDIWPSSEEVA----HVVQK-S 588 (881)
Q Consensus 521 RNF~GR~g~~------~~~~YLaSP~lVaA~AlaG~i~~d~~~~plg~~~~G~~v-~l~diwp~~~ei~----~~~~~-~ 588 (881)
.-|.+|+.|. ++++||+|+ |.+++..+.|+.++.+++||....|.+| +|.||| +.+|+. +.++. .
T Consensus 47 ~~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~ 123 (865)
T 1l5j_A 47 DLLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTL 123 (865)
T ss_dssp HHHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCC
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHH-CCHHHHHHHHHHHHHHH
T ss_conf 9997077989980788899999998--71745478649899987510489997319999884-75356899999987620
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 68113432101124799665555679998532599986345899987688999998764474598531787786851469
Q 002785 589 VLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPA 668 (881)
Q Consensus 589 v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vl~~~gD~itTDhIsPa 668 (881)
+..++|.+.|+....||+.|+++ ++.|...+-+..+|++- ..+++ ++ .+++|||||||||||
T Consensus 124 l~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~~----------~~i~g-~v-~~~~~nIdTD~IiPa 185 (865)
T 1l5j_A 124 LMFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPALA----------EKLTV-TV-FKVTGETNTDDLSPA 185 (865)
T ss_dssp TTTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCCC----------SCEEE-EE-EEEEEEEEHHHHSCG
T ss_pred CCHHHHHHHHHHHHCCCHHHHHH------HHHCCCCCCCCCCCCCC----------CEEEE-EE-EECCCCCCHHCCCCH
T ss_conf 20988999999986138989999------87311432002588878----------53899-99-965897754030766
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHC
Q ss_conf 99999995766988829897677755666786012012333321334320289879930104899533200079999860
Q 002785 669 GSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNE 748 (881)
Q Consensus 669 G~I~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~n~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~ 748 (881)
+||..+ . +.+.+.++.|.++|.. +-++ ++.+ . .-+...++++..
T Consensus 186 ----------~~l~~~-~-------------d~~~~a~~lf~~~r~~--~~p~--------f~~~-~-~~~~~i~~~~~~ 229 (865)
T 1l5j_A 186 ----------PDAWSR-P-------------DIPLHALAMLKNAREG--IEPD--------QPGV-V-GPIKQIEALQQK 229 (865)
T ss_dssp ----------GGGGGT-T-------------SHHHHGGGTTCSCBTT--BCCS--------BTTT-B-CSHHHHHHHHTT
T ss_pred ----------HHHHCC-C-------------CHHHHHHHHHHCCCCC--CCCC--------CCCC-C-CCHHHHHHHHCC
T ss_conf ----------563218-9-------------9799999972112358--9832--------1233-5-604444565349
Q ss_pred CCCEEEEECCCCCCCCCCCHHCCCC-------------CCCCEEEEEECCHHHHHHHHCCCCCCCEEECCCCCCHHHCCC
Q ss_conf 9971999288657997520100012-------------215812898130367875200147321034089540411069
Q 002785 749 GHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGL 815 (881)
Q Consensus 749 g~~~IIVAG~nyG~GSSRE~Aa~~~-------------~~lGVraVIA~SF~rIhr~Nli~~GiLpL~~~~~~~~~~l~l 815 (881)
|. .|+|+|+|||||||||||+|++ +.+| ++|||+||+||||+|++|+|+||++++ .+. +
T Consensus 230 G~-~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~~--l 301 (865)
T 1l5j_A 230 GF-PLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VSN--L 301 (865)
T ss_dssp SS-CEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CTT--C
T ss_pred CC-EEEEECCCEECCCCHHHHHHHHHHHHCCCCCCCCHHHCC-CEEEECHHHHHHHHHHHHCCCCEEEEC----HHH--C
T ss_conf 98-799979835268645889999998715777687464428-859964698999977997699568833----866--4
Q ss_pred CCCEEEEEECCCCCCCCCCCCEEEEECCCCEE-EEEEECCCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99818999678975467999659999289879-99994499999999999249999999987410
Q 002785 816 TGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLINV 879 (881)
Q Consensus 816 ~~~e~~~id~~~~~~~l~~g~~v~v~~~~G~~-f~~~~~~~t~~e~~~~~aGGiL~yv~r~~~~~ 879 (881)
..+++++||+.. ++|+ ...+|++ +++.+ +++++++++++||+++|++++.+..
T Consensus 302 ~~Gd~i~Idl~~--------g~I~-~~~~g~~~~~f~~--~p~~~~~~v~AGGli~~i~~r~l~~ 355 (865)
T 1l5j_A 302 NMGDVIDVYPYK--------GEVR-NHETGELLATFEL--KTDVLIDEVRAGGRIPLIIGRGLTT 355 (865)
T ss_dssp CTTCEEEEETTT--------TEEE-ETTTCCEEEECCC--SCTHHHHHHHHTSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--------CEEE-ECCCCEEEEEEEE--CCHHHHHHHHCCCHHHHHHCCHHHH
T ss_conf 999789998889--------9899-7699859999776--9879999998699666530003799
No 5
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=1.00 E-value=1 Score=299.99 Aligned_cols=181 Identities=23% Similarity=0.349 Sum_probs=140.8
Q ss_pred CCCCCCCCCCCCCCCCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 99987688999998764--4745985317877868514699999999576698882989767775566678601201233
Q 002785 631 PPYFKDMTMSPPGPHGV--KGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGT 708 (881)
Q Consensus 631 pp~f~~~~~~~~~~~~i--~~a~vl~~~gD~itTDhIsPaG~I~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~ 708 (881)
.|||+++.......+.+ ..++++.+.|||||||||||| +||+. +++++| .+++
T Consensus 5 ~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~l-------------~~~~ 59 (213)
T 2hcu_A 5 ASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKGF-------------GKYL 59 (213)
T ss_dssp --------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSCC-------------GGGT
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHCCHH----------HHHCC--CCHHHH-------------HHHH
T ss_conf 6655873015556888138999999928987784222669----------88673--898788-------------8887
Q ss_pred CCCHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCEEEEEECCHHH
Q ss_conf 33213343202898799301048995332000799998609971999288657997520100012215812898130367
Q 002785 709 FANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFER 788 (881)
Q Consensus 709 Fan~r~~n~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~r 788 (881)
|+++|+.|+ +|.++|. ++.+. .+|+. +.|||||+|||||||||||+|+++++||+||||+||+|
T Consensus 60 f~~~r~~~~--~g~~~p~----------f~~~~-~~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFAr 123 (213)
T 2hcu_A 60 MYEWRYLDN--NYTENPD----------FIFNQ-PEYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGD 123 (213)
T ss_dssp THHHHBSST--TCCBCTT----------SGGGS-GGGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCH
T ss_pred HHCCCCCCC--CCCCCCC----------CCCCC-HHHCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHH
T ss_conf 533402255--8887987----------01151-33058---72899358889997779999999984875899755999
Q ss_pred HHHHHCCCCCCCEEECCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 875200147321034089540411069998189996789754679996599992898799999449999999999924
Q 002785 789 IHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 866 (881)
Q Consensus 789 Ihr~Nli~~GiLpL~~~~~~~~~~l~l~~~e~~~id~~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 866 (881)
|||+||+|||+|||+|++++..+.+....+++++||+.. ++|+ ..+| ++++. + ++...+++.+|
T Consensus 124 IF~~N~in~GlLpl~~~~~~~~~l~~~~~G~~i~VDl~~--------~~I~--~~~g-~~~f~--i-~~~~k~~l~~G 187 (213)
T 2hcu_A 124 IHYNNDLNNGILPIIQPKEVRDKLAKLKPTDEVTVNLFE--------QKIY--SPVG-DFSFD--I-DGEWKHKLLNG 187 (213)
T ss_dssp HHHHHHHTTTCEEEECCHHHHHHHHTSCTTCEEEEETTT--------TEEE--ETTE-EEECC--C-CHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCEEECHHHHHHHHCCCCCCEEEEECCC--------CEEE--ECCC-EEEEE--C-CHHHHHHHHCC
T ss_conf 999889976997487088999998514999789998889--------9999--7995-49986--8-99999999829
No 6
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=292.19 Aligned_cols=156 Identities=31% Similarity=0.514 Sum_probs=127.2
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCEEECCC
Q ss_conf 85317877868514699999999576698882989767775566678601201233332133432028987993010489
Q 002785 653 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 732 (881)
Q Consensus 653 l~~~gD~itTDhIsPaG~I~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~n~~~~~~~g~~t~~~p~ 732 (881)
+.++|||||||||+|| +||. |.|.+.+.+.+|.++| |
T Consensus 7 v~~~~dnIdTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (170)
T 2pkp_A 7 AHKFGDDVDTDAIIPG----------PYLR---------------TTDPYELASHCMAGID-----------------E- 43 (170)
T ss_dssp EEECCSCCBHHHHSCG----------GGGS---------------CCCHHHHHTTTTTTTC-----------------T-
T ss_pred EEECCCCCCHHHCCHH----------HHHC---------------CCCHHHHHHHHCCCCC-----------------C-
T ss_conf 9977998885544727----------7758---------------7998999997566678-----------------7-
Q ss_pred CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCEEECCCCCCHHH
Q ss_conf 95332000799998609971999288657997520100012215812898130367875200147321034089540411
Q 002785 733 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 812 (881)
Q Consensus 733 g~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~rIhr~Nli~~GiLpL~~~~~~~~~~ 812 (881)
+.+.+++. +.|||||+|||||||||||||+++++||+||||+||+||||+||+|||+|||+|+ ++.
T Consensus 44 -------~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~ 109 (170)
T 2pkp_A 44 -------NFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----TDE 109 (170)
T ss_dssp -------THHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----GGG
T ss_pred -------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCEEEEC----HHH
T ss_conf -------45773788---8789936877898788999999998587399973388999856887799569835----888
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 069998189996789754679996599992898799999449999999999924999999998741
Q 002785 813 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 878 (881)
Q Consensus 813 l~l~~~e~~~id~~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~r~~~~ 878 (881)
+.++++++|++.. + +++ ...+|.+|++. .+++.+++++++||+|||++++++.
T Consensus 110 --l~~gd~i~idl~~-------~-~v~-~~~~g~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~~ 162 (170)
T 2pkp_A 110 --IKDGDIVEIDLDK-------E-EIV-ITNKNKTIKCE--TPKGLEREILAAGGLVNYLKKRKLI 162 (170)
T ss_dssp --CCTTCEEEEETTT-------T-EEE-EGGGTEEEECB--CCCHHHHHHHHTTSHHHHHHHHHHH
T ss_pred --CCCCCEEEEECCC-------C-EEE-ECCCCEEEEEE--ECCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf --6999689998879-------9-999-77998599999--6999999999929999999998776
No 7
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=1.00 E-value=1 Score=287.59 Aligned_cols=152 Identities=36% Similarity=0.554 Sum_probs=123.0
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCEEECCC
Q ss_conf 85317877868514699999999576698882989767775566678601201233332133432028987993010489
Q 002785 653 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 732 (881)
Q Consensus 653 l~~~gD~itTDhIsPaG~I~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~n~~~~~~~g~~t~~~p~ 732 (881)
+.++|||||||||+|| +||. |+|.+.+.+.+|.++| |
T Consensus 7 ~~~~~dnidTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (163)
T 1v7l_A 7 VWKFGDDISTDEITPG----------RYNL---------------TKDPKELAKIAFIEVR-----------------P- 43 (163)
T ss_dssp EEECCSCCBHHHHSCT----------TSCC---------------CSCHHHHHHHTTTTTC-----------------T-
T ss_pred EEECCCCCCHHCCCHH----------HHHC---------------CCCHHHHHHHHCCCCC-----------------C-
T ss_conf 9983998884025437----------7738---------------7998899997677668-----------------6-
Q ss_pred CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCEEECCCCCCHHH
Q ss_conf 95332000799998609971999288657997520100012215812898130367875200147321034089540411
Q 002785 733 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 812 (881)
Q Consensus 733 g~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~rIhr~Nli~~GiLpL~~~~~~~~~~ 812 (881)
+.+.+++. +.|||||+|||||||||||||+++++||+||||+||+||||+||+|||+|||+|+ ++
T Consensus 44 -------~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~- 108 (163)
T 1v7l_A 44 -------DFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TE- 108 (163)
T ss_dssp -------THHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CT-
T ss_pred -------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCEEEEC----HH-
T ss_conf -------54773788---8789955867898888999999998598799971388999856887799669823----78-
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEE-EEEEECCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 06999818999678975467999659999289879-999944999999999992499999999874
Q 002785 813 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLI 877 (881)
Q Consensus 813 l~l~~~e~~~id~~~~~~~l~~g~~v~v~~~~G~~-f~~~~~~~t~~e~~~~~aGGiL~yv~r~~~ 877 (881)
.+.++++++|++.. + +++ +|++ |++.. .++.+++++++||+|||+++++.
T Consensus 109 -~l~~gd~i~idl~~-------~-~v~----~g~~~~~~~~--~~~~~~~~l~aGGll~~~~~~~~ 159 (163)
T 1v7l_A 109 -GLKDGDLVTVNWET-------G-EVR----KGDEILMFEP--LEDFLLEIVREGGILEYIRRRGD 159 (163)
T ss_dssp -TCCTTCEEEEETTT-------T-EEE----ETTEEEECEE--CCHHHHHHHHTTSHHHHHHHSCC
T ss_pred -HCCCCCEEEEECCC-------C-EEE----CCCEEEEEEC--CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf -82899389998669-------9-898----8918999872--99999999991999999999876
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=276.10 Aligned_cols=161 Identities=25% Similarity=0.455 Sum_probs=127.4
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCEEE
Q ss_conf 45985317877868514699999999576698882989767775566678601201233332133432028987993010
Q 002785 650 AYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIH 729 (881)
Q Consensus 650 a~vl~~~gD~itTDhIsPaG~I~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~n~~~~~~~g~~t~~ 729 (881)
.+++ ++|||||||+|+|| +||.. .+.+.+.+..|.++|
T Consensus 7 g~v~-~~gdnIdTD~IiPa----------~~l~~---------------~~~~~l~~~~f~~~~---------------- 44 (176)
T 3vba_A 7 GRVW-KFGNNVDTDAILPA----------RYLVY---------------TKPEELAQFVMTGAD---------------- 44 (176)
T ss_dssp EEEE-ECCSSCBHHHHSCG----------GGTTC---------------CSHHHHGGGTTTTTC----------------
T ss_pred EEEE-EECCCCCHHHCCCH----------HHHCC---------------CCHHHHHHHHCCCCC----------------
T ss_conf 8999-90897656643808----------77086---------------998999975176778----------------
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCEEECCCCCC
Q ss_conf 48995332000799998609971999288657997520100012215812898130367875200147321034089540
Q 002785 730 IPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGED 809 (881)
Q Consensus 730 ~p~g~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~rIhr~Nli~~GiLpL~~~~~~~ 809 (881)
|+ .+.+|+. +.|||||+|||||||||||+|+++.+|++||||+||+|||++||+|+|+||++++ +.
T Consensus 45 -p~--------F~~~~~~---g~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~~ 110 (176)
T 3vba_A 45 -PD--------FPKKVKP---GDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECK--GI 110 (176)
T ss_dssp -TT--------HHHHCCT---TCEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--TH
T ss_pred -CC--------HHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEECC--HH
T ss_conf -31--------7875478---8889967876288567899999999697499965277899866987699868761--68
Q ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 4110699981899967897546799965999928987999994499999999999249999999987410
Q 002785 810 AETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLINV 879 (881)
Q Consensus 810 ~~~l~l~~~e~~~id~~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~r~~~~~ 879 (881)
++. +..+++++||+.+ ++|+. ..+|+++.+. . .++.+++++++||++||++++...+
T Consensus 111 ~~~--~~~gd~i~idl~~--------~~v~~-~~~g~~~~~~-~-l~~~~~~ii~aGGli~~~k~~~~~~ 167 (176)
T 3vba_A 111 SEK--VNEGDELEVNLET--------GEIKN-LTTGEVLKGQ-K-LPEFMMEILEAGGLMPYLKKKMAES 167 (176)
T ss_dssp HHH--CCTTCEEEEETTT--------CEEEE-TTTCCEEECC-C-CCHHHHHHHHHTSHHHHHHHHHHTC
T ss_pred HHH--CCCCCEEEEECCC--------CEEEE-CCCCEEEEEE-C-CCHHHHHHHHCCCHHHHHHHHCCHH
T ss_conf 874--5999889998899--------99996-7898699985-4-9999999999399899999853344
No 9
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=1.00 E-value=1 Score=259.88 Aligned_cols=167 Identities=24% Similarity=0.345 Sum_probs=124.6
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCC
Q ss_conf 76447459853178778685146999999995766988829897677755666786012012333321334320289879
Q 002785 645 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG 724 (881)
Q Consensus 645 ~~i~~a~vl~~~gD~itTDhIsPaG~I~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~n~~~~~~~g 724 (881)
..+++ +++.+.+||||||+|+|+ +||+. +++.+| .++.|.++|+.. .|.+.
T Consensus 8 ~~~~G-~a~~l~~dnIDTD~IIP~----------~fL~~--~~~~~l-------------g~~~f~~~R~~~---~g~~~ 58 (203)
T 3q3w_A 8 IIHKG-IACPLEYANIDTDQIIPK----------QFLLA--VSKQGF-------------GKHLFHDLRYLD---DKESV 58 (203)
T ss_dssp SEEEE-EEEEECCSSCBHHHHSCG----------GGCBS--SCSSCS-------------GGGTTHHHHBSS---SSSCS
T ss_pred EEEEE-EEEECCCCCCCHHHCCHH----------HHCCC--CCHHHH-------------HHHHHHHHHCCC---CCCCC
T ss_conf 79999-999888865684015509----------77486--898899-------------886434322135---67877
Q ss_pred CCEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCEEEC
Q ss_conf 93010489953320007999986099719992886579975201000122158128981303678752001473210340
Q 002785 725 PKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 804 (881)
Q Consensus 725 ~~t~~~p~g~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~rIhr~Nli~~GiLpL~~ 804 (881)
+ .| .|+.+. .+|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||+++
T Consensus 59 ~----~p----dF~~n~-~~~~~---~~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~ 126 (203)
T 3q3w_A 59 L----NM----DFNLNK-KEYQN---SSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIEL 126 (203)
T ss_dssp B----CT----TSGGGS-GGGTT---EEEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTTCEEEEC
T ss_pred C----CC----CHHHCC-CCCCC---CCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEE
T ss_conf 8----98----811265-33589---888996987788876789999999829529997828999997887679875986
Q ss_pred CCCCCHHHCC---CCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 8954041106---9998189996789754679996599992898799999449999999999924
Q 002785 805 KPGEDAETHG---LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 866 (881)
Q Consensus 805 ~~~~~~~~l~---l~~~e~~~id~~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 866 (881)
++........ ...+++++||+.. ++|+ . +|.++++.. ++...+.+.+|
T Consensus 127 ~~~~~~~l~~~~~~~~g~~i~VDL~~--------~~i~--~-~g~~~~f~i---~~~~r~~Ll~G 177 (203)
T 3q3w_A 127 AKDEVLEIVDELKKSQDKNIEISLLE--------KRVF--F-KDKIFSFDL---DDFHRICLLEG 177 (203)
T ss_dssp CHHHHHHHHHHHHHCSCCEEEEETTT--------TEEE--E-TTEEEECCC---CHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCC--------CEEE--E-CCEEEEEEE---CHHHHHHHHCC
T ss_conf 88999999998623899789998889--------9999--8-999999984---99999999809
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=1.00 E-value=1 Score=251.48 Aligned_cols=158 Identities=23% Similarity=0.304 Sum_probs=119.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 64474598531787786851469999999957669888298976777556667860120123333213343202898799
Q 002785 646 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 725 (881)
Q Consensus 646 ~i~~a~vl~~~gD~itTDhIsPaG~I~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~n~~~~~~~g~ 725 (881)
.+++ +++.+.|||||||+|+|+ +||+. ++++ .|.+++|.++|..
T Consensus 9 ~~~G-~~~~l~~dnIdTD~IiPa----------~~L~~--~~~~-------------~l~~~~f~~~R~~---------- 52 (171)
T 3h5j_A 9 THSG-IGVPLRRSNVDTDQIIPA----------VFLKR--VTRT-------------GFEDGLFAGWRSD---------- 52 (171)
T ss_dssp EEEE-EEEEECCCSCCHHHHSCG----------GGTTC--CSCS-------------CCGGGTTTTGGGS----------
T ss_pred EEEE-EEEECCCCCCCCCCCCCH----------HHCCC--CCHH-------------HHHHHHHCCCCCC----------
T ss_conf 9999-999866876683017746----------55487--9989-------------9988754067679----------
Q ss_pred CEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCEEECC
Q ss_conf 30104899533200079999860997199928865799752010001221581289813036787520014732103408
Q 002785 726 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 805 (881)
Q Consensus 726 ~t~~~p~g~~~~i~~~a~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~rIhr~Nli~~GiLpL~~~ 805 (881)
|+ |+.+. .+|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+|+|||+++
T Consensus 53 -----p~----F~~~~-~~~~~---~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~ 119 (171)
T 3h5j_A 53 -----PA----FVLNL-SPFDR---GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVA 119 (171)
T ss_dssp -----TT----SGGGS-TTGGG---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTCEEEECC
T ss_pred -----CC----CCCCC-CCCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEEEC
T ss_conf -----68----00065-02479---8689968873488677999999998699599988478999868987697539968
Q ss_pred CCCCHHHC---CCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 95404110---69998189996789754679996599992898799999449999999999924
Q 002785 806 PGEDAETH---GLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 866 (881)
Q Consensus 806 ~~~~~~~l---~l~~~e~~~id~~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 866 (881)
+....+.. ....+++++||+.. ++|+ . .|.++++.. .+...+.+.+|
T Consensus 120 ~~~~~~l~~~~~~~~g~~i~VDl~~--------~~i~--~-~g~~~~F~i---~~~~k~~ll~G 169 (171)
T 3h5j_A 120 QDDVELLWKLIEQSPGLEITANLQD--------RIIT--A-ATVVLPFKI---DDHSAWRLLEG 169 (171)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEETTT--------TEEE--E-TTEEEECBC---CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCC--------CEEE--E-CCEEEEEEE---CHHHHHHHHHC
T ss_conf 8999999998624999689999889--------9999--8-999999998---99999998818
Done!